Scaffold001 rebuild transcript 65 2382 . + . gene_id "RvY_00001"; transcript_id "RvY_00001.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 65 242 . + . gene_id "RvY_00001"; transcript_id "RvY_00001.1"; Scaffold001 rebuild exon 441 704 . + . gene_id "RvY_00001"; transcript_id "RvY_00001.1"; Scaffold001 rebuild exon 934 1359 . + . gene_id "RvY_00001"; transcript_id "RvY_00001.1"; Scaffold001 rebuild exon 1853 2382 . + . gene_id "RvY_00001"; transcript_id "RvY_00001.1"; Scaffold001 rebuild transcript 4113 4340 . + . gene_id "RvY_00002"; transcript_id "RvY_00002.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4113 4340 . + . gene_id "RvY_00002"; transcript_id "RvY_00002.1"; Scaffold001 rebuild transcript 5019 5231 . - . gene_id "RvY_00003"; transcript_id "RvY_00003.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5019 5231 . - . gene_id "RvY_00003"; transcript_id "RvY_00003.1"; Scaffold001 rebuild transcript 5486 7239 . + . gene_id "RvY_00004"; transcript_id "RvY_00004.1"; annotation "hypothetical protein."; Pfam "[RIB43A]"; Scaffold001 rebuild exon 5486 5652 . + . gene_id "RvY_00004"; transcript_id "RvY_00004.1"; Scaffold001 rebuild exon 5729 5805 . + . gene_id "RvY_00004"; transcript_id "RvY_00004.1"; Scaffold001 rebuild exon 5876 6095 . + . gene_id "RvY_00004"; transcript_id "RvY_00004.1"; Scaffold001 rebuild exon 6172 6418 . + . gene_id "RvY_00004"; transcript_id "RvY_00004.1"; Scaffold001 rebuild exon 6943 7239 . + . gene_id "RvY_00004"; transcript_id "RvY_00004.1"; Scaffold001 rebuild transcript 8172 9832 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.1"; gene_name "(1)COG4642"; annotation "hypothetical protein."; Pfam "[MORN] MORN repeat"; CDD "(1)Uncharacterized protein conserved in bacteria [Function unknown]"; similar_genes "(1)RSPH1_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 8172 8204 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.1"; Scaffold001 rebuild exon 8309 8400 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.1"; Scaffold001 rebuild exon 8481 8631 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.1"; Scaffold001 rebuild exon 8821 9119 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.1"; Scaffold001 rebuild exon 9553 9832 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.1"; Scaffold001 rebuild transcript 8823 9735 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.2"; gene_name "(1)COG4642"; annotation "hypothetical protein."; Pfam "[MORN] MORN repeat"; CDD "(1)Uncharacterized protein conserved in bacteria [Function unknown]"; similar_genes "(1)RSPH1_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 8823 9119 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.2"; Scaffold001 rebuild exon 9553 9735 . - . gene_id "RvY_00005"; transcript_id "RvY_00005.2"; Scaffold001 rebuild transcript 9972 14382 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; gene_name "LMBR1"; annotation "putative LMBR1 domain-containing protein 2-B"; Pfam "[LMBR1] LMBR1-like membrane protein"; CDD "LMBR1-like membrane protein. Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor"; similar_genes "LMD2B_DANRE(e-value:1.1e-35;bit-score:148.0)"; Scaffold001 rebuild exon 9972 10182 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 10492 10613 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 10863 11107 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 11161 11328 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 11587 11797 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 11861 11938 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 11998 12322 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 12617 12798 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 13366 13567 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild exon 14189 14382 . + . gene_id "RvY_00006"; transcript_id "RvY_00006.1"; Scaffold001 rebuild transcript 14501 14716 . + . gene_id "RvY_00007"; transcript_id "RvY_00007.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 14501 14716 . + . gene_id "RvY_00007"; transcript_id "RvY_00007.1"; Scaffold001 rebuild transcript 14958 17685 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; gene_name "SAC6"; annotation "putative Filamin-B"; Pfam "[Filamin] Filamin/ABP280 repeat|[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; similar_genes "FLNB_MOUSE(e-value:1.2e-28;bit-score:124.0)"; Scaffold001 rebuild exon 14958 15157 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild exon 15523 15885 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild exon 16158 16242 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild exon 16332 16465 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild exon 16561 16809 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild exon 17101 17324 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild exon 17402 17685 . - . gene_id "RvY_00008"; transcript_id "RvY_00008.1"; Scaffold001 rebuild transcript 18207 19322 . - . gene_id "RvY_00009"; transcript_id "RvY_00009.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 18207 19322 . - . gene_id "RvY_00009"; transcript_id "RvY_00009.1"; Scaffold001 rebuild transcript 19823 21163 . + . gene_id "RvY_00010"; transcript_id "RvY_00010.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 19823 21163 . + . gene_id "RvY_00010"; transcript_id "RvY_00010.1"; Scaffold001 rebuild transcript 21356 22951 . + . gene_id "RvY_00011"; transcript_id "RvY_00011.1"; annotation "hypothetical protein."; Pfam "[Radial_spoke] Radial spokehead-like protein"; Scaffold001 rebuild exon 21356 21555 . + . gene_id "RvY_00011"; transcript_id "RvY_00011.1"; Scaffold001 rebuild exon 21643 21814 . + . gene_id "RvY_00011"; transcript_id "RvY_00011.1"; Scaffold001 rebuild exon 22112 22235 . + . gene_id "RvY_00011"; transcript_id "RvY_00011.1"; Scaffold001 rebuild exon 22307 22462 . + . gene_id "RvY_00011"; transcript_id "RvY_00011.1"; Scaffold001 rebuild exon 22821 22951 . + . gene_id "RvY_00011"; transcript_id "RvY_00011.1"; Scaffold001 rebuild transcript 24257 25189 . - . gene_id "RvY_00012"; transcript_id "RvY_00012.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 24257 24573 . - . gene_id "RvY_00012"; transcript_id "RvY_00012.1"; Scaffold001 rebuild exon 24691 25189 . - . gene_id "RvY_00012"; transcript_id "RvY_00012.1"; Scaffold001 rebuild transcript 25451 26448 . + . gene_id "RvY_00013"; transcript_id "RvY_00013.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 25451 25466 . + . gene_id "RvY_00013"; transcript_id "RvY_00013.1"; Scaffold001 rebuild exon 26021 26448 . + . gene_id "RvY_00013"; transcript_id "RvY_00013.1"; Scaffold001 rebuild transcript 26790 28939 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 26790 27257 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild exon 27482 27549 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild exon 27612 27720 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild exon 27802 27881 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild exon 28312 28456 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild exon 28528 28585 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild exon 28800 28939 . - . gene_id "RvY_00014"; transcript_id "RvY_00014.1"; Scaffold001 rebuild transcript 29573 31446 . + . gene_id "RvY_00015"; transcript_id "RvY_00015.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold001 rebuild exon 29573 29773 . + . gene_id "RvY_00015"; transcript_id "RvY_00015.1"; Scaffold001 rebuild exon 29848 30081 . + . gene_id "RvY_00015"; transcript_id "RvY_00015.1"; Scaffold001 rebuild exon 30333 30611 . + . gene_id "RvY_00015"; transcript_id "RvY_00015.1"; Scaffold001 rebuild exon 30754 31446 . + . gene_id "RvY_00015"; transcript_id "RvY_00015.1"; Scaffold001 rebuild transcript 31523 32032 . - . gene_id "RvY_00016"; transcript_id "RvY_00016.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 31523 31728 . - . gene_id "RvY_00016"; transcript_id "RvY_00016.1"; Scaffold001 rebuild exon 31885 32032 . - . gene_id "RvY_00016"; transcript_id "RvY_00016.1"; Scaffold001 rebuild transcript 32291 34966 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; annotation "hypothetical protein."; Pfam "[TPR_12] Tetratricopeptide repeat"; Scaffold001 rebuild exon 32291 32688 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild exon 32977 33124 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild exon 33191 33538 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild exon 33612 33734 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild exon 33994 34168 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild exon 34252 34400 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild exon 34550 34966 . + . gene_id "RvY_00017"; transcript_id "RvY_00017.1"; Scaffold001 rebuild transcript 35401 36443 . + . gene_id "RvY_00018"; transcript_id "RvY_00018.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 35401 35919 . + . gene_id "RvY_00018"; transcript_id "RvY_00018.1"; Scaffold001 rebuild exon 36192 36443 . + . gene_id "RvY_00018"; transcript_id "RvY_00018.1"; Scaffold001 rebuild transcript 36493 37494 . + . gene_id "RvY_00019"; transcript_id "RvY_00019.1"; annotation "hypothetical protein."; Pfam "[dsrm] Double-stranded RNA binding motif"; Scaffold001 rebuild exon 36493 36697 . + . gene_id "RvY_00019"; transcript_id "RvY_00019.1"; Scaffold001 rebuild exon 36759 36868 . + . gene_id "RvY_00019"; transcript_id "RvY_00019.1"; Scaffold001 rebuild exon 37135 37494 . + . gene_id "RvY_00019"; transcript_id "RvY_00019.1"; Scaffold001 rebuild transcript 40345 41887 . - . gene_id "RvY_00020"; transcript_id "RvY_00020.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 40345 40897 . - . gene_id "RvY_00020"; transcript_id "RvY_00020.1"; Scaffold001 rebuild exon 41104 41698 . - . gene_id "RvY_00020"; transcript_id "RvY_00020.1"; Scaffold001 rebuild exon 41770 41887 . - . gene_id "RvY_00020"; transcript_id "RvY_00020.1"; Scaffold001 rebuild transcript 44061 45742 . - . gene_id "RvY_00021"; transcript_id "RvY_00021.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 44061 44515 . - . gene_id "RvY_00021"; transcript_id "RvY_00021.1"; Scaffold001 rebuild exon 45146 45254 . - . gene_id "RvY_00021"; transcript_id "RvY_00021.1"; Scaffold001 rebuild exon 45377 45742 . - . gene_id "RvY_00021"; transcript_id "RvY_00021.1"; Scaffold001 rebuild transcript 46894 47284 . + . gene_id "RvY_00022"; transcript_id "RvY_00022.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 46894 47067 . + . gene_id "RvY_00022"; transcript_id "RvY_00022.1"; Scaffold001 rebuild exon 47129 47284 . + . gene_id "RvY_00022"; transcript_id "RvY_00022.1"; Scaffold001 rebuild transcript 48318 49510 . - . gene_id "RvY_00023"; transcript_id "RvY_00023.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 48318 48471 . - . gene_id "RvY_00023"; transcript_id "RvY_00023.1"; Scaffold001 rebuild exon 48711 49510 . - . gene_id "RvY_00023"; transcript_id "RvY_00023.1"; Scaffold001 rebuild transcript 47615 48361 . - . gene_id "RvY_00023"; transcript_id "RvY_00023.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 47615 48361 . - . gene_id "RvY_00023"; transcript_id "RvY_00023.2"; Scaffold001 rebuild transcript 50042 53705 . + . gene_id "RvY_00024"; transcript_id "RvY_00024.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 50042 50459 . + . gene_id "RvY_00024"; transcript_id "RvY_00024.1"; Scaffold001 rebuild exon 50951 51070 . + . gene_id "RvY_00024"; transcript_id "RvY_00024.1"; Scaffold001 rebuild exon 51150 51299 . + . gene_id "RvY_00024"; transcript_id "RvY_00024.1"; Scaffold001 rebuild exon 51840 52262 . + . gene_id "RvY_00024"; transcript_id "RvY_00024.1"; Scaffold001 rebuild exon 52951 53705 . + . gene_id "RvY_00024"; transcript_id "RvY_00024.1"; Scaffold001 rebuild transcript 54332 56587 . + . gene_id "RvY_00025"; transcript_id "RvY_00025.1"; gene_name "ORB"; annotation "putative Cytoplasmic polyadenylation element-binding protein 1-B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"; KO "K02602"; similar_genes "CPE1B_XENLA(e-value:3.2e-50;bit-score:196.0)"; Scaffold001 rebuild exon 54332 55060 . + . gene_id "RvY_00025"; transcript_id "RvY_00025.1"; Scaffold001 rebuild exon 55365 55488 . + . gene_id "RvY_00025"; transcript_id "RvY_00025.1"; Scaffold001 rebuild exon 55576 55884 . + . gene_id "RvY_00025"; transcript_id "RvY_00025.1"; Scaffold001 rebuild exon 56292 56587 . + . gene_id "RvY_00025"; transcript_id "RvY_00025.1"; Scaffold001 rebuild transcript 57258 58565 . - . gene_id "RvY_00026"; transcript_id "RvY_00026.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 57258 57601 . - . gene_id "RvY_00026"; transcript_id "RvY_00026.1"; Scaffold001 rebuild exon 57767 58565 . - . gene_id "RvY_00026"; transcript_id "RvY_00026.1"; Scaffold001 rebuild transcript 60181 60732 . - . gene_id "RvY_00027"; transcript_id "RvY_00027.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 60181 60732 . - . gene_id "RvY_00027"; transcript_id "RvY_00027.1"; Scaffold001 rebuild transcript 60972 62176 . + . gene_id "RvY_00028"; transcript_id "RvY_00028.1"; annotation "hypothetical protein."; Pfam "[Reticulon]"; Scaffold001 rebuild exon 60972 61489 . + . gene_id "RvY_00028"; transcript_id "RvY_00028.1"; Scaffold001 rebuild exon 61810 62176 . + . gene_id "RvY_00028"; transcript_id "RvY_00028.1"; Scaffold001 rebuild transcript 62494 64927 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; gene_name "ENO"; annotation "Enolase"; Pfam "[Enolase_N] Enolase, N-terminal domain|[Enolase_C] Enolase, C-terminal TIM barrel domain"; CDD "Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions."; EC "EC4.2.1.11"; KO "K01689"; similar_genes "ENO_DROME(e-value:3.9e-59;bit-score:226.0)"; Scaffold001 rebuild exon 62494 62616 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 62691 62886 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 63057 63505 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 63874 64011 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 64090 64227 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 64292 64350 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 64632 64727 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild exon 64840 64927 . - . gene_id "RvY_00029"; transcript_id "RvY_00029.1"; Scaffold001 rebuild transcript 65194 67084 . - . gene_id "RvY_00030"; transcript_id "RvY_00030.1"; annotation "hypothetical protein."; Pfam "[GAS] Growth-arrest specific micro-tubule binding"; Scaffold001 rebuild exon 65194 65496 . - . gene_id "RvY_00030"; transcript_id "RvY_00030.1"; Scaffold001 rebuild exon 65849 66124 . - . gene_id "RvY_00030"; transcript_id "RvY_00030.1"; Scaffold001 rebuild exon 66389 67084 . - . gene_id "RvY_00030"; transcript_id "RvY_00030.1"; Scaffold001 rebuild transcript 69450 70734 . - . gene_id "RvY_00031"; transcript_id "RvY_00031.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 69450 70408 . - . gene_id "RvY_00031"; transcript_id "RvY_00031.1"; Scaffold001 rebuild exon 70668 70734 . - . gene_id "RvY_00031"; transcript_id "RvY_00031.1"; Scaffold001 rebuild transcript 71531 71862 . + . gene_id "RvY_00032"; transcript_id "RvY_00032.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 71531 71667 . + . gene_id "RvY_00032"; transcript_id "RvY_00032.1"; Scaffold001 rebuild exon 71835 71862 . + . gene_id "RvY_00032"; transcript_id "RvY_00032.1"; Scaffold001 rebuild transcript 72105 72380 . - . gene_id "RvY_00033"; transcript_id "RvY_00033.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 72105 72380 . - . gene_id "RvY_00033"; transcript_id "RvY_00033.1"; Scaffold001 rebuild transcript 72730 73461 . - . gene_id "RvY_00034"; transcript_id "RvY_00034.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 72730 73461 . - . gene_id "RvY_00034"; transcript_id "RvY_00034.1"; Scaffold001 rebuild transcript 73607 73936 . - . gene_id "RvY_00035"; transcript_id "RvY_00035.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 73607 73936 . - . gene_id "RvY_00035"; transcript_id "RvY_00035.1"; Scaffold001 rebuild transcript 77658 77879 . - . gene_id "RvY_00036"; transcript_id "RvY_00036.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 77658 77879 . - . gene_id "RvY_00036"; transcript_id "RvY_00036.1"; Scaffold001 rebuild transcript 78021 78515 . + . gene_id "RvY_00037"; transcript_id "RvY_00037.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 78021 78515 . + . gene_id "RvY_00037"; transcript_id "RvY_00037.1"; Scaffold001 rebuild transcript 80713 81330 . + . gene_id "RvY_00038"; transcript_id "RvY_00038.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 80713 81030 . + . gene_id "RvY_00038"; transcript_id "RvY_00038.1"; Scaffold001 rebuild exon 81244 81330 . + . gene_id "RvY_00038"; transcript_id "RvY_00038.1"; Scaffold001 rebuild transcript 82029 83522 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.1"; gene_name "Piwi_ago-like"; annotation "hypothetical protein."; Pfam "[Piwi]"; CDD "Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; similar_genes "(1,3)AGO3_DANRE(e-value:5.0e-23;bit-score:106.0)"; Scaffold001 rebuild exon 82029 82412 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.1"; Scaffold001 rebuild exon 82493 82566 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.1"; Scaffold001 rebuild exon 82657 82822 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.1"; Scaffold001 rebuild exon 83077 83388 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.1"; Scaffold001 rebuild exon 83499 83522 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.1"; Scaffold001 rebuild transcript 82361 83522 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.2"; gene_name "Piwi_ago-like"; annotation "hypothetical protein."; Pfam "[Piwi]"; CDD "Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; similar_genes "(1,3)AGO3_DANRE(e-value:5.0e-23;bit-score:106.0)"; Scaffold001 rebuild exon 82361 82822 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.2"; Scaffold001 rebuild exon 83077 83388 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.2"; Scaffold001 rebuild exon 83499 83522 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.2"; Scaffold001 rebuild transcript 82165 83522 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; gene_name "Piwi_ago-like"; annotation "hypothetical protein."; Pfam "[Piwi]"; CDD "Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; similar_genes "(1,3)AGO3_DANRE(e-value:5.0e-23;bit-score:106.0)"; Scaffold001 rebuild exon 82165 82194 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; Scaffold001 rebuild exon 82284 82412 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; Scaffold001 rebuild exon 82493 82566 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; Scaffold001 rebuild exon 82657 82822 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; Scaffold001 rebuild exon 83077 83388 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; Scaffold001 rebuild exon 83499 83522 . - . gene_id "RvY_00039"; transcript_id "RvY_00039.3"; Scaffold001 rebuild transcript 83946 84567 . - . gene_id "RvY_00040"; transcript_id "RvY_00040.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 83946 84097 . - . gene_id "RvY_00040"; transcript_id "RvY_00040.1"; Scaffold001 rebuild exon 84247 84257 . - . gene_id "RvY_00040"; transcript_id "RvY_00040.1"; Scaffold001 rebuild exon 84443 84567 . - . gene_id "RvY_00040"; transcript_id "RvY_00040.1"; Scaffold001 rebuild transcript 84630 85778 . - . gene_id "RvY_00041"; transcript_id "RvY_00041.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 84630 84791 . - . gene_id "RvY_00041"; transcript_id "RvY_00041.1"; Scaffold001 rebuild exon 85632 85778 . - . gene_id "RvY_00041"; transcript_id "RvY_00041.1"; Scaffold001 rebuild transcript 84598 84849 . - . gene_id "RvY_00041"; transcript_id "RvY_00041.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 84598 84849 . - . gene_id "RvY_00041"; transcript_id "RvY_00041.2"; Scaffold001 rebuild transcript 85954 90513 . - . gene_id "RvY_00042"; transcript_id "RvY_00042.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 85954 85960 . - . gene_id "RvY_00042"; transcript_id "RvY_00042.1"; Scaffold001 rebuild exon 90197 90513 . - . gene_id "RvY_00042"; transcript_id "RvY_00042.1"; Scaffold001 rebuild transcript 86760 86945 . + . gene_id "RvY_00043"; transcript_id "RvY_00043.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 86760 86945 . + . gene_id "RvY_00043"; transcript_id "RvY_00043.1"; Scaffold001 rebuild transcript 88148 92226 . + . gene_id "RvY_00044"; transcript_id "RvY_00044.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 88148 88933 . + . gene_id "RvY_00044"; transcript_id "RvY_00044.1"; Scaffold001 rebuild exon 90223 91933 . + . gene_id "RvY_00044"; transcript_id "RvY_00044.1"; Scaffold001 rebuild exon 91964 92226 . + . gene_id "RvY_00044"; transcript_id "RvY_00044.1"; Scaffold001 rebuild transcript 92497 93796 . + . gene_id "RvY_00045"; transcript_id "RvY_00045.1"; annotation "hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; similar_genes "UB2R1_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold001 rebuild exon 92497 92726 . + . gene_id "RvY_00045"; transcript_id "RvY_00045.1"; Scaffold001 rebuild exon 93349 93796 . + . gene_id "RvY_00045"; transcript_id "RvY_00045.1"; Scaffold001 rebuild transcript 96190 98382 . - . gene_id "RvY_00046"; transcript_id "RvY_00046.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 96190 98382 . - . gene_id "RvY_00046"; transcript_id "RvY_00046.1"; Scaffold001 rebuild transcript 98435 98998 . - . gene_id "RvY_00047"; transcript_id "RvY_00047.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 98435 98998 . - . gene_id "RvY_00047"; transcript_id "RvY_00047.1"; Scaffold001 rebuild transcript 99807 100938 . + . gene_id "RvY_00048"; transcript_id "RvY_00048.1"; annotation "hypothetical protein."; Pfam "[Enkurin] Calmodulin-binding"; Scaffold001 rebuild exon 99807 100046 . + . gene_id "RvY_00048"; transcript_id "RvY_00048.1"; Scaffold001 rebuild exon 100130 100384 . + . gene_id "RvY_00048"; transcript_id "RvY_00048.1"; Scaffold001 rebuild exon 100564 100938 . + . gene_id "RvY_00048"; transcript_id "RvY_00048.1"; Scaffold001 rebuild transcript 101490 102981 . - . gene_id "RvY_00049"; transcript_id "RvY_00049.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 101490 102139 . - . gene_id "RvY_00049"; transcript_id "RvY_00049.1"; Scaffold001 rebuild exon 102212 102394 . - . gene_id "RvY_00049"; transcript_id "RvY_00049.1"; Scaffold001 rebuild exon 102579 102981 . - . gene_id "RvY_00049"; transcript_id "RvY_00049.1"; Scaffold001 rebuild transcript 103346 103772 . - . gene_id "RvY_00050"; transcript_id "RvY_00050.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 103346 103489 . - . gene_id "RvY_00050"; transcript_id "RvY_00050.1"; Scaffold001 rebuild exon 103701 103772 . - . gene_id "RvY_00050"; transcript_id "RvY_00050.1"; Scaffold001 rebuild transcript 104242 104905 . + . gene_id "RvY_00051"; transcript_id "RvY_00051.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 104242 104320 . + . gene_id "RvY_00051"; transcript_id "RvY_00051.1"; Scaffold001 rebuild exon 104673 104905 . + . gene_id "RvY_00051"; transcript_id "RvY_00051.1"; Scaffold001 rebuild transcript 109594 111161 . - . gene_id "RvY_00052"; transcript_id "RvY_00052.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 109594 109925 . - . gene_id "RvY_00052"; transcript_id "RvY_00052.1"; Scaffold001 rebuild exon 110710 111003 . - . gene_id "RvY_00052"; transcript_id "RvY_00052.1"; Scaffold001 rebuild exon 111122 111161 . - . gene_id "RvY_00052"; transcript_id "RvY_00052.1"; Scaffold001 rebuild transcript 115706 115993 . - . gene_id "RvY_00053"; transcript_id "RvY_00053.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 115706 115993 . - . gene_id "RvY_00053"; transcript_id "RvY_00053.1"; Scaffold001 rebuild transcript 115332 115868 . - . gene_id "RvY_00053"; transcript_id "RvY_00053.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 115332 115577 . - . gene_id "RvY_00053"; transcript_id "RvY_00053.2"; Scaffold001 rebuild exon 115830 115868 . - . gene_id "RvY_00053"; transcript_id "RvY_00053.2"; Scaffold001 rebuild transcript 117739 117972 . + . gene_id "RvY_00054"; transcript_id "RvY_00054.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 117739 117972 . + . gene_id "RvY_00054"; transcript_id "RvY_00054.1"; Scaffold001 rebuild transcript 126203 126634 . - . gene_id "RvY_00055"; transcript_id "RvY_00055.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 126203 126634 . - . gene_id "RvY_00055"; transcript_id "RvY_00055.1"; Scaffold001 rebuild transcript 133096 133829 . + . gene_id "RvY_00056"; transcript_id "RvY_00056.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 133096 133363 . + . gene_id "RvY_00056"; transcript_id "RvY_00056.1"; Scaffold001 rebuild exon 133495 133829 . + . gene_id "RvY_00056"; transcript_id "RvY_00056.1"; Scaffold001 rebuild transcript 133905 134363 . - . gene_id "RvY_00057"; transcript_id "RvY_00057.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 133905 134363 . - . gene_id "RvY_00057"; transcript_id "RvY_00057.1"; Scaffold001 rebuild transcript 134479 134661 . - . gene_id "RvY_00058"; transcript_id "RvY_00058.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 134479 134661 . - . gene_id "RvY_00058"; transcript_id "RvY_00058.1"; Scaffold001 rebuild transcript 135359 135580 . - . gene_id "RvY_00059"; transcript_id "RvY_00059.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 135359 135580 . - . gene_id "RvY_00059"; transcript_id "RvY_00059.1"; Scaffold001 rebuild transcript 140201 140554 . + . gene_id "RvY_00060"; transcript_id "RvY_00060.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 140201 140554 . + . gene_id "RvY_00060"; transcript_id "RvY_00060.1"; Scaffold001 rebuild transcript 147334 149370 . - . gene_id "RvY_00061"; transcript_id "RvY_00061.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold001 rebuild exon 147334 148377 . - . gene_id "RvY_00061"; transcript_id "RvY_00061.1"; Scaffold001 rebuild exon 148530 148949 . - . gene_id "RvY_00061"; transcript_id "RvY_00061.1"; Scaffold001 rebuild exon 149074 149370 . - . gene_id "RvY_00061"; transcript_id "RvY_00061.1"; Scaffold001 rebuild transcript 149252 149545 . + . gene_id "RvY_00062"; transcript_id "RvY_00062.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 149252 149340 . + . gene_id "RvY_00062"; transcript_id "RvY_00062.1"; Scaffold001 rebuild exon 149413 149545 . + . gene_id "RvY_00062"; transcript_id "RvY_00062.1"; Scaffold001 rebuild transcript 149394 149615 . + . gene_id "RvY_00062"; transcript_id "RvY_00062.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 149394 149615 . + . gene_id "RvY_00062"; transcript_id "RvY_00062.2"; Scaffold001 rebuild transcript 151044 153794 . - . gene_id "RvY_00063"; transcript_id "RvY_00063.1"; gene_name "PRK08853"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold001 rebuild exon 151044 151193 . - . gene_id "RvY_00063"; transcript_id "RvY_00063.1"; Scaffold001 rebuild exon 152850 153523 . - . gene_id "RvY_00063"; transcript_id "RvY_00063.1"; Scaffold001 rebuild exon 153674 153794 . - . gene_id "RvY_00063"; transcript_id "RvY_00063.1"; Scaffold001 rebuild transcript 154585 156019 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; gene_name "PNO1"; annotation "RNA-binding protein PNO1"; Pfam "[KH_1] KH domain"; CDD "Predicted RNA-binding protein (contains KH domains) [General function prediction only]"; KO "K11884"; similar_genes "PNO1_CHICK(e-value:7.5e-75;bit-score:278.0)"; Scaffold001 rebuild exon 154585 154723 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; Scaffold001 rebuild exon 154825 154942 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; Scaffold001 rebuild exon 155067 155127 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; Scaffold001 rebuild exon 155295 155378 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; Scaffold001 rebuild exon 155600 155749 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; Scaffold001 rebuild exon 155822 156019 . - . gene_id "RvY_00064"; transcript_id "RvY_00064.1"; Scaffold001 rebuild transcript 160854 161060 . + . gene_id "RvY_00065"; transcript_id "RvY_00065.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 160854 161060 . + . gene_id "RvY_00065"; transcript_id "RvY_00065.1"; Scaffold001 rebuild transcript 164184 170059 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; gene_name "MDN1"; annotation "hypothetical protein."; Pfam "[CRAL_TRIO_2] Divergent CRAL/TRIO domain"; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; Scaffold001 rebuild exon 164184 164334 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild exon 164399 164488 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild exon 164559 164690 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild exon 164964 165375 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild exon 165542 165634 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild exon 165715 167511 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild exon 167578 170059 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.1"; Scaffold001 rebuild transcript 165605 170059 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.2"; gene_name "MDN1"; annotation "hypothetical protein."; Pfam "[CRAL_TRIO_2] Divergent CRAL/TRIO domain"; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; Scaffold001 rebuild exon 165605 165634 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.2"; Scaffold001 rebuild exon 165713 167511 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.2"; Scaffold001 rebuild exon 167578 170059 . - . gene_id "RvY_00066"; transcript_id "RvY_00066.2"; Scaffold001 rebuild transcript 172795 175771 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; annotation "putative Beta-galactosidase"; Pfam "[Glyco_hydro_42] Beta-galactosidase|[Glyco_hydro_35] Glycosyl hydrolases family 35"; EC "EC3.2.1.23"; similar_genes "BGAL_MOUSE(e-value:1.4e-31;bit-score:134.0)"; Scaffold001 rebuild exon 172795 172831 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 172924 173022 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 173170 173386 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 173636 173708 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 173783 173805 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 173882 174168 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 174282 174579 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 174657 175068 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild exon 175145 175771 . + . gene_id "RvY_00067"; transcript_id "RvY_00067.1"; Scaffold001 rebuild transcript 176215 176848 . - . gene_id "RvY_00068"; transcript_id "RvY_00068.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 176215 176475 . - . gene_id "RvY_00068"; transcript_id "RvY_00068.1"; Scaffold001 rebuild exon 176531 176848 . - . gene_id "RvY_00068"; transcript_id "RvY_00068.1"; Scaffold001 rebuild transcript 177789 179653 . - . gene_id "RvY_00069"; transcript_id "RvY_00069.1"; annotation "hypothetical protein."; Pfam "[RIB43A]"; Scaffold001 rebuild exon 177789 178232 . - . gene_id "RvY_00069"; transcript_id "RvY_00069.1"; Scaffold001 rebuild exon 178571 178811 . - . gene_id "RvY_00069"; transcript_id "RvY_00069.1"; Scaffold001 rebuild exon 178868 179090 . - . gene_id "RvY_00069"; transcript_id "RvY_00069.1"; Scaffold001 rebuild exon 179245 179326 . - . gene_id "RvY_00069"; transcript_id "RvY_00069.1"; Scaffold001 rebuild exon 179534 179653 . - . gene_id "RvY_00069"; transcript_id "RvY_00069.1"; Scaffold001 rebuild transcript 181864 184302 . + . gene_id "RvY_00070"; transcript_id "RvY_00070.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 181864 182332 . + . gene_id "RvY_00070"; transcript_id "RvY_00070.1"; Scaffold001 rebuild exon 183040 183213 . + . gene_id "RvY_00070"; transcript_id "RvY_00070.1"; Scaffold001 rebuild exon 183286 183543 . + . gene_id "RvY_00070"; transcript_id "RvY_00070.1"; Scaffold001 rebuild exon 183748 184109 . + . gene_id "RvY_00070"; transcript_id "RvY_00070.1"; Scaffold001 rebuild exon 184183 184302 . + . gene_id "RvY_00070"; transcript_id "RvY_00070.1"; Scaffold001 rebuild transcript 184567 185228 . + . gene_id "RvY_00071"; transcript_id "RvY_00071.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 184567 185118 . + . gene_id "RvY_00071"; transcript_id "RvY_00071.1"; Scaffold001 rebuild exon 185157 185228 . + . gene_id "RvY_00071"; transcript_id "RvY_00071.1"; Scaffold001 rebuild transcript 188562 189456 . - . gene_id "RvY_00072"; transcript_id "RvY_00072.1"; annotation "hypothetical protein."; Pfam "[NOT2_3_5] NOT2 / NOT3 / NOT5 family"; Scaffold001 rebuild exon 188562 188675 . - . gene_id "RvY_00072"; transcript_id "RvY_00072.1"; Scaffold001 rebuild exon 188735 188860 . - . gene_id "RvY_00072"; transcript_id "RvY_00072.1"; Scaffold001 rebuild exon 189143 189281 . - . gene_id "RvY_00072"; transcript_id "RvY_00072.1"; Scaffold001 rebuild exon 189341 189456 . - . gene_id "RvY_00072"; transcript_id "RvY_00072.1"; Scaffold001 rebuild transcript 190082 191132 . + . gene_id "RvY_00073"; transcript_id "RvY_00073.1"; gene_name "EGD2"; annotation "nascent polypeptide-associated complex subunit alpha"; Pfam "[NAC]"; KO "K03626"; similar_genes "NACA2_HUMAN(e-value:3.4e-09;bit-score:60.0)"; Scaffold001 rebuild exon 190082 190381 . + . gene_id "RvY_00073"; transcript_id "RvY_00073.1"; Scaffold001 rebuild exon 190444 190524 . + . gene_id "RvY_00073"; transcript_id "RvY_00073.1"; Scaffold001 rebuild exon 190709 191048 . + . gene_id "RvY_00073"; transcript_id "RvY_00073.1"; Scaffold001 rebuild exon 191110 191132 . + . gene_id "RvY_00073"; transcript_id "RvY_00073.1"; Scaffold001 rebuild transcript 194538 198136 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; gene_name "MRP_assoc_pro"; annotation "(1)putative Canalicular multispecific organic anion transporter 1(2,4)putative ABC transporter C family member 7(3)Canalicular multispecific organic anion transporter 1"; Pfam "(2,4)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(2,3,4)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; EC "(2,4)EC3.6.3.44"; similar_genes "(1)MRP2_MOUSE(e-value:4.0e-27;bit-score:119.0)(2,4)AB7C_ARATH(e-value:5.8e-41;bit-score:165.0)(3)MRP2_RABIT(e-value:6.0e-64;bit-score:241.0)"; Scaffold001 rebuild exon 194538 194567 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 194661 194837 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 194912 195043 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 195116 195259 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 195325 195453 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 195540 195601 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 195668 195796 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 195860 196048 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 196136 196313 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 196639 196893 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 196969 197100 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 197171 197389 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild exon 197579 198136 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.1"; Scaffold001 rebuild transcript 198187 201789 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; gene_name "MRP_assoc_pro"; annotation "(1)putative Canalicular multispecific organic anion transporter 1(2,4)putative ABC transporter C family member 7(3)Canalicular multispecific organic anion transporter 1"; Pfam "(2,4)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(2,3,4)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; EC "(2,4)EC3.6.3.44"; similar_genes "(1)MRP2_MOUSE(e-value:4.0e-27;bit-score:119.0)(2,4)AB7C_ARATH(e-value:5.8e-41;bit-score:165.0)(3)MRP2_RABIT(e-value:6.0e-64;bit-score:241.0)"; Scaffold001 rebuild exon 198187 198288 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 198375 198418 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 198495 198549 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 198693 199278 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 199484 199725 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 199808 199967 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 200049 200157 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 200234 200372 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 200470 200612 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 200678 200783 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 200889 201047 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 201171 201452 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 201523 201602 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild exon 201678 201789 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.2"; Scaffold001 rebuild transcript 196696 200161 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; gene_name "MRP_assoc_pro"; annotation "(1)putative Canalicular multispecific organic anion transporter 1(2,4)putative ABC transporter C family member 7(3)Canalicular multispecific organic anion transporter 1"; Pfam "(2,4)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(2,3,4)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; EC "(2,4)EC3.6.3.44"; similar_genes "(1)MRP2_MOUSE(e-value:4.0e-27;bit-score:119.0)(2,4)AB7C_ARATH(e-value:5.8e-41;bit-score:165.0)(3)MRP2_RABIT(e-value:6.0e-64;bit-score:241.0)"; Scaffold001 rebuild exon 196696 196893 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 196969 197100 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 197171 197389 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 197579 198055 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 198132 198150 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 198221 198288 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 198375 198418 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 198495 198549 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 198693 199278 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 199484 199725 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 199808 199967 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild exon 200049 200161 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.3"; Scaffold001 rebuild transcript 198247 201789 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; gene_name "MRP_assoc_pro"; annotation "(1)putative Canalicular multispecific organic anion transporter 1(2,4)putative ABC transporter C family member 7(3)Canalicular multispecific organic anion transporter 1"; Pfam "(2,4)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(2,3,4)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; EC "(2,4)EC3.6.3.44"; similar_genes "(1)MRP2_MOUSE(e-value:4.0e-27;bit-score:119.0)(2,4)AB7C_ARATH(e-value:5.8e-41;bit-score:165.0)(3)MRP2_RABIT(e-value:6.0e-64;bit-score:241.0)"; Scaffold001 rebuild exon 198247 198288 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 198375 198418 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 198495 198549 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 198693 199278 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 199484 199725 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 199808 199967 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 200049 200157 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 200234 200372 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 200470 200612 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 200678 200783 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 200889 201047 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 201171 201452 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 201523 201602 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild exon 201678 201789 . + . gene_id "RvY_00074"; transcript_id "RvY_00074.4"; Scaffold001 rebuild transcript 202295 205944 . - . gene_id "RvY_00075"; transcript_id "RvY_00075.1"; gene_name "EGF_CA"; annotation "hypothetical protein."; Pfam "[EGF] EGF-like domain|[EGF_CA] Calcium-binding EGF domain"; CDD "Calcium-binding EGF-like domain."; similar_genes "NOTC1_DANRE(e-value:1.0e-12;bit-score:71.0)"; Scaffold001 rebuild exon 202295 202729 . - . gene_id "RvY_00075"; transcript_id "RvY_00075.1"; Scaffold001 rebuild exon 203230 203348 . - . gene_id "RvY_00075"; transcript_id "RvY_00075.1"; Scaffold001 rebuild exon 204905 205096 . - . gene_id "RvY_00075"; transcript_id "RvY_00075.1"; Scaffold001 rebuild exon 205911 205944 . - . gene_id "RvY_00075"; transcript_id "RvY_00075.1"; Scaffold001 rebuild transcript 206561 207184 . - . gene_id "RvY_00076"; transcript_id "RvY_00076.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 206561 207184 . - . gene_id "RvY_00076"; transcript_id "RvY_00076.1"; Scaffold001 rebuild transcript 207563 208230 . + . gene_id "RvY_00077"; transcript_id "RvY_00077.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 207563 207574 . + . gene_id "RvY_00077"; transcript_id "RvY_00077.1"; Scaffold001 rebuild exon 207766 208230 . + . gene_id "RvY_00077"; transcript_id "RvY_00077.1"; Scaffold001 rebuild transcript 208474 211998 . - . gene_id "RvY_00078"; transcript_id "RvY_00078.1"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat"; Scaffold001 rebuild exon 208474 210677 . - . gene_id "RvY_00078"; transcript_id "RvY_00078.1"; Scaffold001 rebuild exon 210816 211998 . - . gene_id "RvY_00078"; transcript_id "RvY_00078.1"; Scaffold001 rebuild transcript 212494 213231 . + . gene_id "RvY_00079"; transcript_id "RvY_00079.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 212494 213231 . + . gene_id "RvY_00079"; transcript_id "RvY_00079.1"; Scaffold001 rebuild transcript 214378 216534 . - . gene_id "RvY_00080"; transcript_id "RvY_00080.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 214378 216534 . - . gene_id "RvY_00080"; transcript_id "RvY_00080.1"; Scaffold001 rebuild transcript 216901 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 216901 217487 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.1"; Scaffold001 rebuild exon 217789 218186 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.1"; Scaffold001 rebuild exon 218728 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.1"; Scaffold001 rebuild transcript 217775 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 217775 218186 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.2"; Scaffold001 rebuild exon 218728 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.2"; Scaffold001 rebuild transcript 217796 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 217796 218186 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.3"; Scaffold001 rebuild exon 218728 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.3"; Scaffold001 rebuild transcript 217892 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 217892 218186 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.4"; Scaffold001 rebuild exon 218728 219167 . + . gene_id "RvY_00081"; transcript_id "RvY_00081.4"; Scaffold001 rebuild transcript 219446 220515 . - . gene_id "RvY_00082"; transcript_id "RvY_00082.1"; gene_name "DNAL1"; annotation "putative Dynein light chain 1, axonemal"; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; KO "K10411"; similar_genes "DNAL1_MOUSE(e-value:1.5e-41;bit-score:167.0)"; Scaffold001 rebuild exon 219446 219570 . - . gene_id "RvY_00082"; transcript_id "RvY_00082.1"; Scaffold001 rebuild exon 219701 219937 . - . gene_id "RvY_00082"; transcript_id "RvY_00082.1"; Scaffold001 rebuild exon 220157 220328 . - . gene_id "RvY_00082"; transcript_id "RvY_00082.1"; Scaffold001 rebuild exon 220400 220444 . - . gene_id "RvY_00082"; transcript_id "RvY_00082.1"; Scaffold001 rebuild exon 220510 220515 . - . gene_id "RvY_00082"; transcript_id "RvY_00082.1"; Scaffold001 rebuild transcript 220824 224072 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; gene_name "PRK05434"; annotation "putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase"; Pfam "[Sulfatase]|[iPGM_N] BPG-independent PGAM N-terminus (iPGM_N)|[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|[Metalloenzyme] Metalloenzyme superfamily"; CDD "phosphoglyceromutase; Provisional"; EC "EC5.4.2.1"; similar_genes "GPMI_CELJU(e-value:4.4e-39;bit-score:159.0)"; Scaffold001 rebuild exon 220824 220981 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 221089 221223 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 221321 221438 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 221687 221962 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 222265 222366 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 222466 222921 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 223437 223723 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild exon 223994 224072 . - . gene_id "RvY_00083"; transcript_id "RvY_00083.1"; Scaffold001 rebuild transcript 224582 228107 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; annotation "hypothetical protein."; Pfam "[Pyr_redox] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase"; EC "EC1.-.-.-"; similar_genes "AIFM3_HUMAN(e-value:4.5e-09;bit-score:59.0)"; Scaffold001 rebuild exon 224582 224732 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 224753 224828 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 224898 225002 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 225059 225173 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 225273 225349 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 225439 225586 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 225674 225789 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 225925 226055 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 226149 226240 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 226372 226458 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 226550 226867 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 226951 227060 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 227171 227241 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 227292 227478 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild exon 228050 228107 . - . gene_id "RvY_00084"; transcript_id "RvY_00084.1"; Scaffold001 rebuild transcript 231005 232785 . + . gene_id "RvY_00085"; transcript_id "RvY_00085.1"; gene_name "LamG"; annotation "hypothetical protein."; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain."; Scaffold001 rebuild exon 231005 231089 . + . gene_id "RvY_00085"; transcript_id "RvY_00085.1"; Scaffold001 rebuild exon 231587 231969 . + . gene_id "RvY_00085"; transcript_id "RvY_00085.1"; Scaffold001 rebuild exon 232198 232501 . + . gene_id "RvY_00085"; transcript_id "RvY_00085.1"; Scaffold001 rebuild exon 232563 232720 . + . gene_id "RvY_00085"; transcript_id "RvY_00085.1"; Scaffold001 rebuild exon 232780 232785 . + . gene_id "RvY_00085"; transcript_id "RvY_00085.1"; Scaffold001 rebuild transcript 235087 237598 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; gene_name "(1)PIAS(2)zf-MIZ"; annotation "(1)protein inhibitor of activated STAT(2)hypothetical protein."; Pfam "[zf-MIZ] MIZ/SP-RING zinc finger"; CDD "MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation."; KO "(1)K04706"; Scaffold001 rebuild exon 235087 235148 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild exon 235231 235343 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild exon 235401 235638 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild exon 236170 236272 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild exon 236363 236524 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild exon 236659 236858 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild exon 236920 237598 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.1"; Scaffold001 rebuild transcript 235087 237598 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; gene_name "(1)PIAS(2)zf-MIZ"; annotation "(1)protein inhibitor of activated STAT(2)hypothetical protein."; Pfam "[zf-MIZ] MIZ/SP-RING zinc finger"; CDD "MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation."; KO "(1)K04706"; Scaffold001 rebuild exon 235087 235148 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild exon 235231 235343 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild exon 235401 235638 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild exon 236203 236272 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild exon 236363 236524 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild exon 236659 236858 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild exon 236920 237598 . - . gene_id "RvY_00086"; transcript_id "RvY_00086.2"; Scaffold001 rebuild transcript 238016 239311 . + . gene_id "RvY_00087"; transcript_id "RvY_00087.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 238016 238694 . + . gene_id "RvY_00087"; transcript_id "RvY_00087.1"; Scaffold001 rebuild exon 238829 238956 . + . gene_id "RvY_00087"; transcript_id "RvY_00087.1"; Scaffold001 rebuild exon 239015 239311 . + . gene_id "RvY_00087"; transcript_id "RvY_00087.1"; Scaffold001 rebuild transcript 239308 239589 . - . gene_id "RvY_00088"; transcript_id "RvY_00088.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 239308 239589 . - . gene_id "RvY_00088"; transcript_id "RvY_00088.1"; Scaffold001 rebuild transcript 240873 241172 . - . gene_id "RvY_00089"; transcript_id "RvY_00089.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 240873 241172 . - . gene_id "RvY_00089"; transcript_id "RvY_00089.1"; Scaffold001 rebuild transcript 241712 244764 . - . gene_id "RvY_00090"; transcript_id "RvY_00090.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold001 rebuild exon 241712 241938 . - . gene_id "RvY_00090"; transcript_id "RvY_00090.1"; Scaffold001 rebuild exon 242187 242252 . - . gene_id "RvY_00090"; transcript_id "RvY_00090.1"; Scaffold001 rebuild exon 242449 242761 . - . gene_id "RvY_00090"; transcript_id "RvY_00090.1"; Scaffold001 rebuild exon 243300 243578 . - . gene_id "RvY_00090"; transcript_id "RvY_00090.1"; Scaffold001 rebuild exon 244231 244764 . - . gene_id "RvY_00090"; transcript_id "RvY_00090.1"; Scaffold001 rebuild transcript 244953 245237 . - . gene_id "RvY_00091"; transcript_id "RvY_00091.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 244953 245237 . - . gene_id "RvY_00091"; transcript_id "RvY_00091.1"; Scaffold001 rebuild transcript 246284 247531 . - . gene_id "RvY_00092"; transcript_id "RvY_00092.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 246284 246376 . - . gene_id "RvY_00092"; transcript_id "RvY_00092.1"; Scaffold001 rebuild exon 246733 246963 . - . gene_id "RvY_00092"; transcript_id "RvY_00092.1"; Scaffold001 rebuild exon 247034 247189 . - . gene_id "RvY_00092"; transcript_id "RvY_00092.1"; Scaffold001 rebuild exon 247427 247531 . - . gene_id "RvY_00092"; transcript_id "RvY_00092.1"; Scaffold001 rebuild transcript 248201 250748 . + . gene_id "RvY_00093"; transcript_id "RvY_00093.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 248201 248470 . + . gene_id "RvY_00093"; transcript_id "RvY_00093.1"; Scaffold001 rebuild exon 249009 249206 . + . gene_id "RvY_00093"; transcript_id "RvY_00093.1"; Scaffold001 rebuild exon 249390 249599 . + . gene_id "RvY_00093"; transcript_id "RvY_00093.1"; Scaffold001 rebuild exon 249653 249868 . + . gene_id "RvY_00093"; transcript_id "RvY_00093.1"; Scaffold001 rebuild exon 250119 250748 . + . gene_id "RvY_00093"; transcript_id "RvY_00093.1"; Scaffold001 rebuild transcript 251862 252817 . - . gene_id "RvY_00094"; transcript_id "RvY_00094.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 251862 252068 . - . gene_id "RvY_00094"; transcript_id "RvY_00094.1"; Scaffold001 rebuild exon 252147 252271 . - . gene_id "RvY_00094"; transcript_id "RvY_00094.1"; Scaffold001 rebuild exon 252543 252614 . - . gene_id "RvY_00094"; transcript_id "RvY_00094.1"; Scaffold001 rebuild exon 252754 252817 . - . gene_id "RvY_00094"; transcript_id "RvY_00094.1"; Scaffold001 rebuild transcript 252842 253171 . - . gene_id "RvY_00095"; transcript_id "RvY_00095.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 252842 253171 . - . gene_id "RvY_00095"; transcript_id "RvY_00095.1"; Scaffold001 rebuild transcript 253341 254061 . - . gene_id "RvY_00096"; transcript_id "RvY_00096.1"; gene_name "Sumo"; annotation "hypothetical protein."; Pfam "[ubiquitin] Ubiquitin family|[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as ""Smt3"" and ""sentrin"" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases."; Scaffold001 rebuild exon 253341 253444 . - . gene_id "RvY_00096"; transcript_id "RvY_00096.1"; Scaffold001 rebuild exon 253528 253655 . - . gene_id "RvY_00096"; transcript_id "RvY_00096.1"; Scaffold001 rebuild exon 253718 254061 . - . gene_id "RvY_00096"; transcript_id "RvY_00096.1"; Scaffold001 rebuild transcript 254663 256937 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 254663 254975 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; Scaffold001 rebuild exon 255145 255326 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; Scaffold001 rebuild exon 255404 255542 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; Scaffold001 rebuild exon 255925 256253 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; Scaffold001 rebuild exon 256316 256408 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; Scaffold001 rebuild exon 256689 256937 . + . gene_id "RvY_00097"; transcript_id "RvY_00097.1"; Scaffold001 rebuild transcript 257666 263318 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; gene_name "PEP_TPR_lipo"; annotation "putative RNA polymerase-associated protein CTR9 homolog"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; KO "K15176"; similar_genes "CTR9_MOUSE(e-value:3.1e-29;bit-score:126.0)"; Scaffold001 rebuild exon 257666 257940 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 258164 258487 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 258936 259174 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 259235 259296 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 259396 259898 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 260369 260783 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 261161 261460 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 261680 262358 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild exon 262645 263318 . - . gene_id "RvY_00098"; transcript_id "RvY_00098.1"; Scaffold001 rebuild transcript 264948 265468 . - . gene_id "RvY_00099"; transcript_id "RvY_00099.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 264948 265182 . - . gene_id "RvY_00099"; transcript_id "RvY_00099.1"; Scaffold001 rebuild exon 265272 265468 . - . gene_id "RvY_00099"; transcript_id "RvY_00099.1"; Scaffold001 rebuild transcript 265792 265992 . + . gene_id "RvY_00100"; transcript_id "RvY_00100.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 265792 265992 . + . gene_id "RvY_00100"; transcript_id "RvY_00100.1"; Scaffold001 rebuild transcript 266127 266441 . - . gene_id "RvY_00101"; transcript_id "RvY_00101.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 266127 266257 . - . gene_id "RvY_00101"; transcript_id "RvY_00101.1"; Scaffold001 rebuild exon 266324 266441 . - . gene_id "RvY_00101"; transcript_id "RvY_00101.1"; Scaffold001 rebuild transcript 267544 268447 . + . gene_id "RvY_00102"; transcript_id "RvY_00102.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 267544 267705 . + . gene_id "RvY_00102"; transcript_id "RvY_00102.1"; Scaffold001 rebuild exon 267890 268178 . + . gene_id "RvY_00102"; transcript_id "RvY_00102.1"; Scaffold001 rebuild exon 268239 268447 . + . gene_id "RvY_00102"; transcript_id "RvY_00102.1"; Scaffold001 rebuild transcript 269392 270915 . + . gene_id "RvY_00103"; transcript_id "RvY_00103.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 269392 269487 . + . gene_id "RvY_00103"; transcript_id "RvY_00103.1"; Scaffold001 rebuild exon 269964 270547 . + . gene_id "RvY_00103"; transcript_id "RvY_00103.1"; Scaffold001 rebuild exon 270635 270700 . + . gene_id "RvY_00103"; transcript_id "RvY_00103.1"; Scaffold001 rebuild exon 270792 270915 . + . gene_id "RvY_00103"; transcript_id "RvY_00103.1"; Scaffold001 rebuild transcript 271679 272710 . + . gene_id "RvY_00104"; transcript_id "RvY_00104.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 271679 271790 . + . gene_id "RvY_00104"; transcript_id "RvY_00104.1"; Scaffold001 rebuild exon 272070 272579 . + . gene_id "RvY_00104"; transcript_id "RvY_00104.1"; Scaffold001 rebuild exon 272682 272710 . + . gene_id "RvY_00104"; transcript_id "RvY_00104.1"; Scaffold001 rebuild transcript 272744 274066 . + . gene_id "RvY_00105"; transcript_id "RvY_00105.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 272744 272892 . + . gene_id "RvY_00105"; transcript_id "RvY_00105.1"; Scaffold001 rebuild exon 273799 274066 . + . gene_id "RvY_00105"; transcript_id "RvY_00105.1"; Scaffold001 rebuild transcript 274652 275601 . - . gene_id "RvY_00106"; transcript_id "RvY_00106.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 274652 274743 . - . gene_id "RvY_00106"; transcript_id "RvY_00106.1"; Scaffold001 rebuild exon 275256 275601 . - . gene_id "RvY_00106"; transcript_id "RvY_00106.1"; Scaffold001 rebuild transcript 275607 278018 . - . gene_id "RvY_00107"; transcript_id "RvY_00107.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 275607 275700 . - . gene_id "RvY_00107"; transcript_id "RvY_00107.1"; Scaffold001 rebuild exon 275853 276583 . - . gene_id "RvY_00107"; transcript_id "RvY_00107.1"; Scaffold001 rebuild exon 276979 277262 . - . gene_id "RvY_00107"; transcript_id "RvY_00107.1"; Scaffold001 rebuild exon 277898 278018 . - . gene_id "RvY_00107"; transcript_id "RvY_00107.1"; Scaffold001 rebuild transcript 278392 279977 . - . gene_id "RvY_00108"; transcript_id "RvY_00108.1"; annotation "hypothetical protein."; Pfam "[rve] Integrase core domain"; Scaffold001 rebuild exon 278392 278823 . - . gene_id "RvY_00108"; transcript_id "RvY_00108.1"; Scaffold001 rebuild exon 279726 279894 . - . gene_id "RvY_00108"; transcript_id "RvY_00108.1"; Scaffold001 rebuild exon 279964 279977 . - . gene_id "RvY_00108"; transcript_id "RvY_00108.1"; Scaffold001 rebuild transcript 280451 281148 . + . gene_id "RvY_00109"; transcript_id "RvY_00109.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 280451 280812 . + . gene_id "RvY_00109"; transcript_id "RvY_00109.1"; Scaffold001 rebuild exon 280875 281148 . + . gene_id "RvY_00109"; transcript_id "RvY_00109.1"; Scaffold001 rebuild transcript 283238 283516 . - . gene_id "RvY_00110"; transcript_id "RvY_00110.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold001 rebuild exon 283238 283516 . - . gene_id "RvY_00110"; transcript_id "RvY_00110.1"; Scaffold001 rebuild transcript 284503 284844 . - . gene_id "RvY_00111"; transcript_id "RvY_00111.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold001 rebuild exon 284503 284844 . - . gene_id "RvY_00111"; transcript_id "RvY_00111.1"; Scaffold001 rebuild transcript 286470 287072 . - . gene_id "RvY_00112"; transcript_id "RvY_00112.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 286470 287072 . - . gene_id "RvY_00112"; transcript_id "RvY_00112.1"; Scaffold001 rebuild transcript 289444 290079 . - . gene_id "RvY_00113"; transcript_id "RvY_00113.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 289444 290079 . - . gene_id "RvY_00113"; transcript_id "RvY_00113.1"; Scaffold001 rebuild transcript 290445 291257 . - . gene_id "RvY_00114"; transcript_id "RvY_00114.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 290445 290684 . - . gene_id "RvY_00114"; transcript_id "RvY_00114.1"; Scaffold001 rebuild exon 290703 291257 . - . gene_id "RvY_00114"; transcript_id "RvY_00114.1"; Scaffold001 rebuild transcript 292923 293144 . + . gene_id "RvY_00115"; transcript_id "RvY_00115.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 292923 293144 . + . gene_id "RvY_00115"; transcript_id "RvY_00115.1"; Scaffold001 rebuild transcript 293904 294631 . + . gene_id "RvY_00116"; transcript_id "RvY_00116.1"; gene_name "Rab1_Ypt1"; annotation "Ras-related protein Rab-1A"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; similar_genes "RAB1A_DICDI(e-value:7.6e-58;bit-score:221.0)"; Scaffold001 rebuild exon 293904 294098 . + . gene_id "RvY_00116"; transcript_id "RvY_00116.1"; Scaffold001 rebuild exon 294191 294631 . + . gene_id "RvY_00116"; transcript_id "RvY_00116.1"; Scaffold001 rebuild transcript 294814 296730 . - . gene_id "RvY_00117"; transcript_id "RvY_00117.1"; gene_name "CTGF"; annotation "connective tissue growth factor"; Pfam "[IGFBP] Insulin-like growth factor binding protein|[VWC] von Willebrand factor type C domain"; KO "K06827"; Scaffold001 rebuild exon 294814 295065 . - . gene_id "RvY_00117"; transcript_id "RvY_00117.1"; Scaffold001 rebuild exon 295127 295527 . - . gene_id "RvY_00117"; transcript_id "RvY_00117.1"; Scaffold001 rebuild exon 295666 295879 . - . gene_id "RvY_00117"; transcript_id "RvY_00117.1"; Scaffold001 rebuild exon 296644 296730 . - . gene_id "RvY_00117"; transcript_id "RvY_00117.1"; Scaffold001 rebuild transcript 296840 297220 . + . gene_id "RvY_00118"; transcript_id "RvY_00118.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 296840 297220 . + . gene_id "RvY_00118"; transcript_id "RvY_00118.1"; Scaffold001 rebuild transcript 297582 297806 . + . gene_id "RvY_00119"; transcript_id "RvY_00119.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 297582 297806 . + . gene_id "RvY_00119"; transcript_id "RvY_00119.1"; Scaffold001 rebuild transcript 300667 301131 . + . gene_id "RvY_00120"; transcript_id "RvY_00120.2"; gene_name "RP-L37Ae"; annotation "putative 60S ribosomal protein L37a"; Pfam "[Ribosomal_L37ae] Ribosomal L37ae protein family"; CDD "60S ribosomal protein L37a; Provisional"; KO "K02921"; similar_genes "RL37A_OSTOS(e-value:8.5e-38;bit-score:155.0)"; Scaffold001 rebuild exon 300667 300669 . + . gene_id "RvY_00120"; transcript_id "RvY_00120.2"; Scaffold001 rebuild exon 300729 300857 . + . gene_id "RvY_00120"; transcript_id "RvY_00120.2"; Scaffold001 rebuild exon 300920 301002 . + . gene_id "RvY_00120"; transcript_id "RvY_00120.2"; Scaffold001 rebuild exon 301068 301131 . + . gene_id "RvY_00120"; transcript_id "RvY_00120.2"; Scaffold001 rebuild transcript 298798 299691 . - . gene_id "RvY_00121"; transcript_id "RvY_00121.1"; annotation "hypothetical protein."; Pfam "[Transcrip_reg] Transcriptional regulator"; Scaffold001 rebuild exon 298798 299691 . - . gene_id "RvY_00121"; transcript_id "RvY_00121.1"; Scaffold001 rebuild transcript 301694 303071 . - . gene_id "RvY_00122"; transcript_id "RvY_00122.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 301694 302136 . - . gene_id "RvY_00122"; transcript_id "RvY_00122.1"; Scaffold001 rebuild exon 302352 302613 . - . gene_id "RvY_00122"; transcript_id "RvY_00122.1"; Scaffold001 rebuild exon 302772 302843 . - . gene_id "RvY_00122"; transcript_id "RvY_00122.1"; Scaffold001 rebuild exon 302904 303071 . - . gene_id "RvY_00122"; transcript_id "RvY_00122.1"; Scaffold001 rebuild transcript 302947 303348 . + . gene_id "RvY_00123"; transcript_id "RvY_00123.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 302947 303348 . + . gene_id "RvY_00123"; transcript_id "RvY_00123.1"; Scaffold001 rebuild transcript 303275 303750 . + . gene_id "RvY_00123"; transcript_id "RvY_00123.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 303275 303503 . + . gene_id "RvY_00123"; transcript_id "RvY_00123.2"; Scaffold001 rebuild exon 303677 303750 . + . gene_id "RvY_00123"; transcript_id "RvY_00123.2"; Scaffold001 rebuild transcript 305404 309114 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold001 rebuild exon 305404 305773 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 306120 306263 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 306407 306660 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 306957 307219 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 307285 307457 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 307727 308008 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 308070 308243 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 308376 308501 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild exon 308774 309114 . + . gene_id "RvY_00124"; transcript_id "RvY_00124.1"; Scaffold001 rebuild transcript 309768 309953 . + . gene_id "RvY_00125"; transcript_id "RvY_00125.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 309768 309953 . + . gene_id "RvY_00125"; transcript_id "RvY_00125.1"; Scaffold001 rebuild transcript 311646 312549 . - . gene_id "RvY_00126"; transcript_id "RvY_00126.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 311646 311681 . - . gene_id "RvY_00126"; transcript_id "RvY_00126.1"; Scaffold001 rebuild exon 312226 312549 . - . gene_id "RvY_00126"; transcript_id "RvY_00126.1"; Scaffold001 rebuild transcript 312566 313258 . - . gene_id "RvY_00127"; transcript_id "RvY_00127.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 312566 313258 . - . gene_id "RvY_00127"; transcript_id "RvY_00127.1"; Scaffold001 rebuild transcript 316178 316924 . - . gene_id "RvY_00128"; transcript_id "RvY_00128.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 316178 316924 . - . gene_id "RvY_00128"; transcript_id "RvY_00128.1"; Scaffold001 rebuild transcript 316863 317366 . - . gene_id "RvY_00128"; transcript_id "RvY_00128.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 316863 317366 . - . gene_id "RvY_00128"; transcript_id "RvY_00128.2"; Scaffold001 rebuild transcript 317664 318894 . - . gene_id "RvY_00129"; transcript_id "RvY_00129.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 317664 318565 . - . gene_id "RvY_00129"; transcript_id "RvY_00129.1"; Scaffold001 rebuild exon 318660 318894 . - . gene_id "RvY_00129"; transcript_id "RvY_00129.1"; Scaffold001 rebuild transcript 322095 323054 . + . gene_id "RvY_00130"; transcript_id "RvY_00130.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 322095 322413 . + . gene_id "RvY_00130"; transcript_id "RvY_00130.1"; Scaffold001 rebuild exon 322498 322561 . + . gene_id "RvY_00130"; transcript_id "RvY_00130.1"; Scaffold001 rebuild exon 322644 322801 . + . gene_id "RvY_00130"; transcript_id "RvY_00130.1"; Scaffold001 rebuild exon 323029 323054 . + . gene_id "RvY_00130"; transcript_id "RvY_00130.1"; Scaffold001 rebuild transcript 328270 331028 . - . gene_id "RvY_00131"; transcript_id "RvY_00131.1"; annotation "hypothetical protein."; Pfam "[RAI16-like] Retinoic acid induced 16-like protein"; similar_genes "F16B2_DANRE(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 328270 328623 . - . gene_id "RvY_00131"; transcript_id "RvY_00131.1"; Scaffold001 rebuild exon 328981 329151 . - . gene_id "RvY_00131"; transcript_id "RvY_00131.1"; Scaffold001 rebuild exon 329236 330084 . - . gene_id "RvY_00131"; transcript_id "RvY_00131.1"; Scaffold001 rebuild exon 330324 331028 . - . gene_id "RvY_00131"; transcript_id "RvY_00131.1"; Scaffold001 rebuild transcript 332529 334014 . + . gene_id "RvY_00132"; transcript_id "RvY_00132.1"; gene_name "K08076"; annotation "astacin [EC:3.4.24.21]"; Pfam "[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.-|EC3.4.24.21"; KO "K08076"; similar_genes "BP10_PARLI(e-value:1.3e-06;bit-score:51.0)"; Scaffold001 rebuild exon 332529 332616 . + . gene_id "RvY_00132"; transcript_id "RvY_00132.1"; Scaffold001 rebuild exon 332686 332751 . + . gene_id "RvY_00132"; transcript_id "RvY_00132.1"; Scaffold001 rebuild exon 332838 332935 . + . gene_id "RvY_00132"; transcript_id "RvY_00132.1"; Scaffold001 rebuild exon 333001 333257 . + . gene_id "RvY_00132"; transcript_id "RvY_00132.1"; Scaffold001 rebuild exon 333516 334014 . + . gene_id "RvY_00132"; transcript_id "RvY_00132.1"; Scaffold001 rebuild transcript 334106 334997 . - . gene_id "RvY_00133"; transcript_id "RvY_00133.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 334106 334424 . - . gene_id "RvY_00133"; transcript_id "RvY_00133.1"; Scaffold001 rebuild exon 334626 334723 . - . gene_id "RvY_00133"; transcript_id "RvY_00133.1"; Scaffold001 rebuild exon 334905 334997 . - . gene_id "RvY_00133"; transcript_id "RvY_00133.1"; Scaffold001 rebuild transcript 337469 337879 . + . gene_id "RvY_00134"; transcript_id "RvY_00134.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 337469 337579 . + . gene_id "RvY_00134"; transcript_id "RvY_00134.1"; Scaffold001 rebuild exon 337844 337879 . + . gene_id "RvY_00134"; transcript_id "RvY_00134.1"; Scaffold001 rebuild transcript 337934 339396 . - . gene_id "RvY_00135"; transcript_id "RvY_00135.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 337934 338246 . - . gene_id "RvY_00135"; transcript_id "RvY_00135.1"; Scaffold001 rebuild exon 339030 339127 . - . gene_id "RvY_00135"; transcript_id "RvY_00135.1"; Scaffold001 rebuild exon 339322 339396 . - . gene_id "RvY_00135"; transcript_id "RvY_00135.1"; Scaffold001 rebuild transcript 341488 342845 . + . gene_id "RvY_00136"; transcript_id "RvY_00136.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 341488 341578 . + . gene_id "RvY_00136"; transcript_id "RvY_00136.1"; Scaffold001 rebuild exon 341844 342102 . + . gene_id "RvY_00136"; transcript_id "RvY_00136.1"; Scaffold001 rebuild exon 342180 342282 . + . gene_id "RvY_00136"; transcript_id "RvY_00136.1"; Scaffold001 rebuild exon 342513 342845 . + . gene_id "RvY_00136"; transcript_id "RvY_00136.1"; Scaffold001 rebuild transcript 343005 344035 . - . gene_id "RvY_00137"; transcript_id "RvY_00137.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 343005 343361 . - . gene_id "RvY_00137"; transcript_id "RvY_00137.1"; Scaffold001 rebuild exon 343509 343708 . - . gene_id "RvY_00137"; transcript_id "RvY_00137.1"; Scaffold001 rebuild exon 343837 344035 . - . gene_id "RvY_00137"; transcript_id "RvY_00137.1"; Scaffold001 rebuild transcript 342872 343282 . - . gene_id "RvY_00137"; transcript_id "RvY_00137.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 342872 343282 . - . gene_id "RvY_00137"; transcript_id "RvY_00137.2"; Scaffold001 rebuild transcript 343866 344015 . + . gene_id "RvY_00138"; transcript_id "RvY_00138.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 343866 344015 . + . gene_id "RvY_00138"; transcript_id "RvY_00138.1"; Scaffold001 rebuild transcript 344523 348269 . - . gene_id "RvY_00139"; transcript_id "RvY_00139.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold001 rebuild exon 344523 344695 . - . gene_id "RvY_00139"; transcript_id "RvY_00139.1"; Scaffold001 rebuild exon 345450 345754 . - . gene_id "RvY_00139"; transcript_id "RvY_00139.1"; Scaffold001 rebuild exon 345962 346220 . - . gene_id "RvY_00139"; transcript_id "RvY_00139.1"; Scaffold001 rebuild exon 347344 347726 . - . gene_id "RvY_00139"; transcript_id "RvY_00139.1"; Scaffold001 rebuild exon 348097 348269 . - . gene_id "RvY_00139"; transcript_id "RvY_00139.1"; Scaffold001 rebuild transcript 349319 350732 . + . gene_id "RvY_00140"; transcript_id "RvY_00140.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 349319 349618 . + . gene_id "RvY_00140"; transcript_id "RvY_00140.1"; Scaffold001 rebuild exon 349758 349955 . + . gene_id "RvY_00140"; transcript_id "RvY_00140.1"; Scaffold001 rebuild exon 350045 350261 . + . gene_id "RvY_00140"; transcript_id "RvY_00140.1"; Scaffold001 rebuild exon 350566 350732 . + . gene_id "RvY_00140"; transcript_id "RvY_00140.1"; Scaffold001 rebuild transcript 351031 351633 . + . gene_id "RvY_00141"; transcript_id "RvY_00141.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 351031 351633 . + . gene_id "RvY_00141"; transcript_id "RvY_00141.1"; Scaffold001 rebuild transcript 352938 355029 . + . gene_id "RvY_00142"; transcript_id "RvY_00142.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 352938 353111 . + . gene_id "RvY_00142"; transcript_id "RvY_00142.1"; Scaffold001 rebuild exon 353288 353710 . + . gene_id "RvY_00142"; transcript_id "RvY_00142.1"; Scaffold001 rebuild exon 353949 354342 . + . gene_id "RvY_00142"; transcript_id "RvY_00142.1"; Scaffold001 rebuild exon 354569 355029 . + . gene_id "RvY_00142"; transcript_id "RvY_00142.1"; Scaffold001 rebuild transcript 355287 359461 . - . gene_id "RvY_00143"; transcript_id "RvY_00143.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 355287 355509 . - . gene_id "RvY_00143"; transcript_id "RvY_00143.1"; Scaffold001 rebuild exon 355800 356727 . - . gene_id "RvY_00143"; transcript_id "RvY_00143.1"; Scaffold001 rebuild exon 356878 357061 . - . gene_id "RvY_00143"; transcript_id "RvY_00143.1"; Scaffold001 rebuild exon 358134 358805 . - . gene_id "RvY_00143"; transcript_id "RvY_00143.1"; Scaffold001 rebuild exon 359276 359461 . - . gene_id "RvY_00143"; transcript_id "RvY_00143.1"; Scaffold001 rebuild transcript 359676 362564 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 359676 359967 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 360236 360387 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 360467 360718 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 360906 361201 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 361264 361371 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 361443 361525 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 361594 361883 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild exon 362379 362564 . - . gene_id "RvY_00144"; transcript_id "RvY_00144.1"; Scaffold001 rebuild transcript 364657 365101 . - . gene_id "RvY_00145"; transcript_id "RvY_00145.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 364657 364867 . - . gene_id "RvY_00145"; transcript_id "RvY_00145.1"; Scaffold001 rebuild exon 364923 365101 . - . gene_id "RvY_00145"; transcript_id "RvY_00145.1"; Scaffold001 rebuild transcript 365435 366807 . - . gene_id "RvY_00146"; transcript_id "RvY_00146.1"; gene_name "NR2E3"; annotation "putative Photoreceptor-specific nuclear receptor"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor"; CDD "The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; KO "K08546"; similar_genes "NR2E3_MOUSE(e-value:1.2e-32;bit-score:137.0)"; Scaffold001 rebuild exon 365435 365567 . - . gene_id "RvY_00146"; transcript_id "RvY_00146.1"; Scaffold001 rebuild exon 365642 365976 . - . gene_id "RvY_00146"; transcript_id "RvY_00146.1"; Scaffold001 rebuild exon 366323 366558 . - . gene_id "RvY_00146"; transcript_id "RvY_00146.1"; Scaffold001 rebuild exon 366627 366807 . - . gene_id "RvY_00146"; transcript_id "RvY_00146.1"; Scaffold001 rebuild transcript 371299 371980 . + . gene_id "RvY_00147"; transcript_id "RvY_00147.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 371299 371646 . + . gene_id "RvY_00147"; transcript_id "RvY_00147.1"; Scaffold001 rebuild exon 371864 371980 . + . gene_id "RvY_00147"; transcript_id "RvY_00147.1"; Scaffold001 rebuild transcript 371480 372137 . + . gene_id "RvY_00147"; transcript_id "RvY_00147.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 371480 371646 . + . gene_id "RvY_00147"; transcript_id "RvY_00147.2"; Scaffold001 rebuild exon 371864 372137 . + . gene_id "RvY_00147"; transcript_id "RvY_00147.2"; Scaffold001 rebuild transcript 373630 376209 . + . gene_id "RvY_00148"; transcript_id "RvY_00148.1"; annotation "hypothetical protein."; Pfam "[Helitron_like_N] Helitron helicase-like domain at N-terminus"; Scaffold001 rebuild exon 373630 373931 . + . gene_id "RvY_00148"; transcript_id "RvY_00148.1"; Scaffold001 rebuild exon 374011 374238 . + . gene_id "RvY_00148"; transcript_id "RvY_00148.1"; Scaffold001 rebuild exon 375744 376209 . + . gene_id "RvY_00148"; transcript_id "RvY_00148.1"; Scaffold001 rebuild transcript 377555 379581 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 377555 377670 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 377877 377975 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 378072 378134 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 378264 378468 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 378498 378695 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 378827 379098 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 379179 379284 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild exon 379549 379581 . - . gene_id "RvY_00149"; transcript_id "RvY_00149.1"; Scaffold001 rebuild transcript 379615 380533 . + . gene_id "RvY_00150"; transcript_id "RvY_00150.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 379615 379731 . + . gene_id "RvY_00150"; transcript_id "RvY_00150.1"; Scaffold001 rebuild exon 379748 379880 . + . gene_id "RvY_00150"; transcript_id "RvY_00150.1"; Scaffold001 rebuild exon 379957 380025 . + . gene_id "RvY_00150"; transcript_id "RvY_00150.1"; Scaffold001 rebuild exon 380205 380533 . + . gene_id "RvY_00150"; transcript_id "RvY_00150.1"; Scaffold001 rebuild transcript 380702 380923 . + . gene_id "RvY_00151"; transcript_id "RvY_00151.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 380702 380923 . + . gene_id "RvY_00151"; transcript_id "RvY_00151.1"; Scaffold001 rebuild transcript 381158 382506 . + . gene_id "RvY_00152"; transcript_id "RvY_00152.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 381158 381464 . + . gene_id "RvY_00152"; transcript_id "RvY_00152.1"; Scaffold001 rebuild exon 381529 381939 . + . gene_id "RvY_00152"; transcript_id "RvY_00152.1"; Scaffold001 rebuild exon 382412 382506 . + . gene_id "RvY_00152"; transcript_id "RvY_00152.1"; Scaffold001 rebuild transcript 389479 391577 . + . gene_id "RvY_00153"; transcript_id "RvY_00153.1"; annotation "hypothetical protein."; Pfam "[CAP_GLY] CAP-Gly domain"; Scaffold001 rebuild exon 389479 389637 . + . gene_id "RvY_00153"; transcript_id "RvY_00153.1"; Scaffold001 rebuild exon 390517 390835 . + . gene_id "RvY_00153"; transcript_id "RvY_00153.1"; Scaffold001 rebuild exon 390898 391322 . + . gene_id "RvY_00153"; transcript_id "RvY_00153.1"; Scaffold001 rebuild exon 391395 391577 . + . gene_id "RvY_00153"; transcript_id "RvY_00153.1"; Scaffold001 rebuild transcript 393719 397696 . - . gene_id "RvY_00154"; transcript_id "RvY_00154.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 393719 394042 . - . gene_id "RvY_00154"; transcript_id "RvY_00154.1"; Scaffold001 rebuild exon 394110 394394 . - . gene_id "RvY_00154"; transcript_id "RvY_00154.1"; Scaffold001 rebuild exon 396851 397696 . - . gene_id "RvY_00154"; transcript_id "RvY_00154.1"; Scaffold001 rebuild transcript 398686 399784 . - . gene_id "RvY_00155"; transcript_id "RvY_00155.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 398686 399026 . - . gene_id "RvY_00155"; transcript_id "RvY_00155.1"; Scaffold001 rebuild exon 399739 399784 . - . gene_id "RvY_00155"; transcript_id "RvY_00155.1"; Scaffold001 rebuild transcript 401748 402780 . - . gene_id "RvY_00156"; transcript_id "RvY_00156.1"; gene_name "STKc_MAPKKK"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain"; CDD "Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15."; Scaffold001 rebuild exon 401748 402149 . - . gene_id "RvY_00156"; transcript_id "RvY_00156.1"; Scaffold001 rebuild exon 402685 402780 . - . gene_id "RvY_00156"; transcript_id "RvY_00156.1"; Scaffold001 rebuild transcript 403237 404639 . - . gene_id "RvY_00157"; transcript_id "RvY_00157.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 403237 403347 . - . gene_id "RvY_00157"; transcript_id "RvY_00157.1"; Scaffold001 rebuild exon 403613 404064 . - . gene_id "RvY_00157"; transcript_id "RvY_00157.1"; Scaffold001 rebuild exon 404192 404639 . - . gene_id "RvY_00157"; transcript_id "RvY_00157.1"; Scaffold001 rebuild transcript 404987 407925 . + . gene_id "RvY_00158"; transcript_id "RvY_00158.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold001 rebuild exon 404987 405272 . + . gene_id "RvY_00158"; transcript_id "RvY_00158.1"; Scaffold001 rebuild exon 405334 405731 . + . gene_id "RvY_00158"; transcript_id "RvY_00158.1"; Scaffold001 rebuild exon 406387 407925 . + . gene_id "RvY_00158"; transcript_id "RvY_00158.1"; Scaffold001 rebuild transcript 408810 409373 . - . gene_id "RvY_00159"; transcript_id "RvY_00159.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 408810 409373 . - . gene_id "RvY_00159"; transcript_id "RvY_00159.1"; Scaffold001 rebuild transcript 409433 409741 . - . gene_id "RvY_00160"; transcript_id "RvY_00160.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 409433 409741 . - . gene_id "RvY_00160"; transcript_id "RvY_00160.1"; Scaffold001 rebuild transcript 412764 413938 . - . gene_id "RvY_00161"; transcript_id "RvY_00161.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 412764 413066 . - . gene_id "RvY_00161"; transcript_id "RvY_00161.1"; Scaffold001 rebuild exon 413146 413286 . - . gene_id "RvY_00161"; transcript_id "RvY_00161.1"; Scaffold001 rebuild exon 413570 413652 . - . gene_id "RvY_00161"; transcript_id "RvY_00161.1"; Scaffold001 rebuild exon 413719 413938 . - . gene_id "RvY_00161"; transcript_id "RvY_00161.1"; Scaffold001 rebuild transcript 414483 414854 . - . gene_id "RvY_00162"; transcript_id "RvY_00162.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 414483 414854 . - . gene_id "RvY_00162"; transcript_id "RvY_00162.1"; Scaffold001 rebuild transcript 415802 416356 . - . gene_id "RvY_00163"; transcript_id "RvY_00163.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 415802 415872 . - . gene_id "RvY_00163"; transcript_id "RvY_00163.1"; Scaffold001 rebuild exon 415991 416195 . - . gene_id "RvY_00163"; transcript_id "RvY_00163.1"; Scaffold001 rebuild exon 416276 416356 . - . gene_id "RvY_00163"; transcript_id "RvY_00163.1"; Scaffold001 rebuild transcript 416661 416873 . + . gene_id "RvY_00164"; transcript_id "RvY_00164.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 416661 416873 . + . gene_id "RvY_00164"; transcript_id "RvY_00164.1"; Scaffold001 rebuild transcript 417747 418300 . - . gene_id "RvY_00165"; transcript_id "RvY_00165.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 417747 417922 . - . gene_id "RvY_00165"; transcript_id "RvY_00165.1"; Scaffold001 rebuild exon 418034 418162 . - . gene_id "RvY_00165"; transcript_id "RvY_00165.1"; Scaffold001 rebuild exon 418240 418300 . - . gene_id "RvY_00165"; transcript_id "RvY_00165.1"; Scaffold001 rebuild transcript 419426 420113 . - . gene_id "RvY_00166"; transcript_id "RvY_00166.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 419426 419607 . - . gene_id "RvY_00166"; transcript_id "RvY_00166.1"; Scaffold001 rebuild exon 419708 419854 . - . gene_id "RvY_00166"; transcript_id "RvY_00166.1"; Scaffold001 rebuild exon 420053 420113 . - . gene_id "RvY_00166"; transcript_id "RvY_00166.1"; Scaffold001 rebuild transcript 422022 423721 . - . gene_id "RvY_00167"; transcript_id "RvY_00167.1"; annotation "hypothetical protein."; Pfam "[DUF3508]"; Scaffold001 rebuild exon 422022 422199 . - . gene_id "RvY_00167"; transcript_id "RvY_00167.1"; Scaffold001 rebuild exon 422448 422812 . - . gene_id "RvY_00167"; transcript_id "RvY_00167.1"; Scaffold001 rebuild exon 423289 423408 . - . gene_id "RvY_00167"; transcript_id "RvY_00167.1"; Scaffold001 rebuild exon 423491 423721 . - . gene_id "RvY_00167"; transcript_id "RvY_00167.1"; Scaffold001 rebuild transcript 423757 425213 . - . gene_id "RvY_00168"; transcript_id "RvY_00168.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 423757 423923 . - . gene_id "RvY_00168"; transcript_id "RvY_00168.1"; Scaffold001 rebuild exon 424443 424631 . - . gene_id "RvY_00168"; transcript_id "RvY_00168.1"; Scaffold001 rebuild exon 424744 424831 . - . gene_id "RvY_00168"; transcript_id "RvY_00168.1"; Scaffold001 rebuild exon 424918 425013 . - . gene_id "RvY_00168"; transcript_id "RvY_00168.1"; Scaffold001 rebuild exon 425052 425213 . - . gene_id "RvY_00168"; transcript_id "RvY_00168.1"; Scaffold001 rebuild transcript 426525 427741 . - . gene_id "RvY_00169"; transcript_id "RvY_00169.1"; annotation "hypothetical protein."; similar_genes "CF106_CHICK(e-value:8.8e-25;bit-score:111.0)"; Scaffold001 rebuild exon 426525 426742 . - . gene_id "RvY_00169"; transcript_id "RvY_00169.1"; Scaffold001 rebuild exon 427036 427236 . - . gene_id "RvY_00169"; transcript_id "RvY_00169.1"; Scaffold001 rebuild exon 427323 427477 . - . gene_id "RvY_00169"; transcript_id "RvY_00169.1"; Scaffold001 rebuild exon 427590 427741 . - . gene_id "RvY_00169"; transcript_id "RvY_00169.1"; Scaffold001 rebuild transcript 429381 429926 . + . gene_id "RvY_00170"; transcript_id "RvY_00170.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 429381 429515 . + . gene_id "RvY_00170"; transcript_id "RvY_00170.1"; Scaffold001 rebuild exon 429589 429696 . + . gene_id "RvY_00170"; transcript_id "RvY_00170.1"; Scaffold001 rebuild exon 429792 429926 . + . gene_id "RvY_00170"; transcript_id "RvY_00170.1"; Scaffold001 rebuild transcript 431777 433487 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; gene_name "NR_DBD_ROR"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbeta expression is largely restricted to several regions of the brain, the retina, and pineal gland. RORgamma is essential for lymph node organogenesis. Recently, it has been suggested that cholesterol or a cholesterol derivative are the natural ligands of RORalpha. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, retinoid-related orphan receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; similar_genes "HR3_DROME(e-value:1.6e-13;bit-score:74.0)"; Scaffold001 rebuild exon 431777 431898 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild exon 431980 432338 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild exon 432631 432865 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild exon 432951 433061 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild exon 433145 433175 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild exon 433269 433354 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild exon 433457 433487 . - . gene_id "RvY_00171"; transcript_id "RvY_00171.1"; Scaffold001 rebuild transcript 434467 437421 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 434467 434637 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 435003 435204 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 435266 435405 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 435475 435742 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 435941 436254 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 436471 436826 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 437041 437285 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild exon 437351 437421 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.1"; Scaffold001 rebuild transcript 435262 437421 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 435262 435405 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; Scaffold001 rebuild exon 435475 435742 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; Scaffold001 rebuild exon 435941 436254 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; Scaffold001 rebuild exon 436471 436826 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; Scaffold001 rebuild exon 437041 437285 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; Scaffold001 rebuild exon 437351 437421 . - . gene_id "RvY_00172"; transcript_id "RvY_00172.2"; Scaffold001 rebuild transcript 437782 440082 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; annotation "hypothetical protein."; Pfam "[RrnaAD] Ribosomal RNA adenine dimethylase"; Scaffold001 rebuild exon 437782 437952 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; Scaffold001 rebuild exon 438026 438224 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; Scaffold001 rebuild exon 438287 438444 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; Scaffold001 rebuild exon 438574 438953 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; Scaffold001 rebuild exon 439222 439557 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; Scaffold001 rebuild exon 439848 440082 . + . gene_id "RvY_00173"; transcript_id "RvY_00173.1"; Scaffold001 rebuild transcript 440485 442739 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; gene_name "RFA2"; annotation "replication factor A2"; Pfam "[tRNA_anti] OB-fold nucleic acid binding domain|[RPA_C] Replication protein A C terminal"; CDD "RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA damage. RPA2 interacts physically with menin; the gene encoding menin is a tumor suppressor gene disrupted in multiple endocrine neoplasia type I. This subfamily also includes RPA2 from Cryptosporidium parvum (CpRPA2). CpRPA2 is an SSB, which can be phosphorylated by DNA-PK in vitro."; EC "EC3.6.1.-"; KO "K10739"; similar_genes "DED1_CHAGB(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 440485 440545 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 440721 440890 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 440949 441059 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 441463 441576 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 441649 441846 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 441972 442118 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 442187 442293 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild exon 442655 442739 . + . gene_id "RvY_00174"; transcript_id "RvY_00174.1"; Scaffold001 rebuild transcript 447079 447657 . - . gene_id "RvY_00175"; transcript_id "RvY_00175.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 447079 447153 . - . gene_id "RvY_00175"; transcript_id "RvY_00175.1"; Scaffold001 rebuild exon 447538 447657 . - . gene_id "RvY_00175"; transcript_id "RvY_00175.1"; Scaffold001 rebuild transcript 453976 454383 . - . gene_id "RvY_00176"; transcript_id "RvY_00176.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 453976 454383 . - . gene_id "RvY_00176"; transcript_id "RvY_00176.1"; Scaffold001 rebuild transcript 454937 455641 . - . gene_id "RvY_00177"; transcript_id "RvY_00177.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 454937 455440 . - . gene_id "RvY_00177"; transcript_id "RvY_00177.1"; Scaffold001 rebuild exon 455531 455641 . - . gene_id "RvY_00177"; transcript_id "RvY_00177.1"; Scaffold001 rebuild transcript 456452 457526 . + . gene_id "RvY_00178"; transcript_id "RvY_00178.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold001 rebuild exon 456452 456776 . + . gene_id "RvY_00178"; transcript_id "RvY_00178.1"; Scaffold001 rebuild exon 456928 457526 . + . gene_id "RvY_00178"; transcript_id "RvY_00178.1"; Scaffold001 rebuild transcript 458080 460427 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; gene_name "ACTIN"; annotation "Actin-related protein 2"; Pfam "[Actin]"; CDD "Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily"; similar_genes "ARP2_BOVIN(e-value:4.3e-194;bit-score:674.0)"; Scaffold001 rebuild exon 458080 458253 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild exon 458462 458740 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild exon 459053 459202 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild exon 459398 459607 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild exon 459745 459960 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild exon 460146 460256 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild exon 460380 460427 . - . gene_id "RvY_00179"; transcript_id "RvY_00179.1"; Scaffold001 rebuild transcript 462326 462686 . + . gene_id "RvY_00180"; transcript_id "RvY_00180.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 462326 462441 . + . gene_id "RvY_00180"; transcript_id "RvY_00180.1"; Scaffold001 rebuild exon 462470 462686 . + . gene_id "RvY_00180"; transcript_id "RvY_00180.1"; Scaffold001 rebuild transcript 462454 462774 . - . gene_id "RvY_00181"; transcript_id "RvY_00181.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 462454 462774 . - . gene_id "RvY_00181"; transcript_id "RvY_00181.1"; Scaffold001 rebuild transcript 462333 462647 . - . gene_id "RvY_00181"; transcript_id "RvY_00181.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 462333 462647 . - . gene_id "RvY_00181"; transcript_id "RvY_00181.2"; Scaffold001 rebuild transcript 463462 464176 . + . gene_id "RvY_00182"; transcript_id "RvY_00182.1"; annotation "hypothetical protein."; Pfam "[GLTP] Glycolipid transfer protein (GLTP)"; Scaffold001 rebuild exon 463462 463592 . + . gene_id "RvY_00182"; transcript_id "RvY_00182.1"; Scaffold001 rebuild exon 463657 464176 . + . gene_id "RvY_00182"; transcript_id "RvY_00182.1"; Scaffold001 rebuild transcript 464468 466105 . - . gene_id "RvY_00183"; transcript_id "RvY_00183.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 464468 466105 . - . gene_id "RvY_00183"; transcript_id "RvY_00183.1"; Scaffold001 rebuild transcript 467275 468648 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; gene_name "GST_C_Metaxin2"; annotation "hypothetical protein."; Pfam "[Tom37_C] Tom37 C-terminal domain"; CDD "GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury."; Scaffold001 rebuild exon 467275 467506 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild exon 467573 467811 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild exon 467953 468036 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild exon 468100 468212 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild exon 468275 468358 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild exon 468434 468481 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild exon 468573 468648 . - . gene_id "RvY_00184"; transcript_id "RvY_00184.1"; Scaffold001 rebuild transcript 469379 473337 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[RhoGEF]|[PTCB-BRCT] twin BRCT domain"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains."; similar_genes "ECT2_MOUSE(e-value:1.7e-06;bit-score:51.0)"; Scaffold001 rebuild exon 469379 469385 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild exon 469472 470289 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild exon 470531 470748 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild exon 471047 471366 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild exon 471626 472015 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild exon 472161 472444 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild exon 472822 473337 . + . gene_id "RvY_00185"; transcript_id "RvY_00185.1"; Scaffold001 rebuild transcript 474671 475626 . - . gene_id "RvY_00186"; transcript_id "RvY_00186.1"; gene_name "CFL"; annotation "putative Cofilin/actin-depolymerizing factor homolog"; Pfam "[Cofilin_ADF] Cofilin/tropomyosin-type actin-binding protein"; CDD "Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers."; KO "K05765"; similar_genes "CADF_DROME(e-value:2.8e-34;bit-score:143.0)"; Scaffold001 rebuild exon 474671 474836 . - . gene_id "RvY_00186"; transcript_id "RvY_00186.1"; Scaffold001 rebuild exon 475154 475360 . - . gene_id "RvY_00186"; transcript_id "RvY_00186.1"; Scaffold001 rebuild exon 475430 475500 . - . gene_id "RvY_00186"; transcript_id "RvY_00186.1"; Scaffold001 rebuild exon 475624 475626 . - . gene_id "RvY_00186"; transcript_id "RvY_00186.1"; Scaffold001 rebuild transcript 475625 475912 . + . gene_id "RvY_00187"; transcript_id "RvY_00187.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 475625 475912 . + . gene_id "RvY_00187"; transcript_id "RvY_00187.1"; Scaffold001 rebuild transcript 476453 478068 . + . gene_id "RvY_00188"; transcript_id "RvY_00188.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 476453 476861 . + . gene_id "RvY_00188"; transcript_id "RvY_00188.1"; Scaffold001 rebuild exon 477014 477247 . + . gene_id "RvY_00188"; transcript_id "RvY_00188.1"; Scaffold001 rebuild exon 477314 477359 . + . gene_id "RvY_00188"; transcript_id "RvY_00188.1"; Scaffold001 rebuild exon 477444 478068 . + . gene_id "RvY_00188"; transcript_id "RvY_00188.1"; Scaffold001 rebuild transcript 482112 482273 . + . gene_id "RvY_00189"; transcript_id "RvY_00189.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 482112 482273 . + . gene_id "RvY_00189"; transcript_id "RvY_00189.1"; Scaffold001 rebuild transcript 486015 491458 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 486015 486132 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 486201 486388 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 486499 486694 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 487764 488290 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 488479 488724 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 488794 489096 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 489232 489573 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 489647 489867 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 490528 490626 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 490694 490976 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 491048 491173 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild exon 491252 491458 . + . gene_id "RvY_00190"; transcript_id "RvY_00190.1"; Scaffold001 rebuild transcript 493642 495125 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.1"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 493642 493759 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.1"; Scaffold001 rebuild exon 493828 493898 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.1"; Scaffold001 rebuild exon 493982 494252 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.1"; Scaffold001 rebuild exon 495067 495125 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.1"; Scaffold001 rebuild transcript 495098 495595 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.2"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 495098 495595 . + . gene_id "RvY_00191"; transcript_id "RvY_00191.2"; Scaffold001 rebuild transcript 497645 499585 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; annotation "(1)putative Feline leukemia virus subgroup C receptor-related protein 1(2)hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; similar_genes "(1)FLVC1_HUMAN(e-value:5.7e-39;bit-score:159.0)"; Scaffold001 rebuild exon 497645 497721 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; Scaffold001 rebuild exon 497802 498130 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; Scaffold001 rebuild exon 498196 498299 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; Scaffold001 rebuild exon 498381 498574 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; Scaffold001 rebuild exon 498636 498828 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; Scaffold001 rebuild exon 499079 499585 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.1"; Scaffold001 rebuild transcript 497469 498435 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.2"; annotation "(1)putative Feline leukemia virus subgroup C receptor-related protein 1(2)hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; similar_genes "(1)FLVC1_HUMAN(e-value:5.7e-39;bit-score:159.0)"; Scaffold001 rebuild exon 497469 497721 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.2"; Scaffold001 rebuild exon 497802 498130 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.2"; Scaffold001 rebuild exon 498196 498299 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.2"; Scaffold001 rebuild exon 498381 498435 . - . gene_id "RvY_00192"; transcript_id "RvY_00192.2"; Scaffold001 rebuild transcript 500303 502224 . + . gene_id "RvY_00193"; transcript_id "RvY_00193.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; similar_genes "ECT2_HUMAN(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 500303 501441 . + . gene_id "RvY_00193"; transcript_id "RvY_00193.1"; Scaffold001 rebuild exon 501585 502224 . + . gene_id "RvY_00193"; transcript_id "RvY_00193.1"; Scaffold001 rebuild transcript 502451 505164 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; gene_name "WBP11"; annotation "WW domain-binding protein 11"; Pfam "[Wbp11] WW domain binding protein 11"; KO "K12866"; similar_genes "WBP11_RAT(e-value:2.2e-21;bit-score:100.0)"; Scaffold001 rebuild exon 502451 502563 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 502646 502912 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 503333 503443 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 503546 503838 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 504163 504253 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 504351 504419 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 504489 504576 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 504646 504743 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 504897 505022 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild exon 505101 505164 . - . gene_id "RvY_00194"; transcript_id "RvY_00194.1"; Scaffold001 rebuild transcript 507313 512769 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; gene_name "ACE"; annotation "putative Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold001 rebuild exon 507313 507334 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 507419 507483 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 507566 507724 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 507794 508229 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 508329 508554 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 508634 508900 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 508964 509014 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 509082 509112 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 509436 509493 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 509569 509658 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 509743 509887 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 509963 510061 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 510132 510272 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 510395 510567 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 511068 511207 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 511305 511734 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 512001 512216 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 512282 512549 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 512636 512686 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild exon 512748 512769 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.1"; Scaffold001 rebuild transcript 507313 512690 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; gene_name "ACE"; annotation "putative Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold001 rebuild exon 507313 507334 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 507419 507483 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 507566 507724 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 507794 508229 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 508329 508554 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 508634 508900 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 508964 509014 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 509082 509112 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 509436 509493 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 509569 509658 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 509743 509887 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 509963 510061 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 510132 510272 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 510395 510567 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 511068 511207 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 511305 511734 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 512001 512216 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 512282 512549 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild exon 512636 512690 . + . gene_id "RvY_00195"; transcript_id "RvY_00195.2"; Scaffold001 rebuild transcript 513165 514377 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; gene_name "M2_ACE"; annotation "Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold001 rebuild exon 513165 513223 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; Scaffold001 rebuild exon 513286 513354 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; Scaffold001 rebuild exon 513440 513538 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; Scaffold001 rebuild exon 513642 513764 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; Scaffold001 rebuild exon 513821 513987 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; Scaffold001 rebuild exon 514049 514377 . + . gene_id "RvY_00196"; transcript_id "RvY_00196.1"; Scaffold001 rebuild transcript 519354 520814 . + . gene_id "RvY_00197"; transcript_id "RvY_00197.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 519354 519655 . + . gene_id "RvY_00197"; transcript_id "RvY_00197.1"; Scaffold001 rebuild exon 519964 520413 . + . gene_id "RvY_00197"; transcript_id "RvY_00197.1"; Scaffold001 rebuild exon 520481 520814 . + . gene_id "RvY_00197"; transcript_id "RvY_00197.1"; Scaffold001 rebuild transcript 521149 521535 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 521149 521535 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.1"; Scaffold001 rebuild transcript 521112 521535 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 521112 521119 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.2"; Scaffold001 rebuild exon 521175 521535 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.2"; Scaffold001 rebuild transcript 520981 521296 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 520981 521119 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.3"; Scaffold001 rebuild exon 521175 521296 . - . gene_id "RvY_00198"; transcript_id "RvY_00198.3"; Scaffold001 rebuild transcript 521869 522240 . - . gene_id "RvY_00199"; transcript_id "RvY_00199.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 521869 522240 . - . gene_id "RvY_00199"; transcript_id "RvY_00199.1"; Scaffold001 rebuild transcript 522360 522806 . - . gene_id "RvY_00200"; transcript_id "RvY_00200.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 522360 522488 . - . gene_id "RvY_00200"; transcript_id "RvY_00200.1"; Scaffold001 rebuild exon 522666 522806 . - . gene_id "RvY_00200"; transcript_id "RvY_00200.1"; Scaffold001 rebuild transcript 524272 535189 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; gene_name "TRIP12"; annotation "E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19]"; Pfam "[WWE]|[HECT] HECT-domain (ubiquitin-transferase)"; CDD "HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10590"; similar_genes "TRIPC_HUMAN(e-value:5.7e-22;bit-score:102.0)"; Scaffold001 rebuild exon 524272 524318 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 524460 524854 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 524913 525362 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 525715 525912 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 525973 526157 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 526236 526424 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 526674 526961 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 527245 527359 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 527436 527556 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 527646 527799 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 527949 528123 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 528408 528588 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 528649 528767 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 529176 529632 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 530152 530389 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 530540 530945 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 531131 531342 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 531409 531691 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 531985 532405 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 532658 532924 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 533028 533226 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 533428 533589 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 533814 533981 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 534168 534489 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild exon 534993 535189 . + . gene_id "RvY_00201"; transcript_id "RvY_00201.1"; Scaffold001 rebuild transcript 536749 537856 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold001 rebuild exon 536749 536873 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.1"; Scaffold001 rebuild exon 536964 537138 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.1"; Scaffold001 rebuild exon 537239 537307 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.1"; Scaffold001 rebuild exon 537400 537552 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.1"; Scaffold001 rebuild exon 537626 537856 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.1"; Scaffold001 rebuild transcript 537227 537856 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.2"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold001 rebuild exon 537227 537307 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.2"; Scaffold001 rebuild exon 537400 537552 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.2"; Scaffold001 rebuild exon 537626 537856 . - . gene_id "RvY_00202"; transcript_id "RvY_00202.2"; Scaffold001 rebuild transcript 545366 547451 . + . gene_id "RvY_00203"; transcript_id "RvY_00203.1"; gene_name "SOX1S"; annotation "putative Transcription factor SOX-21"; Pfam "[DUF1898]|[SOXp] SOX transcription factor|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; KO "K09267"; similar_genes "SOX21_CHICK(e-value:7.7e-43;bit-score:171.0)"; Scaffold001 rebuild exon 545366 545623 . + . gene_id "RvY_00203"; transcript_id "RvY_00203.1"; Scaffold001 rebuild exon 546930 547451 . + . gene_id "RvY_00203"; transcript_id "RvY_00203.1"; Scaffold001 rebuild transcript 556041 556316 . + . gene_id "RvY_00204"; transcript_id "RvY_00204.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 556041 556316 . + . gene_id "RvY_00204"; transcript_id "RvY_00204.1"; Scaffold001 rebuild transcript 558395 558703 . - . gene_id "RvY_00205"; transcript_id "RvY_00205.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 558395 558703 . - . gene_id "RvY_00205"; transcript_id "RvY_00205.1"; Scaffold001 rebuild transcript 562181 563110 . + . gene_id "RvY_00206"; transcript_id "RvY_00206.1"; gene_name "TWIST"; annotation "twist"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09069"; similar_genes "TWIST_XENLA(e-value:1.5e-22;bit-score:104.0)"; Scaffold001 rebuild exon 562181 562258 . + . gene_id "RvY_00206"; transcript_id "RvY_00206.1"; Scaffold001 rebuild exon 562490 563110 . + . gene_id "RvY_00206"; transcript_id "RvY_00206.1"; Scaffold001 rebuild transcript 562242 563110 . + . gene_id "RvY_00206"; transcript_id "RvY_00206.2"; gene_name "TWIST"; annotation "twist"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09069"; similar_genes "TWIST_XENLA(e-value:1.5e-22;bit-score:104.0)"; Scaffold001 rebuild exon 562242 562258 . + . gene_id "RvY_00206"; transcript_id "RvY_00206.2"; Scaffold001 rebuild exon 562477 563110 . + . gene_id "RvY_00206"; transcript_id "RvY_00206.2"; Scaffold001 rebuild transcript 564425 566498 . + . gene_id "RvY_00207"; transcript_id "RvY_00207.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 564425 564449 . + . gene_id "RvY_00207"; transcript_id "RvY_00207.1"; Scaffold001 rebuild exon 565996 566498 . + . gene_id "RvY_00207"; transcript_id "RvY_00207.1"; Scaffold001 rebuild transcript 567345 569125 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; annotation "Mitochondrial carnitine/acylcarnitine carrier protein"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15109"; similar_genes "MCAT_RAT(e-value:1.7e-55;bit-score:213.0)"; Scaffold001 rebuild exon 567345 567512 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; Scaffold001 rebuild exon 567584 567676 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; Scaffold001 rebuild exon 567878 568005 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; Scaffold001 rebuild exon 568066 568156 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; Scaffold001 rebuild exon 568323 568748 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; Scaffold001 rebuild exon 569063 569125 . + . gene_id "RvY_00208"; transcript_id "RvY_00208.1"; Scaffold001 rebuild transcript 569178 570122 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.1"; gene_name "ARPC4"; annotation "Actin-related protein 2/3 complex subunit 4"; Pfam "[ARPC4] ARP2/3 complex 20 kDa subunit (ARPC4)"; KO "K05755"; similar_genes "(1)ARPC4_HUMAN(e-value:1.2e-77;bit-score:287.0)(2)ARPC4_HUMAN(e-value:2.3e-78;bit-score:289.0)"; Scaffold001 rebuild exon 569178 569423 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.1"; Scaffold001 rebuild exon 569598 569805 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.1"; Scaffold001 rebuild exon 569945 570063 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.1"; Scaffold001 rebuild exon 570120 570122 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.1"; Scaffold001 rebuild transcript 569178 570122 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.2"; gene_name "ARPC4"; annotation "Actin-related protein 2/3 complex subunit 4"; Pfam "[ARPC4] ARP2/3 complex 20 kDa subunit (ARPC4)"; KO "K05755"; similar_genes "(1)ARPC4_HUMAN(e-value:1.2e-77;bit-score:287.0)(2)ARPC4_HUMAN(e-value:2.3e-78;bit-score:289.0)"; Scaffold001 rebuild exon 569178 569183 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.2"; Scaffold001 rebuild exon 569253 569423 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.2"; Scaffold001 rebuild exon 569598 569805 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.2"; Scaffold001 rebuild exon 569945 570063 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.2"; Scaffold001 rebuild exon 570120 570122 . - . gene_id "RvY_00209"; transcript_id "RvY_00209.2"; Scaffold001 rebuild transcript 571541 573642 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold001 rebuild exon 571541 571759 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; Scaffold001 rebuild exon 571842 571964 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; Scaffold001 rebuild exon 572045 572476 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; Scaffold001 rebuild exon 572552 572668 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; Scaffold001 rebuild exon 572874 573310 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; Scaffold001 rebuild exon 573402 573642 . + . gene_id "RvY_00210"; transcript_id "RvY_00210.1"; Scaffold001 rebuild transcript 577327 578971 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.1"; annotation "hypothetical protein."; Pfam "(1)[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1)GTR1_PIG(e-value:1.0e-06;bit-score:51.0)"; Scaffold001 rebuild exon 577327 577645 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.1"; Scaffold001 rebuild exon 577721 577911 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.1"; Scaffold001 rebuild exon 577992 578204 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.1"; Scaffold001 rebuild exon 578279 578542 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.1"; Scaffold001 rebuild exon 578816 578971 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.1"; Scaffold001 rebuild transcript 576700 577418 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.2"; annotation "hypothetical protein."; Pfam "(1)[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1)GTR1_PIG(e-value:1.0e-06;bit-score:51.0)"; Scaffold001 rebuild exon 576700 576738 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.2"; Scaffold001 rebuild exon 576843 577418 . + . gene_id "RvY_00211"; transcript_id "RvY_00211.2"; Scaffold001 rebuild transcript 579424 582995 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "GTR4_MOUSE(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 579424 579453 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild exon 579530 579861 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild exon 581015 581418 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild exon 581478 581668 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild exon 581751 581963 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild exon 582502 582759 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild exon 582840 582995 . + . gene_id "RvY_00212"; transcript_id "RvY_00212.1"; Scaffold001 rebuild transcript 584030 584839 . - . gene_id "RvY_00213"; transcript_id "RvY_00213.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 584030 584839 . - . gene_id "RvY_00213"; transcript_id "RvY_00213.1"; Scaffold001 rebuild transcript 585309 585626 . + . gene_id "RvY_00214"; transcript_id "RvY_00214.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 585309 585626 . + . gene_id "RvY_00214"; transcript_id "RvY_00214.1"; Scaffold001 rebuild transcript 585106 585417 . + . gene_id "RvY_00214"; transcript_id "RvY_00214.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 585106 585417 . + . gene_id "RvY_00214"; transcript_id "RvY_00214.2"; Scaffold001 rebuild transcript 585461 586587 . - . gene_id "RvY_00215"; transcript_id "RvY_00215.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 585461 586032 . - . gene_id "RvY_00215"; transcript_id "RvY_00215.1"; Scaffold001 rebuild exon 586188 586587 . - . gene_id "RvY_00215"; transcript_id "RvY_00215.1"; Scaffold001 rebuild transcript 587935 588518 . - . gene_id "RvY_00216"; transcript_id "RvY_00216.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 587935 588068 . - . gene_id "RvY_00216"; transcript_id "RvY_00216.1"; Scaffold001 rebuild exon 588215 588518 . - . gene_id "RvY_00216"; transcript_id "RvY_00216.1"; Scaffold001 rebuild transcript 590009 590383 . - . gene_id "RvY_00217"; transcript_id "RvY_00217.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 590009 590383 . - . gene_id "RvY_00217"; transcript_id "RvY_00217.1"; Scaffold001 rebuild transcript 590009 590329 . - . gene_id "RvY_00217"; transcript_id "RvY_00217.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 590009 590329 . - . gene_id "RvY_00217"; transcript_id "RvY_00217.2"; Scaffold001 rebuild transcript 593092 593268 . + . gene_id "RvY_00218"; transcript_id "RvY_00218.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 593092 593268 . + . gene_id "RvY_00218"; transcript_id "RvY_00218.1"; Scaffold001 rebuild transcript 593296 594930 . + . gene_id "RvY_00219"; transcript_id "RvY_00219.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 593296 594067 . + . gene_id "RvY_00219"; transcript_id "RvY_00219.1"; Scaffold001 rebuild exon 594169 594362 . + . gene_id "RvY_00219"; transcript_id "RvY_00219.1"; Scaffold001 rebuild exon 594742 594930 . + . gene_id "RvY_00219"; transcript_id "RvY_00219.1"; Scaffold001 rebuild transcript 596860 597072 . - . gene_id "RvY_00220"; transcript_id "RvY_00220.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 596860 597072 . - . gene_id "RvY_00220"; transcript_id "RvY_00220.1"; Scaffold001 rebuild transcript 597610 597798 . - . gene_id "RvY_00221"; transcript_id "RvY_00221.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 597610 597798 . - . gene_id "RvY_00221"; transcript_id "RvY_00221.1"; Scaffold001 rebuild transcript 598035 600614 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; gene_name "PKA"; annotation "cAMP-dependent protein kinase catalytic subunit"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney."; EC "EC2.7.11.11"; KO "K04345"; similar_genes "KAPC_DROME(e-value:5.2e-80;bit-score:295.0)"; Scaffold001 rebuild exon 598035 598163 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 598224 598301 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 598377 598434 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 598505 598703 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 598791 599015 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 599078 599133 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 599213 599417 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild exon 599987 600614 . - . gene_id "RvY_00222"; transcript_id "RvY_00222.1"; Scaffold001 rebuild transcript 601702 603283 . + . gene_id "RvY_00223"; transcript_id "RvY_00223.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 601702 601774 . + . gene_id "RvY_00223"; transcript_id "RvY_00223.1"; Scaffold001 rebuild exon 602608 602931 . + . gene_id "RvY_00223"; transcript_id "RvY_00223.1"; Scaffold001 rebuild exon 603006 603283 . + . gene_id "RvY_00223"; transcript_id "RvY_00223.1"; Scaffold001 rebuild transcript 603932 608228 . - . gene_id "RvY_00224"; transcript_id "RvY_00224.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 603932 603988 . - . gene_id "RvY_00224"; transcript_id "RvY_00224.1"; Scaffold001 rebuild exon 607520 607645 . - . gene_id "RvY_00224"; transcript_id "RvY_00224.1"; Scaffold001 rebuild exon 607737 607991 . - . gene_id "RvY_00224"; transcript_id "RvY_00224.1"; Scaffold001 rebuild exon 608196 608228 . - . gene_id "RvY_00224"; transcript_id "RvY_00224.1"; Scaffold001 rebuild transcript 617682 618718 . + . gene_id "RvY_00225"; transcript_id "RvY_00225.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 617682 617773 . + . gene_id "RvY_00225"; transcript_id "RvY_00225.1"; Scaffold001 rebuild exon 617897 618131 . + . gene_id "RvY_00225"; transcript_id "RvY_00225.1"; Scaffold001 rebuild exon 618599 618718 . + . gene_id "RvY_00225"; transcript_id "RvY_00225.1"; Scaffold001 rebuild transcript 619046 621339 . - . gene_id "RvY_00226"; transcript_id "RvY_00226.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 619046 619224 . - . gene_id "RvY_00226"; transcript_id "RvY_00226.1"; Scaffold001 rebuild exon 621270 621339 . - . gene_id "RvY_00226"; transcript_id "RvY_00226.1"; Scaffold001 rebuild transcript 625774 626971 . + . gene_id "RvY_00227"; transcript_id "RvY_00227.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 625774 625842 . + . gene_id "RvY_00227"; transcript_id "RvY_00227.1"; Scaffold001 rebuild exon 626762 626971 . + . gene_id "RvY_00227"; transcript_id "RvY_00227.1"; Scaffold001 rebuild transcript 629736 631832 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; annotation "hypothetical protein."; Pfam "[DUF974]"; Scaffold001 rebuild exon 629736 629819 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 629900 630056 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 630115 630594 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 630819 630890 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 630957 631098 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 631176 631255 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 631312 631519 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild exon 631703 631832 . - . gene_id "RvY_00228"; transcript_id "RvY_00228.1"; Scaffold001 rebuild transcript 631945 632398 . - . gene_id "RvY_00229"; transcript_id "RvY_00229.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 631945 632097 . - . gene_id "RvY_00229"; transcript_id "RvY_00229.1"; Scaffold001 rebuild exon 632381 632398 . - . gene_id "RvY_00229"; transcript_id "RvY_00229.1"; Scaffold001 rebuild transcript 632775 633982 . + . gene_id "RvY_00230"; transcript_id "RvY_00230.1"; gene_name "K00670"; annotation "N-terminal acetyltransferase complex ARD1 subunit homolog A"; Pfam "[Acetyltransf_10] Acetyltransferase (GNAT) domain|[FR47] FR47-like protein|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "Acetyltransferases [General function prediction only]"; EC "EC2.3.1.88"; KO "K00670"; similar_genes "ARD1A_HUMAN(e-value:4.1e-65;bit-score:245.0)"; Scaffold001 rebuild exon 632775 632795 . + . gene_id "RvY_00230"; transcript_id "RvY_00230.1"; Scaffold001 rebuild exon 632881 632979 . + . gene_id "RvY_00230"; transcript_id "RvY_00230.1"; Scaffold001 rebuild exon 633049 633107 . + . gene_id "RvY_00230"; transcript_id "RvY_00230.1"; Scaffold001 rebuild exon 633206 633409 . + . gene_id "RvY_00230"; transcript_id "RvY_00230.1"; Scaffold001 rebuild exon 633619 633982 . + . gene_id "RvY_00230"; transcript_id "RvY_00230.1"; Scaffold001 rebuild transcript 635348 638342 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; gene_name "AdhP"; annotation "hypothetical protein."; CDD "Zn-dependent alcohol dehydrogenases [General function prediction only]"; Scaffold001 rebuild exon 635348 635482 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 635845 636137 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 636358 636507 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 636711 636871 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 637216 637327 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 637625 637688 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 638003 638169 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild exon 638321 638342 . - . gene_id "RvY_00231"; transcript_id "RvY_00231.1"; Scaffold001 rebuild transcript 641513 651106 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; gene_name "VCL"; annotation "Vinculin"; Pfam "[Vinculin] Vinculin family"; CDD "Vinculin family."; KO "K05700"; similar_genes "VINC_DROME(e-value:8.5e-108;bit-score:387.0)"; Scaffold001 rebuild exon 641513 641569 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 643798 643848 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 643945 644001 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 644324 644641 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 644892 645060 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 645160 645314 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 645750 646161 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 646707 647015 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 647089 647240 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 647509 647884 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 648095 648186 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 648245 648338 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 648608 648775 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 649452 649707 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 649771 649894 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 649959 650049 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild exon 650940 651106 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.1"; Scaffold001 rebuild transcript 641513 651106 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; gene_name "VCL"; annotation "Vinculin"; Pfam "[Vinculin] Vinculin family"; CDD "Vinculin family."; KO "K05700"; similar_genes "VINC_DROME(e-value:8.5e-108;bit-score:387.0)"; Scaffold001 rebuild exon 641513 641569 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 643798 643848 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 643945 644001 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 644324 644641 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 644892 645060 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 645160 645314 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 645750 646161 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 646707 647015 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 647089 647240 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 647509 647884 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 648095 648186 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 648245 648338 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 649452 649707 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 649771 649894 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 649959 650049 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 650283 650321 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild exon 650940 651106 . + . gene_id "RvY_00232"; transcript_id "RvY_00232.2"; Scaffold001 rebuild transcript 653924 663589 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies."; Scaffold001 rebuild exon 653924 653993 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 654286 654336 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 657551 657659 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 658334 658556 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 658701 658883 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 659002 659082 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 659467 659783 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 660042 660153 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 661037 661276 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 661718 662296 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 662838 662998 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 663094 663196 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild exon 663476 663589 . + . gene_id "RvY_00233"; transcript_id "RvY_00233.1"; Scaffold001 rebuild transcript 664115 666311 . - . gene_id "RvY_00234"; transcript_id "RvY_00234.1"; annotation "hypothetical protein."; Pfam "[PAP2_C] PAP2 superfamily C-terminal"; Scaffold001 rebuild exon 664115 664276 . - . gene_id "RvY_00234"; transcript_id "RvY_00234.1"; Scaffold001 rebuild exon 664363 664547 . - . gene_id "RvY_00234"; transcript_id "RvY_00234.1"; Scaffold001 rebuild exon 665082 665238 . - . gene_id "RvY_00234"; transcript_id "RvY_00234.1"; Scaffold001 rebuild exon 665315 665432 . - . gene_id "RvY_00234"; transcript_id "RvY_00234.1"; Scaffold001 rebuild exon 665776 666311 . - . gene_id "RvY_00234"; transcript_id "RvY_00234.1"; Scaffold001 rebuild transcript 669348 671341 . - . gene_id "RvY_00235"; transcript_id "RvY_00235.1"; annotation "hypothetical protein."; Pfam "[PAP2_C] PAP2 superfamily C-terminal"; Scaffold001 rebuild exon 669348 669506 . - . gene_id "RvY_00235"; transcript_id "RvY_00235.1"; Scaffold001 rebuild exon 669784 669968 . - . gene_id "RvY_00235"; transcript_id "RvY_00235.1"; Scaffold001 rebuild exon 670035 670191 . - . gene_id "RvY_00235"; transcript_id "RvY_00235.1"; Scaffold001 rebuild exon 670324 670441 . - . gene_id "RvY_00235"; transcript_id "RvY_00235.1"; Scaffold001 rebuild exon 670755 671341 . - . gene_id "RvY_00235"; transcript_id "RvY_00235.1"; Scaffold001 rebuild transcript 673696 678176 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; gene_name "CDC48"; annotation "Transitional endoplasmic reticulum ATPase"; Pfam "[Arch_ATPase] Archaeal ATPase|[TIP49] TIP49 C-terminus|[AAA_16] AAA ATPase domain|[CDC48_N] Cell division protein 48 (CDC48), N-terminal domain|[AAA_14] AAA domain|[AAA_22] AAA domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[IstB_IS21] IstB-like ATP binding protein|[CDC48_2] Cell division protein 48 (CDC48), domain 2|[AAA_5] AAA domain (dynein-related subfamily)|[AAA_25] AAA domain|[DUF815]|[AAA] ATPase family associated with various cellular activities (AAA)|[Parvo_NS1] Parvovirus non-structural protein NS1|[AAA_18] AAA domain|[AAA_19] Part of AAA domain|[AAA_28] AAA domain|[AAA_17] AAA domain|[Zeta_toxin] Zeta toxin|[AAA_2] AAA domain (Cdc48 subfamily)|(2)[KaiC]|[RNA_helicase] RNA helicase|[AAA_33] AAA domain|(1)[Vps4_C] Vps4 C terminal oligomerisation domain|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus."; KO "K13525"; similar_genes "(1)TERA_DANRE(e-value:0.0e+00;bit-score:1259.0)(2)TERA_DANRE(e-value:0.0e+00;bit-score:1197.0)"; Scaffold001 rebuild exon 673696 673767 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 674164 674514 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 674903 675061 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 675128 675385 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 675654 675881 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 676081 676358 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 676468 676603 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 676677 677045 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 677180 677372 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 677455 677535 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 677705 677877 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 677950 678058 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild exon 678127 678176 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.1"; Scaffold001 rebuild transcript 674885 678176 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; gene_name "CDC48"; annotation "Transitional endoplasmic reticulum ATPase"; Pfam "[Arch_ATPase] Archaeal ATPase|[TIP49] TIP49 C-terminus|[AAA_16] AAA ATPase domain|[CDC48_N] Cell division protein 48 (CDC48), N-terminal domain|[AAA_14] AAA domain|[AAA_22] AAA domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[IstB_IS21] IstB-like ATP binding protein|[CDC48_2] Cell division protein 48 (CDC48), domain 2|[AAA_5] AAA domain (dynein-related subfamily)|[AAA_25] AAA domain|[DUF815]|[AAA] ATPase family associated with various cellular activities (AAA)|[Parvo_NS1] Parvovirus non-structural protein NS1|[AAA_18] AAA domain|[AAA_19] Part of AAA domain|[AAA_28] AAA domain|[AAA_17] AAA domain|[Zeta_toxin] Zeta toxin|[AAA_2] AAA domain (Cdc48 subfamily)|(2)[KaiC]|[RNA_helicase] RNA helicase|[AAA_33] AAA domain|(1)[Vps4_C] Vps4 C terminal oligomerisation domain|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus."; KO "K13525"; similar_genes "(1)TERA_DANRE(e-value:0.0e+00;bit-score:1259.0)(2)TERA_DANRE(e-value:0.0e+00;bit-score:1197.0)"; Scaffold001 rebuild exon 674885 675061 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 675128 675385 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 675654 675881 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 676081 676358 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 676468 676603 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 676677 677045 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 677180 677372 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 677455 677535 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 677705 677877 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 677950 678058 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild exon 678127 678176 . - . gene_id "RvY_00236"; transcript_id "RvY_00236.2"; Scaffold001 rebuild transcript 679355 681665 . - . gene_id "RvY_00237"; transcript_id "RvY_00237.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 679355 679887 . - . gene_id "RvY_00237"; transcript_id "RvY_00237.1"; Scaffold001 rebuild exon 680146 680783 . - . gene_id "RvY_00237"; transcript_id "RvY_00237.1"; Scaffold001 rebuild exon 681031 681665 . - . gene_id "RvY_00237"; transcript_id "RvY_00237.1"; Scaffold001 rebuild transcript 683015 683257 . + . gene_id "RvY_00238"; transcript_id "RvY_00238.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 683015 683257 . + . gene_id "RvY_00238"; transcript_id "RvY_00238.1"; Scaffold001 rebuild transcript 684939 685133 . + . gene_id "RvY_00239"; transcript_id "RvY_00239.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 684939 685133 . + . gene_id "RvY_00239"; transcript_id "RvY_00239.1"; Scaffold001 rebuild transcript 686933 688266 . + . gene_id "RvY_00240"; transcript_id "RvY_00240.1"; gene_name "FN3"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[fn3] Fibronectin type III domain"; CDD "Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases."; Scaffold001 rebuild exon 686933 687173 . + . gene_id "RvY_00240"; transcript_id "RvY_00240.1"; Scaffold001 rebuild exon 687535 687812 . + . gene_id "RvY_00240"; transcript_id "RvY_00240.1"; Scaffold001 rebuild exon 687937 688266 . + . gene_id "RvY_00240"; transcript_id "RvY_00240.1"; Scaffold001 rebuild transcript 689198 689380 . + . gene_id "RvY_00241"; transcript_id "RvY_00241.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 689198 689380 . + . gene_id "RvY_00241"; transcript_id "RvY_00241.1"; Scaffold001 rebuild transcript 690296 691505 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 690296 690415 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; Scaffold001 rebuild exon 690500 690578 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; Scaffold001 rebuild exon 690655 690779 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; Scaffold001 rebuild exon 690853 690979 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; Scaffold001 rebuild exon 691053 691300 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; Scaffold001 rebuild exon 691362 691505 . - . gene_id "RvY_00242"; transcript_id "RvY_00242.1"; Scaffold001 rebuild transcript 693093 693428 . + . gene_id "RvY_00243"; transcript_id "RvY_00243.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain"; Scaffold001 rebuild exon 693093 693428 . + . gene_id "RvY_00243"; transcript_id "RvY_00243.1"; Scaffold001 rebuild transcript 694916 731437 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; gene_name "S_TKc"; annotation "putative Myosin light chain kinase family member 4"; Pfam "[I-set] Immunoglobulin I-set domain|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1-set] Immunoglobulin C1-set domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Tissue_fac] Tissue factor|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Receptor_2B4] Natural killer cell receptor 2B4"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; similar_genes "MYLK4_HUMAN(e-value:3.1e-29;bit-score:126.0)"; Scaffold001 rebuild exon 694916 694929 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 695526 695830 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 696742 697090 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 697719 697920 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 698190 698607 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 698903 699132 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 699210 699610 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 699865 700652 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 701004 702374 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 702621 702912 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 703076 703210 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 703284 703450 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 703532 703626 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 703932 704144 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 704238 704288 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 705084 705118 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 705278 705381 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 705727 706155 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 706541 707322 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 707384 707639 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 707879 708378 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 708753 709176 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 709534 709871 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 710109 710385 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 710595 710906 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 711287 711874 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 712185 712487 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 712749 713345 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 713553 713852 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 714142 714729 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 714953 715204 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 715436 716080 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 716332 717047 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 717255 718011 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 718280 719255 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 719420 719868 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 720063 720526 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 720770 721250 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 721525 722081 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 722289 722925 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 723064 723722 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 723871 724489 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 724546 725063 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 725146 725398 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 725639 726166 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 726485 726986 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 727215 727367 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 727433 727556 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 727918 728023 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 728155 728445 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 728725 729105 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 729596 729993 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 730198 730786 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 731064 731180 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild exon 731253 731437 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.1"; Scaffold001 rebuild transcript 696449 731437 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; gene_name "S_TKc"; annotation "putative Myosin light chain kinase family member 4"; Pfam "[I-set] Immunoglobulin I-set domain|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1-set] Immunoglobulin C1-set domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Tissue_fac] Tissue factor|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Receptor_2B4] Natural killer cell receptor 2B4"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; similar_genes "MYLK4_HUMAN(e-value:3.1e-29;bit-score:126.0)"; Scaffold001 rebuild exon 696449 696461 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 696742 697090 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 697719 697920 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 698190 698607 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 698903 699132 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 699210 699610 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 699865 700652 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 701004 702374 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 702621 702912 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 703076 703210 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 703284 703450 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 703532 703626 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 703932 704144 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 704238 704288 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 705084 705118 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 705278 705381 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 705727 706155 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 706541 707322 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 707384 707639 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 707879 708378 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 708753 709176 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 709534 709871 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 710109 710385 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 710595 710906 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 711287 711874 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 712185 712487 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 712749 713345 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 713553 713852 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 714142 714729 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 714953 715204 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 715436 716080 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 716332 717047 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 717255 718011 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 718280 719255 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 719420 719868 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 720063 720526 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 720770 721250 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 721525 722081 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 722289 722925 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 723064 723722 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 723871 724489 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 724546 725063 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 725146 725398 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 725639 726166 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 726485 726986 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 727215 727367 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 727433 727556 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 727918 728023 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 728155 728445 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 728725 729105 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 729596 729993 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 730198 730786 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 731064 731180 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild exon 731253 731437 . + . gene_id "RvY_00244"; transcript_id "RvY_00244.2"; Scaffold001 rebuild transcript 730389 731069 . - . gene_id "RvY_00245"; transcript_id "RvY_00245.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 730389 731069 . - . gene_id "RvY_00245"; transcript_id "RvY_00245.1"; Scaffold001 rebuild transcript 734828 735025 . - . gene_id "RvY_00246"; transcript_id "RvY_00246.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 734828 735025 . - . gene_id "RvY_00246"; transcript_id "RvY_00246.1"; Scaffold001 rebuild transcript 738945 740424 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.1"; annotation "hypothetical protein."; Pfam "(4)[LRR_8] Leucine rich repeat|(1,2,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(4)[LRR_4] Leucine Rich repeats (2 copies)|(4)[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 738945 739047 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.1"; Scaffold001 rebuild exon 739287 739649 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.1"; Scaffold001 rebuild exon 739734 739973 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.1"; Scaffold001 rebuild exon 740048 740424 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.1"; Scaffold001 rebuild transcript 739017 740424 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.2"; annotation "hypothetical protein."; Pfam "(4)[LRR_8] Leucine rich repeat|(1,2,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(4)[LRR_4] Leucine Rich repeats (2 copies)|(4)[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 739017 739047 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.2"; Scaffold001 rebuild exon 739287 739649 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.2"; Scaffold001 rebuild exon 739734 739973 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.2"; Scaffold001 rebuild exon 740048 740424 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.2"; Scaffold001 rebuild transcript 738339 740424 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.3"; annotation "hypothetical protein."; Pfam "(4)[LRR_8] Leucine rich repeat|(1,2,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(4)[LRR_4] Leucine Rich repeats (2 copies)|(4)[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 738339 738567 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.3"; Scaffold001 rebuild exon 738686 738814 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.3"; Scaffold001 rebuild exon 738904 739047 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.3"; Scaffold001 rebuild exon 740048 740424 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.3"; Scaffold001 rebuild transcript 736987 738555 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; annotation "hypothetical protein."; Pfam "(4)[LRR_8] Leucine rich repeat|(1,2,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(4)[LRR_4] Leucine Rich repeats (2 copies)|(4)[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 736987 736991 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 737058 737129 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 737198 737281 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 737384 737455 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 737557 737625 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 737876 737947 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 738053 738124 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild exon 738192 738555 . + . gene_id "RvY_00247"; transcript_id "RvY_00247.4"; Scaffold001 rebuild transcript 744087 746857 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; gene_name "(2)COG4886"; annotation "hypothetical protein."; Pfam "(2)[LRR_5] Leucine rich repeats (6 copies)|(2)[LRR_8] Leucine rich repeat|(1,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[LRR_7] Leucine rich repeat|(2)[LRR_4] Leucine Rich repeats (2 copies)|(2)[LRR_1] Leucine Rich Repeat"; CDD "(2)Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "(1)RXFP2_CANFA(e-value:2.7e-11;bit-score:67.0)"; Scaffold001 rebuild exon 744087 744106 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild exon 744167 744241 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild exon 744324 744565 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild exon 745233 745477 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild exon 745649 746030 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild exon 746215 746436 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild exon 746508 746857 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.1"; Scaffold001 rebuild transcript 741580 744110 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; gene_name "(2)COG4886"; annotation "hypothetical protein."; Pfam "(2)[LRR_5] Leucine rich repeats (6 copies)|(2)[LRR_8] Leucine rich repeat|(1,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[LRR_7] Leucine rich repeat|(2)[LRR_4] Leucine Rich repeats (2 copies)|(2)[LRR_1] Leucine Rich Repeat"; CDD "(2)Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "(1)RXFP2_CANFA(e-value:2.7e-11;bit-score:67.0)"; Scaffold001 rebuild exon 741580 741688 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 741783 741902 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 741988 742029 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 742234 742344 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 742536 742653 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 742716 742787 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 742863 742934 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 743009 743080 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 743284 743499 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 743561 743629 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 743850 743921 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild exon 744032 744110 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.2"; Scaffold001 rebuild transcript 745577 746801 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.3"; gene_name "(2)COG4886"; annotation "hypothetical protein."; Pfam "(2)[LRR_5] Leucine rich repeats (6 copies)|(2)[LRR_8] Leucine rich repeat|(1,3)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[LRR_7] Leucine rich repeat|(2)[LRR_4] Leucine Rich repeats (2 copies)|(2)[LRR_1] Leucine Rich Repeat"; CDD "(2)Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "(1)RXFP2_CANFA(e-value:2.7e-11;bit-score:67.0)"; Scaffold001 rebuild exon 745577 746030 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.3"; Scaffold001 rebuild exon 746215 746801 . + . gene_id "RvY_00248"; transcript_id "RvY_00248.3"; Scaffold001 framed transcript 749079 753004 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.1"; annotation "hypothetical protein."; Scaffold001 framed exon 749079 749087 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.1"; Scaffold001 framed exon 752690 753004 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.1"; Scaffold001 rebuild transcript 744351 753004 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 744351 744506 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.2"; Scaffold001 rebuild exon 752690 753004 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.2"; Scaffold001 rebuild transcript 752509 753004 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 752509 752610 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.3"; Scaffold001 rebuild exon 752690 753004 . - . gene_id "RvY_00249"; transcript_id "RvY_00249.3"; Scaffold001 rebuild transcript 755714 757878 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; annotation "LIM and senescent cell antigen-like-containing domain protein 1"; Pfam "[LIM]"; similar_genes "(1,2,3,4)LIMS1_HUMAN(e-value:3.4e-113;bit-score:405.0)(5)LIMS1_HUMAN(e-value:1.1e-109;bit-score:393.0)"; Scaffold001 rebuild exon 755714 755765 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 755879 756031 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 756111 756189 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 756267 756405 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 756636 756786 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 756869 756952 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 757043 757114 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 757204 757324 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 757400 757466 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 757533 757578 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild exon 757739 757878 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.1"; Scaffold001 rebuild transcript 755714 758420 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; annotation "LIM and senescent cell antigen-like-containing domain protein 1"; Pfam "[LIM]"; similar_genes "(1,2,3,4)LIMS1_HUMAN(e-value:3.4e-113;bit-score:405.0)(5)LIMS1_HUMAN(e-value:1.1e-109;bit-score:393.0)"; Scaffold001 rebuild exon 755714 755765 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 755879 756031 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 756111 756189 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 756267 756405 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 756636 756786 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 756869 756952 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 757043 757114 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 757204 757324 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 757400 757466 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 757533 757578 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 757739 757807 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild exon 758368 758420 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.2"; Scaffold001 rebuild transcript 755875 757878 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; annotation "LIM and senescent cell antigen-like-containing domain protein 1"; Pfam "[LIM]"; similar_genes "(1,2,3,4)LIMS1_HUMAN(e-value:3.4e-113;bit-score:405.0)(5)LIMS1_HUMAN(e-value:1.1e-109;bit-score:393.0)"; Scaffold001 rebuild exon 755875 756031 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 756111 756189 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 756267 756405 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 756636 756786 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 756869 756952 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 757043 757114 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 757204 757324 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 757400 757466 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 757533 757578 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild exon 757739 757878 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.3"; Scaffold001 rebuild transcript 755875 758420 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; annotation "LIM and senescent cell antigen-like-containing domain protein 1"; Pfam "[LIM]"; similar_genes "(1,2,3,4)LIMS1_HUMAN(e-value:3.4e-113;bit-score:405.0)(5)LIMS1_HUMAN(e-value:1.1e-109;bit-score:393.0)"; Scaffold001 rebuild exon 755875 756031 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 756111 756189 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 756267 756405 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 756636 756786 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 756869 756952 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 757043 757114 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 757204 757324 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 757400 757466 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 757533 757578 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 757739 757807 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild exon 758368 758420 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.4"; Scaffold001 rebuild transcript 756208 758420 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; annotation "LIM and senescent cell antigen-like-containing domain protein 1"; Pfam "[LIM]"; similar_genes "(1,2,3,4)LIMS1_HUMAN(e-value:3.4e-113;bit-score:405.0)(5)LIMS1_HUMAN(e-value:1.1e-109;bit-score:393.0)"; Scaffold001 rebuild exon 756208 756405 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 756636 756786 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 756869 756952 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 757043 757114 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 757204 757324 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 757400 757466 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 757533 757578 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 757739 757807 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild exon 758368 758420 . - . gene_id "RvY_00250"; transcript_id "RvY_00250.5"; Scaffold001 rebuild transcript 759485 759877 . + . gene_id "RvY_00251"; transcript_id "RvY_00251.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 759485 759877 . + . gene_id "RvY_00251"; transcript_id "RvY_00251.3"; Scaffold001 rebuild transcript 759364 759597 . + . gene_id "RvY_00251"; transcript_id "RvY_00251.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 759364 759597 . + . gene_id "RvY_00251"; transcript_id "RvY_00251.4"; Scaffold001 rebuild transcript 761270 765220 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; gene_name "LGR7"; annotation "leucine-rich repeat-containing G protein-coupled receptor 7"; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|(1)[7tm_1] 7 transmembrane receptor (rhodopsin family)|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; KO "K04306"; Scaffold001 rebuild exon 761270 761445 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 761512 761709 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 761768 762259 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 762541 762669 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 762735 762980 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763038 763069 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763130 763201 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763269 763343 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763416 763487 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763553 763624 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763690 763761 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763827 763895 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 763973 764041 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 764118 764189 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 764264 764335 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 764430 764501 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 764561 764681 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 764741 764940 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild exon 765051 765220 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.1"; Scaffold001 rebuild transcript 762533 765220 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; gene_name "LGR7"; annotation "leucine-rich repeat-containing G protein-coupled receptor 7"; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|(1)[7tm_1] 7 transmembrane receptor (rhodopsin family)|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; KO "K04306"; Scaffold001 rebuild exon 762533 762669 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 762735 762980 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763038 763069 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763130 763201 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763269 763343 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763416 763487 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763553 763624 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763690 763761 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763827 763895 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 763973 764041 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 764118 764189 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 764264 764335 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 764430 764501 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 764561 764681 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 764741 764940 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild exon 765051 765220 . - . gene_id "RvY_00252"; transcript_id "RvY_00252.2"; Scaffold001 rebuild transcript 766049 766531 . - . gene_id "RvY_00253"; transcript_id "RvY_00253.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 766049 766105 . - . gene_id "RvY_00253"; transcript_id "RvY_00253.1"; Scaffold001 rebuild exon 766198 766434 . - . gene_id "RvY_00253"; transcript_id "RvY_00253.1"; Scaffold001 rebuild exon 766496 766531 . - . gene_id "RvY_00253"; transcript_id "RvY_00253.1"; Scaffold001 rebuild transcript 777135 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; gene_name "PDEase_I"; annotation "Probable 3',5'-cyclic phosphodiesterase pde-1"; Pfam "[PDEase_I_N] 3'5'-cyclic nucleotide phosphodiesterase N-terminal|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K13755"; similar_genes "PDE1_CAEEL(e-value:1.9e-92;bit-score:336.0)"; Scaffold001 rebuild exon 777135 777222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 781868 782035 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 782173 782329 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 782697 782822 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 782976 783212 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 783431 783613 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 783672 783738 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 783815 783931 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 784099 784239 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 784323 784651 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 784714 785222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild exon 785788 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.1"; Scaffold001 rebuild transcript 777135 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; gene_name "PDEase_I"; annotation "Probable 3',5'-cyclic phosphodiesterase pde-1"; Pfam "[PDEase_I_N] 3'5'-cyclic nucleotide phosphodiesterase N-terminal|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K13755"; similar_genes "PDE1_CAEEL(e-value:1.9e-92;bit-score:336.0)"; Scaffold001 rebuild exon 777135 777222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 781868 782035 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 782173 782329 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 782697 782822 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 782976 783203 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 783431 783613 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 783672 783738 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 783815 783931 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 784099 784239 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 784323 784651 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 784714 785222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild exon 785788 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.2"; Scaffold001 rebuild transcript 775083 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; gene_name "PDEase_I"; annotation "Probable 3',5'-cyclic phosphodiesterase pde-1"; Pfam "[PDEase_I_N] 3'5'-cyclic nucleotide phosphodiesterase N-terminal|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K13755"; similar_genes "PDE1_CAEEL(e-value:1.9e-92;bit-score:336.0)"; Scaffold001 rebuild exon 775083 775143 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 781868 782035 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 782173 782329 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 782697 782822 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 782976 783203 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 783431 783613 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 783672 783738 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 783815 783931 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 784099 784239 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 784323 784651 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 784714 785222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild exon 785788 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.3"; Scaffold001 rebuild transcript 777135 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; gene_name "PDEase_I"; annotation "Probable 3',5'-cyclic phosphodiesterase pde-1"; Pfam "[PDEase_I_N] 3'5'-cyclic nucleotide phosphodiesterase N-terminal|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K13755"; similar_genes "PDE1_CAEEL(e-value:1.9e-92;bit-score:336.0)"; Scaffold001 rebuild exon 777135 777222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 781868 782035 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 782173 782329 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 782697 782822 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 783431 783613 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 783672 783738 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 783815 783931 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 784099 784239 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 784323 784651 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 784714 785222 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild exon 785788 785921 . + . gene_id "RvY_00254"; transcript_id "RvY_00254.4"; Scaffold001 rebuild transcript 780938 781195 . - . gene_id "RvY_00255"; transcript_id "RvY_00255.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 780938 781195 . - . gene_id "RvY_00255"; transcript_id "RvY_00255.1"; Scaffold001 rebuild transcript 781571 781741 . - . gene_id "RvY_00256"; transcript_id "RvY_00256.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 781571 781741 . - . gene_id "RvY_00256"; transcript_id "RvY_00256.1"; Scaffold001 rebuild transcript 787929 789229 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.1"; gene_name "(1)PIGW(3,4,5)COG5062"; annotation "(1)phosphatidylinositol glycan, class W [EC:2.3.-.-](2,3,4,5,6)hypothetical protein."; Pfam "[GWT1]"; CDD "(1,3,4,5)Uncharacterized membrane protein [Function unknown]"; EC "(1)EC2.3.-.-"; KO "(1)K05283"; Scaffold001 rebuild exon 787929 788242 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.1"; Scaffold001 rebuild exon 788377 788545 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.1"; Scaffold001 rebuild exon 788622 788878 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.1"; Scaffold001 rebuild exon 789013 789229 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.1"; Scaffold001 rebuild transcript 788832 789815 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.2"; gene_name "(1)PIGW(3,4,5)COG5062"; annotation "(1)phosphatidylinositol glycan, class W [EC:2.3.-.-](2,3,4,5,6)hypothetical protein."; Pfam "[GWT1]"; CDD "(1,3,4,5)Uncharacterized membrane protein [Function unknown]"; EC "(1)EC2.3.-.-"; KO "(1)K05283"; Scaffold001 rebuild exon 788832 788878 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.2"; Scaffold001 rebuild exon 789013 789142 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.2"; Scaffold001 rebuild exon 789230 789386 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.2"; Scaffold001 rebuild exon 789478 789815 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.2"; Scaffold001 rebuild transcript 787602 788402 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.3"; gene_name "(1)PIGW(3,4,5)COG5062"; annotation "(1)phosphatidylinositol glycan, class W [EC:2.3.-.-](2,3,4,5,6)hypothetical protein."; Pfam "[GWT1]"; CDD "(1,3,4,5)Uncharacterized membrane protein [Function unknown]"; EC "(1)EC2.3.-.-"; KO "(1)K05283"; Scaffold001 rebuild exon 787602 787765 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.3"; Scaffold001 rebuild exon 787856 788196 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.3"; Scaffold001 rebuild exon 788263 788402 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.3"; Scaffold001 rebuild transcript 787602 788402 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.4"; gene_name "(1)PIGW(3,4,5)COG5062"; annotation "(1)phosphatidylinositol glycan, class W [EC:2.3.-.-](2,3,4,5,6)hypothetical protein."; Pfam "[GWT1]"; CDD "(1,3,4,5)Uncharacterized membrane protein [Function unknown]"; EC "(1)EC2.3.-.-"; KO "(1)K05283"; Scaffold001 rebuild exon 787602 788196 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.4"; Scaffold001 rebuild exon 788377 788402 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.4"; Scaffold001 rebuild transcript 787602 788246 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.5"; gene_name "(1)PIGW(3,4,5)COG5062"; annotation "(1)phosphatidylinositol glycan, class W [EC:2.3.-.-](2,3,4,5,6)hypothetical protein."; Pfam "[GWT1]"; CDD "(1,3,4,5)Uncharacterized membrane protein [Function unknown]"; EC "(1)EC2.3.-.-"; KO "(1)K05283"; Scaffold001 rebuild exon 787602 787765 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.5"; Scaffold001 rebuild exon 787856 788246 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.5"; Scaffold001 rebuild transcript 789092 789815 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.6"; gene_name "(1)PIGW(3,4,5)COG5062"; annotation "(1)phosphatidylinositol glycan, class W [EC:2.3.-.-](2,3,4,5,6)hypothetical protein."; Pfam "[GWT1]"; CDD "(1,3,4,5)Uncharacterized membrane protein [Function unknown]"; EC "(1)EC2.3.-.-"; KO "(1)K05283"; Scaffold001 rebuild exon 789092 789142 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.6"; Scaffold001 rebuild exon 789230 789386 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.6"; Scaffold001 rebuild exon 789478 789815 . + . gene_id "RvY_00257"; transcript_id "RvY_00257.6"; Scaffold001 rebuild transcript 788634 790774 . - . gene_id "RvY_00258"; transcript_id "RvY_00258.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 788634 788804 . - . gene_id "RvY_00258"; transcript_id "RvY_00258.1"; Scaffold001 rebuild exon 790655 790774 . - . gene_id "RvY_00258"; transcript_id "RvY_00258.1"; Scaffold001 rebuild transcript 795080 796251 . - . gene_id "RvY_00259"; transcript_id "RvY_00259.1"; gene_name "CG8312"; annotation "hypothetical protein."; CDD "CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; Scaffold001 rebuild exon 795080 795686 . - . gene_id "RvY_00259"; transcript_id "RvY_00259.1"; Scaffold001 rebuild exon 795941 796251 . - . gene_id "RvY_00259"; transcript_id "RvY_00259.1"; Scaffold001 rebuild transcript 799123 799571 . + . gene_id "RvY_00260"; transcript_id "RvY_00260.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 799123 799162 . + . gene_id "RvY_00260"; transcript_id "RvY_00260.1"; Scaffold001 rebuild exon 799471 799571 . + . gene_id "RvY_00260"; transcript_id "RvY_00260.1"; Scaffold001 rebuild transcript 800744 802037 . + . gene_id "RvY_00261"; transcript_id "RvY_00261.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 800744 800858 . + . gene_id "RvY_00261"; transcript_id "RvY_00261.1"; Scaffold001 rebuild exon 800920 801189 . + . gene_id "RvY_00261"; transcript_id "RvY_00261.1"; Scaffold001 rebuild exon 801388 801590 . + . gene_id "RvY_00261"; transcript_id "RvY_00261.1"; Scaffold001 rebuild exon 801744 802037 . + . gene_id "RvY_00261"; transcript_id "RvY_00261.1"; Scaffold001 rebuild transcript 802390 804147 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; gene_name "(1)ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(1)Chitin-binding domain type 2."; Scaffold001 rebuild exon 802390 802456 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 802542 802646 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 802719 802807 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 802909 802955 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 803041 803195 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 803266 803384 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 803460 803607 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 803690 803907 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild exon 803968 804147 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.1"; Scaffold001 rebuild transcript 803117 804147 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.2"; gene_name "(1)ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(1)Chitin-binding domain type 2."; Scaffold001 rebuild exon 803117 803195 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.2"; Scaffold001 rebuild exon 803266 803384 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.2"; Scaffold001 rebuild exon 803460 803607 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.2"; Scaffold001 rebuild exon 803690 803907 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.2"; Scaffold001 rebuild exon 803968 804147 . + . gene_id "RvY_00262"; transcript_id "RvY_00262.2"; Scaffold001 rebuild transcript 805895 806155 . + . gene_id "RvY_00263"; transcript_id "RvY_00263.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 805895 806155 . + . gene_id "RvY_00263"; transcript_id "RvY_00263.1"; Scaffold001 rebuild transcript 806402 808507 . + . gene_id "RvY_00264"; transcript_id "RvY_00264.1"; annotation "hypothetical protein."; Pfam "[Ion_trans] Ion transport protein"; Scaffold001 rebuild exon 806402 806725 . + . gene_id "RvY_00264"; transcript_id "RvY_00264.1"; Scaffold001 rebuild exon 806800 807276 . + . gene_id "RvY_00264"; transcript_id "RvY_00264.1"; Scaffold001 rebuild exon 807355 807542 . + . gene_id "RvY_00264"; transcript_id "RvY_00264.1"; Scaffold001 rebuild exon 807620 807936 . + . gene_id "RvY_00264"; transcript_id "RvY_00264.1"; Scaffold001 rebuild exon 808065 808507 . + . gene_id "RvY_00264"; transcript_id "RvY_00264.1"; Scaffold001 rebuild transcript 808769 809104 . - . gene_id "RvY_00265"; transcript_id "RvY_00265.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 808769 808968 . - . gene_id "RvY_00265"; transcript_id "RvY_00265.1"; Scaffold001 rebuild exon 809089 809104 . - . gene_id "RvY_00265"; transcript_id "RvY_00265.1"; Scaffold001 rebuild transcript 811426 812450 . + . gene_id "RvY_00266"; transcript_id "RvY_00266.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 811426 811737 . + . gene_id "RvY_00266"; transcript_id "RvY_00266.1"; Scaffold001 rebuild exon 812157 812450 . + . gene_id "RvY_00266"; transcript_id "RvY_00266.1"; Scaffold001 rebuild transcript 812947 813198 . + . gene_id "RvY_00267"; transcript_id "RvY_00267.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 812947 813198 . + . gene_id "RvY_00267"; transcript_id "RvY_00267.1"; Scaffold001 rebuild transcript 813469 814583 . - . gene_id "RvY_00268"; transcript_id "RvY_00268.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 813469 814004 . - . gene_id "RvY_00268"; transcript_id "RvY_00268.1"; Scaffold001 rebuild exon 814133 814583 . - . gene_id "RvY_00268"; transcript_id "RvY_00268.1"; Scaffold001 rebuild transcript 816051 816332 . + . gene_id "RvY_00269"; transcript_id "RvY_00269.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 816051 816332 . + . gene_id "RvY_00269"; transcript_id "RvY_00269.1"; Scaffold001 rebuild transcript 816689 817255 . + . gene_id "RvY_00270"; transcript_id "RvY_00270.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 816689 817045 . + . gene_id "RvY_00270"; transcript_id "RvY_00270.1"; Scaffold001 rebuild exon 817184 817255 . + . gene_id "RvY_00270"; transcript_id "RvY_00270.1"; Scaffold001 rebuild transcript 817988 821012 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 817988 818513 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.1"; Scaffold001 rebuild exon 820052 820618 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.1"; Scaffold001 rebuild exon 820816 821012 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.1"; Scaffold001 rebuild transcript 817988 820677 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 817988 818513 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.2"; Scaffold001 rebuild exon 820052 820677 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.2"; Scaffold001 rebuild transcript 817988 820888 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 817988 818513 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.3"; Scaffold001 rebuild exon 820052 820427 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.3"; Scaffold001 rebuild exon 820816 820888 . + . gene_id "RvY_00271"; transcript_id "RvY_00271.3"; Scaffold001 rebuild transcript 824790 824987 . + . gene_id "RvY_00272"; transcript_id "RvY_00272.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 824790 824987 . + . gene_id "RvY_00272"; transcript_id "RvY_00272.1"; Scaffold001 rebuild transcript 827264 827796 . - . gene_id "RvY_00273"; transcript_id "RvY_00273.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 827264 827569 . - . gene_id "RvY_00273"; transcript_id "RvY_00273.1"; Scaffold001 rebuild exon 827650 827796 . - . gene_id "RvY_00273"; transcript_id "RvY_00273.1"; Scaffold001 rebuild transcript 828325 829866 . + . gene_id "RvY_00274"; transcript_id "RvY_00274.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 828325 828562 . + . gene_id "RvY_00274"; transcript_id "RvY_00274.1"; Scaffold001 rebuild exon 829649 829866 . + . gene_id "RvY_00274"; transcript_id "RvY_00274.1"; Scaffold001 rebuild transcript 828173 828556 . + . gene_id "RvY_00274"; transcript_id "RvY_00274.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 828173 828556 . + . gene_id "RvY_00274"; transcript_id "RvY_00274.2"; Scaffold001 rebuild transcript 830168 830713 . + . gene_id "RvY_00275"; transcript_id "RvY_00275.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 830168 830428 . + . gene_id "RvY_00275"; transcript_id "RvY_00275.1"; Scaffold001 rebuild exon 830513 830713 . + . gene_id "RvY_00275"; transcript_id "RvY_00275.1"; Scaffold001 rebuild transcript 831208 832106 . + . gene_id "RvY_00276"; transcript_id "RvY_00276.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 831208 831397 . + . gene_id "RvY_00276"; transcript_id "RvY_00276.1"; Scaffold001 rebuild exon 831469 832106 . + . gene_id "RvY_00276"; transcript_id "RvY_00276.1"; Scaffold001 rebuild transcript 834252 835263 . - . gene_id "RvY_00277"; transcript_id "RvY_00277.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 834252 834682 . - . gene_id "RvY_00277"; transcript_id "RvY_00277.1"; Scaffold001 rebuild exon 834783 835263 . - . gene_id "RvY_00277"; transcript_id "RvY_00277.1"; Scaffold001 rebuild transcript 835470 835828 . + . gene_id "RvY_00278"; transcript_id "RvY_00278.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 835470 835509 . + . gene_id "RvY_00278"; transcript_id "RvY_00278.1"; Scaffold001 rebuild exon 835572 835828 . + . gene_id "RvY_00278"; transcript_id "RvY_00278.1"; Scaffold001 rebuild transcript 835825 836079 . + . gene_id "RvY_00278"; transcript_id "RvY_00278.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 835825 836079 . + . gene_id "RvY_00278"; transcript_id "RvY_00278.2"; Scaffold001 rebuild transcript 836237 837559 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 836237 836726 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.1"; Scaffold001 rebuild exon 836883 837270 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.1"; Scaffold001 rebuild exon 837385 837559 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.1"; Scaffold001 rebuild transcript 836237 837283 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 836237 836726 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.2"; Scaffold001 rebuild exon 836883 837283 . + . gene_id "RvY_00279"; transcript_id "RvY_00279.2"; Scaffold001 rebuild transcript 838393 840562 . + . gene_id "RvY_00280"; transcript_id "RvY_00280.1"; annotation "hypothetical protein."; Pfam "[Fz]|[Frizzled] Frizzled/Smoothened family membrane region"; Scaffold001 rebuild exon 838393 838578 . + . gene_id "RvY_00280"; transcript_id "RvY_00280.1"; Scaffold001 rebuild exon 838868 840562 . + . gene_id "RvY_00280"; transcript_id "RvY_00280.1"; Scaffold001 rebuild transcript 843454 846350 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold001 rebuild exon 843454 843658 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 843876 844103 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 844195 844356 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 844455 844669 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 844875 844998 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 845099 845281 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 845504 845767 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild exon 846142 846350 . + . gene_id "RvY_00281"; transcript_id "RvY_00281.1"; Scaffold001 rebuild transcript 843554 843826 . - . gene_id "RvY_00282"; transcript_id "RvY_00282.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 843554 843826 . - . gene_id "RvY_00282"; transcript_id "RvY_00282.1"; Scaffold001 rebuild transcript 846674 850193 . + . gene_id "RvY_00283"; transcript_id "RvY_00283.1"; annotation "hypothetical protein."; Pfam "[Sec15] Exocyst complex subunit Sec15-like"; Scaffold001 rebuild exon 846674 847126 . + . gene_id "RvY_00283"; transcript_id "RvY_00283.1"; Scaffold001 rebuild exon 847335 847824 . + . gene_id "RvY_00283"; transcript_id "RvY_00283.1"; Scaffold001 rebuild exon 847925 848209 . + . gene_id "RvY_00283"; transcript_id "RvY_00283.1"; Scaffold001 rebuild exon 848759 849409 . + . gene_id "RvY_00283"; transcript_id "RvY_00283.1"; Scaffold001 rebuild exon 849655 850193 . + . gene_id "RvY_00283"; transcript_id "RvY_00283.1"; Scaffold001 rebuild transcript 859173 859738 . - . gene_id "RvY_00284"; transcript_id "RvY_00284.1"; annotation "hypothetical protein."; Pfam "[Sec15] Exocyst complex subunit Sec15-like"; Scaffold001 rebuild exon 859173 859229 . - . gene_id "RvY_00284"; transcript_id "RvY_00284.1"; Scaffold001 rebuild exon 859247 859738 . - . gene_id "RvY_00284"; transcript_id "RvY_00284.1"; Scaffold001 rebuild transcript 861138 868787 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; annotation "hypothetical protein."; Pfam "[BEN]"; Scaffold001 rebuild exon 861138 861271 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 861370 861529 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 861610 861684 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 862448 862593 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 862871 863210 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 866842 867187 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 867260 867317 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild exon 868268 868787 . - . gene_id "RvY_00285"; transcript_id "RvY_00285.1"; Scaffold001 rebuild transcript 870526 876969 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; annotation "hypothetical protein."; similar_genes "CSRN3_HUMAN(e-value:2.0e-24;bit-score:110.0)"; Scaffold001 rebuild exon 870526 870847 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild exon 870936 871105 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild exon 871192 871506 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild exon 873493 873566 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild exon 873691 874053 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild exon 874161 874307 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild exon 876750 876969 . - . gene_id "RvY_00286"; transcript_id "RvY_00286.1"; Scaffold001 rebuild transcript 880836 881585 . + . gene_id "RvY_00287"; transcript_id "RvY_00287.1"; gene_name "COG0327"; annotation "hypothetical protein."; Pfam "[NIF3] NIF3 (NGG1p interacting factor 3)"; CDD "Uncharacterized conserved protein [Function unknown]"; Scaffold001 rebuild exon 880836 881585 . + . gene_id "RvY_00287"; transcript_id "RvY_00287.1"; Scaffold001 rebuild transcript 882469 883097 . + . gene_id "RvY_00288"; transcript_id "RvY_00288.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 882469 882616 . + . gene_id "RvY_00288"; transcript_id "RvY_00288.1"; Scaffold001 rebuild exon 882706 883097 . + . gene_id "RvY_00288"; transcript_id "RvY_00288.1"; Scaffold001 rebuild transcript 886789 886980 . + . gene_id "RvY_00289"; transcript_id "RvY_00289.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 886789 886980 . + . gene_id "RvY_00289"; transcript_id "RvY_00289.1"; Scaffold001 rebuild transcript 888213 890505 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; gene_name "COG5252"; annotation "Zinc finger CCCH domain-containing protein 15"; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; CDD "Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]"; similar_genes "ZC3HF_DANRE(e-value:2.0e-75;bit-score:280.0)"; Scaffold001 rebuild exon 888213 888281 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 888366 888467 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 888525 888636 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 888830 888955 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 889035 889147 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 889222 889310 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 889404 889500 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 889589 889735 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 889817 889912 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild exon 890233 890505 . + . gene_id "RvY_00290"; transcript_id "RvY_00290.1"; Scaffold001 rebuild transcript 891313 892793 . - . gene_id "RvY_00291"; transcript_id "RvY_00291.1"; annotation "hypothetical protein."; Pfam "[CAP_GLY] CAP-Gly domain"; Scaffold001 rebuild exon 891313 891741 . - . gene_id "RvY_00291"; transcript_id "RvY_00291.1"; Scaffold001 rebuild exon 891806 892227 . - . gene_id "RvY_00291"; transcript_id "RvY_00291.1"; Scaffold001 rebuild exon 892286 892793 . - . gene_id "RvY_00291"; transcript_id "RvY_00291.1"; Scaffold001 rebuild transcript 893213 893680 . + . gene_id "RvY_00292"; transcript_id "RvY_00292.1"; gene_name "TFIIA2"; annotation "putative Transcription initiation factor IIA subunit 2"; Pfam "[TFIIA_gamma_C] Transcription initiation factor IIA, gamma subunit|[TFIIA_gamma_N] Transcription initiation factor IIA, gamma subunit, helical domain"; CDD "Transcription initiation factor IIA, gamma subunit [Transcription]"; KO "K03123"; similar_genes "T2AG_DROME(e-value:4.5e-26;bit-score:116.0)"; Scaffold001 rebuild exon 893213 893284 . + . gene_id "RvY_00292"; transcript_id "RvY_00292.1"; Scaffold001 rebuild exon 893348 893452 . + . gene_id "RvY_00292"; transcript_id "RvY_00292.1"; Scaffold001 rebuild exon 893516 893680 . + . gene_id "RvY_00292"; transcript_id "RvY_00292.1"; Scaffold001 rebuild transcript 893735 894088 . + . gene_id "RvY_00293"; transcript_id "RvY_00293.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 893735 894088 . + . gene_id "RvY_00293"; transcript_id "RvY_00293.1"; Scaffold001 rebuild transcript 894393 896797 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; annotation "putative Thyroid receptor-interacting protein 13"; Pfam "[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[AAA_17] AAA domain"; similar_genes "TRP13_MOUSE(e-value:5.0e-40;bit-score:162.0)"; Scaffold001 rebuild exon 894393 894673 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 894746 894962 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 895074 895341 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 895410 895546 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 895656 895849 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 895940 896173 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 896250 896322 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild exon 896684 896797 . + . gene_id "RvY_00294"; transcript_id "RvY_00294.1"; Scaffold001 rebuild transcript 897512 898307 . - . gene_id "RvY_00295"; transcript_id "RvY_00295.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 897512 897727 . - . gene_id "RvY_00295"; transcript_id "RvY_00295.1"; Scaffold001 rebuild exon 898074 898307 . - . gene_id "RvY_00295"; transcript_id "RvY_00295.1"; Scaffold001 rebuild transcript 897185 897552 . - . gene_id "RvY_00295"; transcript_id "RvY_00295.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 897185 897343 . - . gene_id "RvY_00295"; transcript_id "RvY_00295.2"; Scaffold001 rebuild exon 897403 897552 . - . gene_id "RvY_00295"; transcript_id "RvY_00295.2"; Scaffold001 rebuild transcript 899377 900552 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; gene_name "p23_hB-ind1_like"; annotation "hypothetical protein."; Pfam "[CS]"; CDD "p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity."; KO "K15730"; Scaffold001 rebuild exon 899377 899387 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; Scaffold001 rebuild exon 899466 899582 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; Scaffold001 rebuild exon 899652 899715 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; Scaffold001 rebuild exon 899774 899864 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; Scaffold001 rebuild exon 900138 900250 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; Scaffold001 rebuild exon 900403 900552 . + . gene_id "RvY_00296"; transcript_id "RvY_00296.1"; Scaffold001 rebuild transcript 901829 904234 . - . gene_id "RvY_00297"; transcript_id "RvY_00297.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 901829 902163 . - . gene_id "RvY_00297"; transcript_id "RvY_00297.1"; Scaffold001 rebuild exon 902333 902799 . - . gene_id "RvY_00297"; transcript_id "RvY_00297.1"; Scaffold001 rebuild exon 902880 903306 . - . gene_id "RvY_00297"; transcript_id "RvY_00297.1"; Scaffold001 rebuild exon 903393 904003 . - . gene_id "RvY_00297"; transcript_id "RvY_00297.1"; Scaffold001 rebuild exon 904083 904234 . - . gene_id "RvY_00297"; transcript_id "RvY_00297.1"; Scaffold001 rebuild transcript 904916 906539 . + . gene_id "RvY_00298"; transcript_id "RvY_00298.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 904916 905518 . + . gene_id "RvY_00298"; transcript_id "RvY_00298.1"; Scaffold001 rebuild exon 906339 906539 . + . gene_id "RvY_00298"; transcript_id "RvY_00298.1"; Scaffold001 rebuild transcript 906988 908064 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 906988 907226 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; Scaffold001 rebuild exon 907300 907397 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; Scaffold001 rebuild exon 907485 907537 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; Scaffold001 rebuild exon 907657 907690 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; Scaffold001 rebuild exon 907804 907927 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; Scaffold001 rebuild exon 908001 908064 . + . gene_id "RvY_00299"; transcript_id "RvY_00299.1"; Scaffold001 rebuild transcript 907075 907314 . - . gene_id "RvY_00300"; transcript_id "RvY_00300.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 907075 907314 . - . gene_id "RvY_00300"; transcript_id "RvY_00300.1"; Scaffold001 rebuild transcript 910233 911686 . + . gene_id "RvY_00301"; transcript_id "RvY_00301.1"; gene_name "NIP"; annotation "aquaporin NIP"; Pfam "[MIP] Major intrinsic protein"; CDD "Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]"; KO "K09874"; Scaffold001 rebuild exon 910233 910270 . + . gene_id "RvY_00301"; transcript_id "RvY_00301.1"; Scaffold001 rebuild exon 910445 910583 . + . gene_id "RvY_00301"; transcript_id "RvY_00301.1"; Scaffold001 rebuild exon 910655 910916 . + . gene_id "RvY_00301"; transcript_id "RvY_00301.1"; Scaffold001 rebuild exon 911096 911432 . + . gene_id "RvY_00301"; transcript_id "RvY_00301.1"; Scaffold001 rebuild exon 911548 911686 . + . gene_id "RvY_00301"; transcript_id "RvY_00301.1"; Scaffold001 rebuild transcript 912055 912369 . + . gene_id "RvY_00302"; transcript_id "RvY_00302.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 912055 912369 . + . gene_id "RvY_00302"; transcript_id "RvY_00302.1"; Scaffold001 rebuild transcript 912954 914367 . + . gene_id "RvY_00303"; transcript_id "RvY_00303.1"; gene_name "GlpF"; annotation "hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]"; Scaffold001 rebuild exon 912954 913012 . + . gene_id "RvY_00303"; transcript_id "RvY_00303.1"; Scaffold001 rebuild exon 913130 913268 . + . gene_id "RvY_00303"; transcript_id "RvY_00303.1"; Scaffold001 rebuild exon 913340 913601 . + . gene_id "RvY_00303"; transcript_id "RvY_00303.1"; Scaffold001 rebuild exon 913784 914132 . + . gene_id "RvY_00303"; transcript_id "RvY_00303.1"; Scaffold001 rebuild exon 914196 914367 . + . gene_id "RvY_00303"; transcript_id "RvY_00303.1"; Scaffold001 rebuild transcript 914950 917801 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; EC "EC3.1.1.1"; similar_genes "EST31_MOUSE(e-value:4.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 914950 915085 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 915186 915312 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 915405 915525 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 915672 915862 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 915943 916087 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 916264 916649 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 916729 916818 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 917055 917280 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild exon 917598 917801 . - . gene_id "RvY_00304"; transcript_id "RvY_00304.1"; Scaffold001 rebuild transcript 918644 918856 . - . gene_id "RvY_00305"; transcript_id "RvY_00305.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 918644 918856 . - . gene_id "RvY_00305"; transcript_id "RvY_00305.1"; Scaffold001 rebuild transcript 918998 919441 . + . gene_id "RvY_00306"; transcript_id "RvY_00306.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 918998 919204 . + . gene_id "RvY_00306"; transcript_id "RvY_00306.1"; Scaffold001 rebuild exon 919355 919441 . + . gene_id "RvY_00306"; transcript_id "RvY_00306.1"; Scaffold001 rebuild transcript 919942 920634 . - . gene_id "RvY_00307"; transcript_id "RvY_00307.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 919942 920383 . - . gene_id "RvY_00307"; transcript_id "RvY_00307.1"; Scaffold001 rebuild exon 920582 920634 . - . gene_id "RvY_00307"; transcript_id "RvY_00307.1"; Scaffold001 rebuild transcript 920636 920929 . - . gene_id "RvY_00308"; transcript_id "RvY_00308.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 920636 920851 . - . gene_id "RvY_00308"; transcript_id "RvY_00308.1"; Scaffold001 rebuild exon 920924 920929 . - . gene_id "RvY_00308"; transcript_id "RvY_00308.1"; Scaffold001 rebuild transcript 922476 922679 . - . gene_id "RvY_00309"; transcript_id "RvY_00309.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 922476 922679 . - . gene_id "RvY_00309"; transcript_id "RvY_00309.1"; Scaffold001 rebuild transcript 922914 923240 . - . gene_id "RvY_00310"; transcript_id "RvY_00310.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 922914 923240 . - . gene_id "RvY_00310"; transcript_id "RvY_00310.1"; Scaffold001 rebuild transcript 923410 923583 . - . gene_id "RvY_00311"; transcript_id "RvY_00311.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 923410 923583 . - . gene_id "RvY_00311"; transcript_id "RvY_00311.1"; Scaffold001 rebuild transcript 924209 925673 . - . gene_id "RvY_00312"; transcript_id "RvY_00312.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 924209 924374 . - . gene_id "RvY_00312"; transcript_id "RvY_00312.1"; Scaffold001 rebuild exon 924456 925130 . - . gene_id "RvY_00312"; transcript_id "RvY_00312.1"; Scaffold001 rebuild exon 925420 925673 . - . gene_id "RvY_00312"; transcript_id "RvY_00312.1"; Scaffold001 rebuild transcript 926036 927744 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR82_CHICK(e-value:4.7e-15;bit-score:79.0)"; Scaffold001 rebuild exon 926036 926373 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; Scaffold001 rebuild exon 926435 926605 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; Scaffold001 rebuild exon 926774 926999 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; Scaffold001 rebuild exon 927077 927123 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; Scaffold001 rebuild exon 927225 927333 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; Scaffold001 rebuild exon 927454 927744 . + . gene_id "RvY_00313"; transcript_id "RvY_00313.1"; Scaffold001 rebuild transcript 928015 929068 . - . gene_id "RvY_00314"; transcript_id "RvY_00314.1"; gene_name "COG3897"; annotation "hypothetical protein."; Pfam "[Methyltransf_16] Putative methyltransferase"; CDD "Predicted methyltransferase [General function prediction only]"; similar_genes "CQ095_MOUSE(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 928015 928481 . - . gene_id "RvY_00314"; transcript_id "RvY_00314.1"; Scaffold001 rebuild exon 928729 929068 . - . gene_id "RvY_00314"; transcript_id "RvY_00314.1"; Scaffold001 rebuild transcript 929616 930875 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; gene_name "YIP1"; annotation "Protein YIPF5"; Pfam "[Yip1]"; CDD "Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]"; similar_genes "YIPF5_XENTR(e-value:1.0e-63;bit-score:241.0)"; Scaffold001 rebuild exon 929616 929767 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; Scaffold001 rebuild exon 929937 930067 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; Scaffold001 rebuild exon 930151 930185 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; Scaffold001 rebuild exon 930262 930372 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; Scaffold001 rebuild exon 930450 930631 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; Scaffold001 rebuild exon 930713 930875 . + . gene_id "RvY_00315"; transcript_id "RvY_00315.1"; Scaffold001 rebuild transcript 931268 933278 . - . gene_id "RvY_00316"; transcript_id "RvY_00316.1"; gene_name "IGc2"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[LRR_5] Leucine rich repeats (6 copies)|[Ig_2] Immunoglobulin domain|[LRR_8] Leucine rich repeat|[Ig_3] Immunoglobulin domain|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Immunoglobulin C-2 Type."; Scaffold001 rebuild exon 931268 932565 . - . gene_id "RvY_00316"; transcript_id "RvY_00316.1"; Scaffold001 rebuild exon 932789 933278 . - . gene_id "RvY_00316"; transcript_id "RvY_00316.1"; Scaffold001 rebuild transcript 934619 934975 . - . gene_id "RvY_00317"; transcript_id "RvY_00317.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 934619 934975 . - . gene_id "RvY_00317"; transcript_id "RvY_00317.1"; Scaffold001 rebuild transcript 941294 941521 . - . gene_id "RvY_00318"; transcript_id "RvY_00318.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 941294 941521 . - . gene_id "RvY_00318"; transcript_id "RvY_00318.1"; Scaffold001 rebuild transcript 942393 944011 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; annotation "hypothetical protein."; Pfam "[Yip1]"; similar_genes "YIPF6_XENTR(e-value:2.5e-20;bit-score:97.0)"; Scaffold001 rebuild exon 942393 942514 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; Scaffold001 rebuild exon 942891 943048 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; Scaffold001 rebuild exon 943218 943349 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; Scaffold001 rebuild exon 943597 943639 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; Scaffold001 rebuild exon 943703 943781 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; Scaffold001 rebuild exon 943859 944011 . - . gene_id "RvY_00319"; transcript_id "RvY_00319.1"; Scaffold001 rebuild transcript 944694 953319 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; gene_name "PRK12323"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[CLASP_N] CLASP N terminal|[HEAT] HEAT repeat"; CDD "DNA polymerase III subunits gamma and tau; Provisional"; similar_genes "CKAP5_MOUSE(e-value:4.2e-18;bit-score:89.0)"; Scaffold001 rebuild exon 944694 944765 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 944856 945058 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 945308 945431 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 945503 945582 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 945660 945831 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 945946 946087 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 946320 946537 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 946622 946726 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 946849 946938 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 947072 947236 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 947315 947443 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 947658 947930 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 948023 948289 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 948509 948715 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 948870 949217 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 949563 949969 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 950183 950459 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 950534 950721 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 950806 950881 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 951171 951359 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 951463 951603 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 951806 951895 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 952186 952315 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 952592 952875 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild exon 953227 953319 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.1"; Scaffold001 rebuild transcript 944694 951937 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; gene_name "PRK12323"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[CLASP_N] CLASP N terminal|[HEAT] HEAT repeat"; CDD "DNA polymerase III subunits gamma and tau; Provisional"; similar_genes "CKAP5_MOUSE(e-value:4.2e-18;bit-score:89.0)"; Scaffold001 rebuild exon 944694 944765 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 944856 945058 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 945308 945431 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 945503 945582 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 945660 945831 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 945946 946087 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 946320 946537 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 946622 946726 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 946849 946938 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 947072 947236 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 947315 947443 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 947658 947930 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 948023 948289 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 948509 948715 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 948870 949217 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 949563 949969 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 950183 950459 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 950534 950721 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 950806 950881 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 951171 951359 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 951463 951603 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild exon 951806 951937 . + . gene_id "RvY_00320"; transcript_id "RvY_00320.2"; Scaffold001 rebuild transcript 954335 955228 . - . gene_id "RvY_00321"; transcript_id "RvY_00321.1"; gene_name "Lipocalin_2"; annotation "hypothetical protein."; Pfam "[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family|[Lipocalin_2] Lipocalin-like domain"; CDD "Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel."; Scaffold001 rebuild exon 954335 954471 . - . gene_id "RvY_00321"; transcript_id "RvY_00321.1"; Scaffold001 rebuild exon 954551 954643 . - . gene_id "RvY_00321"; transcript_id "RvY_00321.1"; Scaffold001 rebuild exon 954726 954811 . - . gene_id "RvY_00321"; transcript_id "RvY_00321.1"; Scaffold001 rebuild exon 954887 955011 . - . gene_id "RvY_00321"; transcript_id "RvY_00321.1"; Scaffold001 rebuild exon 955085 955228 . - . gene_id "RvY_00321"; transcript_id "RvY_00321.1"; Scaffold001 rebuild transcript 958032 958244 . - . gene_id "RvY_00322"; transcript_id "RvY_00322.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 958032 958244 . - . gene_id "RvY_00322"; transcript_id "RvY_00322.1"; Scaffold001 rebuild transcript 960910 961296 . - . gene_id "RvY_00323"; transcript_id "RvY_00323.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 960910 961296 . - . gene_id "RvY_00323"; transcript_id "RvY_00323.1"; Scaffold001 rebuild transcript 961345 961665 . - . gene_id "RvY_00324"; transcript_id "RvY_00324.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 961345 961665 . - . gene_id "RvY_00324"; transcript_id "RvY_00324.1"; Scaffold001 rebuild transcript 962671 963608 . - . gene_id "RvY_00325"; transcript_id "RvY_00325.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 962671 962727 . - . gene_id "RvY_00325"; transcript_id "RvY_00325.1"; Scaffold001 rebuild exon 963426 963608 . - . gene_id "RvY_00325"; transcript_id "RvY_00325.1"; Scaffold001 rebuild transcript 963949 968997 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; gene_name "Herpes_BLLF1"; annotation "hypothetical protein."; CDD "Herpes virus major outer envelope glycoprotein (BLLF1). This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo."; similar_genes "WASH1_DROME(e-value:2.2e-06;bit-score:50.0)"; Scaffold001 rebuild exon 963949 965633 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; Scaffold001 rebuild exon 965705 965887 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; Scaffold001 rebuild exon 966155 966508 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; Scaffold001 rebuild exon 966579 967319 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; Scaffold001 rebuild exon 967394 968627 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; Scaffold001 rebuild exon 968713 968997 . - . gene_id "RvY_00326"; transcript_id "RvY_00326.1"; Scaffold001 rebuild transcript 969457 970638 . - . gene_id "RvY_00327"; transcript_id "RvY_00327.1"; gene_name "DUF1208"; annotation "hypothetical protein."; Pfam "[FAM92] FAM92 protein"; CDD "Protein of unknown function (DUF1208). This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown."; Scaffold001 rebuild exon 969457 970446 . - . gene_id "RvY_00327"; transcript_id "RvY_00327.1"; Scaffold001 rebuild exon 970522 970638 . - . gene_id "RvY_00327"; transcript_id "RvY_00327.1"; Scaffold001 rebuild transcript 974957 975850 . + . gene_id "RvY_00328"; transcript_id "RvY_00328.1"; gene_name "CETN2"; annotation "putative Centrin-1"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "centrin; Provisional"; KO "K10840"; similar_genes "CETN1_HUMAN(e-value:8.1e-32;bit-score:135.0)"; Scaffold001 rebuild exon 974957 975194 . + . gene_id "RvY_00328"; transcript_id "RvY_00328.1"; Scaffold001 rebuild exon 975270 975337 . + . gene_id "RvY_00328"; transcript_id "RvY_00328.1"; Scaffold001 rebuild exon 975497 975850 . + . gene_id "RvY_00328"; transcript_id "RvY_00328.1"; Scaffold001 rebuild transcript 976794 977966 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 976794 976887 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.1"; Scaffold001 rebuild exon 976986 977155 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.1"; Scaffold001 rebuild exon 977239 977374 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.1"; Scaffold001 rebuild exon 977659 977966 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.1"; Scaffold001 rebuild transcript 977849 978740 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 977849 978296 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.2"; Scaffold001 rebuild exon 978538 978740 . - . gene_id "RvY_00329"; transcript_id "RvY_00329.2"; Scaffold001 rebuild transcript 978976 981167 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; gene_name "(1)JMJD6"; annotation "Bifunctional arginine demethylase and lysyl-hydroxylase PSR"; Pfam "[Cupin_8] Cupin-like domain|[JmjC] JmjC domain, hydroxylase"; EC "EC1.14.11.-"; KO "(1)K11323"; similar_genes "(1)JMJD6_DROME(e-value:2.5e-107;bit-score:386.0)(2)JMJD6_DROME(e-value:2.0e-79;bit-score:293.0)"; Scaffold001 rebuild exon 978976 979046 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 979121 979485 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 979709 979765 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 979837 979886 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 979951 980295 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 980365 980517 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 980804 981012 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild exon 981095 981167 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.1"; Scaffold001 rebuild transcript 979705 981167 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; gene_name "(1)JMJD6"; annotation "Bifunctional arginine demethylase and lysyl-hydroxylase PSR"; Pfam "[Cupin_8] Cupin-like domain|[JmjC] JmjC domain, hydroxylase"; EC "EC1.14.11.-"; KO "(1)K11323"; similar_genes "(1)JMJD6_DROME(e-value:2.5e-107;bit-score:386.0)(2)JMJD6_DROME(e-value:2.0e-79;bit-score:293.0)"; Scaffold001 rebuild exon 979705 979765 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; Scaffold001 rebuild exon 979837 979886 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; Scaffold001 rebuild exon 979951 980295 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; Scaffold001 rebuild exon 980365 980517 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; Scaffold001 rebuild exon 980804 981012 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; Scaffold001 rebuild exon 981095 981167 . - . gene_id "RvY_00330"; transcript_id "RvY_00330.2"; Scaffold001 rebuild transcript 981822 983973 . - . gene_id "RvY_00331"; transcript_id "RvY_00331.1"; gene_name "DARS"; annotation "Aspartyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA_anti] OB-fold nucleic acid binding domain|[tRNA-synt_2] tRNA synthetases class II (D, K and N)"; CDD "aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn)."; EC "EC6.1.1.12"; KO "K01876"; similar_genes "SYDC_RAT(e-value:2.0e-149;bit-score:525.0)"; Scaffold001 rebuild exon 981822 982095 . - . gene_id "RvY_00331"; transcript_id "RvY_00331.1"; Scaffold001 rebuild exon 982298 982584 . - . gene_id "RvY_00331"; transcript_id "RvY_00331.1"; Scaffold001 rebuild exon 982662 983078 . - . gene_id "RvY_00331"; transcript_id "RvY_00331.1"; Scaffold001 rebuild exon 983356 983973 . - . gene_id "RvY_00331"; transcript_id "RvY_00331.1"; Scaffold001 rebuild transcript 986724 987224 . + . gene_id "RvY_00332"; transcript_id "RvY_00332.1"; gene_name "ZNHIT1"; annotation "zinc finger HIT domain-containing protein 1"; KO "K11663"; Scaffold001 rebuild exon 986724 987224 . + . gene_id "RvY_00332"; transcript_id "RvY_00332.1"; Scaffold001 rebuild transcript 987296 989151 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; gene_name "RCL1"; annotation "RNA 3'-terminal phosphate cyclase-like protein"; Pfam "[RTC] RNA 3'-terminal phosphate cyclase|[RTC_insert] RNA 3'-terminal phosphate cyclase (RTC), insert domain"; CDD "18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only."; KO "K11108"; similar_genes "RCL1_DICDI(e-value:4.2e-16;bit-score:83.0)"; Scaffold001 rebuild exon 987296 987556 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild exon 987809 987989 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild exon 988052 988180 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild exon 988244 988446 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild exon 988508 988683 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild exon 988738 988809 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild exon 989028 989151 . - . gene_id "RvY_00333"; transcript_id "RvY_00333.1"; Scaffold001 rebuild transcript 992164 993281 . + . gene_id "RvY_00334"; transcript_id "RvY_00334.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 992164 992563 . + . gene_id "RvY_00334"; transcript_id "RvY_00334.1"; Scaffold001 rebuild exon 992668 993281 . + . gene_id "RvY_00334"; transcript_id "RvY_00334.1"; Scaffold001 rebuild transcript 996971 997177 . - . gene_id "RvY_00335"; transcript_id "RvY_00335.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 996971 997177 . - . gene_id "RvY_00335"; transcript_id "RvY_00335.1"; Scaffold001 rebuild transcript 997209 999365 . - . gene_id "RvY_00336"; transcript_id "RvY_00336.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 997209 997417 . - . gene_id "RvY_00336"; transcript_id "RvY_00336.1"; Scaffold001 rebuild exon 999278 999365 . - . gene_id "RvY_00336"; transcript_id "RvY_00336.1"; Scaffold001 rebuild transcript 1005225 1006447 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1005225 1005457 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; Scaffold001 rebuild exon 1005584 1005719 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; Scaffold001 rebuild exon 1005783 1005816 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; Scaffold001 rebuild exon 1005886 1005922 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; Scaffold001 rebuild exon 1006115 1006210 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; Scaffold001 rebuild exon 1006351 1006447 . + . gene_id "RvY_00337"; transcript_id "RvY_00337.1"; Scaffold001 rebuild transcript 1008090 1009087 . + . gene_id "RvY_00338"; transcript_id "RvY_00338.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1008090 1008207 . + . gene_id "RvY_00338"; transcript_id "RvY_00338.1"; Scaffold001 rebuild exon 1008286 1008383 . + . gene_id "RvY_00338"; transcript_id "RvY_00338.1"; Scaffold001 rebuild exon 1008486 1008693 . + . gene_id "RvY_00338"; transcript_id "RvY_00338.1"; Scaffold001 rebuild exon 1008780 1008900 . + . gene_id "RvY_00338"; transcript_id "RvY_00338.1"; Scaffold001 rebuild exon 1008991 1009087 . + . gene_id "RvY_00338"; transcript_id "RvY_00338.1"; Scaffold001 rebuild transcript 1010858 1012046 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1010858 1010986 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011079 1011146 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011235 1011267 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011349 1011406 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011474 1011551 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011617 1011665 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011741 1011858 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild exon 1011953 1012046 . + . gene_id "RvY_00339"; transcript_id "RvY_00339.1"; Scaffold001 rebuild transcript 1012686 1013749 . + . gene_id "RvY_00340"; transcript_id "RvY_00340.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1012686 1012915 . + . gene_id "RvY_00340"; transcript_id "RvY_00340.1"; Scaffold001 rebuild exon 1012987 1013122 . + . gene_id "RvY_00340"; transcript_id "RvY_00340.1"; Scaffold001 rebuild exon 1013205 1013238 . + . gene_id "RvY_00340"; transcript_id "RvY_00340.1"; Scaffold001 rebuild exon 1013416 1013557 . + . gene_id "RvY_00340"; transcript_id "RvY_00340.1"; Scaffold001 rebuild exon 1013653 1013749 . + . gene_id "RvY_00340"; transcript_id "RvY_00340.1"; Scaffold001 rebuild transcript 1013871 1015118 . - . gene_id "RvY_00341"; transcript_id "RvY_00341.1"; gene_name "WDR61"; annotation "WD repeat-containing protein 61"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K12602"; similar_genes "WDR61_XENTR(e-value:8.2e-17;bit-score:85.0)"; Scaffold001 rebuild exon 1013871 1014133 . - . gene_id "RvY_00341"; transcript_id "RvY_00341.1"; Scaffold001 rebuild exon 1014193 1014436 . - . gene_id "RvY_00341"; transcript_id "RvY_00341.1"; Scaffold001 rebuild exon 1014635 1014951 . - . gene_id "RvY_00341"; transcript_id "RvY_00341.1"; Scaffold001 rebuild exon 1015013 1015118 . - . gene_id "RvY_00341"; transcript_id "RvY_00341.1"; Scaffold001 rebuild transcript 1015512 1017774 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; gene_name "WDSOF1"; annotation "DDB1- and CUL4-associated factor 13"; Pfam "[Sof1] Sof1-like domain|[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11806"; similar_genes "DCA13_HUMAN(e-value:3.5e-98;bit-score:355.0)"; Scaffold001 rebuild exon 1015512 1015581 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1015655 1015854 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1016047 1016229 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1016301 1016456 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1016519 1016596 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1016717 1016867 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1016973 1017069 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1017177 1017312 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild exon 1017523 1017774 . + . gene_id "RvY_00342"; transcript_id "RvY_00342.1"; Scaffold001 rebuild transcript 1020129 1025964 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; gene_name "ae"; annotation "Electroneutral sodium bicarbonate exchanger 1"; Pfam "[HCO3_cotransp] HCO3- transporter family|[Band_3_cyto] Band 3 cytoplasmic domain"; CDD "anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule."; KO "K13861"; similar_genes "S4A8_HUMAN(e-value:3.7e-87;bit-score:319.0)"; Scaffold001 rebuild exon 1020129 1020183 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1020342 1020489 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1020619 1020660 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1020943 1021396 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1021703 1021948 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1022026 1022136 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1022211 1022246 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1022489 1022592 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1022716 1022890 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1022962 1023095 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1023322 1023608 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1023665 1023709 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1024033 1024325 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1024386 1024646 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1024803 1024973 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1025148 1025189 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild exon 1025245 1025964 . + . gene_id "RvY_00343"; transcript_id "RvY_00343.1"; Scaffold001 rebuild transcript 1026324 1028625 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 1026324 1026411 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild exon 1026513 1026810 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild exon 1026885 1026981 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild exon 1027078 1027290 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild exon 1027344 1027615 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild exon 1028133 1028193 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild exon 1028269 1028625 . - . gene_id "RvY_00344"; transcript_id "RvY_00344.1"; Scaffold001 rebuild transcript 1030417 1031198 . - . gene_id "RvY_00345"; transcript_id "RvY_00345.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1030417 1030484 . - . gene_id "RvY_00345"; transcript_id "RvY_00345.1"; Scaffold001 rebuild exon 1030556 1030660 . - . gene_id "RvY_00345"; transcript_id "RvY_00345.1"; Scaffold001 rebuild exon 1030749 1030838 . - . gene_id "RvY_00345"; transcript_id "RvY_00345.1"; Scaffold001 rebuild exon 1030920 1031081 . - . gene_id "RvY_00345"; transcript_id "RvY_00345.1"; Scaffold001 rebuild exon 1031189 1031198 . - . gene_id "RvY_00345"; transcript_id "RvY_00345.1"; Scaffold001 rebuild transcript 1030749 1030886 . + . gene_id "RvY_00346"; transcript_id "RvY_00346.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1030749 1030886 . + . gene_id "RvY_00346"; transcript_id "RvY_00346.1"; Scaffold001 rebuild transcript 1032177 1032461 . - . gene_id "RvY_00347"; transcript_id "RvY_00347.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1032177 1032461 . - . gene_id "RvY_00347"; transcript_id "RvY_00347.1"; Scaffold001 rebuild transcript 1033651 1033839 . + . gene_id "RvY_00348"; transcript_id "RvY_00348.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1033651 1033839 . + . gene_id "RvY_00348"; transcript_id "RvY_00348.1"; Scaffold001 rebuild transcript 1034845 1036009 . + . gene_id "RvY_00349"; transcript_id "RvY_00349.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1034845 1035257 . + . gene_id "RvY_00349"; transcript_id "RvY_00349.1"; Scaffold001 rebuild exon 1035352 1035626 . + . gene_id "RvY_00349"; transcript_id "RvY_00349.1"; Scaffold001 rebuild exon 1035696 1036009 . + . gene_id "RvY_00349"; transcript_id "RvY_00349.1"; Scaffold001 rebuild transcript 1036297 1036701 . - . gene_id "RvY_00350"; transcript_id "RvY_00350.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1036297 1036540 . - . gene_id "RvY_00350"; transcript_id "RvY_00350.1"; Scaffold001 rebuild exon 1036622 1036701 . - . gene_id "RvY_00350"; transcript_id "RvY_00350.1"; Scaffold001 rebuild transcript 1036702 1037067 . - . gene_id "RvY_00351"; transcript_id "RvY_00351.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1036702 1037067 . - . gene_id "RvY_00351"; transcript_id "RvY_00351.1"; Scaffold001 rebuild transcript 1037179 1037737 . - . gene_id "RvY_00352"; transcript_id "RvY_00352.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1037179 1037356 . - . gene_id "RvY_00352"; transcript_id "RvY_00352.1"; Scaffold001 rebuild exon 1037526 1037737 . - . gene_id "RvY_00352"; transcript_id "RvY_00352.1"; Scaffold001 rebuild transcript 1037334 1037648 . - . gene_id "RvY_00352"; transcript_id "RvY_00352.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1037334 1037648 . - . gene_id "RvY_00352"; transcript_id "RvY_00352.2"; Scaffold001 rebuild transcript 1039121 1040589 . - . gene_id "RvY_00353"; transcript_id "RvY_00353.1"; gene_name "SynMuv_product"; annotation "putative UPF0396 protein CG6066"; Pfam "[SynMuv_product] Ras-induced vulval development antagonist"; CDD "Ras-induced vulval development antagonist. This family is from synthetic multi-vulval genes which encode chromatin-associated proteins involved in transcriptional repression. This protein has a role in antagonising Ras-induced vulval development."; similar_genes "U396_DROME(e-value:2.9e-40;bit-score:163.0)"; Scaffold001 rebuild exon 1039121 1039286 . - . gene_id "RvY_00353"; transcript_id "RvY_00353.1"; Scaffold001 rebuild exon 1039373 1039522 . - . gene_id "RvY_00353"; transcript_id "RvY_00353.1"; Scaffold001 rebuild exon 1039693 1040067 . - . gene_id "RvY_00353"; transcript_id "RvY_00353.1"; Scaffold001 rebuild exon 1040157 1040240 . - . gene_id "RvY_00353"; transcript_id "RvY_00353.1"; Scaffold001 rebuild exon 1040327 1040589 . - . gene_id "RvY_00353"; transcript_id "RvY_00353.1"; Scaffold001 rebuild transcript 1041056 1042158 . + . gene_id "RvY_00354"; transcript_id "RvY_00354.1"; gene_name "EBP"; annotation "cholestenol delta-isomerase [EC:5.3.3.5]"; Pfam "[EBP] Emopamil binding protein"; EC "EC5.3.3.5"; KO "K01824"; similar_genes "EBP_HUMAN(e-value:1.2e-07;bit-score:55.0)"; Scaffold001 rebuild exon 1041056 1041292 . + . gene_id "RvY_00354"; transcript_id "RvY_00354.1"; Scaffold001 rebuild exon 1041352 1041421 . + . gene_id "RvY_00354"; transcript_id "RvY_00354.1"; Scaffold001 rebuild exon 1041575 1041611 . + . gene_id "RvY_00354"; transcript_id "RvY_00354.1"; Scaffold001 rebuild exon 1041689 1041738 . + . gene_id "RvY_00354"; transcript_id "RvY_00354.1"; Scaffold001 rebuild exon 1041827 1042158 . + . gene_id "RvY_00354"; transcript_id "RvY_00354.1"; Scaffold001 rebuild transcript 1045166 1045673 . - . gene_id "RvY_00355"; transcript_id "RvY_00355.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1045166 1045307 . - . gene_id "RvY_00355"; transcript_id "RvY_00355.1"; Scaffold001 rebuild exon 1045381 1045673 . - . gene_id "RvY_00355"; transcript_id "RvY_00355.1"; Scaffold001 rebuild transcript 1046790 1048778 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.1"; gene_name "(1)WNT11(2)WNT1"; annotation "(1)wingless-type MMTV integration site family, member 11(2)hypothetical protein."; Pfam "[wnt] wnt family"; CDD "found in Wnt-1."; KO "(1)K01384"; similar_genes "WNT11_XENLA(e-value:1.7e-19;bit-score:94.0)"; Scaffold001 rebuild exon 1046790 1046899 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.1"; Scaffold001 rebuild exon 1047073 1047311 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.1"; Scaffold001 rebuild exon 1047749 1048236 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.1"; Scaffold001 rebuild exon 1048458 1048778 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.1"; Scaffold001 rebuild transcript 1046790 1048257 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.2"; gene_name "(1)WNT11(2)WNT1"; annotation "(1)wingless-type MMTV integration site family, member 11(2)hypothetical protein."; Pfam "[wnt] wnt family"; CDD "found in Wnt-1."; KO "(1)K01384"; similar_genes "WNT11_XENLA(e-value:1.7e-19;bit-score:94.0)"; Scaffold001 rebuild exon 1046790 1046899 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.2"; Scaffold001 rebuild exon 1047073 1047311 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.2"; Scaffold001 rebuild exon 1047749 1048257 . + . gene_id "RvY_00356"; transcript_id "RvY_00356.2"; Scaffold001 rebuild transcript 1051414 1052261 . + . gene_id "RvY_00357"; transcript_id "RvY_00357.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1051414 1051622 . + . gene_id "RvY_00357"; transcript_id "RvY_00357.1"; Scaffold001 rebuild exon 1051925 1052007 . + . gene_id "RvY_00357"; transcript_id "RvY_00357.1"; Scaffold001 rebuild exon 1052077 1052261 . + . gene_id "RvY_00357"; transcript_id "RvY_00357.1"; Scaffold001 rebuild transcript 1055498 1056814 . - . gene_id "RvY_00358"; transcript_id "RvY_00358.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1055498 1056814 . - . gene_id "RvY_00358"; transcript_id "RvY_00358.1"; Scaffold001 rebuild transcript 1057788 1058135 . + . gene_id "RvY_00359"; transcript_id "RvY_00359.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1057788 1058135 . + . gene_id "RvY_00359"; transcript_id "RvY_00359.1"; Scaffold001 rebuild transcript 1059688 1059915 . + . gene_id "RvY_00360"; transcript_id "RvY_00360.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1059688 1059915 . + . gene_id "RvY_00360"; transcript_id "RvY_00360.1"; Scaffold001 rebuild transcript 1063209 1063769 . + . gene_id "RvY_00361"; transcript_id "RvY_00361.1"; gene_name "TBP_TLF"; annotation "hypothetical protein."; Pfam "[TBP] Transcription factor TFIID (or TATA-binding protein, TBP)"; CDD "TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many equivalent positions, suggesting similar structure. However, TLFs contain distinct, conserved amino acids at several positions that distinguish them from TBP."; Scaffold001 rebuild exon 1063209 1063769 . + . gene_id "RvY_00361"; transcript_id "RvY_00361.1"; Scaffold001 rebuild transcript 1066607 1066858 . - . gene_id "RvY_00362"; transcript_id "RvY_00362.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1066607 1066858 . - . gene_id "RvY_00362"; transcript_id "RvY_00362.1"; Scaffold001 rebuild transcript 1070188 1071456 . + . gene_id "RvY_00363"; transcript_id "RvY_00363.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1070188 1070318 . + . gene_id "RvY_00363"; transcript_id "RvY_00363.1"; Scaffold001 rebuild exon 1071300 1071456 . + . gene_id "RvY_00363"; transcript_id "RvY_00363.1"; Scaffold001 rebuild transcript 1070529 1070804 . - . gene_id "RvY_00364"; transcript_id "RvY_00364.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1070529 1070804 . - . gene_id "RvY_00364"; transcript_id "RvY_00364.1"; Scaffold001 rebuild transcript 1071460 1072187 . - . gene_id "RvY_00365"; transcript_id "RvY_00365.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1071460 1071910 . - . gene_id "RvY_00365"; transcript_id "RvY_00365.1"; Scaffold001 rebuild exon 1071949 1072187 . - . gene_id "RvY_00365"; transcript_id "RvY_00365.1"; Scaffold001 rebuild transcript 1075743 1076096 . - . gene_id "RvY_00366"; transcript_id "RvY_00366.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1075743 1076096 . - . gene_id "RvY_00366"; transcript_id "RvY_00366.1"; Scaffold001 rebuild transcript 1077874 1079196 . + . gene_id "RvY_00367"; transcript_id "RvY_00367.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1077874 1077945 . + . gene_id "RvY_00367"; transcript_id "RvY_00367.1"; Scaffold001 rebuild exon 1078867 1079196 . + . gene_id "RvY_00367"; transcript_id "RvY_00367.1"; Scaffold001 rebuild transcript 1080716 1080940 . + . gene_id "RvY_00368"; transcript_id "RvY_00368.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1080716 1080940 . + . gene_id "RvY_00368"; transcript_id "RvY_00368.1"; Scaffold001 rebuild transcript 1081751 1081948 . - . gene_id "RvY_00369"; transcript_id "RvY_00369.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1081751 1081948 . - . gene_id "RvY_00369"; transcript_id "RvY_00369.1"; Scaffold001 rebuild transcript 1083529 1099277 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[fn3] Fibronectin type III domain|[Ank_2] Ankyrin repeats (3 copies)|[MMR_HSR1] 50S ribosome-binding GTPase|[DUF258] Protein of unknown function, DUF258|[Ank] Ankyrin repeat"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold001 rebuild exon 1083529 1085628 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; Scaffold001 rebuild exon 1087646 1088385 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; Scaffold001 rebuild exon 1089926 1090486 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; Scaffold001 rebuild exon 1095811 1096067 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; Scaffold001 rebuild exon 1097110 1097185 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; Scaffold001 rebuild exon 1098323 1099277 . - . gene_id "RvY_00370"; transcript_id "RvY_00370.1"; Scaffold001 rebuild transcript 1088954 1089654 . + . gene_id "RvY_00371"; transcript_id "RvY_00371.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1088954 1089217 . + . gene_id "RvY_00371"; transcript_id "RvY_00371.1"; Scaffold001 rebuild exon 1089601 1089654 . + . gene_id "RvY_00371"; transcript_id "RvY_00371.1"; Scaffold001 rebuild transcript 1100663 1101510 . + . gene_id "RvY_00372"; transcript_id "RvY_00372.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1100663 1100740 . + . gene_id "RvY_00372"; transcript_id "RvY_00372.1"; Scaffold001 rebuild exon 1101151 1101510 . + . gene_id "RvY_00372"; transcript_id "RvY_00372.1"; Scaffold001 rebuild transcript 1102369 1102865 . + . gene_id "RvY_00373"; transcript_id "RvY_00373.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1102369 1102685 . + . gene_id "RvY_00373"; transcript_id "RvY_00373.1"; Scaffold001 rebuild exon 1102760 1102865 . + . gene_id "RvY_00373"; transcript_id "RvY_00373.1"; Scaffold001 rebuild transcript 1103185 1106873 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; gene_name "SAS2"; annotation "hypothetical protein."; Pfam "[MOZ_SAS] MOZ/SAS family"; CDD "Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]"; EC "EC2.3.1.48"; similar_genes "KAT5_PONAB(e-value:6.1e-13;bit-score:72.0)"; Scaffold001 rebuild exon 1103185 1103471 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1103739 1103894 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1103984 1104080 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1104181 1104468 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1104640 1104712 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1104986 1105281 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1105521 1105717 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1105771 1105958 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1106042 1106149 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1106222 1106290 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1106390 1106738 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild exon 1106831 1106873 . - . gene_id "RvY_00374"; transcript_id "RvY_00374.1"; Scaffold001 rebuild transcript 1108059 1110009 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1108059 1108225 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; Scaffold001 rebuild exon 1108304 1108386 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; Scaffold001 rebuild exon 1108478 1108627 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; Scaffold001 rebuild exon 1108691 1108877 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; Scaffold001 rebuild exon 1109174 1109535 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; Scaffold001 rebuild exon 1109612 1110009 . - . gene_id "RvY_00375"; transcript_id "RvY_00375.1"; Scaffold001 rebuild transcript 1110299 1111718 . - . gene_id "RvY_00376"; transcript_id "RvY_00376.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 1110299 1110556 . - . gene_id "RvY_00376"; transcript_id "RvY_00376.1"; Scaffold001 rebuild exon 1110798 1111718 . - . gene_id "RvY_00376"; transcript_id "RvY_00376.1"; Scaffold001 rebuild transcript 1112667 1116026 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; gene_name "ACADVL"; annotation "Very long-chain specific acyl-CoA dehydrogenase, mitochondrial"; Pfam "[Acyl-CoA_dh_N] Acyl-CoA dehydrogenase, N-terminal domain|[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_2] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "Very long chain acyl-CoA dehydrogenase (VLCAD). VLCAD acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD, which is a homodimer."; EC "EC1.3.99.-"; KO "K09479"; similar_genes "ACADV_MACFA(e-value:7.8e-79;bit-score:291.0)"; Scaffold001 rebuild exon 1112667 1112804 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1112865 1113013 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1113221 1113621 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1113920 1114206 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1114442 1114636 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1114722 1115053 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1115149 1115350 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1115419 1115555 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1115762 1115877 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild exon 1115947 1116026 . - . gene_id "RvY_00377"; transcript_id "RvY_00377.1"; Scaffold001 rebuild transcript 1116432 1117264 . + . gene_id "RvY_00378"; transcript_id "RvY_00378.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1116432 1116666 . + . gene_id "RvY_00378"; transcript_id "RvY_00378.1"; Scaffold001 rebuild exon 1116861 1117264 . + . gene_id "RvY_00378"; transcript_id "RvY_00378.1"; Scaffold001 rebuild transcript 1117494 1117880 . - . gene_id "RvY_00379"; transcript_id "RvY_00379.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1117494 1117880 . - . gene_id "RvY_00379"; transcript_id "RvY_00379.1"; Scaffold001 rebuild transcript 1118110 1120740 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_4] Tetratricopeptide repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat"; Scaffold001 rebuild exon 1118110 1118438 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild exon 1118614 1118860 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild exon 1119220 1119616 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild exon 1119793 1120016 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild exon 1120097 1120210 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild exon 1120288 1120384 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild exon 1120472 1120740 . - . gene_id "RvY_00380"; transcript_id "RvY_00380.1"; Scaffold001 rebuild transcript 1121013 1121420 . + . gene_id "RvY_00381"; transcript_id "RvY_00381.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1121013 1121420 . + . gene_id "RvY_00381"; transcript_id "RvY_00381.1"; Scaffold001 rebuild transcript 1122280 1122603 . - . gene_id "RvY_00382"; transcript_id "RvY_00382.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1122280 1122603 . - . gene_id "RvY_00382"; transcript_id "RvY_00382.1"; Scaffold001 rebuild transcript 1122661 1122907 . - . gene_id "RvY_00383"; transcript_id "RvY_00383.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1122661 1122719 . - . gene_id "RvY_00383"; transcript_id "RvY_00383.1"; Scaffold001 rebuild exon 1122799 1122907 . - . gene_id "RvY_00383"; transcript_id "RvY_00383.1"; Scaffold001 rebuild transcript 1123744 1124367 . + . gene_id "RvY_00384"; transcript_id "RvY_00384.1"; gene_name "SDHC"; annotation "succinate dehydrogenase (ubiquinone) cytochrome b subunit [EC:1.3.5.1]"; Pfam "[Sdh_cyt] Succinate dehydrogenase/Fumarate reductase transmembrane subunit"; CDD "Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein Scaffold001 rebuild exon 1123744 1124367 . + . gene_id "RvY_00384"; transcript_id "RvY_00384.1"; Scaffold001 rebuild transcript 1124870 1126930 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; gene_name "RAD23"; annotation "UV excision repair protein RAD23"; Pfam "[DUF2407] DUF2407 ubiquitin-like domain|[ubiquitin] Ubiquitin family|[XPC-binding]|[UBA] UBA/TS-N domain|[Rad60-SLD_2] Ubiquitin-2 like Rad60 SUMO-like"; CDD "UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10839"; similar_genes "RD23A_BOVIN(e-value:4.5e-09;bit-score:59.0)"; Scaffold001 rebuild exon 1124870 1124935 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild exon 1125008 1125086 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild exon 1125311 1125717 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild exon 1125954 1126068 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild exon 1126165 1126289 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild exon 1126350 1126613 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild exon 1126823 1126930 . + . gene_id "RvY_00385"; transcript_id "RvY_00385.1"; Scaffold001 rebuild transcript 1129002 1134260 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; annotation "hypothetical protein."; Pfam "[Ephrin]|[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 1129002 1129171 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; Scaffold001 rebuild exon 1130080 1130230 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; Scaffold001 rebuild exon 1130451 1130688 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; Scaffold001 rebuild exon 1130935 1131496 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; Scaffold001 rebuild exon 1133364 1133993 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; Scaffold001 rebuild exon 1134005 1134260 . + . gene_id "RvY_00386"; transcript_id "RvY_00386.1"; Scaffold001 rebuild transcript 1136433 1138463 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1136433 1136537 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; Scaffold001 rebuild exon 1136738 1137042 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; Scaffold001 rebuild exon 1137319 1137613 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; Scaffold001 rebuild exon 1137739 1137888 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; Scaffold001 rebuild exon 1137996 1138177 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; Scaffold001 rebuild exon 1138250 1138463 . - . gene_id "RvY_00387"; transcript_id "RvY_00387.1"; Scaffold001 rebuild transcript 1139567 1139837 . - . gene_id "RvY_00388"; transcript_id "RvY_00388.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1139567 1139690 . - . gene_id "RvY_00388"; transcript_id "RvY_00388.1"; Scaffold001 rebuild exon 1139758 1139837 . - . gene_id "RvY_00388"; transcript_id "RvY_00388.1"; Scaffold001 rebuild transcript 1141603 1141776 . + . gene_id "RvY_00389"; transcript_id "RvY_00389.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1141603 1141776 . + . gene_id "RvY_00389"; transcript_id "RvY_00389.1"; Scaffold001 rebuild transcript 1142484 1142876 . + . gene_id "RvY_00390"; transcript_id "RvY_00390.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1142484 1142876 . + . gene_id "RvY_00390"; transcript_id "RvY_00390.1"; Scaffold001 rebuild transcript 1143354 1149694 . + . gene_id "RvY_00391"; transcript_id "RvY_00391.1"; annotation "hypothetical protein."; Pfam "[Ephrin]"; Scaffold001 rebuild exon 1143354 1143532 . + . gene_id "RvY_00391"; transcript_id "RvY_00391.1"; Scaffold001 rebuild exon 1146487 1146637 . + . gene_id "RvY_00391"; transcript_id "RvY_00391.1"; Scaffold001 rebuild exon 1146990 1147227 . + . gene_id "RvY_00391"; transcript_id "RvY_00391.1"; Scaffold001 rebuild exon 1148815 1148931 . + . gene_id "RvY_00391"; transcript_id "RvY_00391.1"; Scaffold001 rebuild exon 1149081 1149694 . + . gene_id "RvY_00391"; transcript_id "RvY_00391.1"; Scaffold001 rebuild transcript 1150624 1151668 . - . gene_id "RvY_00392"; transcript_id "RvY_00392.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold001 rebuild exon 1150624 1150892 . - . gene_id "RvY_00392"; transcript_id "RvY_00392.1"; Scaffold001 rebuild exon 1151063 1151374 . - . gene_id "RvY_00392"; transcript_id "RvY_00392.1"; Scaffold001 rebuild exon 1151656 1151668 . - . gene_id "RvY_00392"; transcript_id "RvY_00392.1"; Scaffold001 rebuild transcript 1152122 1152656 . - . gene_id "RvY_00393"; transcript_id "RvY_00393.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1152122 1152381 . - . gene_id "RvY_00393"; transcript_id "RvY_00393.1"; Scaffold001 rebuild exon 1152581 1152656 . - . gene_id "RvY_00393"; transcript_id "RvY_00393.1"; Scaffold001 rebuild transcript 1152548 1152880 . + . gene_id "RvY_00394"; transcript_id "RvY_00394.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1152548 1152880 . + . gene_id "RvY_00394"; transcript_id "RvY_00394.1"; Scaffold001 rebuild transcript 1153513 1154751 . - . gene_id "RvY_00395"; transcript_id "RvY_00395.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1153513 1153529 . - . gene_id "RvY_00395"; transcript_id "RvY_00395.1"; Scaffold001 rebuild exon 1153699 1154193 . - . gene_id "RvY_00395"; transcript_id "RvY_00395.1"; Scaffold001 rebuild exon 1154463 1154751 . - . gene_id "RvY_00395"; transcript_id "RvY_00395.1"; Scaffold001 rebuild transcript 1155406 1156946 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1155406 1155462 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; Scaffold001 rebuild exon 1155537 1155722 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; Scaffold001 rebuild exon 1155986 1156086 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; Scaffold001 rebuild exon 1156165 1156297 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; Scaffold001 rebuild exon 1156378 1156527 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; Scaffold001 rebuild exon 1156710 1156946 . - . gene_id "RvY_00396"; transcript_id "RvY_00396.1"; Scaffold001 rebuild transcript 1157900 1158082 . - . gene_id "RvY_00397"; transcript_id "RvY_00397.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1157900 1158082 . - . gene_id "RvY_00397"; transcript_id "RvY_00397.1"; Scaffold001 rebuild transcript 1158371 1159630 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 1158371 1158641 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.1"; Scaffold001 rebuild exon 1158708 1158824 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.1"; Scaffold001 rebuild exon 1158902 1159306 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.1"; Scaffold001 rebuild exon 1159368 1159630 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.1"; Scaffold001 rebuild transcript 1158671 1159726 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.2"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 1158671 1158824 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.2"; Scaffold001 rebuild exon 1158902 1159306 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.2"; Scaffold001 rebuild exon 1159368 1159726 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.2"; Scaffold001 rebuild transcript 1158671 1159630 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.3"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 1158671 1158824 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.3"; Scaffold001 rebuild exon 1158902 1159306 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.3"; Scaffold001 rebuild exon 1159368 1159630 . - . gene_id "RvY_00398"; transcript_id "RvY_00398.3"; Scaffold001 rebuild transcript 1160383 1160928 . - . gene_id "RvY_00399"; transcript_id "RvY_00399.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1160383 1160928 . - . gene_id "RvY_00399"; transcript_id "RvY_00399.1"; Scaffold001 rebuild transcript 1161086 1161860 . - . gene_id "RvY_00400"; transcript_id "RvY_00400.1"; gene_name "Cdc42"; annotation "putative Cell division control protein 42 homolog"; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; similar_genes "CDC42_MOUSE(e-value:1.2e-49;bit-score:194.0)"; Scaffold001 rebuild exon 1161086 1161322 . - . gene_id "RvY_00400"; transcript_id "RvY_00400.1"; Scaffold001 rebuild exon 1161464 1161646 . - . gene_id "RvY_00400"; transcript_id "RvY_00400.1"; Scaffold001 rebuild exon 1161735 1161860 . - . gene_id "RvY_00400"; transcript_id "RvY_00400.1"; Scaffold001 rebuild transcript 1163500 1163688 . - . gene_id "RvY_00401"; transcript_id "RvY_00401.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1163500 1163688 . - . gene_id "RvY_00401"; transcript_id "RvY_00401.1"; Scaffold001 rebuild transcript 1165099 1172837 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 1165099 1165164 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1165629 1166227 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1166492 1166874 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1167110 1167283 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1167602 1167867 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1168203 1169054 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1170202 1170378 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1171296 1171587 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild exon 1171936 1172837 . + . gene_id "RvY_00402"; transcript_id "RvY_00402.1"; Scaffold001 rebuild transcript 1173902 1175752 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; gene_name "B_lectin"; annotation "hypothetical protein."; Pfam "[B_lectin] D-mannose binding lectin"; CDD "Bulb-type mannose-specific lectin."; Scaffold001 rebuild exon 1173902 1173960 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1174048 1174063 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1174347 1174424 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1174500 1174560 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1174674 1174723 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1174789 1174949 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1175076 1175176 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild exon 1175409 1175752 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.1"; Scaffold001 rebuild transcript 1174028 1175752 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; gene_name "B_lectin"; annotation "hypothetical protein."; Pfam "[B_lectin] D-mannose binding lectin"; CDD "Bulb-type mannose-specific lectin."; Scaffold001 rebuild exon 1174028 1174063 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild exon 1174347 1174424 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild exon 1174500 1174560 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild exon 1174674 1174723 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild exon 1174789 1174949 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild exon 1175076 1175176 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild exon 1175409 1175752 . - . gene_id "RvY_00403"; transcript_id "RvY_00403.2"; Scaffold001 rebuild transcript 1177096 1178435 . + . gene_id "RvY_00404"; transcript_id "RvY_00404.1"; gene_name "ETS"; annotation "hypothetical protein."; Pfam "[Ets] Ets-domain"; CDD "erythroblast transformation specific domain. variation of the helix-turn-helix motif"; similar_genes "EHF_PANPA(e-value:2.3e-10;bit-score:63.0)"; Scaffold001 rebuild exon 1177096 1177180 . + . gene_id "RvY_00404"; transcript_id "RvY_00404.1"; Scaffold001 rebuild exon 1177401 1177637 . + . gene_id "RvY_00404"; transcript_id "RvY_00404.1"; Scaffold001 rebuild exon 1177760 1177933 . + . gene_id "RvY_00404"; transcript_id "RvY_00404.1"; Scaffold001 rebuild exon 1178059 1178272 . + . gene_id "RvY_00404"; transcript_id "RvY_00404.1"; Scaffold001 rebuild exon 1178339 1178435 . + . gene_id "RvY_00404"; transcript_id "RvY_00404.1"; Scaffold001 rebuild transcript 1178944 1180287 . + . gene_id "RvY_00405"; transcript_id "RvY_00405.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1178944 1180287 . + . gene_id "RvY_00405"; transcript_id "RvY_00405.1"; Scaffold001 rebuild transcript 1179337 1180287 . + . gene_id "RvY_00405"; transcript_id "RvY_00405.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1179337 1180287 . + . gene_id "RvY_00405"; transcript_id "RvY_00405.2"; Scaffold001 rebuild transcript 1182773 1184480 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; gene_name "FabG"; annotation "hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase|[KR]"; CDD "Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.184"; similar_genes "CBR1_RAT(e-value:7.6e-07;bit-score:52.0)"; Scaffold001 rebuild exon 1182773 1182853 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; Scaffold001 rebuild exon 1182913 1182994 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; Scaffold001 rebuild exon 1183135 1183507 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; Scaffold001 rebuild exon 1183862 1183987 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; Scaffold001 rebuild exon 1184060 1184210 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; Scaffold001 rebuild exon 1184274 1184480 . + . gene_id "RvY_00406"; transcript_id "RvY_00406.1"; Scaffold001 rebuild transcript 1185384 1187279 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1185384 1185461 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; Scaffold001 rebuild exon 1185524 1185856 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; Scaffold001 rebuild exon 1186082 1186267 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; Scaffold001 rebuild exon 1186328 1186552 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; Scaffold001 rebuild exon 1186672 1186952 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; Scaffold001 rebuild exon 1187063 1187279 . + . gene_id "RvY_00407"; transcript_id "RvY_00407.1"; Scaffold001 rebuild transcript 1187824 1189456 . - . gene_id "RvY_00408"; transcript_id "RvY_00408.1"; annotation "hypothetical protein."; Pfam "[Cytochrom_B561] Eukaryotic cytochrome b561"; Scaffold001 rebuild exon 1187824 1188033 . - . gene_id "RvY_00408"; transcript_id "RvY_00408.1"; Scaffold001 rebuild exon 1188089 1188439 . - . gene_id "RvY_00408"; transcript_id "RvY_00408.1"; Scaffold001 rebuild exon 1188697 1188899 . - . gene_id "RvY_00408"; transcript_id "RvY_00408.1"; Scaffold001 rebuild exon 1189117 1189456 . - . gene_id "RvY_00408"; transcript_id "RvY_00408.1"; Scaffold001 rebuild transcript 1190345 1191627 . - . gene_id "RvY_00409"; transcript_id "RvY_00409.1"; annotation "hypothetical protein."; Pfam "[Cytochrom_B561] Eukaryotic cytochrome b561"; Scaffold001 rebuild exon 1190345 1190665 . - . gene_id "RvY_00409"; transcript_id "RvY_00409.1"; Scaffold001 rebuild exon 1190878 1191098 . - . gene_id "RvY_00409"; transcript_id "RvY_00409.1"; Scaffold001 rebuild exon 1191327 1191627 . - . gene_id "RvY_00409"; transcript_id "RvY_00409.1"; Scaffold001 rebuild transcript 1192755 1193223 . + . gene_id "RvY_00410"; transcript_id "RvY_00410.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1192755 1192865 . + . gene_id "RvY_00410"; transcript_id "RvY_00410.1"; Scaffold001 rebuild exon 1193077 1193223 . + . gene_id "RvY_00410"; transcript_id "RvY_00410.1"; Scaffold001 rebuild transcript 1194814 1195611 . - . gene_id "RvY_00411"; transcript_id "RvY_00411.1"; gene_name "SFRS3"; annotation "putative Splicing factor, arginine/serine-rich 3"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 1194814 1195043 . - . gene_id "RvY_00411"; transcript_id "RvY_00411.1"; Scaffold001 rebuild exon 1195269 1195611 . - . gene_id "RvY_00411"; transcript_id "RvY_00411.1"; Scaffold001 rebuild transcript 1196655 1197566 . - . gene_id "RvY_00412"; transcript_id "RvY_00412.1"; annotation "hypothetical protein."; Pfam "[Crust_neurohorm] Crustacean CHH/MIH/GIH neurohormone family"; Scaffold001 rebuild exon 1196655 1196868 . - . gene_id "RvY_00412"; transcript_id "RvY_00412.1"; Scaffold001 rebuild exon 1197125 1197411 . - . gene_id "RvY_00412"; transcript_id "RvY_00412.1"; Scaffold001 rebuild exon 1197561 1197566 . - . gene_id "RvY_00412"; transcript_id "RvY_00412.1"; Scaffold001 rebuild transcript 1197121 1197408 . - . gene_id "RvY_00412"; transcript_id "RvY_00412.2"; annotation "hypothetical protein."; Pfam "[Crust_neurohorm] Crustacean CHH/MIH/GIH neurohormone family"; Scaffold001 rebuild exon 1197121 1197408 . - . gene_id "RvY_00412"; transcript_id "RvY_00412.2"; Scaffold001 rebuild transcript 1197684 1198124 . + . gene_id "RvY_00413"; transcript_id "RvY_00413.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1197684 1197755 . + . gene_id "RvY_00413"; transcript_id "RvY_00413.1"; Scaffold001 rebuild exon 1197921 1198124 . + . gene_id "RvY_00413"; transcript_id "RvY_00413.1"; Scaffold001 rebuild transcript 1198267 1198509 . + . gene_id "RvY_00414"; transcript_id "RvY_00414.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1198267 1198509 . + . gene_id "RvY_00414"; transcript_id "RvY_00414.1"; Scaffold001 rebuild transcript 1204127 1206629 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; gene_name "RFC3_5"; annotation "Replication factor C subunit 5"; Pfam "[AAA_14] AAA domain|[AAA_22] AAA domain|[Rep_fac_C] Replication factor C C-terminal domain|[AAA] ATPase family associated with various cellular activities (AAA)|[Rad17] Rad17 cell cycle checkpoint protein|[DNA_pol3_delta2] DNA polymerase III, delta subunit"; CDD "replication factor C small subunit; Reviewed"; KO "K10756"; similar_genes "RFC5_HUMAN(e-value:3.6e-68;bit-score:256.0)"; Scaffold001 rebuild exon 1204127 1204262 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; Scaffold001 rebuild exon 1204452 1204742 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; Scaffold001 rebuild exon 1204808 1204967 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; Scaffold001 rebuild exon 1205222 1205511 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; Scaffold001 rebuild exon 1205584 1205638 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; Scaffold001 rebuild exon 1206530 1206629 . + . gene_id "RvY_00415"; transcript_id "RvY_00415.1"; Scaffold001 rebuild transcript 1206947 1210113 . - . gene_id "RvY_00416"; transcript_id "RvY_00416.1"; gene_name "CUL5"; annotation "cullin 5"; Pfam "[Cullin] Cullin family|[Cullin_Nedd8] Cullin protein neddylation domain"; KO "K10612"; similar_genes "CUL5_RABIT(e-value:1.0e-08;bit-score:58.0)"; Scaffold001 rebuild exon 1206947 1207419 . - . gene_id "RvY_00416"; transcript_id "RvY_00416.1"; Scaffold001 rebuild exon 1207568 1207921 . - . gene_id "RvY_00416"; transcript_id "RvY_00416.1"; Scaffold001 rebuild exon 1208186 1208727 . - . gene_id "RvY_00416"; transcript_id "RvY_00416.1"; Scaffold001 rebuild exon 1208855 1209387 . - . gene_id "RvY_00416"; transcript_id "RvY_00416.1"; Scaffold001 rebuild exon 1209640 1210113 . - . gene_id "RvY_00416"; transcript_id "RvY_00416.1"; Scaffold001 rebuild transcript 1210634 1216748 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_23] AAA domain|[AAA_21] AAA domain"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold001 rebuild exon 1210634 1210727 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1210796 1210899 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1210955 1211257 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1211524 1211760 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1211817 1212091 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1212331 1212701 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1212777 1212892 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1212967 1213179 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1213248 1213444 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1213788 1213975 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1214037 1214320 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1214638 1215009 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1215089 1215190 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1215416 1215558 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1215683 1215828 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1215905 1216010 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1216116 1216344 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild exon 1216575 1216748 . - . gene_id "RvY_00417"; transcript_id "RvY_00417.1"; Scaffold001 rebuild transcript 1218099 1220277 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 1218099 1218455 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1218543 1218603 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1218681 1218758 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1218870 1219108 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1219326 1219538 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1219620 1219710 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1219782 1220109 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild exon 1220190 1220277 . + . gene_id "RvY_00418"; transcript_id "RvY_00418.3"; Scaffold001 rebuild transcript 1220580 1221603 . - . gene_id "RvY_00419"; transcript_id "RvY_00419.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1220580 1221298 . - . gene_id "RvY_00419"; transcript_id "RvY_00419.1"; Scaffold001 rebuild exon 1221423 1221603 . - . gene_id "RvY_00419"; transcript_id "RvY_00419.1"; Scaffold001 rebuild transcript 1223053 1223313 . - . gene_id "RvY_00420"; transcript_id "RvY_00420.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1223053 1223313 . - . gene_id "RvY_00420"; transcript_id "RvY_00420.1"; Scaffold001 rebuild transcript 1225780 1226094 . + . gene_id "RvY_00421"; transcript_id "RvY_00421.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1225780 1226094 . + . gene_id "RvY_00421"; transcript_id "RvY_00421.1"; Scaffold001 rebuild transcript 1228532 1228723 . - . gene_id "RvY_00422"; transcript_id "RvY_00422.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1228532 1228723 . - . gene_id "RvY_00422"; transcript_id "RvY_00422.1"; Scaffold001 rebuild transcript 1231340 1232650 . + . gene_id "RvY_00423"; transcript_id "RvY_00423.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A|[Trypsin]"; CDD "Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold001 rebuild exon 1231340 1231696 . + . gene_id "RvY_00423"; transcript_id "RvY_00423.1"; Scaffold001 rebuild exon 1231784 1231844 . + . gene_id "RvY_00423"; transcript_id "RvY_00423.1"; Scaffold001 rebuild exon 1231922 1231999 . + . gene_id "RvY_00423"; transcript_id "RvY_00423.1"; Scaffold001 rebuild exon 1232111 1232349 . + . gene_id "RvY_00423"; transcript_id "RvY_00423.1"; Scaffold001 rebuild exon 1232567 1232650 . + . gene_id "RvY_00423"; transcript_id "RvY_00423.1"; Scaffold001 rebuild transcript 1236298 1238512 . + . gene_id "RvY_00424"; transcript_id "RvY_00424.1"; gene_name "PEN2"; annotation "presenilin enhancer 2"; Pfam "[DDE_1] DDE superfamily endonuclease|[PEN-2] Presenilin enhancer-2 subunit of gamma secretase"; KO "K06170"; similar_genes "PEN2_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold001 rebuild exon 1236298 1236472 . + . gene_id "RvY_00424"; transcript_id "RvY_00424.1"; Scaffold001 rebuild exon 1236701 1237212 . + . gene_id "RvY_00424"; transcript_id "RvY_00424.1"; Scaffold001 rebuild exon 1237365 1237580 . + . gene_id "RvY_00424"; transcript_id "RvY_00424.1"; Scaffold001 rebuild exon 1238168 1238512 . + . gene_id "RvY_00424"; transcript_id "RvY_00424.1"; Scaffold001 rebuild transcript 1239193 1240903 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; gene_name "ETS"; annotation "hypothetical protein."; Pfam "[Ets] Ets-domain"; CDD "erythroblast transformation specific domain. variation of the helix-turn-helix motif"; similar_genes "ELF3_HUMAN(e-value:1.4e-12;bit-score:71.0)"; Scaffold001 rebuild exon 1239193 1239295 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild exon 1239360 1239564 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild exon 1239631 1239906 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild exon 1240007 1240225 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild exon 1240291 1240422 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild exon 1240487 1240529 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild exon 1240676 1240903 . - . gene_id "RvY_00425"; transcript_id "RvY_00425.1"; Scaffold001 rebuild transcript 1241735 1245025 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; gene_name "MCOLN1"; annotation "mucolipin 1"; Pfam "[PKD_channel] Polycystin cation channel"; CDD "Polycystin cation channel. This family contains the cation channel region of PKD1 and PKD2 proteins."; KO "K04992"; similar_genes "MCLN3_MOUSE(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 1241735 1242250 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; Scaffold001 rebuild exon 1242497 1243033 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; Scaffold001 rebuild exon 1243103 1243320 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; Scaffold001 rebuild exon 1243655 1244042 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; Scaffold001 rebuild exon 1244235 1244435 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; Scaffold001 rebuild exon 1244747 1245025 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.1"; Scaffold001 rebuild transcript 1241735 1245025 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; gene_name "MCOLN1"; annotation "mucolipin 1"; Pfam "[PKD_channel] Polycystin cation channel"; CDD "Polycystin cation channel. This family contains the cation channel region of PKD1 and PKD2 proteins."; KO "K04992"; similar_genes "MCLN3_MOUSE(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 1241735 1242250 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; Scaffold001 rebuild exon 1242497 1243033 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; Scaffold001 rebuild exon 1243103 1243316 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; Scaffold001 rebuild exon 1243651 1244042 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; Scaffold001 rebuild exon 1244235 1244435 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; Scaffold001 rebuild exon 1244747 1245025 . + . gene_id "RvY_00426"; transcript_id "RvY_00426.2"; Scaffold001 rebuild transcript 1249070 1250589 . + . gene_id "RvY_00427"; transcript_id "RvY_00427.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain"; Scaffold001 rebuild exon 1249070 1249328 . + . gene_id "RvY_00427"; transcript_id "RvY_00427.1"; Scaffold001 rebuild exon 1249388 1249666 . + . gene_id "RvY_00427"; transcript_id "RvY_00427.1"; Scaffold001 rebuild exon 1250194 1250385 . + . gene_id "RvY_00427"; transcript_id "RvY_00427.1"; Scaffold001 rebuild exon 1250516 1250589 . + . gene_id "RvY_00427"; transcript_id "RvY_00427.1"; Scaffold001 rebuild transcript 1250670 1251155 . + . gene_id "RvY_00428"; transcript_id "RvY_00428.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1250670 1251155 . + . gene_id "RvY_00428"; transcript_id "RvY_00428.1"; Scaffold001 rebuild transcript 1251675 1254810 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1251675 1251820 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1251887 1251991 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1252068 1252163 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1252492 1252581 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1252659 1252763 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1252832 1252951 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1253051 1253149 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1253425 1253463 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1253541 1254111 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1254291 1254430 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1254487 1254636 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild exon 1254696 1254810 . - . gene_id "RvY_00429"; transcript_id "RvY_00429.1"; Scaffold001 rebuild transcript 1256002 1256639 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1256002 1256046 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.1"; Scaffold001 rebuild exon 1256112 1256191 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.1"; Scaffold001 rebuild exon 1256291 1256639 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.1"; Scaffold001 rebuild transcript 1256002 1256639 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1256002 1256046 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.2"; Scaffold001 rebuild exon 1256112 1256191 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.2"; Scaffold001 rebuild exon 1256345 1256639 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.2"; Scaffold001 rebuild transcript 1256283 1256639 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1256283 1256639 . - . gene_id "RvY_00430"; transcript_id "RvY_00430.3"; Scaffold001 rebuild transcript 1256859 1257871 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1256859 1257068 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.1"; Scaffold001 rebuild exon 1257356 1257492 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.1"; Scaffold001 rebuild exon 1257556 1257871 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.1"; Scaffold001 rebuild transcript 1256859 1257878 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1256859 1257068 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.2"; Scaffold001 rebuild exon 1257356 1257492 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.2"; Scaffold001 rebuild exon 1257556 1257705 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.2"; Scaffold001 rebuild exon 1257764 1257878 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.2"; Scaffold001 rebuild transcript 1256859 1257529 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1256859 1257068 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.3"; Scaffold001 rebuild exon 1257356 1257529 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.3"; Scaffold001 rebuild transcript 1257533 1257871 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1257533 1257871 . - . gene_id "RvY_00431"; transcript_id "RvY_00431.4"; Scaffold001 rebuild transcript 1258637 1261534 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1258637 1258716 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1258788 1258892 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1258962 1259048 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1259497 1259586 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1259662 1259766 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1259836 1259931 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1260001 1260784 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1261021 1261160 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1261218 1261367 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild exon 1261426 1261534 . - . gene_id "RvY_00432"; transcript_id "RvY_00432.1"; Scaffold001 rebuild transcript 1262414 1262842 . - . gene_id "RvY_00433"; transcript_id "RvY_00433.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1262414 1262842 . - . gene_id "RvY_00433"; transcript_id "RvY_00433.1"; Scaffold001 rebuild transcript 1263001 1263875 . - . gene_id "RvY_00434"; transcript_id "RvY_00434.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1263001 1263236 . - . gene_id "RvY_00434"; transcript_id "RvY_00434.1"; Scaffold001 rebuild exon 1263543 1263692 . - . gene_id "RvY_00434"; transcript_id "RvY_00434.1"; Scaffold001 rebuild exon 1263764 1263875 . - . gene_id "RvY_00434"; transcript_id "RvY_00434.1"; Scaffold001 rebuild transcript 1264006 1264623 . - . gene_id "RvY_00435"; transcript_id "RvY_00435.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1264006 1264104 . - . gene_id "RvY_00435"; transcript_id "RvY_00435.1"; Scaffold001 rebuild exon 1264258 1264623 . - . gene_id "RvY_00435"; transcript_id "RvY_00435.1"; Scaffold001 rebuild transcript 1265795 1267063 . - . gene_id "RvY_00436"; transcript_id "RvY_00436.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1265795 1266340 . - . gene_id "RvY_00436"; transcript_id "RvY_00436.1"; Scaffold001 rebuild exon 1266516 1266628 . - . gene_id "RvY_00436"; transcript_id "RvY_00436.1"; Scaffold001 rebuild exon 1266685 1267063 . - . gene_id "RvY_00436"; transcript_id "RvY_00436.1"; Scaffold001 rebuild transcript 1267087 1268139 . + . gene_id "RvY_00437"; transcript_id "RvY_00437.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1267087 1267234 . + . gene_id "RvY_00437"; transcript_id "RvY_00437.1"; Scaffold001 rebuild exon 1267255 1267539 . + . gene_id "RvY_00437"; transcript_id "RvY_00437.1"; Scaffold001 rebuild exon 1267608 1267712 . + . gene_id "RvY_00437"; transcript_id "RvY_00437.1"; Scaffold001 rebuild exon 1268036 1268139 . + . gene_id "RvY_00437"; transcript_id "RvY_00437.1"; Scaffold001 rebuild transcript 1269578 1270027 . - . gene_id "RvY_00438"; transcript_id "RvY_00438.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1269578 1270027 . - . gene_id "RvY_00438"; transcript_id "RvY_00438.1"; Scaffold001 rebuild transcript 1271305 1273188 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; gene_name "H2A"; annotation "histone H2A"; Pfam "[Macro]|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1""-p (ADP-ribose-1""-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-ribose, but does bind the monomeric SirT1 metabolite O-acetyl-ADP-ribose (OAADPR) with high affinity through its macro domain. In addition, the macro domain of macroH2A associates with histone deacetylases and affects the acetylation status of nucleosomes. MacroH2A-containing nucleosomes are repressive toward transcription."; KO "K11251"; similar_genes "H2AY_CHICK(e-value:4.5e-09;bit-score:59.0)"; Scaffold001 rebuild exon 1271305 1271473 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1271693 1271873 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1272138 1272312 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1272386 1272655 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1272720 1272764 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1272825 1272881 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1272951 1273103 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild exon 1273183 1273188 . - . gene_id "RvY_00439"; transcript_id "RvY_00439.1"; Scaffold001 rebuild transcript 1273774 1274660 . - . gene_id "RvY_00440"; transcript_id "RvY_00440.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1273774 1274081 . - . gene_id "RvY_00440"; transcript_id "RvY_00440.1"; Scaffold001 rebuild exon 1274225 1274660 . - . gene_id "RvY_00440"; transcript_id "RvY_00440.1"; Scaffold001 rebuild transcript 1275186 1276439 . - . gene_id "RvY_00441"; transcript_id "RvY_00441.1"; gene_name "COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "Predicted flavoprotein [General function prediction only]"; Scaffold001 rebuild exon 1275186 1275206 . - . gene_id "RvY_00441"; transcript_id "RvY_00441.1"; Scaffold001 rebuild exon 1275296 1275426 . - . gene_id "RvY_00441"; transcript_id "RvY_00441.1"; Scaffold001 rebuild exon 1275657 1275781 . - . gene_id "RvY_00441"; transcript_id "RvY_00441.1"; Scaffold001 rebuild exon 1275892 1276124 . - . gene_id "RvY_00441"; transcript_id "RvY_00441.1"; Scaffold001 rebuild exon 1276347 1276439 . - . gene_id "RvY_00441"; transcript_id "RvY_00441.1"; Scaffold001 rebuild transcript 1277076 1278787 . - . gene_id "RvY_00442"; transcript_id "RvY_00442.1"; gene_name "COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "Predicted flavoprotein [General function prediction only]"; Scaffold001 rebuild exon 1277076 1277245 . - . gene_id "RvY_00442"; transcript_id "RvY_00442.1"; Scaffold001 rebuild exon 1277322 1277507 . - . gene_id "RvY_00442"; transcript_id "RvY_00442.1"; Scaffold001 rebuild exon 1277605 1277739 . - . gene_id "RvY_00442"; transcript_id "RvY_00442.1"; Scaffold001 rebuild exon 1277835 1278278 . - . gene_id "RvY_00442"; transcript_id "RvY_00442.1"; Scaffold001 rebuild exon 1278661 1278787 . - . gene_id "RvY_00442"; transcript_id "RvY_00442.1"; Scaffold001 rebuild transcript 1279407 1281509 . - . gene_id "RvY_00443"; transcript_id "RvY_00443.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1279407 1279885 . - . gene_id "RvY_00443"; transcript_id "RvY_00443.1"; Scaffold001 rebuild exon 1279994 1280102 . - . gene_id "RvY_00443"; transcript_id "RvY_00443.1"; Scaffold001 rebuild exon 1280168 1280868 . - . gene_id "RvY_00443"; transcript_id "RvY_00443.1"; Scaffold001 rebuild exon 1280931 1281380 . - . gene_id "RvY_00443"; transcript_id "RvY_00443.1"; Scaffold001 rebuild exon 1281449 1281509 . - . gene_id "RvY_00443"; transcript_id "RvY_00443.1"; Scaffold001 rebuild transcript 1284119 1284508 . - . gene_id "RvY_00444"; transcript_id "RvY_00444.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1284119 1284244 . - . gene_id "RvY_00444"; transcript_id "RvY_00444.1"; Scaffold001 rebuild exon 1284431 1284508 . - . gene_id "RvY_00444"; transcript_id "RvY_00444.1"; Scaffold001 rebuild transcript 1284564 1285035 . - . gene_id "RvY_00445"; transcript_id "RvY_00445.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1284564 1284733 . - . gene_id "RvY_00445"; transcript_id "RvY_00445.1"; Scaffold001 rebuild exon 1284984 1285035 . - . gene_id "RvY_00445"; transcript_id "RvY_00445.1"; Scaffold001 rebuild transcript 1286832 1287332 . - . gene_id "RvY_00446"; transcript_id "RvY_00446.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1286832 1287145 . - . gene_id "RvY_00446"; transcript_id "RvY_00446.1"; Scaffold001 rebuild exon 1287170 1287332 . - . gene_id "RvY_00446"; transcript_id "RvY_00446.1"; Scaffold001 rebuild transcript 1288071 1290352 . - . gene_id "RvY_00447"; transcript_id "RvY_00447.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1288071 1288271 . - . gene_id "RvY_00447"; transcript_id "RvY_00447.1"; Scaffold001 rebuild exon 1289452 1289960 . - . gene_id "RvY_00447"; transcript_id "RvY_00447.1"; Scaffold001 rebuild exon 1290046 1290352 . - . gene_id "RvY_00447"; transcript_id "RvY_00447.1"; Scaffold001 rebuild transcript 1293725 1293934 . - . gene_id "RvY_00448"; transcript_id "RvY_00448.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1293725 1293934 . - . gene_id "RvY_00448"; transcript_id "RvY_00448.1"; Scaffold001 rebuild transcript 1294201 1297315 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.1"; annotation "hypothetical protein."; Pfam "[Fasciclin]"; Scaffold001 rebuild exon 1294201 1294335 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.1"; Scaffold001 rebuild exon 1296061 1296223 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.1"; Scaffold001 rebuild exon 1296304 1296452 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.1"; Scaffold001 rebuild exon 1296555 1296745 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.1"; Scaffold001 rebuild exon 1296820 1297315 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.1"; Scaffold001 rebuild transcript 1297194 1298470 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.2"; annotation "hypothetical protein."; Pfam "[Fasciclin]"; Scaffold001 rebuild exon 1297194 1297650 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.2"; Scaffold001 rebuild exon 1297721 1298043 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.2"; Scaffold001 rebuild exon 1298120 1298470 . + . gene_id "RvY_00449"; transcript_id "RvY_00449.2"; Scaffold001 rebuild transcript 1299862 1300523 . - . gene_id "RvY_00450"; transcript_id "RvY_00450.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1299862 1300029 . - . gene_id "RvY_00450"; transcript_id "RvY_00450.1"; Scaffold001 rebuild exon 1300371 1300523 . - . gene_id "RvY_00450"; transcript_id "RvY_00450.1"; Scaffold001 rebuild transcript 1299865 1300080 . - . gene_id "RvY_00450"; transcript_id "RvY_00450.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1299865 1300080 . - . gene_id "RvY_00450"; transcript_id "RvY_00450.2"; Scaffold001 rebuild transcript 1302315 1302488 . + . gene_id "RvY_00451"; transcript_id "RvY_00451.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1302315 1302488 . + . gene_id "RvY_00451"; transcript_id "RvY_00451.1"; Scaffold001 rebuild transcript 1302825 1303154 . - . gene_id "RvY_00452"; transcript_id "RvY_00452.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1302825 1303154 . - . gene_id "RvY_00452"; transcript_id "RvY_00452.1"; Scaffold001 rebuild transcript 1305133 1306073 . - . gene_id "RvY_00453"; transcript_id "RvY_00453.1"; gene_name "COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "Predicted flavoprotein [General function prediction only]"; Scaffold001 rebuild exon 1305133 1305347 . - . gene_id "RvY_00453"; transcript_id "RvY_00453.1"; Scaffold001 rebuild exon 1305418 1305501 . - . gene_id "RvY_00453"; transcript_id "RvY_00453.1"; Scaffold001 rebuild exon 1305595 1305831 . - . gene_id "RvY_00453"; transcript_id "RvY_00453.1"; Scaffold001 rebuild exon 1305938 1306073 . - . gene_id "RvY_00453"; transcript_id "RvY_00453.1"; Scaffold001 rebuild transcript 1306407 1307355 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.1"; gene_name "COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "Predicted flavoprotein [General function prediction only]"; Scaffold001 rebuild exon 1306407 1306448 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.1"; Scaffold001 rebuild exon 1306522 1306649 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.1"; Scaffold001 rebuild exon 1306719 1306904 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.1"; Scaffold001 rebuild exon 1306980 1307123 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.1"; Scaffold001 rebuild exon 1307220 1307355 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.1"; Scaffold001 rebuild transcript 1306513 1307355 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.2"; gene_name "COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "Predicted flavoprotein [General function prediction only]"; Scaffold001 rebuild exon 1306513 1306649 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.2"; Scaffold001 rebuild exon 1306719 1306904 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.2"; Scaffold001 rebuild exon 1306980 1307123 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.2"; Scaffold001 rebuild exon 1307220 1307355 . - . gene_id "RvY_00454"; transcript_id "RvY_00454.2"; Scaffold001 rebuild transcript 1307357 1307563 . + . gene_id "RvY_00455"; transcript_id "RvY_00455.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1307357 1307563 . + . gene_id "RvY_00455"; transcript_id "RvY_00455.1"; Scaffold001 rebuild transcript 1307825 1310144 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; gene_name "LIC"; annotation "hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; Scaffold001 rebuild exon 1307825 1307834 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1307889 1308171 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1308234 1308384 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1308454 1308533 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1308623 1308760 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1308841 1308923 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1308989 1309037 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1309326 1309500 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1309603 1309667 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1309769 1309902 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild exon 1310044 1310144 . - . gene_id "RvY_00456"; transcript_id "RvY_00456.1"; Scaffold001 rebuild transcript 1312401 1313309 . + . gene_id "RvY_00457"; transcript_id "RvY_00457.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1312401 1312542 . + . gene_id "RvY_00457"; transcript_id "RvY_00457.1"; Scaffold001 rebuild exon 1312646 1312960 . + . gene_id "RvY_00457"; transcript_id "RvY_00457.1"; Scaffold001 rebuild exon 1313032 1313309 . + . gene_id "RvY_00457"; transcript_id "RvY_00457.1"; Scaffold001 rebuild transcript 1313646 1313780 . - . gene_id "RvY_00458"; transcript_id "RvY_00458.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1313646 1313780 . - . gene_id "RvY_00458"; transcript_id "RvY_00458.1"; Scaffold001 rebuild transcript 1315599 1318702 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1315599 1315659 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild exon 1315773 1316309 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild exon 1316544 1316975 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild exon 1317189 1317802 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild exon 1318001 1318115 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild exon 1318183 1318611 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild exon 1318677 1318702 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.1"; Scaffold001 rebuild transcript 1315599 1318702 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1315599 1315659 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1315773 1315850 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1316031 1316309 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1316544 1316975 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1317189 1317802 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1318001 1318115 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1318183 1318611 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild exon 1318677 1318702 . + . gene_id "RvY_00459"; transcript_id "RvY_00459.2"; Scaffold001 rebuild transcript 1318968 1322641 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 1318968 1319214 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1319315 1319419 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1319526 1319953 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1320216 1320539 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1320606 1320962 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1321121 1321291 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1321391 1321555 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1321677 1321826 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1321924 1322498 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild exon 1322599 1322641 . - . gene_id "RvY_00460"; transcript_id "RvY_00460.1"; Scaffold001 rebuild transcript 1323700 1324047 . + . gene_id "RvY_00461"; transcript_id "RvY_00461.1"; gene_name "kgd"; annotation "hypothetical protein."; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; similar_genes "PAN1_NEUCR(e-value:1.0e-08;bit-score:58.0)"; Scaffold001 rebuild exon 1323700 1324047 . + . gene_id "RvY_00461"; transcript_id "RvY_00461.1"; Scaffold001 rebuild transcript 1325280 1325735 . + . gene_id "RvY_00462"; transcript_id "RvY_00462.1"; annotation "hypothetical protein."; similar_genes "PRP_PIG(e-value:3.2e-18;bit-score:90.0)"; Scaffold001 rebuild exon 1325280 1325735 . + . gene_id "RvY_00462"; transcript_id "RvY_00462.1"; Scaffold001 rebuild transcript 1327345 1328322 . + . gene_id "RvY_00463"; transcript_id "RvY_00463.1"; gene_name "BARX"; annotation "BarH-like homeobox"; Pfam "[Homeobox]"; KO "K09361"; similar_genes "BARX2_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold001 rebuild exon 1327345 1327676 . + . gene_id "RvY_00463"; transcript_id "RvY_00463.1"; Scaffold001 rebuild exon 1327941 1328027 . + . gene_id "RvY_00463"; transcript_id "RvY_00463.1"; Scaffold001 rebuild exon 1328157 1328322 . + . gene_id "RvY_00463"; transcript_id "RvY_00463.1"; Scaffold001 rebuild transcript 1330684 1332092 . - . gene_id "RvY_00464"; transcript_id "RvY_00464.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1330684 1331209 . - . gene_id "RvY_00464"; transcript_id "RvY_00464.1"; Scaffold001 rebuild exon 1331685 1331910 . - . gene_id "RvY_00464"; transcript_id "RvY_00464.1"; Scaffold001 rebuild exon 1331975 1332092 . - . gene_id "RvY_00464"; transcript_id "RvY_00464.1"; Scaffold001 rebuild transcript 1337793 1342549 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; gene_name "KH"; annotation "putative RNA-binding protein MEX3A"; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[KH_3] KH domain|[KH_1] KH domain"; CDD "K homology RNA-binding domain."; KO "K15686"; similar_genes "MEX3A_HUMAN(e-value:5.4e-31;bit-score:132.0)"; Scaffold001 rebuild exon 1337793 1337871 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild exon 1338575 1338823 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild exon 1340753 1340952 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild exon 1341080 1341287 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild exon 1341353 1341523 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild exon 1341632 1342021 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild exon 1342344 1342549 . + . gene_id "RvY_00465"; transcript_id "RvY_00465.1"; Scaffold001 rebuild transcript 1348926 1350533 . + . gene_id "RvY_00467"; transcript_id "RvY_00467.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1348926 1349148 . + . gene_id "RvY_00467"; transcript_id "RvY_00467.1"; Scaffold001 rebuild exon 1349239 1349495 . + . gene_id "RvY_00467"; transcript_id "RvY_00467.1"; Scaffold001 rebuild exon 1349595 1349876 . + . gene_id "RvY_00467"; transcript_id "RvY_00467.1"; Scaffold001 rebuild exon 1349973 1350533 . + . gene_id "RvY_00467"; transcript_id "RvY_00467.1"; Scaffold001 rebuild transcript 1352100 1353899 . + . gene_id "RvY_00468"; transcript_id "RvY_00468.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1352100 1352322 . + . gene_id "RvY_00468"; transcript_id "RvY_00468.1"; Scaffold001 rebuild exon 1352395 1352849 . + . gene_id "RvY_00468"; transcript_id "RvY_00468.1"; Scaffold001 rebuild exon 1352920 1353228 . + . gene_id "RvY_00468"; transcript_id "RvY_00468.1"; Scaffold001 rebuild exon 1353321 1353899 . + . gene_id "RvY_00468"; transcript_id "RvY_00468.1"; Scaffold001 rebuild transcript 1354624 1354797 . + . gene_id "RvY_00469"; transcript_id "RvY_00469.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1354624 1354797 . + . gene_id "RvY_00469"; transcript_id "RvY_00469.1"; Scaffold001 rebuild transcript 1355569 1356367 . - . gene_id "RvY_00470"; transcript_id "RvY_00470.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1355569 1356008 . - . gene_id "RvY_00470"; transcript_id "RvY_00470.1"; Scaffold001 rebuild exon 1356175 1356367 . - . gene_id "RvY_00470"; transcript_id "RvY_00470.1"; Scaffold001 rebuild transcript 1356167 1356508 . - . gene_id "RvY_00470"; transcript_id "RvY_00470.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1356167 1356508 . - . gene_id "RvY_00470"; transcript_id "RvY_00470.2"; Scaffold001 rebuild transcript 1357818 1359440 . + . gene_id "RvY_00471"; transcript_id "RvY_00471.1"; gene_name "COG5368"; annotation "hypothetical protein."; Pfam "[Glycoamylase] Putative glucoamylase"; CDD "Uncharacterized protein conserved in bacteria [Function unknown]"; Scaffold001 rebuild exon 1357818 1358557 . + . gene_id "RvY_00471"; transcript_id "RvY_00471.1"; Scaffold001 rebuild exon 1358656 1358925 . + . gene_id "RvY_00471"; transcript_id "RvY_00471.1"; Scaffold001 rebuild exon 1358996 1359440 . + . gene_id "RvY_00471"; transcript_id "RvY_00471.1"; Scaffold001 rebuild transcript 1359545 1360400 . - . gene_id "RvY_00472"; transcript_id "RvY_00472.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1359545 1359635 . - . gene_id "RvY_00472"; transcript_id "RvY_00472.1"; Scaffold001 rebuild exon 1359706 1359944 . - . gene_id "RvY_00472"; transcript_id "RvY_00472.1"; Scaffold001 rebuild exon 1360026 1360400 . - . gene_id "RvY_00472"; transcript_id "RvY_00472.1"; Scaffold001 rebuild transcript 1360716 1361360 . - . gene_id "RvY_00473"; transcript_id "RvY_00473.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1360716 1360768 . - . gene_id "RvY_00473"; transcript_id "RvY_00473.1"; Scaffold001 rebuild exon 1361108 1361360 . - . gene_id "RvY_00473"; transcript_id "RvY_00473.1"; Scaffold001 rebuild transcript 1361511 1361795 . - . gene_id "RvY_00474"; transcript_id "RvY_00474.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1361511 1361795 . - . gene_id "RvY_00474"; transcript_id "RvY_00474.1"; Scaffold001 rebuild transcript 1362422 1363142 . - . gene_id "RvY_00475"; transcript_id "RvY_00475.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1362422 1362546 . - . gene_id "RvY_00475"; transcript_id "RvY_00475.1"; Scaffold001 rebuild exon 1362968 1363142 . - . gene_id "RvY_00475"; transcript_id "RvY_00475.1"; Scaffold001 rebuild transcript 1364861 1367911 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1364861 1365088 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; Scaffold001 rebuild exon 1365148 1365239 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; Scaffold001 rebuild exon 1365315 1365602 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; Scaffold001 rebuild exon 1365681 1367018 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; Scaffold001 rebuild exon 1367085 1367516 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; Scaffold001 rebuild exon 1367584 1367911 . - . gene_id "RvY_00476"; transcript_id "RvY_00476.1"; Scaffold001 rebuild transcript 1372453 1373360 . - . gene_id "RvY_00477"; transcript_id "RvY_00477.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold001 rebuild exon 1372453 1372767 . - . gene_id "RvY_00477"; transcript_id "RvY_00477.1"; Scaffold001 rebuild exon 1373004 1373360 . - . gene_id "RvY_00477"; transcript_id "RvY_00477.1"; Scaffold001 rebuild transcript 1373991 1375250 . - . gene_id "RvY_00478"; transcript_id "RvY_00478.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1373991 1374629 . - . gene_id "RvY_00478"; transcript_id "RvY_00478.1"; Scaffold001 rebuild exon 1375173 1375250 . - . gene_id "RvY_00478"; transcript_id "RvY_00478.1"; Scaffold001 rebuild transcript 1374084 1374770 . - . gene_id "RvY_00478"; transcript_id "RvY_00478.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1374084 1374770 . - . gene_id "RvY_00478"; transcript_id "RvY_00478.2"; Scaffold001 rebuild transcript 1379040 1387009 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; gene_name "LAMC1"; annotation "Laminin-like protein lam-2"; Pfam "[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Laminin_B] Laminin B (Domain IV)|[Laminin_N] Laminin N-terminal (Domain VI)"; CDD "Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins."; KO "K05635"; similar_genes "LAM2_CAEEL(e-value:2.1e-64;bit-score:243.0)"; Scaffold001 rebuild exon 1379040 1379302 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1379744 1380015 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1380494 1381099 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1381452 1381824 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1381891 1382102 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1382283 1382638 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1382814 1383297 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1383360 1383632 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1384262 1384459 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1384520 1384836 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1385021 1385407 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1385474 1385983 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1386051 1386326 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1386403 1386661 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild exon 1386756 1387009 . + . gene_id "RvY_00479"; transcript_id "RvY_00479.1"; Scaffold001 rebuild transcript 1387347 1387526 . - . gene_id "RvY_00480"; transcript_id "RvY_00480.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1387347 1387526 . - . gene_id "RvY_00480"; transcript_id "RvY_00480.1"; Scaffold001 rebuild transcript 1388566 1390161 . - . gene_id "RvY_00481"; transcript_id "RvY_00481.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1388566 1388778 . - . gene_id "RvY_00481"; transcript_id "RvY_00481.1"; Scaffold001 rebuild exon 1389829 1390161 . - . gene_id "RvY_00481"; transcript_id "RvY_00481.1"; Scaffold001 rebuild transcript 1393297 1393728 . + . gene_id "RvY_00482"; transcript_id "RvY_00482.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1393297 1393728 . + . gene_id "RvY_00482"; transcript_id "RvY_00482.1"; Scaffold001 rebuild transcript 1393892 1395557 . - . gene_id "RvY_00483"; transcript_id "RvY_00483.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 1393892 1394022 . - . gene_id "RvY_00483"; transcript_id "RvY_00483.1"; Scaffold001 rebuild exon 1395209 1395557 . - . gene_id "RvY_00483"; transcript_id "RvY_00483.1"; Scaffold001 rebuild transcript 1396030 1396768 . - . gene_id "RvY_00484"; transcript_id "RvY_00484.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1396030 1396583 . - . gene_id "RvY_00484"; transcript_id "RvY_00484.1"; Scaffold001 rebuild exon 1396651 1396768 . - . gene_id "RvY_00484"; transcript_id "RvY_00484.1"; Scaffold001 rebuild transcript 1397367 1397789 . + . gene_id "RvY_00485"; transcript_id "RvY_00485.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1397367 1397789 . + . gene_id "RvY_00485"; transcript_id "RvY_00485.1"; Scaffold001 rebuild transcript 1399681 1402076 . + . gene_id "RvY_00486"; transcript_id "RvY_00486.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1399681 1400256 . + . gene_id "RvY_00486"; transcript_id "RvY_00486.1"; Scaffold001 rebuild exon 1401945 1402076 . + . gene_id "RvY_00486"; transcript_id "RvY_00486.1"; Scaffold001 rebuild transcript 1405174 1405434 . + . gene_id "RvY_00487"; transcript_id "RvY_00487.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1405174 1405434 . + . gene_id "RvY_00487"; transcript_id "RvY_00487.1"; Scaffold001 rebuild transcript 1410537 1411914 . + . gene_id "RvY_00488"; transcript_id "RvY_00488.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1410537 1410905 . + . gene_id "RvY_00488"; transcript_id "RvY_00488.1"; Scaffold001 rebuild exon 1411312 1411678 . + . gene_id "RvY_00488"; transcript_id "RvY_00488.1"; Scaffold001 rebuild exon 1411754 1411914 . + . gene_id "RvY_00488"; transcript_id "RvY_00488.1"; Scaffold001 rebuild transcript 1412546 1413265 . + . gene_id "RvY_00489"; transcript_id "RvY_00489.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 1412546 1413265 . + . gene_id "RvY_00489"; transcript_id "RvY_00489.1"; Scaffold001 rebuild transcript 1414007 1417061 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1414007 1414218 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1414295 1414576 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1414850 1414967 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1415287 1415415 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1415469 1415549 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1415626 1415724 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1415897 1416304 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1416462 1416715 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1416818 1416907 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild exon 1416980 1417061 . - . gene_id "RvY_00490"; transcript_id "RvY_00490.1"; Scaffold001 rebuild transcript 1417517 1417876 . + . gene_id "RvY_00491"; transcript_id "RvY_00491.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1417517 1417618 . + . gene_id "RvY_00491"; transcript_id "RvY_00491.1"; Scaffold001 rebuild exon 1417700 1417876 . + . gene_id "RvY_00491"; transcript_id "RvY_00491.1"; Scaffold001 rebuild transcript 1418048 1418852 . - . gene_id "RvY_00492"; transcript_id "RvY_00492.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1418048 1418314 . - . gene_id "RvY_00492"; transcript_id "RvY_00492.1"; Scaffold001 rebuild exon 1418371 1418494 . - . gene_id "RvY_00492"; transcript_id "RvY_00492.1"; Scaffold001 rebuild exon 1418558 1418703 . - . gene_id "RvY_00492"; transcript_id "RvY_00492.1"; Scaffold001 rebuild exon 1418793 1418852 . - . gene_id "RvY_00492"; transcript_id "RvY_00492.1"; Scaffold001 rebuild transcript 1419301 1420321 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1419301 1419784 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.1"; Scaffold001 rebuild exon 1419872 1420095 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.1"; Scaffold001 rebuild exon 1420268 1420321 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.1"; Scaffold001 rebuild transcript 1418860 1419415 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1418860 1419064 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.2"; Scaffold001 rebuild exon 1419213 1419415 . - . gene_id "RvY_00493"; transcript_id "RvY_00493.2"; Scaffold001 rebuild transcript 1418898 1419089 . + . gene_id "RvY_00494"; transcript_id "RvY_00494.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1418898 1419089 . + . gene_id "RvY_00494"; transcript_id "RvY_00494.1"; Scaffold001 rebuild transcript 1421476 1423028 . + . gene_id "RvY_00495"; transcript_id "RvY_00495.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1421476 1421827 . + . gene_id "RvY_00495"; transcript_id "RvY_00495.1"; Scaffold001 rebuild exon 1422160 1423028 . + . gene_id "RvY_00495"; transcript_id "RvY_00495.1"; Scaffold001 rebuild transcript 1423333 1425324 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 1423333 1423565 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild exon 1423629 1423794 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild exon 1423859 1424085 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild exon 1424194 1424419 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild exon 1424522 1424572 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild exon 1424670 1424845 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild exon 1424916 1425324 . - . gene_id "RvY_00496"; transcript_id "RvY_00496.1"; Scaffold001 rebuild transcript 1427134 1431055 . - . gene_id "RvY_00497"; transcript_id "RvY_00497.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1427134 1427584 . - . gene_id "RvY_00497"; transcript_id "RvY_00497.1"; Scaffold001 rebuild exon 1427644 1427944 . - . gene_id "RvY_00497"; transcript_id "RvY_00497.1"; Scaffold001 rebuild exon 1430509 1431055 . - . gene_id "RvY_00497"; transcript_id "RvY_00497.1"; Scaffold001 rebuild transcript 1432218 1432562 . - . gene_id "RvY_00498"; transcript_id "RvY_00498.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1432218 1432562 . - . gene_id "RvY_00498"; transcript_id "RvY_00498.1"; Scaffold001 rebuild transcript 1434196 1441413 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1434196 1434689 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; Scaffold001 rebuild exon 1434934 1435261 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; Scaffold001 rebuild exon 1435469 1436623 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; Scaffold001 rebuild exon 1436850 1437835 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; Scaffold001 rebuild exon 1438010 1438376 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; Scaffold001 rebuild exon 1439926 1441413 . - . gene_id "RvY_00499"; transcript_id "RvY_00499.1"; Scaffold001 rebuild transcript 1441691 1442199 . - . gene_id "RvY_00500"; transcript_id "RvY_00500.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1441691 1441810 . - . gene_id "RvY_00500"; transcript_id "RvY_00500.1"; Scaffold001 rebuild exon 1441945 1442199 . - . gene_id "RvY_00500"; transcript_id "RvY_00500.1"; Scaffold001 rebuild transcript 1442285 1443979 . - . gene_id "RvY_00501"; transcript_id "RvY_00501.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1442285 1442359 . - . gene_id "RvY_00501"; transcript_id "RvY_00501.1"; Scaffold001 rebuild exon 1442451 1442712 . - . gene_id "RvY_00501"; transcript_id "RvY_00501.1"; Scaffold001 rebuild exon 1443548 1443688 . - . gene_id "RvY_00501"; transcript_id "RvY_00501.1"; Scaffold001 rebuild exon 1443705 1443979 . - . gene_id "RvY_00501"; transcript_id "RvY_00501.1"; Scaffold001 rebuild transcript 1444635 1445519 . - . gene_id "RvY_00502"; transcript_id "RvY_00502.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1444635 1445519 . - . gene_id "RvY_00502"; transcript_id "RvY_00502.1"; Scaffold001 rebuild transcript 1447493 1448652 . - . gene_id "RvY_00503"; transcript_id "RvY_00503.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain"; Scaffold001 rebuild exon 1447493 1447866 . - . gene_id "RvY_00503"; transcript_id "RvY_00503.1"; Scaffold001 rebuild exon 1448562 1448652 . - . gene_id "RvY_00503"; transcript_id "RvY_00503.1"; Scaffold001 rebuild transcript 1449540 1451569 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.1"; gene_name "MGAT2"; annotation "(1)alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143](2)hypothetical protein."; Pfam "[MGAT2] N-acetylglucosaminyltransferase II (MGAT2)"; CDD "N-acetylglucosaminyltransferase II (MGAT2). UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II (EC 2.4.1.143) (GnT II/MGAT2) is a Golgi resident enzyme that catalyses an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides. Mutations in the MGAT2 gene lead to congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors."; EC "(1)EC2.4.1.143"; KO "(1)K00736"; Scaffold001 rebuild exon 1449540 1450202 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.1"; Scaffold001 rebuild exon 1450545 1450742 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.1"; Scaffold001 rebuild exon 1450888 1451061 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.1"; Scaffold001 rebuild exon 1451297 1451569 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.1"; Scaffold001 rebuild transcript 1450443 1451569 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.2"; gene_name "MGAT2"; annotation "(1)alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143](2)hypothetical protein."; Pfam "[MGAT2] N-acetylglucosaminyltransferase II (MGAT2)"; CDD "N-acetylglucosaminyltransferase II (MGAT2). UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II (EC 2.4.1.143) (GnT II/MGAT2) is a Golgi resident enzyme that catalyses an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides. Mutations in the MGAT2 gene lead to congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors."; EC "(1)EC2.4.1.143"; KO "(1)K00736"; Scaffold001 rebuild exon 1450443 1450742 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.2"; Scaffold001 rebuild exon 1450888 1451061 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.2"; Scaffold001 rebuild exon 1451297 1451569 . - . gene_id "RvY_00504"; transcript_id "RvY_00504.2"; Scaffold001 rebuild transcript 1454488 1454778 . - . gene_id "RvY_00505"; transcript_id "RvY_00505.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1454488 1454778 . - . gene_id "RvY_00505"; transcript_id "RvY_00505.1"; Scaffold001 rebuild transcript 1455844 1461441 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; gene_name "DUF1777"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; CDD "Protein of unknown function (DUF1777). This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins."; Scaffold001 rebuild exon 1455844 1455964 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1456034 1456249 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1456365 1456582 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1456652 1456782 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1456925 1457264 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1457459 1457601 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1457949 1458195 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1458487 1461025 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1461227 1461306 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild exon 1461388 1461441 . + . gene_id "RvY_00506"; transcript_id "RvY_00506.1"; Scaffold001 rebuild transcript 1461764 1462937 . - . gene_id "RvY_00507"; transcript_id "RvY_00507.1"; annotation "hypothetical protein."; Pfam "[Dpy-30] Dpy-30 motif"; Scaffold001 rebuild exon 1461764 1462647 . - . gene_id "RvY_00507"; transcript_id "RvY_00507.1"; Scaffold001 rebuild exon 1462805 1462937 . - . gene_id "RvY_00507"; transcript_id "RvY_00507.1"; Scaffold001 rebuild transcript 1464454 1470381 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; annotation "hypothetical protein."; Pfam "[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain"; similar_genes "MILK2_HUMAN(e-value:1.7e-21;bit-score:100.0)"; Scaffold001 rebuild exon 1464454 1464499 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1465893 1466058 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1467041 1467089 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1467612 1467722 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1468284 1468317 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1469284 1469333 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1469476 1470264 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild exon 1470373 1470381 . + . gene_id "RvY_00508"; transcript_id "RvY_00508.1"; Scaffold001 rebuild transcript 1472179 1474764 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; gene_name "TC.AAT"; annotation "putative Amino-acid permease inda1"; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "amino acid permease (yeast)."; KO "K03293"; similar_genes "INDA1_TRIAT(e-value:5.9e-43;bit-score:172.0)"; Scaffold001 rebuild exon 1472179 1472948 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; Scaffold001 rebuild exon 1473207 1473821 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; Scaffold001 rebuild exon 1473931 1474042 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; Scaffold001 rebuild exon 1474157 1474258 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; Scaffold001 rebuild exon 1474384 1474569 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; Scaffold001 rebuild exon 1474705 1474764 . - . gene_id "RvY_00509"; transcript_id "RvY_00509.1"; Scaffold001 rebuild transcript 1479161 1479555 . + . gene_id "RvY_00510"; transcript_id "RvY_00510.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 1479161 1479349 . + . gene_id "RvY_00510"; transcript_id "RvY_00510.1"; Scaffold001 rebuild exon 1479355 1479555 . + . gene_id "RvY_00510"; transcript_id "RvY_00510.1"; Scaffold001 rebuild transcript 1479703 1482105 . + . gene_id "RvY_00511"; transcript_id "RvY_00511.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1479703 1479842 . + . gene_id "RvY_00511"; transcript_id "RvY_00511.1"; Scaffold001 rebuild exon 1479887 1480205 . + . gene_id "RvY_00511"; transcript_id "RvY_00511.1"; Scaffold001 rebuild exon 1480715 1480851 . + . gene_id "RvY_00511"; transcript_id "RvY_00511.1"; Scaffold001 rebuild exon 1482006 1482105 . + . gene_id "RvY_00511"; transcript_id "RvY_00511.1"; Scaffold001 rebuild transcript 1495006 1495278 . - . gene_id "RvY_00512"; transcript_id "RvY_00512.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1495006 1495278 . - . gene_id "RvY_00512"; transcript_id "RvY_00512.1"; Scaffold001 rebuild transcript 1497747 1500240 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "CL141_CAEEL(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 1497747 1498174 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.1"; Scaffold001 rebuild exon 1499117 1499872 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.1"; Scaffold001 rebuild exon 1500063 1500240 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.1"; Scaffold001 rebuild transcript 1497747 1500182 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.2"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "CL141_CAEEL(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 1497747 1498174 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.2"; Scaffold001 rebuild exon 1499117 1499872 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.2"; Scaffold001 rebuild exon 1500065 1500182 . - . gene_id "RvY_00513"; transcript_id "RvY_00513.2"; Scaffold001 rebuild transcript 1502326 1503375 . + . gene_id "RvY_00514"; transcript_id "RvY_00514.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 1502326 1503375 . + . gene_id "RvY_00514"; transcript_id "RvY_00514.1"; Scaffold001 rebuild transcript 1504379 1506479 . + . gene_id "RvY_00515"; transcript_id "RvY_00515.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1504379 1504414 . + . gene_id "RvY_00515"; transcript_id "RvY_00515.1"; Scaffold001 rebuild exon 1504507 1504642 . + . gene_id "RvY_00515"; transcript_id "RvY_00515.1"; Scaffold001 rebuild exon 1504716 1505018 . + . gene_id "RvY_00515"; transcript_id "RvY_00515.1"; Scaffold001 rebuild exon 1505098 1506479 . + . gene_id "RvY_00515"; transcript_id "RvY_00515.1"; Scaffold001 rebuild transcript 1506741 1513522 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1506741 1507692 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild exon 1508462 1508963 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild exon 1509540 1509801 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild exon 1509917 1510157 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild exon 1511218 1512375 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild exon 1512530 1513398 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild exon 1513475 1513522 . + . gene_id "RvY_00516"; transcript_id "RvY_00516.1"; Scaffold001 rebuild transcript 1513612 1513923 . - . gene_id "RvY_00517"; transcript_id "RvY_00517.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1513612 1513923 . - . gene_id "RvY_00517"; transcript_id "RvY_00517.1"; Scaffold001 rebuild transcript 1513939 1514608 . - . gene_id "RvY_00518"; transcript_id "RvY_00518.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1513939 1514141 . - . gene_id "RvY_00518"; transcript_id "RvY_00518.1"; Scaffold001 rebuild exon 1514164 1514608 . - . gene_id "RvY_00518"; transcript_id "RvY_00518.1"; Scaffold001 rebuild transcript 1515003 1517726 . + . gene_id "RvY_00519"; transcript_id "RvY_00519.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1515003 1517067 . + . gene_id "RvY_00519"; transcript_id "RvY_00519.1"; Scaffold001 rebuild exon 1517173 1517726 . + . gene_id "RvY_00519"; transcript_id "RvY_00519.1"; Scaffold001 rebuild transcript 1518351 1519374 . - . gene_id "RvY_00520"; transcript_id "RvY_00520.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1518351 1518373 . - . gene_id "RvY_00520"; transcript_id "RvY_00520.1"; Scaffold001 rebuild exon 1518708 1519374 . - . gene_id "RvY_00520"; transcript_id "RvY_00520.1"; Scaffold001 rebuild transcript 1518625 1519014 . - . gene_id "RvY_00520"; transcript_id "RvY_00520.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1518625 1519014 . - . gene_id "RvY_00520"; transcript_id "RvY_00520.2"; Scaffold001 rebuild transcript 1519416 1520781 . - . gene_id "RvY_00521"; transcript_id "RvY_00521.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1519416 1519480 . - . gene_id "RvY_00521"; transcript_id "RvY_00521.1"; Scaffold001 rebuild exon 1520046 1520781 . - . gene_id "RvY_00521"; transcript_id "RvY_00521.1"; Scaffold001 rebuild transcript 1526972 1528340 . - . gene_id "RvY_00522"; transcript_id "RvY_00522.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1526972 1527154 . - . gene_id "RvY_00522"; transcript_id "RvY_00522.1"; Scaffold001 rebuild exon 1527283 1527438 . - . gene_id "RvY_00522"; transcript_id "RvY_00522.1"; Scaffold001 rebuild exon 1527828 1528340 . - . gene_id "RvY_00522"; transcript_id "RvY_00522.1"; Scaffold001 rebuild transcript 1532086 1532979 . - . gene_id "RvY_00523"; transcript_id "RvY_00523.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1532086 1532979 . - . gene_id "RvY_00523"; transcript_id "RvY_00523.1"; Scaffold001 rebuild transcript 1533887 1534054 . - . gene_id "RvY_00524"; transcript_id "RvY_00524.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1533887 1534054 . - . gene_id "RvY_00524"; transcript_id "RvY_00524.1"; Scaffold001 rebuild transcript 1536525 1537694 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; gene_name "GST_N_Sigma_like"; annotation "hypothetical protein."; Pfam "[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold001 rebuild exon 1536525 1536657 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; Scaffold001 rebuild exon 1536899 1536994 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; Scaffold001 rebuild exon 1537071 1537186 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; Scaffold001 rebuild exon 1537243 1537353 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; Scaffold001 rebuild exon 1537443 1537478 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; Scaffold001 rebuild exon 1537557 1537694 . + . gene_id "RvY_00525"; transcript_id "RvY_00525.1"; Scaffold001 rebuild transcript 1538292 1539905 . + . gene_id "RvY_00526"; transcript_id "RvY_00526.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold001 rebuild exon 1538292 1538596 . + . gene_id "RvY_00526"; transcript_id "RvY_00526.1"; Scaffold001 rebuild exon 1538679 1539168 . + . gene_id "RvY_00526"; transcript_id "RvY_00526.1"; Scaffold001 rebuild exon 1539345 1539905 . + . gene_id "RvY_00526"; transcript_id "RvY_00526.1"; Scaffold001 rebuild transcript 1541029 1541436 . - . gene_id "RvY_00527"; transcript_id "RvY_00527.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1541029 1541436 . - . gene_id "RvY_00527"; transcript_id "RvY_00527.1"; Scaffold001 rebuild transcript 1541636 1544381 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1541636 1541885 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; Scaffold001 rebuild exon 1541970 1542448 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; Scaffold001 rebuild exon 1542506 1542706 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; Scaffold001 rebuild exon 1543019 1543609 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; Scaffold001 rebuild exon 1543773 1543998 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; Scaffold001 rebuild exon 1544296 1544381 . + . gene_id "RvY_00528"; transcript_id "RvY_00528.1"; Scaffold001 rebuild transcript 1544540 1544893 . - . gene_id "RvY_00529"; transcript_id "RvY_00529.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1544540 1544893 . - . gene_id "RvY_00529"; transcript_id "RvY_00529.1"; Scaffold001 rebuild transcript 1546227 1549079 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; gene_name "SPT2"; annotation "hypothetical protein."; Pfam "[SPT2] SPT2 chromatin protein"; CDD "SPT2 chromatin protein. This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation PUBMED:15563464."; Scaffold001 rebuild exon 1546227 1546286 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild exon 1546402 1546585 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild exon 1546652 1547481 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild exon 1547627 1547987 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild exon 1548080 1548224 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild exon 1548286 1548369 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild exon 1548971 1549079 . + . gene_id "RvY_00530"; transcript_id "RvY_00530.1"; Scaffold001 rebuild transcript 1550112 1550983 . + . gene_id "RvY_00531"; transcript_id "RvY_00531.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1550112 1550252 . + . gene_id "RvY_00531"; transcript_id "RvY_00531.1"; Scaffold001 rebuild exon 1550387 1550983 . + . gene_id "RvY_00531"; transcript_id "RvY_00531.1"; Scaffold001 rebuild transcript 1549874 1550400 . + . gene_id "RvY_00531"; transcript_id "RvY_00531.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1549874 1550252 . + . gene_id "RvY_00531"; transcript_id "RvY_00531.2"; Scaffold001 rebuild exon 1550387 1550400 . + . gene_id "RvY_00531"; transcript_id "RvY_00531.2"; Scaffold001 rebuild transcript 1551990 1552665 . + . gene_id "RvY_00532"; transcript_id "RvY_00532.1"; gene_name "pp-GalNAc-T"; annotation "hypothetical protein."; Pfam "[Glycos_transf_2] Glycosyl transferase family 2"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; similar_genes "GALT9_DROME(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 1551990 1552080 . + . gene_id "RvY_00532"; transcript_id "RvY_00532.1"; Scaffold001 rebuild exon 1552206 1552383 . + . gene_id "RvY_00532"; transcript_id "RvY_00532.1"; Scaffold001 rebuild exon 1552458 1552665 . + . gene_id "RvY_00532"; transcript_id "RvY_00532.1"; Scaffold001 rebuild transcript 1552804 1553947 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; gene_name "pp-GalNAc-T"; annotation "hypothetical protein."; Pfam "(2)[Glyco_transf_7C] N-terminal domain of galactosyltransferase|(2)[Glyco_tranf_2_2] Glycosyltransferase like family 2|(1,3)[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "(1,2,4)EC2.4.1.41"; similar_genes "(1,4)GALT1_DROME(e-value:2.0e-09;bit-score:60.0)(2)GALT1_DROME(e-value:4.9e-19;bit-score:92.0)"; Scaffold001 rebuild exon 1552804 1552845 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; Scaffold001 rebuild exon 1552935 1552989 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; Scaffold001 rebuild exon 1553053 1553171 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; Scaffold001 rebuild exon 1553248 1553502 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; Scaffold001 rebuild exon 1553585 1553737 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; Scaffold001 rebuild exon 1553816 1553947 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.1"; Scaffold001 rebuild transcript 1552702 1553405 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.2"; gene_name "pp-GalNAc-T"; annotation "hypothetical protein."; Pfam "(2)[Glyco_transf_7C] N-terminal domain of galactosyltransferase|(2)[Glyco_tranf_2_2] Glycosyltransferase like family 2|(1,3)[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "(1,2,4)EC2.4.1.41"; similar_genes "(1,4)GALT1_DROME(e-value:2.0e-09;bit-score:60.0)(2)GALT1_DROME(e-value:4.9e-19;bit-score:92.0)"; Scaffold001 rebuild exon 1552702 1552845 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.2"; Scaffold001 rebuild exon 1552935 1552989 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.2"; Scaffold001 rebuild exon 1553053 1553405 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.2"; Scaffold001 rebuild transcript 1553191 1553770 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.3"; gene_name "pp-GalNAc-T"; annotation "hypothetical protein."; Pfam "(2)[Glyco_transf_7C] N-terminal domain of galactosyltransferase|(2)[Glyco_tranf_2_2] Glycosyltransferase like family 2|(1,3)[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "(1,2,4)EC2.4.1.41"; similar_genes "(1,4)GALT1_DROME(e-value:2.0e-09;bit-score:60.0)(2)GALT1_DROME(e-value:4.9e-19;bit-score:92.0)"; Scaffold001 rebuild exon 1553191 1553502 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.3"; Scaffold001 rebuild exon 1553585 1553770 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.3"; Scaffold001 rebuild transcript 1552804 1553405 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.4"; gene_name "pp-GalNAc-T"; annotation "hypothetical protein."; Pfam "(2)[Glyco_transf_7C] N-terminal domain of galactosyltransferase|(2)[Glyco_tranf_2_2] Glycosyltransferase like family 2|(1,3)[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "(1,2,4)EC2.4.1.41"; similar_genes "(1,4)GALT1_DROME(e-value:2.0e-09;bit-score:60.0)(2)GALT1_DROME(e-value:4.9e-19;bit-score:92.0)"; Scaffold001 rebuild exon 1552804 1552845 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.4"; Scaffold001 rebuild exon 1552935 1552989 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.4"; Scaffold001 rebuild exon 1553053 1553405 . + . gene_id "RvY_00533"; transcript_id "RvY_00533.4"; Scaffold001 rebuild transcript 1554314 1557015 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; gene_name "pp-GalNAc-T"; annotation "hypothetical protein."; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; similar_genes "GALT5_DROME(e-value:8.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 1554314 1554780 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1554861 1555027 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1555119 1555213 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1555287 1555366 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1555433 1555645 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1555715 1555806 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1555870 1555950 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1556038 1556159 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1556233 1556367 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1556441 1556572 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1556635 1556781 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild exon 1556842 1557015 . + . gene_id "RvY_00534"; transcript_id "RvY_00534.1"; Scaffold001 rebuild transcript 1557596 1558485 . - . gene_id "RvY_00535"; transcript_id "RvY_00535.1"; annotation "hypothetical protein."; Pfam "[UPF0193] Uncharacterised protein family (UPF0193)"; Scaffold001 rebuild exon 1557596 1557712 . - . gene_id "RvY_00535"; transcript_id "RvY_00535.1"; Scaffold001 rebuild exon 1557803 1557903 . - . gene_id "RvY_00535"; transcript_id "RvY_00535.1"; Scaffold001 rebuild exon 1557991 1558128 . - . gene_id "RvY_00535"; transcript_id "RvY_00535.1"; Scaffold001 rebuild exon 1558215 1558485 . - . gene_id "RvY_00535"; transcript_id "RvY_00535.1"; Scaffold001 rebuild transcript 1558533 1558781 . - . gene_id "RvY_00536"; transcript_id "RvY_00536.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1558533 1558606 . - . gene_id "RvY_00536"; transcript_id "RvY_00536.1"; Scaffold001 rebuild exon 1558685 1558781 . - . gene_id "RvY_00536"; transcript_id "RvY_00536.1"; Scaffold001 rebuild transcript 1559286 1559545 . - . gene_id "RvY_00537"; transcript_id "RvY_00537.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1559286 1559360 . - . gene_id "RvY_00537"; transcript_id "RvY_00537.1"; Scaffold001 rebuild exon 1559459 1559545 . - . gene_id "RvY_00537"; transcript_id "RvY_00537.1"; Scaffold001 rebuild transcript 1559573 1559987 . - . gene_id "RvY_00538"; transcript_id "RvY_00538.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1559573 1559742 . - . gene_id "RvY_00538"; transcript_id "RvY_00538.1"; Scaffold001 rebuild exon 1559870 1559987 . - . gene_id "RvY_00538"; transcript_id "RvY_00538.1"; Scaffold001 rebuild transcript 1560913 1561509 . + . gene_id "RvY_00539"; transcript_id "RvY_00539.1"; gene_name "DFFB"; annotation "DNA fragmentation factor, 40 kD, beta subunit [EC:3.-.-.-]"; Pfam "[DFF40] DNA fragmentation factor 40 kDa"; EC "EC3.-.-.-"; KO "K02311"; Scaffold001 rebuild exon 1560913 1561509 . + . gene_id "RvY_00539"; transcript_id "RvY_00539.1"; Scaffold001 rebuild transcript 1561714 1568829 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; gene_name "STK25"; annotation "Serine/threonine-protein kinase 24"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization."; EC "EC2.7.11.1|EC2.7.11.22"; KO "K08839"; similar_genes "STK24_MOUSE(e-value:3.0e-129;bit-score:458.0)"; Scaffold001 rebuild exon 1561714 1562154 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1562483 1562807 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1563613 1563758 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1563927 1564112 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1564306 1564334 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1564407 1564535 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1566540 1566705 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1567125 1567220 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1567302 1567430 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild exon 1567627 1568829 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.1"; Scaffold001 rebuild transcript 1561714 1575590 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; gene_name "STK25"; annotation "Serine/threonine-protein kinase 24"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization."; EC "EC2.7.11.1|EC2.7.11.22"; KO "K08839"; similar_genes "STK24_MOUSE(e-value:3.0e-129;bit-score:458.0)"; Scaffold001 rebuild exon 1561714 1562154 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1562483 1562807 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1563613 1563758 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1563927 1564112 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1564306 1564334 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1564407 1564535 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1566540 1566705 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1567125 1567220 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1567302 1567430 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild exon 1575573 1575590 . - . gene_id "RvY_00540"; transcript_id "RvY_00540.2"; Scaffold001 rebuild transcript 1569811 1570938 . + . gene_id "RvY_00541"; transcript_id "RvY_00541.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1569811 1570058 . + . gene_id "RvY_00541"; transcript_id "RvY_00541.1"; Scaffold001 rebuild exon 1570770 1570938 . + . gene_id "RvY_00541"; transcript_id "RvY_00541.1"; Scaffold001 rebuild transcript 1575020 1575397 . + . gene_id "RvY_00542"; transcript_id "RvY_00542.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1575020 1575397 . + . gene_id "RvY_00542"; transcript_id "RvY_00542.1"; Scaffold001 rebuild transcript 1576572 1577219 . - . gene_id "RvY_00543"; transcript_id "RvY_00543.1"; gene_name "MAFF_G_K"; annotation "transcription factor MAFF/G/K"; Pfam "[bZIP_Maf] bZIP Maf transcription factor"; KO "K09037"; similar_genes "MAF_BOVIN(e-value:5.4e-14;bit-score:76.0)"; Scaffold001 rebuild exon 1576572 1576636 . - . gene_id "RvY_00543"; transcript_id "RvY_00543.1"; Scaffold001 rebuild exon 1576703 1576811 . - . gene_id "RvY_00543"; transcript_id "RvY_00543.1"; Scaffold001 rebuild exon 1576946 1577159 . - . gene_id "RvY_00543"; transcript_id "RvY_00543.1"; Scaffold001 rebuild exon 1577218 1577219 . - . gene_id "RvY_00543"; transcript_id "RvY_00543.1"; Scaffold001 rebuild transcript 1577796 1579994 . + . gene_id "RvY_00544"; transcript_id "RvY_00544.1"; gene_name "APC8"; annotation "anaphase-promoting complex subunit 8"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; KO "K03355"; Scaffold001 rebuild exon 1577796 1578305 . + . gene_id "RvY_00544"; transcript_id "RvY_00544.1"; Scaffold001 rebuild exon 1578372 1578860 . + . gene_id "RvY_00544"; transcript_id "RvY_00544.1"; Scaffold001 rebuild exon 1579119 1579438 . + . gene_id "RvY_00544"; transcript_id "RvY_00544.1"; Scaffold001 rebuild exon 1579505 1579994 . + . gene_id "RvY_00544"; transcript_id "RvY_00544.1"; Scaffold001 rebuild transcript 1580475 1581805 . - . gene_id "RvY_00545"; transcript_id "RvY_00545.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1580475 1580714 . - . gene_id "RvY_00545"; transcript_id "RvY_00545.1"; Scaffold001 rebuild exon 1580805 1581362 . - . gene_id "RvY_00545"; transcript_id "RvY_00545.1"; Scaffold001 rebuild exon 1581437 1581566 . - . gene_id "RvY_00545"; transcript_id "RvY_00545.1"; Scaffold001 rebuild exon 1581693 1581805 . - . gene_id "RvY_00545"; transcript_id "RvY_00545.1"; Scaffold001 rebuild transcript 1583427 1583615 . + . gene_id "RvY_00546"; transcript_id "RvY_00546.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1583427 1583615 . + . gene_id "RvY_00546"; transcript_id "RvY_00546.1"; Scaffold001 rebuild transcript 1584784 1585044 . - . gene_id "RvY_00547"; transcript_id "RvY_00547.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1584784 1585044 . - . gene_id "RvY_00547"; transcript_id "RvY_00547.1"; Scaffold001 rebuild transcript 1587027 1587455 . + . gene_id "RvY_00548"; transcript_id "RvY_00548.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1587027 1587455 . + . gene_id "RvY_00548"; transcript_id "RvY_00548.1"; Scaffold001 rebuild transcript 1589061 1592141 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; annotation "hypothetical protein."; Pfam "[RAP]"; Scaffold001 rebuild exon 1589061 1589115 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; Scaffold001 rebuild exon 1589181 1590337 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; Scaffold001 rebuild exon 1590521 1590824 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; Scaffold001 rebuild exon 1591027 1591290 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; Scaffold001 rebuild exon 1591408 1591513 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; Scaffold001 rebuild exon 1591835 1592141 . + . gene_id "RvY_00549"; transcript_id "RvY_00549.1"; Scaffold001 rebuild transcript 1592517 1593619 . - . gene_id "RvY_00550"; transcript_id "RvY_00550.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1592517 1592718 . - . gene_id "RvY_00550"; transcript_id "RvY_00550.1"; Scaffold001 rebuild exon 1592796 1593619 . - . gene_id "RvY_00550"; transcript_id "RvY_00550.1"; Scaffold001 rebuild transcript 1594679 1594954 . + . gene_id "RvY_00551"; transcript_id "RvY_00551.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1594679 1594954 . + . gene_id "RvY_00551"; transcript_id "RvY_00551.1"; Scaffold001 rebuild transcript 1597471 1599225 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.1"; annotation "hypothetical protein."; Pfam "[zf-UBR] Putative zinc finger in N-recognin (UBR box)"; EC "(1,3)EC6.3.2.-"; similar_genes "(1)UBR7_HUMAN(e-value:8.8e-08;bit-score:55.0)(3)UBR7_MOUSE(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 1597471 1597775 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.1"; Scaffold001 rebuild exon 1597840 1597912 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.1"; Scaffold001 rebuild exon 1598002 1599225 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.1"; Scaffold001 rebuild transcript 1596679 1598274 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.2"; annotation "hypothetical protein."; Pfam "[zf-UBR] Putative zinc finger in N-recognin (UBR box)"; EC "(1,3)EC6.3.2.-"; similar_genes "(1)UBR7_HUMAN(e-value:8.8e-08;bit-score:55.0)(3)UBR7_MOUSE(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 1596679 1597029 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.2"; Scaffold001 rebuild exon 1597146 1597439 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.2"; Scaffold001 rebuild exon 1598002 1598274 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.2"; Scaffold001 rebuild transcript 1596679 1597858 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.3"; annotation "hypothetical protein."; Pfam "[zf-UBR] Putative zinc finger in N-recognin (UBR box)"; EC "(1,3)EC6.3.2.-"; similar_genes "(1)UBR7_HUMAN(e-value:8.8e-08;bit-score:55.0)(3)UBR7_MOUSE(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 1596679 1597029 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.3"; Scaffold001 rebuild exon 1597146 1597439 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.3"; Scaffold001 rebuild exon 1597504 1597603 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.3"; Scaffold001 rebuild exon 1597715 1597775 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.3"; Scaffold001 rebuild exon 1597840 1597858 . - . gene_id "RvY_00552"; transcript_id "RvY_00552.3"; Scaffold001 rebuild transcript 1599756 1601477 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1599756 1600004 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.1"; Scaffold001 rebuild exon 1600136 1600331 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.1"; Scaffold001 rebuild exon 1600421 1600875 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.1"; Scaffold001 rebuild exon 1601196 1601477 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.1"; Scaffold001 rebuild transcript 1600082 1601477 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1600082 1600331 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.2"; Scaffold001 rebuild exon 1600421 1600875 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.2"; Scaffold001 rebuild exon 1601196 1601477 . - . gene_id "RvY_00553"; transcript_id "RvY_00553.2"; Scaffold001 rebuild transcript 1602356 1605637 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 1602356 1602491 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1602721 1602753 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1602857 1602898 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1602974 1603275 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1603571 1603818 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1603915 1603954 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1604303 1604395 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1604590 1604643 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1604744 1604959 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild exon 1605416 1605637 . - . gene_id "RvY_00554"; transcript_id "RvY_00554.1"; Scaffold001 rebuild transcript 1605636 1606808 . + . gene_id "RvY_00555"; transcript_id "RvY_00555.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1605636 1605703 . + . gene_id "RvY_00555"; transcript_id "RvY_00555.1"; Scaffold001 rebuild exon 1606322 1606808 . + . gene_id "RvY_00555"; transcript_id "RvY_00555.1"; Scaffold001 rebuild transcript 1607268 1609441 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1607268 1607600 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1607744 1607831 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1607904 1608157 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1608413 1608477 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1608569 1608709 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1608875 1608951 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1609058 1609188 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild exon 1609286 1609441 . - . gene_id "RvY_00556"; transcript_id "RvY_00556.1"; Scaffold001 rebuild transcript 1609581 1611286 . + . gene_id "RvY_00557"; transcript_id "RvY_00557.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1609581 1609709 . + . gene_id "RvY_00557"; transcript_id "RvY_00557.1"; Scaffold001 rebuild exon 1610465 1611286 . + . gene_id "RvY_00557"; transcript_id "RvY_00557.1"; Scaffold001 rebuild transcript 1612396 1613060 . - . gene_id "RvY_00558"; transcript_id "RvY_00558.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1612396 1612515 . - . gene_id "RvY_00558"; transcript_id "RvY_00558.1"; Scaffold001 rebuild exon 1612588 1612716 . - . gene_id "RvY_00558"; transcript_id "RvY_00558.1"; Scaffold001 rebuild exon 1612929 1613060 . - . gene_id "RvY_00558"; transcript_id "RvY_00558.1"; Scaffold001 rebuild transcript 1613241 1614001 . + . gene_id "RvY_00559"; transcript_id "RvY_00559.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1613241 1613311 . + . gene_id "RvY_00559"; transcript_id "RvY_00559.1"; Scaffold001 rebuild exon 1613875 1614001 . + . gene_id "RvY_00559"; transcript_id "RvY_00559.1"; Scaffold001 rebuild transcript 1614213 1614617 . - . gene_id "RvY_00560"; transcript_id "RvY_00560.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1614213 1614617 . - . gene_id "RvY_00560"; transcript_id "RvY_00560.1"; Scaffold001 rebuild transcript 1615017 1616626 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.1"; gene_name "GT8_Glycogenin"; annotation "putative Glycogenin-1"; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases."; EC "EC2.4.1.186"; similar_genes "GLYG_RABIT(e-value:9.8e-39;bit-score:158.0)"; Scaffold001 rebuild exon 1615017 1615363 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.1"; Scaffold001 rebuild exon 1615586 1615926 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.1"; Scaffold001 rebuild exon 1615993 1616119 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.1"; Scaffold001 rebuild exon 1616222 1616408 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.1"; Scaffold001 rebuild exon 1616474 1616626 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.1"; Scaffold001 rebuild transcript 1615017 1616495 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.2"; gene_name "GT8_Glycogenin"; annotation "putative Glycogenin-1"; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases."; EC "EC2.4.1.186"; similar_genes "GLYG_RABIT(e-value:9.8e-39;bit-score:158.0)"; Scaffold001 rebuild exon 1615017 1615363 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.2"; Scaffold001 rebuild exon 1615586 1615926 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.2"; Scaffold001 rebuild exon 1615993 1616119 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.2"; Scaffold001 rebuild exon 1616222 1616410 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.2"; Scaffold001 rebuild exon 1616474 1616495 . + . gene_id "RvY_00561"; transcript_id "RvY_00561.2"; Scaffold001 rebuild transcript 1617168 1619195 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold001 rebuild exon 1617168 1617580 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild exon 1617763 1617951 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild exon 1618024 1618098 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild exon 1618195 1618729 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild exon 1618898 1618966 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild exon 1619046 1619093 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild exon 1619163 1619195 . - . gene_id "RvY_00562"; transcript_id "RvY_00562.1"; Scaffold001 rebuild transcript 1621513 1624529 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; annotation "hypothetical protein."; Pfam "[Nucleopor_Nup85] Nup85 Nucleoporin"; KO "K14304"; Scaffold001 rebuild exon 1621513 1621560 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1621627 1621677 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1621736 1621983 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1622271 1622380 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1622472 1622687 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1622744 1622950 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1623026 1623129 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1623213 1623315 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1623387 1623532 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1623595 1623701 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1623766 1623921 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1623983 1624170 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1624267 1624336 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild exon 1624400 1624529 . - . gene_id "RvY_00563"; transcript_id "RvY_00563.1"; Scaffold001 rebuild transcript 1625062 1625894 . - . gene_id "RvY_00564"; transcript_id "RvY_00564.1"; gene_name "RP-S27Ae"; annotation "putative Ubiquitin"; Pfam "[ubiquitin] Ubiquitin family|[Ribosomal_S27] Ribosomal protein S27a|[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)"; KO "K02977"; similar_genes "UBIQ_MACFA(e-value:6.4e-36;bit-score:148.0)"; Scaffold001 rebuild exon 1625062 1625244 . - . gene_id "RvY_00564"; transcript_id "RvY_00564.1"; Scaffold001 rebuild exon 1625318 1625535 . - . gene_id "RvY_00564"; transcript_id "RvY_00564.1"; Scaffold001 rebuild exon 1625731 1625785 . - . gene_id "RvY_00564"; transcript_id "RvY_00564.1"; Scaffold001 rebuild exon 1625847 1625894 . - . gene_id "RvY_00564"; transcript_id "RvY_00564.1"; Scaffold001 rebuild transcript 1626379 1627406 . - . gene_id "RvY_00565"; transcript_id "RvY_00565.1"; gene_name "UbiG"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain"; CDD "ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase."; Scaffold001 rebuild exon 1626379 1627284 . - . gene_id "RvY_00565"; transcript_id "RvY_00565.1"; Scaffold001 rebuild exon 1627356 1627406 . - . gene_id "RvY_00565"; transcript_id "RvY_00565.1"; Scaffold001 rebuild transcript 1630145 1631552 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; gene_name "COX11"; annotation "Cytochrome c oxidase assembly protein COX11, mitochondrial"; Pfam "[CtaG_Cox11] Cytochrome c oxidase assembly protein CtaG/Cox11"; CDD "cytochrome c oxidase assembly protein -1; Provisional"; KO "K02258"; similar_genes "COX11_HUMAN(e-value:8.3e-53;bit-score:204.0)"; Scaffold001 rebuild exon 1630145 1630189 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; Scaffold001 rebuild exon 1630257 1630361 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; Scaffold001 rebuild exon 1630434 1630661 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; Scaffold001 rebuild exon 1630723 1630881 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; Scaffold001 rebuild exon 1630944 1631111 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; Scaffold001 rebuild exon 1631352 1631552 . + . gene_id "RvY_00566"; transcript_id "RvY_00566.1"; Scaffold001 rebuild transcript 1631890 1632090 . - . gene_id "RvY_00567"; transcript_id "RvY_00567.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1631890 1632090 . - . gene_id "RvY_00567"; transcript_id "RvY_00567.1"; Scaffold001 rebuild transcript 1632895 1636221 . + . gene_id "RvY_00568"; transcript_id "RvY_00568.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain"; Scaffold001 rebuild exon 1632895 1633455 . + . gene_id "RvY_00568"; transcript_id "RvY_00568.1"; Scaffold001 rebuild exon 1634902 1635631 . + . gene_id "RvY_00568"; transcript_id "RvY_00568.1"; Scaffold001 rebuild exon 1635911 1636221 . + . gene_id "RvY_00568"; transcript_id "RvY_00568.1"; Scaffold001 rebuild transcript 1639439 1641635 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1639439 1639528 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1639606 1639827 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1639898 1640196 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1640292 1640429 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1640532 1640683 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1640766 1640929 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1641012 1641140 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1641199 1641419 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild exon 1641521 1641635 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.1"; Scaffold001 rebuild transcript 1638416 1641152 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1638416 1638444 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1639342 1639528 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1639606 1639827 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1639898 1640196 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1640292 1640429 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1640532 1640683 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1640766 1640929 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild exon 1641012 1641152 . + . gene_id "RvY_00569"; transcript_id "RvY_00569.2"; Scaffold001 rebuild transcript 1641853 1643096 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1641853 1642404 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.1"; Scaffold001 rebuild exon 1642525 1642659 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.1"; Scaffold001 rebuild exon 1642724 1642824 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.1"; Scaffold001 rebuild exon 1642918 1643001 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.1"; Scaffold001 rebuild exon 1643069 1643096 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.1"; Scaffold001 rebuild transcript 1641853 1642813 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1641853 1642404 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.2"; Scaffold001 rebuild exon 1642525 1642659 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.2"; Scaffold001 rebuild exon 1642724 1642813 . - . gene_id "RvY_00570"; transcript_id "RvY_00570.2"; Scaffold001 rebuild transcript 1643486 1644225 . - . gene_id "RvY_00571"; transcript_id "RvY_00571.1"; annotation "(1)putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72(2)hypothetical protein."; Pfam "[Ssu72] Ssu72-like protein"; EC "(1)EC3.1.3.16"; KO "(1)K15544"; similar_genes "(1)SSU72_XENLA(e-value:8.6e-40;bit-score:161.0)"; Scaffold001 rebuild exon 1643486 1643557 . - . gene_id "RvY_00571"; transcript_id "RvY_00571.1"; Scaffold001 rebuild exon 1643701 1644225 . - . gene_id "RvY_00571"; transcript_id "RvY_00571.1"; Scaffold001 rebuild transcript 1644095 1644481 . - . gene_id "RvY_00571"; transcript_id "RvY_00571.2"; annotation "(1)putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72(2)hypothetical protein."; Pfam "[Ssu72] Ssu72-like protein"; EC "(1)EC3.1.3.16"; KO "(1)K15544"; similar_genes "(1)SSU72_XENLA(e-value:8.6e-40;bit-score:161.0)"; Scaffold001 rebuild exon 1644095 1644481 . - . gene_id "RvY_00571"; transcript_id "RvY_00571.2"; Scaffold001 rebuild transcript 1645090 1650822 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; gene_name "glmS"; annotation "Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2"; Pfam "[GATase_7] Glutamine amidotransferase domain|[SIS]|[GATase_2] Glutamine amidotransferases class-II|[GATase_4] Glutamine amidotransferases class-II|[GATase_6] Glutamine amidotransferase domain"; CDD "glucosamine--fructose-6-phosphate aminotransferase; Reviewed"; EC "EC2.6.1.16"; KO "K00820"; similar_genes "GFPT2_MOUSE(e-value:2.0e-164;bit-score:575.0)"; Scaffold001 rebuild exon 1645090 1645096 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1646240 1646575 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1646950 1647199 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1647464 1647759 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1648037 1648329 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1648421 1648541 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1648748 1649182 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1650058 1650191 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1650335 1650431 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild exon 1650713 1650822 . + . gene_id "RvY_00572"; transcript_id "RvY_00572.1"; Scaffold001 rebuild transcript 1651509 1651820 . - . gene_id "RvY_00573"; transcript_id "RvY_00573.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1651509 1651820 . - . gene_id "RvY_00573"; transcript_id "RvY_00573.1"; Scaffold001 rebuild transcript 1651881 1653707 . - . gene_id "RvY_00574"; transcript_id "RvY_00574.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1651881 1652416 . - . gene_id "RvY_00574"; transcript_id "RvY_00574.1"; Scaffold001 rebuild exon 1652655 1652886 . - . gene_id "RvY_00574"; transcript_id "RvY_00574.1"; Scaffold001 rebuild exon 1652978 1653084 . - . gene_id "RvY_00574"; transcript_id "RvY_00574.1"; Scaffold001 rebuild exon 1653683 1653707 . - . gene_id "RvY_00574"; transcript_id "RvY_00574.1"; Scaffold001 rebuild transcript 1656414 1657079 . + . gene_id "RvY_00575"; transcript_id "RvY_00575.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1656414 1656497 . + . gene_id "RvY_00575"; transcript_id "RvY_00575.1"; Scaffold001 rebuild exon 1656790 1656907 . + . gene_id "RvY_00575"; transcript_id "RvY_00575.1"; Scaffold001 rebuild exon 1656979 1657079 . + . gene_id "RvY_00575"; transcript_id "RvY_00575.1"; Scaffold001 rebuild transcript 1657350 1659010 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; gene_name "PGTB1"; annotation "geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59]"; Pfam "[Prenyltrans_2] Prenyltransferase-like|[Prenyltrans] Prenyltransferase and squalene oxidase repeat"; CDD "Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, ""CAAX"" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity."; EC "EC2.5.1.59"; KO "K11713"; similar_genes "PGTB1_DICDI(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 1657350 1657534 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; Scaffold001 rebuild exon 1657628 1657736 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; Scaffold001 rebuild exon 1657796 1658107 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; Scaffold001 rebuild exon 1658185 1658362 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; Scaffold001 rebuild exon 1658508 1658837 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; Scaffold001 rebuild exon 1658898 1659010 . - . gene_id "RvY_00576"; transcript_id "RvY_00576.1"; Scaffold001 rebuild transcript 1659447 1660317 . + . gene_id "RvY_00577"; transcript_id "RvY_00577.1"; gene_name "SNRPA"; annotation "U1 small nuclear ribonucleoprotein A"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 1659447 1659831 . + . gene_id "RvY_00577"; transcript_id "RvY_00577.1"; Scaffold001 rebuild exon 1660013 1660317 . + . gene_id "RvY_00577"; transcript_id "RvY_00577.1"; Scaffold001 rebuild transcript 1660720 1661990 . - . gene_id "RvY_00578"; transcript_id "RvY_00578.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1660720 1661101 . - . gene_id "RvY_00578"; transcript_id "RvY_00578.1"; Scaffold001 rebuild exon 1661443 1661851 . - . gene_id "RvY_00578"; transcript_id "RvY_00578.1"; Scaffold001 rebuild exon 1661912 1661990 . - . gene_id "RvY_00578"; transcript_id "RvY_00578.1"; Scaffold001 rebuild transcript 1662289 1663549 . - . gene_id "RvY_00579"; transcript_id "RvY_00579.1"; gene_name "RP-S2e"; annotation "40S ribosomal protein S2"; Pfam "[Ribosomal_S5_C] Ribosomal protein S5, C-terminal domain|[Ribosomal_S5] Ribosomal protein S5, N-terminal domain"; CDD "40S ribosomal protein S2; Provisional"; KO "K02981"; similar_genes "RS2_DROME(e-value:6.4e-106;bit-score:381.0)"; Scaffold001 rebuild exon 1662289 1662431 . - . gene_id "RvY_00579"; transcript_id "RvY_00579.1"; Scaffold001 rebuild exon 1662511 1662670 . - . gene_id "RvY_00579"; transcript_id "RvY_00579.1"; Scaffold001 rebuild exon 1662766 1662939 . - . gene_id "RvY_00579"; transcript_id "RvY_00579.1"; Scaffold001 rebuild exon 1663106 1663213 . - . gene_id "RvY_00579"; transcript_id "RvY_00579.1"; Scaffold001 rebuild exon 1663301 1663549 . - . gene_id "RvY_00579"; transcript_id "RvY_00579.1"; Scaffold001 rebuild transcript 1664783 1668787 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; gene_name "RFWD2"; annotation "E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[WD40] WD domain, G-beta repeat|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10143"; similar_genes "RFWD2_HUMAN(e-value:2.5e-20;bit-score:97.0)"; Scaffold001 rebuild exon 1664783 1664845 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1664918 1665066 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1665217 1665468 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1665621 1665819 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1666165 1666529 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1666885 1667224 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1667397 1667465 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1667540 1667674 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1667748 1667839 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1667931 1668028 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1668214 1668273 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild exon 1668480 1668787 . - . gene_id "RvY_00580"; transcript_id "RvY_00580.1"; Scaffold001 rebuild transcript 1669675 1673006 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; gene_name "PLK1"; annotation "Serine/threonine-protein kinase PLK1"; Pfam "[POLO_box] POLO box duplicated region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.21"; KO "K06631"; similar_genes "PLK1_BOVIN(e-value:1.0e-97;bit-score:354.0)"; Scaffold001 rebuild exon 1669675 1669767 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1669847 1669954 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1670031 1670147 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1670477 1670694 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1670778 1670873 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1671078 1671421 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1671511 1671603 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1671717 1671870 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1672157 1672286 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1672345 1672458 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild exon 1672746 1673006 . + . gene_id "RvY_00581"; transcript_id "RvY_00581.1"; Scaffold001 rebuild transcript 1673406 1674139 . - . gene_id "RvY_00582"; transcript_id "RvY_00582.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; Scaffold001 rebuild exon 1673406 1673563 . - . gene_id "RvY_00582"; transcript_id "RvY_00582.1"; Scaffold001 rebuild exon 1673634 1673840 . - . gene_id "RvY_00582"; transcript_id "RvY_00582.1"; Scaffold001 rebuild exon 1674046 1674139 . - . gene_id "RvY_00582"; transcript_id "RvY_00582.1"; Scaffold001 rebuild transcript 1675046 1676008 . - . gene_id "RvY_00583"; transcript_id "RvY_00583.1"; gene_name "STYKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase."; Scaffold001 rebuild exon 1675046 1675694 . - . gene_id "RvY_00583"; transcript_id "RvY_00583.1"; Scaffold001 rebuild exon 1675764 1676008 . - . gene_id "RvY_00583"; transcript_id "RvY_00583.1"; Scaffold001 rebuild transcript 1677086 1677299 . - . gene_id "RvY_00584"; transcript_id "RvY_00584.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1677086 1677104 . - . gene_id "RvY_00584"; transcript_id "RvY_00584.1"; Scaffold001 rebuild exon 1677172 1677299 . - . gene_id "RvY_00584"; transcript_id "RvY_00584.1"; Scaffold001 rebuild transcript 1677868 1678147 . + . gene_id "RvY_00585"; transcript_id "RvY_00585.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1677868 1677894 . + . gene_id "RvY_00585"; transcript_id "RvY_00585.1"; Scaffold001 rebuild exon 1677938 1678147 . + . gene_id "RvY_00585"; transcript_id "RvY_00585.1"; Scaffold001 rebuild transcript 1678158 1678475 . + . gene_id "RvY_00586"; transcript_id "RvY_00586.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1678158 1678259 . + . gene_id "RvY_00586"; transcript_id "RvY_00586.1"; Scaffold001 rebuild exon 1678377 1678475 . + . gene_id "RvY_00586"; transcript_id "RvY_00586.1"; Scaffold001 rebuild transcript 1683358 1683667 . - . gene_id "RvY_00587"; transcript_id "RvY_00587.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1683358 1683521 . - . gene_id "RvY_00587"; transcript_id "RvY_00587.1"; Scaffold001 rebuild exon 1683604 1683667 . - . gene_id "RvY_00587"; transcript_id "RvY_00587.1"; Scaffold001 rebuild transcript 1685007 1685315 . + . gene_id "RvY_00588"; transcript_id "RvY_00588.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1685007 1685315 . + . gene_id "RvY_00588"; transcript_id "RvY_00588.1"; Scaffold001 rebuild transcript 1685524 1686026 . + . gene_id "RvY_00589"; transcript_id "RvY_00589.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1685524 1685554 . + . gene_id "RvY_00589"; transcript_id "RvY_00589.1"; Scaffold001 rebuild exon 1685809 1686026 . + . gene_id "RvY_00589"; transcript_id "RvY_00589.1"; Scaffold001 rebuild transcript 1686302 1686526 . + . gene_id "RvY_00590"; transcript_id "RvY_00590.1"; gene_name "RPT1"; annotation "hypothetical protein."; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]"; similar_genes "Y1297_ARCFU(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 1686302 1686526 . + . gene_id "RvY_00590"; transcript_id "RvY_00590.1"; Scaffold001 rebuild transcript 1686947 1687341 . + . gene_id "RvY_00591"; transcript_id "RvY_00591.1"; gene_name "SpoVK"; annotation "hypothetical protein."; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 1686947 1687159 . + . gene_id "RvY_00591"; transcript_id "RvY_00591.1"; Scaffold001 rebuild exon 1687225 1687341 . + . gene_id "RvY_00591"; transcript_id "RvY_00591.1"; Scaffold001 rebuild transcript 1688557 1690069 . + . gene_id "RvY_00592"; transcript_id "RvY_00592.1"; gene_name "SMC_prok_A"; annotation "hypothetical protein."; Pfam "[TPR_MLP1_2] TPR/MLP1/MLP2-like protein"; CDD "chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent."; Scaffold001 rebuild exon 1688557 1688832 . + . gene_id "RvY_00592"; transcript_id "RvY_00592.1"; Scaffold001 rebuild exon 1688894 1689420 . + . gene_id "RvY_00592"; transcript_id "RvY_00592.1"; Scaffold001 rebuild exon 1689478 1690069 . + . gene_id "RvY_00592"; transcript_id "RvY_00592.1"; Scaffold001 rebuild transcript 1691738 1696850 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; annotation "hypothetical protein."; Pfam "[Arm_2] Armadillo-like|[HEAT_2] HEAT repeats"; Scaffold001 rebuild exon 1691738 1692184 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1692448 1692907 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1693284 1693602 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1693838 1694368 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1694628 1695230 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1695700 1696178 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1696257 1696349 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild exon 1696543 1696850 . - . gene_id "RvY_00593"; transcript_id "RvY_00593.1"; Scaffold001 rebuild transcript 1698524 1699510 . - . gene_id "RvY_00594"; transcript_id "RvY_00594.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1698524 1699510 . - . gene_id "RvY_00594"; transcript_id "RvY_00594.1"; Scaffold001 rebuild transcript 1700118 1702005 . + . gene_id "RvY_00595"; transcript_id "RvY_00595.1"; gene_name "SpoVK"; annotation "hypothetical protein."; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 1700118 1700474 . + . gene_id "RvY_00595"; transcript_id "RvY_00595.1"; Scaffold001 rebuild exon 1700604 1700694 . + . gene_id "RvY_00595"; transcript_id "RvY_00595.1"; Scaffold001 rebuild exon 1700996 1701167 . + . gene_id "RvY_00595"; transcript_id "RvY_00595.1"; Scaffold001 rebuild exon 1701236 1701470 . + . gene_id "RvY_00595"; transcript_id "RvY_00595.1"; Scaffold001 rebuild exon 1701856 1702005 . + . gene_id "RvY_00595"; transcript_id "RvY_00595.1"; Scaffold001 rebuild transcript 1702672 1705286 . - . gene_id "RvY_00596"; transcript_id "RvY_00596.1"; gene_name "ORB"; annotation "Cytoplasmic polyadenylation element-binding protein 1-B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K02602"; similar_genes "CPE1B_XENLA(e-value:2.8e-53;bit-score:206.0)"; Scaffold001 rebuild exon 1702672 1702985 . - . gene_id "RvY_00596"; transcript_id "RvY_00596.1"; Scaffold001 rebuild exon 1703365 1703676 . - . gene_id "RvY_00596"; transcript_id "RvY_00596.1"; Scaffold001 rebuild exon 1703966 1704092 . - . gene_id "RvY_00596"; transcript_id "RvY_00596.1"; Scaffold001 rebuild exon 1704168 1704985 . - . gene_id "RvY_00596"; transcript_id "RvY_00596.1"; Scaffold001 rebuild exon 1705157 1705286 . - . gene_id "RvY_00596"; transcript_id "RvY_00596.1"; Scaffold001 rebuild transcript 1706188 1709668 . - . gene_id "RvY_00597"; transcript_id "RvY_00597.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1706188 1706946 . - . gene_id "RvY_00597"; transcript_id "RvY_00597.1"; Scaffold001 rebuild exon 1707621 1707965 . - . gene_id "RvY_00597"; transcript_id "RvY_00597.1"; Scaffold001 rebuild exon 1709078 1709668 . - . gene_id "RvY_00597"; transcript_id "RvY_00597.1"; Scaffold001 rebuild transcript 1710082 1711627 . - . gene_id "RvY_00598"; transcript_id "RvY_00598.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1710082 1711160 . - . gene_id "RvY_00598"; transcript_id "RvY_00598.1"; Scaffold001 rebuild exon 1711609 1711627 . - . gene_id "RvY_00598"; transcript_id "RvY_00598.1"; Scaffold001 rebuild transcript 1712324 1713526 . - . gene_id "RvY_00599"; transcript_id "RvY_00599.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1712324 1713526 . - . gene_id "RvY_00599"; transcript_id "RvY_00599.1"; Scaffold001 rebuild transcript 1713863 1714444 . - . gene_id "RvY_00600"; transcript_id "RvY_00600.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1713863 1714444 . - . gene_id "RvY_00600"; transcript_id "RvY_00600.1"; Scaffold001 rebuild transcript 1716359 1718359 . - . gene_id "RvY_00601"; transcript_id "RvY_00601.1"; gene_name "K06867"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[CBM_20] Starch binding domain|[GDPD] Glycerophosphoryl diester phosphodiesterase family"; KO "K06867"; Scaffold001 rebuild exon 1716359 1717031 . - . gene_id "RvY_00601"; transcript_id "RvY_00601.1"; Scaffold001 rebuild exon 1717203 1717892 . - . gene_id "RvY_00601"; transcript_id "RvY_00601.1"; Scaffold001 rebuild exon 1718163 1718359 . - . gene_id "RvY_00601"; transcript_id "RvY_00601.1"; Scaffold001 rebuild transcript 1718643 1723431 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; gene_name "ERCC6"; annotation "DNA excision repair protein ERCC-6"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10841"; similar_genes "ERCC6_HUMAN(e-value:3.0e-80;bit-score:296.0)"; Scaffold001 rebuild exon 1718643 1719296 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1719539 1719870 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1720054 1720362 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1720425 1720623 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1720686 1720916 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1720985 1721197 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1721271 1721447 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1721643 1721813 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1721888 1722023 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1722090 1722389 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1722479 1722587 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1722668 1723038 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild exon 1723148 1723431 . - . gene_id "RvY_00602"; transcript_id "RvY_00602.1"; Scaffold001 rebuild transcript 1724982 1725818 . - . gene_id "RvY_00603"; transcript_id "RvY_00603.1"; gene_name "Robl_LC7"; annotation "putative Mitogen-activated protein-binding protein-interacting protein"; Pfam "[Robl_LC7] Roadblock/LC7 domain"; CDD "Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role."; similar_genes "MAPIP_SALSA(e-value:7.8e-45;bit-score:178.0)"; Scaffold001 rebuild exon 1724982 1725131 . - . gene_id "RvY_00603"; transcript_id "RvY_00603.1"; Scaffold001 rebuild exon 1725191 1725353 . - . gene_id "RvY_00603"; transcript_id "RvY_00603.1"; Scaffold001 rebuild exon 1725751 1725818 . - . gene_id "RvY_00603"; transcript_id "RvY_00603.1"; Scaffold001 rebuild transcript 1726161 1726540 . + . gene_id "RvY_00604"; transcript_id "RvY_00604.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1726161 1726379 . + . gene_id "RvY_00604"; transcript_id "RvY_00604.1"; Scaffold001 rebuild exon 1726436 1726540 . + . gene_id "RvY_00604"; transcript_id "RvY_00604.1"; Scaffold001 rebuild transcript 1727158 1730963 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; annotation "hypothetical protein."; Pfam "[SGT1] SGT1 protein"; similar_genes "SGT1_DICDI(e-value:8.4e-19;bit-score:92.0)"; Scaffold001 rebuild exon 1727158 1727321 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1727590 1727739 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1727892 1727979 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1728320 1728513 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1728915 1729056 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1729121 1729171 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1729343 1729471 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1729527 1729664 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1729741 1729936 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1729994 1730180 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild exon 1730459 1730963 . + . gene_id "RvY_00605"; transcript_id "RvY_00605.1"; Scaffold001 rebuild transcript 1731164 1732151 . - . gene_id "RvY_00606"; transcript_id "RvY_00606.1"; gene_name "PRK09256"; annotation "hypothetical protein."; Pfam "[RF-1]"; CDD "hypothetical protein; Provisional"; KO "K15033"; similar_genes "ICT1_MOUSE(e-value:3.4e-09;bit-score:60.0)"; Scaffold001 rebuild exon 1731164 1731248 . - . gene_id "RvY_00606"; transcript_id "RvY_00606.1"; Scaffold001 rebuild exon 1731310 1731562 . - . gene_id "RvY_00606"; transcript_id "RvY_00606.1"; Scaffold001 rebuild exon 1731764 1731823 . - . gene_id "RvY_00606"; transcript_id "RvY_00606.1"; Scaffold001 rebuild exon 1731894 1731945 . - . gene_id "RvY_00606"; transcript_id "RvY_00606.1"; Scaffold001 rebuild exon 1732011 1732151 . - . gene_id "RvY_00606"; transcript_id "RvY_00606.1"; Scaffold001 rebuild transcript 1734219 1734606 . - . gene_id "RvY_00607"; transcript_id "RvY_00607.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1734219 1734305 . - . gene_id "RvY_00607"; transcript_id "RvY_00607.1"; Scaffold001 rebuild exon 1734454 1734606 . - . gene_id "RvY_00607"; transcript_id "RvY_00607.1"; Scaffold001 rebuild transcript 1735041 1736535 . - . gene_id "RvY_00608"; transcript_id "RvY_00608.1"; gene_name "ZZ_NBR1_like"; annotation "hypothetical protein."; Pfam "[ZZ] Zinc finger, ZZ type|[PB1]"; CDD "Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain."; KO "K14381"; similar_genes "SQSTM_MOUSE(e-value:1.4e-10;bit-score:64.0)"; Scaffold001 rebuild exon 1735041 1735168 . - . gene_id "RvY_00608"; transcript_id "RvY_00608.1"; Scaffold001 rebuild exon 1735233 1735614 . - . gene_id "RvY_00608"; transcript_id "RvY_00608.1"; Scaffold001 rebuild exon 1735840 1736535 . - . gene_id "RvY_00608"; transcript_id "RvY_00608.1"; Scaffold001 rebuild transcript 1737440 1739384 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 1737440 1737837 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; Scaffold001 rebuild exon 1737902 1738103 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; Scaffold001 rebuild exon 1738178 1738327 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; Scaffold001 rebuild exon 1738415 1738637 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; Scaffold001 rebuild exon 1738835 1739237 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; Scaffold001 rebuild exon 1739312 1739384 . - . gene_id "RvY_00609"; transcript_id "RvY_00609.1"; Scaffold001 rebuild transcript 1739736 1740083 . - . gene_id "RvY_00610"; transcript_id "RvY_00610.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1739736 1740083 . - . gene_id "RvY_00610"; transcript_id "RvY_00610.1"; Scaffold001 rebuild transcript 1742053 1743448 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.1"; gene_name "(1)DNA_pol_phi"; annotation "hypothetical protein."; CDD "(1)DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units."; Scaffold001 rebuild exon 1742053 1742104 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.1"; Scaffold001 rebuild exon 1742166 1742344 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.1"; Scaffold001 rebuild exon 1743350 1743448 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.1"; Scaffold001 rebuild transcript 1741977 1742286 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.2"; gene_name "(1)DNA_pol_phi"; annotation "hypothetical protein."; CDD "(1)DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units."; Scaffold001 rebuild exon 1741977 1742104 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.2"; Scaffold001 rebuild exon 1742166 1742286 . - . gene_id "RvY_00611"; transcript_id "RvY_00611.2"; Scaffold001 rebuild transcript 1744253 1746469 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; gene_name "STK3"; annotation "Serine/threonine-protein kinase 3"; Pfam "[Mst1_SARAH] C terminal SARAH domain of Mst1|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress."; EC "EC2.7.11.1|EC2.7.11.5"; KO "K04412"; similar_genes "STK3_HUMAN(e-value:7.5e-126;bit-score:447.0)"; Scaffold001 rebuild exon 1744253 1744406 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; Scaffold001 rebuild exon 1744476 1744875 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; Scaffold001 rebuild exon 1745136 1745484 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; Scaffold001 rebuild exon 1745669 1745690 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; Scaffold001 rebuild exon 1745848 1745950 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; Scaffold001 rebuild exon 1746034 1746469 . - . gene_id "RvY_00612"; transcript_id "RvY_00612.1"; Scaffold001 rebuild transcript 1751256 1754389 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; annotation "hypothetical protein."; Pfam "[WW]"; Scaffold001 rebuild exon 1751256 1751547 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; Scaffold001 rebuild exon 1751998 1752307 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; Scaffold001 rebuild exon 1752399 1752562 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; Scaffold001 rebuild exon 1753057 1753577 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; Scaffold001 rebuild exon 1753902 1754195 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; Scaffold001 rebuild exon 1754291 1754389 . + . gene_id "RvY_00613"; transcript_id "RvY_00613.1"; Scaffold001 rebuild transcript 1755344 1756180 . + . gene_id "RvY_00614"; transcript_id "RvY_00614.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1755344 1755377 . + . gene_id "RvY_00614"; transcript_id "RvY_00614.1"; Scaffold001 rebuild exon 1755439 1755597 . + . gene_id "RvY_00614"; transcript_id "RvY_00614.1"; Scaffold001 rebuild exon 1755675 1755749 . + . gene_id "RvY_00614"; transcript_id "RvY_00614.1"; Scaffold001 rebuild exon 1755837 1756180 . + . gene_id "RvY_00614"; transcript_id "RvY_00614.1"; Scaffold001 rebuild transcript 1756919 1758337 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; gene_name "ADPRase_NUDT9"; annotation "hypothetical protein."; Pfam "[NUDIX]"; CDD "ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U"; EC "EC3.6.1.13"; KO "K13988"; similar_genes "NUDT9_RAT(e-value:2.1e-15;bit-score:80.0)"; Scaffold001 rebuild exon 1756919 1757154 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; Scaffold001 rebuild exon 1757223 1757353 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; Scaffold001 rebuild exon 1757423 1757474 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; Scaffold001 rebuild exon 1757551 1757659 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; Scaffold001 rebuild exon 1757735 1757893 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; Scaffold001 rebuild exon 1758107 1758337 . + . gene_id "RvY_00615"; transcript_id "RvY_00615.1"; Scaffold001 rebuild transcript 1759448 1768900 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; gene_name "metH"; annotation "Probable methionine synthase"; Pfam "[B12-binding] B12 binding domain|[S-methyl_trans] Homocysteine S-methyltransferase|[Met_synt_B12] Vitamin B12 dependent methionine synthase, activation domain|[Pterin_bind] Pterin binding enzyme|[B12-binding_2] B12 binding domain"; CDD "B12-dependent methionine synthase; Provisional"; EC "EC2.1.1.13"; KO "K00548"; similar_genes "METH_CAEEL(e-value:1.6e-115;bit-score:413.0)"; Scaffold001 rebuild exon 1759448 1760186 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild exon 1764958 1765559 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild exon 1765626 1765982 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild exon 1766193 1766601 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild exon 1766664 1766915 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild exon 1767095 1768224 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild exon 1768532 1768900 . + . gene_id "RvY_00616"; transcript_id "RvY_00616.1"; Scaffold001 rebuild transcript 1769512 1770057 . - . gene_id "RvY_00617"; transcript_id "RvY_00617.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1769512 1770057 . - . gene_id "RvY_00617"; transcript_id "RvY_00617.1"; Scaffold001 rebuild transcript 1771605 1777469 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; gene_name "KAP95"; annotation "putative Importin-5"; Pfam "[RIX1] rRNA processing/ribosome biogenesis|[HEAT_2] HEAT repeats|[Cnd1] non-SMC mitotic condensation complex subunit 1|[HEAT_EZ] HEAT-like repeat|[Vac14_Fab1_bd] Vacuolar 14 Fab1-binding region|[HEAT] HEAT repeat"; CDD "Karyopherin (importin) beta [Intracellular trafficking and secretion]"; similar_genes "IPO5_HUMAN(e-value:3.4e-26;bit-score:116.0)"; Scaffold001 rebuild exon 1771605 1771679 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1771755 1771847 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1771974 1772272 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1772341 1772671 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1773003 1773126 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1773203 1773400 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1773639 1773760 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1773867 1774130 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1774199 1774299 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1774375 1774492 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1774742 1775180 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1775452 1775624 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1775697 1775808 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1775887 1776065 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1776174 1776248 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1776463 1776786 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1777071 1777292 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild exon 1777362 1777469 . + . gene_id "RvY_00618"; transcript_id "RvY_00618.1"; Scaffold001 rebuild transcript 1777818 1778411 . - . gene_id "RvY_00619"; transcript_id "RvY_00619.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1777818 1778411 . - . gene_id "RvY_00619"; transcript_id "RvY_00619.1"; Scaffold001 rebuild transcript 1778447 1779170 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1778447 1778788 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.1"; Scaffold001 rebuild exon 1778904 1779170 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.1"; Scaffold001 rebuild transcript 1778444 1779170 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1778444 1778446 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.2"; Scaffold001 rebuild exon 1778537 1778788 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.2"; Scaffold001 rebuild exon 1778904 1779170 . - . gene_id "RvY_00620"; transcript_id "RvY_00620.2"; Scaffold001 framed transcript 1779430 1779681 . + . gene_id "RvY_00621"; transcript_id "RvY_00621.1"; annotation "hypothetical protein."; Scaffold001 framed exon 1779430 1779681 . + . gene_id "RvY_00621"; transcript_id "RvY_00621.1"; Scaffold001 rebuild transcript 1779665 1779868 . - . gene_id "RvY_00622"; transcript_id "RvY_00622.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1779665 1779868 . - . gene_id "RvY_00622"; transcript_id "RvY_00622.1"; Scaffold001 rebuild transcript 1796628 1797542 . + . gene_id "RvY_00624"; transcript_id "RvY_00624.1"; gene_name "ORC6"; annotation "origin recognition complex subunit 6"; KO "K02608"; Scaffold001 rebuild exon 1796628 1797542 . + . gene_id "RvY_00624"; transcript_id "RvY_00624.1"; Scaffold001 rebuild transcript 1797975 1799490 . - . gene_id "RvY_00625"; transcript_id "RvY_00625.1"; gene_name "AAR2"; annotation "A1 cistron-splicing factor AAR2"; Pfam "[AAR2] AAR2 protein"; KO "K13205"; similar_genes "YQQ2_CAEEL(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 1797975 1798917 . - . gene_id "RvY_00625"; transcript_id "RvY_00625.1"; Scaffold001 rebuild exon 1799216 1799490 . - . gene_id "RvY_00625"; transcript_id "RvY_00625.1"; Scaffold001 rebuild transcript 1801537 1804690 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; similar_genes "PXK_MOUSE(e-value:5.1e-25;bit-score:112.0)"; Scaffold001 rebuild exon 1801537 1801954 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1802142 1802341 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1802611 1802735 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1802903 1803146 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1803213 1803290 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1803548 1803699 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1803977 1804073 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild exon 1804160 1804690 . - . gene_id "RvY_00626"; transcript_id "RvY_00626.1"; Scaffold001 rebuild transcript 1805664 1805918 . + . gene_id "RvY_00627"; transcript_id "RvY_00627.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1805664 1805918 . + . gene_id "RvY_00627"; transcript_id "RvY_00627.1"; Scaffold001 rebuild transcript 1806310 1807482 . + . gene_id "RvY_00628"; transcript_id "RvY_00628.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1806310 1806844 . + . gene_id "RvY_00628"; transcript_id "RvY_00628.1"; Scaffold001 rebuild exon 1807460 1807482 . + . gene_id "RvY_00628"; transcript_id "RvY_00628.1"; Scaffold001 rebuild transcript 1808105 1810489 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; gene_name "PRPF31"; annotation "U4/U6 small nuclear ribonucleoprotein Prp31"; Pfam "[NOSIC] NOSIC (NUC001) domain|[Nop] Putative snoRNA binding domain|[Prp31_C] Prp31 C terminal domain"; CDD "Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]"; KO "K12844"; similar_genes "PRP31_HUMAN(e-value:7.2e-86;bit-score:314.0)"; Scaffold001 rebuild exon 1808105 1808350 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1808435 1808563 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1808634 1808924 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1809011 1809168 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1809326 1809495 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1809573 1809679 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1809770 1809867 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1809999 1810082 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1810200 1810257 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild exon 1810322 1810489 . - . gene_id "RvY_00629"; transcript_id "RvY_00629.1"; Scaffold001 rebuild transcript 1810966 1812497 . + . gene_id "RvY_00630"; transcript_id "RvY_00630.1"; gene_name "TFIIE1"; annotation "transcription initiation factor TFIIE alpha subunit"; Pfam "[TFIIE-A_C-term] C-terminal general transcription factor TFIIE alpha|[TFIIE_alpha] TFIIE alpha subunit|[TF_Zn_Ribbon] TFIIB zinc-binding"; CDD "Transcription initiation factor IIE."; KO "K03136"; Scaffold001 rebuild exon 1810966 1811415 . + . gene_id "RvY_00630"; transcript_id "RvY_00630.1"; Scaffold001 rebuild exon 1811630 1812173 . + . gene_id "RvY_00630"; transcript_id "RvY_00630.1"; Scaffold001 rebuild exon 1812235 1812497 . + . gene_id "RvY_00630"; transcript_id "RvY_00630.1"; Scaffold001 rebuild transcript 1813528 1813947 . + . gene_id "RvY_00631"; transcript_id "RvY_00631.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1813528 1813723 . + . gene_id "RvY_00631"; transcript_id "RvY_00631.1"; Scaffold001 rebuild exon 1813847 1813947 . + . gene_id "RvY_00631"; transcript_id "RvY_00631.1"; Scaffold001 rebuild transcript 1814560 1818828 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1814560 1814591 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1814987 1815418 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1815611 1815721 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1815792 1815995 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1816242 1816493 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1816554 1817165 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1817397 1817484 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild exon 1818574 1818828 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.1"; Scaffold001 rebuild transcript 1814560 1818828 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1814560 1814591 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1814987 1815418 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1815611 1815721 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1815792 1815995 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1816338 1816493 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1816554 1817165 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1817397 1817484 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild exon 1818574 1818828 . - . gene_id "RvY_00632"; transcript_id "RvY_00632.2"; Scaffold001 rebuild transcript 1821340 1825509 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1821340 1821783 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild exon 1821851 1822032 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild exon 1822270 1823031 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild exon 1823289 1823912 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild exon 1824035 1824333 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild exon 1824746 1824944 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild exon 1825350 1825509 . - . gene_id "RvY_00633"; transcript_id "RvY_00633.1"; Scaffold001 rebuild transcript 1828540 1828755 . - . gene_id "RvY_00634"; transcript_id "RvY_00634.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1828540 1828755 . - . gene_id "RvY_00634"; transcript_id "RvY_00634.1"; Scaffold001 rebuild transcript 1828955 1829994 . + . gene_id "RvY_00635"; transcript_id "RvY_00635.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1828955 1829074 . + . gene_id "RvY_00635"; transcript_id "RvY_00635.1"; Scaffold001 rebuild exon 1829188 1829307 . + . gene_id "RvY_00635"; transcript_id "RvY_00635.1"; Scaffold001 rebuild exon 1829527 1829575 . + . gene_id "RvY_00635"; transcript_id "RvY_00635.1"; Scaffold001 rebuild exon 1829831 1829994 . + . gene_id "RvY_00635"; transcript_id "RvY_00635.1"; Scaffold001 rebuild transcript 1830191 1830607 . + . gene_id "RvY_00636"; transcript_id "RvY_00636.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1830191 1830607 . + . gene_id "RvY_00636"; transcript_id "RvY_00636.1"; Scaffold001 rebuild transcript 1831093 1832045 . - . gene_id "RvY_00637"; transcript_id "RvY_00637.1"; gene_name "SFRS3"; annotation "putative Splicing factor, arginine/serine-rich 3"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 1831093 1831328 . - . gene_id "RvY_00637"; transcript_id "RvY_00637.1"; Scaffold001 rebuild exon 1831685 1832045 . - . gene_id "RvY_00637"; transcript_id "RvY_00637.1"; Scaffold001 rebuild transcript 1832614 1834865 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; gene_name "FBXW7"; annotation "putative F-box/WD repeat-containing protein 7"; Pfam "[WD40] WD domain, G-beta repeat|[F-box-like]|[Nup160] Nucleoporin Nup120/160|[F-box]"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K10260"; similar_genes "FBXW7_DROME(e-value:1.8e-31;bit-score:134.0)"; Scaffold001 rebuild exon 1832614 1832658 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1832818 1832994 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1833105 1833368 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1833431 1833547 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1833613 1833794 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1833860 1834112 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1834190 1834236 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1834331 1834497 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild exon 1834582 1834865 . + . gene_id "RvY_00638"; transcript_id "RvY_00638.1"; Scaffold001 rebuild transcript 1835307 1836178 . - . gene_id "RvY_00639"; transcript_id "RvY_00639.1"; gene_name "RP-L9e"; annotation "60S ribosomal protein L9"; Pfam "[Ribosomal_L6] Ribosomal protein L6"; CDD "60S ribosomal protein L6; Provisional"; KO "K02940"; similar_genes "RL9_DROME(e-value:8.3e-53;bit-score:204.0)"; Scaffold001 rebuild exon 1835307 1835410 . - . gene_id "RvY_00639"; transcript_id "RvY_00639.1"; Scaffold001 rebuild exon 1835531 1835744 . - . gene_id "RvY_00639"; transcript_id "RvY_00639.1"; Scaffold001 rebuild exon 1835848 1836053 . - . gene_id "RvY_00639"; transcript_id "RvY_00639.1"; Scaffold001 rebuild exon 1836133 1836178 . - . gene_id "RvY_00639"; transcript_id "RvY_00639.1"; Scaffold001 rebuild transcript 1836592 1836972 . + . gene_id "RvY_00640"; transcript_id "RvY_00640.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1836592 1836972 . + . gene_id "RvY_00640"; transcript_id "RvY_00640.1"; Scaffold001 rebuild transcript 1837487 1840778 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold001 rebuild exon 1837487 1837855 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1838110 1838272 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1838345 1838536 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1838716 1838822 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1839084 1839236 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1839310 1839372 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1839483 1839539 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1839625 1839735 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1839820 1839917 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1840005 1840072 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1840134 1840216 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1840363 1840452 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild exon 1840512 1840778 . - . gene_id "RvY_00641"; transcript_id "RvY_00641.1"; Scaffold001 rebuild transcript 1841767 1842202 . + . gene_id "RvY_00642"; transcript_id "RvY_00642.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1841767 1841795 . + . gene_id "RvY_00642"; transcript_id "RvY_00642.1"; Scaffold001 rebuild exon 1841875 1842202 . + . gene_id "RvY_00642"; transcript_id "RvY_00642.1"; Scaffold001 rebuild transcript 1842277 1842652 . + . gene_id "RvY_00643"; transcript_id "RvY_00643.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1842277 1842382 . + . gene_id "RvY_00643"; transcript_id "RvY_00643.1"; Scaffold001 rebuild exon 1842397 1842552 . + . gene_id "RvY_00643"; transcript_id "RvY_00643.1"; Scaffold001 rebuild exon 1842612 1842652 . + . gene_id "RvY_00643"; transcript_id "RvY_00643.1"; Scaffold001 rebuild transcript 1843096 1846510 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; annotation "hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "ANO10_MOUSE(e-value:3.4e-24;bit-score:109.0)"; Scaffold001 rebuild exon 1843096 1843245 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1843315 1843431 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1843494 1843781 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1843892 1843927 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1844186 1844558 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1844856 1845120 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1845187 1845474 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1845553 1845672 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1845732 1845875 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1846122 1846263 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild exon 1846328 1846510 . - . gene_id "RvY_00644"; transcript_id "RvY_00644.1"; Scaffold001 rebuild transcript 1847671 1848308 . + . gene_id "RvY_00645"; transcript_id "RvY_00645.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1847671 1847799 . + . gene_id "RvY_00645"; transcript_id "RvY_00645.1"; Scaffold001 rebuild exon 1847892 1848168 . + . gene_id "RvY_00645"; transcript_id "RvY_00645.1"; Scaffold001 rebuild exon 1848256 1848308 . + . gene_id "RvY_00645"; transcript_id "RvY_00645.1"; Scaffold001 rebuild transcript 1847671 1848003 . + . gene_id "RvY_00645"; transcript_id "RvY_00645.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1847671 1848003 . + . gene_id "RvY_00645"; transcript_id "RvY_00645.2"; Scaffold001 rebuild transcript 1850176 1851464 . - . gene_id "RvY_00646"; transcript_id "RvY_00646.1"; gene_name "eIF-35"; annotation "translation initiation factor eIF-3 subunit 5"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease|[MitMem_reg] Maintenance of mitochondrial structure and function"; KO "K03249"; similar_genes "EIF3F_PANTR(e-value:2.3e-10;bit-score:63.0)"; Scaffold001 rebuild exon 1850176 1850259 . - . gene_id "RvY_00646"; transcript_id "RvY_00646.1"; Scaffold001 rebuild exon 1850336 1850449 . - . gene_id "RvY_00646"; transcript_id "RvY_00646.1"; Scaffold001 rebuild exon 1850528 1850664 . - . gene_id "RvY_00646"; transcript_id "RvY_00646.1"; Scaffold001 rebuild exon 1850736 1851090 . - . gene_id "RvY_00646"; transcript_id "RvY_00646.1"; Scaffold001 rebuild exon 1851240 1851464 . - . gene_id "RvY_00646"; transcript_id "RvY_00646.1"; Scaffold001 rebuild transcript 1852671 1853611 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1852671 1852728 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.1"; Scaffold001 rebuild exon 1852799 1852923 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.1"; Scaffold001 rebuild exon 1853147 1853611 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.1"; Scaffold001 rebuild transcript 1852067 1852717 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1852067 1852231 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.2"; Scaffold001 rebuild exon 1852313 1852717 . + . gene_id "RvY_00647"; transcript_id "RvY_00647.2"; Scaffold001 rebuild transcript 1853759 1854959 . - . gene_id "RvY_00648"; transcript_id "RvY_00648.1"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; Scaffold001 rebuild exon 1853759 1854138 . - . gene_id "RvY_00648"; transcript_id "RvY_00648.1"; Scaffold001 rebuild exon 1854313 1854409 . - . gene_id "RvY_00648"; transcript_id "RvY_00648.1"; Scaffold001 rebuild exon 1854471 1854496 . - . gene_id "RvY_00648"; transcript_id "RvY_00648.1"; Scaffold001 rebuild exon 1854567 1854725 . - . gene_id "RvY_00648"; transcript_id "RvY_00648.1"; Scaffold001 rebuild exon 1854830 1854959 . - . gene_id "RvY_00648"; transcript_id "RvY_00648.1"; Scaffold001 rebuild transcript 1855915 1856603 . - . gene_id "RvY_00649"; transcript_id "RvY_00649.1"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; Scaffold001 rebuild exon 1855915 1856037 . - . gene_id "RvY_00649"; transcript_id "RvY_00649.1"; Scaffold001 rebuild exon 1856101 1856126 . - . gene_id "RvY_00649"; transcript_id "RvY_00649.1"; Scaffold001 rebuild exon 1856199 1856338 . - . gene_id "RvY_00649"; transcript_id "RvY_00649.1"; Scaffold001 rebuild exon 1856404 1856603 . - . gene_id "RvY_00649"; transcript_id "RvY_00649.1"; Scaffold001 rebuild transcript 1857172 1858330 . - . gene_id "RvY_00650"; transcript_id "RvY_00650.1"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; similar_genes "SODCP_MEDSA(e-value:1.2e-13;bit-score:74.0)"; Scaffold001 rebuild exon 1857172 1857416 . - . gene_id "RvY_00650"; transcript_id "RvY_00650.1"; Scaffold001 rebuild exon 1857502 1857628 . - . gene_id "RvY_00650"; transcript_id "RvY_00650.1"; Scaffold001 rebuild exon 1857693 1857718 . - . gene_id "RvY_00650"; transcript_id "RvY_00650.1"; Scaffold001 rebuild exon 1857792 1857931 . - . gene_id "RvY_00650"; transcript_id "RvY_00650.1"; Scaffold001 rebuild exon 1857990 1858330 . - . gene_id "RvY_00650"; transcript_id "RvY_00650.1"; Scaffold001 rebuild transcript 1858908 1859762 . - . gene_id "RvY_00651"; transcript_id "RvY_00651.1"; gene_name "sodC"; annotation "Superoxide dismutase [Cu-Zn]"; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; KO "K04565"; similar_genes "SODC_RAT(e-value:8.7e-59;bit-score:224.0)"; Scaffold001 rebuild exon 1858908 1859022 . - . gene_id "RvY_00651"; transcript_id "RvY_00651.1"; Scaffold001 rebuild exon 1859111 1859189 . - . gene_id "RvY_00651"; transcript_id "RvY_00651.1"; Scaffold001 rebuild exon 1859323 1859450 . - . gene_id "RvY_00651"; transcript_id "RvY_00651.1"; Scaffold001 rebuild exon 1859552 1859573 . - . gene_id "RvY_00651"; transcript_id "RvY_00651.1"; Scaffold001 rebuild exon 1859642 1859762 . - . gene_id "RvY_00651"; transcript_id "RvY_00651.1"; Scaffold001 rebuild transcript 1860498 1861541 . + . gene_id "RvY_00652"; transcript_id "RvY_00652.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1860498 1860561 . + . gene_id "RvY_00652"; transcript_id "RvY_00652.1"; Scaffold001 rebuild exon 1860592 1860840 . + . gene_id "RvY_00652"; transcript_id "RvY_00652.1"; Scaffold001 rebuild exon 1861186 1861541 . + . gene_id "RvY_00652"; transcript_id "RvY_00652.1"; Scaffold001 rebuild transcript 1862201 1864617 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; gene_name "OPN3"; annotation "opsin 3 (encephalopsin, panopsin)"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04256"; Scaffold001 rebuild exon 1862201 1862485 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1862558 1862788 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1863041 1863200 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1863319 1863370 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1863453 1863560 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1863949 1864041 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1864252 1864275 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild exon 1864347 1864617 . - . gene_id "RvY_00653"; transcript_id "RvY_00653.1"; Scaffold001 rebuild transcript 1864889 1865355 . + . gene_id "RvY_00654"; transcript_id "RvY_00654.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1864889 1865098 . + . gene_id "RvY_00654"; transcript_id "RvY_00654.1"; Scaffold001 rebuild exon 1865209 1865355 . + . gene_id "RvY_00654"; transcript_id "RvY_00654.1"; Scaffold001 rebuild transcript 1865718 1868227 . - . gene_id "RvY_00655"; transcript_id "RvY_00655.1"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GUC2C_HUMAN(e-value:1.3e-06;bit-score:51.0)"; Scaffold001 rebuild exon 1865718 1865945 . - . gene_id "RvY_00655"; transcript_id "RvY_00655.1"; Scaffold001 rebuild exon 1866987 1867078 . - . gene_id "RvY_00655"; transcript_id "RvY_00655.1"; Scaffold001 rebuild exon 1868094 1868143 . - . gene_id "RvY_00655"; transcript_id "RvY_00655.1"; Scaffold001 rebuild exon 1868211 1868227 . - . gene_id "RvY_00655"; transcript_id "RvY_00655.1"; Scaffold001 rebuild transcript 1868299 1873279 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; gene_name "CYCc"; annotation "putative Retinal guanylyl cyclase 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GUC2D_CANFA(e-value:5.1e-42;bit-score:169.0)(2)GUC2D_CANFA(e-value:2.2e-40;bit-score:163.0)"; Scaffold001 rebuild exon 1868299 1868339 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1868517 1868679 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1868752 1868888 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1868961 1869043 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1869105 1869201 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1869291 1869512 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1869583 1869886 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1870165 1870467 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1870530 1870692 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1870786 1870903 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1871075 1871423 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1871491 1871661 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1871763 1871832 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1871949 1871980 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1872058 1872102 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1872159 1872202 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1872263 1872562 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild exon 1872829 1873279 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.1"; Scaffold001 rebuild transcript 1868479 1873279 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; gene_name "CYCc"; annotation "putative Retinal guanylyl cyclase 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GUC2D_CANFA(e-value:5.1e-42;bit-score:169.0)(2)GUC2D_CANFA(e-value:2.2e-40;bit-score:163.0)"; Scaffold001 rebuild exon 1868479 1868679 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1868752 1868888 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1868961 1869043 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1869105 1869201 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1869291 1869512 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1869583 1869886 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1870165 1870467 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1870530 1870692 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1870786 1870903 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1871075 1871423 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1871491 1871661 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1871763 1871832 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1871949 1871980 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1872058 1872102 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1872159 1872202 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1872263 1872562 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild exon 1872829 1873279 . - . gene_id "RvY_00656"; transcript_id "RvY_00656.2"; Scaffold001 rebuild transcript 1875045 1875661 . - . gene_id "RvY_00657"; transcript_id "RvY_00657.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1875045 1875092 . - . gene_id "RvY_00657"; transcript_id "RvY_00657.1"; Scaffold001 rebuild exon 1875401 1875661 . - . gene_id "RvY_00657"; transcript_id "RvY_00657.1"; Scaffold001 rebuild transcript 1876557 1877471 . + . gene_id "RvY_00658"; transcript_id "RvY_00658.1"; annotation "hypothetical protein."; similar_genes "YSH7_CAEEL(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 1876557 1877079 . + . gene_id "RvY_00658"; transcript_id "RvY_00658.1"; Scaffold001 rebuild exon 1877284 1877471 . + . gene_id "RvY_00658"; transcript_id "RvY_00658.1"; Scaffold001 rebuild transcript 1878511 1879396 . + . gene_id "RvY_00659"; transcript_id "RvY_00659.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1878511 1878937 . + . gene_id "RvY_00659"; transcript_id "RvY_00659.1"; Scaffold001 rebuild exon 1879218 1879396 . + . gene_id "RvY_00659"; transcript_id "RvY_00659.1"; Scaffold001 rebuild transcript 1878511 1878996 . + . gene_id "RvY_00659"; transcript_id "RvY_00659.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1878511 1878996 . + . gene_id "RvY_00659"; transcript_id "RvY_00659.2"; Scaffold001 rebuild transcript 1879077 1879494 . - . gene_id "RvY_00660"; transcript_id "RvY_00660.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1879077 1879280 . - . gene_id "RvY_00660"; transcript_id "RvY_00660.1"; Scaffold001 rebuild exon 1879351 1879494 . - . gene_id "RvY_00660"; transcript_id "RvY_00660.1"; Scaffold001 rebuild transcript 1880220 1881296 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1880220 1880316 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.1"; Scaffold001 rebuild exon 1880525 1880768 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.1"; Scaffold001 rebuild exon 1881134 1881296 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.1"; Scaffold001 rebuild transcript 1880220 1881238 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1880220 1880316 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.2"; Scaffold001 rebuild exon 1880525 1880768 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.2"; Scaffold001 rebuild exon 1881005 1881041 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.2"; Scaffold001 rebuild exon 1881134 1881238 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.2"; Scaffold001 rebuild transcript 1880220 1880853 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1880220 1880316 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.3"; Scaffold001 rebuild exon 1880525 1880853 . + . gene_id "RvY_00661"; transcript_id "RvY_00661.3"; Scaffold001 rebuild transcript 1881686 1882094 . - . gene_id "RvY_00662"; transcript_id "RvY_00662.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1881686 1881724 . - . gene_id "RvY_00662"; transcript_id "RvY_00662.1"; Scaffold001 rebuild exon 1881810 1882094 . - . gene_id "RvY_00662"; transcript_id "RvY_00662.1"; Scaffold001 rebuild transcript 1883122 1885454 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.1"; gene_name "(1)S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "(1)EC2.7.12.1"; similar_genes "(1)DYRK2_CHICK(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 1883122 1883151 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.1"; Scaffold001 rebuild exon 1883269 1883591 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.1"; Scaffold001 rebuild exon 1884228 1884603 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.1"; Scaffold001 rebuild exon 1884861 1885454 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.1"; Scaffold001 rebuild transcript 1882441 1883488 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.2"; gene_name "(1)S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "(1)EC2.7.12.1"; similar_genes "(1)DYRK2_CHICK(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 1882441 1882546 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.2"; Scaffold001 rebuild exon 1882755 1883151 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.2"; Scaffold001 rebuild exon 1883269 1883488 . - . gene_id "RvY_00663"; transcript_id "RvY_00663.2"; Scaffold001 rebuild transcript 1888123 1891355 . + . gene_id "RvY_00664"; transcript_id "RvY_00664.1"; gene_name "IPT"; annotation "hypothetical protein."; Pfam "[TIG] IPT/TIG domain"; CDD "ig-like, plexins, transcription factors."; Scaffold001 rebuild exon 1888123 1888246 . + . gene_id "RvY_00664"; transcript_id "RvY_00664.1"; Scaffold001 rebuild exon 1889168 1889333 . + . gene_id "RvY_00664"; transcript_id "RvY_00664.1"; Scaffold001 rebuild exon 1889426 1890008 . + . gene_id "RvY_00664"; transcript_id "RvY_00664.1"; Scaffold001 rebuild exon 1890129 1890828 . + . gene_id "RvY_00664"; transcript_id "RvY_00664.1"; Scaffold001 rebuild exon 1891009 1891355 . + . gene_id "RvY_00664"; transcript_id "RvY_00664.1"; Scaffold001 rebuild transcript 1891352 1892458 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.1"; gene_name "(1)SMC_prok_B"; annotation "hypothetical protein."; Pfam "[DUF972]"; CDD "(1)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold001 rebuild exon 1891352 1891570 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.1"; Scaffold001 rebuild exon 1891754 1892026 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.1"; Scaffold001 rebuild exon 1892099 1892458 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.1"; Scaffold001 rebuild transcript 1891352 1892149 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.2"; gene_name "(1)SMC_prok_B"; annotation "hypothetical protein."; Pfam "[DUF972]"; CDD "(1)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold001 rebuild exon 1891352 1891570 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.2"; Scaffold001 rebuild exon 1891754 1892026 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.2"; Scaffold001 rebuild exon 1892099 1892149 . - . gene_id "RvY_00665"; transcript_id "RvY_00665.2"; Scaffold001 rebuild transcript 1894236 1896696 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; gene_name "DM10"; annotation "hypothetical protein."; CDD "Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases."; Scaffold001 rebuild exon 1894236 1894253 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1894318 1894431 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1894515 1894650 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1894888 1895050 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1895115 1895254 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1895330 1895520 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1895596 1895741 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1895936 1896332 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild exon 1896598 1896696 . + . gene_id "RvY_00666"; transcript_id "RvY_00666.1"; Scaffold001 rebuild transcript 1896927 1897530 . - . gene_id "RvY_00667"; transcript_id "RvY_00667.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1896927 1897012 . - . gene_id "RvY_00667"; transcript_id "RvY_00667.1"; Scaffold001 rebuild exon 1897080 1897397 . - . gene_id "RvY_00667"; transcript_id "RvY_00667.1"; Scaffold001 rebuild exon 1897470 1897530 . - . gene_id "RvY_00667"; transcript_id "RvY_00667.1"; Scaffold001 rebuild transcript 1899902 1901212 . - . gene_id "RvY_00668"; transcript_id "RvY_00668.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "V2R_PIG(e-value:5.2e-10;bit-score:62.0)"; Scaffold001 rebuild exon 1899902 1900480 . - . gene_id "RvY_00668"; transcript_id "RvY_00668.1"; Scaffold001 rebuild exon 1901003 1901212 . - . gene_id "RvY_00668"; transcript_id "RvY_00668.1"; Scaffold001 rebuild transcript 1901552 1902424 . - . gene_id "RvY_00669"; transcript_id "RvY_00669.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "CTR2_OCTVU(e-value:2.7e-13;bit-score:73.0)"; Scaffold001 rebuild exon 1901552 1901773 . - . gene_id "RvY_00669"; transcript_id "RvY_00669.1"; Scaffold001 rebuild exon 1902248 1902424 . - . gene_id "RvY_00669"; transcript_id "RvY_00669.1"; Scaffold001 rebuild transcript 1905946 1907958 . - . gene_id "RvY_00670"; transcript_id "RvY_00670.1"; gene_name "WecE"; annotation "hypothetical protein."; Pfam "[DegT_DnrJ_EryC1] DegT/DnrJ/EryC1/StrS aminotransferase family"; CDD "Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]"; Scaffold001 rebuild exon 1905946 1906329 . - . gene_id "RvY_00670"; transcript_id "RvY_00670.1"; Scaffold001 rebuild exon 1906546 1906781 . - . gene_id "RvY_00670"; transcript_id "RvY_00670.1"; Scaffold001 rebuild exon 1906864 1907332 . - . gene_id "RvY_00670"; transcript_id "RvY_00670.1"; Scaffold001 rebuild exon 1907524 1907789 . - . gene_id "RvY_00670"; transcript_id "RvY_00670.1"; Scaffold001 rebuild exon 1907904 1907958 . - . gene_id "RvY_00670"; transcript_id "RvY_00670.1"; Scaffold001 rebuild transcript 1908874 1909667 . + . gene_id "RvY_00671"; transcript_id "RvY_00671.1"; gene_name "DnaJ"; annotation "hypothetical protein."; Pfam "[DnaJ]"; CDD "DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]"; similar_genes "DNJB6_XENTR(e-value:1.7e-06;bit-score:51.0)"; Scaffold001 rebuild exon 1908874 1909075 . + . gene_id "RvY_00671"; transcript_id "RvY_00671.1"; Scaffold001 rebuild exon 1909165 1909667 . + . gene_id "RvY_00671"; transcript_id "RvY_00671.1"; Scaffold001 rebuild transcript 1910628 1910903 . + . gene_id "RvY_00672"; transcript_id "RvY_00672.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1910628 1910903 . + . gene_id "RvY_00672"; transcript_id "RvY_00672.1"; Scaffold001 rebuild transcript 1911577 1911732 . + . gene_id "RvY_00673"; transcript_id "RvY_00673.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1911577 1911732 . + . gene_id "RvY_00673"; transcript_id "RvY_00673.1"; Scaffold001 rebuild transcript 1912617 1915847 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1912617 1912901 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1912985 1913385 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1913646 1913742 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1913817 1914436 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1914590 1914919 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1915096 1915381 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1915440 1915559 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild exon 1915746 1915847 . - . gene_id "RvY_00674"; transcript_id "RvY_00674.1"; Scaffold001 rebuild transcript 1915873 1917173 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold001 rebuild exon 1915873 1915919 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild exon 1916001 1916152 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild exon 1916237 1916305 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild exon 1916377 1916451 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild exon 1916515 1916590 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild exon 1916876 1916998 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild exon 1917056 1917173 . - . gene_id "RvY_00675"; transcript_id "RvY_00675.1"; Scaffold001 rebuild transcript 1918162 1919300 . - . gene_id "RvY_00676"; transcript_id "RvY_00676.1"; gene_name "DOHH"; annotation "putative Deoxyhypusine hydroxylase"; Pfam "[HEAT_2] HEAT repeats|[HEAT] HEAT repeat|[HEAT_PBS] PBS lyase HEAT-like repeat"; CDD "FOG: HEAT repeat [Energy production and conversion]"; EC "EC1.14.99.29"; KO "K06072"; similar_genes "DOHH_XENLA(e-value:2.7e-28;bit-score:123.0)"; Scaffold001 rebuild exon 1918162 1918478 . - . gene_id "RvY_00676"; transcript_id "RvY_00676.1"; Scaffold001 rebuild exon 1918544 1918787 . - . gene_id "RvY_00676"; transcript_id "RvY_00676.1"; Scaffold001 rebuild exon 1918856 1918932 . - . gene_id "RvY_00676"; transcript_id "RvY_00676.1"; Scaffold001 rebuild exon 1918991 1919300 . - . gene_id "RvY_00676"; transcript_id "RvY_00676.1"; Scaffold001 rebuild transcript 1919833 1920674 . + . gene_id "RvY_00677"; transcript_id "RvY_00677.1"; gene_name "RP-L24e"; annotation "putative 60S ribosomal protein L24"; Pfam "[Ribosomal_L24e] Ribosomal protein L24e"; CDD "Ribosomal protein L24e."; KO "K02896"; similar_genes "RL24_PAGMA(e-value:5.2e-27;bit-score:119.0)"; Scaffold001 rebuild exon 1919833 1919837 . + . gene_id "RvY_00677"; transcript_id "RvY_00677.1"; Scaffold001 rebuild exon 1919919 1919994 . + . gene_id "RvY_00677"; transcript_id "RvY_00677.1"; Scaffold001 rebuild exon 1920056 1920306 . + . gene_id "RvY_00677"; transcript_id "RvY_00677.1"; Scaffold001 rebuild exon 1920369 1920426 . + . gene_id "RvY_00677"; transcript_id "RvY_00677.1"; Scaffold001 rebuild exon 1920573 1920674 . + . gene_id "RvY_00677"; transcript_id "RvY_00677.1"; Scaffold001 rebuild transcript 1921993 1922685 . + . gene_id "RvY_00678"; transcript_id "RvY_00678.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1921993 1922090 . + . gene_id "RvY_00678"; transcript_id "RvY_00678.1"; Scaffold001 rebuild exon 1922199 1922685 . + . gene_id "RvY_00678"; transcript_id "RvY_00678.1"; Scaffold001 rebuild transcript 1923758 1929544 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; gene_name "SPDEF"; annotation "putative DNA-binding protein D-ETS-4"; Pfam "[SAM_PNT] Sterile alpha motif (SAM)/Pointed domain|[Ets] Ets-domain"; CDD "erythroblast transformation specific domain. variation of the helix-turn-helix motif"; KO "K09442"; similar_genes "ETS4_DROME(e-value:1.1e-37;bit-score:154.0)"; Scaffold001 rebuild exon 1923758 1923942 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild exon 1924226 1924366 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild exon 1924453 1924749 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild exon 1924811 1925014 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild exon 1927115 1927382 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild exon 1927575 1927814 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild exon 1929509 1929544 . - . gene_id "RvY_00679"; transcript_id "RvY_00679.1"; Scaffold001 rebuild transcript 1931947 1933740 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_32] Methyltransferase domain"; Scaffold001 rebuild exon 1931947 1932099 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; Scaffold001 rebuild exon 1932160 1932240 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; Scaffold001 rebuild exon 1932298 1932558 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; Scaffold001 rebuild exon 1932811 1933366 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; Scaffold001 rebuild exon 1933430 1933534 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; Scaffold001 rebuild exon 1933685 1933740 . + . gene_id "RvY_00680"; transcript_id "RvY_00680.1"; Scaffold001 rebuild transcript 1933681 1934016 . - . gene_id "RvY_00681"; transcript_id "RvY_00681.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1933681 1934016 . - . gene_id "RvY_00681"; transcript_id "RvY_00681.1"; Scaffold001 rebuild transcript 1934180 1938489 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; gene_name "AAK"; annotation "AP2-associated kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08853"; similar_genes "AAK1_RAT(e-value:1.0e-12;bit-score:71.0)"; Scaffold001 rebuild exon 1934180 1934670 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1934972 1935938 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1936246 1936686 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1936755 1936858 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1937081 1937213 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1937302 1937386 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1937452 1937574 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1937652 1937796 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1937888 1937999 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1938122 1938240 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild exon 1938411 1938489 . - . gene_id "RvY_00682"; transcript_id "RvY_00682.1"; Scaffold001 rebuild transcript 1939366 1941762 . + . gene_id "RvY_00683"; transcript_id "RvY_00683.1"; gene_name "SLC22A5"; annotation "MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 5"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; KO "K08202"; similar_genes "S22A4_PAPAN(e-value:8.9e-10;bit-score:62.0)"; Scaffold001 rebuild exon 1939366 1939554 . + . gene_id "RvY_00683"; transcript_id "RvY_00683.1"; Scaffold001 rebuild exon 1939765 1940110 . + . gene_id "RvY_00683"; transcript_id "RvY_00683.1"; Scaffold001 rebuild exon 1940178 1940552 . + . gene_id "RvY_00683"; transcript_id "RvY_00683.1"; Scaffold001 rebuild exon 1940867 1941762 . + . gene_id "RvY_00683"; transcript_id "RvY_00683.1"; Scaffold001 rebuild transcript 1945110 1948143 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; gene_name "XRCC1"; annotation "DNA-repair protein XRCC1"; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[XRCC1_N] XRCC1 N terminal domain|[PTCB-BRCT] twin BRCT domain"; CDD "XRCC1 N terminal domain."; KO "K10803"; similar_genes "XRCC1_CRIGR(e-value:5.8e-24;bit-score:109.0)"; Scaffold001 rebuild exon 1945110 1945166 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild exon 1945227 1945319 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild exon 1945518 1946553 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild exon 1946624 1946765 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild exon 1946945 1947147 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild exon 1947343 1947848 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild exon 1948030 1948143 . + . gene_id "RvY_00684"; transcript_id "RvY_00684.1"; Scaffold001 rebuild transcript 1948494 1949644 . - . gene_id "RvY_00685"; transcript_id "RvY_00685.1"; gene_name "NDUFB6"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 6 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUF_B6] NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03962"; Scaffold001 rebuild exon 1948494 1948616 . - . gene_id "RvY_00685"; transcript_id "RvY_00685.1"; Scaffold001 rebuild exon 1948704 1948725 . - . gene_id "RvY_00685"; transcript_id "RvY_00685.1"; Scaffold001 rebuild exon 1948865 1948899 . - . gene_id "RvY_00685"; transcript_id "RvY_00685.1"; Scaffold001 rebuild exon 1948957 1949058 . - . gene_id "RvY_00685"; transcript_id "RvY_00685.1"; Scaffold001 rebuild exon 1949366 1949644 . - . gene_id "RvY_00685"; transcript_id "RvY_00685.1"; Scaffold001 rebuild transcript 1952450 1961948 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; gene_name "PRK07764"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold001 rebuild exon 1952450 1952562 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1952762 1955338 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1955401 1955685 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1956036 1956461 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1956552 1957010 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1957224 1958969 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1959140 1959507 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1959696 1960116 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1960325 1960709 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1961023 1961342 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild exon 1961537 1961948 . - . gene_id "RvY_00686"; transcript_id "RvY_00686.1"; Scaffold001 rebuild transcript 1965191 1966378 . + . gene_id "RvY_00687"; transcript_id "RvY_00687.1"; gene_name "RAB"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking."; similar_genes "RB11A_DICDI(e-value:1.5e-09;bit-score:61.0)"; Scaffold001 rebuild exon 1965191 1965248 . + . gene_id "RvY_00687"; transcript_id "RvY_00687.1"; Scaffold001 rebuild exon 1965324 1965472 . + . gene_id "RvY_00687"; transcript_id "RvY_00687.1"; Scaffold001 rebuild exon 1965508 1965946 . + . gene_id "RvY_00687"; transcript_id "RvY_00687.1"; Scaffold001 rebuild exon 1966164 1966378 . + . gene_id "RvY_00687"; transcript_id "RvY_00687.1"; Scaffold001 rebuild transcript 1966397 1969263 . - . gene_id "RvY_00688"; transcript_id "RvY_00688.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold001 rebuild exon 1966397 1967147 . - . gene_id "RvY_00688"; transcript_id "RvY_00688.1"; Scaffold001 rebuild exon 1967445 1968329 . - . gene_id "RvY_00688"; transcript_id "RvY_00688.1"; Scaffold001 rebuild exon 1968530 1969263 . - . gene_id "RvY_00688"; transcript_id "RvY_00688.1"; Scaffold001 rebuild transcript 1969907 1971965 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15115"; similar_genes "MFTC_MACFA(e-value:1.3e-23;bit-score:108.0)"; Scaffold001 rebuild exon 1969907 1970043 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild exon 1970105 1970323 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild exon 1970397 1970491 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild exon 1971002 1971165 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild exon 1971406 1971519 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild exon 1971593 1971738 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild exon 1971812 1971965 . + . gene_id "RvY_00689"; transcript_id "RvY_00689.1"; Scaffold001 rebuild transcript 1972658 1974141 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; gene_name "(1)Mtc(2)mtc"; annotation "(1)Sideroflexin-1(2)putative Sideroflexin-1"; Pfam "[Mtc] Tricarboxylate carrier"; CDD "(1)Tricarboxylate carrier.(2)tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism."; similar_genes "(1)SFXN1_SHEEP(e-value:2.0e-77;bit-score:286.0)(2)SFXN1_SHEEP(e-value:1.7e-42;bit-score:170.0)"; Scaffold001 rebuild exon 1972658 1972899 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; Scaffold001 rebuild exon 1972971 1973098 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; Scaffold001 rebuild exon 1973162 1973247 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; Scaffold001 rebuild exon 1973305 1973479 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; Scaffold001 rebuild exon 1973547 1973720 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; Scaffold001 rebuild exon 1973927 1974141 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.1"; Scaffold001 rebuild transcript 1973287 1974141 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.2"; gene_name "(1)Mtc(2)mtc"; annotation "(1)Sideroflexin-1(2)putative Sideroflexin-1"; Pfam "[Mtc] Tricarboxylate carrier"; CDD "(1)Tricarboxylate carrier.(2)tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism."; similar_genes "(1)SFXN1_SHEEP(e-value:2.0e-77;bit-score:286.0)(2)SFXN1_SHEEP(e-value:1.7e-42;bit-score:170.0)"; Scaffold001 rebuild exon 1973287 1973479 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.2"; Scaffold001 rebuild exon 1973547 1973720 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.2"; Scaffold001 rebuild exon 1973927 1974141 . - . gene_id "RvY_00690"; transcript_id "RvY_00690.2"; Scaffold001 rebuild transcript 1975277 1976785 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; gene_name "K00025"; annotation "(1)Malate dehydrogenase, cytoplasmic(2)putative Malate dehydrogenase, cytoplasmic"; Pfam "[Ldh_1_N] lactate/malate dehydrogenase, NAD binding domain|[Ldh_1_C] lactate/malate dehydrogenase, alpha/beta C-terminal domain"; CDD "Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others."; EC "EC1.1.1.37"; KO "K00025"; similar_genes "(1)MDHC_CHICK(e-value:3.0e-61;bit-score:233.0)(2)MDHC_PIG(e-value:3.0e-44;bit-score:176.0)"; Scaffold001 rebuild exon 1975277 1975489 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1975561 1975851 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1975934 1976232 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1976314 1976370 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1976440 1976479 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1976542 1976584 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1976649 1976725 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild exon 1976783 1976785 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.1"; Scaffold001 rebuild transcript 1975277 1976446 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.2"; gene_name "K00025"; annotation "(1)Malate dehydrogenase, cytoplasmic(2)putative Malate dehydrogenase, cytoplasmic"; Pfam "[Ldh_1_N] lactate/malate dehydrogenase, NAD binding domain|[Ldh_1_C] lactate/malate dehydrogenase, alpha/beta C-terminal domain"; CDD "Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others."; EC "EC1.1.1.37"; KO "K00025"; similar_genes "(1)MDHC_CHICK(e-value:3.0e-61;bit-score:233.0)(2)MDHC_PIG(e-value:3.0e-44;bit-score:176.0)"; Scaffold001 rebuild exon 1975277 1975489 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.2"; Scaffold001 rebuild exon 1975561 1975851 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.2"; Scaffold001 rebuild exon 1975934 1976232 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.2"; Scaffold001 rebuild exon 1976314 1976370 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.2"; Scaffold001 rebuild exon 1976440 1976446 . - . gene_id "RvY_00691"; transcript_id "RvY_00691.2"; Scaffold001 rebuild transcript 1977266 1977952 . + . gene_id "RvY_00692"; transcript_id "RvY_00692.1"; gene_name "RP-S15Ae"; annotation "40S ribosomal protein S15Aa"; Pfam "[Ribosomal_S8] Ribosomal protein S8"; CDD "40S ribosomal protein S15A; Provisional"; KO "K02957"; similar_genes "RS15A_DROME(e-value:5.9e-60;bit-score:228.0)"; Scaffold001 rebuild exon 1977266 1977398 . + . gene_id "RvY_00692"; transcript_id "RvY_00692.1"; Scaffold001 rebuild exon 1977465 1977544 . + . gene_id "RvY_00692"; transcript_id "RvY_00692.1"; Scaffold001 rebuild exon 1977606 1977691 . + . gene_id "RvY_00692"; transcript_id "RvY_00692.1"; Scaffold001 rebuild exon 1977859 1977952 . + . gene_id "RvY_00692"; transcript_id "RvY_00692.1"; Scaffold001 rebuild transcript 1978526 1980111 . + . gene_id "RvY_00693"; transcript_id "RvY_00693.1"; annotation "hypothetical protein."; Pfam "[Hyccin]"; Scaffold001 rebuild exon 1978526 1979325 . + . gene_id "RvY_00693"; transcript_id "RvY_00693.1"; Scaffold001 rebuild exon 1979559 1980111 . + . gene_id "RvY_00693"; transcript_id "RvY_00693.1"; Scaffold001 rebuild transcript 1980592 1983226 . + . gene_id "RvY_00694"; transcript_id "RvY_00694.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1980592 1981335 . + . gene_id "RvY_00694"; transcript_id "RvY_00694.1"; Scaffold001 rebuild exon 1982228 1983226 . + . gene_id "RvY_00694"; transcript_id "RvY_00694.1"; Scaffold001 rebuild transcript 1983562 1987443 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; gene_name "CNGF"; annotation "putative Cyclic nucleotide-gated cation channel alpha-3"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "K05391"; similar_genes "CNGA3_BOVIN(e-value:1.6e-49;bit-score:194.0)"; Scaffold001 rebuild exon 1983562 1984310 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; Scaffold001 rebuild exon 1984588 1984893 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; Scaffold001 rebuild exon 1985159 1985455 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; Scaffold001 rebuild exon 1985853 1985898 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; Scaffold001 rebuild exon 1986121 1986890 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; Scaffold001 rebuild exon 1987140 1987443 . - . gene_id "RvY_00695"; transcript_id "RvY_00695.1"; Scaffold001 rebuild transcript 1987662 1987863 . - . gene_id "RvY_00696"; transcript_id "RvY_00696.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1987662 1987743 . - . gene_id "RvY_00696"; transcript_id "RvY_00696.1"; Scaffold001 rebuild exon 1987838 1987863 . - . gene_id "RvY_00696"; transcript_id "RvY_00696.1"; Scaffold001 rebuild transcript 1988241 1988576 . + . gene_id "RvY_00697"; transcript_id "RvY_00697.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1988241 1988576 . + . gene_id "RvY_00697"; transcript_id "RvY_00697.1"; Scaffold001 rebuild transcript 1994653 1996888 . + . gene_id "RvY_00698"; transcript_id "RvY_00698.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1994653 1994763 . + . gene_id "RvY_00698"; transcript_id "RvY_00698.1"; Scaffold001 rebuild exon 1994846 1994977 . + . gene_id "RvY_00698"; transcript_id "RvY_00698.1"; Scaffold001 rebuild exon 1995040 1995239 . + . gene_id "RvY_00698"; transcript_id "RvY_00698.1"; Scaffold001 rebuild exon 1995431 1996391 . + . gene_id "RvY_00698"; transcript_id "RvY_00698.1"; Scaffold001 rebuild exon 1996493 1996888 . + . gene_id "RvY_00698"; transcript_id "RvY_00698.1"; Scaffold001 rebuild transcript 1996997 1997158 . - . gene_id "RvY_00699"; transcript_id "RvY_00699.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1996997 1997158 . - . gene_id "RvY_00699"; transcript_id "RvY_00699.1"; Scaffold001 rebuild transcript 1997320 1997907 . + . gene_id "RvY_00700"; transcript_id "RvY_00700.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 1997320 1997427 . + . gene_id "RvY_00700"; transcript_id "RvY_00700.1"; Scaffold001 rebuild exon 1997501 1997663 . + . gene_id "RvY_00700"; transcript_id "RvY_00700.1"; Scaffold001 rebuild exon 1997735 1997907 . + . gene_id "RvY_00700"; transcript_id "RvY_00700.1"; Scaffold001 rebuild transcript 2002297 2005268 . + . gene_id "RvY_00701"; transcript_id "RvY_00701.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2002297 2003049 . + . gene_id "RvY_00701"; transcript_id "RvY_00701.1"; Scaffold001 rebuild exon 2003157 2003442 . + . gene_id "RvY_00701"; transcript_id "RvY_00701.1"; Scaffold001 rebuild exon 2003510 2003750 . + . gene_id "RvY_00701"; transcript_id "RvY_00701.1"; Scaffold001 rebuild exon 2003811 2003970 . + . gene_id "RvY_00701"; transcript_id "RvY_00701.1"; Scaffold001 rebuild exon 2004237 2005268 . + . gene_id "RvY_00701"; transcript_id "RvY_00701.1"; Scaffold001 rebuild transcript 2005595 2006310 . - . gene_id "RvY_00702"; transcript_id "RvY_00702.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2005595 2005650 . - . gene_id "RvY_00702"; transcript_id "RvY_00702.1"; Scaffold001 rebuild exon 2005854 2006310 . - . gene_id "RvY_00702"; transcript_id "RvY_00702.1"; Scaffold001 rebuild transcript 2008348 2009510 . + . gene_id "RvY_00703"; transcript_id "RvY_00703.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2008348 2008626 . + . gene_id "RvY_00703"; transcript_id "RvY_00703.1"; Scaffold001 rebuild exon 2008911 2009510 . + . gene_id "RvY_00703"; transcript_id "RvY_00703.1"; Scaffold001 rebuild transcript 2010273 2012057 . + . gene_id "RvY_00704"; transcript_id "RvY_00704.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 2010273 2010291 . + . gene_id "RvY_00704"; transcript_id "RvY_00704.1"; Scaffold001 rebuild exon 2010395 2010716 . + . gene_id "RvY_00704"; transcript_id "RvY_00704.1"; Scaffold001 rebuild exon 2010799 2010875 . + . gene_id "RvY_00704"; transcript_id "RvY_00704.1"; Scaffold001 rebuild exon 2011020 2011120 . + . gene_id "RvY_00704"; transcript_id "RvY_00704.1"; Scaffold001 rebuild exon 2011389 2012057 . + . gene_id "RvY_00704"; transcript_id "RvY_00704.1"; Scaffold001 rebuild transcript 2013427 2015436 . - . gene_id "RvY_00705"; transcript_id "RvY_00705.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2013427 2014014 . - . gene_id "RvY_00705"; transcript_id "RvY_00705.1"; Scaffold001 rebuild exon 2014411 2014654 . - . gene_id "RvY_00705"; transcript_id "RvY_00705.1"; Scaffold001 rebuild exon 2015261 2015436 . - . gene_id "RvY_00705"; transcript_id "RvY_00705.1"; Scaffold001 rebuild transcript 2016621 2016818 . + . gene_id "RvY_00706"; transcript_id "RvY_00706.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2016621 2016818 . + . gene_id "RvY_00706"; transcript_id "RvY_00706.1"; Scaffold001 rebuild transcript 2017185 2018496 . + . gene_id "RvY_00707"; transcript_id "RvY_00707.1"; gene_name "MMD"; annotation "monocyte to macrophage differentiation protein"; Pfam "[HlyIII] Haemolysin-III related"; CDD "channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role."; KO "K11064"; similar_genes "PAQRA_MOUSE(e-value:5.9e-09;bit-score:59.0)"; Scaffold001 rebuild exon 2017185 2017402 . + . gene_id "RvY_00707"; transcript_id "RvY_00707.1"; Scaffold001 rebuild exon 2017658 2017739 . + . gene_id "RvY_00707"; transcript_id "RvY_00707.1"; Scaffold001 rebuild exon 2017813 2018045 . + . gene_id "RvY_00707"; transcript_id "RvY_00707.1"; Scaffold001 rebuild exon 2018124 2018496 . + . gene_id "RvY_00707"; transcript_id "RvY_00707.1"; Scaffold001 rebuild transcript 2020301 2021293 . + . gene_id "RvY_00708"; transcript_id "RvY_00708.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2020301 2020420 . + . gene_id "RvY_00708"; transcript_id "RvY_00708.1"; Scaffold001 rebuild exon 2020500 2020598 . + . gene_id "RvY_00708"; transcript_id "RvY_00708.1"; Scaffold001 rebuild exon 2020823 2021044 . + . gene_id "RvY_00708"; transcript_id "RvY_00708.1"; Scaffold001 rebuild exon 2021177 2021293 . + . gene_id "RvY_00708"; transcript_id "RvY_00708.1"; Scaffold001 rebuild transcript 2021415 2022640 . - . gene_id "RvY_00709"; transcript_id "RvY_00709.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2021415 2021648 . - . gene_id "RvY_00709"; transcript_id "RvY_00709.1"; Scaffold001 rebuild exon 2021716 2021877 . - . gene_id "RvY_00709"; transcript_id "RvY_00709.1"; Scaffold001 rebuild exon 2021970 2022171 . - . gene_id "RvY_00709"; transcript_id "RvY_00709.1"; Scaffold001 rebuild exon 2022234 2022640 . - . gene_id "RvY_00709"; transcript_id "RvY_00709.1"; Scaffold001 rebuild transcript 2024250 2025865 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; similar_genes "CAB32_DROME(e-value:3.7e-17;bit-score:86.0)"; Scaffold001 rebuild exon 2024250 2024361 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2024444 2024526 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2024618 2024707 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2024802 2024888 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2024964 2025020 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2025217 2025285 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2025371 2025426 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2025492 2025537 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild exon 2025608 2025865 . + . gene_id "RvY_00710"; transcript_id "RvY_00710.1"; Scaffold001 rebuild transcript 2026189 2028391 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2026189 2026336 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2026416 2026526 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2026751 2026804 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2026861 2027009 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2027177 2027371 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2027447 2027629 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2027717 2027888 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild exon 2028129 2028391 . - . gene_id "RvY_00711"; transcript_id "RvY_00711.1"; Scaffold001 rebuild transcript 2026889 2027437 . + . gene_id "RvY_00712"; transcript_id "RvY_00712.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2026889 2027117 . + . gene_id "RvY_00712"; transcript_id "RvY_00712.1"; Scaffold001 rebuild exon 2027238 2027437 . + . gene_id "RvY_00712"; transcript_id "RvY_00712.1"; Scaffold001 rebuild transcript 2028947 2029141 . - . gene_id "RvY_00713"; transcript_id "RvY_00713.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2028947 2029141 . - . gene_id "RvY_00713"; transcript_id "RvY_00713.1"; Scaffold001 rebuild transcript 2030035 2033317 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; gene_name "(1,2,3)ACR"; annotation "hypothetical protein."; Pfam "(1,2,4)[Disintegrin]|[ADAM_CR] ADAM cysteine-rich"; CDD "(1,2,3)ADAM Cysteine-Rich Domain."; EC "(1,2,4)EC3.4.24.-"; similar_genes "(1,2,4)ADA28_MOUSE(e-value:6.3e-17;bit-score:85.0)"; Scaffold001 rebuild exon 2030035 2030227 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2030854 2030987 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2031269 2031487 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2031578 2031761 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2032042 2032165 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2032230 2032349 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2032455 2032536 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2032626 2032881 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild exon 2033076 2033317 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.1"; Scaffold001 rebuild transcript 2030035 2033317 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; gene_name "(1,2,3)ACR"; annotation "hypothetical protein."; Pfam "(1,2,4)[Disintegrin]|[ADAM_CR] ADAM cysteine-rich"; CDD "(1,2,3)ADAM Cysteine-Rich Domain."; EC "(1,2,4)EC3.4.24.-"; similar_genes "(1,2,4)ADA28_MOUSE(e-value:6.3e-17;bit-score:85.0)"; Scaffold001 rebuild exon 2030035 2030221 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2030854 2030987 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2031269 2031487 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2031578 2031761 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2032042 2032165 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2032230 2032349 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2032455 2032536 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2032626 2032881 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild exon 2033076 2033317 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.2"; Scaffold001 rebuild transcript 2031459 2033317 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; gene_name "(1,2,3)ACR"; annotation "hypothetical protein."; Pfam "(1,2,4)[Disintegrin]|[ADAM_CR] ADAM cysteine-rich"; CDD "(1,2,3)ADAM Cysteine-Rich Domain."; EC "(1,2,4)EC3.4.24.-"; similar_genes "(1,2,4)ADA28_MOUSE(e-value:6.3e-17;bit-score:85.0)"; Scaffold001 rebuild exon 2031459 2031487 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild exon 2031578 2031750 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild exon 2032042 2032165 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild exon 2032230 2032349 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild exon 2032455 2032536 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild exon 2032626 2032881 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild exon 2033076 2033317 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.3"; Scaffold001 rebuild transcript 2030035 2032456 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; gene_name "(1,2,3)ACR"; annotation "hypothetical protein."; Pfam "(1,2,4)[Disintegrin]|[ADAM_CR] ADAM cysteine-rich"; CDD "(1,2,3)ADAM Cysteine-Rich Domain."; EC "(1,2,4)EC3.4.24.-"; similar_genes "(1,2,4)ADA28_MOUSE(e-value:6.3e-17;bit-score:85.0)"; Scaffold001 rebuild exon 2030035 2030221 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild exon 2030854 2030987 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild exon 2031269 2031487 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild exon 2031578 2031761 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild exon 2032042 2032165 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild exon 2032230 2032351 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild exon 2032455 2032456 . + . gene_id "RvY_00714"; transcript_id "RvY_00714.4"; Scaffold001 rebuild transcript 2033631 2036020 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; gene_name "B41"; annotation "hypothetical protein."; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; Scaffold001 rebuild exon 2033631 2034158 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2034396 2034764 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2034822 2034909 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2034993 2035175 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2035252 2035296 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2035366 2035438 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2035518 2035668 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild exon 2035784 2036020 . - . gene_id "RvY_00715"; transcript_id "RvY_00715.1"; Scaffold001 rebuild transcript 2036778 2037207 . - . gene_id "RvY_00716"; transcript_id "RvY_00716.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2036778 2036918 . - . gene_id "RvY_00716"; transcript_id "RvY_00716.1"; Scaffold001 rebuild exon 2037001 2037207 . - . gene_id "RvY_00716"; transcript_id "RvY_00716.1"; Scaffold001 rebuild transcript 2038124 2040901 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; gene_name "SrmB"; annotation "Putative ATP-dependent RNA helicase me31b"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; similar_genes "DDX6_DROME(e-value:4.3e-73;bit-score:272.0)"; Scaffold001 rebuild exon 2038124 2038330 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2038441 2038515 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2038585 2038614 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2038701 2038845 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2038952 2039095 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2039215 2039342 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2039580 2039702 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2039806 2039947 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2040090 2040254 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2040352 2040599 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild exon 2040716 2040901 . + . gene_id "RvY_00717"; transcript_id "RvY_00717.1"; Scaffold001 rebuild transcript 2041252 2041473 . - . gene_id "RvY_00718"; transcript_id "RvY_00718.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2041252 2041473 . - . gene_id "RvY_00718"; transcript_id "RvY_00718.1"; Scaffold001 rebuild transcript 2041260 2041484 . + . gene_id "RvY_00719"; transcript_id "RvY_00719.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2041260 2041484 . + . gene_id "RvY_00719"; transcript_id "RvY_00719.1"; Scaffold001 framed transcript 2042312 2042572 . + . gene_id "RvY_00720"; transcript_id "RvY_00720.1"; annotation "hypothetical protein."; Scaffold001 framed exon 2042312 2042572 . + . gene_id "RvY_00720"; transcript_id "RvY_00720.1"; Scaffold001 rebuild transcript 2043382 2043872 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2043382 2043606 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.1"; Scaffold001 rebuild exon 2043677 2043775 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.1"; Scaffold001 rebuild exon 2043849 2043872 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.1"; Scaffold001 rebuild transcript 2043430 2043872 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2043430 2043606 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.2"; Scaffold001 rebuild exon 2043677 2043775 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.2"; Scaffold001 rebuild exon 2043849 2043872 . + . gene_id "RvY_00721"; transcript_id "RvY_00721.2"; Scaffold001 rebuild transcript 2043752 2044715 . - . gene_id "RvY_00722"; transcript_id "RvY_00722.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2043752 2044229 . - . gene_id "RvY_00722"; transcript_id "RvY_00722.1"; Scaffold001 rebuild exon 2044466 2044529 . - . gene_id "RvY_00722"; transcript_id "RvY_00722.1"; Scaffold001 rebuild exon 2044625 2044715 . - . gene_id "RvY_00722"; transcript_id "RvY_00722.1"; Scaffold001 rebuild transcript 2045838 2051649 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; gene_name "(1,3)PBP1_NPR_GC_like(2)CYCc"; annotation "putative Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family.(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,2)ANPRA_MOUSE(e-value:7.0e-48;bit-score:188.0)(3)ANPRA_HUMAN(e-value:8.9e-44;bit-score:174.0)"; Scaffold001 rebuild exon 2045838 2046450 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2046724 2047110 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2047172 2047215 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2047421 2047537 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2048126 2048263 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2048368 2048598 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2048667 2048799 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2048905 2049001 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2049077 2049188 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2049306 2049482 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2049554 2049739 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2050019 2050256 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2050329 2050507 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2050580 2050719 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2050784 2050882 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2050970 2051044 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2051128 2051245 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2051320 2051374 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild exon 2051438 2051649 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.1"; Scaffold001 rebuild transcript 2046096 2052029 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; gene_name "(1,3)PBP1_NPR_GC_like(2)CYCc"; annotation "putative Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family.(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,2)ANPRA_MOUSE(e-value:7.0e-48;bit-score:188.0)(3)ANPRA_HUMAN(e-value:8.9e-44;bit-score:174.0)"; Scaffold001 rebuild exon 2046096 2046450 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2046724 2047110 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2047172 2047215 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2047421 2047537 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2048126 2048263 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2048368 2048598 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2048667 2048799 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2048905 2049001 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2049077 2049188 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2049306 2049482 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2049554 2049739 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2050019 2050256 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2050329 2050507 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2050580 2050719 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2050784 2050882 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2050970 2051044 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2051128 2051245 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2051320 2051374 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2051438 2051572 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2051671 2051704 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2051772 2051913 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild exon 2051985 2052029 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.2"; Scaffold001 rebuild transcript 2045838 2051394 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; gene_name "(1,3)PBP1_NPR_GC_like(2)CYCc"; annotation "putative Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family.(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,2)ANPRA_MOUSE(e-value:7.0e-48;bit-score:188.0)(3)ANPRA_HUMAN(e-value:8.9e-44;bit-score:174.0)"; Scaffold001 rebuild exon 2045838 2046450 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2046724 2047110 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2047172 2047215 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2047421 2047537 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2048126 2048263 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2048368 2048598 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2048667 2048799 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2048905 2049001 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2049077 2049188 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2049306 2049482 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2049554 2049739 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2050019 2050256 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2050329 2050507 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2050580 2050719 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2050784 2050882 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2050970 2051044 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2051128 2051245 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild exon 2051320 2051394 . + . gene_id "RvY_00723"; transcript_id "RvY_00723.3"; Scaffold001 rebuild transcript 2052079 2053193 . - . gene_id "RvY_00724"; transcript_id "RvY_00724.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2052079 2052409 . - . gene_id "RvY_00724"; transcript_id "RvY_00724.1"; Scaffold001 rebuild exon 2052698 2052784 . - . gene_id "RvY_00724"; transcript_id "RvY_00724.1"; Scaffold001 rebuild exon 2052790 2053193 . - . gene_id "RvY_00724"; transcript_id "RvY_00724.1"; Scaffold001 rebuild transcript 2054139 2055594 . + . gene_id "RvY_00725"; transcript_id "RvY_00725.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2054139 2054181 . + . gene_id "RvY_00725"; transcript_id "RvY_00725.1"; Scaffold001 rebuild exon 2054276 2055594 . + . gene_id "RvY_00725"; transcript_id "RvY_00725.1"; Scaffold001 rebuild transcript 2057305 2057951 . + . gene_id "RvY_00726"; transcript_id "RvY_00726.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2057305 2057690 . + . gene_id "RvY_00726"; transcript_id "RvY_00726.1"; Scaffold001 rebuild exon 2057915 2057951 . + . gene_id "RvY_00726"; transcript_id "RvY_00726.1"; Scaffold001 rebuild transcript 2061155 2064566 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; gene_name "CPE"; annotation "putative Carboxypeptidase E"; Pfam "[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|[Peptidase_M14] Zinc carboxypeptidase"; CDD "Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically Scaffold001 rebuild exon 2061155 2061380 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild exon 2061780 2062135 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild exon 2062310 2062596 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild exon 2062903 2063059 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild exon 2063289 2063415 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild exon 2063742 2063946 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild exon 2064209 2064566 . + . gene_id "RvY_00727"; transcript_id "RvY_00727.1"; Scaffold001 rebuild transcript 2065022 2065420 . - . gene_id "RvY_00728"; transcript_id "RvY_00728.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2065022 2065420 . - . gene_id "RvY_00728"; transcript_id "RvY_00728.1"; Scaffold001 rebuild transcript 2066918 2067804 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2066918 2066941 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.1"; Scaffold001 rebuild exon 2067194 2067301 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.1"; Scaffold001 rebuild exon 2067376 2067485 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.1"; Scaffold001 rebuild exon 2067552 2067804 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.1"; Scaffold001 rebuild transcript 2066696 2067428 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2066696 2066754 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.2"; Scaffold001 rebuild exon 2066835 2066941 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.2"; Scaffold001 rebuild exon 2067194 2067301 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.2"; Scaffold001 rebuild exon 2067376 2067428 . - . gene_id "RvY_00729"; transcript_id "RvY_00729.2"; Scaffold001 rebuild transcript 2067998 2069159 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2067998 2068027 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.1"; Scaffold001 rebuild exon 2068115 2068225 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.1"; Scaffold001 rebuild exon 2068440 2069159 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.1"; Scaffold001 rebuild transcript 2068868 2069876 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2068868 2069084 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.2"; Scaffold001 rebuild exon 2069308 2069876 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.2"; Scaffold001 rebuild transcript 2069169 2069876 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2069169 2069876 . - . gene_id "RvY_00730"; transcript_id "RvY_00730.3"; Scaffold001 rebuild transcript 2071622 2074594 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2071622 2071633 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2071786 2071844 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2071900 2072170 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2072398 2073078 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2073288 2073674 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2073829 2074146 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2074215 2074323 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2074390 2074448 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild exon 2074526 2074594 . - . gene_id "RvY_00731"; transcript_id "RvY_00731.1"; Scaffold001 rebuild transcript 2074974 2077959 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; annotation "hypothetical protein."; Pfam "[COG6] Conserved oligomeric complex COG6"; Scaffold001 rebuild exon 2074974 2075246 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2075341 2075484 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2075593 2075723 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2075796 2075916 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2075985 2076321 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2076443 2076734 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2076810 2077251 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2077323 2077427 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2077535 2077573 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2077681 2077760 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild exon 2077827 2077959 . + . gene_id "RvY_00732"; transcript_id "RvY_00732.1"; Scaffold001 rebuild transcript 2078663 2079160 . - . gene_id "RvY_00733"; transcript_id "RvY_00733.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2078663 2078695 . - . gene_id "RvY_00733"; transcript_id "RvY_00733.1"; Scaffold001 rebuild exon 2079008 2079160 . - . gene_id "RvY_00733"; transcript_id "RvY_00733.1"; Scaffold001 rebuild transcript 2079209 2085900 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; gene_name "PBP1_Speract_GC_like"; annotation "Retinal guanylyl cyclase 1"; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model."; EC "EC4.6.1.2"; similar_genes "GUC2D_CANFA(e-value:8.6e-74;bit-score:274.0)"; Scaffold001 rebuild exon 2079209 2079589 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2080923 2081226 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2081500 2082000 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2082327 2082484 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2082571 2083017 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2083101 2083205 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2083297 2083991 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2084063 2084211 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2084292 2084316 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2084516 2084556 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2084636 2084803 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2084878 2084911 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild exon 2084991 2085900 . + . gene_id "RvY_00734"; transcript_id "RvY_00734.1"; Scaffold001 rebuild transcript 2086171 2086803 . - . gene_id "RvY_00735"; transcript_id "RvY_00735.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2086171 2086509 . - . gene_id "RvY_00735"; transcript_id "RvY_00735.1"; Scaffold001 rebuild exon 2086597 2086803 . - . gene_id "RvY_00735"; transcript_id "RvY_00735.1"; Scaffold001 rebuild transcript 2087494 2090069 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; gene_name "K01301"; annotation "glutamate carboxypeptidase II [EC:3.4.17.21]"; Pfam "[Peptidase_M28] Peptidase family M28"; CDD "PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower efficiency than does GCPII; NAALADase L is not able to hydrolyze alpha-NAAG. The GCPII PA domain (referred to as the apical domain) participates in substrate binding and may act as a protein-protein interaction domain."; EC "EC3.4.17.21"; KO "K01301"; similar_genes "FOLH1_RAT(e-value:4.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 2087494 2087786 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2087888 2088164 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2088222 2088543 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2088623 2088812 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2088886 2088971 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2089035 2089069 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2089287 2089317 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2089379 2089432 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2089535 2089752 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild exon 2089833 2090069 . + . gene_id "RvY_00736"; transcript_id "RvY_00736.1"; Scaffold001 rebuild transcript 2090327 2091088 . + . gene_id "RvY_00737"; transcript_id "RvY_00737.1"; annotation "hypothetical protein."; Pfam "[TFR_dimer] Transferrin receptor-like dimerisation domain"; EC "EC3.4.17.21"; similar_genes "FOLH1_RAT(e-value:2.0e-11;bit-score:67.0)"; Scaffold001 rebuild exon 2090327 2090507 . + . gene_id "RvY_00737"; transcript_id "RvY_00737.1"; Scaffold001 rebuild exon 2090612 2090705 . + . gene_id "RvY_00737"; transcript_id "RvY_00737.1"; Scaffold001 rebuild exon 2090767 2091088 . + . gene_id "RvY_00737"; transcript_id "RvY_00737.1"; Scaffold001 rebuild transcript 2091273 2093435 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "SER1_GALME(e-value:1.7e-19;bit-score:94.0)"; Scaffold001 rebuild exon 2091273 2091865 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild exon 2092038 2092124 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild exon 2092188 2092678 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild exon 2092744 2092773 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild exon 2092849 2092933 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild exon 2093009 2093234 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild exon 2093376 2093435 . - . gene_id "RvY_00738"; transcript_id "RvY_00738.1"; Scaffold001 rebuild transcript 2094174 2096083 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2094174 2094656 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2094851 2095235 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2095323 2095378 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2095452 2095503 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2095568 2095606 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2095694 2095763 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2095831 2095963 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild exon 2096030 2096083 . - . gene_id "RvY_00739"; transcript_id "RvY_00739.1"; Scaffold001 rebuild transcript 2095669 2098403 . + . gene_id "RvY_00740"; transcript_id "RvY_00740.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2095669 2095776 . + . gene_id "RvY_00740"; transcript_id "RvY_00740.1"; Scaffold001 rebuild exon 2097609 2097788 . + . gene_id "RvY_00740"; transcript_id "RvY_00740.1"; Scaffold001 rebuild exon 2097854 2097920 . + . gene_id "RvY_00740"; transcript_id "RvY_00740.1"; Scaffold001 rebuild exon 2098135 2098403 . + . gene_id "RvY_00740"; transcript_id "RvY_00740.1"; Scaffold001 rebuild transcript 2098492 2098722 . + . gene_id "RvY_00741"; transcript_id "RvY_00741.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2098492 2098722 . + . gene_id "RvY_00741"; transcript_id "RvY_00741.1"; Scaffold001 rebuild transcript 2099141 2100716 . - . gene_id "RvY_00742"; transcript_id "RvY_00742.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2099141 2100367 . - . gene_id "RvY_00742"; transcript_id "RvY_00742.1"; Scaffold001 rebuild exon 2100483 2100716 . - . gene_id "RvY_00742"; transcript_id "RvY_00742.1"; Scaffold001 rebuild transcript 2103511 2108539 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; annotation "hypothetical protein."; Pfam "[TUDOR] Tudor domain"; Scaffold001 rebuild exon 2103511 2103648 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2103724 2103892 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2103988 2104254 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2104328 2104585 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2104648 2104941 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2105022 2105271 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2105334 2105534 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2105838 2106339 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2107142 2107721 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2107904 2108005 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2108097 2108270 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild exon 2108379 2108539 . + . gene_id "RvY_00743"; transcript_id "RvY_00743.1"; Scaffold001 rebuild transcript 2108323 2108592 . - . gene_id "RvY_00744"; transcript_id "RvY_00744.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2108323 2108592 . - . gene_id "RvY_00744"; transcript_id "RvY_00744.1"; Scaffold001 rebuild transcript 2109044 2121787 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Bravo_FIGEY] C-terminal domain of Fibronectin type III|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; similar_genes "SDK1_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold001 rebuild exon 2109044 2109376 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2109555 2109976 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2110161 2110706 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2110773 2111213 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2111391 2111950 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2112116 2112512 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2112709 2113101 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2113323 2113569 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2113692 2113786 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2113906 2113993 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2114415 2114611 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2114692 2115174 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2115367 2115513 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2115600 2115834 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2116213 2116607 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2116895 2117179 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2117316 2117477 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2117556 2117702 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2118155 2118376 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2118524 2118595 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2119264 2119404 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2119498 2119565 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2119696 2119807 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2120130 2120426 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2120498 2120806 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild exon 2121688 2121787 . - . gene_id "RvY_00745"; transcript_id "RvY_00745.1"; Scaffold001 rebuild transcript 2124451 2125038 . + . gene_id "RvY_00746"; transcript_id "RvY_00746.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2124451 2124719 . + . gene_id "RvY_00746"; transcript_id "RvY_00746.1"; Scaffold001 rebuild exon 2124789 2125038 . + . gene_id "RvY_00746"; transcript_id "RvY_00746.1"; Scaffold001 rebuild transcript 2126068 2131221 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; annotation "putative Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; EC "EC3.2.1.113"; similar_genes "MA1A2_HUMAN(e-value:1.4e-35;bit-score:147.0)"; Scaffold001 rebuild exon 2126068 2126220 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2126301 2126435 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2126524 2126610 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2126721 2126942 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2127173 2127253 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2127340 2127434 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2127509 2128071 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2128600 2128769 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2130439 2130643 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild exon 2131007 2131221 . + . gene_id "RvY_00747"; transcript_id "RvY_00747.1"; Scaffold001 rebuild transcript 2132679 2136653 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2132679 2132868 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; Scaffold001 rebuild exon 2133117 2133526 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; Scaffold001 rebuild exon 2133953 2134420 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; Scaffold001 rebuild exon 2134676 2135253 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; Scaffold001 rebuild exon 2135521 2135804 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; Scaffold001 rebuild exon 2135917 2136653 . + . gene_id "RvY_00748"; transcript_id "RvY_00748.1"; Scaffold001 rebuild transcript 2137621 2138601 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; gene_name "GM2-AP"; annotation "hypothetical protein."; CDD "GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family."; Scaffold001 rebuild exon 2137621 2137740 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; Scaffold001 rebuild exon 2137800 2137914 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; Scaffold001 rebuild exon 2137986 2138047 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; Scaffold001 rebuild exon 2138125 2138176 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; Scaffold001 rebuild exon 2138245 2138357 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; Scaffold001 rebuild exon 2138428 2138601 . + . gene_id "RvY_00749"; transcript_id "RvY_00749.1"; Scaffold001 rebuild transcript 2141239 2143891 . - . gene_id "RvY_00750"; transcript_id "RvY_00750.1"; gene_name "SCRT"; annotation "Transcriptional repressor scratch 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09219"; similar_genes "SCRT1_MOUSE(e-value:3.0e-61;bit-score:233.0)"; Scaffold001 rebuild exon 2141239 2141511 . - . gene_id "RvY_00750"; transcript_id "RvY_00750.1"; Scaffold001 rebuild exon 2142164 2142732 . - . gene_id "RvY_00750"; transcript_id "RvY_00750.1"; Scaffold001 rebuild exon 2143268 2143456 . - . gene_id "RvY_00750"; transcript_id "RvY_00750.1"; Scaffold001 rebuild exon 2143651 2143891 . - . gene_id "RvY_00750"; transcript_id "RvY_00750.1"; Scaffold001 rebuild transcript 2148980 2150443 . - . gene_id "RvY_00751"; transcript_id "RvY_00751.1"; annotation "hypothetical protein."; similar_genes "Y8359_ORYSI(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 2148980 2149196 . - . gene_id "RvY_00751"; transcript_id "RvY_00751.1"; Scaffold001 rebuild exon 2149255 2149402 . - . gene_id "RvY_00751"; transcript_id "RvY_00751.1"; Scaffold001 rebuild exon 2149602 2149814 . - . gene_id "RvY_00751"; transcript_id "RvY_00751.1"; Scaffold001 rebuild exon 2149877 2149973 . - . gene_id "RvY_00751"; transcript_id "RvY_00751.1"; Scaffold001 rebuild exon 2150117 2150443 . - . gene_id "RvY_00751"; transcript_id "RvY_00751.1"; Scaffold001 rebuild transcript 2151510 2152062 . + . gene_id "RvY_00752"; transcript_id "RvY_00752.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2151510 2151815 . + . gene_id "RvY_00752"; transcript_id "RvY_00752.1"; Scaffold001 rebuild exon 2151874 2152062 . + . gene_id "RvY_00752"; transcript_id "RvY_00752.1"; Scaffold001 rebuild transcript 2152108 2152377 . + . gene_id "RvY_00753"; transcript_id "RvY_00753.1"; annotation "hypothetical protein."; Pfam "[tRNA_int_endo] tRNA intron endonuclease, catalytic C-terminal domain"; Scaffold001 rebuild exon 2152108 2152222 . + . gene_id "RvY_00753"; transcript_id "RvY_00753.1"; Scaffold001 rebuild exon 2152295 2152377 . + . gene_id "RvY_00753"; transcript_id "RvY_00753.1"; Scaffold001 rebuild transcript 2153755 2155542 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; gene_name "(1)phhA"; annotation "(1)Protein henna(2)hypothetical protein."; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "(1)phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PMID:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered."; EC "(1)EC1.14.16.1"; KO "(1)K00500"; similar_genes "(1)PH4H_DROME(e-value:4.2e-122;bit-score:435.0)"; Scaffold001 rebuild exon 2153755 2153940 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2154001 2154068 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2154136 2154186 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2154400 2154545 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2154649 2154717 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2154781 2154870 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2154952 2155055 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2155115 2155210 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild exon 2155453 2155542 . + . gene_id "RvY_00754"; transcript_id "RvY_00754.1"; Scaffold001 rebuild transcript 2157895 2159538 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; gene_name "PTEN"; annotation "phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase [EC:3.1.3.67]"; Pfam "[PTEN_C2] C2 domain of PTEN tumour-suppressor protein|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]"; EC "EC3.1.3.67"; KO "K01110"; similar_genes "PTEN_MOUSE(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 2157895 2158000 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild exon 2158113 2158215 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild exon 2158310 2158464 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild exon 2158639 2158769 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild exon 2158864 2159196 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild exon 2159266 2159424 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild exon 2159506 2159538 . + . gene_id "RvY_00755"; transcript_id "RvY_00755.1"; Scaffold001 rebuild transcript 2160165 2161134 . + . gene_id "RvY_00756"; transcript_id "RvY_00756.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2160165 2160362 . + . gene_id "RvY_00756"; transcript_id "RvY_00756.1"; Scaffold001 rebuild exon 2160937 2161134 . + . gene_id "RvY_00756"; transcript_id "RvY_00756.1"; Scaffold001 rebuild transcript 2162331 2163172 . - . gene_id "RvY_00757"; transcript_id "RvY_00757.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2162331 2162557 . - . gene_id "RvY_00757"; transcript_id "RvY_00757.1"; Scaffold001 rebuild exon 2162792 2163007 . - . gene_id "RvY_00757"; transcript_id "RvY_00757.1"; Scaffold001 rebuild exon 2163109 2163172 . - . gene_id "RvY_00757"; transcript_id "RvY_00757.1"; Scaffold001 rebuild transcript 2163303 2163494 . + . gene_id "RvY_00758"; transcript_id "RvY_00758.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2163303 2163494 . + . gene_id "RvY_00758"; transcript_id "RvY_00758.1"; Scaffold001 rebuild transcript 2164183 2165348 . - . gene_id "RvY_00759"; transcript_id "RvY_00759.1"; annotation "hypothetical protein."; Pfam "[LRAT] Lecithin retinol acyltransferase"; Scaffold001 rebuild exon 2164183 2164350 . - . gene_id "RvY_00759"; transcript_id "RvY_00759.1"; Scaffold001 rebuild exon 2164423 2165171 . - . gene_id "RvY_00759"; transcript_id "RvY_00759.1"; Scaffold001 rebuild exon 2165279 2165348 . - . gene_id "RvY_00759"; transcript_id "RvY_00759.1"; Scaffold001 rebuild transcript 2165781 2166828 . + . gene_id "RvY_00760"; transcript_id "RvY_00760.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2165781 2166117 . + . gene_id "RvY_00760"; transcript_id "RvY_00760.1"; Scaffold001 rebuild exon 2166200 2166609 . + . gene_id "RvY_00760"; transcript_id "RvY_00760.1"; Scaffold001 rebuild exon 2166697 2166828 . + . gene_id "RvY_00760"; transcript_id "RvY_00760.1"; Scaffold001 rebuild transcript 2167127 2167558 . - . gene_id "RvY_00761"; transcript_id "RvY_00761.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2167127 2167253 . - . gene_id "RvY_00761"; transcript_id "RvY_00761.1"; Scaffold001 rebuild exon 2167338 2167558 . - . gene_id "RvY_00761"; transcript_id "RvY_00761.1"; Scaffold001 rebuild transcript 2167803 2168166 . - . gene_id "RvY_00762"; transcript_id "RvY_00762.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2167803 2167970 . - . gene_id "RvY_00762"; transcript_id "RvY_00762.1"; Scaffold001 rebuild exon 2168113 2168166 . - . gene_id "RvY_00762"; transcript_id "RvY_00762.1"; Scaffold001 rebuild transcript 2168169 2169327 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.1"; gene_name "PRK09297"; annotation "hypothetical protein."; Pfam "[tRNA_int_endo] tRNA intron endonuclease, catalytic C-terminal domain"; CDD "tRNA-splicing endonuclease subunit alpha; Reviewed"; Scaffold001 rebuild exon 2168169 2168251 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.1"; Scaffold001 rebuild exon 2168324 2168672 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.1"; Scaffold001 rebuild exon 2168731 2169327 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.1"; Scaffold001 rebuild transcript 2168169 2169161 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.2"; gene_name "PRK09297"; annotation "hypothetical protein."; Pfam "[tRNA_int_endo] tRNA intron endonuclease, catalytic C-terminal domain"; CDD "tRNA-splicing endonuclease subunit alpha; Reviewed"; Scaffold001 rebuild exon 2168169 2168251 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.2"; Scaffold001 rebuild exon 2168324 2168672 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.2"; Scaffold001 rebuild exon 2168731 2169075 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.2"; Scaffold001 rebuild exon 2169141 2169161 . - . gene_id "RvY_00763"; transcript_id "RvY_00763.2"; Scaffold001 rebuild transcript 2170850 2171176 . - . gene_id "RvY_00764"; transcript_id "RvY_00764.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2170850 2171176 . - . gene_id "RvY_00764"; transcript_id "RvY_00764.1"; Scaffold001 rebuild transcript 2173622 2174439 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2173622 2174057 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.1"; Scaffold001 rebuild exon 2174198 2174439 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.1"; Scaffold001 rebuild transcript 2173622 2174439 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2173622 2173679 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.2"; Scaffold001 rebuild exon 2173755 2174057 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.2"; Scaffold001 rebuild exon 2174198 2174439 . + . gene_id "RvY_00765"; transcript_id "RvY_00765.2"; Scaffold001 rebuild transcript 2179291 2179542 . - . gene_id "RvY_00766"; transcript_id "RvY_00766.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2179291 2179542 . - . gene_id "RvY_00766"; transcript_id "RvY_00766.1"; Scaffold001 rebuild transcript 2179910 2180629 . - . gene_id "RvY_00767"; transcript_id "RvY_00767.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2179910 2179931 . - . gene_id "RvY_00767"; transcript_id "RvY_00767.1"; Scaffold001 rebuild exon 2180508 2180629 . - . gene_id "RvY_00767"; transcript_id "RvY_00767.1"; Scaffold001 rebuild transcript 2190418 2192867 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; gene_name "atoB"; annotation "Acetyl-CoA acetyltransferase, mitochondrial"; Pfam "[Thiolase_C] Thiolase, C-terminal domain|[Thiolase_N] Thiolase, N-terminal domain"; CDD "Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways."; EC "EC2.3.1.9"; KO "K00626"; similar_genes "THIL_XENTR(e-value:1.6e-66;bit-score:250.0)"; Scaffold001 rebuild exon 2190418 2190453 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2190545 2190595 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2190692 2190809 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2190937 2191032 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2191117 2191217 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2191312 2191404 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2191471 2191521 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2191604 2191705 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2191796 2191844 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2191908 2192003 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2192063 2192176 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2192261 2192325 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2192433 2192590 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2192670 2192749 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild exon 2192827 2192867 . + . gene_id "RvY_00769"; transcript_id "RvY_00769.1"; Scaffold001 rebuild transcript 2193200 2194921 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; gene_name "B_lectin"; annotation "hypothetical protein."; Pfam "[B_lectin] D-mannose binding lectin"; CDD "Bulb-type mannose-specific lectin."; Scaffold001 rebuild exon 2193200 2193283 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2193370 2193447 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2193536 2193596 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2193778 2193827 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2193913 2193992 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2194173 2194212 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2194301 2194393 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2194470 2194513 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2194569 2194614 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2194688 2194818 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild exon 2194909 2194921 . - . gene_id "RvY_00770"; transcript_id "RvY_00770.1"; Scaffold001 rebuild transcript 2194957 2195289 . + . gene_id "RvY_00771"; transcript_id "RvY_00771.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2194957 2195289 . + . gene_id "RvY_00771"; transcript_id "RvY_00771.1"; Scaffold001 rebuild transcript 2195801 2196448 . - . gene_id "RvY_00772"; transcript_id "RvY_00772.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2195801 2196448 . - . gene_id "RvY_00772"; transcript_id "RvY_00772.1"; Scaffold001 rebuild transcript 2198420 2200900 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold001 rebuild exon 2198420 2198461 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2198546 2198687 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2198887 2199193 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2199273 2199411 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2199618 2199929 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2200016 2200183 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2200402 2200539 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild exon 2200607 2200900 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.1"; Scaffold001 rebuild transcript 2199630 2201270 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold001 rebuild exon 2199630 2199929 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild exon 2200016 2200183 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild exon 2200402 2200539 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild exon 2200607 2200765 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild exon 2200828 2200964 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild exon 2201036 2201097 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild exon 2201173 2201270 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.2"; Scaffold001 rebuild transcript 2199630 2201245 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold001 rebuild exon 2199630 2199929 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild exon 2200016 2200183 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild exon 2200402 2200539 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild exon 2200607 2200765 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild exon 2200828 2200964 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild exon 2201036 2201074 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild exon 2201173 2201245 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.3"; Scaffold001 rebuild transcript 2198177 2199432 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.4"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold001 rebuild exon 2198177 2198461 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.4"; Scaffold001 rebuild exon 2198546 2198687 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.4"; Scaffold001 rebuild exon 2198887 2199193 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.4"; Scaffold001 rebuild exon 2199273 2199432 . + . gene_id "RvY_00773"; transcript_id "RvY_00773.4"; Scaffold001 rebuild transcript 2203067 2205668 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain|[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; Scaffold001 rebuild exon 2203067 2203513 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; Scaffold001 rebuild exon 2203753 2203999 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; Scaffold001 rebuild exon 2204057 2204666 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; Scaffold001 rebuild exon 2204746 2204849 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; Scaffold001 rebuild exon 2204960 2205094 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; Scaffold001 rebuild exon 2205412 2205668 . + . gene_id "RvY_00774"; transcript_id "RvY_00774.1"; Scaffold001 rebuild transcript 2206922 2207359 . + . gene_id "RvY_00775"; transcript_id "RvY_00775.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2206922 2207359 . + . gene_id "RvY_00775"; transcript_id "RvY_00775.1"; Scaffold001 rebuild transcript 2207511 2210307 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[Vac14_Fab1_bd] Vacuolar 14 Fab1-binding region"; Scaffold001 rebuild exon 2207511 2207881 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; Scaffold001 rebuild exon 2208093 2208376 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; Scaffold001 rebuild exon 2208444 2208778 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; Scaffold001 rebuild exon 2208970 2209386 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; Scaffold001 rebuild exon 2209517 2209886 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; Scaffold001 rebuild exon 2209982 2210307 . - . gene_id "RvY_00776"; transcript_id "RvY_00776.1"; Scaffold001 rebuild transcript 2211167 2213473 . + . gene_id "RvY_00777"; transcript_id "RvY_00777.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2211167 2211199 . + . gene_id "RvY_00777"; transcript_id "RvY_00777.1"; Scaffold001 rebuild exon 2211282 2211809 . + . gene_id "RvY_00777"; transcript_id "RvY_00777.1"; Scaffold001 rebuild exon 2211890 2213473 . + . gene_id "RvY_00777"; transcript_id "RvY_00777.1"; Scaffold001 rebuild transcript 2213629 2214629 . + . gene_id "RvY_00778"; transcript_id "RvY_00778.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2213629 2213716 . + . gene_id "RvY_00778"; transcript_id "RvY_00778.1"; Scaffold001 rebuild exon 2214406 2214629 . + . gene_id "RvY_00778"; transcript_id "RvY_00778.1"; Scaffold001 rebuild transcript 2216801 2217178 . + . gene_id "RvY_00779"; transcript_id "RvY_00779.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2216801 2217178 . + . gene_id "RvY_00779"; transcript_id "RvY_00779.1"; Scaffold001 rebuild transcript 2219449 2220382 . - . gene_id "RvY_00780"; transcript_id "RvY_00780.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 2219449 2219612 . - . gene_id "RvY_00780"; transcript_id "RvY_00780.1"; Scaffold001 rebuild exon 2219666 2219795 . - . gene_id "RvY_00780"; transcript_id "RvY_00780.1"; Scaffold001 rebuild exon 2220257 2220382 . - . gene_id "RvY_00780"; transcript_id "RvY_00780.1"; Scaffold001 rebuild transcript 2224063 2225803 . + . gene_id "RvY_00781"; transcript_id "RvY_00781.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold001 rebuild exon 2224063 2224428 . + . gene_id "RvY_00781"; transcript_id "RvY_00781.1"; Scaffold001 rebuild exon 2224570 2224821 . + . gene_id "RvY_00781"; transcript_id "RvY_00781.1"; Scaffold001 rebuild exon 2224877 2225105 . + . gene_id "RvY_00781"; transcript_id "RvY_00781.1"; Scaffold001 rebuild exon 2225174 2225415 . + . gene_id "RvY_00781"; transcript_id "RvY_00781.1"; Scaffold001 rebuild exon 2225474 2225803 . + . gene_id "RvY_00781"; transcript_id "RvY_00781.1"; Scaffold001 rebuild transcript 2226072 2227940 . - . gene_id "RvY_00782"; transcript_id "RvY_00782.1"; gene_name "UAP1"; annotation "UDP-N-acetylhexosamine pyrophosphorylase-like protein 1"; Pfam "[UDPGP] UTP--glucose-1-phosphate uridylyltransferase"; CDD "UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase."; EC "EC2.7.7.-|EC2.7.7.23"; KO "K00972"; similar_genes "UAP1L_XENTR(e-value:1.6e-70;bit-score:263.0)"; Scaffold001 rebuild exon 2226072 2226668 . - . gene_id "RvY_00782"; transcript_id "RvY_00782.1"; Scaffold001 rebuild exon 2226880 2227451 . - . gene_id "RvY_00782"; transcript_id "RvY_00782.1"; Scaffold001 rebuild exon 2227604 2227940 . - . gene_id "RvY_00782"; transcript_id "RvY_00782.1"; Scaffold001 rebuild transcript 2228754 2229680 . + . gene_id "RvY_00783"; transcript_id "RvY_00783.1"; gene_name "ARL2"; annotation "ADP-ribosylation factor-like protein 2"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[G-alpha] G-protein alpha subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis."; KO "K07943"; similar_genes "ARL2_HUMAN(e-value:4.3e-71;bit-score:265.0)"; Scaffold001 rebuild exon 2228754 2228818 . + . gene_id "RvY_00783"; transcript_id "RvY_00783.1"; Scaffold001 rebuild exon 2228887 2228997 . + . gene_id "RvY_00783"; transcript_id "RvY_00783.1"; Scaffold001 rebuild exon 2229098 2229260 . + . gene_id "RvY_00783"; transcript_id "RvY_00783.1"; Scaffold001 rebuild exon 2229334 2229414 . + . gene_id "RvY_00783"; transcript_id "RvY_00783.1"; Scaffold001 rebuild exon 2229540 2229680 . + . gene_id "RvY_00783"; transcript_id "RvY_00783.1"; Scaffold001 rebuild transcript 2229932 2231737 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; gene_name "K10836"; annotation "putative 39S ribosomal protein L45, mitochondrial"; Pfam "[Tim44] Tim44-like domain"; KO "K10836"; similar_genes "RM45_BOVIN(e-value:7.5e-39;bit-score:158.0)"; Scaffold001 rebuild exon 2229932 2230243 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; Scaffold001 rebuild exon 2230715 2230864 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; Scaffold001 rebuild exon 2230951 2230999 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; Scaffold001 rebuild exon 2231074 2231290 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; Scaffold001 rebuild exon 2231392 2231533 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; Scaffold001 rebuild exon 2231606 2231737 . - . gene_id "RvY_00784"; transcript_id "RvY_00784.1"; Scaffold001 rebuild transcript 2233317 2233666 . - . gene_id "RvY_00785"; transcript_id "RvY_00785.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2233317 2233487 . - . gene_id "RvY_00785"; transcript_id "RvY_00785.1"; Scaffold001 rebuild exon 2233601 2233666 . - . gene_id "RvY_00785"; transcript_id "RvY_00785.1"; Scaffold001 rebuild transcript 2233677 2234178 . - . gene_id "RvY_00786"; transcript_id "RvY_00786.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2233677 2234086 . - . gene_id "RvY_00786"; transcript_id "RvY_00786.1"; Scaffold001 rebuild exon 2234163 2234178 . - . gene_id "RvY_00786"; transcript_id "RvY_00786.1"; Scaffold001 rebuild transcript 2235043 2236159 . + . gene_id "RvY_00787"; transcript_id "RvY_00787.1"; gene_name "PSMA2"; annotation "Proteasome subunit alpha type-2"; Pfam "[Proteasome_A_N] Proteasome subunit A N-terminal signature|[Proteasome] Proteasome subunit"; CDD "proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02726"; similar_genes "PSA2_XENLA(e-value:6.0e-64;bit-score:241.0)"; Scaffold001 rebuild exon 2235043 2235163 . + . gene_id "RvY_00787"; transcript_id "RvY_00787.1"; Scaffold001 rebuild exon 2235236 2235368 . + . gene_id "RvY_00787"; transcript_id "RvY_00787.1"; Scaffold001 rebuild exon 2235429 2235551 . + . gene_id "RvY_00787"; transcript_id "RvY_00787.1"; Scaffold001 rebuild exon 2235625 2235780 . + . gene_id "RvY_00787"; transcript_id "RvY_00787.1"; Scaffold001 rebuild exon 2235982 2236159 . + . gene_id "RvY_00787"; transcript_id "RvY_00787.1"; Scaffold001 rebuild transcript 2237337 2239634 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; similar_genes "NHDC1_MOUSE(e-value:3.7e-19;bit-score:93.0)"; Scaffold001 rebuild exon 2237337 2237651 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild exon 2237821 2238256 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild exon 2238315 2238424 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild exon 2238501 2238665 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild exon 2238723 2238962 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild exon 2239023 2239106 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild exon 2239329 2239634 . + . gene_id "RvY_00788"; transcript_id "RvY_00788.1"; Scaffold001 rebuild transcript 2239960 2241450 . + . gene_id "RvY_00789"; transcript_id "RvY_00789.1"; gene_name "ATS1"; annotation "hypothetical protein."; Pfam "[RCC1_2] Regulator of chromosome condensation (RCC1) repeat|[RCC1] Regulator of chromosome condensation (RCC1) repeat"; CDD "Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]"; similar_genes "WBS16_HUMAN(e-value:5.1e-08;bit-score:56.0)"; Scaffold001 rebuild exon 2239960 2240521 . + . gene_id "RvY_00789"; transcript_id "RvY_00789.1"; Scaffold001 rebuild exon 2240666 2241450 . + . gene_id "RvY_00789"; transcript_id "RvY_00789.1"; Scaffold001 rebuild transcript 2241682 2243165 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; gene_name "AbgB"; annotation "hypothetical protein."; CDD "Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]"; similar_genes "P20D2_MOUSE(e-value:1.2e-07;bit-score:55.0)"; Scaffold001 rebuild exon 2241682 2241962 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; Scaffold001 rebuild exon 2242120 2242218 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; Scaffold001 rebuild exon 2242285 2242573 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; Scaffold001 rebuild exon 2242812 2242948 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; Scaffold001 rebuild exon 2243011 2243023 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; Scaffold001 rebuild exon 2243112 2243165 . - . gene_id "RvY_00790"; transcript_id "RvY_00790.1"; Scaffold001 rebuild transcript 2243419 2243718 . - . gene_id "RvY_00791"; transcript_id "RvY_00791.1"; gene_name "amidohydrolases"; annotation "hypothetical protein."; CDD "amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the Scaffold001 rebuild exon 2243419 2243718 . - . gene_id "RvY_00791"; transcript_id "RvY_00791.1"; Scaffold001 rebuild transcript 2244637 2245158 . - . gene_id "RvY_00792"; transcript_id "RvY_00792.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2244637 2244875 . - . gene_id "RvY_00792"; transcript_id "RvY_00792.1"; Scaffold001 rebuild exon 2244979 2245029 . - . gene_id "RvY_00792"; transcript_id "RvY_00792.1"; Scaffold001 rebuild exon 2245107 2245158 . - . gene_id "RvY_00792"; transcript_id "RvY_00792.1"; Scaffold001 rebuild transcript 2245332 2245721 . - . gene_id "RvY_00793"; transcript_id "RvY_00793.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2245332 2245721 . - . gene_id "RvY_00793"; transcript_id "RvY_00793.1"; Scaffold001 rebuild transcript 2245708 2245989 . - . gene_id "RvY_00793"; transcript_id "RvY_00793.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2245708 2245989 . - . gene_id "RvY_00793"; transcript_id "RvY_00793.2"; Scaffold001 rebuild transcript 2247801 2249874 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; gene_name "amidohydrolases"; annotation "hypothetical protein."; Pfam "[M20_dimer] Peptidase dimerisation domain"; CDD "amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the Scaffold001 rebuild exon 2247801 2248042 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2248132 2248176 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2248247 2248345 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2248472 2248706 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2248802 2248855 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2248941 2249077 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2249140 2249167 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2249248 2249351 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild exon 2249562 2249874 . - . gene_id "RvY_00794"; transcript_id "RvY_00794.1"; Scaffold001 rebuild transcript 2250996 2251448 . - . gene_id "RvY_00795"; transcript_id "RvY_00795.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2250996 2251448 . - . gene_id "RvY_00795"; transcript_id "RvY_00795.1"; Scaffold001 rebuild transcript 2251068 2251379 . + . gene_id "RvY_00796"; transcript_id "RvY_00796.1"; annotation "hypothetical protein."; Pfam "[PTH2] Peptidyl-tRNA hydrolase PTH2"; EC "EC3.1.1.29"; similar_genes "PTH_NANEQ(e-value:2.7e-13;bit-score:73.0)"; Scaffold001 rebuild exon 2251068 2251379 . + . gene_id "RvY_00796"; transcript_id "RvY_00796.1"; Scaffold001 rebuild transcript 2251499 2252410 . + . gene_id "RvY_00797"; transcript_id "RvY_00797.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2251499 2252410 . + . gene_id "RvY_00797"; transcript_id "RvY_00797.1"; Scaffold001 rebuild transcript 2252528 2253229 . - . gene_id "RvY_00798"; transcript_id "RvY_00798.1"; gene_name "SCP1"; annotation "hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; CDD "Calponin [Cytoskeleton]"; Scaffold001 rebuild exon 2252528 2252575 . - . gene_id "RvY_00798"; transcript_id "RvY_00798.1"; Scaffold001 rebuild exon 2252681 2252885 . - . gene_id "RvY_00798"; transcript_id "RvY_00798.1"; Scaffold001 rebuild exon 2252987 2253111 . - . gene_id "RvY_00798"; transcript_id "RvY_00798.1"; Scaffold001 rebuild exon 2253218 2253229 . - . gene_id "RvY_00798"; transcript_id "RvY_00798.1"; Scaffold001 rebuild transcript 2254181 2254901 . - . gene_id "RvY_00799"; transcript_id "RvY_00799.1"; gene_name "SCP1"; annotation "hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; CDD "Calponin [Cytoskeleton]"; Scaffold001 rebuild exon 2254181 2254288 . - . gene_id "RvY_00799"; transcript_id "RvY_00799.1"; Scaffold001 rebuild exon 2254364 2254568 . - . gene_id "RvY_00799"; transcript_id "RvY_00799.1"; Scaffold001 rebuild exon 2254669 2254793 . - . gene_id "RvY_00799"; transcript_id "RvY_00799.1"; Scaffold001 rebuild exon 2254890 2254901 . - . gene_id "RvY_00799"; transcript_id "RvY_00799.1"; Scaffold001 rebuild transcript 2255478 2257382 . - . gene_id "RvY_00800"; transcript_id "RvY_00800.1"; gene_name "DnaJ"; annotation "hypothetical protein."; Pfam "[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 2255478 2256113 . - . gene_id "RvY_00800"; transcript_id "RvY_00800.1"; Scaffold001 rebuild exon 2256341 2256706 . - . gene_id "RvY_00800"; transcript_id "RvY_00800.1"; Scaffold001 rebuild exon 2256778 2256911 . - . gene_id "RvY_00800"; transcript_id "RvY_00800.1"; Scaffold001 rebuild exon 2257019 2257382 . - . gene_id "RvY_00800"; transcript_id "RvY_00800.1"; Scaffold001 rebuild transcript 2258328 2259034 . + . gene_id "RvY_00801"; transcript_id "RvY_00801.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2258328 2258814 . + . gene_id "RvY_00801"; transcript_id "RvY_00801.1"; Scaffold001 rebuild exon 2258997 2259034 . + . gene_id "RvY_00801"; transcript_id "RvY_00801.1"; Scaffold001 rebuild transcript 2258636 2259297 . + . gene_id "RvY_00801"; transcript_id "RvY_00801.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2258636 2258814 . + . gene_id "RvY_00801"; transcript_id "RvY_00801.2"; Scaffold001 rebuild exon 2258997 2259297 . + . gene_id "RvY_00801"; transcript_id "RvY_00801.2"; Scaffold001 rebuild transcript 2262659 2264090 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; annotation "Ras-related GTP-binding protein A"; Pfam "[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; similar_genes "RRAGA_BOVIN(e-value:7.8e-149;bit-score:523.0)"; Scaffold001 rebuild exon 2262659 2262670 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; Scaffold001 rebuild exon 2262732 2262764 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; Scaffold001 rebuild exon 2262823 2262889 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; Scaffold001 rebuild exon 2262969 2263258 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; Scaffold001 rebuild exon 2263458 2263884 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; Scaffold001 rebuild exon 2263984 2264090 . + . gene_id "RvY_00802"; transcript_id "RvY_00802.1"; Scaffold001 rebuild transcript 2264503 2267958 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; annotation "hypothetical protein."; Pfam "[eIF2A] Eukaryotic translation initiation factor eIF2A"; KO "K15026"; Scaffold001 rebuild exon 2264503 2264649 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2264713 2265168 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2265489 2265866 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2265932 2266224 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2266518 2266883 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2266967 2267049 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2267120 2267323 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2267423 2267494 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2267556 2267625 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild exon 2267892 2267958 . - . gene_id "RvY_00803"; transcript_id "RvY_00803.1"; Scaffold001 rebuild transcript 2268593 2271656 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; gene_name "PARN"; annotation "poly(A)-specific ribonuclease [EC:3.1.13.4]"; Pfam "[CAF1] CAF1 family ribonuclease"; EC "EC3.1.13.4"; KO "K01148"; Scaffold001 rebuild exon 2268593 2268671 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2268744 2268872 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2268955 2269042 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2269106 2269241 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2269314 2269411 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2269478 2269584 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2269647 2269723 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2269798 2269865 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2269953 2270013 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2270100 2270261 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2270323 2270393 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2270456 2270517 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2270599 2270652 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2270748 2270980 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2271040 2271132 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2271209 2271297 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2271375 2271509 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild exon 2271599 2271656 . + . gene_id "RvY_00804"; transcript_id "RvY_00804.1"; Scaffold001 rebuild transcript 2272787 2275887 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2272787 2273085 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild exon 2273274 2273692 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild exon 2274020 2274502 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild exon 2274722 2274986 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild exon 2275118 2275267 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild exon 2275332 2275708 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild exon 2275778 2275887 . - . gene_id "RvY_00805"; transcript_id "RvY_00805.1"; Scaffold001 rebuild transcript 2276337 2276974 . + . gene_id "RvY_00806"; transcript_id "RvY_00806.1"; gene_name "NDUFS6"; annotation "NADH dehydrogenase (ubiquinone) Fe-S protein 6 [EC:1.6.5.3 1.6.99.3]"; Pfam "[zf-CHCC] Zinc-finger domain"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03939"; similar_genes "LBSA_EMENI(e-value:2.0e-07;bit-score:54.0)"; Scaffold001 rebuild exon 2276337 2276567 . + . gene_id "RvY_00806"; transcript_id "RvY_00806.1"; Scaffold001 rebuild exon 2276642 2276818 . + . gene_id "RvY_00806"; transcript_id "RvY_00806.1"; Scaffold001 rebuild exon 2276888 2276974 . + . gene_id "RvY_00806"; transcript_id "RvY_00806.1"; Scaffold001 rebuild transcript 2277404 2280190 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; gene_name "PRPF4B"; annotation "Serine/threonine-protein kinase PRP4 homolog"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08827"; similar_genes "PRP4B_BOVIN(e-value:1.6e-121;bit-score:433.0)"; Scaffold001 rebuild exon 2277404 2277613 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2277679 2277917 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2277982 2278250 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2278338 2278475 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2278553 2278709 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2278773 2278863 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2278923 2279427 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2279617 2280051 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild exon 2280135 2280190 . - . gene_id "RvY_00807"; transcript_id "RvY_00807.1"; Scaffold001 rebuild transcript 2281457 2282684 . + . gene_id "RvY_00808"; transcript_id "RvY_00808.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2281457 2282026 . + . gene_id "RvY_00808"; transcript_id "RvY_00808.1"; Scaffold001 rebuild exon 2282169 2282684 . + . gene_id "RvY_00808"; transcript_id "RvY_00808.1"; Scaffold001 rebuild transcript 2283300 2285787 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; annotation "hypothetical protein."; Pfam "[Mitofilin] Mitochondrial inner membrane protein"; similar_genes "IMMT_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold001 rebuild exon 2283300 2283335 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2283398 2283513 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2283579 2283970 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2284126 2284394 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2284467 2284625 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2284728 2284956 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2285021 2285214 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild exon 2285341 2285787 . + . gene_id "RvY_00809"; transcript_id "RvY_00809.1"; Scaffold001 rebuild transcript 2286031 2287011 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; gene_name "POMP"; annotation "proteasome maturation protein"; Pfam "[UMP1] Proteasome maturation factor UMP1"; CDD "Proteasome maturation factor UMP1. UMP1 is a short-lived chaperone present in the precursor form of the 20S proteasome and absent in the mature complex. UMP1 is required for the correct assembly and enzymatic activation of the proteasome. UMP1 seems to be degraded by the proteasome upon its formation"; KO "K11599"; Scaffold001 rebuild exon 2286031 2286101 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; Scaffold001 rebuild exon 2286191 2286284 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; Scaffold001 rebuild exon 2286353 2286454 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; Scaffold001 rebuild exon 2286574 2286634 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; Scaffold001 rebuild exon 2286797 2286912 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; Scaffold001 rebuild exon 2287009 2287011 . - . gene_id "RvY_00810"; transcript_id "RvY_00810.1"; Scaffold001 rebuild transcript 2289981 2290744 . + . gene_id "RvY_00811"; transcript_id "RvY_00811.1"; annotation "hypothetical protein."; Pfam "[DUF2315] Uncharacterised conserved protein (DUF2315)"; Scaffold001 rebuild exon 2289981 2290469 . + . gene_id "RvY_00811"; transcript_id "RvY_00811.1"; Scaffold001 rebuild exon 2290541 2290744 . + . gene_id "RvY_00811"; transcript_id "RvY_00811.1"; Scaffold001 rebuild transcript 2289981 2290478 . + . gene_id "RvY_00811"; transcript_id "RvY_00811.2"; annotation "hypothetical protein."; Pfam "[DUF2315] Uncharacterised conserved protein (DUF2315)"; Scaffold001 rebuild exon 2289981 2290478 . + . gene_id "RvY_00811"; transcript_id "RvY_00811.2"; Scaffold001 rebuild transcript 2291016 2292481 . + . gene_id "RvY_00812"; transcript_id "RvY_00812.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2291016 2291795 . + . gene_id "RvY_00812"; transcript_id "RvY_00812.1"; Scaffold001 rebuild exon 2291861 2292481 . + . gene_id "RvY_00812"; transcript_id "RvY_00812.1"; Scaffold001 rebuild transcript 2292848 2293100 . - . gene_id "RvY_00813"; transcript_id "RvY_00813.1"; annotation "hypothetical protein."; Pfam "[Tom7] TOM7 family"; Scaffold001 rebuild exon 2292848 2292912 . - . gene_id "RvY_00813"; transcript_id "RvY_00813.1"; Scaffold001 rebuild exon 2292974 2293100 . - . gene_id "RvY_00813"; transcript_id "RvY_00813.1"; Scaffold001 rebuild transcript 2293459 2293943 . - . gene_id "RvY_00814"; transcript_id "RvY_00814.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2293459 2293557 . - . gene_id "RvY_00814"; transcript_id "RvY_00814.1"; Scaffold001 rebuild exon 2293794 2293943 . - . gene_id "RvY_00814"; transcript_id "RvY_00814.1"; Scaffold001 rebuild transcript 2294571 2294879 . - . gene_id "RvY_00815"; transcript_id "RvY_00815.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2294571 2294879 . - . gene_id "RvY_00815"; transcript_id "RvY_00815.1"; Scaffold001 rebuild transcript 2295434 2299493 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; gene_name "NOX_Duox_like_FAD_NADP"; annotation "hypothetical protein."; Pfam "[Ferric_reduct] Ferric reductase like transmembrane component|[efhand] EF hand|(1)[NAD_binding_6] Ferric reductase NAD binding domain|[EF_hand_3] EF hand|[FAD_binding_8] FAD-binding domain|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; CDD "NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation."; EC "EC1.6.3.-"; similar_genes "(1)NOX5_HUMAN(e-value:1.1e-18;bit-score:91.0)(2)NOX5_HUMAN(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 2295434 2295565 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2295641 2295907 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2296249 2296676 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2296779 2296911 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2297024 2297215 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2297290 2297471 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2297541 2297783 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2297977 2298179 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2298270 2298480 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2298738 2298888 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2298961 2299072 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2299202 2299394 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild exon 2299457 2299493 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.1"; Scaffold001 rebuild transcript 2296723 2299493 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; gene_name "NOX_Duox_like_FAD_NADP"; annotation "hypothetical protein."; Pfam "[Ferric_reduct] Ferric reductase like transmembrane component|[efhand] EF hand|(1)[NAD_binding_6] Ferric reductase NAD binding domain|[EF_hand_3] EF hand|[FAD_binding_8] FAD-binding domain|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; CDD "NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation."; EC "EC1.6.3.-"; similar_genes "(1)NOX5_HUMAN(e-value:1.1e-18;bit-score:91.0)(2)NOX5_HUMAN(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 2296723 2296911 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2297024 2297215 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2297290 2297471 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2297541 2297783 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2297977 2298179 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2298270 2298480 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2298738 2298888 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2298961 2299072 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2299202 2299394 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild exon 2299457 2299493 . - . gene_id "RvY_00816"; transcript_id "RvY_00816.2"; Scaffold001 rebuild transcript 2300767 2302295 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; gene_name "(1)AQP3(2)MIP"; annotation "(1)aquaporin-3(2)hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms."; KO "(1)K09876"; similar_genes "(1)AQP9_MOUSE(e-value:2.0e-11;bit-score:67.0)(2)AQP10_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold001 rebuild exon 2300767 2301062 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; Scaffold001 rebuild exon 2301130 2301177 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; Scaffold001 rebuild exon 2301268 2301406 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; Scaffold001 rebuild exon 2301504 2301766 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; Scaffold001 rebuild exon 2301901 2302027 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; Scaffold001 rebuild exon 2302179 2302295 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.1"; Scaffold001 rebuild transcript 2301414 2302295 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.2"; gene_name "(1)AQP3(2)MIP"; annotation "(1)aquaporin-3(2)hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms."; KO "(1)K09876"; similar_genes "(1)AQP9_MOUSE(e-value:2.0e-11;bit-score:67.0)(2)AQP10_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold001 rebuild exon 2301414 2301766 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.2"; Scaffold001 rebuild exon 2301901 2302027 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.2"; Scaffold001 rebuild exon 2302179 2302295 . - . gene_id "RvY_00817"; transcript_id "RvY_00817.2"; Scaffold001 rebuild transcript 2303641 2305437 . - . gene_id "RvY_00818"; transcript_id "RvY_00818.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2303641 2303910 . - . gene_id "RvY_00818"; transcript_id "RvY_00818.1"; Scaffold001 rebuild exon 2304211 2304452 . - . gene_id "RvY_00818"; transcript_id "RvY_00818.1"; Scaffold001 rebuild exon 2304578 2304652 . - . gene_id "RvY_00818"; transcript_id "RvY_00818.1"; Scaffold001 rebuild exon 2305179 2305437 . - . gene_id "RvY_00818"; transcript_id "RvY_00818.1"; Scaffold001 rebuild transcript 2306640 2306990 . + . gene_id "RvY_00819"; transcript_id "RvY_00819.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2306640 2306990 . + . gene_id "RvY_00819"; transcript_id "RvY_00819.1"; Scaffold001 rebuild transcript 2308577 2308957 . - . gene_id "RvY_00820"; transcript_id "RvY_00820.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2308577 2308732 . - . gene_id "RvY_00820"; transcript_id "RvY_00820.1"; Scaffold001 rebuild exon 2308805 2308957 . - . gene_id "RvY_00820"; transcript_id "RvY_00820.1"; Scaffold001 rebuild transcript 2309889 2311810 . + . gene_id "RvY_00821"; transcript_id "RvY_00821.1"; gene_name "gshB"; annotation "glutathione synthase [EC:6.3.2.3]"; Pfam "[GSH_synthase] Eukaryotic glutathione synthase|[GSH_synth_ATP] Eukaryotic glutathione synthase, ATP binding domain"; CDD "Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily."; EC "EC6.3.2.3"; KO "K01920"; similar_genes "GSHB_XENLA(e-value:9.4e-16;bit-score:81.0)"; Scaffold001 rebuild exon 2309889 2310050 . + . gene_id "RvY_00821"; transcript_id "RvY_00821.1"; Scaffold001 rebuild exon 2310305 2311019 . + . gene_id "RvY_00821"; transcript_id "RvY_00821.1"; Scaffold001 rebuild exon 2311093 2311231 . + . gene_id "RvY_00821"; transcript_id "RvY_00821.1"; Scaffold001 rebuild exon 2311345 2311810 . + . gene_id "RvY_00821"; transcript_id "RvY_00821.1"; Scaffold001 rebuild transcript 2311836 2312596 . - . gene_id "RvY_00822"; transcript_id "RvY_00822.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2311836 2311889 . - . gene_id "RvY_00822"; transcript_id "RvY_00822.1"; Scaffold001 rebuild exon 2311958 2312596 . - . gene_id "RvY_00822"; transcript_id "RvY_00822.1"; Scaffold001 rebuild transcript 2316653 2327012 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "SALL3_MOUSE(e-value:6.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 2316653 2316743 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2322983 2323533 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2323603 2324057 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2324356 2324735 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2324883 2325258 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2325616 2326063 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2326138 2326411 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild exon 2326612 2327012 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.1"; Scaffold001 rebuild transcript 2316653 2327012 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "SALL3_MOUSE(e-value:6.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 2316653 2316743 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2322983 2323533 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2323603 2324057 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2324356 2324735 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2324883 2325258 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2325628 2326063 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2326138 2326411 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild exon 2326612 2327012 . + . gene_id "RvY_00823"; transcript_id "RvY_00823.2"; Scaffold001 rebuild transcript 2331810 2335239 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; gene_name "RFXX"; annotation "regulatory factor X, other"; Pfam "[RFX_DNA_binding] RFX DNA-binding domain"; KO "K09175"; Scaffold001 rebuild exon 2331810 2332058 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2332171 2332333 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2332427 2332656 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2332723 2332872 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2332936 2333045 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2333136 2333391 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2333460 2333724 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2333810 2333968 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2334059 2334246 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2334345 2334500 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2334561 2334765 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2334945 2335125 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild exon 2335212 2335239 . - . gene_id "RvY_00824"; transcript_id "RvY_00824.1"; Scaffold001 rebuild transcript 2335963 2336277 . + . gene_id "RvY_00825"; transcript_id "RvY_00825.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2335963 2336011 . + . gene_id "RvY_00825"; transcript_id "RvY_00825.1"; Scaffold001 rebuild exon 2336099 2336277 . + . gene_id "RvY_00825"; transcript_id "RvY_00825.1"; Scaffold001 rebuild transcript 2336664 2337347 . - . gene_id "RvY_00826"; transcript_id "RvY_00826.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2336664 2336870 . - . gene_id "RvY_00826"; transcript_id "RvY_00826.1"; Scaffold001 rebuild exon 2336944 2337261 . - . gene_id "RvY_00826"; transcript_id "RvY_00826.1"; Scaffold001 rebuild exon 2337318 2337347 . - . gene_id "RvY_00826"; transcript_id "RvY_00826.1"; Scaffold001 rebuild transcript 2338087 2339458 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2338087 2338119 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.2"; Scaffold001 rebuild exon 2338238 2338671 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.2"; Scaffold001 rebuild exon 2339350 2339458 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.2"; Scaffold001 rebuild transcript 2338087 2338759 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2338087 2338119 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.3"; Scaffold001 rebuild exon 2338238 2338759 . + . gene_id "RvY_00827"; transcript_id "RvY_00827.3"; Scaffold001 rebuild transcript 2340494 2341374 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2340494 2340505 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.1"; Scaffold001 rebuild exon 2340566 2340731 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.1"; Scaffold001 rebuild exon 2340804 2341034 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.1"; Scaffold001 rebuild exon 2341106 2341374 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.1"; Scaffold001 rebuild transcript 2340572 2341156 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2340572 2340731 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.2"; Scaffold001 rebuild exon 2340804 2341156 . + . gene_id "RvY_00828"; transcript_id "RvY_00828.2"; Scaffold001 rebuild transcript 2341435 2342326 . + . gene_id "RvY_00829"; transcript_id "RvY_00829.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2341435 2341516 . + . gene_id "RvY_00829"; transcript_id "RvY_00829.1"; Scaffold001 rebuild exon 2341752 2342326 . + . gene_id "RvY_00829"; transcript_id "RvY_00829.1"; Scaffold001 rebuild transcript 2342774 2343408 . - . gene_id "RvY_00830"; transcript_id "RvY_00830.1"; annotation "hypothetical protein."; Pfam "[HMG_box] HMG (high mobility group) box"; Scaffold001 rebuild exon 2342774 2342899 . - . gene_id "RvY_00830"; transcript_id "RvY_00830.1"; Scaffold001 rebuild exon 2342958 2343092 . - . gene_id "RvY_00830"; transcript_id "RvY_00830.1"; Scaffold001 rebuild exon 2343166 2343408 . - . gene_id "RvY_00830"; transcript_id "RvY_00830.1"; Scaffold001 rebuild transcript 2344801 2345441 . - . gene_id "RvY_00831"; transcript_id "RvY_00831.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2344801 2345085 . - . gene_id "RvY_00831"; transcript_id "RvY_00831.1"; Scaffold001 rebuild exon 2345166 2345441 . - . gene_id "RvY_00831"; transcript_id "RvY_00831.1"; Scaffold001 rebuild transcript 2344493 2344804 . - . gene_id "RvY_00831"; transcript_id "RvY_00831.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2344493 2344804 . - . gene_id "RvY_00831"; transcript_id "RvY_00831.2"; Scaffold001 rebuild transcript 2348001 2348267 . + . gene_id "RvY_00832"; transcript_id "RvY_00832.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2348001 2348267 . + . gene_id "RvY_00832"; transcript_id "RvY_00832.1"; Scaffold001 rebuild transcript 2348679 2349704 . + . gene_id "RvY_00833"; transcript_id "RvY_00833.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2348679 2348706 . + . gene_id "RvY_00833"; transcript_id "RvY_00833.1"; Scaffold001 rebuild exon 2348955 2349371 . + . gene_id "RvY_00833"; transcript_id "RvY_00833.1"; Scaffold001 rebuild exon 2349565 2349704 . + . gene_id "RvY_00833"; transcript_id "RvY_00833.1"; Scaffold001 rebuild transcript 2350317 2355423 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2350317 2350366 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; Scaffold001 rebuild exon 2350448 2351233 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; Scaffold001 rebuild exon 2351476 2351857 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; Scaffold001 rebuild exon 2351930 2353301 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; Scaffold001 rebuild exon 2353508 2355141 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; Scaffold001 rebuild exon 2355205 2355423 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.1"; Scaffold001 rebuild transcript 2351218 2355423 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2351218 2351233 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.2"; Scaffold001 rebuild exon 2351481 2351857 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.2"; Scaffold001 rebuild exon 2351930 2353301 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.2"; Scaffold001 rebuild exon 2353508 2355141 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.2"; Scaffold001 rebuild exon 2355205 2355423 . + . gene_id "RvY_00834"; transcript_id "RvY_00834.2"; Scaffold001 rebuild transcript 2357115 2359435 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold001 rebuild exon 2357115 2357261 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; Scaffold001 rebuild exon 2357335 2357497 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; Scaffold001 rebuild exon 2357610 2357722 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; Scaffold001 rebuild exon 2357809 2357845 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; Scaffold001 rebuild exon 2357954 2358313 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; Scaffold001 rebuild exon 2358564 2359435 . + . gene_id "RvY_00835"; transcript_id "RvY_00835.1"; Scaffold001 rebuild transcript 2359621 2361036 . - . gene_id "RvY_00836"; transcript_id "RvY_00836.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2359621 2359753 . - . gene_id "RvY_00836"; transcript_id "RvY_00836.1"; Scaffold001 rebuild exon 2359826 2359992 . - . gene_id "RvY_00836"; transcript_id "RvY_00836.1"; Scaffold001 rebuild exon 2360059 2360191 . - . gene_id "RvY_00836"; transcript_id "RvY_00836.1"; Scaffold001 rebuild exon 2360648 2360883 . - . gene_id "RvY_00836"; transcript_id "RvY_00836.1"; Scaffold001 rebuild exon 2360992 2361036 . - . gene_id "RvY_00836"; transcript_id "RvY_00836.1"; Scaffold001 rebuild transcript 2360669 2361196 . + . gene_id "RvY_00837"; transcript_id "RvY_00837.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2360669 2360919 . + . gene_id "RvY_00837"; transcript_id "RvY_00837.1"; Scaffold001 rebuild exon 2360998 2361196 . + . gene_id "RvY_00837"; transcript_id "RvY_00837.1"; Scaffold001 rebuild transcript 2360669 2360923 . + . gene_id "RvY_00837"; transcript_id "RvY_00837.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2360669 2360923 . + . gene_id "RvY_00837"; transcript_id "RvY_00837.2"; Scaffold001 rebuild transcript 2362040 2362863 . + . gene_id "RvY_00838"; transcript_id "RvY_00838.1"; gene_name "COG5540"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-Apc11] Anaphase-promoting complex subunit 11 RING-H2 finger"; CDD "RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 2362040 2362209 . + . gene_id "RvY_00838"; transcript_id "RvY_00838.1"; Scaffold001 rebuild exon 2362380 2362863 . + . gene_id "RvY_00838"; transcript_id "RvY_00838.1"; Scaffold001 rebuild transcript 2363321 2364220 . - . gene_id "RvY_00839"; transcript_id "RvY_00839.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2363321 2364220 . - . gene_id "RvY_00839"; transcript_id "RvY_00839.1"; Scaffold001 rebuild transcript 2363321 2364103 . - . gene_id "RvY_00839"; transcript_id "RvY_00839.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2363321 2364103 . - . gene_id "RvY_00839"; transcript_id "RvY_00839.2"; Scaffold001 rebuild transcript 2366155 2366934 . + . gene_id "RvY_00840"; transcript_id "RvY_00840.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2366155 2366311 . + . gene_id "RvY_00840"; transcript_id "RvY_00840.1"; Scaffold001 rebuild exon 2366378 2366541 . + . gene_id "RvY_00840"; transcript_id "RvY_00840.1"; Scaffold001 rebuild exon 2366608 2366934 . + . gene_id "RvY_00840"; transcript_id "RvY_00840.1"; Scaffold001 rebuild transcript 2367125 2367834 . + . gene_id "RvY_00841"; transcript_id "RvY_00841.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2367125 2367362 . + . gene_id "RvY_00841"; transcript_id "RvY_00841.1"; Scaffold001 rebuild exon 2367427 2367611 . + . gene_id "RvY_00841"; transcript_id "RvY_00841.1"; Scaffold001 rebuild exon 2367676 2367834 . + . gene_id "RvY_00841"; transcript_id "RvY_00841.1"; Scaffold001 rebuild transcript 2368194 2368890 . - . gene_id "RvY_00842"; transcript_id "RvY_00842.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2368194 2368357 . - . gene_id "RvY_00842"; transcript_id "RvY_00842.1"; Scaffold001 rebuild exon 2368551 2368890 . - . gene_id "RvY_00842"; transcript_id "RvY_00842.1"; Scaffold001 rebuild transcript 2368911 2370117 . - . gene_id "RvY_00843"; transcript_id "RvY_00843.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2368911 2368934 . - . gene_id "RvY_00843"; transcript_id "RvY_00843.1"; Scaffold001 rebuild exon 2369160 2369362 . - . gene_id "RvY_00843"; transcript_id "RvY_00843.1"; Scaffold001 rebuild exon 2369495 2369632 . - . gene_id "RvY_00843"; transcript_id "RvY_00843.1"; Scaffold001 rebuild exon 2369735 2369899 . - . gene_id "RvY_00843"; transcript_id "RvY_00843.1"; Scaffold001 rebuild exon 2370087 2370117 . - . gene_id "RvY_00843"; transcript_id "RvY_00843.1"; Scaffold001 rebuild transcript 2370122 2370838 . - . gene_id "RvY_00844"; transcript_id "RvY_00844.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2370122 2370456 . - . gene_id "RvY_00844"; transcript_id "RvY_00844.1"; Scaffold001 rebuild exon 2370661 2370838 . - . gene_id "RvY_00844"; transcript_id "RvY_00844.1"; Scaffold001 rebuild transcript 2371537 2372462 . - . gene_id "RvY_00845"; transcript_id "RvY_00845.1"; gene_name "PB1_p62"; annotation "hypothetical protein."; CDD "The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants."; Scaffold001 rebuild exon 2371537 2371543 . - . gene_id "RvY_00845"; transcript_id "RvY_00845.1"; Scaffold001 rebuild exon 2371645 2371694 . - . gene_id "RvY_00845"; transcript_id "RvY_00845.1"; Scaffold001 rebuild exon 2371760 2371902 . - . gene_id "RvY_00845"; transcript_id "RvY_00845.1"; Scaffold001 rebuild exon 2371988 2372462 . - . gene_id "RvY_00845"; transcript_id "RvY_00845.1"; Scaffold001 rebuild transcript 2373357 2374571 . - . gene_id "RvY_00846"; transcript_id "RvY_00846.1"; gene_name "COG4221"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]|[NAD_binding_10] NADH(P)-binding"; CDD "Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]"; EC "EC1.-.-.-"; similar_genes "DHR11_HUMAN(e-value:3.9e-25;bit-score:113.0)"; Scaffold001 rebuild exon 2373357 2373587 . - . gene_id "RvY_00846"; transcript_id "RvY_00846.1"; Scaffold001 rebuild exon 2373686 2373815 . - . gene_id "RvY_00846"; transcript_id "RvY_00846.1"; Scaffold001 rebuild exon 2373900 2373994 . - . gene_id "RvY_00846"; transcript_id "RvY_00846.1"; Scaffold001 rebuild exon 2374142 2374216 . - . gene_id "RvY_00846"; transcript_id "RvY_00846.1"; Scaffold001 rebuild exon 2374305 2374571 . - . gene_id "RvY_00846"; transcript_id "RvY_00846.1"; Scaffold001 rebuild transcript 2374622 2375335 . + . gene_id "RvY_00847"; transcript_id "RvY_00847.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2374622 2374705 . + . gene_id "RvY_00847"; transcript_id "RvY_00847.1"; Scaffold001 rebuild exon 2375306 2375335 . + . gene_id "RvY_00847"; transcript_id "RvY_00847.1"; Scaffold001 rebuild transcript 2375669 2378943 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold001 rebuild exon 2375669 2375770 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; Scaffold001 rebuild exon 2376095 2376284 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; Scaffold001 rebuild exon 2377230 2377421 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; Scaffold001 rebuild exon 2377615 2377838 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; Scaffold001 rebuild exon 2378014 2378314 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; Scaffold001 rebuild exon 2378567 2378943 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.1"; Scaffold001 rebuild transcript 2376992 2378943 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.2"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold001 rebuild exon 2376992 2377010 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.2"; Scaffold001 rebuild exon 2377230 2377421 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.2"; Scaffold001 rebuild exon 2377615 2377838 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.2"; Scaffold001 rebuild exon 2378014 2378314 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.2"; Scaffold001 rebuild exon 2378567 2378943 . + . gene_id "RvY_00848"; transcript_id "RvY_00848.2"; Scaffold001 rebuild transcript 2380292 2381201 . + . gene_id "RvY_00849"; transcript_id "RvY_00849.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2380292 2380615 . + . gene_id "RvY_00849"; transcript_id "RvY_00849.1"; Scaffold001 rebuild exon 2381025 2381201 . + . gene_id "RvY_00849"; transcript_id "RvY_00849.1"; Scaffold001 rebuild transcript 2383120 2387820 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; gene_name "(1)ACE(2,3)M2_ACE"; annotation "(1,3)putative Angiotensin-converting enzyme(2)Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold001 rebuild exon 2383120 2383141 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2383260 2383336 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2383431 2383574 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2383655 2384090 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2384176 2384401 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2384494 2384760 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2384836 2384886 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2384958 2384988 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2385055 2385112 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2385195 2385284 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2385388 2385532 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2385610 2385708 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2385774 2385914 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2385989 2386161 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2386289 2386425 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2386515 2386947 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2387155 2387370 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2387435 2387702 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild exon 2387766 2387820 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.1"; Scaffold001 rebuild transcript 2383120 2389210 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; gene_name "(1)ACE(2,3)M2_ACE"; annotation "(1,3)putative Angiotensin-converting enzyme(2)Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold001 rebuild exon 2383120 2383141 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2383260 2383336 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2383431 2383574 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2383655 2384090 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2384176 2384401 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2384494 2384760 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2384836 2384886 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2384958 2384975 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2387973 2388130 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2388191 2388335 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2388431 2388529 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2388608 2388730 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2388829 2388995 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild exon 2389131 2389210 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.2"; Scaffold001 rebuild transcript 2384861 2387907 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; gene_name "(1)ACE(2,3)M2_ACE"; annotation "(1,3)putative Angiotensin-converting enzyme(2)Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold001 rebuild exon 2384861 2384886 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2384958 2384988 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2385055 2385112 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2385195 2385284 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2385388 2385532 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2385610 2385708 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2385774 2385914 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2385989 2386161 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2386289 2386425 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2386515 2386947 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2387155 2387370 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2387435 2387702 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2387766 2387816 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild exon 2387886 2387907 . + . gene_id "RvY_00850"; transcript_id "RvY_00850.3"; Scaffold001 rebuild transcript 2390060 2390464 . + . gene_id "RvY_00851"; transcript_id "RvY_00851.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2390060 2390157 . + . gene_id "RvY_00851"; transcript_id "RvY_00851.1"; Scaffold001 rebuild exon 2390251 2390464 . + . gene_id "RvY_00851"; transcript_id "RvY_00851.1"; Scaffold001 rebuild transcript 2390986 2392425 . - . gene_id "RvY_00852"; transcript_id "RvY_00852.1"; gene_name "RING"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[DUF1232]|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)"; KO "K15707"; Scaffold001 rebuild exon 2390986 2391575 . - . gene_id "RvY_00852"; transcript_id "RvY_00852.1"; Scaffold001 rebuild exon 2391929 2392143 . - . gene_id "RvY_00852"; transcript_id "RvY_00852.1"; Scaffold001 rebuild exon 2392211 2392425 . - . gene_id "RvY_00852"; transcript_id "RvY_00852.1"; Scaffold001 rebuild transcript 2392744 2393506 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2392744 2393076 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.1"; Scaffold001 rebuild exon 2393192 2393337 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.1"; Scaffold001 rebuild exon 2393431 2393506 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.1"; Scaffold001 rebuild transcript 2392744 2393097 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2392744 2393097 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.2"; Scaffold001 rebuild transcript 2393304 2393735 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2393304 2393337 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.3"; Scaffold001 rebuild exon 2393431 2393735 . + . gene_id "RvY_00853"; transcript_id "RvY_00853.3"; Scaffold001 rebuild transcript 2395109 2396986 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; gene_name "galK"; annotation "galactokinase [EC:2.7.1.6]"; Pfam "[GHMP_kinases_C] GHMP kinases C terminal|[GHMP_kinases_N] GHMP kinases N terminal domain|[GalKase_gal_bdg] Galactokinase galactose-binding signature"; CDD "Galactokinase [Carbohydrate transport and metabolism]"; EC "EC2.7.1.157|EC2.7.1.6"; KO "K00849"; similar_genes "GALK2_MOUSE(e-value:1.5e-24;bit-score:111.0)"; Scaffold001 rebuild exon 2395109 2395238 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; Scaffold001 rebuild exon 2395349 2395695 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; Scaffold001 rebuild exon 2395793 2395851 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; Scaffold001 rebuild exon 2395917 2396133 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; Scaffold001 rebuild exon 2396197 2396247 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; Scaffold001 rebuild exon 2396369 2396986 . + . gene_id "RvY_00854"; transcript_id "RvY_00854.1"; Scaffold001 rebuild transcript 2398307 2399199 . + . gene_id "RvY_00855"; transcript_id "RvY_00855.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2398307 2398463 . + . gene_id "RvY_00855"; transcript_id "RvY_00855.1"; Scaffold001 rebuild exon 2398548 2398720 . + . gene_id "RvY_00855"; transcript_id "RvY_00855.1"; Scaffold001 rebuild exon 2398811 2398906 . + . gene_id "RvY_00855"; transcript_id "RvY_00855.1"; Scaffold001 rebuild exon 2398996 2399199 . + . gene_id "RvY_00855"; transcript_id "RvY_00855.1"; Scaffold001 rebuild transcript 2399428 2401259 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2399428 2399505 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; Scaffold001 rebuild exon 2399592 2399742 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; Scaffold001 rebuild exon 2399809 2400452 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; Scaffold001 rebuild exon 2400514 2400622 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; Scaffold001 rebuild exon 2400695 2400910 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; Scaffold001 rebuild exon 2400970 2401259 . - . gene_id "RvY_00856"; transcript_id "RvY_00856.1"; Scaffold001 rebuild transcript 2402644 2404404 . + . gene_id "RvY_00857"; transcript_id "RvY_00857.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2402644 2402900 . + . gene_id "RvY_00857"; transcript_id "RvY_00857.1"; Scaffold001 rebuild exon 2403179 2403800 . + . gene_id "RvY_00857"; transcript_id "RvY_00857.1"; Scaffold001 rebuild exon 2403864 2403926 . + . gene_id "RvY_00857"; transcript_id "RvY_00857.1"; Scaffold001 rebuild exon 2404015 2404404 . + . gene_id "RvY_00857"; transcript_id "RvY_00857.1"; Scaffold001 rebuild transcript 2404523 2404987 . - . gene_id "RvY_00858"; transcript_id "RvY_00858.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2404523 2404849 . - . gene_id "RvY_00858"; transcript_id "RvY_00858.1"; Scaffold001 rebuild exon 2404952 2404987 . - . gene_id "RvY_00858"; transcript_id "RvY_00858.1"; Scaffold001 rebuild transcript 2405600 2406028 . + . gene_id "RvY_00859"; transcript_id "RvY_00859.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2405600 2406028 . + . gene_id "RvY_00859"; transcript_id "RvY_00859.1"; Scaffold001 rebuild transcript 2405870 2406490 . - . gene_id "RvY_00860"; transcript_id "RvY_00860.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2405870 2406024 . - . gene_id "RvY_00860"; transcript_id "RvY_00860.1"; Scaffold001 rebuild exon 2406463 2406490 . - . gene_id "RvY_00860"; transcript_id "RvY_00860.1"; Scaffold001 rebuild transcript 2406533 2407937 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; gene_name "K00084"; annotation "15-hydroxyprostaglandin dehydrogenase (NADP) [EC:1.1.1.197]"; Pfam "[adh_short] short chain dehydrogenase|[KR]"; CDD "Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.184|EC1.1.1.197"; KO "K00084"; similar_genes "CBR1_MOUSE(e-value:2.0e-09;bit-score:60.0)"; Scaffold001 rebuild exon 2406533 2406553 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild exon 2406632 2406713 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild exon 2406836 2407014 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild exon 2407122 2407234 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild exon 2407295 2407420 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild exon 2407504 2407663 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild exon 2407752 2407937 . + . gene_id "RvY_00861"; transcript_id "RvY_00861.1"; Scaffold001 rebuild transcript 2408119 2408418 . + . gene_id "RvY_00862"; transcript_id "RvY_00862.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2408119 2408418 . + . gene_id "RvY_00862"; transcript_id "RvY_00862.1"; Scaffold001 rebuild transcript 2408760 2410209 . + . gene_id "RvY_00863"; transcript_id "RvY_00863.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2408760 2408796 . + . gene_id "RvY_00863"; transcript_id "RvY_00863.2"; Scaffold001 rebuild exon 2408969 2409502 . + . gene_id "RvY_00863"; transcript_id "RvY_00863.2"; Scaffold001 rebuild exon 2409575 2410209 . + . gene_id "RvY_00863"; transcript_id "RvY_00863.2"; Scaffold001 rebuild transcript 2411043 2417734 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; gene_name "YCS4"; annotation "condensin complex subunit 1"; Pfam "[Cnd1] non-SMC mitotic condensation complex subunit 1|[HEAT] HEAT repeat"; CDD "Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]"; KO "K06677"; Scaffold001 rebuild exon 2411043 2411399 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2411472 2411661 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2411775 2411947 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2412008 2412185 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2412261 2412416 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2412486 2412612 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2412692 2412900 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2412977 2413265 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2413336 2413429 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2413488 2413617 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2413727 2413848 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2413919 2414003 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2414109 2414356 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2414440 2414623 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2414716 2414850 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2414913 2415054 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2415169 2415250 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2415323 2415541 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2415605 2415730 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2415931 2416075 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2416276 2416399 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2416494 2416621 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2416691 2416836 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2416894 2417048 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2417133 2417191 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2417270 2417348 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2417446 2417589 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild exon 2417695 2417734 . - . gene_id "RvY_00864"; transcript_id "RvY_00864.1"; Scaffold001 rebuild transcript 2417801 2418313 . - . gene_id "RvY_00865"; transcript_id "RvY_00865.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2417801 2417984 . - . gene_id "RvY_00865"; transcript_id "RvY_00865.1"; Scaffold001 rebuild exon 2418159 2418313 . - . gene_id "RvY_00865"; transcript_id "RvY_00865.1"; Scaffold001 rebuild transcript 2418699 2419466 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.1"; annotation "hypothetical protein."; Pfam "[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; Scaffold001 rebuild exon 2418699 2418786 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.1"; Scaffold001 rebuild exon 2418860 2419035 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.1"; Scaffold001 rebuild exon 2419130 2419244 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.1"; Scaffold001 rebuild exon 2419339 2419466 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.1"; Scaffold001 rebuild transcript 2418699 2419395 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.2"; annotation "hypothetical protein."; Pfam "[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; Scaffold001 rebuild exon 2418699 2418786 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.2"; Scaffold001 rebuild exon 2418860 2419035 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.2"; Scaffold001 rebuild exon 2419130 2419234 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.2"; Scaffold001 rebuild exon 2419339 2419395 . + . gene_id "RvY_00866"; transcript_id "RvY_00866.2"; Scaffold001 rebuild transcript 2419777 2422803 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; annotation "Cleft lip and palate transmembrane protein 1"; Pfam "[CLPTM1] Cleft lip and palate transmembrane protein 1 (CLPTM1)"; similar_genes "CLPT1_HUMAN(e-value:1.7e-95;bit-score:346.0)"; Scaffold001 rebuild exon 2419777 2420096 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2420167 2420237 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2420314 2420410 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2420499 2420730 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2420793 2421080 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2421170 2421335 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2421410 2421509 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2421595 2421934 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2422095 2422250 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild exon 2422486 2422803 . - . gene_id "RvY_00867"; transcript_id "RvY_00867.1"; Scaffold001 rebuild transcript 2423808 2424827 . - . gene_id "RvY_00868"; transcript_id "RvY_00868.1"; product "CAHS4"; annotation "CAHS4 | hypothetical protein."; Scaffold001 rebuild exon 2423808 2423887 . - . gene_id "RvY_00868"; transcript_id "RvY_00868.1"; Scaffold001 rebuild exon 2423975 2424123 . - . gene_id "RvY_00868"; transcript_id "RvY_00868.1"; Scaffold001 rebuild exon 2424241 2424305 . - . gene_id "RvY_00868"; transcript_id "RvY_00868.1"; Scaffold001 rebuild exon 2424372 2424553 . - . gene_id "RvY_00868"; transcript_id "RvY_00868.1"; Scaffold001 rebuild exon 2424629 2424827 . - . gene_id "RvY_00868"; transcript_id "RvY_00868.1"; Scaffold001 rebuild transcript 2428199 2429828 . + . gene_id "RvY_00869"; transcript_id "RvY_00869.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2428199 2429252 . + . gene_id "RvY_00869"; transcript_id "RvY_00869.1"; Scaffold001 rebuild exon 2429314 2429828 . + . gene_id "RvY_00869"; transcript_id "RvY_00869.1"; Scaffold001 rebuild transcript 2430157 2430618 . - . gene_id "RvY_00870"; transcript_id "RvY_00870.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold001 rebuild exon 2430157 2430618 . - . gene_id "RvY_00870"; transcript_id "RvY_00870.1"; Scaffold001 rebuild transcript 2431472 2434151 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; gene_name "API5"; annotation "hypothetical protein."; Pfam "[API5] Apoptosis inhibitory protein 5 (API5)"; CDD "Apoptosis inhibitory protein 5 (API5). This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors."; Scaffold001 rebuild exon 2431472 2431572 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2431853 2432025 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2432134 2432204 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2432261 2432374 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2432461 2432533 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2432615 2432784 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2432847 2433026 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2433081 2433287 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2433348 2433499 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2433562 2433727 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2433816 2433983 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild exon 2434071 2434151 . - . gene_id "RvY_00871"; transcript_id "RvY_00871.1"; Scaffold001 rebuild transcript 2434713 2435801 . + . gene_id "RvY_00872"; transcript_id "RvY_00872.1"; annotation "hypothetical protein."; Pfam "[Med4] Vitamin-D-receptor interacting Mediator subunit 4"; KO "K15146"; similar_genes "MED4_DANRE(e-value:6.9e-12;bit-score:69.0)"; Scaffold001 rebuild exon 2434713 2435142 . + . gene_id "RvY_00872"; transcript_id "RvY_00872.1"; Scaffold001 rebuild exon 2435209 2435801 . + . gene_id "RvY_00872"; transcript_id "RvY_00872.1"; Scaffold001 rebuild transcript 2436169 2437947 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; annotation "hypothetical protein."; Pfam "[Snf7]"; KO "K15053"; Scaffold001 rebuild exon 2436169 2436278 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; Scaffold001 rebuild exon 2436362 2436623 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; Scaffold001 rebuild exon 2436694 2437074 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; Scaffold001 rebuild exon 2437189 2437480 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; Scaffold001 rebuild exon 2437551 2437856 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; Scaffold001 rebuild exon 2437925 2437947 . - . gene_id "RvY_00873"; transcript_id "RvY_00873.1"; Scaffold001 rebuild transcript 2438421 2439647 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 2438421 2438566 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.1"; Scaffold001 rebuild exon 2438641 2438716 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.1"; Scaffold001 rebuild exon 2438952 2439294 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.1"; Scaffold001 rebuild exon 2439370 2439647 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.1"; Scaffold001 rebuild transcript 2438421 2439647 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.2"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 2438421 2438566 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.2"; Scaffold001 rebuild exon 2438641 2438716 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.2"; Scaffold001 rebuild exon 2438952 2439144 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.2"; Scaffold001 rebuild exon 2439232 2439294 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.2"; Scaffold001 rebuild exon 2439370 2439647 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.2"; Scaffold001 rebuild transcript 2438421 2438965 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.3"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 2438421 2438566 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.3"; Scaffold001 rebuild exon 2438641 2438965 . + . gene_id "RvY_00874"; transcript_id "RvY_00874.3"; Scaffold001 rebuild transcript 2440049 2442072 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; similar_genes "NHDC2_XENTR(e-value:1.1e-20;bit-score:98.0)"; Scaffold001 rebuild exon 2440049 2440270 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; Scaffold001 rebuild exon 2440326 2440649 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; Scaffold001 rebuild exon 2440708 2440872 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; Scaffold001 rebuild exon 2440961 2441070 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; Scaffold001 rebuild exon 2441155 2441345 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; Scaffold001 rebuild exon 2441525 2442072 . - . gene_id "RvY_00875"; transcript_id "RvY_00875.1"; Scaffold001 rebuild transcript 2443114 2443449 . - . gene_id "RvY_00876"; transcript_id "RvY_00876.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2443114 2443292 . - . gene_id "RvY_00876"; transcript_id "RvY_00876.1"; Scaffold001 rebuild exon 2443404 2443449 . - . gene_id "RvY_00876"; transcript_id "RvY_00876.1"; Scaffold001 rebuild transcript 2443620 2445154 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2443620 2443687 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; Scaffold001 rebuild exon 2443768 2443867 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; Scaffold001 rebuild exon 2443939 2443970 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; Scaffold001 rebuild exon 2444039 2444346 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; Scaffold001 rebuild exon 2444513 2444990 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; Scaffold001 rebuild exon 2445076 2445154 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.1"; Scaffold001 rebuild transcript 2443568 2445154 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2443568 2443591 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild exon 2443659 2443687 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild exon 2443768 2443867 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild exon 2443939 2443970 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild exon 2444039 2444346 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild exon 2444513 2444990 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild exon 2445076 2445154 . - . gene_id "RvY_00877"; transcript_id "RvY_00877.2"; Scaffold001 rebuild transcript 2446300 2450445 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; gene_name "GART"; annotation "Trifunctional purine biosynthetic protein adenosine-3"; Pfam "[GARS_N] Phosphoribosylglycinamide synthetase, N domain|[Formyl_trans_N] Formyl transferase|[AIRS_C] AIR synthase related protein, C-terminal domain|[ATP-grasp_4] ATP-grasp domain|[GARS_C] Phosphoribosylglycinamide synthetase, C domain|[GARS_A] Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain|[AIRS] AIR synthase related protein, N-terminal domain"; CDD "phosphoribosylamine--glycine ligase; Provisional"; EC "EC2.1.2.2|EC6.3.3.1|EC6.3.4.13"; KO "K11787"; similar_genes "PUR2_CHICK(e-value:2.0e-62;bit-score:236.0)"; Scaffold001 rebuild exon 2446300 2446769 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2447002 2447485 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2447569 2447746 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2447813 2448032 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2448110 2448335 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2448405 2448603 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2448687 2448935 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2448997 2449631 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2449700 2449820 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2449888 2450027 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild exon 2450206 2450445 . + . gene_id "RvY_00878"; transcript_id "RvY_00878.1"; Scaffold001 rebuild transcript 2450915 2454756 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2450915 2450978 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2451075 2451294 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2451392 2451483 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2451565 2452143 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2452424 2452875 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2453007 2454092 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2454183 2454286 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2454361 2454593 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild exon 2454659 2454756 . + . gene_id "RvY_00879"; transcript_id "RvY_00879.1"; Scaffold001 rebuild transcript 2455029 2455352 . - . gene_id "RvY_00880"; transcript_id "RvY_00880.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2455029 2455352 . - . gene_id "RvY_00880"; transcript_id "RvY_00880.1"; Scaffold001 rebuild transcript 2455486 2456256 . - . gene_id "RvY_00881"; transcript_id "RvY_00881.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2455486 2456256 . - . gene_id "RvY_00881"; transcript_id "RvY_00881.1"; Scaffold001 rebuild transcript 2457006 2457876 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2457006 2457069 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.1"; Scaffold001 rebuild exon 2457159 2457304 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.1"; Scaffold001 rebuild exon 2457565 2457876 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.1"; Scaffold001 rebuild transcript 2457277 2457953 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2457277 2457304 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.2"; Scaffold001 rebuild exon 2457565 2457953 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.2"; Scaffold001 rebuild transcript 2456917 2457625 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2456917 2457069 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.3"; Scaffold001 rebuild exon 2457159 2457304 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.3"; Scaffold001 rebuild exon 2457565 2457625 . + . gene_id "RvY_00882"; transcript_id "RvY_00882.3"; Scaffold001 rebuild transcript 2459310 2460110 . - . gene_id "RvY_00883"; transcript_id "RvY_00883.1"; gene_name "FOXL"; annotation "putative Forkhead box protein L1"; Pfam "[Fork_head] Fork head domain"; KO "K09405"; similar_genes "FOXL1_HUMAN(e-value:3.5e-47;bit-score:186.0)"; Scaffold001 rebuild exon 2459310 2460110 . - . gene_id "RvY_00883"; transcript_id "RvY_00883.1"; Scaffold001 rebuild transcript 2462376 2463344 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2462376 2462501 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.1"; Scaffold001 rebuild exon 2462780 2462986 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.1"; Scaffold001 rebuild exon 2463243 2463344 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.1"; Scaffold001 rebuild transcript 2462705 2463344 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2462705 2462986 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.2"; Scaffold001 rebuild exon 2463243 2463344 . - . gene_id "RvY_00884"; transcript_id "RvY_00884.2"; Scaffold001 rebuild transcript 2464948 2466524 . - . gene_id "RvY_00885"; transcript_id "RvY_00885.1"; annotation "UPF0586 protein C9orf41 homolog"; Pfam "[N2227] N2227-like protein"; similar_genes "CI041_RAT(e-value:6.4e-53;bit-score:205.0)"; Scaffold001 rebuild exon 2464948 2465070 . - . gene_id "RvY_00885"; transcript_id "RvY_00885.1"; Scaffold001 rebuild exon 2465275 2465812 . - . gene_id "RvY_00885"; transcript_id "RvY_00885.1"; Scaffold001 rebuild exon 2465868 2466221 . - . gene_id "RvY_00885"; transcript_id "RvY_00885.1"; Scaffold001 rebuild exon 2466298 2466524 . - . gene_id "RvY_00885"; transcript_id "RvY_00885.1"; Scaffold001 rebuild transcript 2466960 2471167 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat"; Scaffold001 rebuild exon 2466960 2467077 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2467170 2467426 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2467592 2467766 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2467889 2468289 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2468512 2468882 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2468942 2469135 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2469283 2469632 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2469860 2470321 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2470487 2470729 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild exon 2470838 2471167 . + . gene_id "RvY_00886"; transcript_id "RvY_00886.1"; Scaffold001 rebuild transcript 2474633 2474809 . - . gene_id "RvY_00887"; transcript_id "RvY_00887.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2474633 2474809 . - . gene_id "RvY_00887"; transcript_id "RvY_00887.1"; Scaffold001 rebuild transcript 2476164 2476944 . + . gene_id "RvY_00888"; transcript_id "RvY_00888.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2476164 2476181 . + . gene_id "RvY_00888"; transcript_id "RvY_00888.1"; Scaffold001 rebuild exon 2476384 2476715 . + . gene_id "RvY_00888"; transcript_id "RvY_00888.1"; Scaffold001 rebuild exon 2476857 2476944 . + . gene_id "RvY_00888"; transcript_id "RvY_00888.1"; Scaffold001 rebuild transcript 2477849 2479574 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; gene_name "CELA2"; annotation "pancreatic elastase II [EC:3.4.21.71]"; Pfam "[DUF1986]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2477849 2477992 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2478062 2478084 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2478170 2478207 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2478410 2478438 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2478513 2478728 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2478787 2478874 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2479143 2479302 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild exon 2479391 2479574 . + . gene_id "RvY_00889"; transcript_id "RvY_00889.1"; Scaffold001 rebuild transcript 2480493 2481977 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; gene_name "K01310"; annotation "chymotrypsin [EC:3.4.21.1]"; Pfam "[DUF1986]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2480493 2480633 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2480722 2480744 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2480833 2480870 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2480941 2480969 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2481041 2481256 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2481361 2481448 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2481525 2481684 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild exon 2481797 2481977 . + . gene_id "RvY_00890"; transcript_id "RvY_00890.0"; Scaffold001 rebuild transcript 2482131 2484720 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; annotation "hypothetical protein."; Pfam "[Hemopexin]|[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.21"; similar_genes "NAS15_CAEEL(e-value:1.0e-08;bit-score:58.0)"; Scaffold001 rebuild exon 2482131 2482175 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2482240 2482566 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2482854 2483005 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2483125 2483753 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2483819 2483854 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2483921 2484025 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2484130 2484253 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2484337 2484558 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild exon 2484645 2484720 . - . gene_id "RvY_00891"; transcript_id "RvY_00891.1"; Scaffold001 rebuild transcript 2485041 2486354 . - . gene_id "RvY_00892"; transcript_id "RvY_00892.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2485041 2485056 . - . gene_id "RvY_00892"; transcript_id "RvY_00892.1"; Scaffold001 rebuild exon 2485996 2486354 . - . gene_id "RvY_00892"; transcript_id "RvY_00892.1"; Scaffold001 rebuild transcript 2486486 2489385 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; annotation "putative Uncharacterized protein C22orf9 homolog"; Pfam "[DUF2045] Uncharacterized conserved protein (DUF2045)"; similar_genes "CV009_MOUSE(e-value:5.4e-31;bit-score:132.0)"; Scaffold001 rebuild exon 2486486 2486699 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2486826 2487022 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2487120 2487227 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2487296 2487619 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2487681 2487860 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2487985 2488165 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2489011 2489065 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2489159 2489253 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild exon 2489342 2489385 . + . gene_id "RvY_00893"; transcript_id "RvY_00893.1"; Scaffold001 rebuild transcript 2489837 2491818 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; annotation "hypothetical protein."; Pfam "[Nup54] Nucleoporin complex subunit 54"; KO "K14308"; Scaffold001 rebuild exon 2489837 2490070 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; Scaffold001 rebuild exon 2490161 2490283 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; Scaffold001 rebuild exon 2490354 2490807 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; Scaffold001 rebuild exon 2490876 2491063 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; Scaffold001 rebuild exon 2491140 2491600 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; Scaffold001 rebuild exon 2491659 2491818 . - . gene_id "RvY_00894"; transcript_id "RvY_00894.1"; Scaffold001 rebuild transcript 2492449 2496761 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; annotation "hypothetical protein."; Pfam "[PIN_4] PIN domain"; Scaffold001 rebuild exon 2492449 2492627 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2492698 2492799 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2492888 2493008 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2493097 2493250 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2493321 2493404 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2493477 2493642 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2493705 2493899 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2493971 2494164 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2494243 2494533 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2494636 2494770 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2494853 2494992 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2495105 2495186 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2495301 2495434 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2495534 2495662 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2495724 2495940 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2496062 2496239 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2496305 2496477 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild exon 2496673 2496761 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.1"; Scaffold001 rebuild transcript 2492449 2495194 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; annotation "hypothetical protein."; Pfam "[PIN_4] PIN domain"; Scaffold001 rebuild exon 2492449 2492627 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2492698 2492799 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2492888 2493008 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2493097 2493250 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2493321 2493404 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2493477 2493642 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2493705 2493899 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2493971 2494164 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2494243 2494533 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2494636 2494770 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2494853 2494992 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild exon 2495105 2495194 . + . gene_id "RvY_00895"; transcript_id "RvY_00895.2"; Scaffold001 rebuild transcript 2496824 2497036 . - . gene_id "RvY_00896"; transcript_id "RvY_00896.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2496824 2497036 . - . gene_id "RvY_00896"; transcript_id "RvY_00896.1"; Scaffold001 rebuild transcript 2497728 2498901 . - . gene_id "RvY_00897"; transcript_id "RvY_00897.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2497728 2498111 . - . gene_id "RvY_00897"; transcript_id "RvY_00897.1"; Scaffold001 rebuild exon 2498169 2498303 . - . gene_id "RvY_00897"; transcript_id "RvY_00897.1"; Scaffold001 rebuild exon 2498719 2498901 . - . gene_id "RvY_00897"; transcript_id "RvY_00897.1"; Scaffold001 rebuild transcript 2499461 2511332 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; gene_name "USP9_24"; annotation "Probable ubiquitin carboxyl-terminal hydrolase FAF"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; EC "EC3.1.2.15"; KO "K11840"; similar_genes "FAF_DROME(e-value:1.4e-71;bit-score:267.0)"; Scaffold001 rebuild exon 2499461 2499992 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2500059 2500171 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2500247 2500747 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2500920 2501348 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2501561 2502046 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2502260 2502700 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2502776 2502942 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2503005 2503301 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2503370 2503504 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2503605 2504019 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2504210 2504848 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2505213 2505538 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2505599 2505836 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2506027 2506491 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2506628 2506925 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2507116 2507710 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2507772 2507876 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2508046 2508173 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2508237 2508761 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2508953 2509110 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2509185 2509373 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2509586 2509750 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2509832 2510012 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2510099 2510262 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2510345 2510563 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild exon 2510838 2511332 . + . gene_id "RvY_00898"; transcript_id "RvY_00898.1"; Scaffold001 rebuild transcript 2512790 2512969 . + . gene_id "RvY_00899"; transcript_id "RvY_00899.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2512790 2512969 . + . gene_id "RvY_00899"; transcript_id "RvY_00899.1"; Scaffold001 rebuild transcript 2513439 2514275 . - . gene_id "RvY_00900"; transcript_id "RvY_00900.1"; annotation "hypothetical protein."; Pfam "[Syntaxin-6_N] Syntaxin 6, N-terminal"; Scaffold001 rebuild exon 2513439 2514275 . - . gene_id "RvY_00900"; transcript_id "RvY_00900.1"; Scaffold001 rebuild transcript 2514898 2515789 . - . gene_id "RvY_00901"; transcript_id "RvY_00901.1"; gene_name "Rab11_like"; annotation "Ras-related protein Rab-11B"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; similar_genes "RB11B_RAT(e-value:1.8e-63;bit-score:240.0)"; Scaffold001 rebuild exon 2514898 2515103 . - . gene_id "RvY_00901"; transcript_id "RvY_00901.1"; Scaffold001 rebuild exon 2515164 2515357 . - . gene_id "RvY_00901"; transcript_id "RvY_00901.1"; Scaffold001 rebuild exon 2515435 2515621 . - . gene_id "RvY_00901"; transcript_id "RvY_00901.1"; Scaffold001 rebuild exon 2515753 2515789 . - . gene_id "RvY_00901"; transcript_id "RvY_00901.1"; Scaffold001 rebuild transcript 2516504 2518356 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2516504 2516681 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; Scaffold001 rebuild exon 2516800 2517275 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; Scaffold001 rebuild exon 2517411 2517569 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; Scaffold001 rebuild exon 2517634 2517702 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; Scaffold001 rebuild exon 2517785 2518111 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; Scaffold001 rebuild exon 2518183 2518356 . + . gene_id "RvY_00902"; transcript_id "RvY_00902.1"; Scaffold001 rebuild transcript 2521652 2521846 . - . gene_id "RvY_00903"; transcript_id "RvY_00903.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2521652 2521846 . - . gene_id "RvY_00903"; transcript_id "RvY_00903.1"; Scaffold001 rebuild transcript 2521757 2526494 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; gene_name "UGCG"; annotation "putative Ceramide glucosyltransferase"; Pfam "[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_transf_21] Glycosyl transferase family 21"; CDD "Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment."; EC "EC2.4.1.80"; KO "K00720"; similar_genes "CEGT_RAT(e-value:1.8e-33;bit-score:140.0)"; Scaffold001 rebuild exon 2521757 2521866 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2523680 2524013 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2524311 2524413 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2524508 2524609 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2524850 2525046 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2525102 2525367 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2525453 2525642 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild exon 2525925 2526494 . + . gene_id "RvY_00904"; transcript_id "RvY_00904.1"; Scaffold001 rebuild transcript 2527174 2527575 . + . gene_id "RvY_00905"; transcript_id "RvY_00905.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2527174 2527363 . + . gene_id "RvY_00905"; transcript_id "RvY_00905.1"; Scaffold001 rebuild exon 2527430 2527575 . + . gene_id "RvY_00905"; transcript_id "RvY_00905.1"; Scaffold001 rebuild transcript 2526948 2527336 . + . gene_id "RvY_00905"; transcript_id "RvY_00905.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2526948 2527007 . + . gene_id "RvY_00905"; transcript_id "RvY_00905.2"; Scaffold001 rebuild exon 2527082 2527336 . + . gene_id "RvY_00905"; transcript_id "RvY_00905.2"; Scaffold001 rebuild transcript 2527359 2527535 . - . gene_id "RvY_00906"; transcript_id "RvY_00906.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2527359 2527535 . - . gene_id "RvY_00906"; transcript_id "RvY_00906.1"; Scaffold001 rebuild transcript 2528849 2530102 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; annotation "hypothetical protein."; Pfam "[Tim44] Tim44-like domain"; Scaffold001 rebuild exon 2528849 2528892 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2528985 2529093 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2529235 2529306 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2529388 2529457 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2529538 2529597 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2529672 2529700 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2529768 2529868 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild exon 2529973 2530102 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.1"; Scaffold001 rebuild transcript 2529817 2530271 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.2"; annotation "hypothetical protein."; Pfam "[Tim44] Tim44-like domain"; Scaffold001 rebuild exon 2529817 2529868 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.2"; Scaffold001 rebuild exon 2529973 2530271 . + . gene_id "RvY_00907"; transcript_id "RvY_00907.2"; Scaffold001 rebuild transcript 2529566 2529745 . - . gene_id "RvY_00908"; transcript_id "RvY_00908.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2529566 2529745 . - . gene_id "RvY_00908"; transcript_id "RvY_00908.1"; Scaffold001 rebuild transcript 2532709 2535407 . + . gene_id "RvY_00909"; transcript_id "RvY_00909.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR37_XENTR(e-value:2.0e-09;bit-score:60.0)"; Scaffold001 rebuild exon 2532709 2533462 . + . gene_id "RvY_00909"; transcript_id "RvY_00909.1"; Scaffold001 rebuild exon 2533991 2534137 . + . gene_id "RvY_00909"; transcript_id "RvY_00909.1"; Scaffold001 rebuild exon 2534351 2534840 . + . gene_id "RvY_00909"; transcript_id "RvY_00909.1"; Scaffold001 rebuild exon 2535158 2535407 . + . gene_id "RvY_00909"; transcript_id "RvY_00909.1"; Scaffold001 rebuild transcript 2535986 2536219 . - . gene_id "RvY_00910"; transcript_id "RvY_00910.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2535986 2536219 . - . gene_id "RvY_00910"; transcript_id "RvY_00910.1"; Scaffold001 rebuild transcript 2536227 2536532 . - . gene_id "RvY_00911"; transcript_id "RvY_00911.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2536227 2536532 . - . gene_id "RvY_00911"; transcript_id "RvY_00911.1"; Scaffold001 rebuild transcript 2539922 2540862 . + . gene_id "RvY_00912"; transcript_id "RvY_00912.1"; annotation "hypothetical protein."; Pfam "[Folate_rec] Folate receptor family"; Scaffold001 rebuild exon 2539922 2540093 . + . gene_id "RvY_00912"; transcript_id "RvY_00912.1"; Scaffold001 rebuild exon 2540170 2540271 . + . gene_id "RvY_00912"; transcript_id "RvY_00912.1"; Scaffold001 rebuild exon 2540543 2540862 . + . gene_id "RvY_00912"; transcript_id "RvY_00912.1"; Scaffold001 rebuild transcript 2541219 2545992 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; annotation "hypothetical protein."; Pfam "[Pre-SET] Pre-SET motif"; Scaffold001 rebuild exon 2541219 2541644 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2541891 2542605 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2542872 2543500 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2543728 2544149 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2544338 2544550 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2544666 2544827 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2544908 2544949 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2545018 2545287 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild exon 2545350 2545992 . - . gene_id "RvY_00913"; transcript_id "RvY_00913.1"; Scaffold001 rebuild transcript 2547001 2548637 . + . gene_id "RvY_00914"; transcript_id "RvY_00914.1"; annotation "putative Probable rRNA-processing protein EBP2"; Pfam "[Ebp2] Eukaryotic rRNA processing protein EBP2"; KO "K14823"; similar_genes "EBP2_MOUSE(e-value:1.8e-29;bit-score:127.0)"; Scaffold001 rebuild exon 2547001 2547114 . + . gene_id "RvY_00914"; transcript_id "RvY_00914.1"; Scaffold001 rebuild exon 2547194 2547277 . + . gene_id "RvY_00914"; transcript_id "RvY_00914.1"; Scaffold001 rebuild exon 2547380 2547606 . + . gene_id "RvY_00914"; transcript_id "RvY_00914.1"; Scaffold001 rebuild exon 2547670 2548071 . + . gene_id "RvY_00914"; transcript_id "RvY_00914.1"; Scaffold001 rebuild exon 2548424 2548637 . + . gene_id "RvY_00914"; transcript_id "RvY_00914.1"; Scaffold001 rebuild transcript 2548731 2549135 . - . gene_id "RvY_00915"; transcript_id "RvY_00915.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2548731 2549135 . - . gene_id "RvY_00915"; transcript_id "RvY_00915.1"; Scaffold001 rebuild transcript 2549254 2551952 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; annotation "hypothetical protein."; Pfam "[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; EC "EC1.5.3.16"; similar_genes "SMOX_HUMAN(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 2549254 2549485 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; Scaffold001 rebuild exon 2549589 2549761 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; Scaffold001 rebuild exon 2550194 2550423 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; Scaffold001 rebuild exon 2550745 2551228 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; Scaffold001 rebuild exon 2551398 2551773 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; Scaffold001 rebuild exon 2551852 2551952 . + . gene_id "RvY_00916"; transcript_id "RvY_00916.1"; Scaffold001 rebuild transcript 2551977 2552387 . + . gene_id "RvY_00917"; transcript_id "RvY_00917.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2551977 2552133 . + . gene_id "RvY_00917"; transcript_id "RvY_00917.1"; Scaffold001 rebuild exon 2552209 2552387 . + . gene_id "RvY_00917"; transcript_id "RvY_00917.1"; Scaffold001 rebuild transcript 2552031 2553673 . - . gene_id "RvY_00918"; transcript_id "RvY_00918.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2552031 2552357 . - . gene_id "RvY_00918"; transcript_id "RvY_00918.1"; Scaffold001 rebuild exon 2552685 2553295 . - . gene_id "RvY_00918"; transcript_id "RvY_00918.1"; Scaffold001 rebuild exon 2553520 2553673 . - . gene_id "RvY_00918"; transcript_id "RvY_00918.1"; Scaffold001 rebuild transcript 2554277 2555657 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 2554277 2554797 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.1"; Scaffold001 rebuild exon 2554866 2555039 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.1"; Scaffold001 rebuild exon 2555105 2555391 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.1"; Scaffold001 rebuild exon 2555482 2555657 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.1"; Scaffold001 rebuild transcript 2554277 2555657 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 2554277 2554415 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; Scaffold001 rebuild exon 2554527 2554589 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; Scaffold001 rebuild exon 2554662 2554797 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; Scaffold001 rebuild exon 2554866 2555039 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; Scaffold001 rebuild exon 2555105 2555391 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; Scaffold001 rebuild exon 2555482 2555657 . + . gene_id "RvY_00919"; transcript_id "RvY_00919.2"; Scaffold001 rebuild transcript 2556621 2557817 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 2556621 2556709 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; Scaffold001 rebuild exon 2556792 2556908 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; Scaffold001 rebuild exon 2556983 2557027 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; Scaffold001 rebuild exon 2557143 2557195 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; Scaffold001 rebuild exon 2557275 2557514 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; Scaffold001 rebuild exon 2557576 2557817 . + . gene_id "RvY_00920"; transcript_id "RvY_00920.1"; Scaffold001 rebuild transcript 2557953 2559929 . - . gene_id "RvY_00921"; transcript_id "RvY_00921.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2557953 2558161 . - . gene_id "RvY_00921"; transcript_id "RvY_00921.1"; Scaffold001 rebuild exon 2558231 2558832 . - . gene_id "RvY_00921"; transcript_id "RvY_00921.1"; Scaffold001 rebuild exon 2559057 2559231 . - . gene_id "RvY_00921"; transcript_id "RvY_00921.1"; Scaffold001 rebuild exon 2559423 2559662 . - . gene_id "RvY_00921"; transcript_id "RvY_00921.1"; Scaffold001 rebuild exon 2559773 2559929 . - . gene_id "RvY_00921"; transcript_id "RvY_00921.1"; Scaffold001 rebuild transcript 2562730 2567889 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; gene_name "Ig1_Robo"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Herpes_gE] Alphaherpesvirus glycoprotein E|[fn3] Fibronectin type III domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site."; similar_genes "ROBO1_MOUSE(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 2562730 2562817 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2562907 2563320 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2563500 2564011 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2564286 2564608 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2564676 2565028 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2565150 2565791 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2565854 2566177 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2566277 2567260 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2567348 2567599 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild exon 2567669 2567889 . + . gene_id "RvY_00922"; transcript_id "RvY_00922.1"; Scaffold001 rebuild transcript 2563679 2564271 . - . gene_id "RvY_00923"; transcript_id "RvY_00923.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2563679 2563998 . - . gene_id "RvY_00923"; transcript_id "RvY_00923.1"; Scaffold001 rebuild exon 2564262 2564271 . - . gene_id "RvY_00923"; transcript_id "RvY_00923.1"; Scaffold001 rebuild transcript 2568441 2570546 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold001 rebuild exon 2568441 2568800 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild exon 2568995 2569324 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild exon 2569434 2569650 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild exon 2569722 2570078 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild exon 2570158 2570207 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild exon 2570326 2570423 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild exon 2570507 2570546 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.1"; Scaffold001 rebuild transcript 2568441 2570546 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold001 rebuild exon 2568441 2568800 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild exon 2568995 2569282 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild exon 2569434 2569650 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild exon 2569722 2570078 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild exon 2570158 2570207 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild exon 2570326 2570423 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild exon 2570507 2570546 . - . gene_id "RvY_00924"; transcript_id "RvY_00924.2"; Scaffold001 rebuild transcript 2572107 2572553 . + . gene_id "RvY_00925"; transcript_id "RvY_00925.1"; gene_name "bolA"; annotation "BolA protein"; Pfam "[BolA] BolA-like protein"; CDD "transcriptional regulator BolA; Provisional"; KO "K05527"; similar_genes "BOLA_VIBAL(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 2572107 2572553 . + . gene_id "RvY_00925"; transcript_id "RvY_00925.1"; Scaffold001 rebuild transcript 2572895 2575684 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; annotation "hypothetical protein."; Pfam "[OST-HTH] OST-HTH/LOTUS domain"; Scaffold001 rebuild exon 2572895 2573326 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2573604 2573861 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2573928 2574127 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2574267 2574424 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2574496 2574677 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2574836 2574968 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2575074 2575154 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2575227 2575402 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild exon 2575472 2575684 . - . gene_id "RvY_00926"; transcript_id "RvY_00926.1"; Scaffold001 rebuild transcript 2576729 2580895 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; gene_name "FPL"; annotation "hypothetical protein."; Pfam "[FPL] Uncharacterised conserved protein"; CDD "Uncharacterized conserved protein. This entry represents an N-terminal region of approximately 150 residues of a family of proteins of unknown function. It contains a highly conserved FPL motif."; similar_genes "GOP1_CAEEL(e-value:1.9e-16;bit-score:84.0)"; Scaffold001 rebuild exon 2576729 2577013 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2577125 2577290 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2577353 2577963 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2578204 2578521 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2578586 2578743 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2578827 2579335 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2579486 2579775 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2579841 2580017 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2580103 2580353 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2580421 2580656 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild exon 2580729 2580895 . - . gene_id "RvY_00927"; transcript_id "RvY_00927.1"; Scaffold001 rebuild transcript 2581563 2583479 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2581563 2581722 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild exon 2581795 2582511 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild exon 2582577 2582637 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild exon 2582743 2582843 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild exon 2582929 2583065 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild exon 2583146 2583301 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild exon 2583387 2583479 . + . gene_id "RvY_00928"; transcript_id "RvY_00928.1"; Scaffold001 rebuild transcript 2584654 2585259 . + . gene_id "RvY_00929"; transcript_id "RvY_00929.1"; gene_name "DnaJ"; annotation "hypothetical protein."; Pfam "[DnaJ]"; CDD "DnaJ molecular chaperone homology domain."; Scaffold001 rebuild exon 2584654 2584746 . + . gene_id "RvY_00929"; transcript_id "RvY_00929.1"; Scaffold001 rebuild exon 2584884 2585044 . + . gene_id "RvY_00929"; transcript_id "RvY_00929.1"; Scaffold001 rebuild exon 2585112 2585259 . + . gene_id "RvY_00929"; transcript_id "RvY_00929.1"; Scaffold001 rebuild transcript 2585599 2586528 . + . gene_id "RvY_00930"; transcript_id "RvY_00930.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2585599 2585867 . + . gene_id "RvY_00930"; transcript_id "RvY_00930.1"; Scaffold001 rebuild exon 2586000 2586287 . + . gene_id "RvY_00930"; transcript_id "RvY_00930.1"; Scaffold001 rebuild exon 2586372 2586528 . + . gene_id "RvY_00930"; transcript_id "RvY_00930.1"; Scaffold001 rebuild transcript 2587209 2588063 . + . gene_id "RvY_00931"; transcript_id "RvY_00931.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "glutathione s-transferase; Provisional"; EC "EC2.5.1.18|EC5.3.99.2"; KO "K00799"; similar_genes "HPGDS_CHICK(e-value:3.6e-15;bit-score:79.0)"; Scaffold001 rebuild exon 2587209 2587257 . + . gene_id "RvY_00931"; transcript_id "RvY_00931.1"; Scaffold001 rebuild exon 2587349 2587591 . + . gene_id "RvY_00931"; transcript_id "RvY_00931.1"; Scaffold001 rebuild exon 2587663 2587848 . + . gene_id "RvY_00931"; transcript_id "RvY_00931.1"; Scaffold001 rebuild exon 2587912 2588063 . + . gene_id "RvY_00931"; transcript_id "RvY_00931.1"; Scaffold001 rebuild transcript 2589112 2590080 . + . gene_id "RvY_00932"; transcript_id "RvY_00932.1"; gene_name "PTGDS"; annotation "prostaglandin-H2 D-isomerase [EC:5.3.99.2]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "glutathione s-transferase; Provisional"; EC "EC5.3.99.2"; KO "K01830"; similar_genes "HPGDS_CHICK(e-value:1.0e-23;bit-score:108.0)"; Scaffold001 rebuild exon 2589112 2589169 . + . gene_id "RvY_00932"; transcript_id "RvY_00932.1"; Scaffold001 rebuild exon 2589224 2589466 . + . gene_id "RvY_00932"; transcript_id "RvY_00932.1"; Scaffold001 rebuild exon 2589544 2589729 . + . gene_id "RvY_00932"; transcript_id "RvY_00932.1"; Scaffold001 rebuild exon 2589929 2590080 . + . gene_id "RvY_00932"; transcript_id "RvY_00932.1"; Scaffold001 rebuild transcript 2591079 2591969 . + . gene_id "RvY_00933"; transcript_id "RvY_00933.1"; gene_name "PTGDS"; annotation "prostaglandin-H2 D-isomerase [EC:5.3.99.2]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "glutathione s-transferase; Provisional"; EC "EC5.3.99.2"; KO "K01830"; similar_genes "HPGDS_HUMAN(e-value:2.1e-17;bit-score:87.0)"; Scaffold001 rebuild exon 2591079 2591136 . + . gene_id "RvY_00933"; transcript_id "RvY_00933.1"; Scaffold001 rebuild exon 2591201 2591443 . + . gene_id "RvY_00933"; transcript_id "RvY_00933.1"; Scaffold001 rebuild exon 2591515 2591700 . + . gene_id "RvY_00933"; transcript_id "RvY_00933.1"; Scaffold001 rebuild exon 2591818 2591969 . + . gene_id "RvY_00933"; transcript_id "RvY_00933.1"; Scaffold001 rebuild transcript 2592248 2594033 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2592248 2592432 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2592522 2592645 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2592769 2592977 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2593065 2593257 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2593333 2593428 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2593490 2593596 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2593660 2593814 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild exon 2593897 2594033 . - . gene_id "RvY_00934"; transcript_id "RvY_00934.1"; Scaffold001 rebuild transcript 2594561 2595770 . + . gene_id "RvY_00935"; transcript_id "RvY_00935.1"; gene_name "SNAP29"; annotation "synaptosomal-associated protein, 29kDa"; Pfam "[SNARE]|[V-SNARE_C] Snare region anchored in the vesicle membrane C-terminus"; KO "K08509"; Scaffold001 rebuild exon 2594561 2594974 . + . gene_id "RvY_00935"; transcript_id "RvY_00935.1"; Scaffold001 rebuild exon 2595228 2595770 . + . gene_id "RvY_00935"; transcript_id "RvY_00935.1"; Scaffold001 rebuild transcript 2596053 2597390 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2596053 2596194 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; Scaffold001 rebuild exon 2596256 2596370 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; Scaffold001 rebuild exon 2596443 2596595 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; Scaffold001 rebuild exon 2596672 2596903 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; Scaffold001 rebuild exon 2596983 2597213 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; Scaffold001 rebuild exon 2597355 2597390 . - . gene_id "RvY_00936"; transcript_id "RvY_00936.1"; Scaffold001 rebuild transcript 2597326 2597544 . + . gene_id "RvY_00937"; transcript_id "RvY_00937.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2597326 2597544 . + . gene_id "RvY_00937"; transcript_id "RvY_00937.1"; Scaffold001 rebuild transcript 2598231 2600697 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; gene_name "PGK"; annotation "Phosphoglycerate kinase 2"; Pfam "[PGK] Phosphoglycerate kinase"; EC "EC2.7.2.3"; KO "K00927"; similar_genes "PGK2_MOUSE(e-value:2.4e-101;bit-score:366.0)"; Scaffold001 rebuild exon 2598231 2598433 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2598960 2599112 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2599180 2599431 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2599514 2599633 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2599735 2599849 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2599922 2600102 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2600190 2600265 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2600324 2600523 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild exon 2600636 2600697 . + . gene_id "RvY_00938"; transcript_id "RvY_00938.1"; Scaffold001 rebuild transcript 2602063 2603940 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.1"; gene_name "AVPR1A"; annotation "arginine vasopressin receptor 1A"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04226"; similar_genes "(1)OXYR_HUMAN(e-value:2.0e-11;bit-score:67.0)(2)CTR1_OCTVU(e-value:3.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 2602063 2602484 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.1"; Scaffold001 rebuild exon 2602919 2603114 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.1"; Scaffold001 rebuild exon 2603374 2603655 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.1"; Scaffold001 rebuild exon 2603734 2603940 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.1"; Scaffold001 rebuild transcript 2602482 2604468 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.2"; gene_name "AVPR1A"; annotation "arginine vasopressin receptor 1A"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04226"; similar_genes "(1)OXYR_HUMAN(e-value:2.0e-11;bit-score:67.0)(2)CTR1_OCTVU(e-value:3.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 2602482 2602486 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.2"; Scaffold001 rebuild exon 2602919 2603114 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.2"; Scaffold001 rebuild exon 2603374 2603655 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.2"; Scaffold001 rebuild exon 2603734 2604003 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.2"; Scaffold001 rebuild exon 2604340 2604468 . - . gene_id "RvY_00939"; transcript_id "RvY_00939.2"; Scaffold001 rebuild transcript 2603001 2603538 . + . gene_id "RvY_00940"; transcript_id "RvY_00940.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2603001 2603103 . + . gene_id "RvY_00940"; transcript_id "RvY_00940.1"; Scaffold001 rebuild exon 2603384 2603538 . + . gene_id "RvY_00940"; transcript_id "RvY_00940.1"; Scaffold001 rebuild transcript 2607192 2608189 . + . gene_id "RvY_00941"; transcript_id "RvY_00941.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2607192 2607578 . + . gene_id "RvY_00941"; transcript_id "RvY_00941.1"; Scaffold001 rebuild exon 2607635 2608189 . + . gene_id "RvY_00941"; transcript_id "RvY_00941.1"; Scaffold001 rebuild transcript 2608449 2609454 . - . gene_id "RvY_00942"; transcript_id "RvY_00942.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2608449 2608985 . - . gene_id "RvY_00942"; transcript_id "RvY_00942.1"; Scaffold001 rebuild exon 2609073 2609204 . - . gene_id "RvY_00942"; transcript_id "RvY_00942.1"; Scaffold001 rebuild exon 2609320 2609454 . - . gene_id "RvY_00942"; transcript_id "RvY_00942.1"; Scaffold001 rebuild transcript 2609779 2614075 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2609779 2609951 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2610686 2610785 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2610891 2611045 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2611113 2611378 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2611450 2611627 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2611698 2612672 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2612792 2613182 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2613245 2613606 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2613689 2613941 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild exon 2614031 2614075 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.1"; Scaffold001 rebuild transcript 2609779 2614075 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 2609779 2609951 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2610686 2610785 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2610891 2611045 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2611113 2611378 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2611450 2611627 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2611698 2612672 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2612792 2613182 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2613245 2613603 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2613689 2613941 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild exon 2614031 2614075 . - . gene_id "RvY_00943"; transcript_id "RvY_00943.2"; Scaffold001 rebuild transcript 2615548 2616596 . + . gene_id "RvY_00944"; transcript_id "RvY_00944.1"; product "CAHS1"; annotation "CAHS1 | hypothetical protein."; Scaffold001 rebuild exon 2615548 2615743 . + . gene_id "RvY_00944"; transcript_id "RvY_00944.1"; Scaffold001 rebuild exon 2615921 2616277 . + . gene_id "RvY_00944"; transcript_id "RvY_00944.1"; Scaffold001 rebuild exon 2616339 2616419 . + . gene_id "RvY_00944"; transcript_id "RvY_00944.1"; Scaffold001 rebuild exon 2616517 2616596 . + . gene_id "RvY_00944"; transcript_id "RvY_00944.1"; Scaffold001 rebuild transcript 2617244 2618204 . + . gene_id "RvY_00945"; transcript_id "RvY_00945.1"; product "CAHS5"; annotation "CAHS5 | hypothetical protein."; Scaffold001 rebuild exon 2617244 2617783 . + . gene_id "RvY_00945"; transcript_id "RvY_00945.1"; Scaffold001 rebuild exon 2617894 2618041 . + . gene_id "RvY_00945"; transcript_id "RvY_00945.1"; Scaffold001 rebuild exon 2618107 2618204 . + . gene_id "RvY_00945"; transcript_id "RvY_00945.1"; Scaffold001 rebuild transcript 2618953 2619923 . + . gene_id "RvY_00946"; transcript_id "RvY_00946.1"; product "CAHS2"; annotation "CAHS2 | hypothetical protein."; Scaffold001 rebuild exon 2618953 2619045 . + . gene_id "RvY_00946"; transcript_id "RvY_00946.1"; Scaffold001 rebuild exon 2619194 2619539 . + . gene_id "RvY_00946"; transcript_id "RvY_00946.1"; Scaffold001 rebuild exon 2619596 2619714 . + . gene_id "RvY_00946"; transcript_id "RvY_00946.1"; Scaffold001 rebuild exon 2619831 2619923 . + . gene_id "RvY_00946"; transcript_id "RvY_00946.1"; Scaffold001 rebuild transcript 2620668 2621333 . - . gene_id "RvY_00947"; transcript_id "RvY_00947.1"; gene_name "ATPeF1O"; annotation "F-type H+-transporting ATPase oligomycin sensitivity conferral protein [EC:3.6.3.14]"; Pfam "[OSCP] ATP synthase delta (OSCP) subunit"; EC "EC3.6.3.14"; KO "K02137"; similar_genes "ATPO_HUMAN(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 2620668 2621333 . - . gene_id "RvY_00947"; transcript_id "RvY_00947.1"; Scaffold001 rebuild transcript 2621997 2622978 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; gene_name "ATPeVPF"; annotation "V-type H+-transporting ATPase 21kDa proteolipid subunit [EC:3.6.3.14]"; Pfam "[ATP-synt_C] ATP synthase subunit C"; CDD "vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells."; EC "EC3.6.3.14"; KO "K03661"; similar_genes "VATO_BOVIN(e-value:6.7e-25;bit-score:112.0)"; Scaffold001 rebuild exon 2621997 2622063 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; Scaffold001 rebuild exon 2622117 2622165 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; Scaffold001 rebuild exon 2622232 2622315 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; Scaffold001 rebuild exon 2622405 2622552 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; Scaffold001 rebuild exon 2622626 2622871 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; Scaffold001 rebuild exon 2622946 2622978 . + . gene_id "RvY_00948"; transcript_id "RvY_00948.1"; Scaffold001 rebuild transcript 2623787 2624565 . + . gene_id "RvY_00949"; transcript_id "RvY_00949.1"; gene_name "ATPeVPF"; annotation "V-type H+-transporting ATPase 21kDa proteolipid subunit [EC:3.6.3.14]"; Pfam "[ATP-synt_C] ATP synthase subunit C"; CDD "vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells."; EC "EC3.6.3.14"; KO "K03661"; similar_genes "VATO_BOVIN(e-value:1.1e-22;bit-score:104.0)"; Scaffold001 rebuild exon 2623787 2623845 . + . gene_id "RvY_00949"; transcript_id "RvY_00949.1"; Scaffold001 rebuild exon 2623963 2624110 . + . gene_id "RvY_00949"; transcript_id "RvY_00949.1"; Scaffold001 rebuild exon 2624235 2624480 . + . gene_id "RvY_00949"; transcript_id "RvY_00949.1"; Scaffold001 rebuild exon 2624542 2624565 . + . gene_id "RvY_00949"; transcript_id "RvY_00949.1"; Scaffold001 rebuild transcript 2625240 2628856 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; annotation "putative Protein muscleblind"; KO "K14943"; similar_genes "MBL_DROME(e-value:2.3e-42;bit-score:170.0)"; Scaffold001 rebuild exon 2625240 2625265 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2625489 2625822 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2625953 2626378 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2626690 2626759 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2626845 2626863 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2626927 2627290 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2627580 2627759 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2628584 2628706 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild exon 2628800 2628856 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.1"; Scaffold001 rebuild transcript 2625240 2628856 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; annotation "putative Protein muscleblind"; KO "K14943"; similar_genes "MBL_DROME(e-value:2.3e-42;bit-score:170.0)"; Scaffold001 rebuild exon 2625240 2625265 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2625489 2625822 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2626690 2626759 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2626845 2626863 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2626927 2627290 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2627580 2627759 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2628584 2628706 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild exon 2628800 2628856 . - . gene_id "RvY_00950"; transcript_id "RvY_00950.2"; Scaffold001 rebuild transcript 2630418 2632209 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; gene_name "ATG4"; annotation "putative Cysteine protease ATG4A"; Pfam "[Peptidase_C54] Peptidase family C54"; EC "EC3.4.22.-"; KO "K08342"; similar_genes "ATG4A_XENLA(e-value:1.7e-40;bit-score:164.0)"; Scaffold001 rebuild exon 2630418 2630686 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2630791 2630970 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2631053 2631177 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2631267 2631331 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2631398 2631704 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2631771 2631865 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2631972 2632018 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild exon 2632119 2632209 . - . gene_id "RvY_00951"; transcript_id "RvY_00951.1"; Scaffold001 rebuild transcript 2632889 2633359 . - . gene_id "RvY_00952"; transcript_id "RvY_00952.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2632889 2633359 . - . gene_id "RvY_00952"; transcript_id "RvY_00952.1"; Scaffold001 rebuild transcript 2633801 2634601 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.1"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain"; Scaffold001 rebuild exon 2633801 2633866 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.1"; Scaffold001 rebuild exon 2633951 2634103 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.1"; Scaffold001 rebuild exon 2634225 2634452 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.1"; Scaffold001 rebuild exon 2634545 2634601 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.1"; Scaffold001 rebuild transcript 2634299 2634645 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.2"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain"; Scaffold001 rebuild exon 2634299 2634452 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.2"; Scaffold001 rebuild exon 2634545 2634645 . + . gene_id "RvY_00953"; transcript_id "RvY_00953.2"; Scaffold001 rebuild transcript 2635588 2640388 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; annotation "hypothetical protein."; Pfam "[MRF_C1] Myelin gene regulatory factor -C-terminal domain 1|[Peptidase_S74] Chaperone of endosialidase|[NDT80_PhoG] NDT80 / PhoG like DNA-binding family"; similar_genes "MRF_XENLA(e-value:4.6e-11;bit-score:66.0)"; Scaffold001 rebuild exon 2635588 2636030 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; Scaffold001 rebuild exon 2636141 2636329 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; Scaffold001 rebuild exon 2636405 2637188 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; Scaffold001 rebuild exon 2637479 2638005 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; Scaffold001 rebuild exon 2638192 2638594 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; Scaffold001 rebuild exon 2639708 2640388 . - . gene_id "RvY_00954"; transcript_id "RvY_00954.1"; Scaffold001 rebuild transcript 2640967 2641173 . + . gene_id "RvY_00955"; transcript_id "RvY_00955.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2640967 2641173 . + . gene_id "RvY_00955"; transcript_id "RvY_00955.1"; Scaffold001 rebuild transcript 2642034 2645664 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; gene_name "ascorbase"; annotation "hypothetical protein."; Pfam "[Cu-oxidase_3] Multicopper oxidase|[Cu-oxidase] Multicopper oxidase|[Cu-oxidase_2] Multicopper oxidase"; CDD "L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases."; EC "EC1.10.3.2"; similar_genes "LAC1_EMENI(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 2642034 2642282 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild exon 2642592 2642995 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild exon 2643532 2644058 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild exon 2644345 2644450 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild exon 2644522 2644866 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild exon 2645159 2645274 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild exon 2645366 2645664 . - . gene_id "RvY_00956"; transcript_id "RvY_00956.1"; Scaffold001 rebuild transcript 2647226 2649254 . + . gene_id "RvY_00957"; transcript_id "RvY_00957.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 2647226 2647413 . + . gene_id "RvY_00957"; transcript_id "RvY_00957.1"; Scaffold001 rebuild exon 2647665 2648115 . + . gene_id "RvY_00957"; transcript_id "RvY_00957.1"; Scaffold001 rebuild exon 2648248 2648343 . + . gene_id "RvY_00957"; transcript_id "RvY_00957.1"; Scaffold001 rebuild exon 2648685 2649254 . + . gene_id "RvY_00957"; transcript_id "RvY_00957.1"; Scaffold001 rebuild transcript 2651386 2657878 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; gene_name "SKI2"; annotation "Helicase SKI2W"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[DSHCT] DSHCT (NUC185) domain|[rRNA_proc-arch] rRNA-processing arch domain"; CDD "Superfamily II RNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K12599"; similar_genes "SKIV2_HUMAN(e-value:7.6e-58;bit-score:221.0)"; Scaffold001 rebuild exon 2651386 2651778 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2652031 2652217 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2652480 2652848 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2652910 2653055 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2653349 2653779 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2653984 2654099 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2654173 2654437 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2654571 2654751 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2654830 2655014 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2655234 2655527 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2655836 2656171 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2656395 2656593 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2656885 2657221 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild exon 2657535 2657878 . + . gene_id "RvY_00958"; transcript_id "RvY_00958.1"; Scaffold001 rebuild transcript 2658247 2659463 . - . gene_id "RvY_00959"; transcript_id "RvY_00959.1"; gene_name "B3GAT3"; annotation "galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 [EC:2.4.1.135]"; Pfam "[Glyco_transf_43] Glycosyltransferase family 43"; CDD "Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The Scaffold001 rebuild exon 2658247 2658593 . - . gene_id "RvY_00959"; transcript_id "RvY_00959.1"; Scaffold001 rebuild exon 2658911 2659463 . - . gene_id "RvY_00959"; transcript_id "RvY_00959.1"; Scaffold001 rebuild transcript 2659471 2659830 . - . gene_id "RvY_00960"; transcript_id "RvY_00960.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2659471 2659830 . - . gene_id "RvY_00960"; transcript_id "RvY_00960.1"; Scaffold001 rebuild transcript 2659950 2661090 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2659950 2660106 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; Scaffold001 rebuild exon 2660175 2660237 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; Scaffold001 rebuild exon 2660320 2660400 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; Scaffold001 rebuild exon 2660483 2660541 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; Scaffold001 rebuild exon 2660698 2660854 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; Scaffold001 rebuild exon 2660933 2661090 . + . gene_id "RvY_00961"; transcript_id "RvY_00961.1"; Scaffold001 rebuild transcript 2661672 2662018 . + . gene_id "RvY_00962"; transcript_id "RvY_00962.1"; annotation "hypothetical protein."; Pfam "[Defensin_2] Arthropod defensin"; Scaffold001 rebuild exon 2661672 2661785 . + . gene_id "RvY_00962"; transcript_id "RvY_00962.1"; Scaffold001 rebuild exon 2661869 2662018 . + . gene_id "RvY_00962"; transcript_id "RvY_00962.1"; Scaffold001 rebuild transcript 2662211 2664859 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2662211 2662558 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; Scaffold001 rebuild exon 2662631 2662837 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; Scaffold001 rebuild exon 2662939 2663012 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; Scaffold001 rebuild exon 2663772 2664274 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; Scaffold001 rebuild exon 2664531 2664681 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; Scaffold001 rebuild exon 2664775 2664859 . - . gene_id "RvY_00963"; transcript_id "RvY_00963.1"; Scaffold001 rebuild transcript 2665812 2668596 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; gene_name "PAK1"; annotation "Serine/threonine-protein kinase PAK 1"; Pfam "[APH] Phosphotransferase enzyme family|[PBD] P21-Rho-binding domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others."; EC "EC2.7.11.1"; KO "K04409"; similar_genes "PAK1_MOUSE(e-value:7.5e-126;bit-score:447.0)"; Scaffold001 rebuild exon 2665812 2666057 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2666320 2666419 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2666576 2666642 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2666715 2666765 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2666831 2666997 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2667074 2667286 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2667345 2667652 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2667721 2667755 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2667838 2667988 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2668074 2668110 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2668174 2668243 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2668334 2668398 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild exon 2668520 2668596 . - . gene_id "RvY_00964"; transcript_id "RvY_00964.1"; Scaffold001 rebuild transcript 2669763 2670830 . + . gene_id "RvY_00965"; transcript_id "RvY_00965.1"; gene_name "orn"; annotation "oligoribonuclease [EC:3.1.-.-]"; Pfam "[RNase_T] Exonuclease"; CDD "Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold001 rebuild exon 2669763 2669876 . + . gene_id "RvY_00965"; transcript_id "RvY_00965.1"; Scaffold001 rebuild exon 2669938 2670021 . + . gene_id "RvY_00965"; transcript_id "RvY_00965.1"; Scaffold001 rebuild exon 2670092 2670160 . + . gene_id "RvY_00965"; transcript_id "RvY_00965.1"; Scaffold001 rebuild exon 2670222 2670389 . + . gene_id "RvY_00965"; transcript_id "RvY_00965.1"; Scaffold001 rebuild exon 2670756 2670830 . + . gene_id "RvY_00965"; transcript_id "RvY_00965.1"; Scaffold001 rebuild transcript 2671177 2673578 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; annotation "hypothetical protein."; Pfam "[DUF4078]"; similar_genes "CC019_MOUSE(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 2671177 2671640 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2671755 2671862 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2671946 2672173 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2672269 2672417 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2672527 2672739 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2672830 2673066 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2673164 2673267 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2673338 2673457 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild exon 2673540 2673578 . - . gene_id "RvY_00966"; transcript_id "RvY_00966.1"; Scaffold001 rebuild transcript 2675050 2678322 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; gene_name "YSH1"; annotation "Cleavage and polyadenylation specificity factor subunit 2"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Beta-Casp]|[Lactamase_B_2] Beta-lactamase superfamily domain|[CPSF100_C] Cleavage and polyadenylation factor 2 C-terminal|[RMMBL] RNA-metabolising metallo-beta-lactamase"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; KO "K14402"; similar_genes "CPSF2_XENLA(e-value:1.3e-110;bit-score:397.0)"; Scaffold001 rebuild exon 2675050 2675142 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2675224 2675358 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2675438 2675496 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2675572 2675710 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2675767 2675907 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2675982 2676261 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2676461 2677167 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2677239 2677443 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2677550 2677676 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2677760 2677865 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2677937 2678096 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild exon 2678174 2678322 . - . gene_id "RvY_00967"; transcript_id "RvY_00967.1"; Scaffold001 rebuild transcript 2678991 2683214 . + . gene_id "RvY_00968"; transcript_id "RvY_00968.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2678991 2679548 . + . gene_id "RvY_00968"; transcript_id "RvY_00968.1"; Scaffold001 rebuild exon 2680184 2680858 . + . gene_id "RvY_00968"; transcript_id "RvY_00968.1"; Scaffold001 rebuild exon 2680962 2683214 . + . gene_id "RvY_00968"; transcript_id "RvY_00968.1"; Scaffold001 rebuild transcript 2683392 2684306 . - . gene_id "RvY_00969"; transcript_id "RvY_00969.1"; annotation "hypothetical protein."; Pfam "[Folate_rec] Folate receptor family"; KO "K13649"; Scaffold001 rebuild exon 2683392 2683597 . - . gene_id "RvY_00969"; transcript_id "RvY_00969.1"; Scaffold001 rebuild exon 2683665 2683835 . - . gene_id "RvY_00969"; transcript_id "RvY_00969.1"; Scaffold001 rebuild exon 2683929 2684097 . - . gene_id "RvY_00969"; transcript_id "RvY_00969.1"; Scaffold001 rebuild exon 2684160 2684306 . - . gene_id "RvY_00969"; transcript_id "RvY_00969.1"; Scaffold001 rebuild transcript 2685822 2689257 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; annotation "hypothetical protein."; Pfam "[Acyl_transf_3] Acyltransferase family"; Scaffold001 rebuild exon 2685822 2686112 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2686378 2686687 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2686759 2686872 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2686936 2687015 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2687094 2687198 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2687257 2687332 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2687427 2687613 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2687680 2688513 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild exon 2688927 2689257 . - . gene_id "RvY_00970"; transcript_id "RvY_00970.1"; Scaffold001 rebuild transcript 2689935 2693506 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; annotation "hypothetical protein."; Pfam "[Acyl_transf_3] Acyltransferase family"; Scaffold001 rebuild exon 2689935 2690102 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2690462 2690858 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2690983 2691141 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2691223 2691279 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2691341 2691544 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2691612 2691735 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2691799 2691861 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2691947 2691986 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2692051 2692157 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2692230 2692536 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2692606 2692862 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2692924 2693113 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild exon 2693405 2693506 . - . gene_id "RvY_00971"; transcript_id "RvY_00971.1"; Scaffold001 rebuild transcript 2690462 2690893 . + . gene_id "RvY_00972"; transcript_id "RvY_00972.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2690462 2690893 . + . gene_id "RvY_00972"; transcript_id "RvY_00972.1"; Scaffold001 rebuild transcript 2696086 2698772 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; gene_name "AQP10"; annotation "aquaporin-10"; Pfam "[MIP] Major intrinsic protein"; CDD "Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms."; KO "K09878"; similar_genes "AQP10_HUMAN(e-value:8.5e-21;bit-score:98.0)"; Scaffold001 rebuild exon 2696086 2696350 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2696484 2696641 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2696710 2696741 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2696820 2696847 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2696932 2697032 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2697137 2697298 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2697938 2698029 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2698107 2698147 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild exon 2698644 2698772 . - . gene_id "RvY_00973"; transcript_id "RvY_00973.1"; Scaffold001 rebuild transcript 2699160 2699707 . - . gene_id "RvY_00974"; transcript_id "RvY_00974.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2699160 2699266 . - . gene_id "RvY_00974"; transcript_id "RvY_00974.1"; Scaffold001 rebuild exon 2699680 2699707 . - . gene_id "RvY_00974"; transcript_id "RvY_00974.1"; Scaffold001 rebuild transcript 2704812 2706785 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; gene_name "(1)AQP10(2)MIP"; annotation "(1)aquaporin-10(2)hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "(1)Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.(2)MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes."; KO "(1)K09878"; similar_genes "(1)AQP10_HUMAN(e-value:4.7e-15;bit-score:79.0)(2)AQP9_HUMAN(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 2704812 2704880 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2704964 2705105 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2705233 2705278 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2705376 2705443 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2705522 2705545 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2705749 2705805 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2705894 2705964 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2706031 2706080 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2706151 2706271 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2706361 2706395 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2706470 2706699 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild exon 2706772 2706785 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.1"; Scaffold001 rebuild transcript 2704120 2705448 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.2"; gene_name "(1)AQP10(2)MIP"; annotation "(1)aquaporin-10(2)hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "(1)Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.(2)MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes."; KO "(1)K09878"; similar_genes "(1)AQP10_HUMAN(e-value:4.7e-15;bit-score:79.0)(2)AQP9_HUMAN(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 2704120 2704204 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.2"; Scaffold001 rebuild exon 2704720 2704880 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.2"; Scaffold001 rebuild exon 2704964 2705105 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.2"; Scaffold001 rebuild exon 2705233 2705278 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.2"; Scaffold001 rebuild exon 2705376 2705448 . + . gene_id "RvY_00975"; transcript_id "RvY_00975.2"; Scaffold001 rebuild transcript 2709539 2714065 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; gene_name "SNRK"; annotation "putative SNF-related serine/threonine-protein kinase"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08802"; similar_genes "SNRK_RAT(e-value:2.3e-29;bit-score:127.0)"; Scaffold001 rebuild exon 2709539 2709639 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild exon 2709705 2710127 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild exon 2710422 2710993 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild exon 2711259 2711537 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild exon 2711612 2711753 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild exon 2713051 2713376 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild exon 2713695 2714065 . - . gene_id "RvY_00976"; transcript_id "RvY_00976.1"; Scaffold001 rebuild transcript 2715356 2716201 . - . gene_id "RvY_00977"; transcript_id "RvY_00977.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2715356 2715460 . - . gene_id "RvY_00977"; transcript_id "RvY_00977.1"; Scaffold001 rebuild exon 2715538 2715590 . - . gene_id "RvY_00977"; transcript_id "RvY_00977.1"; Scaffold001 rebuild exon 2715669 2715729 . - . gene_id "RvY_00977"; transcript_id "RvY_00977.1"; Scaffold001 rebuild exon 2715812 2716201 . - . gene_id "RvY_00977"; transcript_id "RvY_00977.1"; Scaffold001 rebuild transcript 2717435 2720458 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; gene_name "DDX6"; annotation "Putative ATP-dependent RNA helicase me31b"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K12614"; similar_genes "DDX6_DROME(e-value:4.7e-170;bit-score:594.0)"; Scaffold001 rebuild exon 2717435 2717602 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2717784 2718205 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2718361 2718416 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2718505 2718615 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2718694 2718836 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2718919 2719041 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2719218 2719312 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2719381 2719502 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2719613 2719634 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2719703 2719856 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2719923 2720009 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2720074 2720296 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild exon 2720358 2720458 . - . gene_id "RvY_00978"; transcript_id "RvY_00978.1"; Scaffold001 rebuild transcript 2721426 2722948 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; gene_name "PRDX"; annotation "Peroxiredoxin-4"; Pfam "[AhpC-TSA] AhpC/TSA family|[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold001 rebuild exon 2721426 2721555 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2721663 2721710 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2721830 2721887 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2722000 2722069 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2722141 2722250 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2722328 2722400 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2722476 2722663 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild exon 2722783 2722948 . + . gene_id "RvY_00979"; transcript_id "RvY_00979.1"; Scaffold001 rebuild transcript 2725906 2726602 . - . gene_id "RvY_00980"; transcript_id "RvY_00980.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2725906 2726000 . - . gene_id "RvY_00980"; transcript_id "RvY_00980.1"; Scaffold001 rebuild exon 2726491 2726602 . - . gene_id "RvY_00980"; transcript_id "RvY_00980.1"; Scaffold001 rebuild transcript 2727241 2729863 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; gene_name "PPP2R5"; annotation "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform"; Pfam "[B56] Protein phosphatase 2A regulatory B subunit (B56 family)"; KO "K11584"; similar_genes "2A5E_HUMAN(e-value:2.3e-182;bit-score:635.0)"; Scaffold001 rebuild exon 2727241 2727412 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2727479 2727708 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2727843 2728067 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2728172 2728280 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2728665 2728855 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2728944 2729036 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2729101 2729287 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2729353 2729464 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild exon 2729563 2729863 . - . gene_id "RvY_00981"; transcript_id "RvY_00981.1"; Scaffold001 rebuild transcript 2730720 2731230 . - . gene_id "RvY_00982"; transcript_id "RvY_00982.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2730720 2730830 . - . gene_id "RvY_00982"; transcript_id "RvY_00982.1"; Scaffold001 rebuild exon 2731153 2731230 . - . gene_id "RvY_00982"; transcript_id "RvY_00982.1"; Scaffold001 rebuild transcript 2734645 2734881 . - . gene_id "RvY_00983"; transcript_id "RvY_00983.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2734645 2734881 . - . gene_id "RvY_00983"; transcript_id "RvY_00983.1"; Scaffold001 rebuild transcript 2736987 2739891 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; gene_name "MEF2C"; annotation "putative Myocyte-specific enhancer factor 2C"; Pfam "[SRF-TF] SRF-type transcription factor (DNA-binding and dimerisation domain)"; CDD "MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi."; KO "K04454"; similar_genes "MEF2C_PIG(e-value:6.8e-44;bit-score:175.0)"; Scaffold001 rebuild exon 2736987 2737040 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild exon 2737340 2737543 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild exon 2738111 2738580 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild exon 2738949 2739259 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild exon 2739326 2739446 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild exon 2739552 2739673 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild exon 2739770 2739891 . + . gene_id "RvY_00984"; transcript_id "RvY_00984.1"; Scaffold001 rebuild transcript 2740380 2741732 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; gene_name "COX10"; annotation "putative Protoheme IX farnesyltransferase, mitochondrial"; Pfam "[UbiA] UbiA prenyltransferase family"; CDD "protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor."; EC "EC2.5.1.-"; KO "K02257"; similar_genes "COX10_HUMAN(e-value:4.4e-41;bit-score:166.0)"; Scaffold001 rebuild exon 2740380 2740717 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; Scaffold001 rebuild exon 2740818 2740940 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; Scaffold001 rebuild exon 2740997 2741226 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; Scaffold001 rebuild exon 2741324 2741394 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; Scaffold001 rebuild exon 2741464 2741588 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; Scaffold001 rebuild exon 2741663 2741732 . - . gene_id "RvY_00985"; transcript_id "RvY_00985.1"; Scaffold001 rebuild transcript 2742261 2742587 . + . gene_id "RvY_00986"; transcript_id "RvY_00986.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2742261 2742587 . + . gene_id "RvY_00986"; transcript_id "RvY_00986.1"; Scaffold001 rebuild transcript 2744944 2748813 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; gene_name "RRM"; annotation "putative Fox-1 homolog C"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 2744944 2745108 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2746458 2746751 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2746814 2746867 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2747075 2747167 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2747866 2747938 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2748015 2748193 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2748473 2748615 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild exon 2748696 2748813 . + . gene_id "RvY_00987"; transcript_id "RvY_00987.1"; Scaffold001 rebuild transcript 2750533 2750859 . - . gene_id "RvY_00988"; transcript_id "RvY_00988.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2750533 2750859 . - . gene_id "RvY_00988"; transcript_id "RvY_00988.1"; Scaffold001 rebuild transcript 2752796 2755372 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2752796 2752921 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2752997 2753069 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2753144 2753268 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2753372 2753564 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2753697 2753851 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2753924 2754250 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2754367 2754687 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2754753 2754950 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2755041 2755117 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild exon 2755198 2755372 . + . gene_id "RvY_00989"; transcript_id "RvY_00989.1"; Scaffold001 rebuild transcript 2755400 2756806 . + . gene_id "RvY_00990"; transcript_id "RvY_00990.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2755400 2755628 . + . gene_id "RvY_00990"; transcript_id "RvY_00990.1"; Scaffold001 rebuild exon 2755693 2755898 . + . gene_id "RvY_00990"; transcript_id "RvY_00990.1"; Scaffold001 rebuild exon 2755986 2756189 . + . gene_id "RvY_00990"; transcript_id "RvY_00990.1"; Scaffold001 rebuild exon 2756277 2756396 . + . gene_id "RvY_00990"; transcript_id "RvY_00990.1"; Scaffold001 rebuild exon 2756459 2756806 . + . gene_id "RvY_00990"; transcript_id "RvY_00990.1"; Scaffold001 rebuild transcript 2766529 2768819 . + . gene_id "RvY_00991"; transcript_id "RvY_00991.1"; annotation "putative Dynein heavy chain 8, axonemal"; Pfam "[MT] Microtubule-binding stalk of dynein motor"; similar_genes "DYH8_HUMAN(e-value:6.1e-30;bit-score:129.0)"; Scaffold001 rebuild exon 2766529 2766747 . + . gene_id "RvY_00991"; transcript_id "RvY_00991.1"; Scaffold001 rebuild exon 2768039 2768520 . + . gene_id "RvY_00991"; transcript_id "RvY_00991.1"; Scaffold001 rebuild exon 2768588 2768819 . + . gene_id "RvY_00991"; transcript_id "RvY_00991.1"; Scaffold001 rebuild transcript 2768877 2772765 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; annotation "Dynein heavy chain 8, axonemal"; Pfam "[Dynein_heavy] Dynein heavy chain and region D6 of dynein motor|[AAA_9] ATP-binding dynein motor region D5"; similar_genes "DYH8_MOUSE(e-value:1.4e-133;bit-score:473.0)"; Scaffold001 rebuild exon 2768877 2769131 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2769356 2769897 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2769962 2770152 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2770229 2770353 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2770419 2770814 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2770872 2771024 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2771149 2771994 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2772097 2772408 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild exon 2772469 2772765 . + . gene_id "RvY_00992"; transcript_id "RvY_00992.1"; Scaffold001 rebuild transcript 2773043 2774301 . - . gene_id "RvY_00993"; transcript_id "RvY_00993.1"; gene_name "ddlA"; annotation "D-alanine-D-alanine ligase [EC:6.3.2.4]"; Pfam "[Dala_Dala_lig_C] D-ala D-ala ligase C-terminus|[ATP-grasp_4] ATP-grasp domain"; CDD "D-alanine--D-alanine ligase; Reviewed"; EC "EC6.3.2.4"; KO "K01921"; Scaffold001 rebuild exon 2773043 2773147 . - . gene_id "RvY_00993"; transcript_id "RvY_00993.1"; Scaffold001 rebuild exon 2773222 2774152 . - . gene_id "RvY_00993"; transcript_id "RvY_00993.1"; Scaffold001 rebuild exon 2774213 2774301 . - . gene_id "RvY_00993"; transcript_id "RvY_00993.1"; Scaffold001 rebuild transcript 2775386 2790693 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; gene_name "EGFR"; annotation "putative Tyrosine-protein kinase transforming protein erbB"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Recep_L_domain] Receptor L domain|[Furin-like] Furin-like cysteine rich region"; CDD "Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy."; EC "EC2.7.10.1"; KO "K04361"; similar_genes "ERBB_AVIEU(e-value:1.2e-47;bit-score:187.0)"; Scaffold001 rebuild exon 2775386 2775548 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2784726 2785268 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2785616 2785996 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2786057 2786784 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2786874 2787110 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2787409 2787854 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2788080 2788356 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2788547 2788837 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2788902 2789057 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2789199 2789672 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2789742 2789919 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2790023 2790151 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2790235 2790466 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild exon 2790591 2790693 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.1"; Scaffold001 rebuild transcript 2783646 2790605 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; gene_name "EGFR"; annotation "putative Tyrosine-protein kinase transforming protein erbB"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Recep_L_domain] Receptor L domain|[Furin-like] Furin-like cysteine rich region"; CDD "Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy."; EC "EC2.7.10.1"; KO "K04361"; similar_genes "ERBB_AVIEU(e-value:1.2e-47;bit-score:187.0)"; Scaffold001 rebuild exon 2783646 2783835 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2784726 2785268 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2785616 2785996 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2786057 2786784 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2786874 2787110 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2787409 2787854 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2788080 2788356 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2788547 2788837 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2788902 2789057 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2789199 2789672 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2789742 2789919 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2790023 2790151 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2790235 2790392 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild exon 2790591 2790605 . + . gene_id "RvY_00994"; transcript_id "RvY_00994.2"; Scaffold001 rebuild transcript 2780979 2781180 . - . gene_id "RvY_00995"; transcript_id "RvY_00995.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2780979 2781180 . - . gene_id "RvY_00995"; transcript_id "RvY_00995.1"; Scaffold001 rebuild transcript 2792756 2794576 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; gene_name "K00993"; annotation "putative Choline/ethanolaminephosphotransferase 1"; Pfam "[CDP-OH_P_transf] CDP-alcohol phosphatidyltransferase"; CDD "sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]"; EC "EC2.7.8.1"; KO "K00993"; similar_genes "CEPT1_XENTR(e-value:1.2e-43;bit-score:174.0)"; Scaffold001 rebuild exon 2792756 2793010 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2793083 2793214 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2793305 2793457 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2793530 2793661 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2793731 2793815 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2793909 2794050 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2794118 2794265 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild exon 2794343 2794576 . - . gene_id "RvY_00996"; transcript_id "RvY_00996.1"; Scaffold001 rebuild transcript 2795326 2797326 . - . gene_id "RvY_00997"; transcript_id "RvY_00997.1"; gene_name "CDC45"; annotation "cell division control protein 45"; Pfam "[CDC45] CDC45-like protein"; KO "K06628"; Scaffold001 rebuild exon 2795326 2795949 . - . gene_id "RvY_00997"; transcript_id "RvY_00997.1"; Scaffold001 rebuild exon 2796026 2796412 . - . gene_id "RvY_00997"; transcript_id "RvY_00997.1"; Scaffold001 rebuild exon 2796547 2797326 . - . gene_id "RvY_00997"; transcript_id "RvY_00997.1"; Scaffold001 rebuild transcript 2798062 2802986 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; annotation "hypothetical protein."; Pfam "[Integrin_alpha2] Integrin alpha|[FG-GAP_2] FG-GAP repeat|[VCBS] Family description|[FG-GAP] FG-GAP repeat"; similar_genes "ITA7_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold001 rebuild exon 2798062 2798406 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2798481 2798600 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2798680 2798880 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2798952 2799011 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2799073 2799192 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2799285 2800346 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2800530 2801047 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2801259 2801546 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2801944 2802406 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild exon 2802825 2802986 . - . gene_id "RvY_00998"; transcript_id "RvY_00998.1"; Scaffold001 rebuild transcript 2804232 2804468 . + . gene_id "RvY_00999"; transcript_id "RvY_00999.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2804232 2804468 . + . gene_id "RvY_00999"; transcript_id "RvY_00999.1"; Scaffold001 rebuild transcript 2806290 2807291 . - . gene_id "RvY_01000"; transcript_id "RvY_01000.1"; gene_name "BHLHB8"; annotation "class B basic helix-loop-helix protein 8"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K08040"; similar_genes "BHA15_RAT(e-value:2.7e-13;bit-score:73.0)"; Scaffold001 rebuild exon 2806290 2806445 . - . gene_id "RvY_01000"; transcript_id "RvY_01000.1"; Scaffold001 rebuild exon 2806644 2807291 . - . gene_id "RvY_01000"; transcript_id "RvY_01000.1"; Scaffold001 rebuild transcript 2810384 2811242 . - . gene_id "RvY_01001"; transcript_id "RvY_01001.1"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; Scaffold001 rebuild exon 2810384 2810583 . - . gene_id "RvY_01001"; transcript_id "RvY_01001.1"; Scaffold001 rebuild exon 2810853 2811141 . - . gene_id "RvY_01001"; transcript_id "RvY_01001.1"; Scaffold001 rebuild exon 2811219 2811242 . - . gene_id "RvY_01001"; transcript_id "RvY_01001.1"; Scaffold001 rebuild transcript 2812405 2817010 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2812405 2812887 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2813034 2813213 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2813302 2813406 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2813463 2813639 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2813709 2813783 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2813946 2814092 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2814173 2814718 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2814811 2814897 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2815028 2815174 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2815401 2815829 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2816029 2816217 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2816354 2816777 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild exon 2816886 2817010 . + . gene_id "RvY_01002"; transcript_id "RvY_01002.1"; Scaffold001 rebuild transcript 2817492 2819041 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2817492 2817685 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild exon 2817795 2818061 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild exon 2818115 2818337 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild exon 2818403 2818499 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild exon 2818558 2818608 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild exon 2818679 2818928 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild exon 2819035 2819041 . - . gene_id "RvY_01003"; transcript_id "RvY_01003.1"; Scaffold001 rebuild transcript 2819614 2825543 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[CLASP_N] CLASP N terminal"; similar_genes "CLAP2_MOUSE(e-value:2.0e-11;bit-score:67.0)"; Scaffold001 rebuild exon 2819614 2819641 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2819877 2819911 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2819970 2820054 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2820149 2820306 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2820364 2820509 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2820586 2820721 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2820838 2820911 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2820986 2821123 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2821189 2821380 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2821681 2821715 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2821830 2822030 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2822107 2822390 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2822469 2822584 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2822668 2822895 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2823144 2823456 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2823519 2823664 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2823946 2824290 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2824357 2824606 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2824710 2824916 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2825051 2825173 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2825340 2825389 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild exon 2825468 2825543 . + . gene_id "RvY_01004"; transcript_id "RvY_01004.1"; Scaffold001 rebuild transcript 2827683 2838452 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[CLASP_N] CLASP N terminal"; similar_genes "CLAP2_HUMAN(e-value:7.3e-18;bit-score:88.0)"; Scaffold001 rebuild exon 2827683 2827833 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2832661 2832770 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2833067 2833202 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2833600 2833757 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2833881 2834026 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2834130 2834265 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2834398 2834471 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2834602 2834739 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2835183 2835397 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2835462 2835644 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2835757 2836007 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2836077 2836180 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2836272 2836578 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2836943 2837568 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2837657 2838104 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2838233 2838355 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild exon 2838417 2838452 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.1"; Scaffold001 rebuild transcript 2830185 2838452 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[CLASP_N] CLASP N terminal"; similar_genes "CLAP2_HUMAN(e-value:7.3e-18;bit-score:88.0)"; Scaffold001 rebuild exon 2830185 2830194 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2832661 2832770 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2833067 2833202 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2833600 2833757 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2833881 2834026 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2834130 2834265 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2834398 2834471 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2834602 2834739 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2835183 2835397 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2835462 2835644 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2835757 2836007 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2836077 2836180 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2836272 2836578 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2836943 2837568 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2837657 2838104 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2838233 2838355 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild exon 2838417 2838452 . + . gene_id "RvY_01005"; transcript_id "RvY_01005.2"; Scaffold001 rebuild transcript 2840653 2842743 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.1"; gene_name "(1)CYCc"; annotation "(1)hypothetical protein.(2)Atrial natriuretic peptide receptor 2"; Pfam "[NIT] Nitrate and nitrite sensing|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRB_ANGJA(e-value:4.1e-14;bit-score:76.0)(2)ANPRB_RAT(e-value:2.8e-70;bit-score:263.0)"; Scaffold001 rebuild exon 2840653 2841365 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.1"; Scaffold001 rebuild exon 2841551 2841873 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.1"; Scaffold001 rebuild exon 2842232 2842743 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.1"; Scaffold001 rebuild transcript 2839471 2841758 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; gene_name "(1)CYCc"; annotation "(1)hypothetical protein.(2)Atrial natriuretic peptide receptor 2"; Pfam "[NIT] Nitrate and nitrite sensing|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRB_ANGJA(e-value:4.1e-14;bit-score:76.0)(2)ANPRB_RAT(e-value:2.8e-70;bit-score:263.0)"; Scaffold001 rebuild exon 2839471 2839572 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2839653 2839788 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2839998 2840034 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2840109 2840233 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2840346 2840394 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2840471 2840521 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2840709 2841365 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild exon 2841551 2841758 . - . gene_id "RvY_01006"; transcript_id "RvY_01006.2"; Scaffold001 rebuild transcript 2842785 2843203 . - . gene_id "RvY_01007"; transcript_id "RvY_01007.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2842785 2843011 . - . gene_id "RvY_01007"; transcript_id "RvY_01007.1"; Scaffold001 rebuild exon 2843200 2843203 . - . gene_id "RvY_01007"; transcript_id "RvY_01007.1"; Scaffold001 rebuild transcript 2843110 2843310 . - . gene_id "RvY_01007"; transcript_id "RvY_01007.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2843110 2843310 . - . gene_id "RvY_01007"; transcript_id "RvY_01007.2"; Scaffold001 rebuild transcript 2843641 2844039 . + . gene_id "RvY_01008"; transcript_id "RvY_01008.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2843641 2844039 . + . gene_id "RvY_01008"; transcript_id "RvY_01008.1"; Scaffold001 rebuild transcript 2843469 2843792 . + . gene_id "RvY_01008"; transcript_id "RvY_01008.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2843469 2843792 . + . gene_id "RvY_01008"; transcript_id "RvY_01008.2"; Scaffold001 rebuild transcript 2845069 2846375 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; annotation "hypothetical protein."; Pfam "[CUB]|[CRF-BP] Corticotropin-releasing factor binding protein (CRF-BP)"; Scaffold001 rebuild exon 2845069 2845158 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; Scaffold001 rebuild exon 2845223 2845307 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; Scaffold001 rebuild exon 2845393 2845767 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; Scaffold001 rebuild exon 2845851 2845999 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; Scaffold001 rebuild exon 2846060 2846165 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; Scaffold001 rebuild exon 2846233 2846375 . + . gene_id "RvY_01009"; transcript_id "RvY_01009.1"; Scaffold001 rebuild transcript 2846899 2848309 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.1"; gene_name "(3)K06998"; annotation "(1,2)hypothetical protein.(3)Unclassified; Poorly Characterized; General function prediction only"; Pfam "[PhzC-PhzF] Phenazine biosynthesis-like protein"; EC "EC5.1.-.-"; KO "(3)K06998"; similar_genes "PBLD_HUMAN(e-value:1.4e-14;bit-score:78.0)"; Scaffold001 rebuild exon 2846899 2847133 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.1"; Scaffold001 rebuild exon 2847220 2847318 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.1"; Scaffold001 rebuild exon 2847510 2847961 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.1"; Scaffold001 rebuild exon 2848025 2848309 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.1"; Scaffold001 rebuild transcript 2846899 2848260 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.2"; gene_name "(3)K06998"; annotation "(1,2)hypothetical protein.(3)Unclassified; Poorly Characterized; General function prediction only"; Pfam "[PhzC-PhzF] Phenazine biosynthesis-like protein"; EC "EC5.1.-.-"; KO "(3)K06998"; similar_genes "PBLD_HUMAN(e-value:1.4e-14;bit-score:78.0)"; Scaffold001 rebuild exon 2846899 2847133 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.2"; Scaffold001 rebuild exon 2847220 2847318 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.2"; Scaffold001 rebuild exon 2847510 2847961 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.2"; Scaffold001 rebuild exon 2848025 2848082 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.2"; Scaffold001 rebuild exon 2848148 2848260 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.2"; Scaffold001 rebuild transcript 2846862 2848260 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; gene_name "(3)K06998"; annotation "(1,2)hypothetical protein.(3)Unclassified; Poorly Characterized; General function prediction only"; Pfam "[PhzC-PhzF] Phenazine biosynthesis-like protein"; EC "EC5.1.-.-"; KO "(3)K06998"; similar_genes "PBLD_HUMAN(e-value:1.4e-14;bit-score:78.0)"; Scaffold001 rebuild exon 2846862 2846963 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; Scaffold001 rebuild exon 2847034 2847133 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; Scaffold001 rebuild exon 2847220 2847318 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; Scaffold001 rebuild exon 2847510 2847961 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; Scaffold001 rebuild exon 2848025 2848082 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; Scaffold001 rebuild exon 2848148 2848260 . + . gene_id "RvY_01010"; transcript_id "RvY_01010.3"; Scaffold001 rebuild transcript 2846920 2847278 . - . gene_id "RvY_01011"; transcript_id "RvY_01011.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2846920 2847046 . - . gene_id "RvY_01011"; transcript_id "RvY_01011.1"; Scaffold001 rebuild exon 2847211 2847278 . - . gene_id "RvY_01011"; transcript_id "RvY_01011.1"; Scaffold001 rebuild transcript 2848839 2851389 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; gene_name "clpX"; annotation "ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial"; Pfam "[Sigma54_activat] Sigma-54 interaction domain|[AAA] ATPase family associated with various cellular activities (AAA)|[ClpB_D2-small] C-terminal, D2-small domain, of ClpB protein|[AAA_2] AAA domain (Cdc48 subfamily)|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "ATP-dependent protease ATP-binding subunit ClpX; Provisional"; KO "K03544"; similar_genes "CLPX_HUMAN(e-value:5.5e-69;bit-score:258.0)"; Scaffold001 rebuild exon 2848839 2849214 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild exon 2849308 2849444 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild exon 2849510 2849702 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild exon 2849773 2850218 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild exon 2850483 2850650 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild exon 2850735 2851037 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild exon 2851111 2851389 . + . gene_id "RvY_01012"; transcript_id "RvY_01012.1"; Scaffold001 rebuild transcript 2852232 2854113 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; annotation "hypothetical protein."; Pfam "[RUN]"; Scaffold001 rebuild exon 2852232 2852302 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2852363 2852484 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2852625 2852758 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2852830 2853011 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2853108 2853152 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2853214 2853249 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2853343 2853502 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2853587 2853744 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild exon 2853813 2854113 . + . gene_id "RvY_01013"; transcript_id "RvY_01013.1"; Scaffold001 rebuild transcript 2854721 2857325 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; gene_name "WDTC1"; annotation "putative WD and tetratricopeptide repeats protein 1"; Pfam "[TPR_1] Tetratricopeptide repeat|[WD40] WD domain, G-beta repeat|[TPR_11] TPR repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11807"; similar_genes "WDTC1_MOUSE(e-value:2.3e-29;bit-score:127.0)"; Scaffold001 rebuild exon 2854721 2854980 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2855049 2855135 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2855200 2855501 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2855599 2855758 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2855823 2855938 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2856004 2856584 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2856722 2856920 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild exon 2856988 2857325 . - . gene_id "RvY_01014"; transcript_id "RvY_01014.1"; Scaffold001 rebuild transcript 2857904 2861561 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; gene_name "GAA"; annotation "putative Sucrase-isomaltase, intestinal"; Pfam "[Trefoil] Trefoil (P-type) domain|[Glyco_hydro_31] Glycosyl hydrolases family 31|[Gal_mutarotas_2] Galactose mutarotase-like"; CDD "This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of the tandem GH31 domains of MGAM and SI are included in this family. The domain architecture of GAA includes an N-terminal TFF (trefoil factor family) domain in addition to the GH31 catalytic domain. Deficient GAA expression causes pompe disease, an autosomal recessive genetic disorder also known as glycogen storage disease type II (GSDII)."; EC "EC3.2.1.20|EC3.2.1.48"; KO "K12316"; similar_genes "SUIS_SUNMU(e-value:6.0e-45;bit-score:178.0)"; Scaffold001 rebuild exon 2857904 2858339 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; Scaffold001 rebuild exon 2858402 2858846 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; Scaffold001 rebuild exon 2858979 2859357 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; Scaffold001 rebuild exon 2859415 2859771 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; Scaffold001 rebuild exon 2860017 2860780 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; Scaffold001 rebuild exon 2861066 2861561 . + . gene_id "RvY_01015"; transcript_id "RvY_01015.1"; Scaffold001 rebuild transcript 2861989 2862219 . - . gene_id "RvY_01016"; transcript_id "RvY_01016.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2861989 2862219 . - . gene_id "RvY_01016"; transcript_id "RvY_01016.1"; Scaffold001 rebuild transcript 2863480 2866993 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; annotation "hypothetical protein."; Pfam "[Zip] ZIP Zinc transporter"; KO "K14718"; similar_genes "S39AC_HUMAN(e-value:1.9e-16;bit-score:84.0)"; Scaffold001 rebuild exon 2863480 2863773 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2863862 2864179 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2864247 2864361 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2865044 2865178 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2865241 2865444 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2865508 2865609 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2865678 2865847 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2865913 2866306 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2866374 2866526 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2866619 2866806 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild exon 2866871 2866993 . + . gene_id "RvY_01017"; transcript_id "RvY_01017.1"; Scaffold001 rebuild transcript 2867444 2868560 . - . gene_id "RvY_01018"; transcript_id "RvY_01018.1"; gene_name "metazoan_ACD"; annotation "hypothetical protein."; Pfam "[HSP20] Hsp20/alpha crystallin family"; CDD "Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally Scaffold001 rebuild exon 2867444 2867595 . - . gene_id "RvY_01018"; transcript_id "RvY_01018.1"; Scaffold001 rebuild exon 2867923 2867971 . - . gene_id "RvY_01018"; transcript_id "RvY_01018.1"; Scaffold001 rebuild exon 2868039 2868094 . - . gene_id "RvY_01018"; transcript_id "RvY_01018.1"; Scaffold001 rebuild exon 2868171 2868357 . - . gene_id "RvY_01018"; transcript_id "RvY_01018.1"; Scaffold001 rebuild exon 2868426 2868560 . - . gene_id "RvY_01018"; transcript_id "RvY_01018.1"; Scaffold001 rebuild transcript 2870375 2870665 . + . gene_id "RvY_01019"; transcript_id "RvY_01019.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2870375 2870665 . + . gene_id "RvY_01019"; transcript_id "RvY_01019.1"; Scaffold001 rebuild transcript 2872365 2872592 . + . gene_id "RvY_01020"; transcript_id "RvY_01020.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2872365 2872592 . + . gene_id "RvY_01020"; transcript_id "RvY_01020.1"; Scaffold001 rebuild transcript 2872644 2874098 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.1"; gene_name "(1,2,4)RT_nLTR_like"; annotation "hypothetical protein."; CDD "(1,2,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 2872644 2874098 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.1"; Scaffold001 rebuild transcript 2872644 2874303 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.2"; gene_name "(1,2,4)RT_nLTR_like"; annotation "hypothetical protein."; CDD "(1,2,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 2872644 2874086 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.2"; Scaffold001 rebuild exon 2874295 2874303 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.2"; Scaffold001 rebuild transcript 2872644 2874189 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.3"; gene_name "(1,2,4)RT_nLTR_like"; annotation "hypothetical protein."; CDD "(1,2,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 2872644 2873814 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.3"; Scaffold001 rebuild exon 2874053 2874189 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.3"; Scaffold001 rebuild transcript 2873079 2874098 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.4"; gene_name "(1,2,4)RT_nLTR_like"; annotation "hypothetical protein."; CDD "(1,2,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 2873079 2874098 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.4"; Scaffold001 rebuild transcript 2873079 2874400 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.5"; gene_name "(1,2,4)RT_nLTR_like"; annotation "hypothetical protein."; CDD "(1,2,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 2873079 2873814 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.5"; Scaffold001 rebuild exon 2874053 2874086 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.5"; Scaffold001 rebuild exon 2874295 2874400 . + . gene_id "RvY_01021"; transcript_id "RvY_01021.5"; Scaffold001 rebuild transcript 2874640 2875302 . + . gene_id "RvY_01022"; transcript_id "RvY_01022.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2874640 2875302 . + . gene_id "RvY_01022"; transcript_id "RvY_01022.1"; Scaffold001 rebuild transcript 2877295 2883453 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; gene_name "(3)tolA"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(3)cell envelope integrity inner membrane protein TolA; Provisional"; EC "(1,3)EC2.7.11.-"; similar_genes "(1,3)AK1_DICDI(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 2877295 2877446 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2877539 2877632 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2877880 2880173 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2880246 2880375 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2880436 2880496 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2880568 2880606 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2880677 2880777 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2880929 2881043 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2881125 2881201 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2881511 2881665 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2881725 2881845 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2881935 2882066 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2882231 2882333 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2882543 2883006 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2883079 2883227 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild exon 2883417 2883453 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.1"; Scaffold001 rebuild transcript 2875884 2879109 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; gene_name "(3)tolA"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(3)cell envelope integrity inner membrane protein TolA; Provisional"; EC "(1,3)EC2.7.11.-"; similar_genes "(1,3)AK1_DICDI(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 2875884 2876129 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2876205 2876300 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2876361 2876555 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2876633 2876869 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2876928 2876984 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2877071 2877226 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2877313 2877446 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2877539 2877632 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild exon 2877880 2879109 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.2"; Scaffold001 rebuild transcript 2877871 2880354 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.3"; gene_name "(3)tolA"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(3)cell envelope integrity inner membrane protein TolA; Provisional"; EC "(1,3)EC2.7.11.-"; similar_genes "(1,3)AK1_DICDI(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 2877871 2880173 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.3"; Scaffold001 rebuild exon 2880246 2880354 . - . gene_id "RvY_01023"; transcript_id "RvY_01023.3"; Scaffold001 rebuild transcript 2878324 2879304 . + . gene_id "RvY_01024"; transcript_id "RvY_01024.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2878324 2878670 . + . gene_id "RvY_01024"; transcript_id "RvY_01024.1"; Scaffold001 rebuild exon 2878824 2879091 . + . gene_id "RvY_01024"; transcript_id "RvY_01024.1"; Scaffold001 rebuild exon 2879167 2879304 . + . gene_id "RvY_01024"; transcript_id "RvY_01024.1"; Scaffold001 rebuild transcript 2884998 2887396 . - . gene_id "RvY_01025"; transcript_id "RvY_01025.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2884998 2885631 . - . gene_id "RvY_01025"; transcript_id "RvY_01025.1"; Scaffold001 rebuild exon 2885774 2885943 . - . gene_id "RvY_01025"; transcript_id "RvY_01025.1"; Scaffold001 rebuild exon 2886019 2886077 . - . gene_id "RvY_01025"; transcript_id "RvY_01025.1"; Scaffold001 rebuild exon 2886292 2887396 . - . gene_id "RvY_01025"; transcript_id "RvY_01025.1"; Scaffold001 rebuild transcript 2894552 2894992 . - . gene_id "RvY_01026"; transcript_id "RvY_01026.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2894552 2894992 . - . gene_id "RvY_01026"; transcript_id "RvY_01026.1"; Scaffold001 rebuild transcript 2895144 2896065 . - . gene_id "RvY_01027"; transcript_id "RvY_01027.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_1_like] MFS_1 like family"; Scaffold001 rebuild exon 2895144 2895556 . - . gene_id "RvY_01027"; transcript_id "RvY_01027.1"; Scaffold001 rebuild exon 2895634 2895759 . - . gene_id "RvY_01027"; transcript_id "RvY_01027.1"; Scaffold001 rebuild exon 2895840 2896065 . - . gene_id "RvY_01027"; transcript_id "RvY_01027.1"; Scaffold001 rebuild transcript 2896883 2898387 . - . gene_id "RvY_01028"; transcript_id "RvY_01028.1"; gene_name "PRK08853"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold001 rebuild exon 2896883 2897875 . - . gene_id "RvY_01028"; transcript_id "RvY_01028.1"; Scaffold001 rebuild exon 2897978 2898125 . - . gene_id "RvY_01028"; transcript_id "RvY_01028.1"; Scaffold001 rebuild exon 2898230 2898387 . - . gene_id "RvY_01028"; transcript_id "RvY_01028.1"; Scaffold001 rebuild transcript 2899539 2899913 . - . gene_id "RvY_01029"; transcript_id "RvY_01029.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2899539 2899913 . - . gene_id "RvY_01029"; transcript_id "RvY_01029.1"; Scaffold001 rebuild transcript 2901335 2902160 . - . gene_id "RvY_01030"; transcript_id "RvY_01030.1"; annotation "hypothetical protein."; Pfam "[DUF2807]"; Scaffold001 rebuild exon 2901335 2901817 . - . gene_id "RvY_01030"; transcript_id "RvY_01030.1"; Scaffold001 rebuild exon 2901924 2902160 . - . gene_id "RvY_01030"; transcript_id "RvY_01030.1"; Scaffold001 rebuild transcript 2906962 2908731 . + . gene_id "RvY_01031"; transcript_id "RvY_01031.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2906962 2907039 . + . gene_id "RvY_01031"; transcript_id "RvY_01031.1"; Scaffold001 rebuild exon 2907124 2907827 . + . gene_id "RvY_01031"; transcript_id "RvY_01031.1"; Scaffold001 rebuild exon 2907889 2908099 . + . gene_id "RvY_01031"; transcript_id "RvY_01031.1"; Scaffold001 rebuild exon 2908468 2908731 . + . gene_id "RvY_01031"; transcript_id "RvY_01031.1"; Scaffold001 rebuild transcript 2915296 2916856 . + . gene_id "RvY_01032"; transcript_id "RvY_01032.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold001 rebuild exon 2915296 2915723 . + . gene_id "RvY_01032"; transcript_id "RvY_01032.1"; Scaffold001 rebuild exon 2915998 2916856 . + . gene_id "RvY_01032"; transcript_id "RvY_01032.1"; Scaffold001 rebuild transcript 2917301 2919714 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.1"; gene_name "FHA"; annotation "hypothetical protein."; Pfam "[FHA]"; CDD "Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation)."; similar_genes "NADAP_HUMAN(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 2917301 2917350 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.1"; Scaffold001 rebuild exon 2917466 2917556 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.1"; Scaffold001 rebuild exon 2917639 2918396 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.1"; Scaffold001 rebuild exon 2918624 2919206 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.1"; Scaffold001 rebuild exon 2919286 2919714 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.1"; Scaffold001 rebuild transcript 2917594 2919714 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.2"; gene_name "FHA"; annotation "hypothetical protein."; Pfam "[FHA]"; CDD "Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation)."; similar_genes "NADAP_HUMAN(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 2917594 2918396 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.2"; Scaffold001 rebuild exon 2918624 2919206 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.2"; Scaffold001 rebuild exon 2919286 2919714 . - . gene_id "RvY_01033"; transcript_id "RvY_01033.2"; Scaffold001 rebuild transcript 2920247 2920453 . - . gene_id "RvY_01034"; transcript_id "RvY_01034.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2920247 2920453 . - . gene_id "RvY_01034"; transcript_id "RvY_01034.1"; Scaffold001 rebuild transcript 2920847 2921777 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2920847 2920929 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.1"; Scaffold001 rebuild exon 2920999 2921278 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.1"; Scaffold001 rebuild exon 2921335 2921446 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.1"; Scaffold001 rebuild exon 2921528 2921612 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.1"; Scaffold001 rebuild exon 2921678 2921777 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.1"; Scaffold001 rebuild transcript 2920847 2921777 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2920847 2920929 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.2"; Scaffold001 rebuild exon 2920999 2921158 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.2"; Scaffold001 rebuild exon 2921335 2921446 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.2"; Scaffold001 rebuild exon 2921528 2921612 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.2"; Scaffold001 rebuild exon 2921678 2921777 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.2"; Scaffold001 rebuild transcript 2920847 2921527 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2920847 2920929 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.3"; Scaffold001 rebuild exon 2920999 2921278 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.3"; Scaffold001 rebuild exon 2921335 2921427 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.3"; Scaffold001 rebuild exon 2921504 2921527 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.3"; Scaffold001 rebuild transcript 2921349 2921928 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2921349 2921427 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.4"; Scaffold001 rebuild exon 2921504 2921612 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.4"; Scaffold001 rebuild exon 2921678 2921773 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.4"; Scaffold001 rebuild exon 2921865 2921928 . + . gene_id "RvY_01035"; transcript_id "RvY_01035.4"; Scaffold001 rebuild transcript 2922794 2933792 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2922794 2922818 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2922921 2922994 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2923333 2923554 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2923827 2924705 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2924885 2926864 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2927311 2927532 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2927596 2927687 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2927748 2928661 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2928753 2929414 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2929629 2929977 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2930053 2930111 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2930190 2930266 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2930341 2930518 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2930600 2930750 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2930826 2930917 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2930985 2931198 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2931262 2931422 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2931484 2931750 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2931839 2932277 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2932364 2932729 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2932802 2933012 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2933089 2933266 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild exon 2933343 2933792 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.1"; Scaffold001 rebuild transcript 2927152 2933792 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 2927152 2927196 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2927311 2927532 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2927596 2927687 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2927748 2928661 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2928753 2929414 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2929629 2929977 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2930053 2930111 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2930190 2930266 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2930341 2930518 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2930600 2930750 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2930826 2930917 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2930985 2931198 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2931262 2931422 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2931484 2931750 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2931839 2932277 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2932364 2932729 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2932802 2933012 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2933089 2933266 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild exon 2933343 2933792 . + . gene_id "RvY_01036"; transcript_id "RvY_01036.2"; Scaffold001 rebuild transcript 2934161 2938303 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|(1,2)[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold001 rebuild exon 2934161 2934173 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2934237 2934486 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2934570 2934730 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2934799 2935076 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2935152 2935316 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2935415 2935650 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2935731 2936000 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2936142 2936211 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2936277 2936372 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2936427 2936533 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2936604 2936679 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2936757 2936975 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2937032 2937320 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild exon 2938080 2938303 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.1"; Scaffold001 rebuild transcript 2934161 2937418 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|(1,2)[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold001 rebuild exon 2934161 2934173 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2934237 2934486 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2934570 2934730 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2934799 2935076 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2935152 2935316 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2935415 2935650 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2935731 2936000 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2936142 2936211 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2936277 2936372 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2936427 2936533 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2936604 2936679 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2936757 2936975 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild exon 2937032 2937418 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.2"; Scaffold001 rebuild transcript 2934161 2937023 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|(1,2)[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold001 rebuild exon 2934161 2934173 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2934237 2934486 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2934570 2934730 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2934799 2935076 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2935152 2935316 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2935415 2935650 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2935731 2936000 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2936142 2936211 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2936277 2936372 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2936427 2936533 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2936604 2936679 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild exon 2936757 2937023 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.3"; Scaffold001 rebuild transcript 2934161 2936004 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|(1,2)[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold001 rebuild exon 2934161 2934173 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild exon 2934237 2934486 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild exon 2934570 2934730 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild exon 2934799 2935076 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild exon 2935152 2935316 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild exon 2935415 2935650 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild exon 2935731 2936004 . + . gene_id "RvY_01037"; transcript_id "RvY_01037.4"; Scaffold001 rebuild transcript 2938355 2938570 . - . gene_id "RvY_01038"; transcript_id "RvY_01038.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2938355 2938570 . - . gene_id "RvY_01038"; transcript_id "RvY_01038.1"; Scaffold001 rebuild transcript 2939963 2941892 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2939963 2939969 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild exon 2940101 2940318 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild exon 2940620 2940737 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild exon 2940804 2941217 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild exon 2941288 2941481 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild exon 2941555 2941672 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild exon 2941732 2941892 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.1"; Scaffold001 rebuild transcript 2939963 2941892 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2939963 2939969 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2940101 2940318 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2940620 2940737 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2940804 2941052 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2941128 2941217 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2941288 2941481 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2941555 2941672 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild exon 2941732 2941892 . + . gene_id "RvY_01039"; transcript_id "RvY_01039.2"; Scaffold001 rebuild transcript 2942350 2946735 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[HEAT] HEAT repeat"; KO "K15424"; Scaffold001 rebuild exon 2942350 2942782 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2943040 2943351 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2943412 2943740 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2943866 2944204 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2944286 2944591 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2944651 2945103 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2945497 2945732 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2945914 2946428 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild exon 2946680 2946735 . - . gene_id "RvY_01040"; transcript_id "RvY_01040.1"; Scaffold001 rebuild transcript 2947027 2947980 . - . gene_id "RvY_01041"; transcript_id "RvY_01041.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2947027 2947555 . - . gene_id "RvY_01041"; transcript_id "RvY_01041.1"; Scaffold001 rebuild exon 2947862 2947980 . - . gene_id "RvY_01041"; transcript_id "RvY_01041.1"; Scaffold001 rebuild transcript 2948920 2949882 . - . gene_id "RvY_01042"; transcript_id "RvY_01042.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2948920 2949012 . - . gene_id "RvY_01042"; transcript_id "RvY_01042.1"; Scaffold001 rebuild exon 2949093 2949138 . - . gene_id "RvY_01042"; transcript_id "RvY_01042.1"; Scaffold001 rebuild exon 2949265 2949401 . - . gene_id "RvY_01042"; transcript_id "RvY_01042.1"; Scaffold001 rebuild exon 2949522 2949675 . - . gene_id "RvY_01042"; transcript_id "RvY_01042.1"; Scaffold001 rebuild exon 2949791 2949882 . - . gene_id "RvY_01042"; transcript_id "RvY_01042.1"; Scaffold001 rebuild transcript 2951436 2954877 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; gene_name "GPR64"; annotation "G protein-coupled receptor 64"; Pfam "[Cadherin]|[7tm_2] 7 transmembrane receptor (Secretin family)|[GPS] Latrophilin/CL-1-like GPS domain"; KO "K08451"; Scaffold001 rebuild exon 2951436 2951840 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2951929 2952124 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2952219 2952294 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2952349 2952449 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2952512 2952682 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2952805 2952929 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2953008 2953105 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2953175 2953683 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2953759 2953850 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2953943 2954266 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2954330 2954748 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild exon 2954823 2954877 . - . gene_id "RvY_01043"; transcript_id "RvY_01043.1"; Scaffold001 rebuild transcript 2955985 2957617 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.1"; gene_name "CFL"; annotation "Cofilin/actin-depolymerizing factor homolog"; Pfam "[Cofilin_ADF] Cofilin/tropomyosin-type actin-binding protein"; CDD "Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers."; KO "K05765"; similar_genes "CADF_DROME(e-value:1.3e-57;bit-score:220.0)"; Scaffold001 rebuild exon 2955985 2956150 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.1"; Scaffold001 rebuild exon 2956372 2956578 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.1"; Scaffold001 rebuild exon 2957034 2957104 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.1"; Scaffold001 rebuild exon 2957615 2957617 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.1"; Scaffold001 rebuild transcript 2955985 2957346 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.2"; gene_name "CFL"; annotation "Cofilin/actin-depolymerizing factor homolog"; Pfam "[Cofilin_ADF] Cofilin/tropomyosin-type actin-binding protein"; CDD "Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers."; KO "K05765"; similar_genes "CADF_DROME(e-value:1.3e-57;bit-score:220.0)"; Scaffold001 rebuild exon 2955985 2956150 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.2"; Scaffold001 rebuild exon 2956372 2956578 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.2"; Scaffold001 rebuild exon 2957034 2957104 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.2"; Scaffold001 rebuild exon 2957344 2957346 . - . gene_id "RvY_01044"; transcript_id "RvY_01044.2"; Scaffold001 rebuild transcript 2959071 2960085 . + . gene_id "RvY_01045"; transcript_id "RvY_01045.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2959071 2959414 . + . gene_id "RvY_01045"; transcript_id "RvY_01045.1"; Scaffold001 rebuild exon 2959429 2959601 . + . gene_id "RvY_01045"; transcript_id "RvY_01045.1"; Scaffold001 rebuild exon 2959775 2960085 . + . gene_id "RvY_01045"; transcript_id "RvY_01045.1"; Scaffold001 rebuild transcript 2960595 2961002 . - . gene_id "RvY_01046"; transcript_id "RvY_01046.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 2960595 2961002 . - . gene_id "RvY_01046"; transcript_id "RvY_01046.1"; Scaffold001 rebuild transcript 2963294 2970710 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; annotation "hypothetical protein."; Pfam "[OST-HTH] OST-HTH/LOTUS domain|[NYN]|[Limkain-b1] Limkain b1"; Scaffold001 rebuild exon 2963294 2963405 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2963502 2963698 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2963830 2963947 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2964007 2964023 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2964681 2964836 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2964903 2965075 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2965306 2965898 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2966138 2966316 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2966517 2966776 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2966858 2966938 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2967001 2967133 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2967220 2967401 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2968125 2968309 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2968385 2968596 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2968705 2969005 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2969835 2970034 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2970103 2970327 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2970388 2970486 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild exon 2970576 2970710 . + . gene_id "RvY_01047"; transcript_id "RvY_01047.1"; Scaffold001 rebuild transcript 2971338 2972484 . + . gene_id "RvY_01048"; transcript_id "RvY_01048.1"; annotation "hypothetical protein."; Pfam "[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold001 rebuild exon 2971338 2971392 . + . gene_id "RvY_01048"; transcript_id "RvY_01048.1"; Scaffold001 rebuild exon 2971472 2971618 . + . gene_id "RvY_01048"; transcript_id "RvY_01048.1"; Scaffold001 rebuild exon 2971849 2972086 . + . gene_id "RvY_01048"; transcript_id "RvY_01048.1"; Scaffold001 rebuild exon 2972147 2972245 . + . gene_id "RvY_01048"; transcript_id "RvY_01048.1"; Scaffold001 rebuild exon 2972307 2972484 . + . gene_id "RvY_01048"; transcript_id "RvY_01048.1"; Scaffold001 rebuild transcript 2973055 2974945 . + . gene_id "RvY_01049"; transcript_id "RvY_01049.1"; gene_name "KAZAL"; annotation "hypothetical protein."; Pfam "[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; CDD "Kazal type serine protease inhibitors. Kazal type serine protease inhibitors and follistatin-like domains."; Scaffold001 rebuild exon 2973055 2973115 . + . gene_id "RvY_01049"; transcript_id "RvY_01049.1"; Scaffold001 rebuild exon 2973228 2973707 . + . gene_id "RvY_01049"; transcript_id "RvY_01049.1"; Scaffold001 rebuild exon 2973774 2974175 . + . gene_id "RvY_01049"; transcript_id "RvY_01049.1"; Scaffold001 rebuild exon 2974253 2974358 . + . gene_id "RvY_01049"; transcript_id "RvY_01049.1"; Scaffold001 rebuild exon 2974444 2974945 . + . gene_id "RvY_01049"; transcript_id "RvY_01049.1"; Scaffold001 rebuild transcript 2975307 2975652 . - . gene_id "RvY_01050"; transcript_id "RvY_01050.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2975307 2975387 . - . gene_id "RvY_01050"; transcript_id "RvY_01050.1"; Scaffold001 rebuild exon 2975451 2975563 . - . gene_id "RvY_01050"; transcript_id "RvY_01050.1"; Scaffold001 rebuild exon 2975643 2975652 . - . gene_id "RvY_01050"; transcript_id "RvY_01050.1"; Scaffold001 rebuild transcript 2975707 2977041 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; Scaffold001 rebuild exon 2975707 2975805 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.1"; Scaffold001 rebuild exon 2975885 2976033 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.1"; Scaffold001 rebuild exon 2976157 2976645 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.1"; Scaffold001 rebuild exon 2976717 2977041 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.1"; Scaffold001 rebuild transcript 2975816 2977041 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.2"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; Scaffold001 rebuild exon 2975816 2976033 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.2"; Scaffold001 rebuild exon 2976157 2976645 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.2"; Scaffold001 rebuild exon 2976717 2977041 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.2"; Scaffold001 rebuild transcript 2976107 2977041 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.3"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; Scaffold001 rebuild exon 2976107 2976645 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.3"; Scaffold001 rebuild exon 2976717 2977041 . - . gene_id "RvY_01051"; transcript_id "RvY_01051.3"; Scaffold001 rebuild transcript 2978465 2980366 . + . gene_id "RvY_01052"; transcript_id "RvY_01052.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2978465 2978534 . + . gene_id "RvY_01052"; transcript_id "RvY_01052.1"; Scaffold001 rebuild exon 2978623 2978913 . + . gene_id "RvY_01052"; transcript_id "RvY_01052.1"; Scaffold001 rebuild exon 2979702 2980033 . + . gene_id "RvY_01052"; transcript_id "RvY_01052.1"; Scaffold001 rebuild exon 2980159 2980203 . + . gene_id "RvY_01052"; transcript_id "RvY_01052.1"; Scaffold001 rebuild exon 2980286 2980366 . + . gene_id "RvY_01052"; transcript_id "RvY_01052.1"; Scaffold001 rebuild transcript 2981156 2984000 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; gene_name "GGA"; annotation "ADP-ribosylation factor-binding protein GGA"; Pfam "[VHS]|[GAT]|[Alpha_adaptinC2] Adaptin C-terminal domain"; CDD "VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system."; KO "K12404"; similar_genes "GGA3_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold001 rebuild exon 2981156 2981186 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2981254 2981414 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2981497 2981595 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2981721 2981942 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2981999 2982320 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2982380 2982490 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2982582 2982890 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2982980 2983121 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2983179 2983438 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2983506 2983669 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2983740 2983850 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild exon 2983911 2984000 . + . gene_id "RvY_01053"; transcript_id "RvY_01053.1"; Scaffold001 rebuild transcript 2984369 2985007 . - . gene_id "RvY_01054"; transcript_id "RvY_01054.1"; annotation "hypothetical protein."; Pfam "[HSP20] Hsp20/alpha crystallin family"; Scaffold001 rebuild exon 2984369 2985007 . - . gene_id "RvY_01054"; transcript_id "RvY_01054.1"; Scaffold001 rebuild transcript 2986045 2986861 . + . gene_id "RvY_01055"; transcript_id "RvY_01055.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2986045 2986208 . + . gene_id "RvY_01055"; transcript_id "RvY_01055.2"; Scaffold001 rebuild exon 2986337 2986612 . + . gene_id "RvY_01055"; transcript_id "RvY_01055.2"; Scaffold001 rebuild exon 2986711 2986861 . + . gene_id "RvY_01055"; transcript_id "RvY_01055.2"; Scaffold001 rebuild transcript 2987211 2988775 . - . gene_id "RvY_01056"; transcript_id "RvY_01056.1"; gene_name "SERPIN"; annotation "hypothetical protein."; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors."; KO "K13963"; similar_genes "ILEUA_RAT(e-value:1.4e-12;bit-score:71.0)"; Scaffold001 rebuild exon 2987211 2987383 . - . gene_id "RvY_01056"; transcript_id "RvY_01056.1"; Scaffold001 rebuild exon 2987470 2988094 . - . gene_id "RvY_01056"; transcript_id "RvY_01056.1"; Scaffold001 rebuild exon 2988389 2988775 . - . gene_id "RvY_01056"; transcript_id "RvY_01056.1"; Scaffold001 rebuild transcript 2989634 2992244 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2989634 2989851 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; Scaffold001 rebuild exon 2989914 2990129 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; Scaffold001 rebuild exon 2990198 2990491 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; Scaffold001 rebuild exon 2990595 2991742 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; Scaffold001 rebuild exon 2991846 2992140 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; Scaffold001 rebuild exon 2992205 2992244 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.1"; Scaffold001 rebuild transcript 2989593 2992244 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2989593 2989595 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild exon 2989661 2989851 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild exon 2989914 2990129 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild exon 2990198 2990491 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild exon 2990595 2991742 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild exon 2991846 2992140 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild exon 2992205 2992244 . - . gene_id "RvY_01057"; transcript_id "RvY_01057.2"; Scaffold001 rebuild transcript 2993654 2995589 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.1"; annotation "hypothetical protein."; Pfam "[IRF-2BP1_2] Interferon regulatory factor 2-binding protein zinc finger"; similar_genes "I2B2B_DANRE(e-value:2.1e-13;bit-score:74.0)"; Scaffold001 rebuild exon 2993654 2993768 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.1"; Scaffold001 rebuild exon 2994081 2994406 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.1"; Scaffold001 rebuild exon 2994577 2995085 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.1"; Scaffold001 rebuild exon 2995303 2995346 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.1"; Scaffold001 rebuild exon 2995411 2995589 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.1"; Scaffold001 rebuild transcript 2993975 2995589 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.2"; annotation "hypothetical protein."; Pfam "[IRF-2BP1_2] Interferon regulatory factor 2-binding protein zinc finger"; similar_genes "I2B2B_DANRE(e-value:2.1e-13;bit-score:74.0)"; Scaffold001 rebuild exon 2993975 2994406 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.2"; Scaffold001 rebuild exon 2994577 2995085 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.2"; Scaffold001 rebuild exon 2995303 2995346 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.2"; Scaffold001 rebuild exon 2995411 2995589 . - . gene_id "RvY_01058"; transcript_id "RvY_01058.2"; Scaffold001 rebuild transcript 2996257 2997005 . - . gene_id "RvY_01059"; transcript_id "RvY_01059.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2996257 2996304 . - . gene_id "RvY_01059"; transcript_id "RvY_01059.1"; Scaffold001 rebuild exon 2996415 2997005 . - . gene_id "RvY_01059"; transcript_id "RvY_01059.1"; Scaffold001 rebuild transcript 2996268 2996860 . - . gene_id "RvY_01059"; transcript_id "RvY_01059.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2996268 2996304 . - . gene_id "RvY_01059"; transcript_id "RvY_01059.2"; Scaffold001 rebuild exon 2996415 2996860 . - . gene_id "RvY_01059"; transcript_id "RvY_01059.2"; Scaffold001 rebuild transcript 2997981 2998534 . + . gene_id "RvY_01060"; transcript_id "RvY_01060.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 2997981 2998284 . + . gene_id "RvY_01060"; transcript_id "RvY_01060.1"; Scaffold001 rebuild exon 2998344 2998534 . + . gene_id "RvY_01060"; transcript_id "RvY_01060.1"; Scaffold001 rebuild transcript 2998654 2999544 . + . gene_id "RvY_01061"; transcript_id "RvY_01061.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 2998654 2998795 . + . gene_id "RvY_01061"; transcript_id "RvY_01061.1"; Scaffold001 rebuild exon 2999345 2999544 . + . gene_id "RvY_01061"; transcript_id "RvY_01061.1"; Scaffold001 rebuild transcript 2999582 3001188 . + . gene_id "RvY_01062"; transcript_id "RvY_01062.1"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold001 rebuild exon 2999582 2999717 . + . gene_id "RvY_01062"; transcript_id "RvY_01062.1"; Scaffold001 rebuild exon 2999796 3000086 . + . gene_id "RvY_01062"; transcript_id "RvY_01062.1"; Scaffold001 rebuild exon 3000159 3000395 . + . gene_id "RvY_01062"; transcript_id "RvY_01062.1"; Scaffold001 rebuild exon 3000560 3001188 . + . gene_id "RvY_01062"; transcript_id "RvY_01062.1"; Scaffold001 rebuild transcript 3002627 3003212 . + . gene_id "RvY_01063"; transcript_id "RvY_01063.1"; annotation "putative Atrial natriuretic peptide receptor 2"; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:2.2e-40;bit-score:163.0)"; Scaffold001 rebuild exon 3002627 3002629 . + . gene_id "RvY_01063"; transcript_id "RvY_01063.1"; Scaffold001 rebuild exon 3002692 3002839 . + . gene_id "RvY_01063"; transcript_id "RvY_01063.1"; Scaffold001 rebuild exon 3002903 3002951 . + . gene_id "RvY_01063"; transcript_id "RvY_01063.1"; Scaffold001 rebuild exon 3003026 3003212 . + . gene_id "RvY_01063"; transcript_id "RvY_01063.1"; Scaffold001 rebuild transcript 3003355 3003555 . - . gene_id "RvY_01064"; transcript_id "RvY_01064.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3003355 3003555 . - . gene_id "RvY_01064"; transcript_id "RvY_01064.1"; Scaffold001 rebuild transcript 3006014 3009075 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; gene_name "K01509"; annotation "adenosinetriphosphatase [EC:3.6.1.3]"; Pfam "[GDA1_CD39] GDA1/CD39 (nucleoside phosphatase) family"; CDD "GDA1/CD39 (nucleoside phosphatase) family."; EC "EC3.6.1.3"; KO "K01509"; Scaffold001 rebuild exon 3006014 3006123 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3006188 3006312 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3006694 3006824 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3006895 3006940 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3007067 3007138 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3007321 3007468 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3007530 3007876 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3008100 3008422 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3008481 3008606 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3008693 3008818 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild exon 3008878 3009075 . + . gene_id "RvY_01065"; transcript_id "RvY_01065.1"; Scaffold001 rebuild transcript 3010620 3016346 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 3010620 3012688 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3012860 3013537 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3013616 3013852 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3013922 3014148 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3014225 3014360 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3014420 3014563 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3014633 3014896 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3014960 3015193 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3015416 3015507 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3015600 3015636 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3015701 3015801 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3015868 3016012 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3016095 3016202 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild exon 3016283 3016346 . - . gene_id "RvY_01066"; transcript_id "RvY_01066.1"; Scaffold001 rebuild transcript 3017041 3023354 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; annotation "Zinc finger SWIM domain-containing protein KIAA0913"; similar_genes "K0913_MOUSE(e-value:3.0e-61;bit-score:233.0)"; Scaffold001 rebuild exon 3017041 3017272 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3017460 3018039 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3018392 3018865 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3019080 3019582 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3019710 3020202 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3020327 3020947 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3021177 3021750 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3021808 3022003 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3022066 3022373 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3022445 3022626 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3022713 3022807 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3022888 3023044 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild exon 3023129 3023354 . - . gene_id "RvY_01067"; transcript_id "RvY_01067.1"; Scaffold001 rebuild transcript 3024076 3026049 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3024076 3024450 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3024546 3024597 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3024662 3024774 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3024855 3024970 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3025034 3025103 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3025226 3025336 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3025447 3025673 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3025738 3025877 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild exon 3025952 3026049 . + . gene_id "RvY_01068"; transcript_id "RvY_01068.1"; Scaffold001 rebuild transcript 3026154 3026468 . - . gene_id "RvY_01069"; transcript_id "RvY_01069.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3026154 3026468 . - . gene_id "RvY_01069"; transcript_id "RvY_01069.1"; Scaffold001 rebuild transcript 3026682 3032344 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; annotation "hypothetical protein."; Pfam "[SH3BP5] SH3 domain-binding protein 5 (SH3BP5)"; Scaffold001 rebuild exon 3026682 3026876 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3027012 3027539 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3027924 3028097 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3028278 3028330 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3028669 3028777 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3029333 3029461 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3029690 3029752 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild exon 3032222 3032344 . - . gene_id "RvY_01070"; transcript_id "RvY_01070.1"; Scaffold001 rebuild transcript 3033312 3036247 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; gene_name "CED-6"; annotation "hypothetical protein."; Pfam "[PTB] Phosphotyrosine-binding domain|[PID] Phosphotyrosine interaction domain (PTB/PID)"; CDD "CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; similar_genes "GULP1_DANRE(e-value:3.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 3033312 3033354 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3034094 3034153 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3034234 3034298 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3034373 3034444 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3034629 3034871 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3034946 3035062 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3035133 3035228 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3035559 3035751 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3035813 3036087 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild exon 3036152 3036247 . + . gene_id "RvY_01071"; transcript_id "RvY_01071.1"; Scaffold001 rebuild transcript 3037386 3037732 . + . gene_id "RvY_01072"; transcript_id "RvY_01072.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3037386 3037467 . + . gene_id "RvY_01072"; transcript_id "RvY_01072.1"; Scaffold001 rebuild exon 3037581 3037732 . + . gene_id "RvY_01072"; transcript_id "RvY_01072.1"; Scaffold001 rebuild transcript 3038337 3045614 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; product "Vitellogenin"; gene_name "Vitellogenin_N"; annotation "Vitellogenin | hypothetical protein."; Pfam "[VWD] von Willebrand factor type D domain|[DUF1943]|[Vitellogenin_N] Lipoprotein amino terminal region"; CDD "Lipoprotein amino terminal region. This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains."; Scaffold001 rebuild exon 3038337 3038537 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3038803 3039120 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3039193 3039350 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3039415 3039780 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3039859 3040142 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3040220 3040593 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3040737 3041204 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3041347 3041514 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3041597 3042124 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3042189 3042408 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3042509 3042924 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3043035 3043443 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3043672 3044123 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3044225 3044311 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3044430 3044675 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3044790 3045161 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3045251 3045498 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild exon 3045572 3045614 . - . gene_id "RvY_01073"; transcript_id "RvY_01073.1"; Scaffold001 rebuild transcript 3046975 3051833 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold001 rebuild exon 3046975 3047307 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3047401 3047470 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3047557 3047662 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3047753 3047910 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3048046 3048626 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3048859 3048957 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3049052 3049332 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3050327 3050515 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3050650 3050826 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3050914 3051140 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3051234 3051330 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild exon 3051422 3051833 . - . gene_id "RvY_01074"; transcript_id "RvY_01074.1"; Scaffold001 rebuild transcript 3053105 3054184 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; similar_genes "(1)TSN31_DANRE(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 3053105 3053179 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.1"; Scaffold001 rebuild exon 3053272 3053439 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.1"; Scaffold001 rebuild exon 3053520 3053750 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.1"; Scaffold001 rebuild exon 3053820 3053987 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.1"; Scaffold001 rebuild exon 3054122 3054184 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.1"; Scaffold001 rebuild transcript 3052947 3053398 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.2"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; similar_genes "(1)TSN31_DANRE(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 3052947 3053179 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.2"; Scaffold001 rebuild exon 3053272 3053398 . - . gene_id "RvY_01075"; transcript_id "RvY_01075.2"; Scaffold001 rebuild transcript 3057081 3061702 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3057081 3057109 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3057171 3057742 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3057982 3058477 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3058607 3058749 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3059002 3059496 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3059938 3060250 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3060428 3060666 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3060738 3060872 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild exon 3061005 3061702 . + . gene_id "RvY_01076"; transcript_id "RvY_01076.1"; Scaffold001 rebuild transcript 3062296 3062631 . + . gene_id "RvY_01077"; transcript_id "RvY_01077.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3062296 3062631 . + . gene_id "RvY_01077"; transcript_id "RvY_01077.1"; Scaffold001 rebuild transcript 3063541 3063966 . - . gene_id "RvY_01078"; transcript_id "RvY_01078.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3063541 3063966 . - . gene_id "RvY_01078"; transcript_id "RvY_01078.1"; Scaffold001 rebuild transcript 3063619 3063960 . + . gene_id "RvY_01079"; transcript_id "RvY_01079.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3063619 3063960 . + . gene_id "RvY_01079"; transcript_id "RvY_01079.1"; Scaffold001 rebuild transcript 3069772 3074293 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; gene_name "Ig3_Contactin_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma."; similar_genes "MUC1_XENLA(e-value:6.1e-13;bit-score:72.0)"; Scaffold001 rebuild exon 3069772 3070219 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3070554 3070981 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3071132 3071605 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3071800 3072582 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3072635 3073171 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3073236 3073593 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3073664 3073890 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3073958 3074021 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild exon 3074088 3074293 . + . gene_id "RvY_01080"; transcript_id "RvY_01080.1"; Scaffold001 rebuild transcript 3074710 3075683 . - . gene_id "RvY_01081"; transcript_id "RvY_01081.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3074710 3074815 . - . gene_id "RvY_01081"; transcript_id "RvY_01081.1"; Scaffold001 rebuild exon 3074902 3075031 . - . gene_id "RvY_01081"; transcript_id "RvY_01081.1"; Scaffold001 rebuild exon 3075105 3075138 . - . gene_id "RvY_01081"; transcript_id "RvY_01081.1"; Scaffold001 rebuild exon 3075222 3075354 . - . gene_id "RvY_01081"; transcript_id "RvY_01081.1"; Scaffold001 rebuild exon 3075433 3075683 . - . gene_id "RvY_01081"; transcript_id "RvY_01081.1"; Scaffold001 rebuild transcript 3076334 3077136 . - . gene_id "RvY_01082"; transcript_id "RvY_01082.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3076334 3076569 . - . gene_id "RvY_01082"; transcript_id "RvY_01082.1"; Scaffold001 rebuild exon 3076638 3076807 . - . gene_id "RvY_01082"; transcript_id "RvY_01082.1"; Scaffold001 rebuild exon 3076883 3077136 . - . gene_id "RvY_01082"; transcript_id "RvY_01082.1"; Scaffold001 rebuild transcript 3076192 3076545 . - . gene_id "RvY_01082"; transcript_id "RvY_01082.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3076192 3076545 . - . gene_id "RvY_01082"; transcript_id "RvY_01082.2"; Scaffold001 rebuild transcript 3077660 3078584 . - . gene_id "RvY_01083"; transcript_id "RvY_01083.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3077660 3077762 . - . gene_id "RvY_01083"; transcript_id "RvY_01083.1"; Scaffold001 rebuild exon 3077830 3077993 . - . gene_id "RvY_01083"; transcript_id "RvY_01083.1"; Scaffold001 rebuild exon 3078069 3078204 . - . gene_id "RvY_01083"; transcript_id "RvY_01083.1"; Scaffold001 rebuild exon 3078331 3078584 . - . gene_id "RvY_01083"; transcript_id "RvY_01083.1"; Scaffold001 rebuild transcript 3079164 3080487 . - . gene_id "RvY_01084"; transcript_id "RvY_01084.1"; annotation "hypothetical protein."; Pfam "[Troponin]"; Scaffold001 rebuild exon 3079164 3079640 . - . gene_id "RvY_01084"; transcript_id "RvY_01084.1"; Scaffold001 rebuild exon 3079719 3079940 . - . gene_id "RvY_01084"; transcript_id "RvY_01084.1"; Scaffold001 rebuild exon 3080021 3080173 . - . gene_id "RvY_01084"; transcript_id "RvY_01084.1"; Scaffold001 rebuild exon 3080249 3080335 . - . gene_id "RvY_01084"; transcript_id "RvY_01084.1"; Scaffold001 rebuild exon 3080401 3080487 . - . gene_id "RvY_01084"; transcript_id "RvY_01084.1"; Scaffold001 rebuild transcript 3081790 3093654 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; gene_name "Ig2_Necl-1-4_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[C1-set] Immunoglobulin C1-set domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression."; Scaffold001 rebuild exon 3081790 3081948 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3082071 3082251 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3082323 3082359 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3082447 3082560 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3082642 3082986 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3083204 3083476 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3083542 3083799 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3083911 3083964 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3084037 3084179 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3084453 3084777 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3084992 3085123 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild exon 3093594 3093654 . - . gene_id "RvY_01085"; transcript_id "RvY_01085.1"; Scaffold001 rebuild transcript 3097988 3098845 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 3097988 3098099 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; Scaffold001 rebuild exon 3098222 3098254 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; Scaffold001 rebuild exon 3098342 3098425 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; Scaffold001 rebuild exon 3098495 3098518 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; Scaffold001 rebuild exon 3098589 3098623 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; Scaffold001 rebuild exon 3098705 3098845 . + . gene_id "RvY_01086"; transcript_id "RvY_01086.1"; Scaffold001 rebuild transcript 3099211 3100411 . - . gene_id "RvY_01087"; transcript_id "RvY_01087.1"; annotation "hypothetical protein."; Pfam "[DUF3585]"; Scaffold001 rebuild exon 3099211 3099259 . - . gene_id "RvY_01087"; transcript_id "RvY_01087.1"; Scaffold001 rebuild exon 3099325 3099513 . - . gene_id "RvY_01087"; transcript_id "RvY_01087.1"; Scaffold001 rebuild exon 3099576 3100107 . - . gene_id "RvY_01087"; transcript_id "RvY_01087.1"; Scaffold001 rebuild exon 3100177 3100411 . - . gene_id "RvY_01087"; transcript_id "RvY_01087.1"; Scaffold001 rebuild transcript 3100506 3106017 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; annotation "Protein MICAL-2"; Pfam "[FAD_binding_3] FAD binding domain|[FAD_binding_2] FAD binding domain|[CH] Calponin homology (CH) domain|[LIM]"; similar_genes "MICA2_MOUSE(e-value:1.7e-106;bit-score:383.0)"; Scaffold001 rebuild exon 3100506 3101005 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3101301 3101766 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3102107 3102748 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3103227 3103511 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3103709 3103910 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3103977 3104320 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3104383 3104640 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3104843 3105318 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3105391 3105598 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild exon 3105688 3106017 . - . gene_id "RvY_01088"; transcript_id "RvY_01088.1"; Scaffold001 rebuild transcript 3111241 3113496 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; gene_name "RFX1_2_3"; annotation "regulatory factor X 1/2/3"; Pfam "[RFX_DNA_binding] RFX DNA-binding domain"; KO "K09173"; similar_genes "RFX2_BOVIN(e-value:7.8e-09;bit-score:58.0)"; Scaffold001 rebuild exon 3111241 3111342 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3111399 3111470 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3111526 3111638 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3111722 3112207 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3112271 3112517 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3112590 3112739 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3112844 3113073 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3113138 3113198 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3113284 3113376 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild exon 3113458 3113496 . + . gene_id "RvY_01089"; transcript_id "RvY_01089.1"; Scaffold001 rebuild transcript 3114041 3114247 . + . gene_id "RvY_01090"; transcript_id "RvY_01090.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3114041 3114247 . + . gene_id "RvY_01090"; transcript_id "RvY_01090.1"; Scaffold001 rebuild transcript 3114388 3126244 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; gene_name "LPD_N"; annotation "hypothetical protein."; Pfam "[VWD] von Willebrand factor type D domain|[C8]|[DUF1943]|[Vitellogenin_N] Lipoprotein amino terminal region"; CDD "Lipoprotein N-terminal Domain."; KO "K14462"; Scaffold001 rebuild exon 3114388 3114445 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3114524 3114604 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3114708 3114859 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3115013 3115483 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3115562 3115713 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3115789 3116257 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3116382 3117121 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3117216 3117487 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3117577 3117920 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3117996 3118773 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3118854 3119550 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3119690 3120151 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3120257 3120533 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3120609 3121201 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3121309 3122076 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3122198 3122534 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3122622 3122876 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3122948 3123401 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3123502 3124022 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3124146 3124961 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3125045 3125454 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3125554 3125722 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild exon 3125819 3126244 . + . gene_id "RvY_01091"; transcript_id "RvY_01091.1"; Scaffold001 rebuild transcript 3126798 3127555 . + . gene_id "RvY_01092"; transcript_id "RvY_01092.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3126798 3126969 . + . gene_id "RvY_01092"; transcript_id "RvY_01092.1"; Scaffold001 rebuild exon 3127059 3127555 . + . gene_id "RvY_01092"; transcript_id "RvY_01092.1"; Scaffold001 rebuild transcript 3127828 3128600 . - . gene_id "RvY_01093"; transcript_id "RvY_01093.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3127828 3128271 . - . gene_id "RvY_01093"; transcript_id "RvY_01093.1"; Scaffold001 rebuild exon 3128335 3128366 . - . gene_id "RvY_01093"; transcript_id "RvY_01093.1"; Scaffold001 rebuild exon 3128435 3128600 . - . gene_id "RvY_01093"; transcript_id "RvY_01093.1"; Scaffold001 rebuild transcript 3130747 3132020 . + . gene_id "RvY_01094"; transcript_id "RvY_01094.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3130747 3131308 . + . gene_id "RvY_01094"; transcript_id "RvY_01094.1"; Scaffold001 rebuild exon 3131509 3132020 . + . gene_id "RvY_01094"; transcript_id "RvY_01094.1"; Scaffold001 rebuild transcript 3132451 3134944 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 3132451 3132711 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3132787 3132900 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3132994 3133152 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3133222 3133447 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3133513 3133803 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3134022 3134429 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3134689 3134738 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild exon 3134804 3134944 . - . gene_id "RvY_01095"; transcript_id "RvY_01095.1"; Scaffold001 rebuild transcript 3136858 3138097 . - . gene_id "RvY_01096"; transcript_id "RvY_01096.1"; product "CAHS6"; annotation "CAHS6 | hypothetical protein."; Scaffold001 rebuild exon 3136858 3136964 . - . gene_id "RvY_01096"; transcript_id "RvY_01096.1"; Scaffold001 rebuild exon 3137162 3137429 . - . gene_id "RvY_01096"; transcript_id "RvY_01096.1"; Scaffold001 rebuild exon 3137741 3138097 . - . gene_id "RvY_01096"; transcript_id "RvY_01096.1"; Scaffold001 rebuild transcript 3138226 3138816 . + . gene_id "RvY_01097"; transcript_id "RvY_01097.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3138226 3138475 . + . gene_id "RvY_01097"; transcript_id "RvY_01097.1"; Scaffold001 rebuild exon 3138593 3138816 . + . gene_id "RvY_01097"; transcript_id "RvY_01097.1"; Scaffold001 rebuild transcript 3139093 3141656 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold001 rebuild exon 3139093 3139214 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3139284 3139409 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3139474 3140118 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3140377 3140817 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3140897 3141040 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3141128 3141287 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3141382 3141428 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild exon 3141554 3141656 . - . gene_id "RvY_01098"; transcript_id "RvY_01098.1"; Scaffold001 rebuild transcript 3141997 3142961 . - . gene_id "RvY_01099"; transcript_id "RvY_01099.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction|[L_HGMIC_fpl] Lipoma HMGIC fusion partner-like protein|[PMP22_Claudin] PMP-22/EMP/MP20/Claudin family"; Scaffold001 rebuild exon 3141997 3142301 . - . gene_id "RvY_01099"; transcript_id "RvY_01099.1"; Scaffold001 rebuild exon 3142360 3142506 . - . gene_id "RvY_01099"; transcript_id "RvY_01099.1"; Scaffold001 rebuild exon 3142597 3142678 . - . gene_id "RvY_01099"; transcript_id "RvY_01099.1"; Scaffold001 rebuild exon 3142758 3142961 . - . gene_id "RvY_01099"; transcript_id "RvY_01099.1"; Scaffold001 rebuild transcript 3144380 3150584 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; gene_name "LLGL"; annotation "lethal giant larvae"; Pfam "[LLGL] LLGL2|[WD40] WD domain, G-beta repeat|[Lgl_C] Lethal giant larvae(Lgl) like, C-terminal"; KO "K06094"; similar_genes "L2GL2_MOUSE(e-value:7.6e-24;bit-score:108.0)"; Scaffold001 rebuild exon 3144380 3144478 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3144917 3145014 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3145320 3145401 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3145487 3145596 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3145672 3145818 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3146029 3146101 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3146165 3146248 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3146501 3146819 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3147093 3147712 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3148491 3148666 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3148744 3148977 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3149045 3149169 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3149241 3149512 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3149587 3149692 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3149759 3149879 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3149945 3150325 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild exon 3150518 3150584 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.1"; Scaffold001 rebuild transcript 3144380 3150329 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; gene_name "LLGL"; annotation "lethal giant larvae"; Pfam "[LLGL] LLGL2|[WD40] WD domain, G-beta repeat|[Lgl_C] Lethal giant larvae(Lgl) like, C-terminal"; KO "K06094"; similar_genes "L2GL2_MOUSE(e-value:7.6e-24;bit-score:108.0)"; Scaffold001 rebuild exon 3144380 3144478 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3144917 3145014 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3145320 3145401 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3145487 3145596 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3145672 3145818 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3146029 3146101 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3146165 3146248 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3146501 3146819 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3147093 3147712 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3148491 3148666 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3148744 3148977 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3149045 3149169 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3149241 3149512 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3149587 3149692 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3149759 3149879 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild exon 3149945 3150329 . + . gene_id "RvY_01100"; transcript_id "RvY_01100.2"; Scaffold001 rebuild transcript 3151078 3151886 . - . gene_id "RvY_01101"; transcript_id "RvY_01101.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3151078 3151153 . - . gene_id "RvY_01101"; transcript_id "RvY_01101.1"; Scaffold001 rebuild exon 3151351 3151886 . - . gene_id "RvY_01101"; transcript_id "RvY_01101.1"; Scaffold001 rebuild transcript 3152167 3152923 . - . gene_id "RvY_01102"; transcript_id "RvY_01102.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3152167 3152738 . - . gene_id "RvY_01102"; transcript_id "RvY_01102.1"; Scaffold001 rebuild exon 3152806 3152923 . - . gene_id "RvY_01102"; transcript_id "RvY_01102.1"; Scaffold001 rebuild transcript 3154050 3155556 . + . gene_id "RvY_01103"; transcript_id "RvY_01103.1"; gene_name "PRK13808"; annotation "hypothetical protein."; CDD "adenylate kinase; Provisional"; Scaffold001 rebuild exon 3154050 3154118 . + . gene_id "RvY_01103"; transcript_id "RvY_01103.1"; Scaffold001 rebuild exon 3154483 3154581 . + . gene_id "RvY_01103"; transcript_id "RvY_01103.1"; Scaffold001 rebuild exon 3154783 3155556 . + . gene_id "RvY_01103"; transcript_id "RvY_01103.1"; Scaffold001 rebuild transcript 3156593 3160724 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold001 rebuild exon 3156593 3156716 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3157939 3157985 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3158372 3158531 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3158625 3158768 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3159083 3159499 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3159655 3160302 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3160368 3160493 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild exon 3160564 3160724 . + . gene_id "RvY_01104"; transcript_id "RvY_01104.1"; Scaffold001 rebuild transcript 3161729 3161953 . - . gene_id "RvY_01105"; transcript_id "RvY_01105.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3161729 3161953 . - . gene_id "RvY_01105"; transcript_id "RvY_01105.1"; Scaffold001 rebuild transcript 3162340 3162681 . - . gene_id "RvY_01106"; transcript_id "RvY_01106.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3162340 3162681 . - . gene_id "RvY_01106"; transcript_id "RvY_01106.1"; Scaffold001 rebuild transcript 3162810 3164142 . - . gene_id "RvY_01107"; transcript_id "RvY_01107.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3162810 3162849 . - . gene_id "RvY_01107"; transcript_id "RvY_01107.1"; Scaffold001 rebuild exon 3162928 3163130 . - . gene_id "RvY_01107"; transcript_id "RvY_01107.1"; Scaffold001 rebuild exon 3163293 3163442 . - . gene_id "RvY_01107"; transcript_id "RvY_01107.1"; Scaffold001 rebuild exon 3163531 3163873 . - . gene_id "RvY_01107"; transcript_id "RvY_01107.1"; Scaffold001 rebuild exon 3164102 3164142 . - . gene_id "RvY_01107"; transcript_id "RvY_01107.1"; Scaffold001 rebuild transcript 3164221 3165107 . - . gene_id "RvY_01108"; transcript_id "RvY_01108.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3164221 3164501 . - . gene_id "RvY_01108"; transcript_id "RvY_01108.1"; Scaffold001 rebuild exon 3164785 3165011 . - . gene_id "RvY_01108"; transcript_id "RvY_01108.1"; Scaffold001 rebuild exon 3165103 3165107 . - . gene_id "RvY_01108"; transcript_id "RvY_01108.1"; Scaffold001 rebuild transcript 3165172 3165705 . - . gene_id "RvY_01109"; transcript_id "RvY_01109.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3165172 3165705 . - . gene_id "RvY_01109"; transcript_id "RvY_01109.1"; Scaffold001 rebuild transcript 3168504 3169329 . - . gene_id "RvY_01110"; transcript_id "RvY_01110.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3168504 3168591 . - . gene_id "RvY_01110"; transcript_id "RvY_01110.1"; Scaffold001 rebuild exon 3168737 3169091 . - . gene_id "RvY_01110"; transcript_id "RvY_01110.1"; Scaffold001 rebuild exon 3169170 3169329 . - . gene_id "RvY_01110"; transcript_id "RvY_01110.1"; Scaffold001 rebuild transcript 3169333 3169772 . - . gene_id "RvY_01111"; transcript_id "RvY_01111.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3169333 3169621 . - . gene_id "RvY_01111"; transcript_id "RvY_01111.1"; Scaffold001 rebuild exon 3169750 3169772 . - . gene_id "RvY_01111"; transcript_id "RvY_01111.1"; Scaffold001 rebuild transcript 3171444 3171674 . + . gene_id "RvY_01112"; transcript_id "RvY_01112.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3171444 3171674 . + . gene_id "RvY_01112"; transcript_id "RvY_01112.1"; Scaffold001 rebuild transcript 3173154 3175682 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; gene_name "RAB11FIP3_4"; annotation "Rab11 family-interacting protein 3/4"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; KO "K12485"; Scaffold001 rebuild exon 3173154 3173305 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3173563 3173661 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3173733 3173807 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3173881 3173916 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3174141 3174374 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3174439 3174529 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3174729 3174860 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3174931 3175068 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3175133 3175270 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3175340 3175483 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild exon 3175560 3175682 . + . gene_id "RvY_01113"; transcript_id "RvY_01113.1"; Scaffold001 rebuild transcript 3177876 3180422 . + . gene_id "RvY_01114"; transcript_id "RvY_01114.1"; gene_name "WNK"; annotation "putative Probable serine/threonine-protein kinase WNK2"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08867"; similar_genes "WNK2_ORYSJ(e-value:3.0e-44;bit-score:176.0)"; Scaffold001 rebuild exon 3177876 3178640 . + . gene_id "RvY_01114"; transcript_id "RvY_01114.1"; Scaffold001 rebuild exon 3178796 3179145 . + . gene_id "RvY_01114"; transcript_id "RvY_01114.1"; Scaffold001 rebuild exon 3179448 3179851 . + . gene_id "RvY_01114"; transcript_id "RvY_01114.1"; Scaffold001 rebuild exon 3180067 3180422 . + . gene_id "RvY_01114"; transcript_id "RvY_01114.1"; Scaffold001 rebuild transcript 3180834 3182499 . - . gene_id "RvY_01115"; transcript_id "RvY_01115.1"; gene_name "BECN1"; annotation "Beclin-1"; CDD "Autophagy protein Apg6. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway."; KO "K08334"; similar_genes "BECN1_XENLA(e-value:1.0e-61;bit-score:234.0)"; Scaffold001 rebuild exon 3180834 3181046 . - . gene_id "RvY_01115"; transcript_id "RvY_01115.1"; Scaffold001 rebuild exon 3181107 3181634 . - . gene_id "RvY_01115"; transcript_id "RvY_01115.1"; Scaffold001 rebuild exon 3181855 3182499 . - . gene_id "RvY_01115"; transcript_id "RvY_01115.1"; Scaffold001 rebuild transcript 3182871 3184443 . + . gene_id "RvY_01116"; transcript_id "RvY_01116.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3182871 3183071 . + . gene_id "RvY_01116"; transcript_id "RvY_01116.1"; Scaffold001 rebuild exon 3183141 3183296 . + . gene_id "RvY_01116"; transcript_id "RvY_01116.1"; Scaffold001 rebuild exon 3183383 3183636 . + . gene_id "RvY_01116"; transcript_id "RvY_01116.1"; Scaffold001 rebuild exon 3183720 3184443 . + . gene_id "RvY_01116"; transcript_id "RvY_01116.1"; Scaffold001 rebuild transcript 3185532 3189654 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; gene_name "DWB"; annotation "hypothetical protein."; CDD "Domain B in dwarfin family proteins."; Scaffold001 rebuild exon 3185532 3185632 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild exon 3185825 3186050 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild exon 3186229 3186410 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild exon 3186613 3186817 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild exon 3187111 3187266 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild exon 3187443 3187673 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild exon 3189517 3189654 . - . gene_id "RvY_01117"; transcript_id "RvY_01117.1"; Scaffold001 rebuild transcript 3190039 3190260 . + . gene_id "RvY_01118"; transcript_id "RvY_01118.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3190039 3190260 . + . gene_id "RvY_01118"; transcript_id "RvY_01118.1"; Scaffold001 rebuild transcript 3192055 3193490 . + . gene_id "RvY_01119"; transcript_id "RvY_01119.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3192055 3192302 . + . gene_id "RvY_01119"; transcript_id "RvY_01119.1"; Scaffold001 rebuild exon 3192385 3192445 . + . gene_id "RvY_01119"; transcript_id "RvY_01119.1"; Scaffold001 rebuild exon 3192527 3192570 . + . gene_id "RvY_01119"; transcript_id "RvY_01119.1"; Scaffold001 rebuild exon 3192662 3192720 . + . gene_id "RvY_01119"; transcript_id "RvY_01119.1"; Scaffold001 rebuild exon 3192817 3193490 . + . gene_id "RvY_01119"; transcript_id "RvY_01119.1"; Scaffold001 rebuild transcript 3194804 3197560 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; gene_name "(1,3)TyrKc(2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1,3)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "EC4.6.1.2"; similar_genes "ANPRB_ANGJA(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 3194804 3194996 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3195067 3195492 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3195783 3196216 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3196327 3196482 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3196555 3196699 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3196768 3197000 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3197076 3197199 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3197259 3197368 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild exon 3197450 3197560 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.1"; Scaffold001 rebuild transcript 3195773 3197560 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; gene_name "(1,3)TyrKc(2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1,3)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "EC4.6.1.2"; similar_genes "ANPRB_ANGJA(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 3195773 3196216 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild exon 3196327 3196482 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild exon 3196555 3196699 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild exon 3196768 3197000 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild exon 3197076 3197199 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild exon 3197259 3197368 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild exon 3197450 3197560 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.2"; Scaffold001 rebuild transcript 3194658 3196431 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.3"; gene_name "(1,3)TyrKc(2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1,3)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "EC4.6.1.2"; similar_genes "ANPRB_ANGJA(e-value:3.6e-13;bit-score:73.0)"; Scaffold001 rebuild exon 3194658 3194890 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.3"; Scaffold001 rebuild exon 3194950 3194996 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.3"; Scaffold001 rebuild exon 3195067 3195492 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.3"; Scaffold001 rebuild exon 3195783 3196216 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.3"; Scaffold001 rebuild exon 3196327 3196431 . - . gene_id "RvY_01120"; transcript_id "RvY_01120.3"; Scaffold001 rebuild transcript 3200051 3206648 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; annotation "hypothetical protein."; similar_genes "SLO_DROME(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 3200051 3200272 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3200533 3200772 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3201439 3201487 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3201576 3201648 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3201720 3201987 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3202055 3202279 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3202342 3202388 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3202465 3202575 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3202651 3202875 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3202933 3203018 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3203112 3203273 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3203352 3203435 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3203539 3203720 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3203832 3203960 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3204040 3204169 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3204243 3204353 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3204429 3204517 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3204584 3204658 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3204742 3204840 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3205205 3205356 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3205642 3205753 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3205820 3205922 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3206153 3206268 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild exon 3206394 3206648 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.1"; Scaffold001 rebuild transcript 3200051 3206697 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; annotation "hypothetical protein."; similar_genes "SLO_DROME(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 3200051 3200272 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3200533 3200772 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3201439 3201487 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3201576 3201648 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3201720 3201987 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3202055 3202279 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3202342 3202388 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3202465 3202575 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3202651 3202875 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3202933 3203018 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3203112 3203273 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3203352 3203435 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3203539 3203720 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3203832 3203960 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3204040 3204169 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3204243 3204353 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3204429 3204517 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3204584 3204658 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3204742 3204840 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3205205 3205356 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3205642 3205753 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3205820 3205922 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3206153 3206268 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3206394 3206589 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild exon 3206690 3206697 . - . gene_id "RvY_01121"; transcript_id "RvY_01121.2"; Scaffold001 rebuild transcript 3208481 3213821 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; annotation "hypothetical protein."; similar_genes "MYSB_ACACA(e-value:6.9e-12;bit-score:69.0)"; Scaffold001 rebuild exon 3208481 3208932 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3209035 3209178 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3209282 3209320 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3209424 3209631 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3209734 3209906 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3210014 3210167 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3210277 3210583 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3210684 3210776 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3210854 3211131 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3211261 3211526 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3211655 3211855 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3211933 3212318 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3212444 3212570 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3212643 3213296 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild exon 3213614 3213821 . - . gene_id "RvY_01122"; transcript_id "RvY_01122.1"; Scaffold001 rebuild transcript 3215046 3224401 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; gene_name "EIF2AK"; annotation "putative Eukaryotic translation initiation factor 2-alpha kinase 4"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08860"; similar_genes "E2AK4_HUMAN(e-value:4.0e-27;bit-score:119.0)"; Scaffold001 rebuild exon 3215046 3215153 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3215223 3215338 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3215439 3215541 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3215617 3215790 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3215884 3215964 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3216028 3216226 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3216298 3216569 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3216645 3216925 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3217011 3217258 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3217331 3217494 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3217562 3217695 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3217793 3218077 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3218155 3218339 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3218414 3218804 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3218884 3218930 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3218998 3219086 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3219174 3219590 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3219679 3220450 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3220718 3221277 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3223906 3224072 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild exon 3224278 3224401 . + . gene_id "RvY_01123"; transcript_id "RvY_01123.1"; Scaffold001 rebuild transcript 3228515 3229780 . + . gene_id "RvY_01124"; transcript_id "RvY_01124.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3228515 3228867 . + . gene_id "RvY_01124"; transcript_id "RvY_01124.1"; Scaffold001 rebuild exon 3229122 3229398 . + . gene_id "RvY_01124"; transcript_id "RvY_01124.1"; Scaffold001 rebuild exon 3229571 3229780 . + . gene_id "RvY_01124"; transcript_id "RvY_01124.1"; Scaffold001 rebuild transcript 3230264 3231241 . - . gene_id "RvY_01125"; transcript_id "RvY_01125.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3230264 3231241 . - . gene_id "RvY_01125"; transcript_id "RvY_01125.1"; Scaffold001 rebuild transcript 3232369 3233492 . + . gene_id "RvY_01126"; transcript_id "RvY_01126.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3232369 3232497 . + . gene_id "RvY_01126"; transcript_id "RvY_01126.1"; Scaffold001 rebuild exon 3232567 3232859 . + . gene_id "RvY_01126"; transcript_id "RvY_01126.1"; Scaffold001 rebuild exon 3233078 3233492 . + . gene_id "RvY_01126"; transcript_id "RvY_01126.1"; Scaffold001 rebuild transcript 3234320 3234481 . + . gene_id "RvY_01127"; transcript_id "RvY_01127.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3234320 3234481 . + . gene_id "RvY_01127"; transcript_id "RvY_01127.1"; Scaffold001 rebuild transcript 3234917 3236089 . + . gene_id "RvY_01128"; transcript_id "RvY_01128.1"; gene_name "GL"; annotation "Protein glass"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-met] Zinc-finger of C2H2 type|[zf-H2C2_5] C2H2-type zinc-finger domain|[zf-BED] BED zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09214"; similar_genes "GLAS_DROME(e-value:4.7e-66;bit-score:249.0)"; Scaffold001 rebuild exon 3234917 3235026 . + . gene_id "RvY_01128"; transcript_id "RvY_01128.1"; Scaffold001 rebuild exon 3235234 3236089 . + . gene_id "RvY_01128"; transcript_id "RvY_01128.1"; Scaffold001 rebuild transcript 3236398 3242375 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; gene_name "(1)SLC12A2(2)2a30"; annotation "Solute carrier family 12 member 2"; Pfam "[AA_permease] Amino acid permease"; CDD "K-Cl cotransporter."; KO "(1)K10951"; similar_genes "S12A2_HUMAN(e-value:3.3e-54;bit-score:209.0)"; Scaffold001 rebuild exon 3236398 3236581 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3236832 3237032 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3237099 3237297 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3237365 3237655 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3237739 3238039 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3238121 3238255 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3238321 3238432 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3238555 3238690 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3238762 3238881 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3238958 3239059 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3239133 3239256 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3239324 3239431 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3239500 3239727 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3239785 3240141 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3240202 3240308 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3240417 3240452 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3240762 3240854 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3241394 3241444 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3241513 3241537 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3241608 3241730 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3241813 3241871 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3241938 3242070 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild exon 3242223 3242375 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.1"; Scaffold001 rebuild transcript 3238103 3242375 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; gene_name "(1)SLC12A2(2)2a30"; annotation "Solute carrier family 12 member 2"; Pfam "[AA_permease] Amino acid permease"; CDD "K-Cl cotransporter."; KO "(1)K10951"; similar_genes "S12A2_HUMAN(e-value:3.3e-54;bit-score:209.0)"; Scaffold001 rebuild exon 3238103 3238255 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3238321 3238432 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3238555 3238690 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3238762 3238881 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3238958 3239059 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3239133 3239256 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3239324 3239431 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3239500 3239727 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3239785 3240141 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3240202 3240308 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3240417 3240452 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3240762 3240854 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3241394 3241444 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3241513 3241537 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3241608 3241730 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3241813 3241871 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3241938 3242070 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild exon 3242223 3242375 . - . gene_id "RvY_01129"; transcript_id "RvY_01129.2"; Scaffold001 rebuild transcript 3243628 3245743 . - . gene_id "RvY_01130"; transcript_id "RvY_01130.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3243628 3243918 . - . gene_id "RvY_01130"; transcript_id "RvY_01130.1"; Scaffold001 rebuild exon 3244048 3244495 . - . gene_id "RvY_01130"; transcript_id "RvY_01130.1"; Scaffold001 rebuild exon 3244593 3244784 . - . gene_id "RvY_01130"; transcript_id "RvY_01130.1"; Scaffold001 rebuild exon 3244878 3245358 . - . gene_id "RvY_01130"; transcript_id "RvY_01130.1"; Scaffold001 rebuild exon 3245482 3245743 . - . gene_id "RvY_01130"; transcript_id "RvY_01130.1"; Scaffold001 rebuild transcript 3245584 3246807 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.1"; gene_name "(1)Laps"; annotation "hypothetical protein."; Pfam "[Laps] Learning-associated protein"; CDD "(1)Learning-associated protein. This is a family of 121-amino acid secretory proteins. Laps functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment. Laps binds to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activates the transcription of ApC/EBP mRNA."; Scaffold001 rebuild exon 3245584 3245813 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.1"; Scaffold001 rebuild exon 3246107 3246357 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.1"; Scaffold001 rebuild exon 3246472 3246624 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.1"; Scaffold001 rebuild exon 3246689 3246807 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.1"; Scaffold001 rebuild transcript 3246189 3246807 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.2"; gene_name "(1)Laps"; annotation "hypothetical protein."; Pfam "[Laps] Learning-associated protein"; CDD "(1)Learning-associated protein. This is a family of 121-amino acid secretory proteins. Laps functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment. Laps binds to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activates the transcription of ApC/EBP mRNA."; Scaffold001 rebuild exon 3246189 3246351 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.2"; Scaffold001 rebuild exon 3246472 3246624 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.2"; Scaffold001 rebuild exon 3246689 3246807 . + . gene_id "RvY_01131"; transcript_id "RvY_01131.2"; Scaffold001 rebuild transcript 3251831 3254244 . + . gene_id "RvY_01132"; transcript_id "RvY_01132.1"; gene_name "POU2F"; annotation "putative Protein nubbin"; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; KO "K09364"; similar_genes "PDM1_DROME(e-value:6.3e-34;bit-score:142.0)"; Scaffold001 rebuild exon 3251831 3252388 . + . gene_id "RvY_01132"; transcript_id "RvY_01132.1"; Scaffold001 rebuild exon 3252474 3252605 . + . gene_id "RvY_01132"; transcript_id "RvY_01132.1"; Scaffold001 rebuild exon 3252841 3253441 . + . gene_id "RvY_01132"; transcript_id "RvY_01132.1"; Scaffold001 rebuild exon 3253654 3254029 . + . gene_id "RvY_01132"; transcript_id "RvY_01132.1"; Scaffold001 rebuild exon 3254091 3254244 . + . gene_id "RvY_01132"; transcript_id "RvY_01132.1"; Scaffold001 rebuild transcript 3255559 3256017 . - . gene_id "RvY_01133"; transcript_id "RvY_01133.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3255559 3255736 . - . gene_id "RvY_01133"; transcript_id "RvY_01133.1"; Scaffold001 rebuild exon 3255851 3256017 . - . gene_id "RvY_01133"; transcript_id "RvY_01133.1"; Scaffold001 rebuild transcript 3257343 3260452 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; gene_name "(1)PBP1_NPR_like(4)CYCc"; annotation "(1,2,3)hypothetical protein.(4)putative Atrial natriuretic peptide receptor 1"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|(2,3,4)[Pkinase] Protein kinase domain|(2,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3,4)EC4.6.1.2"; similar_genes "(2,3)GCY3E_DROME(e-value:2.0e-09;bit-score:60.0)(4)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold001 rebuild exon 3257343 3257543 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3257653 3257812 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3257893 3257936 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3258025 3258063 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3259045 3259122 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3259240 3259377 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3259441 3259680 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3259874 3260010 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3260089 3260181 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild exon 3260296 3260452 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.1"; Scaffold001 rebuild transcript 3260418 3261797 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.2"; gene_name "(1)PBP1_NPR_like(4)CYCc"; annotation "(1,2,3)hypothetical protein.(4)putative Atrial natriuretic peptide receptor 1"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|(2,3,4)[Pkinase] Protein kinase domain|(2,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3,4)EC4.6.1.2"; similar_genes "(2,3)GCY3E_DROME(e-value:2.0e-09;bit-score:60.0)(4)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold001 rebuild exon 3260418 3260648 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.2"; Scaffold001 rebuild exon 3260712 3260894 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.2"; Scaffold001 rebuild exon 3261006 3261239 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.2"; Scaffold001 rebuild exon 3261307 3261435 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.2"; Scaffold001 rebuild exon 3261495 3261797 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.2"; Scaffold001 rebuild transcript 3260075 3261570 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; gene_name "(1)PBP1_NPR_like(4)CYCc"; annotation "(1,2,3)hypothetical protein.(4)putative Atrial natriuretic peptide receptor 1"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|(2,3,4)[Pkinase] Protein kinase domain|(2,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3,4)EC4.6.1.2"; similar_genes "(2,3)GCY3E_DROME(e-value:2.0e-09;bit-score:60.0)(4)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold001 rebuild exon 3260075 3260181 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; Scaffold001 rebuild exon 3260296 3260404 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; Scaffold001 rebuild exon 3260475 3260648 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; Scaffold001 rebuild exon 3260712 3260894 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; Scaffold001 rebuild exon 3261006 3261239 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; Scaffold001 rebuild exon 3261307 3261570 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.3"; Scaffold001 rebuild transcript 3261087 3262214 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.4"; gene_name "(1)PBP1_NPR_like(4)CYCc"; annotation "(1,2,3)hypothetical protein.(4)putative Atrial natriuretic peptide receptor 1"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|(2,3,4)[Pkinase] Protein kinase domain|(2,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3,4)EC4.6.1.2"; similar_genes "(2,3)GCY3E_DROME(e-value:2.0e-09;bit-score:60.0)(4)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold001 rebuild exon 3261087 3261239 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.4"; Scaffold001 rebuild exon 3261307 3261435 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.4"; Scaffold001 rebuild exon 3261495 3261743 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.4"; Scaffold001 rebuild exon 3261828 3261880 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.4"; Scaffold001 rebuild exon 3261959 3262214 . + . gene_id "RvY_01134"; transcript_id "RvY_01134.4"; Scaffold001 rebuild transcript 3263440 3263601 . + . gene_id "RvY_01135"; transcript_id "RvY_01135.1"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; Scaffold001 rebuild exon 3263440 3263601 . + . gene_id "RvY_01135"; transcript_id "RvY_01135.1"; Scaffold001 rebuild transcript 3264047 3268684 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; gene_name "MAP3K5"; annotation "Mitogen-activated protein kinase kinase kinase 5"; Pfam "[Pkinase] Protein kinase domain|[DUF4071]|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/threonine kinases (STKs), apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown."; EC "EC2.7.11.25"; KO "K04426"; similar_genes "M3K5_MOUSE(e-value:9.5e-52;bit-score:201.0)"; Scaffold001 rebuild exon 3264047 3264820 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3264893 3265243 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3265347 3265706 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3266003 3266452 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3266588 3266878 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3267070 3267387 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3267458 3267776 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3267839 3268145 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3268267 3268387 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild exon 3268454 3268684 . - . gene_id "RvY_01136"; transcript_id "RvY_01136.1"; Scaffold001 rebuild transcript 3269053 3269943 . + . gene_id "RvY_01137"; transcript_id "RvY_01137.1"; annotation "hypothetical protein."; Pfam "[DUF2052] Coiled-coil domain containing protein (DUF2052)"; Scaffold001 rebuild exon 3269053 3269943 . + . gene_id "RvY_01137"; transcript_id "RvY_01137.1"; Scaffold001 rebuild transcript 3270166 3270360 . + . gene_id "RvY_01138"; transcript_id "RvY_01138.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3270166 3270360 . + . gene_id "RvY_01138"; transcript_id "RvY_01138.1"; Scaffold001 rebuild transcript 3271302 3273203 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3271302 3271424 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.1"; Scaffold001 rebuild exon 3271782 3272172 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.1"; Scaffold001 rebuild exon 3272242 3272527 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.1"; Scaffold001 rebuild exon 3272716 3272903 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.1"; Scaffold001 rebuild exon 3272965 3273203 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.1"; Scaffold001 rebuild transcript 3271302 3272531 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3271302 3271424 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.2"; Scaffold001 rebuild exon 3271782 3272172 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.2"; Scaffold001 rebuild exon 3272242 3272531 . + . gene_id "RvY_01139"; transcript_id "RvY_01139.2"; Scaffold001 rebuild transcript 3273793 3278373 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; gene_name "GABBR1"; annotation "Gamma-aminobutyric acid type B receptor subunit 1"; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example."; KO "K04615"; similar_genes "GABR1_HUMAN(e-value:1.1e-69;bit-score:261.0)"; Scaffold001 rebuild exon 3273793 3273975 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3274060 3274200 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3274770 3274898 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3274971 3275098 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3275160 3275364 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3275991 3276098 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3276158 3276290 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3276357 3276499 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3276573 3276971 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3277033 3277171 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3277261 3277481 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3277592 3277762 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3277829 3277966 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3278057 3278199 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild exon 3278283 3278373 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.1"; Scaffold001 rebuild transcript 3273672 3278134 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; gene_name "GABBR1"; annotation "Gamma-aminobutyric acid type B receptor subunit 1"; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example."; KO "K04615"; similar_genes "GABR1_HUMAN(e-value:1.1e-69;bit-score:261.0)"; Scaffold001 rebuild exon 3273672 3273706 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3273801 3273975 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3274060 3274200 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3274770 3274898 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3274971 3275098 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3275160 3275364 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3275991 3276098 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3276158 3276290 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3276357 3276499 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3276573 3276971 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3277033 3277171 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3277261 3277481 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3277592 3277762 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3277829 3277966 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild exon 3278057 3278134 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.2"; Scaffold001 rebuild transcript 3274021 3278373 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; gene_name "GABBR1"; annotation "Gamma-aminobutyric acid type B receptor subunit 1"; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example."; KO "K04615"; similar_genes "GABR1_HUMAN(e-value:1.1e-69;bit-score:261.0)"; Scaffold001 rebuild exon 3274021 3274200 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3274770 3274898 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3274971 3275098 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3275160 3275364 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3275991 3276098 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3276158 3276290 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3276357 3276499 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3276573 3276971 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3277033 3277171 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3277261 3277481 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3277592 3277762 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3277829 3277966 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3278057 3278199 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild exon 3278283 3278373 . - . gene_id "RvY_01140"; transcript_id "RvY_01140.3"; Scaffold001 rebuild transcript 3279238 3282415 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; gene_name "ZnMc_salivary_gland_MPs"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods."; Scaffold001 rebuild exon 3279238 3279519 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3279606 3279710 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3279785 3280076 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3280145 3280322 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3280401 3280560 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3280634 3280887 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3280951 3281395 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3281494 3281762 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3281854 3281917 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild exon 3282287 3282415 . - . gene_id "RvY_01141"; transcript_id "RvY_01141.1"; Scaffold001 rebuild transcript 3283261 3283497 . + . gene_id "RvY_01142"; transcript_id "RvY_01142.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3283261 3283497 . + . gene_id "RvY_01142"; transcript_id "RvY_01142.1"; Scaffold001 rebuild transcript 3285276 3290393 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; gene_name "RGS3"; annotation "regulator of G-protein signalling 3"; Pfam "[RGS] Regulator of G protein signaling domain"; KO "K07524"; similar_genes "RGS8_MOUSE(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 3285276 3285622 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; Scaffold001 rebuild exon 3286044 3286281 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; Scaffold001 rebuild exon 3287292 3287569 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; Scaffold001 rebuild exon 3288068 3288299 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; Scaffold001 rebuild exon 3288984 3289307 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; Scaffold001 rebuild exon 3290331 3290393 . - . gene_id "RvY_01143"; transcript_id "RvY_01143.1"; Scaffold001 rebuild transcript 3290356 3290580 . + . gene_id "RvY_01144"; transcript_id "RvY_01144.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3290356 3290580 . + . gene_id "RvY_01144"; transcript_id "RvY_01144.1"; Scaffold001 rebuild transcript 3291877 3292233 . - . gene_id "RvY_01145"; transcript_id "RvY_01145.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3291877 3292233 . - . gene_id "RvY_01145"; transcript_id "RvY_01145.1"; Scaffold001 rebuild transcript 3292337 3292642 . + . gene_id "RvY_01146"; transcript_id "RvY_01146.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3292337 3292642 . + . gene_id "RvY_01146"; transcript_id "RvY_01146.1"; Scaffold001 rebuild transcript 3294931 3295945 . + . gene_id "RvY_01147"; transcript_id "RvY_01147.1"; gene_name "KLF15"; annotation "putative Krueppel-like factor 15"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09210"; similar_genes "KLF15_MOUSE(e-value:1.1e-33;bit-score:141.0)"; Scaffold001 rebuild exon 3294931 3295176 . + . gene_id "RvY_01147"; transcript_id "RvY_01147.1"; Scaffold001 rebuild exon 3295481 3295945 . + . gene_id "RvY_01147"; transcript_id "RvY_01147.1"; Scaffold001 rebuild transcript 3296647 3298675 . - . gene_id "RvY_01148"; transcript_id "RvY_01148.1"; gene_name "OGG1"; annotation "N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]"; Pfam "[OGG_N] 8-oxoguanine DNA glycosylase, N-terminal domain|[HhH-GPD] HhH-GPD superfamily base excision DNA repair protein"; CDD "8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily."; EC "EC3.2.2.-|EC4.2.99.18"; KO "K03660"; similar_genes "OGG1_HUMAN(e-value:4.5e-09;bit-score:59.0)"; Scaffold001 rebuild exon 3296647 3296822 . - . gene_id "RvY_01148"; transcript_id "RvY_01148.1"; Scaffold001 rebuild exon 3297472 3297755 . - . gene_id "RvY_01148"; transcript_id "RvY_01148.1"; Scaffold001 rebuild exon 3297813 3298225 . - . gene_id "RvY_01148"; transcript_id "RvY_01148.1"; Scaffold001 rebuild exon 3298323 3298503 . - . gene_id "RvY_01148"; transcript_id "RvY_01148.1"; Scaffold001 rebuild exon 3298575 3298675 . - . gene_id "RvY_01148"; transcript_id "RvY_01148.1"; Scaffold001 rebuild transcript 3299351 3301914 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; gene_name "CCT4"; annotation "T-complex protein 1 subunit delta"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes."; KO "K09496"; similar_genes "TCPD_AEDTR(e-value:1.1e-82;bit-score:304.0)"; Scaffold001 rebuild exon 3299351 3299465 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3299524 3299666 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3299763 3299871 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3299935 3300077 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3300163 3300284 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3300417 3300555 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3300623 3300762 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3300842 3300938 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3301035 3301142 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3301209 3301339 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3301475 3301823 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild exon 3301897 3301914 . + . gene_id "RvY_01149"; transcript_id "RvY_01149.1"; Scaffold001 rebuild transcript 3302423 3303346 . - . gene_id "RvY_01150"; transcript_id "RvY_01150.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3302423 3302722 . - . gene_id "RvY_01150"; transcript_id "RvY_01150.1"; Scaffold001 rebuild exon 3302811 3302984 . - . gene_id "RvY_01150"; transcript_id "RvY_01150.1"; Scaffold001 rebuild exon 3303092 3303346 . - . gene_id "RvY_01150"; transcript_id "RvY_01150.1"; Scaffold001 rebuild transcript 3307196 3310846 . + . gene_id "RvY_01151"; transcript_id "RvY_01151.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3307196 3307289 . + . gene_id "RvY_01151"; transcript_id "RvY_01151.1"; Scaffold001 rebuild exon 3309802 3310003 . + . gene_id "RvY_01151"; transcript_id "RvY_01151.1"; Scaffold001 rebuild exon 3310083 3310141 . + . gene_id "RvY_01151"; transcript_id "RvY_01151.1"; Scaffold001 rebuild exon 3310215 3310323 . + . gene_id "RvY_01151"; transcript_id "RvY_01151.1"; Scaffold001 rebuild exon 3310399 3310846 . + . gene_id "RvY_01151"; transcript_id "RvY_01151.1"; Scaffold001 rebuild transcript 3312202 3312744 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.1"; gene_name "(1)MviM"; annotation "hypothetical protein."; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "(1)Predicted dehydrogenases and related proteins [General function prediction only]"; Scaffold001 rebuild exon 3312202 3312308 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.1"; Scaffold001 rebuild exon 3312380 3312491 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.1"; Scaffold001 rebuild exon 3312574 3312744 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.1"; Scaffold001 rebuild transcript 3312002 3312578 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.2"; gene_name "(1)MviM"; annotation "hypothetical protein."; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "(1)Predicted dehydrogenases and related proteins [General function prediction only]"; Scaffold001 rebuild exon 3312002 3312068 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.2"; Scaffold001 rebuild exon 3312145 3312308 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.2"; Scaffold001 rebuild exon 3312380 3312491 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.2"; Scaffold001 rebuild exon 3312574 3312578 . - . gene_id "RvY_01152"; transcript_id "RvY_01152.2"; Scaffold001 rebuild transcript 3313145 3314924 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 3313145 3313649 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.1"; Scaffold001 rebuild exon 3313750 3313993 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.1"; Scaffold001 rebuild exon 3314069 3314924 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.1"; Scaffold001 rebuild transcript 3313746 3314924 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 3313746 3313993 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.2"; Scaffold001 rebuild exon 3314069 3314924 . - . gene_id "RvY_01153"; transcript_id "RvY_01153.2"; Scaffold001 rebuild transcript 3315549 3318223 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; gene_name "PTZ00009"; annotation "putative Heat shock 70 kDa protein"; Pfam "[HSP70] Hsp70 protein|[MreB_Mbl] MreB/Mbl protein"; CDD "heat shock 70 kDa protein; Provisional"; similar_genes "HSP70_ONCTS(e-value:7.6e-41;bit-score:165.0)"; Scaffold001 rebuild exon 3315549 3315728 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; Scaffold001 rebuild exon 3315873 3316265 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; Scaffold001 rebuild exon 3316499 3317015 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; Scaffold001 rebuild exon 3317253 3317527 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; Scaffold001 rebuild exon 3317600 3317998 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; Scaffold001 rebuild exon 3318056 3318223 . - . gene_id "RvY_01154"; transcript_id "RvY_01154.1"; Scaffold001 rebuild transcript 3319081 3329063 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; gene_name "POLE1"; annotation "DNA polymerase epsilon catalytic subunit A"; Pfam "[DNA_pol_B] DNA polymerase family B|[DNA_pol_B_exo1] DNA polymerase family B, exonuclease domain|[DNA_pol_B_exo2] Predicted 3'-5' exonuclease related to the exonuclease domain of PolB|[DUF1744]"; CDD "DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B."; EC "EC2.7.7.7"; KO "K02324"; similar_genes "DPOE1_HUMAN(e-value:2.1e-104;bit-score:376.0)"; Scaffold001 rebuild exon 3319081 3319163 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3319217 3319355 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3319484 3319588 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3319711 3319854 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3319926 3320155 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3320223 3320361 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3320432 3320539 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3320627 3320737 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3320893 3321558 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3321709 3322048 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3322114 3322260 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3322324 3322469 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3322551 3322699 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3322773 3323362 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3324105 3324637 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3324852 3325217 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3325328 3325821 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3326043 3326547 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3326617 3326738 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3326826 3326994 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3327062 3327398 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3327519 3328023 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3328077 3328218 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3328408 3328542 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3328614 3328687 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild exon 3328754 3329063 . + . gene_id "RvY_01155"; transcript_id "RvY_01155.1"; Scaffold001 rebuild transcript 3329233 3329853 . - . gene_id "RvY_01156"; transcript_id "RvY_01156.1"; gene_name "ATPeF0F6"; annotation "F-type H+-transporting ATPase subunit 6 [EC:3.6.3.14]"; Pfam "[ATP-synt_F6] Mitochondrial ATP synthase coupling factor 6"; EC "EC3.6.3.14"; KO "K02131"; Scaffold001 rebuild exon 3329233 3329270 . - . gene_id "RvY_01156"; transcript_id "RvY_01156.1"; Scaffold001 rebuild exon 3329488 3329624 . - . gene_id "RvY_01156"; transcript_id "RvY_01156.1"; Scaffold001 rebuild exon 3329711 3329853 . - . gene_id "RvY_01156"; transcript_id "RvY_01156.1"; Scaffold001 rebuild transcript 3330398 3333678 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; gene_name "GABPA"; annotation "GA-binding protein transcription factor, alpha"; Pfam "[Ets] Ets-domain"; CDD "erythroblast transformation specific domain. variation of the helix-turn-helix motif"; KO "K09441"; similar_genes "GABPA_MOUSE(e-value:3.8e-23;bit-score:106.0)"; Scaffold001 rebuild exon 3330398 3330472 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild exon 3330554 3330762 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild exon 3331215 3331449 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild exon 3332352 3332592 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild exon 3332683 3332784 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild exon 3332858 3333116 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild exon 3333375 3333678 . + . gene_id "RvY_01157"; transcript_id "RvY_01157.1"; Scaffold001 rebuild transcript 3334734 3335039 . + . gene_id "RvY_01158"; transcript_id "RvY_01158.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3334734 3335039 . + . gene_id "RvY_01158"; transcript_id "RvY_01158.1"; Scaffold001 rebuild transcript 3335269 3336540 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; gene_name "Band_7_prohibitin"; annotation "Mitochondrial prohibitin complex protein 1"; Pfam "[Band_7] SPFH domain / Band 7 family"; CDD "Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology."; similar_genes "PHB1_CAEEL(e-value:3.7e-104;bit-score:375.0)"; Scaffold001 rebuild exon 3335269 3335481 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; Scaffold001 rebuild exon 3335552 3335647 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; Scaffold001 rebuild exon 3335745 3335861 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; Scaffold001 rebuild exon 3336010 3336152 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; Scaffold001 rebuild exon 3336222 3336383 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; Scaffold001 rebuild exon 3336444 3336540 . - . gene_id "RvY_01159"; transcript_id "RvY_01159.1"; Scaffold001 rebuild transcript 3337869 3338265 . + . gene_id "RvY_01160"; transcript_id "RvY_01160.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3337869 3337870 . + . gene_id "RvY_01160"; transcript_id "RvY_01160.1"; Scaffold001 rebuild exon 3337953 3338265 . + . gene_id "RvY_01160"; transcript_id "RvY_01160.1"; Scaffold001 rebuild transcript 3339148 3340555 . + . gene_id "RvY_01161"; transcript_id "RvY_01161.1"; annotation "Cyclin-Y-like protein 1"; Pfam "[Cyclin_N] Cyclin, N-terminal domain|[Cyclin]"; similar_genes "CCYL1_DANRE(e-value:1.1e-75;bit-score:280.0)"; Scaffold001 rebuild exon 3339148 3339541 . + . gene_id "RvY_01161"; transcript_id "RvY_01161.1"; Scaffold001 rebuild exon 3339599 3339950 . + . gene_id "RvY_01161"; transcript_id "RvY_01161.1"; Scaffold001 rebuild exon 3340012 3340224 . + . gene_id "RvY_01161"; transcript_id "RvY_01161.1"; Scaffold001 rebuild exon 3340333 3340555 . + . gene_id "RvY_01161"; transcript_id "RvY_01161.1"; Scaffold001 rebuild transcript 3341046 3342409 . - . gene_id "RvY_01162"; transcript_id "RvY_01162.1"; gene_name "IDH3"; annotation "Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial"; Pfam "[Iso_dh] Isocitrate/isopropylmalate dehydrogenase"; CDD "isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1."; EC "EC1.1.1.41"; KO "K00030"; similar_genes "IDH3B_RAT(e-value:1.9e-103;bit-score:373.0)"; Scaffold001 rebuild exon 3341046 3341312 . - . gene_id "RvY_01162"; transcript_id "RvY_01162.1"; Scaffold001 rebuild exon 3341382 3341462 . - . gene_id "RvY_01162"; transcript_id "RvY_01162.1"; Scaffold001 rebuild exon 3341530 3342141 . - . gene_id "RvY_01162"; transcript_id "RvY_01162.1"; Scaffold001 rebuild exon 3342206 3342409 . - . gene_id "RvY_01162"; transcript_id "RvY_01162.1"; Scaffold001 rebuild transcript 3343267 3349525 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; gene_name "RasGAP_RAP6"; annotation "putative GTPase-activating protein and VPS9 domain-containing protein 1"; Pfam "[VPS9] Vacuolar sorting protein 9 (VPS9) domain|[RasGAP] GTPase-activator protein for Ras-like GTPase"; CDD "Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis. RAP6 contains a Vps9 domain, which is involved in the activation of Rab5, and a Ras GAP domain (RGD). Rab5 is a small GTPase required for the control of the endocystic route, and its activity is regulated by guanine nucleotide exchange factor, such as Rabex5, and GAPs, such as RN-tre. Human Rap6 protein is localized on the plasma membrane and on the endosome. RAP6 binds to Rab5 and Ras through the Vps9 and RGD domains, respectively."; similar_genes "GAPD1_XENLA(e-value:9.6e-37;bit-score:151.0)"; Scaffold001 rebuild exon 3343267 3343572 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3343638 3344105 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3344177 3344518 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3344639 3345053 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3345296 3345686 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3345957 3346465 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3346772 3347155 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3347414 3348192 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3348261 3348355 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3348427 3348561 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3348653 3348843 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3348913 3349100 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild exon 3349169 3349525 . + . gene_id "RvY_01163"; transcript_id "RvY_01163.1"; Scaffold001 rebuild transcript 3349892 3351096 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.1"; gene_name "RP-S9e"; annotation "40S ribosomal protein S9"; Pfam "[S4]|[Ribosomal_S4] Ribosomal protein S4/S9 N-terminal domain"; CDD "40S ribosomal protein S9; Provisional"; KO "K02997"; similar_genes "RS9_DROME(e-value:2.1e-87;bit-score:319.0)"; Scaffold001 rebuild exon 3349892 3350078 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.1"; Scaffold001 rebuild exon 3350179 3350365 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.1"; Scaffold001 rebuild exon 3350473 3350708 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.1"; Scaffold001 rebuild exon 3350846 3351096 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.1"; Scaffold001 rebuild transcript 3349892 3351018 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.2"; gene_name "RP-S9e"; annotation "40S ribosomal protein S9"; Pfam "[S4]|[Ribosomal_S4] Ribosomal protein S4/S9 N-terminal domain"; CDD "40S ribosomal protein S9; Provisional"; KO "K02997"; similar_genes "RS9_DROME(e-value:2.1e-87;bit-score:319.0)"; Scaffold001 rebuild exon 3349892 3350078 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.2"; Scaffold001 rebuild exon 3350179 3350365 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.2"; Scaffold001 rebuild exon 3350473 3350708 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.2"; Scaffold001 rebuild exon 3350846 3351018 . - . gene_id "RvY_01164"; transcript_id "RvY_01164.2"; Scaffold001 rebuild transcript 3353066 3357001 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; gene_name "STAT5B"; annotation "signal transducer and activator of transcription 5B"; Pfam "[STAT_bind] STAT protein, DNA binding domain|[STAT_alpha] STAT protein, all-alpha domain|[STAT_int] STAT protein, protein interaction domain|[SH2]"; KO "K11224"; similar_genes "STA5A_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold001 rebuild exon 3353066 3353193 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3353262 3353505 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3353574 3353672 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3353740 3353934 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3354003 3354154 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3354216 3354509 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3354613 3354660 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3354750 3354837 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3354919 3354963 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3355038 3355115 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3355266 3355358 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3355675 3355970 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3356040 3356179 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3356271 3356398 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3356478 3356566 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3356647 3356763 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild exon 3356827 3357001 . + . gene_id "RvY_01165"; transcript_id "RvY_01165.1"; Scaffold001 rebuild transcript 3357825 3359221 . - . gene_id "RvY_01166"; transcript_id "RvY_01166.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3357825 3357961 . - . gene_id "RvY_01166"; transcript_id "RvY_01166.1"; Scaffold001 rebuild exon 3358536 3358607 . - . gene_id "RvY_01166"; transcript_id "RvY_01166.1"; Scaffold001 rebuild exon 3358840 3359221 . - . gene_id "RvY_01166"; transcript_id "RvY_01166.1"; Scaffold001 rebuild transcript 3362327 3362881 . + . gene_id "RvY_01167"; transcript_id "RvY_01167.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3362327 3362881 . + . gene_id "RvY_01167"; transcript_id "RvY_01167.1"; Scaffold001 rebuild transcript 3362703 3363078 . + . gene_id "RvY_01167"; transcript_id "RvY_01167.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3362703 3362813 . + . gene_id "RvY_01167"; transcript_id "RvY_01167.2"; Scaffold001 rebuild exon 3362902 3363078 . + . gene_id "RvY_01167"; transcript_id "RvY_01167.2"; Scaffold001 rebuild transcript 3363128 3363430 . - . gene_id "RvY_01168"; transcript_id "RvY_01168.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3363128 3363430 . - . gene_id "RvY_01168"; transcript_id "RvY_01168.1"; Scaffold001 rebuild transcript 3364196 3365518 . + . gene_id "RvY_01169"; transcript_id "RvY_01169.1"; gene_name "DAGAT"; annotation "hypothetical protein."; Pfam "[DAGAT] Diacylglycerol acyltransferase"; CDD "Diacylglycerol acyltransferase. The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT)."; EC "EC2.3.1.22"; KO "K14457"; similar_genes "MOGT2_MOUSE(e-value:1.5e-20;bit-score:97.0)"; Scaffold001 rebuild exon 3364196 3364452 . + . gene_id "RvY_01169"; transcript_id "RvY_01169.1"; Scaffold001 rebuild exon 3364526 3364830 . + . gene_id "RvY_01169"; transcript_id "RvY_01169.1"; Scaffold001 rebuild exon 3364920 3364985 . + . gene_id "RvY_01169"; transcript_id "RvY_01169.1"; Scaffold001 rebuild exon 3365049 3365279 . + . gene_id "RvY_01169"; transcript_id "RvY_01169.1"; Scaffold001 rebuild exon 3365361 3365518 . + . gene_id "RvY_01169"; transcript_id "RvY_01169.1"; Scaffold001 rebuild transcript 3366731 3367114 . + . gene_id "RvY_01170"; transcript_id "RvY_01170.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3366731 3367114 . + . gene_id "RvY_01170"; transcript_id "RvY_01170.1"; Scaffold001 rebuild transcript 3366288 3367187 . + . gene_id "RvY_01170"; transcript_id "RvY_01170.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3366288 3366304 . + . gene_id "RvY_01170"; transcript_id "RvY_01170.2"; Scaffold001 rebuild exon 3366853 3367110 . + . gene_id "RvY_01170"; transcript_id "RvY_01170.2"; Scaffold001 rebuild exon 3367178 3367187 . + . gene_id "RvY_01170"; transcript_id "RvY_01170.2"; Scaffold001 rebuild transcript 3366862 3366942 . - . gene_id "RvY_01171"; transcript_id "RvY_01171.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3366862 3366942 . - . gene_id "RvY_01171"; transcript_id "RvY_01171.1"; Scaffold001 rebuild transcript 3369246 3372879 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; gene_name "Peptidase_M8"; annotation "putative Leishmanolysin-like peptidase"; Pfam "[Peptidase_M8] Leishmanolysin"; CDD "Leishmanolysin."; EC "EC3.4.24.-"; KO "K13539"; similar_genes "LMLN_DROPS(e-value:3.8e-38;bit-score:156.0)"; Scaffold001 rebuild exon 3369246 3369371 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3369528 3369640 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3369796 3369826 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3369930 3370012 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3370201 3370219 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3370301 3370380 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3370453 3370713 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3370777 3370980 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3371110 3371526 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3371591 3371822 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3371898 3371967 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3372096 3372226 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3372291 3372443 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild exon 3372667 3372879 . + . gene_id "RvY_01172"; transcript_id "RvY_01172.1"; Scaffold001 rebuild transcript 3373496 3376041 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; gene_name "pncB"; annotation "Nicotinate phosphoribosyltransferase"; Pfam "[NAPRTase] Nicotinate phosphoribosyltransferase (NAPRTase) family"; CDD "nicotinate phosphoribosyltransferase; Validated"; EC "EC2.4.2.11"; KO "K00763"; similar_genes "PNCB_DROME(e-value:7.9e-81;bit-score:298.0)"; Scaffold001 rebuild exon 3373496 3373573 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3373631 3373813 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3373888 3374085 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3374172 3374337 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3374430 3374570 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3374655 3374863 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3374930 3375045 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3375135 3375265 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3375338 3375548 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3375680 3375850 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild exon 3375921 3376041 . - . gene_id "RvY_01173"; transcript_id "RvY_01173.1"; Scaffold001 rebuild transcript 3376753 3384355 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; gene_name "AMPH"; annotation "amphiphysin"; Pfam "[SH3_2] Variant SH3 domain|[BAR]|[SH3_1] SH3 domain"; CDD "BAR domain."; KO "K12562"; similar_genes "BIN1_HUMAN(e-value:1.2e-11;bit-score:68.0)"; Scaffold001 rebuild exon 3376753 3376827 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3377009 3377089 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3377174 3377228 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3377349 3377539 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3377603 3377710 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3377802 3377963 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3378056 3378159 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3378231 3378400 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3378628 3379040 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3379234 3379335 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild exon 3384269 3384355 . + . gene_id "RvY_01174"; transcript_id "RvY_01174.1"; Scaffold001 rebuild transcript 3379548 3381156 . - . gene_id "RvY_01175"; transcript_id "RvY_01175.1"; gene_name "mutarot_permut"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat."; similar_genes "KLD10_BOVIN(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 3379548 3380228 . - . gene_id "RvY_01175"; transcript_id "RvY_01175.1"; Scaffold001 rebuild exon 3380461 3380630 . - . gene_id "RvY_01175"; transcript_id "RvY_01175.1"; Scaffold001 rebuild exon 3380709 3380749 . - . gene_id "RvY_01175"; transcript_id "RvY_01175.1"; Scaffold001 rebuild exon 3380813 3381156 . - . gene_id "RvY_01175"; transcript_id "RvY_01175.1"; Scaffold001 rebuild transcript 3385619 3393331 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; annotation "Sodium leak channel non-selective protein"; Pfam "[Ion_trans] Ion transport protein"; similar_genes "NALCN_HUMAN(e-value:1.6e-70;bit-score:263.0)"; Scaffold001 rebuild exon 3385619 3385779 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3385843 3385987 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3386044 3386127 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3386198 3386343 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3386439 3386567 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3386636 3386778 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3386847 3386989 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3387070 3387633 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3387836 3387967 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3388031 3388165 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3388225 3388431 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3388618 3388898 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3389014 3389169 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3389223 3389511 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3389571 3389702 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3389774 3390150 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3390221 3390341 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3390403 3390501 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3390587 3390787 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3390860 3391054 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3391109 3391177 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3391252 3391400 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3391478 3391707 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3391777 3391892 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3391952 3391999 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3392059 3392168 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3392287 3392437 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild exon 3392798 3393331 . + . gene_id "RvY_01176"; transcript_id "RvY_01176.1"; Scaffold001 rebuild transcript 3395496 3396487 . + . gene_id "RvY_01177"; transcript_id "RvY_01177.1"; annotation "hypothetical protein."; Pfam "[TBCA] Tubulin binding cofactor A"; Scaffold001 rebuild exon 3395496 3395548 . + . gene_id "RvY_01177"; transcript_id "RvY_01177.1"; Scaffold001 rebuild exon 3395648 3395753 . + . gene_id "RvY_01177"; transcript_id "RvY_01177.1"; Scaffold001 rebuild exon 3395883 3395969 . + . gene_id "RvY_01177"; transcript_id "RvY_01177.1"; Scaffold001 rebuild exon 3396404 3396487 . + . gene_id "RvY_01177"; transcript_id "RvY_01177.1"; Scaffold001 rebuild transcript 3398563 3399435 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 3398563 3398596 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.1"; Scaffold001 rebuild exon 3398741 3398765 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.1"; Scaffold001 rebuild exon 3398876 3399296 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.1"; Scaffold001 rebuild exon 3399388 3399435 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.1"; Scaffold001 rebuild transcript 3398547 3399124 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 3398547 3398596 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.2"; Scaffold001 rebuild exon 3398741 3398765 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.2"; Scaffold001 rebuild exon 3398876 3399124 . + . gene_id "RvY_01178"; transcript_id "RvY_01178.2"; Scaffold001 rebuild transcript 3399960 3402913 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold001 rebuild exon 3399960 3400067 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3400127 3400177 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3400373 3400561 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3400631 3400851 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3400924 3401176 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3401248 3401427 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3401499 3401829 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3402034 3402265 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3402325 3402544 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3402609 3402744 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild exon 3402804 3402913 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.1"; Scaffold001 rebuild transcript 3400382 3402913 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold001 rebuild exon 3400382 3400561 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3400631 3400851 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3400924 3401176 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3401248 3401427 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3401499 3401817 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3402034 3402265 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3402325 3402544 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3402609 3402744 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild exon 3402804 3402913 . + . gene_id "RvY_01179"; transcript_id "RvY_01179.2"; Scaffold001 rebuild transcript 3403601 3405194 . - . gene_id "RvY_01180"; transcript_id "RvY_01180.1"; annotation "putative Muscle LIM protein 1"; Pfam "[LIM]"; similar_genes "MLP1_DROME(e-value:4.2e-35;bit-score:146.0)"; Scaffold001 rebuild exon 3403601 3403669 . - . gene_id "RvY_01180"; transcript_id "RvY_01180.1"; Scaffold001 rebuild exon 3403765 3403898 . - . gene_id "RvY_01180"; transcript_id "RvY_01180.1"; Scaffold001 rebuild exon 3405080 3405194 . - . gene_id "RvY_01180"; transcript_id "RvY_01180.1"; Scaffold001 rebuild transcript 3407475 3410712 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; gene_name "GTPBP1_like"; annotation "GTP-binding protein 1"; Pfam "[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU_D3] Elongation factor Tu C-terminal domain|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM."; similar_genes "GTPB1_MOUSE(e-value:1.2e-183;bit-score:639.0)"; Scaffold001 rebuild exon 3407475 3407594 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3407653 3407770 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3407895 3407954 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3408021 3408138 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3408227 3408408 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3408507 3408612 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3408679 3408739 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3408896 3409389 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3409954 3410026 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3410104 3410181 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3410262 3410319 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild exon 3410384 3410712 . + . gene_id "RvY_01181"; transcript_id "RvY_01181.1"; Scaffold001 rebuild transcript 3411541 3417270 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; annotation "hypothetical protein."; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; similar_genes "GRIK1_RAT(e-value:1.9e-16;bit-score:84.0)"; Scaffold001 rebuild exon 3411541 3411673 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3411740 3411895 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3411972 3412229 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3412286 3412464 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3412576 3412629 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3412701 3412877 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3412955 3413107 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3413194 3413295 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3413362 3413490 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3413570 3413827 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3413937 3414282 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3416087 3416185 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3416248 3416366 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3416440 3416806 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3416880 3416995 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild exon 3417070 3417270 . + . gene_id "RvY_01182"; transcript_id "RvY_01182.1"; Scaffold001 rebuild transcript 3417484 3419876 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP2K4_ONCMY(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 3417484 3417554 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild exon 3417619 3417962 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild exon 3418025 3418220 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild exon 3418290 3418649 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild exon 3418719 3418835 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild exon 3418907 3418978 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild exon 3419045 3419876 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.1"; Scaffold001 rebuild transcript 3417605 3419876 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP2K4_ONCMY(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 3417605 3417962 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; Scaffold001 rebuild exon 3418025 3418220 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; Scaffold001 rebuild exon 3418290 3418649 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; Scaffold001 rebuild exon 3418719 3418835 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; Scaffold001 rebuild exon 3418907 3418978 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; Scaffold001 rebuild exon 3419045 3419876 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.2"; Scaffold001 rebuild transcript 3417484 3419905 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP2K4_ONCMY(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 3417484 3417554 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3417619 3417962 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3418025 3418220 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3418290 3418649 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3418719 3418835 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3418907 3418978 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3419045 3419753 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild exon 3419846 3419905 . - . gene_id "RvY_01183"; transcript_id "RvY_01183.3"; Scaffold001 rebuild transcript 3420714 3423225 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold001 rebuild exon 3420714 3420775 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3420869 3421022 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3421110 3421205 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3421293 3421366 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3421458 3421540 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3421605 3421669 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3421753 3421821 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3421907 3421997 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3422068 3422207 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3422266 3422555 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3422637 3422711 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild exon 3422967 3423225 . + . gene_id "RvY_01184"; transcript_id "RvY_01184.1"; Scaffold001 rebuild transcript 3423575 3424627 . + . gene_id "RvY_01185"; transcript_id "RvY_01185.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3423575 3423707 . + . gene_id "RvY_01185"; transcript_id "RvY_01185.1"; Scaffold001 rebuild exon 3423790 3424056 . + . gene_id "RvY_01185"; transcript_id "RvY_01185.1"; Scaffold001 rebuild exon 3424147 3424460 . + . gene_id "RvY_01185"; transcript_id "RvY_01185.1"; Scaffold001 rebuild exon 3424529 3424627 . + . gene_id "RvY_01185"; transcript_id "RvY_01185.1"; Scaffold001 rebuild transcript 3425414 3426714 . + . gene_id "RvY_01186"; transcript_id "RvY_01186.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; EC "EC2.7.11.1"; similar_genes "KC11_ENCCU(e-value:2.0e-09;bit-score:60.0)"; Scaffold001 rebuild exon 3425414 3425463 . + . gene_id "RvY_01186"; transcript_id "RvY_01186.1"; Scaffold001 rebuild exon 3425573 3425869 . + . gene_id "RvY_01186"; transcript_id "RvY_01186.1"; Scaffold001 rebuild exon 3426081 3426714 . + . gene_id "RvY_01186"; transcript_id "RvY_01186.1"; Scaffold001 rebuild transcript 3428536 3436836 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; gene_name "ARHGEF11"; annotation "Rho guanine nucleotide exchange factor 11"; Pfam "[RGS-like] Regulator of G protein signalling-like domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[RhoGEF]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; KO "K12331"; similar_genes "ARHGC_HUMAN(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 3428536 3429101 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3429309 3429978 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3430047 3430234 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3430312 3430756 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3431050 3431564 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3431631 3431899 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3431967 3432524 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3432823 3433031 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3433167 3433250 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3433379 3434064 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3434827 3434884 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3434994 3435043 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3435326 3435424 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3435879 3436000 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild exon 3436760 3436836 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.1"; Scaffold001 rebuild transcript 3428536 3436109 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; gene_name "ARHGEF11"; annotation "Rho guanine nucleotide exchange factor 11"; Pfam "[RGS-like] Regulator of G protein signalling-like domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[RhoGEF]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; KO "K12331"; similar_genes "ARHGC_HUMAN(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 3428536 3429101 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3429309 3429978 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3430047 3430234 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3430312 3430756 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3431050 3431564 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3431631 3431899 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3431967 3432524 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3432823 3433031 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3433167 3433250 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3433379 3434064 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3434827 3434884 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3434994 3435043 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3435326 3435424 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3435879 3436000 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild exon 3436081 3436109 . - . gene_id "RvY_01187"; transcript_id "RvY_01187.2"; Scaffold001 rebuild transcript 3442976 3443275 . - . gene_id "RvY_01188"; transcript_id "RvY_01188.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3442976 3443083 . - . gene_id "RvY_01188"; transcript_id "RvY_01188.1"; Scaffold001 rebuild exon 3443183 3443275 . - . gene_id "RvY_01188"; transcript_id "RvY_01188.1"; Scaffold001 rebuild transcript 3443735 3444712 . - . gene_id "RvY_01189"; transcript_id "RvY_01189.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related ""chromo shadow"" domain."; Scaffold001 rebuild exon 3443735 3443900 . - . gene_id "RvY_01189"; transcript_id "RvY_01189.1"; Scaffold001 rebuild exon 3444129 3444449 . - . gene_id "RvY_01189"; transcript_id "RvY_01189.1"; Scaffold001 rebuild exon 3444537 3444712 . - . gene_id "RvY_01189"; transcript_id "RvY_01189.1"; Scaffold001 rebuild transcript 3445748 3446963 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold001 rebuild exon 3445748 3445810 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; Scaffold001 rebuild exon 3445947 3446150 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; Scaffold001 rebuild exon 3446238 3446312 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; Scaffold001 rebuild exon 3446401 3446511 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; Scaffold001 rebuild exon 3446581 3446823 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; Scaffold001 rebuild exon 3446898 3446963 . + . gene_id "RvY_01190"; transcript_id "RvY_01190.1"; Scaffold001 rebuild transcript 3447407 3449215 . - . gene_id "RvY_01191"; transcript_id "RvY_01191.1"; annotation "hypothetical protein."; Pfam "[DOMON]"; Scaffold001 rebuild exon 3447407 3447507 . - . gene_id "RvY_01191"; transcript_id "RvY_01191.1"; Scaffold001 rebuild exon 3447589 3448026 . - . gene_id "RvY_01191"; transcript_id "RvY_01191.1"; Scaffold001 rebuild exon 3448568 3448817 . - . gene_id "RvY_01191"; transcript_id "RvY_01191.1"; Scaffold001 rebuild exon 3448904 3449215 . - . gene_id "RvY_01191"; transcript_id "RvY_01191.1"; Scaffold001 rebuild transcript 3449806 3449970 . + . gene_id "RvY_01192"; transcript_id "RvY_01192.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3449806 3449970 . + . gene_id "RvY_01192"; transcript_id "RvY_01192.1"; Scaffold001 rebuild transcript 3451379 3455346 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 3451379 3451465 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; Scaffold001 rebuild exon 3451620 3452601 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; Scaffold001 rebuild exon 3452681 3454264 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; Scaffold001 rebuild exon 3454383 3454647 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; Scaffold001 rebuild exon 3454724 3454867 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; Scaffold001 rebuild exon 3454944 3455346 . + . gene_id "RvY_01193"; transcript_id "RvY_01193.1"; Scaffold001 rebuild transcript 3455777 3456751 . - . gene_id "RvY_01194"; transcript_id "RvY_01194.1"; gene_name "CLECT"; annotation "hypothetical protein."; CDD "C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules."; Scaffold001 rebuild exon 3455777 3455937 . - . gene_id "RvY_01194"; transcript_id "RvY_01194.1"; Scaffold001 rebuild exon 3456169 3456291 . - . gene_id "RvY_01194"; transcript_id "RvY_01194.1"; Scaffold001 rebuild exon 3456396 3456493 . - . gene_id "RvY_01194"; transcript_id "RvY_01194.1"; Scaffold001 rebuild exon 3456588 3456751 . - . gene_id "RvY_01194"; transcript_id "RvY_01194.1"; Scaffold001 rebuild transcript 3457812 3459552 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold001 rebuild exon 3457812 3458007 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; Scaffold001 rebuild exon 3458106 3458291 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; Scaffold001 rebuild exon 3458400 3458551 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; Scaffold001 rebuild exon 3458677 3458806 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; Scaffold001 rebuild exon 3458894 3458929 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; Scaffold001 rebuild exon 3459008 3459552 . + . gene_id "RvY_01195"; transcript_id "RvY_01195.1"; Scaffold001 rebuild transcript 3460422 3461592 . - . gene_id "RvY_01196"; transcript_id "RvY_01196.1"; annotation "hypothetical protein."; Pfam "[CRF-BP] Corticotropin-releasing factor binding protein (CRF-BP)"; Scaffold001 rebuild exon 3460422 3460681 . - . gene_id "RvY_01196"; transcript_id "RvY_01196.1"; Scaffold001 rebuild exon 3460777 3460987 . - . gene_id "RvY_01196"; transcript_id "RvY_01196.1"; Scaffold001 rebuild exon 3461090 3461256 . - . gene_id "RvY_01196"; transcript_id "RvY_01196.1"; Scaffold001 rebuild exon 3461335 3461395 . - . gene_id "RvY_01196"; transcript_id "RvY_01196.1"; Scaffold001 rebuild exon 3461503 3461592 . - . gene_id "RvY_01196"; transcript_id "RvY_01196.1"; Scaffold001 rebuild transcript 3463299 3464152 . + . gene_id "RvY_01197"; transcript_id "RvY_01197.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3463299 3463359 . + . gene_id "RvY_01197"; transcript_id "RvY_01197.1"; Scaffold001 rebuild exon 3463421 3463522 . + . gene_id "RvY_01197"; transcript_id "RvY_01197.1"; Scaffold001 rebuild exon 3463599 3464152 . + . gene_id "RvY_01197"; transcript_id "RvY_01197.1"; Scaffold001 rebuild transcript 3464988 3465783 . + . gene_id "RvY_01198"; transcript_id "RvY_01198.1"; gene_name "CLECT"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain"; CDD "C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules."; Scaffold001 rebuild exon 3464988 3465130 . + . gene_id "RvY_01198"; transcript_id "RvY_01198.1"; Scaffold001 rebuild exon 3465240 3465337 . + . gene_id "RvY_01198"; transcript_id "RvY_01198.1"; Scaffold001 rebuild exon 3465450 3465566 . + . gene_id "RvY_01198"; transcript_id "RvY_01198.1"; Scaffold001 rebuild exon 3465635 3465783 . + . gene_id "RvY_01198"; transcript_id "RvY_01198.1"; Scaffold001 rebuild transcript 3466389 3468905 . - . gene_id "RvY_01199"; transcript_id "RvY_01199.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3466389 3466569 . - . gene_id "RvY_01199"; transcript_id "RvY_01199.1"; Scaffold001 rebuild exon 3468832 3468905 . - . gene_id "RvY_01199"; transcript_id "RvY_01199.1"; Scaffold001 rebuild transcript 3468965 3469666 . + . gene_id "RvY_01200"; transcript_id "RvY_01200.1"; gene_name "EGF_CA"; annotation "hypothetical protein."; Pfam "[EGF_2] EGF-like domain|[EGF] EGF-like domain|[EGF_CA] Calcium-binding EGF domain"; CDD "Calcium-binding EGF-like domain."; similar_genes "NOTCH_XENLA(e-value:2.7e-13;bit-score:73.0)"; Scaffold001 rebuild exon 3468965 3469666 . + . gene_id "RvY_01200"; transcript_id "RvY_01200.1"; Scaffold001 rebuild transcript 3469845 3471931 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; gene_name "GH18_chitolectin_chitotriosidase"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold001 rebuild exon 3469845 3470132 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild exon 3470323 3470640 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild exon 3470712 3470808 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild exon 3470913 3471028 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild exon 3471318 3471556 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild exon 3471629 3471799 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild exon 3471871 3471931 . - . gene_id "RvY_01201"; transcript_id "RvY_01201.1"; Scaffold001 rebuild transcript 3475669 3477334 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.1"; gene_name "(1)MAK"; annotation "(1)putative Serine/threonine-protein kinase ICK(2)hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)The catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I."; EC "(1)EC2.7.11.22"; KO "(1)K08829"; similar_genes "(1)ICK_MOUSE(e-value:7.0e-48;bit-score:188.0)"; Scaffold001 rebuild exon 3475669 3475966 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.1"; Scaffold001 rebuild exon 3476301 3476433 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.1"; Scaffold001 rebuild exon 3476507 3476678 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.1"; Scaffold001 rebuild exon 3476738 3477334 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.1"; Scaffold001 rebuild transcript 3476997 3477965 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.2"; gene_name "(1)MAK"; annotation "(1)putative Serine/threonine-protein kinase ICK(2)hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)The catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I."; EC "(1)EC2.7.11.22"; KO "(1)K08829"; similar_genes "(1)ICK_MOUSE(e-value:7.0e-48;bit-score:188.0)"; Scaffold001 rebuild exon 3476997 3477965 . + . gene_id "RvY_01202"; transcript_id "RvY_01202.2"; Scaffold001 rebuild transcript 3480995 3481296 . + . gene_id "RvY_01203"; transcript_id "RvY_01203.1"; annotation "hypothetical protein."; Pfam "[GoLoco] GoLoco motif"; Scaffold001 rebuild exon 3480995 3481102 . + . gene_id "RvY_01203"; transcript_id "RvY_01203.1"; Scaffold001 rebuild exon 3481168 3481296 . + . gene_id "RvY_01203"; transcript_id "RvY_01203.1"; Scaffold001 rebuild transcript 3481888 3483079 . + . gene_id "RvY_01204"; transcript_id "RvY_01204.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold001 rebuild exon 3481888 3481991 . + . gene_id "RvY_01204"; transcript_id "RvY_01204.1"; Scaffold001 rebuild exon 3482061 3482837 . + . gene_id "RvY_01204"; transcript_id "RvY_01204.1"; Scaffold001 rebuild exon 3482920 3483079 . + . gene_id "RvY_01204"; transcript_id "RvY_01204.1"; Scaffold001 rebuild transcript 3483424 3486828 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; gene_name "MANBA"; annotation "putative Beta-mannosidase"; Pfam "[Glyco_hydro_2_N] Glycosyl hydrolases family 2, sugar binding domain"; CDD "Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]"; EC "EC3.2.1.25"; KO "K01192"; similar_genes "MANBA_CAPHI(e-value:4.1e-50;bit-score:196.0)"; Scaffold001 rebuild exon 3483424 3483660 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3483732 3484271 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3484342 3484619 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3484687 3485217 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3485423 3486101 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3486188 3486339 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3486408 3486575 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild exon 3486687 3486828 . - . gene_id "RvY_01205"; transcript_id "RvY_01205.1"; Scaffold001 rebuild transcript 3487480 3493344 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; gene_name "ATPase-Plipid"; annotation "putative Probable phospholipid-transporting ATPase C887.12"; Pfam "[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes."; EC "EC3.6.3.1"; KO "K14802"; similar_genes "YOOC_SCHPO(e-value:5.8e-41;bit-score:165.0)"; Scaffold001 rebuild exon 3487480 3487905 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3488322 3488924 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3489267 3489875 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3489987 3490299 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3490567 3490955 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3491521 3491598 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3491899 3492365 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3492428 3492469 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3492536 3493003 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild exon 3493182 3493344 . - . gene_id "RvY_01206"; transcript_id "RvY_01206.1"; Scaffold001 rebuild transcript 3494243 3494787 . - . gene_id "RvY_01207"; transcript_id "RvY_01207.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3494243 3494352 . - . gene_id "RvY_01207"; transcript_id "RvY_01207.1"; Scaffold001 rebuild exon 3494460 3494503 . - . gene_id "RvY_01207"; transcript_id "RvY_01207.1"; Scaffold001 rebuild exon 3494594 3494787 . - . gene_id "RvY_01207"; transcript_id "RvY_01207.1"; Scaffold001 rebuild transcript 3495540 3505682 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; gene_name "VPS10"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "VPS10 domain."; similar_genes "LRP2_HUMAN(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 3495540 3495788 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3495869 3496108 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3496179 3496440 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3496503 3496660 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3496753 3496857 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3496948 3497120 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3497299 3497405 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3497465 3497725 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3497789 3498088 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3498161 3498347 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3498418 3498635 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3498716 3498903 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3499130 3500013 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3500268 3500404 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3500502 3500642 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3500708 3500838 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3500908 3500934 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3501010 3501115 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3501228 3501362 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3501431 3501577 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3501663 3501751 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3501814 3502089 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3502155 3502471 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3502792 3503276 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3503969 3504439 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3504501 3504754 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3504823 3505138 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3505354 3505542 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild exon 3505612 3505682 . + . gene_id "RvY_01208"; transcript_id "RvY_01208.1"; Scaffold001 rebuild transcript 3507805 3512877 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; gene_name "S_TKc"; annotation "putative Serine/threonine-protein kinase SIK3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; similar_genes "SIK3_MOUSE(e-value:5.4e-33;bit-score:139.0)"; Scaffold001 rebuild exon 3507805 3507993 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; Scaffold001 rebuild exon 3508965 3509112 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; Scaffold001 rebuild exon 3509190 3509384 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; Scaffold001 rebuild exon 3509446 3509587 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; Scaffold001 rebuild exon 3509676 3509954 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; Scaffold001 rebuild exon 3511887 3512877 . + . gene_id "RvY_01209"; transcript_id "RvY_01209.1"; Scaffold001 rebuild transcript 3513762 3514556 . + . gene_id "RvY_01210"; transcript_id "RvY_01210.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3513762 3513828 . + . gene_id "RvY_01210"; transcript_id "RvY_01210.1"; Scaffold001 rebuild exon 3513903 3514078 . + . gene_id "RvY_01210"; transcript_id "RvY_01210.1"; Scaffold001 rebuild exon 3514159 3514322 . + . gene_id "RvY_01210"; transcript_id "RvY_01210.1"; Scaffold001 rebuild exon 3514433 3514556 . + . gene_id "RvY_01210"; transcript_id "RvY_01210.1"; Scaffold001 rebuild transcript 3515743 3530324 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; gene_name "NCAM"; annotation "neural cell adhesion molecule"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; KO "K06491"; Scaffold001 rebuild exon 3515743 3515833 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3526634 3526823 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3526910 3527187 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3527257 3527319 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3527401 3527475 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3527546 3527670 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3527775 3528181 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3528244 3528523 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3528657 3529146 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3529209 3529252 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3529329 3529491 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3529694 3529798 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3529877 3530000 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild exon 3530201 3530324 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.1"; Scaffold001 rebuild transcript 3515743 3529877 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; gene_name "NCAM"; annotation "neural cell adhesion molecule"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; KO "K06491"; Scaffold001 rebuild exon 3515743 3515833 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3526634 3526823 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3526910 3527187 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3527257 3527319 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3527401 3527475 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3527546 3527670 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3527775 3528181 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3528244 3528523 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3528657 3529146 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3529209 3529252 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3529329 3529597 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3529694 3529798 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild exon 3529877 3529877 . + . gene_id "RvY_01211"; transcript_id "RvY_01211.2"; Scaffold001 rebuild transcript 3532177 3534224 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; gene_name "K00965"; annotation "putative Probable galactose-1-phosphate uridylyltransferase"; Pfam "[GalP_UDP_tr_C] Galactose-1-phosphate uridyl transferase, C-terminal domain|[GalP_UDP_transf] Galactose-1-phosphate uridyl transferase, N-terminal domain"; CDD "galactose-1-phosphate uridylyltransferase; Provisional"; EC "EC2.7.7.12"; KO "K00965"; similar_genes "GALT_CAEEL(e-value:5.3e-48;bit-score:189.0)"; Scaffold001 rebuild exon 3532177 3532203 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3532302 3532456 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3532548 3532631 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3532712 3532844 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3532952 3533131 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3533261 3533439 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3533495 3533570 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3533642 3533832 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild exon 3534200 3534224 . - . gene_id "RvY_01212"; transcript_id "RvY_01212.1"; Scaffold001 rebuild transcript 3534985 3536040 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.1"; gene_name "(1)BRLZ"; annotation "hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; CDD "(1)basic region leucin zipper."; Scaffold001 rebuild exon 3534985 3535160 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.1"; Scaffold001 rebuild exon 3535226 3535322 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.1"; Scaffold001 rebuild exon 3535401 3535742 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.1"; Scaffold001 rebuild exon 3535873 3536040 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.1"; Scaffold001 rebuild transcript 3535727 3536261 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.2"; gene_name "(1)BRLZ"; annotation "hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; CDD "(1)basic region leucin zipper."; Scaffold001 rebuild exon 3535727 3535742 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.2"; Scaffold001 rebuild exon 3535873 3536261 . + . gene_id "RvY_01213"; transcript_id "RvY_01213.2"; Scaffold001 rebuild transcript 3536104 3537567 . - . gene_id "RvY_01214"; transcript_id "RvY_01214.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3536104 3536241 . - . gene_id "RvY_01214"; transcript_id "RvY_01214.1"; Scaffold001 rebuild exon 3536584 3537027 . - . gene_id "RvY_01214"; transcript_id "RvY_01214.1"; Scaffold001 rebuild exon 3537112 3537567 . - . gene_id "RvY_01214"; transcript_id "RvY_01214.1"; Scaffold001 rebuild transcript 3538139 3541672 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; gene_name "(1)POLQ(2)helS"; annotation "(1)DNA polymerase theta subunit [EC:2.7.7.7](2)helicase [EC:3.6.1.-]"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "ski2-like helicase; Provisional"; EC "(1)EC2.7.7.7|EC3.6.1.-(2)EC3.6.1.-"; KO "(1)K02349(2)K03726"; similar_genes "HELS_METAC(e-value:8.0e-13;bit-score:72.0)"; Scaffold001 rebuild exon 3538139 3538442 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3538524 3538767 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3538899 3539014 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3539078 3539514 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3539605 3539828 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3539889 3540198 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3540280 3540554 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3540622 3540941 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild exon 3541002 3541672 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.1"; Scaffold001 rebuild transcript 3538879 3541672 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; gene_name "(1)POLQ(2)helS"; annotation "(1)DNA polymerase theta subunit [EC:2.7.7.7](2)helicase [EC:3.6.1.-]"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "ski2-like helicase; Provisional"; EC "(1)EC2.7.7.7|EC3.6.1.-(2)EC3.6.1.-"; KO "(1)K02349(2)K03726"; similar_genes "HELS_METAC(e-value:8.0e-13;bit-score:72.0)"; Scaffold001 rebuild exon 3538879 3539014 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild exon 3539078 3539514 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild exon 3539605 3539828 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild exon 3539889 3540198 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild exon 3540280 3540554 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild exon 3540622 3540941 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild exon 3541002 3541672 . - . gene_id "RvY_01215"; transcript_id "RvY_01215.2"; Scaffold001 rebuild transcript 3543074 3545081 . - . gene_id "RvY_01216"; transcript_id "RvY_01216.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3543074 3544014 . - . gene_id "RvY_01216"; transcript_id "RvY_01216.1"; Scaffold001 rebuild exon 3544283 3545081 . - . gene_id "RvY_01216"; transcript_id "RvY_01216.1"; Scaffold001 rebuild transcript 3545780 3546049 . - . gene_id "RvY_01217"; transcript_id "RvY_01217.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3545780 3546049 . - . gene_id "RvY_01217"; transcript_id "RvY_01217.1"; Scaffold001 rebuild transcript 3546324 3555405 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 3546324 3546396 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3553376 3553574 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3553765 3553916 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3554039 3554179 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3554251 3554397 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3554483 3554782 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3554842 3555018 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild exon 3555209 3555405 . + . gene_id "RvY_01218"; transcript_id "RvY_01218.1"; Scaffold001 rebuild transcript 3556302 3561447 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; gene_name "USP2_21"; annotation "ubiquitin carboxyl-terminal hydrolase 2/21 [EC:3.1.2.15]"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; EC "EC3.1.2.15"; KO "K11833"; similar_genes "UBP2_CHICK(e-value:1.4e-14;bit-score:78.0)"; Scaffold001 rebuild exon 3556302 3556374 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3556434 3556744 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3556832 3557037 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3557163 3557341 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3557415 3557538 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3557607 3557733 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3557798 3558453 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3558575 3558835 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild exon 3560934 3561447 . - . gene_id "RvY_01219"; transcript_id "RvY_01219.1"; Scaffold001 rebuild transcript 3562600 3562998 . - . gene_id "RvY_01220"; transcript_id "RvY_01220.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3562600 3562998 . - . gene_id "RvY_01220"; transcript_id "RvY_01220.1"; Scaffold001 rebuild transcript 3563712 3566155 . - . gene_id "RvY_01221"; transcript_id "RvY_01221.1"; gene_name "PDP"; annotation "pyruvate dehydrogenase phosphatase [EC:3.1.3.43]"; Pfam "[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.43"; KO "K01102"; similar_genes "PDP2_RAT(e-value:2.2e-06;bit-score:50.0)"; Scaffold001 rebuild exon 3563712 3563780 . - . gene_id "RvY_01221"; transcript_id "RvY_01221.1"; Scaffold001 rebuild exon 3564453 3564809 . - . gene_id "RvY_01221"; transcript_id "RvY_01221.1"; Scaffold001 rebuild exon 3564868 3565175 . - . gene_id "RvY_01221"; transcript_id "RvY_01221.1"; Scaffold001 rebuild exon 3565246 3565564 . - . gene_id "RvY_01221"; transcript_id "RvY_01221.1"; Scaffold001 rebuild exon 3565745 3566155 . - . gene_id "RvY_01221"; transcript_id "RvY_01221.1"; Scaffold001 rebuild transcript 3566455 3567214 . + . gene_id "RvY_01222"; transcript_id "RvY_01222.1"; annotation "hypothetical protein."; Pfam "[Selenoprotein_S] Selenoprotein S (SelS)"; Scaffold001 rebuild exon 3566455 3566503 . + . gene_id "RvY_01222"; transcript_id "RvY_01222.1"; Scaffold001 rebuild exon 3566586 3566720 . + . gene_id "RvY_01222"; transcript_id "RvY_01222.1"; Scaffold001 rebuild exon 3566796 3566893 . + . gene_id "RvY_01222"; transcript_id "RvY_01222.1"; Scaffold001 rebuild exon 3566975 3567214 . + . gene_id "RvY_01222"; transcript_id "RvY_01222.1"; Scaffold001 rebuild transcript 3567649 3568513 . - . gene_id "RvY_01223"; transcript_id "RvY_01223.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3567649 3567747 . - . gene_id "RvY_01223"; transcript_id "RvY_01223.1"; Scaffold001 rebuild exon 3567815 3567906 . - . gene_id "RvY_01223"; transcript_id "RvY_01223.1"; Scaffold001 rebuild exon 3567973 3568152 . - . gene_id "RvY_01223"; transcript_id "RvY_01223.1"; Scaffold001 rebuild exon 3568261 3568513 . - . gene_id "RvY_01223"; transcript_id "RvY_01223.1"; Scaffold001 rebuild transcript 3569289 3571229 . + . gene_id "RvY_01224"; transcript_id "RvY_01224.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold001 rebuild exon 3569289 3569525 . + . gene_id "RvY_01224"; transcript_id "RvY_01224.1"; Scaffold001 rebuild exon 3569718 3570113 . + . gene_id "RvY_01224"; transcript_id "RvY_01224.1"; Scaffold001 rebuild exon 3570301 3570489 . + . gene_id "RvY_01224"; transcript_id "RvY_01224.1"; Scaffold001 rebuild exon 3570587 3570799 . + . gene_id "RvY_01224"; transcript_id "RvY_01224.1"; Scaffold001 rebuild exon 3570867 3571229 . + . gene_id "RvY_01224"; transcript_id "RvY_01224.1"; Scaffold001 rebuild transcript 3571828 3575506 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3571828 3571923 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3572009 3572113 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3573275 3573339 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3573406 3573724 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3573880 3574061 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3574138 3574309 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3574411 3574623 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3574743 3574928 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3575010 3575137 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild exon 3575221 3575506 . + . gene_id "RvY_01225"; transcript_id "RvY_01225.1"; Scaffold001 rebuild transcript 3575784 3577368 . - . gene_id "RvY_01226"; transcript_id "RvY_01226.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 3575784 3575986 . - . gene_id "RvY_01226"; transcript_id "RvY_01226.1"; Scaffold001 rebuild exon 3576102 3576191 . - . gene_id "RvY_01226"; transcript_id "RvY_01226.1"; Scaffold001 rebuild exon 3576276 3576410 . - . gene_id "RvY_01226"; transcript_id "RvY_01226.1"; Scaffold001 rebuild exon 3576474 3576681 . - . gene_id "RvY_01226"; transcript_id "RvY_01226.1"; Scaffold001 rebuild exon 3576814 3577368 . - . gene_id "RvY_01226"; transcript_id "RvY_01226.1"; Scaffold001 rebuild transcript 3578923 3579972 . - . gene_id "RvY_01227"; transcript_id "RvY_01227.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3578923 3579262 . - . gene_id "RvY_01227"; transcript_id "RvY_01227.1"; Scaffold001 rebuild exon 3579320 3579641 . - . gene_id "RvY_01227"; transcript_id "RvY_01227.1"; Scaffold001 rebuild exon 3579712 3579844 . - . gene_id "RvY_01227"; transcript_id "RvY_01227.1"; Scaffold001 rebuild exon 3579955 3579972 . - . gene_id "RvY_01227"; transcript_id "RvY_01227.1"; Scaffold001 rebuild transcript 3580814 3581958 . - . gene_id "RvY_01228"; transcript_id "RvY_01228.1"; gene_name "MhpC"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]"; KO "K13702"; Scaffold001 rebuild exon 3580814 3581146 . - . gene_id "RvY_01228"; transcript_id "RvY_01228.1"; Scaffold001 rebuild exon 3581331 3581586 . - . gene_id "RvY_01228"; transcript_id "RvY_01228.1"; Scaffold001 rebuild exon 3581675 3581958 . - . gene_id "RvY_01228"; transcript_id "RvY_01228.1"; Scaffold001 rebuild transcript 3582634 3583840 . + . gene_id "RvY_01229"; transcript_id "RvY_01229.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3582634 3582658 . + . gene_id "RvY_01229"; transcript_id "RvY_01229.1"; Scaffold001 rebuild exon 3583398 3583840 . + . gene_id "RvY_01229"; transcript_id "RvY_01229.1"; Scaffold001 rebuild transcript 3582435 3582680 . + . gene_id "RvY_01229"; transcript_id "RvY_01229.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3582435 3582680 . + . gene_id "RvY_01229"; transcript_id "RvY_01229.2"; Scaffold001 rebuild transcript 3584178 3585291 . + . gene_id "RvY_01230"; transcript_id "RvY_01230.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3584178 3584339 . + . gene_id "RvY_01230"; transcript_id "RvY_01230.1"; Scaffold001 rebuild exon 3584397 3584706 . + . gene_id "RvY_01230"; transcript_id "RvY_01230.1"; Scaffold001 rebuild exon 3584906 3585291 . + . gene_id "RvY_01230"; transcript_id "RvY_01230.1"; Scaffold001 rebuild transcript 3585347 3586015 . - . gene_id "RvY_01231"; transcript_id "RvY_01231.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3585347 3586015 . - . gene_id "RvY_01231"; transcript_id "RvY_01231.1"; Scaffold001 rebuild transcript 3585873 3586538 . - . gene_id "RvY_01231"; transcript_id "RvY_01231.2"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3585873 3586538 . - . gene_id "RvY_01231"; transcript_id "RvY_01231.2"; Scaffold001 rebuild transcript 3586738 3587052 . + . gene_id "RvY_01232"; transcript_id "RvY_01232.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3586738 3587052 . + . gene_id "RvY_01232"; transcript_id "RvY_01232.1"; Scaffold001 rebuild transcript 3587644 3588057 . + . gene_id "RvY_01233"; transcript_id "RvY_01233.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3587644 3588057 . + . gene_id "RvY_01233"; transcript_id "RvY_01233.1"; Scaffold001 rebuild transcript 3588710 3588976 . + . gene_id "RvY_01234"; transcript_id "RvY_01234.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3588710 3588828 . + . gene_id "RvY_01234"; transcript_id "RvY_01234.1"; Scaffold001 rebuild exon 3588946 3588976 . + . gene_id "RvY_01234"; transcript_id "RvY_01234.1"; Scaffold001 rebuild transcript 3588995 3590598 . + . gene_id "RvY_01235"; transcript_id "RvY_01235.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3588995 3589506 . + . gene_id "RvY_01235"; transcript_id "RvY_01235.1"; Scaffold001 rebuild exon 3589620 3590598 . + . gene_id "RvY_01235"; transcript_id "RvY_01235.1"; Scaffold001 rebuild transcript 3591962 3592361 . - . gene_id "RvY_01236"; transcript_id "RvY_01236.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3591962 3592003 . - . gene_id "RvY_01236"; transcript_id "RvY_01236.1"; Scaffold001 rebuild exon 3592080 3592361 . - . gene_id "RvY_01236"; transcript_id "RvY_01236.1"; Scaffold001 rebuild transcript 3593352 3593772 . + . gene_id "RvY_01237"; transcript_id "RvY_01237.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3593352 3593503 . + . gene_id "RvY_01237"; transcript_id "RvY_01237.1"; Scaffold001 rebuild exon 3593583 3593772 . + . gene_id "RvY_01237"; transcript_id "RvY_01237.1"; Scaffold001 rebuild transcript 3593883 3595272 . + . gene_id "RvY_01238"; transcript_id "RvY_01238.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3593883 3594186 . + . gene_id "RvY_01238"; transcript_id "RvY_01238.1"; Scaffold001 rebuild exon 3594273 3594699 . + . gene_id "RvY_01238"; transcript_id "RvY_01238.1"; Scaffold001 rebuild exon 3594780 3595272 . + . gene_id "RvY_01238"; transcript_id "RvY_01238.1"; Scaffold001 rebuild transcript 3599497 3599890 . - . gene_id "RvY_01239"; transcript_id "RvY_01239.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3599497 3599632 . - . gene_id "RvY_01239"; transcript_id "RvY_01239.1"; Scaffold001 rebuild exon 3599718 3599890 . - . gene_id "RvY_01239"; transcript_id "RvY_01239.1"; Scaffold001 rebuild transcript 3599947 3600483 . - . gene_id "RvY_01240"; transcript_id "RvY_01240.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3599947 3600272 . - . gene_id "RvY_01240"; transcript_id "RvY_01240.1"; Scaffold001 rebuild exon 3600366 3600483 . - . gene_id "RvY_01240"; transcript_id "RvY_01240.1"; Scaffold001 rebuild transcript 3603381 3605556 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; annotation "hypothetical protein."; Pfam "[LIM]"; Scaffold001 rebuild exon 3603381 3603449 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; Scaffold001 rebuild exon 3603551 3603722 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; Scaffold001 rebuild exon 3604113 3604219 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; Scaffold001 rebuild exon 3604354 3605007 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; Scaffold001 rebuild exon 3605143 3605379 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; Scaffold001 rebuild exon 3605452 3605556 . + . gene_id "RvY_01241"; transcript_id "RvY_01241.1"; Scaffold001 rebuild transcript 3606110 3612803 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; product "Serine/Threonine Kinase_c SIK2/Chk1?"; gene_name "K08286"; annotation "Serine/Threonine Kinase_c SIK2/Chk1? | Serine/threonine-protein kinase SIK2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.-|EC2.7.11.1"; KO "K08286"; similar_genes "SIK2_HUMAN(e-value:6.0e-115;bit-score:411.0)"; Scaffold001 rebuild exon 3606110 3606532 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3606732 3606890 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3607333 3607878 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3607990 3608412 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3608584 3608922 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3609215 3609339 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3609791 3609836 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3610445 3610560 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3611855 3611918 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3612329 3612422 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3612492 3612514 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild exon 3612675 3612803 . - . gene_id "RvY_01242"; transcript_id "RvY_01242.1"; Scaffold001 rebuild transcript 3612805 3614055 . + . gene_id "RvY_01243"; transcript_id "RvY_01243.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3612805 3612887 . + . gene_id "RvY_01243"; transcript_id "RvY_01243.1"; Scaffold001 rebuild exon 3613986 3614055 . + . gene_id "RvY_01243"; transcript_id "RvY_01243.1"; Scaffold001 rebuild transcript 3617351 3621706 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; gene_name "ABCG1"; annotation "ATP-binding cassette sub-family G member 4"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC2_membrane] ABC-2 type transporter|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; KO "K05679"; similar_genes "ABCG4_HUMAN(e-value:6.0e-64;bit-score:241.0)"; Scaffold001 rebuild exon 3617351 3617725 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3617799 3617954 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3618026 3618126 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3618215 3618383 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3618449 3618897 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3618982 3619096 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3619232 3619355 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3619469 3619614 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3619676 3619865 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3619969 3620086 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild exon 3621406 3621706 . - . gene_id "RvY_01244"; transcript_id "RvY_01244.1"; Scaffold001 rebuild transcript 3624514 3625853 . - . gene_id "RvY_01245"; transcript_id "RvY_01245.1"; annotation "putative B-cell lymphoma/leukemia 11A"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "BC11A_HUMAN(e-value:1.6e-30;bit-score:130.0)"; Scaffold001 rebuild exon 3624514 3624902 . - . gene_id "RvY_01245"; transcript_id "RvY_01245.1"; Scaffold001 rebuild exon 3625094 3625853 . - . gene_id "RvY_01245"; transcript_id "RvY_01245.1"; Scaffold001 rebuild transcript 3626388 3627956 . + . gene_id "RvY_01246"; transcript_id "RvY_01246.1"; gene_name "PIGV"; annotation "phosphatidylinositol glycan, class V [EC:2.4.1.-]"; Pfam "[Mannosyl_trans2] Mannosyltransferase (PIG-V))"; CDD "Mannosyltransferase (PIG-V)). This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI."; EC "EC2.4.1.-"; KO "K07542"; similar_genes "PIGV_HUMAN(e-value:1.5e-09;bit-score:61.0)"; Scaffold001 rebuild exon 3626388 3626447 . + . gene_id "RvY_01246"; transcript_id "RvY_01246.1"; Scaffold001 rebuild exon 3626522 3627670 . + . gene_id "RvY_01246"; transcript_id "RvY_01246.1"; Scaffold001 rebuild exon 3627738 3627956 . + . gene_id "RvY_01246"; transcript_id "RvY_01246.1"; Scaffold001 rebuild transcript 3628147 3630198 . - . gene_id "RvY_01247"; transcript_id "RvY_01247.1"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold001 rebuild exon 3628147 3630198 . - . gene_id "RvY_01247"; transcript_id "RvY_01247.1"; Scaffold001 rebuild transcript 3630483 3632950 . - . gene_id "RvY_01248"; transcript_id "RvY_01248.1"; annotation "hypothetical protein."; Pfam "[Helicase_C_2] Helicase C-terminal domain"; Scaffold001 rebuild exon 3630483 3630953 . - . gene_id "RvY_01248"; transcript_id "RvY_01248.1"; Scaffold001 rebuild exon 3631109 3631750 . - . gene_id "RvY_01248"; transcript_id "RvY_01248.1"; Scaffold001 rebuild exon 3631947 3632411 . - . gene_id "RvY_01248"; transcript_id "RvY_01248.1"; Scaffold001 rebuild exon 3632477 3632950 . - . gene_id "RvY_01248"; transcript_id "RvY_01248.1"; Scaffold001 rebuild transcript 3633048 3633533 . - . gene_id "RvY_01249"; transcript_id "RvY_01249.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3633048 3633533 . - . gene_id "RvY_01249"; transcript_id "RvY_01249.1"; Scaffold001 rebuild transcript 3634028 3635529 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.1"; annotation "hypothetical protein."; Pfam "[LRAT] Lecithin retinol acyltransferase"; Scaffold001 rebuild exon 3634028 3634100 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.1"; Scaffold001 rebuild exon 3634179 3634550 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.1"; Scaffold001 rebuild exon 3634612 3634935 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.1"; Scaffold001 rebuild exon 3635255 3635529 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.1"; Scaffold001 rebuild transcript 3634028 3635529 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.2"; annotation "hypothetical protein."; Pfam "[LRAT] Lecithin retinol acyltransferase"; Scaffold001 rebuild exon 3634028 3634100 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.2"; Scaffold001 rebuild exon 3634209 3634550 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.2"; Scaffold001 rebuild exon 3634612 3634935 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.2"; Scaffold001 rebuild exon 3635255 3635529 . + . gene_id "RvY_01250"; transcript_id "RvY_01250.2"; Scaffold001 rebuild transcript 3636763 3637917 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3636763 3636959 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; Scaffold001 rebuild exon 3637032 3637134 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; Scaffold001 rebuild exon 3637258 3637379 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; Scaffold001 rebuild exon 3637499 3637562 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; Scaffold001 rebuild exon 3637634 3637677 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; Scaffold001 rebuild exon 3637755 3637917 . + . gene_id "RvY_01251"; transcript_id "RvY_01251.1"; Scaffold001 rebuild transcript 3637719 3637958 . - . gene_id "RvY_01252"; transcript_id "RvY_01252.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3637719 3637958 . - . gene_id "RvY_01252"; transcript_id "RvY_01252.1"; Scaffold001 rebuild transcript 3638972 3645924 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; gene_name "(3)IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(3)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold001 rebuild exon 3638972 3639111 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3639450 3639737 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3639826 3639879 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3639996 3640035 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3640142 3640320 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3640413 3640473 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3640841 3640993 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3641102 3641217 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild exon 3645870 3645924 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.1"; Scaffold001 rebuild transcript 3639203 3645924 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; gene_name "(3)IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(3)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold001 rebuild exon 3639203 3639330 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3639450 3639737 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3639826 3639879 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3639996 3640035 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3640142 3640320 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3640413 3640473 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3640841 3640993 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3641102 3641217 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild exon 3645870 3645924 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.2"; Scaffold001 rebuild transcript 3639979 3645924 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; gene_name "(3)IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(3)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold001 rebuild exon 3639979 3640035 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; Scaffold001 rebuild exon 3640142 3640320 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; Scaffold001 rebuild exon 3640413 3640473 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; Scaffold001 rebuild exon 3640841 3640993 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; Scaffold001 rebuild exon 3641102 3641217 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; Scaffold001 rebuild exon 3645870 3645924 . - . gene_id "RvY_01253"; transcript_id "RvY_01253.3"; Scaffold001 rebuild transcript 3648146 3648417 . + . gene_id "RvY_01254"; transcript_id "RvY_01254.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3648146 3648229 . + . gene_id "RvY_01254"; transcript_id "RvY_01254.1"; Scaffold001 rebuild exon 3648304 3648417 . + . gene_id "RvY_01254"; transcript_id "RvY_01254.1"; Scaffold001 rebuild transcript 3650497 3654084 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; gene_name "RHD-n_TonEBP"; annotation "hypothetical protein."; Pfam "[RHD] Rel homology domain (RHD)"; CDD "N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt."; Scaffold001 rebuild exon 3650497 3650857 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3650937 3650973 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3651493 3651658 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3652007 3652206 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3652281 3652501 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3652746 3652883 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3652994 3653809 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild exon 3654008 3654084 . + . gene_id "RvY_01255"; transcript_id "RvY_01255.1"; Scaffold001 rebuild transcript 3655683 3655871 . - . gene_id "RvY_01256"; transcript_id "RvY_01256.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3655683 3655871 . - . gene_id "RvY_01256"; transcript_id "RvY_01256.1"; Scaffold001 rebuild transcript 3656421 3657055 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3656421 3656764 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.1"; Scaffold001 rebuild exon 3656835 3656869 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.1"; Scaffold001 rebuild exon 3656937 3657055 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.1"; Scaffold001 rebuild transcript 3656421 3657149 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3656421 3656764 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.2"; Scaffold001 rebuild exon 3656835 3656869 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.2"; Scaffold001 rebuild exon 3656937 3657004 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.2"; Scaffold001 rebuild exon 3657102 3657149 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.2"; Scaffold001 rebuild transcript 3656421 3656943 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3656421 3656764 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.3"; Scaffold001 rebuild exon 3656835 3656943 . + . gene_id "RvY_01257"; transcript_id "RvY_01257.3"; Scaffold001 rebuild transcript 3657542 3660338 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2)[C1-set] Immunoglobulin C1-set domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 3657542 3657693 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3657923 3658098 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3658164 3658334 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3658617 3658778 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3658875 3659219 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3659287 3659559 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3659635 3659774 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild exon 3660039 3660338 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.1"; Scaffold001 rebuild transcript 3657443 3659816 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2)[C1-set] Immunoglobulin C1-set domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 3657443 3657693 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild exon 3657923 3658098 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild exon 3658164 3658334 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild exon 3658617 3658778 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild exon 3658875 3659219 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild exon 3659287 3659559 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild exon 3659635 3659816 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.2"; Scaffold001 rebuild transcript 3657542 3659290 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.3"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2)[C1-set] Immunoglobulin C1-set domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 3657542 3657693 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.3"; Scaffold001 rebuild exon 3657923 3658098 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.3"; Scaffold001 rebuild exon 3658164 3658334 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.3"; Scaffold001 rebuild exon 3658617 3658778 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.3"; Scaffold001 rebuild exon 3658875 3659290 . + . gene_id "RvY_01258"; transcript_id "RvY_01258.3"; Scaffold001 rebuild transcript 3660629 3661367 . + . gene_id "RvY_01259"; transcript_id "RvY_01259.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3660629 3660737 . + . gene_id "RvY_01259"; transcript_id "RvY_01259.1"; Scaffold001 rebuild exon 3660802 3661367 . + . gene_id "RvY_01259"; transcript_id "RvY_01259.1"; Scaffold001 rebuild transcript 3661650 3662885 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3661650 3662482 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.1"; Scaffold001 rebuild exon 3662593 3662712 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.1"; Scaffold001 rebuild exon 3662804 3662885 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.1"; Scaffold001 rebuild transcript 3661714 3662885 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3661714 3661724 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.2"; Scaffold001 rebuild exon 3661898 3662482 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.2"; Scaffold001 rebuild exon 3662593 3662712 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.2"; Scaffold001 rebuild exon 3662804 3662885 . - . gene_id "RvY_01260"; transcript_id "RvY_01260.2"; Scaffold001 rebuild transcript 3663543 3664782 . + . gene_id "RvY_01261"; transcript_id "RvY_01261.1"; gene_name "PP2Ac"; annotation "hypothetical protein."; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "PP12_SCHPO(e-value:7.4e-20;bit-score:95.0)"; Scaffold001 rebuild exon 3663543 3664019 . + . gene_id "RvY_01261"; transcript_id "RvY_01261.1"; Scaffold001 rebuild exon 3664237 3664782 . + . gene_id "RvY_01261"; transcript_id "RvY_01261.1"; Scaffold001 rebuild transcript 3665413 3667398 . + . gene_id "RvY_01262"; transcript_id "RvY_01262.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3665413 3666559 . + . gene_id "RvY_01262"; transcript_id "RvY_01262.1"; Scaffold001 rebuild exon 3666641 3667398 . + . gene_id "RvY_01262"; transcript_id "RvY_01262.1"; Scaffold001 rebuild transcript 3667511 3668832 . - . gene_id "RvY_01263"; transcript_id "RvY_01263.1"; gene_name "RPC5"; annotation "DNA-directed RNA Polymerase III subunit C5 [EC:2.7.7.6]"; Pfam "[RNA_pol_L] RNA polymerase Rpb3/Rpb11 dimerisation domain|[RNA_pol_A_bac] RNA polymerase Rpb3/RpoA insert domain"; CDD "AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subunit heterodimerizes with the RPB11 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC40 to RPB3 suggests a similar function. The AC40 subunit is likely to associate with the RPB11 counterpart, AC19, to form a heterodimer, which stabilizes the association of the two largest subunits of RNAP I and RNAP III."; EC "EC2.7.7.6"; KO "K03027"; similar_genes "RPAC1_HUMAN(e-value:5.9e-09;bit-score:59.0)"; Scaffold001 rebuild exon 3667511 3667785 . - . gene_id "RvY_01263"; transcript_id "RvY_01263.1"; Scaffold001 rebuild exon 3667852 3668134 . - . gene_id "RvY_01263"; transcript_id "RvY_01263.1"; Scaffold001 rebuild exon 3668238 3668510 . - . gene_id "RvY_01263"; transcript_id "RvY_01263.1"; Scaffold001 rebuild exon 3668584 3668832 . - . gene_id "RvY_01263"; transcript_id "RvY_01263.1"; Scaffold001 rebuild transcript 3669184 3671740 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; annotation "hypothetical protein."; Pfam "[DUF4206]"; similar_genes "K0226_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold001 rebuild exon 3669184 3669242 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3669352 3669508 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3669606 3670038 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3670101 3670613 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3670673 3670923 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3670999 3671288 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3671360 3671464 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild exon 3671542 3671740 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.1"; Scaffold001 rebuild transcript 3669184 3671292 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; annotation "hypothetical protein."; Pfam "[DUF4206]"; similar_genes "K0226_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold001 rebuild exon 3669184 3669242 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; Scaffold001 rebuild exon 3669352 3669508 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; Scaffold001 rebuild exon 3669606 3670038 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; Scaffold001 rebuild exon 3670101 3670613 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; Scaffold001 rebuild exon 3670673 3670923 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; Scaffold001 rebuild exon 3670999 3671292 . + . gene_id "RvY_01264"; transcript_id "RvY_01264.2"; Scaffold001 rebuild transcript 3672638 3674613 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; gene_name "(1)fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "(1,2)EC1.1.1.184"; similar_genes "(1,2)CBR1_RAT(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 3672638 3672667 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild exon 3672727 3672808 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild exon 3672882 3673060 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild exon 3673146 3673282 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild exon 3673389 3673514 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild exon 3674196 3674340 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild exon 3674425 3674613 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.1"; Scaffold001 rebuild transcript 3672638 3673518 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.2"; gene_name "(1)fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "(1,2)EC1.1.1.184"; similar_genes "(1,2)CBR1_RAT(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 3672638 3672667 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.2"; Scaffold001 rebuild exon 3672727 3672808 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.2"; Scaffold001 rebuild exon 3672882 3673060 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.2"; Scaffold001 rebuild exon 3673146 3673282 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.2"; Scaffold001 rebuild exon 3673389 3673518 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.2"; Scaffold001 rebuild transcript 3672138 3672891 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.3"; gene_name "(1)fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "(1,2)EC1.1.1.184"; similar_genes "(1,2)CBR1_RAT(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 3672138 3672385 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.3"; Scaffold001 rebuild exon 3672516 3672667 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.3"; Scaffold001 rebuild exon 3672727 3672808 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.3"; Scaffold001 rebuild exon 3672882 3672891 . + . gene_id "RvY_01265"; transcript_id "RvY_01265.3"; Scaffold001 rebuild transcript 3676545 3676946 . + . gene_id "RvY_01266"; transcript_id "RvY_01266.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3676545 3676946 . + . gene_id "RvY_01266"; transcript_id "RvY_01266.1"; Scaffold001 rebuild transcript 3677105 3681104 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; annotation "hypothetical protein."; Pfam "[DUF4371]|[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 3677105 3677220 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3677661 3677926 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3678000 3678269 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3678349 3678872 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3678941 3679085 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3679233 3680119 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3680308 3680438 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3680718 3680845 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild exon 3680905 3681104 . + . gene_id "RvY_01267"; transcript_id "RvY_01267.1"; Scaffold001 rebuild transcript 3681938 3684108 . + . gene_id "RvY_01268"; transcript_id "RvY_01268.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3681938 3681977 . + . gene_id "RvY_01268"; transcript_id "RvY_01268.1"; Scaffold001 rebuild exon 3683786 3684108 . + . gene_id "RvY_01268"; transcript_id "RvY_01268.1"; Scaffold001 rebuild transcript 3685376 3686785 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; gene_name "FabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.184"; similar_genes "CBR1_RAT(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 3685376 3685411 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild exon 3685491 3685572 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild exon 3685736 3685914 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild exon 3685991 3686130 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild exon 3686190 3686315 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild exon 3686381 3686525 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild exon 3686600 3686785 . + . gene_id "RvY_01269"; transcript_id "RvY_01269.1"; Scaffold001 rebuild transcript 3686970 3688649 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; gene_name "TM7SF2"; annotation "delta14-sterol reductase [EC:1.3.1.70]"; Pfam "[ERG4_ERG24] Ergosterol biosynthesis ERG4/ERG24 family|[DUF1295]"; CDD "Ergosterol biosynthesis ERG4/ERG24 family."; EC "EC1.3.1.70"; KO "K00222"; similar_genes "LBR_CHICK(e-value:4.2e-16;bit-score:83.0)"; Scaffold001 rebuild exon 3686970 3687256 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild exon 3687329 3687578 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild exon 3687651 3687770 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild exon 3687829 3687932 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild exon 3687998 3688195 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild exon 3688268 3688454 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild exon 3688530 3688649 . - . gene_id "RvY_01270"; transcript_id "RvY_01270.1"; Scaffold001 rebuild transcript 3689390 3690970 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; gene_name "DUF914"; annotation "hypothetical protein."; Pfam "[UAA] UAA transporter family|[DUF914] Eukaryotic protein of unknown function (DUF914)|[EamA] EamA-like transporter family"; CDD "Eukaryotic protein of unknown function (DUF914). This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins."; KO "K15287"; similar_genes "S35F1_MOUSE(e-value:1.1e-14;bit-score:78.0)"; Scaffold001 rebuild exon 3689390 3689484 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild exon 3689584 3689690 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild exon 3689753 3690109 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild exon 3690176 3690332 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild exon 3690409 3690464 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild exon 3690530 3690684 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild exon 3690782 3690970 . + . gene_id "RvY_01271"; transcript_id "RvY_01271.1"; Scaffold001 rebuild transcript 3691344 3695944 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; annotation "hypothetical protein."; Pfam "[Cna_B] Cna protein B-type domain|[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|[DUF2012]|[Cna_B_2] Cna protein B-type domain"; similar_genes "NOMO3_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold001 rebuild exon 3691344 3691859 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3691939 3692139 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3692198 3692516 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3692604 3692795 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3692898 3693048 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3693162 3693340 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3693424 3694754 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3694892 3695120 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3695220 3695424 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3695513 3695651 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild exon 3695795 3695944 . - . gene_id "RvY_01272"; transcript_id "RvY_01272.1"; Scaffold001 rebuild transcript 3696365 3696884 . + . gene_id "RvY_01273"; transcript_id "RvY_01273.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3696365 3696494 . + . gene_id "RvY_01273"; transcript_id "RvY_01273.1"; Scaffold001 rebuild exon 3696868 3696884 . + . gene_id "RvY_01273"; transcript_id "RvY_01273.1"; Scaffold001 rebuild transcript 3697306 3703401 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; annotation "hypothetical protein."; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit"; similar_genes "SLO_DROME(e-value:1.8e-12;bit-score:70.0)"; Scaffold001 rebuild exon 3697306 3697385 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3697446 3697698 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3697783 3697872 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3697949 3698110 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3698172 3698283 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3698390 3698541 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3698623 3698811 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3699026 3699117 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3699229 3699292 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3699363 3699412 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3699475 3699664 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3699796 3699940 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3700030 3700326 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3700402 3700524 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3700612 3700836 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3700906 3700952 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3701615 3701839 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3701922 3702243 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3702314 3702437 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3702518 3702719 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild exon 3702787 3703401 . + . gene_id "RvY_01274"; transcript_id "RvY_01274.1"; Scaffold001 rebuild transcript 3703797 3718517 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|[C1-set] Immunoglobulin C1-set domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 3703797 3703954 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3704017 3704190 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3704255 3704768 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3704912 3705597 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3705665 3705831 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3705989 3706451 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3706610 3707191 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3707322 3707627 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3707920 3708315 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild exon 3718463 3718517 . - . gene_id "RvY_01275"; transcript_id "RvY_01275.1"; Scaffold001 rebuild transcript 3710720 3711570 . + . gene_id "RvY_01276"; transcript_id "RvY_01276.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3710720 3710867 . + . gene_id "RvY_01276"; transcript_id "RvY_01276.1"; Scaffold001 rebuild exon 3711296 3711570 . + . gene_id "RvY_01276"; transcript_id "RvY_01276.1"; Scaffold001 rebuild transcript 3727414 3728500 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.1"; annotation "hypothetical protein."; similar_genes "K1C9_CANFA(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 3727414 3728004 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.1"; Scaffold001 rebuild exon 3728165 3728500 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.1"; Scaffold001 rebuild transcript 3727414 3728500 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.2"; annotation "hypothetical protein."; similar_genes "K1C9_CANFA(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 3727414 3727456 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.2"; Scaffold001 rebuild exon 3727529 3728004 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.2"; Scaffold001 rebuild exon 3728165 3728500 . + . gene_id "RvY_01277"; transcript_id "RvY_01277.2"; Scaffold001 rebuild transcript 3729250 3729959 . + . gene_id "RvY_01278"; transcript_id "RvY_01278.1"; gene_name "RP-S17e"; annotation "putative 40S ribosomal protein S17"; Pfam "[Ribosomal_S17e] Ribosomal S17"; KO "K02962"; similar_genes "RS17_CHICK(e-value:6.6e-40;bit-score:162.0)"; Scaffold001 rebuild exon 3729250 3729252 . + . gene_id "RvY_01278"; transcript_id "RvY_01278.1"; Scaffold001 rebuild exon 3729333 3729484 . + . gene_id "RvY_01278"; transcript_id "RvY_01278.1"; Scaffold001 rebuild exon 3729596 3729959 . + . gene_id "RvY_01278"; transcript_id "RvY_01278.1"; Scaffold001 rebuild transcript 3730629 3730892 . + . gene_id "RvY_01279"; transcript_id "RvY_01279.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3730629 3730892 . + . gene_id "RvY_01279"; transcript_id "RvY_01279.1"; Scaffold001 rebuild transcript 3731181 3731360 . + . gene_id "RvY_01280"; transcript_id "RvY_01280.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3731181 3731360 . + . gene_id "RvY_01280"; transcript_id "RvY_01280.1"; Scaffold001 rebuild transcript 3732124 3733133 . + . gene_id "RvY_01281"; transcript_id "RvY_01281.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3732124 3732191 . + . gene_id "RvY_01281"; transcript_id "RvY_01281.1"; Scaffold001 rebuild exon 3732722 3733133 . + . gene_id "RvY_01281"; transcript_id "RvY_01281.1"; Scaffold001 rebuild transcript 3733501 3734745 . + . gene_id "RvY_01282"; transcript_id "RvY_01282.1"; gene_name "TMPRSS3"; annotation "transmembrane protease, serine 3 [EC:3.4.21.-]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 3733501 3733579 . + . gene_id "RvY_01282"; transcript_id "RvY_01282.1"; Scaffold001 rebuild exon 3733675 3733843 . + . gene_id "RvY_01282"; transcript_id "RvY_01282.1"; Scaffold001 rebuild exon 3733921 3734198 . + . gene_id "RvY_01282"; transcript_id "RvY_01282.1"; Scaffold001 rebuild exon 3734287 3734517 . + . gene_id "RvY_01282"; transcript_id "RvY_01282.1"; Scaffold001 rebuild exon 3734648 3734745 . + . gene_id "RvY_01282"; transcript_id "RvY_01282.1"; Scaffold001 rebuild transcript 3735269 3735532 . + . gene_id "RvY_01283"; transcript_id "RvY_01283.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3735269 3735532 . + . gene_id "RvY_01283"; transcript_id "RvY_01283.1"; Scaffold001 rebuild transcript 3735672 3736922 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; gene_name "(1)K03439"; annotation "tRNA (guanine-N(7)-)-methyltransferase"; Pfam "[Methyltransf_4] Putative methyltransferase"; EC "EC2.1.1.33"; KO "(1)K03439"; similar_genes "(1)TRMB_CAEBR(e-value:6.3e-70;bit-score:261.0)(2)TRMB_BRUMA(e-value:4.5e-60;bit-score:229.0)"; Scaffold001 rebuild exon 3735672 3735794 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; Scaffold001 rebuild exon 3735855 3735956 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; Scaffold001 rebuild exon 3736035 3736148 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; Scaffold001 rebuild exon 3736236 3736420 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; Scaffold001 rebuild exon 3736535 3736644 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; Scaffold001 rebuild exon 3736813 3736922 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.1"; Scaffold001 rebuild transcript 3735672 3736564 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.2"; gene_name "(1)K03439"; annotation "tRNA (guanine-N(7)-)-methyltransferase"; Pfam "[Methyltransf_4] Putative methyltransferase"; EC "EC2.1.1.33"; KO "(1)K03439"; similar_genes "(1)TRMB_CAEBR(e-value:6.3e-70;bit-score:261.0)(2)TRMB_BRUMA(e-value:4.5e-60;bit-score:229.0)"; Scaffold001 rebuild exon 3735672 3735794 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.2"; Scaffold001 rebuild exon 3735855 3735956 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.2"; Scaffold001 rebuild exon 3736035 3736148 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.2"; Scaffold001 rebuild exon 3736236 3736420 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.2"; Scaffold001 rebuild exon 3736552 3736564 . - . gene_id "RvY_01284"; transcript_id "RvY_01284.2"; Scaffold001 rebuild transcript 3737530 3738793 . + . gene_id "RvY_01285"; transcript_id "RvY_01285.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold001 rebuild exon 3737530 3737762 . + . gene_id "RvY_01285"; transcript_id "RvY_01285.1"; Scaffold001 rebuild exon 3737821 3738594 . + . gene_id "RvY_01285"; transcript_id "RvY_01285.1"; Scaffold001 rebuild exon 3738679 3738793 . + . gene_id "RvY_01285"; transcript_id "RvY_01285.1"; Scaffold001 rebuild transcript 3739377 3740475 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; Scaffold001 rebuild exon 3739377 3739518 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; Scaffold001 rebuild exon 3739600 3739652 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; Scaffold001 rebuild exon 3739744 3739857 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; Scaffold001 rebuild exon 3739945 3740077 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; Scaffold001 rebuild exon 3740154 3740251 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; Scaffold001 rebuild exon 3740308 3740475 . + . gene_id "RvY_01286"; transcript_id "RvY_01286.1"; Scaffold001 rebuild transcript 3740562 3740921 . - . gene_id "RvY_01287"; transcript_id "RvY_01287.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3740562 3740764 . - . gene_id "RvY_01287"; transcript_id "RvY_01287.1"; Scaffold001 rebuild exon 3740867 3740921 . - . gene_id "RvY_01287"; transcript_id "RvY_01287.1"; Scaffold001 rebuild transcript 3741256 3743263 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; Scaffold001 rebuild exon 3741256 3741448 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.1"; Scaffold001 rebuild exon 3741669 3742180 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.1"; Scaffold001 rebuild exon 3742781 3743263 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.1"; Scaffold001 rebuild transcript 3742808 3744432 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.2"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; Scaffold001 rebuild exon 3742808 3743259 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.2"; Scaffold001 rebuild exon 3743703 3744432 . + . gene_id "RvY_01288"; transcript_id "RvY_01288.2"; Scaffold001 rebuild transcript 3744943 3745554 . - . gene_id "RvY_01289"; transcript_id "RvY_01289.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3744943 3745186 . - . gene_id "RvY_01289"; transcript_id "RvY_01289.1"; Scaffold001 rebuild exon 3745242 3745355 . - . gene_id "RvY_01289"; transcript_id "RvY_01289.1"; Scaffold001 rebuild exon 3745544 3745554 . - . gene_id "RvY_01289"; transcript_id "RvY_01289.1"; Scaffold001 rebuild transcript 3747701 3748252 . + . gene_id "RvY_01290"; transcript_id "RvY_01290.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3747701 3748252 . + . gene_id "RvY_01290"; transcript_id "RvY_01290.1"; Scaffold001 rebuild transcript 3749567 3750638 . + . gene_id "RvY_01291"; transcript_id "RvY_01291.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3749567 3749873 . + . gene_id "RvY_01291"; transcript_id "RvY_01291.1"; Scaffold001 rebuild exon 3750076 3750638 . + . gene_id "RvY_01291"; transcript_id "RvY_01291.1"; Scaffold001 rebuild transcript 3750768 3753327 . + . gene_id "RvY_01292"; transcript_id "RvY_01292.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3750768 3750782 . + . gene_id "RvY_01292"; transcript_id "RvY_01292.1"; Scaffold001 rebuild exon 3752198 3752263 . + . gene_id "RvY_01292"; transcript_id "RvY_01292.1"; Scaffold001 rebuild exon 3753238 3753327 . + . gene_id "RvY_01292"; transcript_id "RvY_01292.1"; Scaffold001 rebuild transcript 3754199 3754549 . - . gene_id "RvY_01293"; transcript_id "RvY_01293.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3754199 3754549 . - . gene_id "RvY_01293"; transcript_id "RvY_01293.1"; Scaffold001 rebuild transcript 3756690 3757779 . - . gene_id "RvY_01294"; transcript_id "RvY_01294.1"; annotation "hypothetical protein."; Pfam "[zf-C4H2] Zinc finger-containing protein"; similar_genes "ZC4H2_MOUSE(e-value:6.8e-10;bit-score:62.0)"; Scaffold001 rebuild exon 3756690 3756803 . - . gene_id "RvY_01294"; transcript_id "RvY_01294.1"; Scaffold001 rebuild exon 3756900 3757107 . - . gene_id "RvY_01294"; transcript_id "RvY_01294.1"; Scaffold001 rebuild exon 3757181 3757365 . - . gene_id "RvY_01294"; transcript_id "RvY_01294.1"; Scaffold001 rebuild exon 3757558 3757779 . - . gene_id "RvY_01294"; transcript_id "RvY_01294.1"; Scaffold001 rebuild transcript 3757153 3757827 . + . gene_id "RvY_01295"; transcript_id "RvY_01295.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3757153 3757323 . + . gene_id "RvY_01295"; transcript_id "RvY_01295.1"; Scaffold001 rebuild exon 3757621 3757827 . + . gene_id "RvY_01295"; transcript_id "RvY_01295.1"; Scaffold001 rebuild transcript 3761975 3762481 . + . gene_id "RvY_01296"; transcript_id "RvY_01296.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3761975 3762481 . + . gene_id "RvY_01296"; transcript_id "RvY_01296.1"; Scaffold001 rebuild transcript 3761656 3762102 . + . gene_id "RvY_01296"; transcript_id "RvY_01296.2"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3761656 3762102 . + . gene_id "RvY_01296"; transcript_id "RvY_01296.2"; Scaffold001 rebuild transcript 3762306 3762593 . + . gene_id "RvY_01296"; transcript_id "RvY_01296.3"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 3762306 3762593 . + . gene_id "RvY_01296"; transcript_id "RvY_01296.3"; Scaffold001 rebuild transcript 3763855 3764211 . + . gene_id "RvY_01297"; transcript_id "RvY_01297.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3763855 3764211 . + . gene_id "RvY_01297"; transcript_id "RvY_01297.1"; Scaffold001 rebuild transcript 3764930 3773754 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3764930 3765105 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; Scaffold001 rebuild exon 3765664 3765783 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; Scaffold001 rebuild exon 3769434 3769472 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; Scaffold001 rebuild exon 3770280 3770687 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; Scaffold001 rebuild exon 3770928 3771281 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; Scaffold001 rebuild exon 3773613 3773754 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.1"; Scaffold001 rebuild transcript 3765620 3773754 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3765620 3765783 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.2"; Scaffold001 rebuild exon 3769434 3769472 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.2"; Scaffold001 rebuild exon 3770280 3770687 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.2"; Scaffold001 rebuild exon 3770928 3771281 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.2"; Scaffold001 rebuild exon 3773613 3773754 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.2"; Scaffold001 rebuild transcript 3765452 3773754 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3765452 3765489 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; Scaffold001 rebuild exon 3765664 3765783 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; Scaffold001 rebuild exon 3769434 3769472 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; Scaffold001 rebuild exon 3770280 3770687 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; Scaffold001 rebuild exon 3770928 3771281 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; Scaffold001 rebuild exon 3773613 3773754 . - . gene_id "RvY_01298"; transcript_id "RvY_01298.3"; Scaffold001 rebuild transcript 3776987 3787769 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; gene_name "(1,2,3,4)Ig2_Necl-1-4_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2,3,4)[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1,2,3,4)Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression."; Scaffold001 rebuild exon 3776987 3777041 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3782163 3782564 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3783344 3783517 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3783990 3784184 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3784285 3784605 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3784990 3785259 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3785688 3786494 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3787180 3787463 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild exon 3787533 3787769 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.1"; Scaffold001 rebuild transcript 3782129 3787769 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; gene_name "(1,2,3,4)Ig2_Necl-1-4_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2,3,4)[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1,2,3,4)Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression."; Scaffold001 rebuild exon 3782129 3782564 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3783344 3783517 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3783990 3784184 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3784285 3784605 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3784990 3785259 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3785688 3786494 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3787180 3787463 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild exon 3787533 3787769 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.2"; Scaffold001 rebuild transcript 3776987 3786526 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; gene_name "(1,2,3,4)Ig2_Necl-1-4_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2,3,4)[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1,2,3,4)Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression."; Scaffold001 rebuild exon 3776987 3777041 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild exon 3782163 3782564 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild exon 3783344 3783517 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild exon 3783990 3784184 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild exon 3784285 3784605 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild exon 3784990 3785259 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild exon 3785688 3786526 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.3"; Scaffold001 rebuild transcript 3782129 3786526 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; gene_name "(1,2,3,4)Ig2_Necl-1-4_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2,3,4)[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1,2,3,4)Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression."; Scaffold001 rebuild exon 3782129 3782564 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; Scaffold001 rebuild exon 3783344 3783517 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; Scaffold001 rebuild exon 3783990 3784184 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; Scaffold001 rebuild exon 3784285 3784605 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; Scaffold001 rebuild exon 3784990 3785259 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; Scaffold001 rebuild exon 3785688 3786526 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.4"; Scaffold001 rebuild transcript 3783962 3787769 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; gene_name "(1,2,3,4)Ig2_Necl-1-4_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1,2,3,4)[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1,2,3,4)Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression."; Scaffold001 rebuild exon 3783962 3784184 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; Scaffold001 rebuild exon 3784285 3784605 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; Scaffold001 rebuild exon 3784990 3785259 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; Scaffold001 rebuild exon 3785688 3786494 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; Scaffold001 rebuild exon 3787180 3787463 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; Scaffold001 rebuild exon 3787533 3787769 . + . gene_id "RvY_01299"; transcript_id "RvY_01299.5"; Scaffold001 rebuild transcript 3788290 3789305 . + . gene_id "RvY_01300"; transcript_id "RvY_01300.1"; gene_name "catA"; annotation "catechol 1,2-dioxygenase [EC:1.13.11.1]"; Pfam "[Dioxygenase_C] Dioxygenase"; CDD "Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings."; EC "EC1.13.11.1"; KO "K03381"; Scaffold001 rebuild exon 3788290 3788338 . + . gene_id "RvY_01300"; transcript_id "RvY_01300.1"; Scaffold001 rebuild exon 3788401 3788684 . + . gene_id "RvY_01300"; transcript_id "RvY_01300.1"; Scaffold001 rebuild exon 3788775 3788808 . + . gene_id "RvY_01300"; transcript_id "RvY_01300.1"; Scaffold001 rebuild exon 3788878 3789024 . + . gene_id "RvY_01300"; transcript_id "RvY_01300.1"; Scaffold001 rebuild exon 3789130 3789305 . + . gene_id "RvY_01300"; transcript_id "RvY_01300.1"; Scaffold001 rebuild transcript 3789386 3791970 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; gene_name "2a58"; annotation "putative Sodium-dependent phosphate transport protein 2B"; Pfam "[Na_Pi_cotrans] Na+/Pi-cotransporter"; CDD "Phosphate:Na+ Symporter (PNaS) Family."; KO "K14683"; similar_genes "NPT2B_PONAB(e-value:5.4e-50;bit-score:195.0)"; Scaffold001 rebuild exon 3789386 3789856 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3790123 3790523 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3790615 3790720 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3790791 3790909 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3790985 3791140 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3791203 3791382 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3791475 3791603 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild exon 3791691 3791970 . - . gene_id "RvY_01301"; transcript_id "RvY_01301.1"; Scaffold001 rebuild transcript 3792304 3797138 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; gene_name "PA"; annotation "hypothetical protein."; Pfam "[N-glycanase_N] Peptide-N-glycosidase F, N terminal|[N-glycanase_C] Peptide-N-glycosidase F, C terminal"; CDD "PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase Scaffold001 rebuild exon 3792304 3792854 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3792920 3793080 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3793173 3793338 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3793402 3793837 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3793909 3794099 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3794273 3794642 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3794912 3795425 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild exon 3797002 3797138 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.1"; Scaffold001 rebuild transcript 3792183 3797138 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; gene_name "PA"; annotation "hypothetical protein."; Pfam "[N-glycanase_N] Peptide-N-glycosidase F, N terminal|[N-glycanase_C] Peptide-N-glycosidase F, C terminal"; CDD "PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase Scaffold001 rebuild exon 3792183 3792208 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3792393 3792854 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3792920 3793080 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3793173 3793338 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3793402 3793837 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3793909 3794099 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3794273 3794642 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3794912 3795425 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild exon 3797002 3797138 . - . gene_id "RvY_01302"; transcript_id "RvY_01302.2"; Scaffold001 rebuild transcript 3796279 3798979 . + . gene_id "RvY_01303"; transcript_id "RvY_01303.1"; gene_name "Glyco_18"; annotation "hypothetical protein."; Pfam "[Chitin_bind_1] Chitin recognition protein|[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "Glycosyl hydrolase family 18."; Scaffold001 rebuild exon 3796279 3797386 . + . gene_id "RvY_01303"; transcript_id "RvY_01303.1"; Scaffold001 rebuild exon 3797595 3798979 . + . gene_id "RvY_01303"; transcript_id "RvY_01303.1"; Scaffold001 rebuild transcript 3798170 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.1"; annotation "putative Ubiquitin fusion degradation protein 1 homolog"; Pfam "[UFD1] Ubiquitin fusion degradation protein UFD1"; KO "K14016"; similar_genes "UFD1_HUMAN(e-value:1.4e-48;bit-score:190.0)"; Scaffold001 rebuild exon 3798170 3798446 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.1"; Scaffold001 rebuild exon 3798519 3798936 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.1"; Scaffold001 rebuild exon 3799420 3799693 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.1"; Scaffold001 rebuild exon 3799854 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.1"; Scaffold001 rebuild transcript 3798361 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.2"; annotation "putative Ubiquitin fusion degradation protein 1 homolog"; Pfam "[UFD1] Ubiquitin fusion degradation protein UFD1"; KO "K14016"; similar_genes "UFD1_HUMAN(e-value:1.4e-48;bit-score:190.0)"; Scaffold001 rebuild exon 3798361 3798446 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.2"; Scaffold001 rebuild exon 3798568 3798675 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.2"; Scaffold001 rebuild exon 3798760 3798936 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.2"; Scaffold001 rebuild exon 3799420 3799693 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.2"; Scaffold001 rebuild exon 3799854 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.2"; Scaffold001 rebuild transcript 3798603 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.3"; annotation "putative Ubiquitin fusion degradation protein 1 homolog"; Pfam "[UFD1] Ubiquitin fusion degradation protein UFD1"; KO "K14016"; similar_genes "UFD1_HUMAN(e-value:1.4e-48;bit-score:190.0)"; Scaffold001 rebuild exon 3798603 3798675 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.3"; Scaffold001 rebuild exon 3798738 3798936 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.3"; Scaffold001 rebuild exon 3799420 3799693 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.3"; Scaffold001 rebuild exon 3799854 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.3"; Scaffold001 rebuild transcript 3799298 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.4"; annotation "putative Ubiquitin fusion degradation protein 1 homolog"; Pfam "[UFD1] Ubiquitin fusion degradation protein UFD1"; KO "K14016"; similar_genes "UFD1_HUMAN(e-value:1.4e-48;bit-score:190.0)"; Scaffold001 rebuild exon 3799298 3799693 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.4"; Scaffold001 rebuild exon 3799854 3800426 . - . gene_id "RvY_01304"; transcript_id "RvY_01304.4"; Scaffold001 rebuild transcript 3801891 3802931 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3801891 3802237 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.1"; Scaffold001 rebuild exon 3802456 3802581 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.1"; Scaffold001 rebuild exon 3802820 3802931 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.1"; Scaffold001 rebuild transcript 3801891 3802425 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3801891 3802237 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.2"; Scaffold001 rebuild exon 3802395 3802425 . + . gene_id "RvY_01305"; transcript_id "RvY_01305.2"; Scaffold001 rebuild transcript 3803744 3804577 . + . gene_id "RvY_01306"; transcript_id "RvY_01306.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3803744 3804068 . + . gene_id "RvY_01306"; transcript_id "RvY_01306.1"; Scaffold001 rebuild exon 3804318 3804577 . + . gene_id "RvY_01306"; transcript_id "RvY_01306.1"; Scaffold001 rebuild transcript 3803373 3803846 . + . gene_id "RvY_01306"; transcript_id "RvY_01306.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3803373 3803846 . + . gene_id "RvY_01306"; transcript_id "RvY_01306.2"; Scaffold001 rebuild transcript 3804901 3805643 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3804901 3805216 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.1"; Scaffold001 rebuild exon 3805411 3805643 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.1"; Scaffold001 rebuild transcript 3804901 3805420 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3804901 3805216 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.2"; Scaffold001 rebuild exon 3805407 3805420 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.2"; Scaffold001 rebuild transcript 3804698 3804991 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3804698 3804991 . + . gene_id "RvY_01307"; transcript_id "RvY_01307.3"; Scaffold001 rebuild transcript 3805915 3806490 . + . gene_id "RvY_01308"; transcript_id "RvY_01308.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3805915 3805966 . + . gene_id "RvY_01308"; transcript_id "RvY_01308.1"; Scaffold001 rebuild exon 3806153 3806490 . + . gene_id "RvY_01308"; transcript_id "RvY_01308.1"; Scaffold001 rebuild transcript 3805943 3806161 . - . gene_id "RvY_01309"; transcript_id "RvY_01309.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3805943 3806161 . - . gene_id "RvY_01309"; transcript_id "RvY_01309.1"; Scaffold001 rebuild transcript 3806794 3809286 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold001 rebuild exon 3806794 3806979 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild exon 3807100 3807340 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild exon 3807595 3807730 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild exon 3807815 3807895 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild exon 3808670 3808764 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild exon 3808830 3808970 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild exon 3809207 3809286 . - . gene_id "RvY_01310"; transcript_id "RvY_01310.1"; Scaffold001 rebuild transcript 3808295 3808645 . + . gene_id "RvY_01311"; transcript_id "RvY_01311.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3808295 3808645 . + . gene_id "RvY_01311"; transcript_id "RvY_01311.1"; Scaffold001 rebuild transcript 3809871 3813420 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; gene_name "COG1835"; annotation "hypothetical protein."; Pfam "[Acyl_transf_3] Acyltransferase family"; CDD "Predicted acyltransferases [Lipid metabolism]"; Scaffold001 rebuild exon 3809871 3810029 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3810149 3810617 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3810870 3811022 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3811203 3811282 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3811395 3811656 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3811809 3811902 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3811967 3812449 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3812648 3812744 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3812861 3813045 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild exon 3813114 3813420 . - . gene_id "RvY_01312"; transcript_id "RvY_01312.1"; Scaffold001 rebuild transcript 3814206 3814933 . + . gene_id "RvY_01313"; transcript_id "RvY_01313.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3814206 3814360 . + . gene_id "RvY_01313"; transcript_id "RvY_01313.1"; Scaffold001 rebuild exon 3814816 3814933 . + . gene_id "RvY_01313"; transcript_id "RvY_01313.1"; Scaffold001 rebuild transcript 3814619 3815041 . - . gene_id "RvY_01314"; transcript_id "RvY_01314.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3814619 3814788 . - . gene_id "RvY_01314"; transcript_id "RvY_01314.1"; Scaffold001 rebuild exon 3814888 3815041 . - . gene_id "RvY_01314"; transcript_id "RvY_01314.1"; Scaffold001 rebuild transcript 3815519 3816052 . + . gene_id "RvY_01315"; transcript_id "RvY_01315.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3815519 3815588 . + . gene_id "RvY_01315"; transcript_id "RvY_01315.1"; Scaffold001 rebuild exon 3815742 3816052 . + . gene_id "RvY_01315"; transcript_id "RvY_01315.1"; Scaffold001 rebuild transcript 3817051 3818065 . + . gene_id "RvY_01316"; transcript_id "RvY_01316.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3817051 3817168 . + . gene_id "RvY_01316"; transcript_id "RvY_01316.1"; Scaffold001 rebuild exon 3817236 3817318 . + . gene_id "RvY_01316"; transcript_id "RvY_01316.1"; Scaffold001 rebuild exon 3817358 3817839 . + . gene_id "RvY_01316"; transcript_id "RvY_01316.1"; Scaffold001 rebuild exon 3817897 3818065 . + . gene_id "RvY_01316"; transcript_id "RvY_01316.1"; Scaffold001 rebuild transcript 3818298 3818705 . + . gene_id "RvY_01317"; transcript_id "RvY_01317.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3818298 3818705 . + . gene_id "RvY_01317"; transcript_id "RvY_01317.1"; Scaffold001 rebuild transcript 3820474 3829723 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; gene_name "Vitellogenin_N"; annotation "hypothetical protein."; Pfam "[VWD] von Willebrand factor type D domain|[DUF1943]|[Vitellogenin_N] Lipoprotein amino terminal region"; CDD "Lipoprotein amino terminal region. This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains."; Scaffold001 rebuild exon 3820474 3820805 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3820891 3821104 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3821180 3821452 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3821608 3822054 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3822328 3822720 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3822891 3823211 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3823394 3823843 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3823944 3824300 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3824484 3824885 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3824963 3825087 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3825156 3825247 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3825332 3825744 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3825936 3826290 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3826353 3826804 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3826867 3826953 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3828405 3828647 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3828714 3829070 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3829256 3829398 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3829507 3829590 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild exon 3829681 3829723 . - . gene_id "RvY_01318"; transcript_id "RvY_01318.1"; Scaffold001 rebuild transcript 3828829 3829673 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3828829 3829109 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.1"; Scaffold001 rebuild exon 3829243 3829431 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.1"; Scaffold001 rebuild exon 3829517 3829673 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.1"; Scaffold001 rebuild transcript 3828829 3829558 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3828829 3829109 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.2"; Scaffold001 rebuild exon 3829243 3829417 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.2"; Scaffold001 rebuild exon 3829517 3829558 . + . gene_id "RvY_01319"; transcript_id "RvY_01319.2"; Scaffold001 rebuild transcript 3829729 3830299 . + . gene_id "RvY_01320"; transcript_id "RvY_01320.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3829729 3829849 . + . gene_id "RvY_01320"; transcript_id "RvY_01320.1"; Scaffold001 rebuild exon 3829917 3830017 . + . gene_id "RvY_01320"; transcript_id "RvY_01320.1"; Scaffold001 rebuild exon 3830177 3830299 . + . gene_id "RvY_01320"; transcript_id "RvY_01320.1"; Scaffold001 rebuild transcript 3833243 3841974 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; gene_name "ATP1A"; annotation "Sodium/potassium-transporting ATPase subunit alpha"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "K01539"; similar_genes "ATNA_DROME(e-value:4.1e-258;bit-score:887.0)"; Scaffold001 rebuild exon 3833243 3833254 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3835393 3835542 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3835767 3835826 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3835898 3836101 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3836387 3836635 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3838133 3838250 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3838329 3838597 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3838781 3838979 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3839070 3839281 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3839426 3839748 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3839979 3840418 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3840515 3840771 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3840927 3841196 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3841280 3841410 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3841504 3841605 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild exon 3841854 3841974 . + . gene_id "RvY_01321"; transcript_id "RvY_01321.1"; Scaffold001 rebuild transcript 3842815 3843806 . - . gene_id "RvY_01322"; transcript_id "RvY_01322.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 3842815 3843080 . - . gene_id "RvY_01322"; transcript_id "RvY_01322.1"; Scaffold001 rebuild exon 3843154 3843256 . - . gene_id "RvY_01322"; transcript_id "RvY_01322.1"; Scaffold001 rebuild exon 3843315 3843348 . - . gene_id "RvY_01322"; transcript_id "RvY_01322.1"; Scaffold001 rebuild exon 3843449 3843517 . - . gene_id "RvY_01322"; transcript_id "RvY_01322.1"; Scaffold001 rebuild exon 3843601 3843806 . - . gene_id "RvY_01322"; transcript_id "RvY_01322.1"; Scaffold001 rebuild transcript 3844124 3844589 . + . gene_id "RvY_01323"; transcript_id "RvY_01323.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3844124 3844328 . + . gene_id "RvY_01323"; transcript_id "RvY_01323.1"; Scaffold001 rebuild exon 3844441 3844589 . + . gene_id "RvY_01323"; transcript_id "RvY_01323.1"; Scaffold001 rebuild transcript 3844855 3846660 . + . gene_id "RvY_01324"; transcript_id "RvY_01324.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3844855 3845026 . + . gene_id "RvY_01324"; transcript_id "RvY_01324.1"; Scaffold001 rebuild exon 3845129 3846374 . + . gene_id "RvY_01324"; transcript_id "RvY_01324.1"; Scaffold001 rebuild exon 3846444 3846660 . + . gene_id "RvY_01324"; transcript_id "RvY_01324.1"; Scaffold001 rebuild transcript 3849081 3851383 . + . gene_id "RvY_01325"; transcript_id "RvY_01325.1"; gene_name "SC5DL"; annotation "Lathosterol oxidase"; Pfam "[FA_hydroxylase] Fatty acid hydroxylase superfamily"; CDD "Sterol desaturase [Lipid metabolism]"; EC "EC1.14.21.6"; KO "K00227"; similar_genes "SC5D_HUMAN(e-value:2.0e-62;bit-score:236.0)"; Scaffold001 rebuild exon 3849081 3849290 . + . gene_id "RvY_01325"; transcript_id "RvY_01325.1"; Scaffold001 rebuild exon 3850006 3850138 . + . gene_id "RvY_01325"; transcript_id "RvY_01325.1"; Scaffold001 rebuild exon 3850373 3850784 . + . gene_id "RvY_01325"; transcript_id "RvY_01325.1"; Scaffold001 rebuild exon 3851035 3851383 . + . gene_id "RvY_01325"; transcript_id "RvY_01325.1"; Scaffold001 rebuild transcript 3851669 3852814 . - . gene_id "RvY_01326"; transcript_id "RvY_01326.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 3851669 3852814 . - . gene_id "RvY_01326"; transcript_id "RvY_01326.1"; Scaffold001 rebuild transcript 3853228 3861426 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; gene_name "TRRAP"; annotation "transformation/transcription domain-associated protein"; Pfam "[FAT]|[FATC]|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase"; CDD "TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replication, and DNA repair. TRRAP also exists in non-HAT complexes such as the p400 and MRN complexes, which are implicated in ATP-dependent remodeling and DNA repair, respectively."; KO "K08874"; Scaffold001 rebuild exon 3853228 3853548 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3853739 3854035 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3854098 3854253 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3854318 3854736 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3854866 3855085 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3855146 3855585 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3855819 3856097 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3856166 3857036 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3857181 3857688 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3857858 3858295 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3858358 3858793 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3859075 3859516 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3859696 3860098 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3860161 3860540 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3860658 3860980 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild exon 3861252 3861426 . - . gene_id "RvY_01327"; transcript_id "RvY_01327.1"; Scaffold001 rebuild transcript 3861663 3870600 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; gene_name "TRRAP"; annotation "transformation/transcription domain-associated protein"; KO "K08874"; similar_genes "TRRAP_HUMAN(e-value:1.2e-07;bit-score:55.0)"; Scaffold001 rebuild exon 3861663 3861848 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3862014 3862330 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3862414 3862904 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3864171 3864523 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3864602 3864942 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3865000 3865351 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3865491 3866170 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3866228 3866560 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3866704 3867103 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3867239 3867625 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3867690 3868092 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3868174 3868473 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3868542 3868637 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3868720 3868838 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3868920 3869052 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3869126 3869289 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3869397 3869594 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3869662 3869775 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3869840 3869944 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3870068 3870178 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3870309 3870358 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild exon 3870429 3870600 . - . gene_id "RvY_01328"; transcript_id "RvY_01328.1"; Scaffold001 rebuild transcript 3871169 3872107 . + . gene_id "RvY_01329"; transcript_id "RvY_01329.1"; gene_name "RBM7"; annotation "RNA-binding protein 7"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 3871169 3872107 . + . gene_id "RvY_01329"; transcript_id "RvY_01329.1"; Scaffold001 rebuild transcript 3872461 3873095 . - . gene_id "RvY_01330"; transcript_id "RvY_01330.1"; gene_name "RP-S25e"; annotation "putative 40S ribosomal protein S25"; Pfam "[Ribosomal_S25] S25 ribosomal protein"; KO "K02975"; similar_genes "RS25_BRABE(e-value:2.4e-31;bit-score:133.0)"; Scaffold001 rebuild exon 3872461 3872549 . - . gene_id "RvY_01330"; transcript_id "RvY_01330.1"; Scaffold001 rebuild exon 3872692 3872875 . - . gene_id "RvY_01330"; transcript_id "RvY_01330.1"; Scaffold001 rebuild exon 3872945 3873034 . - . gene_id "RvY_01330"; transcript_id "RvY_01330.1"; Scaffold001 rebuild exon 3873093 3873095 . - . gene_id "RvY_01330"; transcript_id "RvY_01330.1"; Scaffold001 rebuild transcript 3873717 3876712 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; gene_name "PPP2R1"; annotation "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform"; Pfam "[Adaptin_N] Adaptin N terminal region|[CLASP_N] CLASP N terminal|[HEAT_2] HEAT repeats|[Vac14_Fab1_bd] Vacuolar 14 Fab1-binding region|[HEAT_EZ] HEAT-like repeat|[HEAT] HEAT repeat"; KO "K03456"; similar_genes "2AAA_HUMAN(e-value:3.6e-102;bit-score:368.0)"; Scaffold001 rebuild exon 3873717 3873845 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3873907 3873997 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3874173 3874273 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3874632 3874773 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3874840 3875078 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3875174 3875329 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3875397 3875511 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3875604 3875760 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3875831 3876114 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3876173 3876327 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3876395 3876537 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild exon 3876610 3876712 . + . gene_id "RvY_01331"; transcript_id "RvY_01331.1"; Scaffold001 rebuild transcript 3877350 3883764 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; gene_name "SMURF"; annotation "E3 ubiquitin-protein ligase SMURF2"; Pfam "[WW]|[HECT] HECT-domain (ubiquitin-transferase)|[C2]"; CDD "Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K04678"; similar_genes "SMUF2_DANRE(e-value:1.3e-184;bit-score:642.0)"; Scaffold001 rebuild exon 3877350 3877449 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3877561 3877645 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3877723 3877924 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3877984 3878104 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3878216 3878353 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3878432 3878610 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3878675 3878789 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3878894 3879139 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3879247 3879436 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3879565 3880029 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3880175 3880308 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3881104 3881212 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3882032 3882070 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild exon 3883665 3883764 . - . gene_id "RvY_01332"; transcript_id "RvY_01332.1"; Scaffold001 rebuild transcript 3884912 3886804 . - . gene_id "RvY_01333"; transcript_id "RvY_01333.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold001 rebuild exon 3884912 3885256 . - . gene_id "RvY_01333"; transcript_id "RvY_01333.1"; Scaffold001 rebuild exon 3885467 3886150 . - . gene_id "RvY_01333"; transcript_id "RvY_01333.1"; Scaffold001 rebuild exon 3886238 3886804 . - . gene_id "RvY_01333"; transcript_id "RvY_01333.1"; Scaffold001 rebuild transcript 3885591 3886042 . + . gene_id "RvY_01334"; transcript_id "RvY_01334.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3885591 3885875 . + . gene_id "RvY_01334"; transcript_id "RvY_01334.1"; Scaffold001 rebuild exon 3885983 3886042 . + . gene_id "RvY_01334"; transcript_id "RvY_01334.1"; Scaffold001 rebuild transcript 3887866 3888698 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold001 rebuild exon 3887866 3887932 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.1"; Scaffold001 rebuild exon 3888023 3888121 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.1"; Scaffold001 rebuild exon 3888185 3888320 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.1"; Scaffold001 rebuild exon 3888404 3888698 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.1"; Scaffold001 rebuild transcript 3887866 3888783 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.2"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold001 rebuild exon 3887866 3887932 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.2"; Scaffold001 rebuild exon 3888023 3888121 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.2"; Scaffold001 rebuild exon 3888185 3888320 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.2"; Scaffold001 rebuild exon 3888404 3888595 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.2"; Scaffold001 rebuild exon 3888699 3888783 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.2"; Scaffold001 rebuild transcript 3886098 3888116 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.3"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold001 rebuild exon 3886098 3886159 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.3"; Scaffold001 rebuild exon 3886234 3886304 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.3"; Scaffold001 rebuild exon 3886597 3886805 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.3"; Scaffold001 rebuild exon 3887856 3887932 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.3"; Scaffold001 rebuild exon 3888023 3888116 . + . gene_id "RvY_01335"; transcript_id "RvY_01335.3"; Scaffold001 rebuild transcript 3888928 3889943 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.1"; gene_name "kgd"; annotation "hypothetical protein."; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; Scaffold001 rebuild exon 3888928 3888928 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.1"; Scaffold001 rebuild exon 3889007 3889048 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.1"; Scaffold001 rebuild exon 3889154 3889567 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.1"; Scaffold001 rebuild exon 3889645 3889707 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.1"; Scaffold001 rebuild exon 3889768 3889943 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.1"; Scaffold001 rebuild transcript 3888928 3889943 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.2"; gene_name "kgd"; annotation "hypothetical protein."; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; Scaffold001 rebuild exon 3888928 3888928 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.2"; Scaffold001 rebuild exon 3889007 3889048 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.2"; Scaffold001 rebuild exon 3889154 3889567 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.2"; Scaffold001 rebuild exon 3889645 3889707 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.2"; Scaffold001 rebuild exon 3889786 3889943 . + . gene_id "RvY_01336"; transcript_id "RvY_01336.2"; Scaffold001 rebuild transcript 3890002 3890984 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3890002 3890116 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.1"; Scaffold001 rebuild exon 3890172 3890362 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.1"; Scaffold001 rebuild exon 3890592 3890694 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.1"; Scaffold001 rebuild exon 3890774 3890854 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.1"; Scaffold001 rebuild exon 3890914 3890984 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.1"; Scaffold001 rebuild transcript 3890002 3890913 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3890002 3890116 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.2"; Scaffold001 rebuild exon 3890172 3890362 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.2"; Scaffold001 rebuild exon 3890592 3890694 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.2"; Scaffold001 rebuild exon 3890774 3890913 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.2"; Scaffold001 rebuild transcript 3890864 3891357 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3890864 3891110 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.3"; Scaffold001 rebuild exon 3891181 3891230 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.3"; Scaffold001 rebuild exon 3891307 3891357 . + . gene_id "RvY_01337"; transcript_id "RvY_01337.3"; Scaffold001 rebuild transcript 3891816 3892782 . + . gene_id "RvY_01338"; transcript_id "RvY_01338.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 3891816 3891885 . + . gene_id "RvY_01338"; transcript_id "RvY_01338.1"; Scaffold001 rebuild exon 3891958 3892053 . + . gene_id "RvY_01338"; transcript_id "RvY_01338.1"; Scaffold001 rebuild exon 3892117 3892249 . + . gene_id "RvY_01338"; transcript_id "RvY_01338.1"; Scaffold001 rebuild exon 3892325 3892503 . + . gene_id "RvY_01338"; transcript_id "RvY_01338.1"; Scaffold001 rebuild exon 3892565 3892782 . + . gene_id "RvY_01338"; transcript_id "RvY_01338.1"; Scaffold001 rebuild transcript 3895886 3896685 . + . gene_id "RvY_01339"; transcript_id "RvY_01339.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3895886 3895957 . + . gene_id "RvY_01339"; transcript_id "RvY_01339.1"; Scaffold001 rebuild exon 3896046 3896208 . + . gene_id "RvY_01339"; transcript_id "RvY_01339.1"; Scaffold001 rebuild exon 3896303 3896553 . + . gene_id "RvY_01339"; transcript_id "RvY_01339.1"; Scaffold001 rebuild exon 3896638 3896685 . + . gene_id "RvY_01339"; transcript_id "RvY_01339.1"; Scaffold001 rebuild transcript 3897242 3899132 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; gene_name "(1)ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 3897242 3897320 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3897419 3897514 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3897589 3897724 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3897797 3897975 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3898051 3898100 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3898164 3898389 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3898451 3898672 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild exon 3898735 3899132 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.1"; Scaffold001 rebuild transcript 3899114 3900260 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.2"; gene_name "(1)ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 3899114 3899243 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.2"; Scaffold001 rebuild exon 3899328 3899518 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.2"; Scaffold001 rebuild exon 3899598 3899760 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.2"; Scaffold001 rebuild exon 3899953 3900260 . + . gene_id "RvY_01340"; transcript_id "RvY_01340.2"; Scaffold001 rebuild transcript 3898882 3899115 . - . gene_id "RvY_01341"; transcript_id "RvY_01341.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3898882 3899115 . - . gene_id "RvY_01341"; transcript_id "RvY_01341.1"; Scaffold001 rebuild transcript 3900570 3901952 . - . gene_id "RvY_01342"; transcript_id "RvY_01342.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3900570 3900738 . - . gene_id "RvY_01342"; transcript_id "RvY_01342.1"; Scaffold001 rebuild exon 3900873 3901768 . - . gene_id "RvY_01342"; transcript_id "RvY_01342.1"; Scaffold001 rebuild exon 3901869 3901952 . - . gene_id "RvY_01342"; transcript_id "RvY_01342.1"; Scaffold001 rebuild transcript 3902848 3910622 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; gene_name "MAM"; annotation "hypothetical protein."; Pfam "[MAM]"; CDD "Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region."; Scaffold001 rebuild exon 3902848 3903052 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3903127 3903401 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3903488 3903572 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3903637 3903926 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3903987 3904233 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3904305 3904508 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3904605 3904976 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3905244 3905680 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3905734 3905998 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3906076 3906338 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3906410 3906647 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3906745 3906924 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3907055 3907438 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3907511 3907663 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3907725 3909269 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3909389 3909775 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild exon 3909844 3910622 . + . gene_id "RvY_01343"; transcript_id "RvY_01343.1"; Scaffold001 rebuild transcript 3909796 3910459 . - . gene_id "RvY_01344"; transcript_id "RvY_01344.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3909796 3909852 . - . gene_id "RvY_01344"; transcript_id "RvY_01344.1"; Scaffold001 rebuild exon 3909875 3910459 . - . gene_id "RvY_01344"; transcript_id "RvY_01344.1"; Scaffold001 rebuild transcript 3910867 3914467 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; annotation "hypothetical protein."; Pfam "[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; EC "EC3.1.4.1"; similar_genes "ENPP1_HUMAN(e-value:6.8e-10;bit-score:62.0)"; Scaffold001 rebuild exon 3910867 3911019 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3911073 3911235 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3911320 3911530 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3911591 3911729 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3911808 3912017 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3912116 3912655 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3912738 3912967 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3913101 3913257 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3913334 3913685 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3913913 3914118 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3914199 3914324 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild exon 3914402 3914467 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.1"; Scaffold001 rebuild transcript 3910998 3914467 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; annotation "hypothetical protein."; Pfam "[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; EC "EC3.1.4.1"; similar_genes "ENPP1_HUMAN(e-value:6.8e-10;bit-score:62.0)"; Scaffold001 rebuild exon 3910998 3911235 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3911320 3911530 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3911591 3911729 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3911808 3912017 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3912116 3912655 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3912738 3912967 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3913101 3913257 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3913334 3913685 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3913913 3914118 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3914199 3914324 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild exon 3914402 3914467 . - . gene_id "RvY_01345"; transcript_id "RvY_01345.2"; Scaffold001 rebuild transcript 3915165 3915563 . + . gene_id "RvY_01346"; transcript_id "RvY_01346.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3915165 3915563 . + . gene_id "RvY_01346"; transcript_id "RvY_01346.1"; Scaffold001 rebuild transcript 3916615 3918313 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold001 rebuild exon 3916615 3917039 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.1"; Scaffold001 rebuild exon 3917133 3917208 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.1"; Scaffold001 rebuild exon 3917297 3917416 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.1"; Scaffold001 rebuild exon 3917567 3917687 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.1"; Scaffold001 rebuild exon 3918249 3918313 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.1"; Scaffold001 rebuild transcript 3917031 3918426 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.2"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold001 rebuild exon 3917031 3917039 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.2"; Scaffold001 rebuild exon 3917133 3917208 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.2"; Scaffold001 rebuild exon 3917297 3917416 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.2"; Scaffold001 rebuild exon 3917567 3917687 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.2"; Scaffold001 rebuild exon 3918249 3918426 . + . gene_id "RvY_01347"; transcript_id "RvY_01347.2"; Scaffold001 rebuild transcript 3919738 3922931 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[fn3] Fibronectin type III domain"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR1_DROME(e-value:1.2e-15;bit-score:81.0)"; Scaffold001 rebuild exon 3919738 3919939 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3920058 3920335 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3920506 3920873 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3920986 3921220 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3921294 3921535 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3921700 3921814 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3921926 3922149 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3922220 3922406 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3922506 3922597 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3922677 3922863 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild exon 3922929 3922931 . - . gene_id "RvY_01348"; transcript_id "RvY_01348.1"; Scaffold001 rebuild transcript 3922842 3923021 . + . gene_id "RvY_01349"; transcript_id "RvY_01349.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3922842 3923021 . + . gene_id "RvY_01349"; transcript_id "RvY_01349.1"; Scaffold001 rebuild transcript 3923626 3924297 . + . gene_id "RvY_01350"; transcript_id "RvY_01350.1"; gene_name "RP-L37e"; annotation "putative Probable 60S ribosomal protein L37-A"; Pfam "[Ribosomal_L37e] Ribosomal protein L37e"; CDD "60S ribosomal protein L37; Provisional"; KO "K02922"; similar_genes "RL371_DROME(e-value:5.5e-35;bit-score:145.0)"; Scaffold001 rebuild exon 3923626 3923628 . + . gene_id "RvY_01350"; transcript_id "RvY_01350.1"; Scaffold001 rebuild exon 3923696 3923831 . + . gene_id "RvY_01350"; transcript_id "RvY_01350.1"; Scaffold001 rebuild exon 3923893 3923977 . + . gene_id "RvY_01350"; transcript_id "RvY_01350.1"; Scaffold001 rebuild exon 3924210 3924297 . + . gene_id "RvY_01350"; transcript_id "RvY_01350.1"; Scaffold001 rebuild transcript 3924965 3932062 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; gene_name "MARK"; annotation "MAP/microtubule affinity-regulating kinase 3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[KA1] Kinase associated domain 1"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08798"; similar_genes "MARK3_MOUSE(e-value:5.5e-156;bit-score:547.0)"; Scaffold001 rebuild exon 3924965 3925830 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; Scaffold001 rebuild exon 3926109 3926520 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; Scaffold001 rebuild exon 3926686 3927005 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; Scaffold001 rebuild exon 3927073 3927699 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; Scaffold001 rebuild exon 3927846 3927894 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; Scaffold001 rebuild exon 3931478 3932062 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.1"; Scaffold001 rebuild transcript 3924965 3932062 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; gene_name "MARK"; annotation "MAP/microtubule affinity-regulating kinase 3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[KA1] Kinase associated domain 1"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08798"; similar_genes "MARK3_MOUSE(e-value:5.5e-156;bit-score:547.0)"; Scaffold001 rebuild exon 3924965 3925830 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; Scaffold001 rebuild exon 3926160 3926520 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; Scaffold001 rebuild exon 3926686 3927005 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; Scaffold001 rebuild exon 3927073 3927699 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; Scaffold001 rebuild exon 3927846 3927894 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; Scaffold001 rebuild exon 3931478 3932062 . - . gene_id "RvY_01351"; transcript_id "RvY_01351.2"; Scaffold001 rebuild transcript 3932752 3933685 . + . gene_id "RvY_01352"; transcript_id "RvY_01352.1"; gene_name "Ribosomal_S15p_S13e"; annotation "hypothetical protein."; CDD "Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix."; Scaffold001 rebuild exon 3932752 3933223 . + . gene_id "RvY_01352"; transcript_id "RvY_01352.1"; Scaffold001 rebuild exon 3933288 3933685 . + . gene_id "RvY_01352"; transcript_id "RvY_01352.1"; Scaffold001 rebuild transcript 3934675 3936619 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.1"; gene_name "(1)GPI7"; annotation "(1)putative GPI ethanolamine phosphate transferase 2(2)hypothetical protein."; Pfam "[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "(1)Uncharacterized proteins of the AP superfamily [General function prediction only]"; EC "(1)EC2.-.-.-|EC2.7.-.-"; KO "(1)K05310"; similar_genes "(1)PIGG_HUMAN(e-value:5.9e-26;bit-score:115.0)"; Scaffold001 rebuild exon 3934675 3935493 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.1"; Scaffold001 rebuild exon 3935579 3935812 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.1"; Scaffold001 rebuild exon 3935917 3936126 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.1"; Scaffold001 rebuild exon 3936185 3936619 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.1"; Scaffold001 rebuild transcript 3933708 3934770 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.2"; gene_name "(1)GPI7"; annotation "(1)putative GPI ethanolamine phosphate transferase 2(2)hypothetical protein."; Pfam "[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "(1)Uncharacterized proteins of the AP superfamily [General function prediction only]"; EC "(1)EC2.-.-.-|EC2.7.-.-"; KO "(1)K05310"; similar_genes "(1)PIGG_HUMAN(e-value:5.9e-26;bit-score:115.0)"; Scaffold001 rebuild exon 3933708 3934332 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.2"; Scaffold001 rebuild exon 3934455 3934589 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.2"; Scaffold001 rebuild exon 3934679 3934770 . - . gene_id "RvY_01353"; transcript_id "RvY_01353.2"; Scaffold001 rebuild transcript 3936751 3937203 . + . gene_id "RvY_01354"; transcript_id "RvY_01354.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3936751 3937203 . + . gene_id "RvY_01354"; transcript_id "RvY_01354.1"; Scaffold001 rebuild transcript 3938510 3940031 . - . gene_id "RvY_01355"; transcript_id "RvY_01355.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3938510 3939053 . - . gene_id "RvY_01355"; transcript_id "RvY_01355.1"; Scaffold001 rebuild exon 3939260 3939842 . - . gene_id "RvY_01355"; transcript_id "RvY_01355.1"; Scaffold001 rebuild exon 3939914 3940031 . - . gene_id "RvY_01355"; transcript_id "RvY_01355.1"; Scaffold001 rebuild transcript 3940617 3942163 . + . gene_id "RvY_01356"; transcript_id "RvY_01356.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3940617 3940952 . + . gene_id "RvY_01356"; transcript_id "RvY_01356.1"; Scaffold001 rebuild exon 3941222 3941591 . + . gene_id "RvY_01356"; transcript_id "RvY_01356.1"; Scaffold001 rebuild exon 3941662 3941900 . + . gene_id "RvY_01356"; transcript_id "RvY_01356.1"; Scaffold001 rebuild exon 3941972 3942163 . + . gene_id "RvY_01356"; transcript_id "RvY_01356.1"; Scaffold001 rebuild transcript 3942509 3944908 . - . gene_id "RvY_01357"; transcript_id "RvY_01357.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3942509 3942602 . - . gene_id "RvY_01357"; transcript_id "RvY_01357.1"; Scaffold001 rebuild exon 3943075 3943225 . - . gene_id "RvY_01357"; transcript_id "RvY_01357.1"; Scaffold001 rebuild exon 3943352 3943821 . - . gene_id "RvY_01357"; transcript_id "RvY_01357.1"; Scaffold001 rebuild exon 3943920 3944083 . - . gene_id "RvY_01357"; transcript_id "RvY_01357.1"; Scaffold001 rebuild exon 3944600 3944908 . - . gene_id "RvY_01357"; transcript_id "RvY_01357.1"; Scaffold001 rebuild transcript 3946188 3946373 . + . gene_id "RvY_01358"; transcript_id "RvY_01358.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3946188 3946373 . + . gene_id "RvY_01358"; transcript_id "RvY_01358.1"; Scaffold001 rebuild transcript 3946956 3947652 . + . gene_id "RvY_01359"; transcript_id "RvY_01359.1"; annotation "hypothetical protein."; similar_genes "RT24_DROME(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 3946956 3947098 . + . gene_id "RvY_01359"; transcript_id "RvY_01359.1"; Scaffold001 rebuild exon 3947253 3947652 . + . gene_id "RvY_01359"; transcript_id "RvY_01359.1"; Scaffold001 rebuild transcript 3947795 3948244 . - . gene_id "RvY_01360"; transcript_id "RvY_01360.1"; gene_name "STX6"; annotation "syntaxin 6"; Pfam "[SNARE]"; KO "K08498"; Scaffold001 rebuild exon 3947795 3948244 . - . gene_id "RvY_01360"; transcript_id "RvY_01360.1"; Scaffold001 rebuild transcript 3948066 3948563 . + . gene_id "RvY_01361"; transcript_id "RvY_01361.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3948066 3948563 . + . gene_id "RvY_01361"; transcript_id "RvY_01361.1"; Scaffold001 rebuild transcript 3950299 3951478 . + . gene_id "RvY_01362"; transcript_id "RvY_01362.1"; gene_name "EF-TS"; annotation "elongation factor EF-Ts"; Pfam "[EF_TS] Elongation factor TS"; CDD "Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]"; KO "K02357"; similar_genes "EFTS_MOUSE(e-value:1.9e-16;bit-score:84.0)"; Scaffold001 rebuild exon 3950299 3950739 . + . gene_id "RvY_01362"; transcript_id "RvY_01362.1"; Scaffold001 rebuild exon 3950812 3950961 . + . gene_id "RvY_01362"; transcript_id "RvY_01362.1"; Scaffold001 rebuild exon 3951098 3951478 . + . gene_id "RvY_01362"; transcript_id "RvY_01362.1"; Scaffold001 rebuild transcript 3951796 3952617 . - . gene_id "RvY_01363"; transcript_id "RvY_01363.1"; gene_name "COX4"; annotation "cytochrome c oxidase subunit IV [EC:1.9.3.1]"; Pfam "[COX4] Cytochrome c oxidase subunit IV"; CDD "Cytochrome c oxidase subunit IV. Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The uncharacterized yeast protein YGL226W appears to be the yeast COX IV subunit."; EC "EC1.9.3.1"; KO "K02263"; similar_genes "COX41_PITPI(e-value:1.0e-10;bit-score:65.0)"; Scaffold001 rebuild exon 3951796 3951932 . - . gene_id "RvY_01363"; transcript_id "RvY_01363.1"; Scaffold001 rebuild exon 3952015 3952232 . - . gene_id "RvY_01363"; transcript_id "RvY_01363.1"; Scaffold001 rebuild exon 3952349 3952617 . - . gene_id "RvY_01363"; transcript_id "RvY_01363.1"; Scaffold001 rebuild transcript 3953323 3954566 . + . gene_id "RvY_01364"; transcript_id "RvY_01364.1"; gene_name "RBM17"; annotation "putative Splicing factor 45"; Pfam "[G-patch]"; CDD "poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA."; KO "K12840"; similar_genes "SPF45_MOUSE(e-value:3.1e-29;bit-score:126.0)"; Scaffold001 rebuild exon 3953323 3953562 . + . gene_id "RvY_01364"; transcript_id "RvY_01364.1"; Scaffold001 rebuild exon 3953635 3954057 . + . gene_id "RvY_01364"; transcript_id "RvY_01364.1"; Scaffold001 rebuild exon 3954117 3954566 . + . gene_id "RvY_01364"; transcript_id "RvY_01364.1"; Scaffold001 rebuild transcript 3954875 3955090 . - . gene_id "RvY_01365"; transcript_id "RvY_01365.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3954875 3955090 . - . gene_id "RvY_01365"; transcript_id "RvY_01365.1"; Scaffold001 rebuild transcript 3955719 3957741 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3955719 3956412 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.1"; Scaffold001 rebuild exon 3956508 3956974 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.1"; Scaffold001 rebuild exon 3957044 3957125 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.1"; Scaffold001 rebuild exon 3957704 3957741 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.1"; Scaffold001 rebuild transcript 3956786 3958364 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3956786 3956974 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; Scaffold001 rebuild exon 3957044 3957642 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; Scaffold001 rebuild exon 3957704 3957822 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; Scaffold001 rebuild exon 3957891 3958084 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; Scaffold001 rebuild exon 3958165 3958272 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; Scaffold001 rebuild exon 3958353 3958364 . + . gene_id "RvY_01366"; transcript_id "RvY_01366.2"; Scaffold001 rebuild transcript 3959581 3961000 . - . gene_id "RvY_01367"; transcript_id "RvY_01367.1"; gene_name "UDPGT"; annotation "hypothetical protein."; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "UDP-glucoronosyl and UDP-glucosyl transferase."; EC "EC2.4.1.115"; similar_genes "UFOG1_MAIZE(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 3959581 3959845 . - . gene_id "RvY_01367"; transcript_id "RvY_01367.1"; Scaffold001 rebuild exon 3959910 3961000 . - . gene_id "RvY_01367"; transcript_id "RvY_01367.1"; Scaffold001 rebuild transcript 3961831 3964364 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; gene_name "SPAST"; annotation "Spastin"; Pfam "[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.6.4.3"; KO "K13254"; similar_genes "SPAST_BOVIN(e-value:7.9e-81;bit-score:298.0)"; Scaffold001 rebuild exon 3961831 3962203 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3962299 3962484 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3962571 3962743 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3962809 3963126 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3963222 3963368 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3963463 3963710 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3963940 3964174 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild exon 3964245 3964364 . + . gene_id "RvY_01368"; transcript_id "RvY_01368.1"; Scaffold001 rebuild transcript 3964558 3965125 . - . gene_id "RvY_01369"; transcript_id "RvY_01369.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3964558 3964580 . - . gene_id "RvY_01369"; transcript_id "RvY_01369.1"; Scaffold001 rebuild exon 3964639 3965125 . - . gene_id "RvY_01369"; transcript_id "RvY_01369.1"; Scaffold001 rebuild transcript 3965828 3968226 . - . gene_id "RvY_01370"; transcript_id "RvY_01370.1"; gene_name "TFDP1"; annotation "transcription factor Dp-1"; Pfam "[DP] Transcription factor DP|[E2F_TDP] E2F/DP family winged-helix DNA-binding domain"; CDD "E2F/DP family winged-helix DNA-binding domain. This family contains the transcription factor E2F and its dimerization partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins."; KO "K04683"; similar_genes "TFDP_DROME(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 3965828 3966028 . - . gene_id "RvY_01370"; transcript_id "RvY_01370.1"; Scaffold001 rebuild exon 3966394 3966873 . - . gene_id "RvY_01370"; transcript_id "RvY_01370.1"; Scaffold001 rebuild exon 3966936 3967313 . - . gene_id "RvY_01370"; transcript_id "RvY_01370.1"; Scaffold001 rebuild exon 3967523 3967920 . - . gene_id "RvY_01370"; transcript_id "RvY_01370.1"; Scaffold001 rebuild exon 3967980 3968226 . - . gene_id "RvY_01370"; transcript_id "RvY_01370.1"; Scaffold001 rebuild transcript 3968605 3968805 . + . gene_id "RvY_01371"; transcript_id "RvY_01371.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3968605 3968805 . + . gene_id "RvY_01371"; transcript_id "RvY_01371.1"; Scaffold001 rebuild transcript 3969424 3971954 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; gene_name "POLE2"; annotation "putative DNA polymerase epsilon subunit 2"; Pfam "[Dpoe2NT] DNA polymerases epsilon N terminal|[DNA_pol_E_B] DNA polymerase alpha/epsilon subunit B"; EC "EC2.7.7.7"; KO "K02325"; similar_genes "DPOE2_CHICK(e-value:6.4e-36;bit-score:148.0)"; Scaffold001 rebuild exon 3969424 3969473 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3969607 3969707 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3969816 3969891 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3969967 3970044 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3970116 3970209 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3970302 3970373 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3970440 3970705 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3970781 3970922 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3971123 3971243 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3971315 3971634 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild exon 3971697 3971954 . + . gene_id "RvY_01372"; transcript_id "RvY_01372.1"; Scaffold001 rebuild transcript 3972275 3974210 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; gene_name "GlpF"; annotation "hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]"; similar_genes "AQP9_HUMAN(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 3972275 3972530 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; Scaffold001 rebuild exon 3972641 3972858 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; Scaffold001 rebuild exon 3972948 3973069 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; Scaffold001 rebuild exon 3973193 3973330 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; Scaffold001 rebuild exon 3973815 3973959 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; Scaffold001 rebuild exon 3974109 3974210 . - . gene_id "RvY_01373"; transcript_id "RvY_01373.1"; Scaffold001 rebuild transcript 3976185 3980082 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; gene_name "LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat"; CDD "Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold001 rebuild exon 3976185 3976418 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3976540 3977441 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3977544 3977685 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3977909 3978037 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3978104 3978249 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3978346 3978493 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3978859 3978978 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3979061 3979207 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3979296 3979393 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild exon 3979470 3980082 . - . gene_id "RvY_01374"; transcript_id "RvY_01374.1"; Scaffold001 rebuild transcript 3980524 3982864 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; gene_name "(2)WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(2)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14552"; similar_genes "(2)WDR75_XENLA(e-value:1.5e-09;bit-score:61.0)"; Scaffold001 rebuild exon 3980524 3980922 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3980985 3981427 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3981487 3981575 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3981653 3981842 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3981928 3982070 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3982137 3982318 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3982420 3982625 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild exon 3982714 3982864 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.1"; Scaffold001 rebuild transcript 3982652 3984004 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; gene_name "(2)WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(2)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14552"; similar_genes "(2)WDR75_XENLA(e-value:1.5e-09;bit-score:61.0)"; Scaffold001 rebuild exon 3982652 3982961 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; Scaffold001 rebuild exon 3983022 3983117 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; Scaffold001 rebuild exon 3983178 3983248 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; Scaffold001 rebuild exon 3983313 3983467 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; Scaffold001 rebuild exon 3983541 3983845 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; Scaffold001 rebuild exon 3983931 3984004 . - . gene_id "RvY_01375"; transcript_id "RvY_01375.2"; Scaffold001 rebuild transcript 3984584 3984781 . + . gene_id "RvY_01376"; transcript_id "RvY_01376.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3984584 3984781 . + . gene_id "RvY_01376"; transcript_id "RvY_01376.1"; Scaffold001 rebuild transcript 3987351 3987938 . + . gene_id "RvY_01377"; transcript_id "RvY_01377.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3987351 3987938 . + . gene_id "RvY_01377"; transcript_id "RvY_01377.1"; Scaffold001 rebuild transcript 3988778 3989790 . + . gene_id "RvY_01378"; transcript_id "RvY_01378.1"; annotation "hypothetical protein."; Pfam "[CUB]"; Scaffold001 rebuild exon 3988778 3988999 . + . gene_id "RvY_01378"; transcript_id "RvY_01378.1"; Scaffold001 rebuild exon 3989072 3989141 . + . gene_id "RvY_01378"; transcript_id "RvY_01378.1"; Scaffold001 rebuild exon 3989218 3989315 . + . gene_id "RvY_01378"; transcript_id "RvY_01378.1"; Scaffold001 rebuild exon 3989386 3989425 . + . gene_id "RvY_01378"; transcript_id "RvY_01378.1"; Scaffold001 rebuild exon 3989498 3989790 . + . gene_id "RvY_01378"; transcript_id "RvY_01378.1"; Scaffold001 rebuild transcript 3990184 3991730 . + . gene_id "RvY_01379"; transcript_id "RvY_01379.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3990184 3990265 . + . gene_id "RvY_01379"; transcript_id "RvY_01379.1"; Scaffold001 rebuild exon 3990337 3990461 . + . gene_id "RvY_01379"; transcript_id "RvY_01379.1"; Scaffold001 rebuild exon 3990711 3991730 . + . gene_id "RvY_01379"; transcript_id "RvY_01379.1"; Scaffold001 rebuild transcript 3991933 3994021 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; gene_name "udp"; annotation "uridine phosphorylase [EC:2.4.2.3]"; Pfam "[PNP_UDP_1] Phosphorylase superfamily"; CDD "uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer."; EC "EC2.4.2.3"; KO "K00757"; similar_genes "UPP1_HUMAN(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 3991933 3992363 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild exon 3992435 3992485 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild exon 3992573 3992650 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild exon 3992727 3993078 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild exon 3993338 3993499 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild exon 3993603 3993732 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild exon 3993813 3994021 . - . gene_id "RvY_01380"; transcript_id "RvY_01380.1"; Scaffold001 rebuild transcript 3995204 3998788 . + . gene_id "RvY_01381"; transcript_id "RvY_01381.1"; annotation "hypothetical protein."; Pfam "[Phostensin] Phostensin PP1-binding and SH3-binding region"; Scaffold001 rebuild exon 3995204 3995477 . + . gene_id "RvY_01381"; transcript_id "RvY_01381.1"; Scaffold001 rebuild exon 3995916 3996095 . + . gene_id "RvY_01381"; transcript_id "RvY_01381.1"; Scaffold001 rebuild exon 3996604 3998106 . + . gene_id "RvY_01381"; transcript_id "RvY_01381.1"; Scaffold001 rebuild exon 3998379 3998788 . + . gene_id "RvY_01381"; transcript_id "RvY_01381.1"; Scaffold001 rebuild transcript 3998280 3998528 . - . gene_id "RvY_01382"; transcript_id "RvY_01382.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 3998280 3998528 . - . gene_id "RvY_01382"; transcript_id "RvY_01382.1"; Scaffold001 rebuild transcript 4000088 4001803 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 4000088 4000114 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild exon 4000228 4000357 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild exon 4000462 4000527 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild exon 4000684 4000836 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild exon 4000923 4001017 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild exon 4001077 4001470 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild exon 4001652 4001803 . + . gene_id "RvY_01383"; transcript_id "RvY_01383.1"; Scaffold001 rebuild transcript 4003381 4009211 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; gene_name "FN3"; annotation "hypothetical protein."; Pfam "[SusE] SusE outer membrane protein|[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain"; CDD "Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases."; similar_genes "FND3A_MOUSE(e-value:1.2e-13;bit-score:74.0)"; Scaffold001 rebuild exon 4003381 4003719 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4003980 4004268 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4004350 4004556 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4004752 4005086 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4005288 4005482 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4005551 4005741 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4005983 4006267 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4006338 4006563 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4006790 4007149 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4007529 4007623 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4007716 4007759 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4007945 4008174 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4008273 4008634 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4008738 4008897 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild exon 4008993 4009211 . - . gene_id "RvY_01384"; transcript_id "RvY_01384.1"; Scaffold001 rebuild transcript 4009378 4009587 . + . gene_id "RvY_01385"; transcript_id "RvY_01385.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4009378 4009587 . + . gene_id "RvY_01385"; transcript_id "RvY_01385.1"; Scaffold001 rebuild transcript 4010952 4011614 . - . gene_id "RvY_01386"; transcript_id "RvY_01386.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4010952 4011614 . - . gene_id "RvY_01386"; transcript_id "RvY_01386.1"; Scaffold001 rebuild transcript 4012849 4013035 . - . gene_id "RvY_01387"; transcript_id "RvY_01387.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4012849 4012989 . - . gene_id "RvY_01387"; transcript_id "RvY_01387.1"; Scaffold001 rebuild exon 4013027 4013035 . - . gene_id "RvY_01387"; transcript_id "RvY_01387.1"; Scaffold001 rebuild transcript 4013479 4016909 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; gene_name "S_TKc"; annotation "putative Putative dual specificity tyrosine-phosphorylation-regulated kinase 3 homolog"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.12.1"; similar_genes "DYRK3_DROME(e-value:1.0e-29;bit-score:128.0)"; Scaffold001 rebuild exon 4013479 4013768 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild exon 4014441 4014777 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild exon 4015536 4015796 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild exon 4015862 4016073 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild exon 4016155 4016266 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild exon 4016497 4016664 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild exon 4016802 4016909 . - . gene_id "RvY_01388"; transcript_id "RvY_01388.1"; Scaffold001 rebuild transcript 4017415 4018998 . - . gene_id "RvY_01389"; transcript_id "RvY_01389.1"; gene_name "PLEKHA8"; annotation "pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8"; Pfam "[GLTP] Glycolipid transfer protein (GLTP)"; KO "K08051"; Scaffold001 rebuild exon 4017415 4018131 . - . gene_id "RvY_01389"; transcript_id "RvY_01389.1"; Scaffold001 rebuild exon 4018229 4018345 . - . gene_id "RvY_01389"; transcript_id "RvY_01389.1"; Scaffold001 rebuild exon 4018461 4018550 . - . gene_id "RvY_01389"; transcript_id "RvY_01389.1"; Scaffold001 rebuild exon 4018638 4018844 . - . gene_id "RvY_01389"; transcript_id "RvY_01389.1"; Scaffold001 rebuild exon 4018951 4018998 . - . gene_id "RvY_01389"; transcript_id "RvY_01389.1"; Scaffold001 rebuild transcript 4019669 4020117 . + . gene_id "RvY_01390"; transcript_id "RvY_01390.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4019669 4019674 . + . gene_id "RvY_01390"; transcript_id "RvY_01390.1"; Scaffold001 rebuild exon 4019772 4019954 . + . gene_id "RvY_01390"; transcript_id "RvY_01390.1"; Scaffold001 rebuild exon 4020046 4020117 . + . gene_id "RvY_01390"; transcript_id "RvY_01390.1"; Scaffold001 rebuild transcript 4020326 4021083 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.1"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[PTCB-BRCT] twin BRCT domain"; Scaffold001 rebuild exon 4020326 4020343 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.1"; Scaffold001 rebuild exon 4020403 4020510 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.1"; Scaffold001 rebuild exon 4020568 4020750 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.1"; Scaffold001 rebuild exon 4020826 4020975 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.1"; Scaffold001 rebuild exon 4021072 4021083 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.1"; Scaffold001 rebuild transcript 4020430 4021141 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.2"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[PTCB-BRCT] twin BRCT domain"; Scaffold001 rebuild exon 4020430 4020510 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.2"; Scaffold001 rebuild exon 4020568 4020750 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.2"; Scaffold001 rebuild exon 4020826 4020956 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.2"; Scaffold001 rebuild exon 4021072 4021141 . + . gene_id "RvY_01391"; transcript_id "RvY_01391.2"; Scaffold001 rebuild transcript 4021171 4021485 . - . gene_id "RvY_01392"; transcript_id "RvY_01392.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4021171 4021485 . - . gene_id "RvY_01392"; transcript_id "RvY_01392.1"; Scaffold001 rebuild transcript 4022147 4022927 . + . gene_id "RvY_01393"; transcript_id "RvY_01393.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4022147 4022300 . + . gene_id "RvY_01393"; transcript_id "RvY_01393.1"; Scaffold001 rebuild exon 4022361 4022411 . + . gene_id "RvY_01393"; transcript_id "RvY_01393.1"; Scaffold001 rebuild exon 4022584 4022927 . + . gene_id "RvY_01393"; transcript_id "RvY_01393.1"; Scaffold001 rebuild transcript 4023730 4023945 . + . gene_id "RvY_01394"; transcript_id "RvY_01394.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4023730 4023945 . + . gene_id "RvY_01394"; transcript_id "RvY_01394.1"; Scaffold001 rebuild transcript 4028320 4031555 . - . gene_id "RvY_01395"; transcript_id "RvY_01395.1"; product "Distalless (DLL)"; gene_name "DLX1_4_6"; annotation "Distalless (DLL)|putative Homeobox protein Dlx1a"; Pfam "[Homeobox]"; KO "K09314"; similar_genes "DLX1A_DANRE(e-value:6.0e-28;bit-score:122.0)"; Scaffold001 rebuild exon 4028320 4028841 . - . gene_id "RvY_01395"; transcript_id "RvY_01395.1"; Scaffold001 rebuild exon 4030264 4030454 . - . gene_id "RvY_01395"; transcript_id "RvY_01395.1"; Scaffold001 rebuild exon 4031258 4031555 . - . gene_id "RvY_01395"; transcript_id "RvY_01395.1"; Scaffold001 rebuild transcript 4033123 4033464 . - . gene_id "RvY_01396"; transcript_id "RvY_01396.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4033123 4033464 . - . gene_id "RvY_01396"; transcript_id "RvY_01396.1"; Scaffold001 rebuild transcript 4037359 4037715 . + . gene_id "RvY_01397"; transcript_id "RvY_01397.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4037359 4037715 . + . gene_id "RvY_01397"; transcript_id "RvY_01397.1"; Scaffold001 rebuild transcript 4040203 4040612 . - . gene_id "RvY_01398"; transcript_id "RvY_01398.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4040203 4040367 . - . gene_id "RvY_01398"; transcript_id "RvY_01398.1"; Scaffold001 rebuild exon 4040439 4040612 . - . gene_id "RvY_01398"; transcript_id "RvY_01398.1"; Scaffold001 rebuild transcript 4041268 4042787 . - . gene_id "RvY_01399"; transcript_id "RvY_01399.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4041268 4041479 . - . gene_id "RvY_01399"; transcript_id "RvY_01399.1"; Scaffold001 rebuild exon 4041701 4041842 . - . gene_id "RvY_01399"; transcript_id "RvY_01399.1"; Scaffold001 rebuild exon 4041909 4042169 . - . gene_id "RvY_01399"; transcript_id "RvY_01399.1"; Scaffold001 rebuild exon 4042704 4042787 . - . gene_id "RvY_01399"; transcript_id "RvY_01399.1"; Scaffold001 rebuild transcript 4041519 4042210 . + . gene_id "RvY_01400"; transcript_id "RvY_01400.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4041519 4041567 . + . gene_id "RvY_01400"; transcript_id "RvY_01400.1"; Scaffold001 rebuild exon 4041718 4041825 . + . gene_id "RvY_01400"; transcript_id "RvY_01400.1"; Scaffold001 rebuild exon 4041903 4041950 . + . gene_id "RvY_01400"; transcript_id "RvY_01400.1"; Scaffold001 rebuild exon 4042020 4042210 . + . gene_id "RvY_01400"; transcript_id "RvY_01400.1"; Scaffold001 rebuild transcript 4043517 4045763 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4043517 4043734 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4043799 4044212 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4044320 4044385 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4044602 4044694 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4044766 4044815 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4044980 4045239 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4045344 4045635 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild exon 4045720 4045763 . + . gene_id "RvY_01401"; transcript_id "RvY_01401.1"; Scaffold001 rebuild transcript 4046789 4048733 . + . gene_id "RvY_01402"; transcript_id "RvY_01402.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 4046789 4047500 . + . gene_id "RvY_01402"; transcript_id "RvY_01402.1"; Scaffold001 rebuild exon 4047592 4047955 . + . gene_id "RvY_01402"; transcript_id "RvY_01402.1"; Scaffold001 rebuild exon 4048016 4048278 . + . gene_id "RvY_01402"; transcript_id "RvY_01402.1"; Scaffold001 rebuild exon 4048336 4048493 . + . gene_id "RvY_01402"; transcript_id "RvY_01402.1"; Scaffold001 rebuild exon 4048572 4048733 . + . gene_id "RvY_01402"; transcript_id "RvY_01402.1"; Scaffold001 rebuild transcript 4048967 4049588 . - . gene_id "RvY_01403"; transcript_id "RvY_01403.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4048967 4049247 . - . gene_id "RvY_01403"; transcript_id "RvY_01403.1"; Scaffold001 rebuild exon 4049381 4049588 . - . gene_id "RvY_01403"; transcript_id "RvY_01403.1"; Scaffold001 rebuild transcript 4050180 4054633 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; gene_name "GLI"; annotation "Protein cubitus interruptus"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K06230"; similar_genes "CI_DROME(e-value:1.3e-78;bit-score:290.0)"; Scaffold001 rebuild exon 4050180 4050880 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4050968 4051213 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4051278 4051584 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4051680 4052039 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4052170 4052418 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4052494 4052658 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4052747 4053009 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4053078 4053377 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4053568 4053774 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4053855 4053965 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4054056 4054210 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4054348 4054474 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild exon 4054600 4054633 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.1"; Scaffold001 rebuild transcript 4050180 4054633 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; gene_name "GLI"; annotation "Protein cubitus interruptus"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K06230"; similar_genes "CI_DROME(e-value:1.3e-78;bit-score:290.0)"; Scaffold001 rebuild exon 4050180 4050880 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4050968 4051213 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4051278 4051584 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4051680 4052039 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4052170 4052418 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4052494 4052658 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4052747 4053009 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4053078 4053377 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4053568 4053774 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4053855 4053965 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4054056 4054207 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4054348 4054474 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild exon 4054600 4054633 . - . gene_id "RvY_01404"; transcript_id "RvY_01404.2"; Scaffold001 rebuild transcript 4054711 4060475 . - . gene_id "RvY_01405"; transcript_id "RvY_01405.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4054711 4054818 . - . gene_id "RvY_01405"; transcript_id "RvY_01405.1"; Scaffold001 rebuild exon 4060122 4060475 . - . gene_id "RvY_01405"; transcript_id "RvY_01405.1"; Scaffold001 rebuild transcript 4061329 4064839 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; gene_name "NT_PAP_TUTase"; annotation "hypothetical protein."; Pfam "[PAP_assoc] Cid1 family poly A polymerase"; CDD "Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved."; Scaffold001 rebuild exon 4061329 4061485 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4061556 4061856 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4062154 4062606 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4062863 4063224 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4063305 4063552 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4063610 4063840 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4063902 4064402 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4064466 4064662 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild exon 4064740 4064839 . - . gene_id "RvY_01406"; transcript_id "RvY_01406.1"; Scaffold001 rebuild transcript 4065588 4066749 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; gene_name "COG0724"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[zf-CCHC] Zinc knuckle|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA-binding proteins (RRM domain) [General function prediction only]"; similar_genes "GRP2B_ARATH(e-value:1.2e-15;bit-score:81.0)"; Scaffold001 rebuild exon 4065588 4065629 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; Scaffold001 rebuild exon 4065723 4065759 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; Scaffold001 rebuild exon 4065863 4065981 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; Scaffold001 rebuild exon 4066063 4066099 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; Scaffold001 rebuild exon 4066169 4066283 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; Scaffold001 rebuild exon 4066395 4066749 . - . gene_id "RvY_01407"; transcript_id "RvY_01407.4"; Scaffold001 rebuild transcript 4067485 4069793 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; annotation "hypothetical protein."; Pfam "[zf-CpG_bind_C] CpG binding protein zinc finger C terminal domain|[PHD] PHD-finger"; KO "K14960"; similar_genes "Y7446_DROME(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 4067485 4067594 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild exon 4067672 4067778 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild exon 4067842 4068404 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild exon 4068469 4068665 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild exon 4068730 4069051 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild exon 4069264 4069548 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild exon 4069629 4069793 . + . gene_id "RvY_01408"; transcript_id "RvY_01408.1"; Scaffold001 rebuild transcript 4070222 4071269 . - . gene_id "RvY_01409"; transcript_id "RvY_01409.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4070222 4070679 . - . gene_id "RvY_01409"; transcript_id "RvY_01409.1"; Scaffold001 rebuild exon 4070951 4071269 . - . gene_id "RvY_01409"; transcript_id "RvY_01409.1"; Scaffold001 rebuild transcript 4071406 4073517 . - . gene_id "RvY_01410"; transcript_id "RvY_01410.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4071406 4073517 . - . gene_id "RvY_01410"; transcript_id "RvY_01410.1"; Scaffold001 rebuild transcript 4074015 4075314 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M48] Peptidase family M48"; Scaffold001 rebuild exon 4074015 4074203 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; Scaffold001 rebuild exon 4074290 4074544 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; Scaffold001 rebuild exon 4074614 4074742 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; Scaffold001 rebuild exon 4074834 4074941 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; Scaffold001 rebuild exon 4075020 4075193 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; Scaffold001 rebuild exon 4075264 4075314 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.1"; Scaffold001 rebuild transcript 4074197 4075314 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.2"; annotation "hypothetical protein."; Pfam "[Peptidase_M48] Peptidase family M48"; Scaffold001 rebuild exon 4074197 4074544 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.2"; Scaffold001 rebuild exon 4074614 4074742 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.2"; Scaffold001 rebuild exon 4074834 4074941 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.2"; Scaffold001 rebuild exon 4075020 4075193 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.2"; Scaffold001 rebuild exon 4075264 4075314 . - . gene_id "RvY_01411"; transcript_id "RvY_01411.2"; Scaffold001 rebuild transcript 4076518 4079379 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GCY3E_DROME(e-value:1.1e-14;bit-score:78.0)"; Scaffold001 rebuild exon 4076518 4076701 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4076777 4076949 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4077020 4077239 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4077334 4077670 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4077741 4078062 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4078308 4078493 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4078919 4079065 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild exon 4079311 4079379 . - . gene_id "RvY_01412"; transcript_id "RvY_01412.1"; Scaffold001 rebuild transcript 4081137 4081896 . - . gene_id "RvY_01413"; transcript_id "RvY_01413.1"; gene_name "PRK06701"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.-.-.-"; similar_genes "YHXC_BACSU(e-value:2.1e-17;bit-score:87.0)"; Scaffold001 rebuild exon 4081137 4081525 . - . gene_id "RvY_01413"; transcript_id "RvY_01413.1"; Scaffold001 rebuild exon 4081557 4081896 . - . gene_id "RvY_01413"; transcript_id "RvY_01413.1"; Scaffold001 rebuild transcript 4082568 4084992 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; gene_name "SMOX"; annotation "spermine oxidase [EC:1.5.3.16]"; Pfam "[FAD_binding_2] FAD binding domain|[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[DAO] FAD dependent oxidoreductase|[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain|[HI0933_like] HI0933-like protein"; EC "EC1.-.-.-|EC1.5.3.16"; KO "K12259"; similar_genes "LSD1_CAEEL(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 4082568 4082733 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4082981 4083117 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4083188 4083381 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4083477 4083569 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4083755 4084196 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4084374 4084573 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4084641 4084779 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild exon 4084840 4084992 . + . gene_id "RvY_01414"; transcript_id "RvY_01414.1"; Scaffold001 rebuild transcript 4085483 4090508 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "SMAG1_XENTR(e-value:1.1e-14;bit-score:78.0)"; Scaffold001 rebuild exon 4085483 4085499 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4085796 4085885 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4085947 4086254 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4086310 4086511 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4086843 4087101 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4087188 4087297 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4087967 4088254 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4088583 4088969 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild exon 4090286 4090508 . - . gene_id "RvY_01415"; transcript_id "RvY_01415.1"; Scaffold001 rebuild transcript 4093875 4094042 . + . gene_id "RvY_01416"; transcript_id "RvY_01416.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4093875 4094042 . + . gene_id "RvY_01416"; transcript_id "RvY_01416.1"; Scaffold001 rebuild transcript 4095524 4096579 . + . gene_id "RvY_01417"; transcript_id "RvY_01417.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4095524 4095683 . + . gene_id "RvY_01417"; transcript_id "RvY_01417.1"; Scaffold001 rebuild exon 4095909 4096043 . + . gene_id "RvY_01417"; transcript_id "RvY_01417.1"; Scaffold001 rebuild exon 4096359 4096579 . + . gene_id "RvY_01417"; transcript_id "RvY_01417.1"; Scaffold001 rebuild transcript 4096666 4096887 . + . gene_id "RvY_01418"; transcript_id "RvY_01418.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4096666 4096887 . + . gene_id "RvY_01418"; transcript_id "RvY_01418.1"; Scaffold001 rebuild transcript 4096946 4097721 . - . gene_id "RvY_01419"; transcript_id "RvY_01419.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4096946 4097110 . - . gene_id "RvY_01419"; transcript_id "RvY_01419.1"; Scaffold001 rebuild exon 4097638 4097721 . - . gene_id "RvY_01419"; transcript_id "RvY_01419.1"; Scaffold001 rebuild transcript 4097791 4098240 . - . gene_id "RvY_01420"; transcript_id "RvY_01420.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4097791 4098240 . - . gene_id "RvY_01420"; transcript_id "RvY_01420.1"; Scaffold001 rebuild transcript 4098191 4102132 . + . gene_id "RvY_01421"; transcript_id "RvY_01421.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4098191 4098253 . + . gene_id "RvY_01421"; transcript_id "RvY_01421.1"; Scaffold001 rebuild exon 4101699 4101807 . + . gene_id "RvY_01421"; transcript_id "RvY_01421.1"; Scaffold001 rebuild exon 4101948 4102132 . + . gene_id "RvY_01421"; transcript_id "RvY_01421.1"; Scaffold001 rebuild transcript 4103124 4103846 . - . gene_id "RvY_01423"; transcript_id "RvY_01423.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4103124 4103138 . - . gene_id "RvY_01423"; transcript_id "RvY_01423.1"; Scaffold001 rebuild exon 4103210 4103320 . - . gene_id "RvY_01423"; transcript_id "RvY_01423.1"; Scaffold001 rebuild exon 4103375 4103564 . - . gene_id "RvY_01423"; transcript_id "RvY_01423.1"; Scaffold001 rebuild exon 4103632 4103846 . - . gene_id "RvY_01423"; transcript_id "RvY_01423.1"; Scaffold001 rebuild transcript 4104770 4104955 . - . gene_id "RvY_01424"; transcript_id "RvY_01424.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4104770 4104955 . - . gene_id "RvY_01424"; transcript_id "RvY_01424.1"; Scaffold001 rebuild transcript 4105063 4106242 . + . gene_id "RvY_01425"; transcript_id "RvY_01425.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4105063 4105221 . + . gene_id "RvY_01425"; transcript_id "RvY_01425.1"; Scaffold001 rebuild exon 4105281 4105664 . + . gene_id "RvY_01425"; transcript_id "RvY_01425.1"; Scaffold001 rebuild exon 4105841 4106242 . + . gene_id "RvY_01425"; transcript_id "RvY_01425.1"; Scaffold001 rebuild transcript 4106639 4107974 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 4106639 4106838 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.1"; Scaffold001 rebuild exon 4106955 4107090 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.1"; Scaffold001 rebuild exon 4107168 4107974 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.1"; Scaffold001 rebuild transcript 4106639 4107614 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 4106639 4106838 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.2"; Scaffold001 rebuild exon 4106955 4107090 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.2"; Scaffold001 rebuild exon 4107168 4107614 . - . gene_id "RvY_01426"; transcript_id "RvY_01426.2"; Scaffold001 rebuild transcript 4109266 4111311 . - . gene_id "RvY_01427"; transcript_id "RvY_01427.1"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold001 rebuild exon 4109266 4109997 . - . gene_id "RvY_01427"; transcript_id "RvY_01427.1"; Scaffold001 rebuild exon 4110069 4110710 . - . gene_id "RvY_01427"; transcript_id "RvY_01427.1"; Scaffold001 rebuild exon 4110780 4110984 . - . gene_id "RvY_01427"; transcript_id "RvY_01427.1"; Scaffold001 rebuild exon 4111065 4111109 . - . gene_id "RvY_01427"; transcript_id "RvY_01427.1"; Scaffold001 rebuild exon 4111169 4111311 . - . gene_id "RvY_01427"; transcript_id "RvY_01427.1"; Scaffold001 rebuild transcript 4112387 4113627 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4112387 4112698 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; Scaffold001 rebuild exon 4112765 4112849 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; Scaffold001 rebuild exon 4112928 4113011 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; Scaffold001 rebuild exon 4113077 4113106 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; Scaffold001 rebuild exon 4113210 4113504 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; Scaffold001 rebuild exon 4113564 4113627 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.1"; Scaffold001 rebuild transcript 4112806 4113853 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4112806 4112849 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; Scaffold001 rebuild exon 4112928 4113011 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; Scaffold001 rebuild exon 4113077 4113106 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; Scaffold001 rebuild exon 4113210 4113333 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; Scaffold001 rebuild exon 4113564 4113681 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; Scaffold001 rebuild exon 4113756 4113853 . - . gene_id "RvY_01428"; transcript_id "RvY_01428.2"; Scaffold001 rebuild transcript 4113935 4114615 . + . gene_id "RvY_01429"; transcript_id "RvY_01429.1"; annotation "hypothetical protein."; Pfam "[Dynein_light] Dynein light chain type 1"; Scaffold001 rebuild exon 4113935 4114077 . + . gene_id "RvY_01429"; transcript_id "RvY_01429.1"; Scaffold001 rebuild exon 4114145 4114478 . + . gene_id "RvY_01429"; transcript_id "RvY_01429.1"; Scaffold001 rebuild exon 4114541 4114615 . + . gene_id "RvY_01429"; transcript_id "RvY_01429.1"; Scaffold001 rebuild transcript 4115598 4118326 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; gene_name "PH"; annotation "hypothetical protein."; Pfam "[PH]"; CDD "Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids."; Scaffold001 rebuild exon 4115598 4115606 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; Scaffold001 rebuild exon 4115819 4116031 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; Scaffold001 rebuild exon 4116239 4116391 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; Scaffold001 rebuild exon 4116760 4116936 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; Scaffold001 rebuild exon 4117302 4117454 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; Scaffold001 rebuild exon 4117811 4118326 . + . gene_id "RvY_01430"; transcript_id "RvY_01430.1"; Scaffold001 rebuild transcript 4119082 4121170 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; gene_name "CDK6"; annotation "cyclin-dependent kinase 6 [EC:2.7.11.22]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation."; EC "EC2.7.11.22"; KO "K02091"; similar_genes "CDK4_HUMAN(e-value:1.3e-06;bit-score:51.0)"; Scaffold001 rebuild exon 4119082 4119255 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild exon 4119452 4119639 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild exon 4120002 4120146 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild exon 4120213 4120377 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild exon 4120491 4120651 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild exon 4120780 4120924 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild exon 4121000 4121170 . + . gene_id "RvY_01431"; transcript_id "RvY_01431.1"; Scaffold001 rebuild transcript 4121675 4122073 . - . gene_id "RvY_01432"; transcript_id "RvY_01432.1"; gene_name "NDUFB3"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUF_B12] NADH-ubiquinone oxidoreductase B12 subunit family"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03959"; Scaffold001 rebuild exon 4121675 4121888 . - . gene_id "RvY_01432"; transcript_id "RvY_01432.1"; Scaffold001 rebuild exon 4121952 4122073 . - . gene_id "RvY_01432"; transcript_id "RvY_01432.1"; Scaffold001 rebuild transcript 4121848 4122737 . + . gene_id "RvY_01433"; transcript_id "RvY_01433.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4121848 4122278 . + . gene_id "RvY_01433"; transcript_id "RvY_01433.1"; Scaffold001 rebuild exon 4122737 4122737 . + . gene_id "RvY_01433"; transcript_id "RvY_01433.1"; Scaffold001 rebuild transcript 4122852 4123185 . + . gene_id "RvY_01434"; transcript_id "RvY_01434.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4122852 4122899 . + . gene_id "RvY_01434"; transcript_id "RvY_01434.1"; Scaffold001 rebuild exon 4123102 4123185 . + . gene_id "RvY_01434"; transcript_id "RvY_01434.1"; Scaffold001 rebuild transcript 4123406 4124655 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4123406 4123599 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; Scaffold001 rebuild exon 4123712 4123768 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; Scaffold001 rebuild exon 4123967 4124078 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; Scaffold001 rebuild exon 4124200 4124278 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; Scaffold001 rebuild exon 4124347 4124369 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; Scaffold001 rebuild exon 4124446 4124655 . + . gene_id "RvY_01435"; transcript_id "RvY_01435.1"; Scaffold001 rebuild transcript 4125451 4126632 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4125451 4125602 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.1"; Scaffold001 rebuild exon 4125678 4125882 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.1"; Scaffold001 rebuild exon 4125961 4126632 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.1"; Scaffold001 rebuild transcript 4125451 4126540 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4125451 4125602 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.2"; Scaffold001 rebuild exon 4125678 4125882 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.2"; Scaffold001 rebuild exon 4125961 4126373 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.2"; Scaffold001 rebuild exon 4126435 4126540 . + . gene_id "RvY_01436"; transcript_id "RvY_01436.2"; Scaffold001 rebuild transcript 4126780 4127958 . - . gene_id "RvY_01437"; transcript_id "RvY_01437.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4126780 4127280 . - . gene_id "RvY_01437"; transcript_id "RvY_01437.1"; Scaffold001 rebuild exon 4127442 4127709 . - . gene_id "RvY_01437"; transcript_id "RvY_01437.1"; Scaffold001 rebuild exon 4127783 4127958 . - . gene_id "RvY_01437"; transcript_id "RvY_01437.1"; Scaffold001 rebuild transcript 4129349 4130674 . + . gene_id "RvY_01438"; transcript_id "RvY_01438.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4129349 4129468 . + . gene_id "RvY_01438"; transcript_id "RvY_01438.1"; Scaffold001 rebuild exon 4129560 4129629 . + . gene_id "RvY_01438"; transcript_id "RvY_01438.1"; Scaffold001 rebuild exon 4129706 4129921 . + . gene_id "RvY_01438"; transcript_id "RvY_01438.1"; Scaffold001 rebuild exon 4130016 4130674 . + . gene_id "RvY_01438"; transcript_id "RvY_01438.1"; Scaffold001 rebuild transcript 4130985 4132051 . - . gene_id "RvY_01439"; transcript_id "RvY_01439.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4130985 4131257 . - . gene_id "RvY_01439"; transcript_id "RvY_01439.1"; Scaffold001 rebuild exon 4131330 4131352 . - . gene_id "RvY_01439"; transcript_id "RvY_01439.1"; Scaffold001 rebuild exon 4131422 4131624 . - . gene_id "RvY_01439"; transcript_id "RvY_01439.1"; Scaffold001 rebuild exon 4131753 4132051 . - . gene_id "RvY_01439"; transcript_id "RvY_01439.1"; Scaffold001 rebuild transcript 4132760 4133428 . - . gene_id "RvY_01440"; transcript_id "RvY_01440.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4132760 4133135 . - . gene_id "RvY_01440"; transcript_id "RvY_01440.1"; Scaffold001 rebuild exon 4133220 4133428 . - . gene_id "RvY_01440"; transcript_id "RvY_01440.1"; Scaffold001 rebuild transcript 4134622 4135832 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "(1)GRP2_PHAVU(e-value:6.2e-15;bit-score:79.0)"; Scaffold001 rebuild exon 4134622 4135173 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.1"; Scaffold001 rebuild exon 4135322 4135414 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.1"; Scaffold001 rebuild exon 4135497 4135832 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.1"; Scaffold001 rebuild transcript 4134622 4135832 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "(1)GRP2_PHAVU(e-value:6.2e-15;bit-score:79.0)"; Scaffold001 rebuild exon 4134622 4134758 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.2"; Scaffold001 rebuild exon 4134879 4135173 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.2"; Scaffold001 rebuild exon 4135322 4135414 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.2"; Scaffold001 rebuild exon 4135497 4135832 . - . gene_id "RvY_01441"; transcript_id "RvY_01441.2"; Scaffold001 rebuild transcript 4137190 4144068 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; gene_name "NCAPD3"; annotation "condensin-2 complex subunit D3"; Pfam "[Cnd1] non-SMC mitotic condensation complex subunit 1"; KO "K11491"; Scaffold001 rebuild exon 4137190 4137262 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4137343 4137534 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4137594 4137694 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4137760 4137999 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4138083 4138172 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4138239 4138478 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4138618 4138666 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4138753 4138937 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4139175 4139325 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4139393 4139477 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4139540 4139631 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4139752 4140002 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4140170 4140510 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4140724 4141085 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4141144 4141689 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4141975 4142351 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4142430 4142733 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4142870 4143439 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild exon 4143701 4144068 . + . gene_id "RvY_01442"; transcript_id "RvY_01442.1"; Scaffold001 rebuild transcript 4144688 4145377 . - . gene_id "RvY_01443"; transcript_id "RvY_01443.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4144688 4144896 . - . gene_id "RvY_01443"; transcript_id "RvY_01443.1"; Scaffold001 rebuild exon 4144972 4145139 . - . gene_id "RvY_01443"; transcript_id "RvY_01443.1"; Scaffold001 rebuild exon 4145230 4145377 . - . gene_id "RvY_01443"; transcript_id "RvY_01443.1"; Scaffold001 rebuild transcript 4145686 4147114 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; annotation "putative Mitochondrial dicarboxylate carrier"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K13577"; similar_genes "DIC_HUMAN(e-value:1.8e-27;bit-score:120.0)"; Scaffold001 rebuild exon 4145686 4145823 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; Scaffold001 rebuild exon 4145885 4146004 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; Scaffold001 rebuild exon 4146160 4146558 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; Scaffold001 rebuild exon 4146639 4146719 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; Scaffold001 rebuild exon 4146780 4146836 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; Scaffold001 rebuild exon 4146923 4147114 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.1"; Scaffold001 rebuild transcript 4145785 4147114 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; annotation "putative Mitochondrial dicarboxylate carrier"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K13577"; similar_genes "DIC_HUMAN(e-value:1.8e-27;bit-score:120.0)"; Scaffold001 rebuild exon 4145785 4145823 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; Scaffold001 rebuild exon 4145885 4146004 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; Scaffold001 rebuild exon 4146160 4146558 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; Scaffold001 rebuild exon 4146639 4146719 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; Scaffold001 rebuild exon 4146780 4146836 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; Scaffold001 rebuild exon 4146923 4147114 . + . gene_id "RvY_01444"; transcript_id "RvY_01444.2"; Scaffold001 rebuild transcript 4148729 4149411 . + . gene_id "RvY_01445"; transcript_id "RvY_01445.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4148729 4149029 . + . gene_id "RvY_01445"; transcript_id "RvY_01445.1"; Scaffold001 rebuild exon 4149332 4149411 . + . gene_id "RvY_01445"; transcript_id "RvY_01445.1"; Scaffold001 rebuild transcript 4149494 4154809 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4149494 4149968 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; Scaffold001 rebuild exon 4150218 4151336 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; Scaffold001 rebuild exon 4151598 4152730 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; Scaffold001 rebuild exon 4152799 4153513 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; Scaffold001 rebuild exon 4153618 4154408 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; Scaffold001 rebuild exon 4154609 4154809 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.1"; Scaffold001 rebuild transcript 4149494 4152745 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4149494 4149968 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.2"; Scaffold001 rebuild exon 4150218 4151336 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.2"; Scaffold001 rebuild exon 4151598 4152745 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.2"; Scaffold001 rebuild transcript 4151699 4154414 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4151699 4152730 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.3"; Scaffold001 rebuild exon 4152799 4153513 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.3"; Scaffold001 rebuild exon 4153618 4154414 . + . gene_id "RvY_01446"; transcript_id "RvY_01446.3"; Scaffold001 rebuild transcript 4155069 4155332 . + . gene_id "RvY_01447"; transcript_id "RvY_01447.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4155069 4155332 . + . gene_id "RvY_01447"; transcript_id "RvY_01447.1"; Scaffold001 rebuild transcript 4155569 4157223 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; gene_name "PRK08303"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; Scaffold001 rebuild exon 4155569 4155594 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4155697 4155777 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4155847 4156093 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4156160 4156292 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4156424 4156644 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4156729 4156793 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4156960 4156990 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild exon 4157134 4157223 . - . gene_id "RvY_01448"; transcript_id "RvY_01448.1"; Scaffold001 rebuild transcript 4157781 4158281 . - . gene_id "RvY_01449"; transcript_id "RvY_01449.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4157781 4158117 . - . gene_id "RvY_01449"; transcript_id "RvY_01449.1"; Scaffold001 rebuild exon 4158190 4158281 . - . gene_id "RvY_01449"; transcript_id "RvY_01449.1"; Scaffold001 rebuild transcript 4158314 4159086 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.1"; gene_name "PP2Cc"; annotation "(1,2)putative Protein phosphatase 1B(3)hypothetical protein."; Pfam "[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "(1,2)EC3.1.3.16"; similar_genes "(1,2)PPM1B_BOVIN(e-value:1.2e-28;bit-score:124.0)"; Scaffold001 rebuild exon 4158314 4158511 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.1"; Scaffold001 rebuild exon 4158589 4159086 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.1"; Scaffold001 rebuild transcript 4158556 4159086 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.2"; gene_name "PP2Cc"; annotation "(1,2)putative Protein phosphatase 1B(3)hypothetical protein."; Pfam "[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "(1,2)EC3.1.3.16"; similar_genes "(1,2)PPM1B_BOVIN(e-value:1.2e-28;bit-score:124.0)"; Scaffold001 rebuild exon 4158556 4159086 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.2"; Scaffold001 rebuild transcript 4159020 4159599 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.3"; gene_name "PP2Cc"; annotation "(1,2)putative Protein phosphatase 1B(3)hypothetical protein."; Pfam "[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "(1,2)EC3.1.3.16"; similar_genes "(1,2)PPM1B_BOVIN(e-value:1.2e-28;bit-score:124.0)"; Scaffold001 rebuild exon 4159020 4159094 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.3"; Scaffold001 rebuild exon 4159201 4159599 . - . gene_id "RvY_01450"; transcript_id "RvY_01450.3"; Scaffold001 rebuild transcript 4159991 4160269 . - . gene_id "RvY_01451"; transcript_id "RvY_01451.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4159991 4160069 . - . gene_id "RvY_01451"; transcript_id "RvY_01451.1"; Scaffold001 rebuild exon 4160148 4160269 . - . gene_id "RvY_01451"; transcript_id "RvY_01451.1"; Scaffold001 rebuild transcript 4160421 4160612 . - . gene_id "RvY_01452"; transcript_id "RvY_01452.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4160421 4160612 . - . gene_id "RvY_01452"; transcript_id "RvY_01452.1"; Scaffold001 rebuild transcript 4161704 4162932 . + . gene_id "RvY_01453"; transcript_id "RvY_01453.1"; annotation "hypothetical protein."; similar_genes "LENG1_MOUSE(e-value:1.4e-16;bit-score:84.0)"; Scaffold001 rebuild exon 4161704 4161726 . + . gene_id "RvY_01453"; transcript_id "RvY_01453.1"; Scaffold001 rebuild exon 4161826 4161925 . + . gene_id "RvY_01453"; transcript_id "RvY_01453.1"; Scaffold001 rebuild exon 4162001 4162162 . + . gene_id "RvY_01453"; transcript_id "RvY_01453.1"; Scaffold001 rebuild exon 4162234 4162351 . + . gene_id "RvY_01453"; transcript_id "RvY_01453.1"; Scaffold001 rebuild exon 4162433 4162932 . + . gene_id "RvY_01453"; transcript_id "RvY_01453.1"; Scaffold001 rebuild transcript 4163179 4164503 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_17] Tetratricopeptide repeat"; similar_genes "RMD1_RAT(e-value:3.9e-25;bit-score:113.0)"; Scaffold001 rebuild exon 4163179 4163482 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; Scaffold001 rebuild exon 4163541 4163596 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; Scaffold001 rebuild exon 4163666 4163755 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; Scaffold001 rebuild exon 4163839 4164098 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; Scaffold001 rebuild exon 4164169 4164310 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; Scaffold001 rebuild exon 4164393 4164503 . - . gene_id "RvY_01454"; transcript_id "RvY_01454.1"; Scaffold001 rebuild transcript 4165204 4167171 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.1"; gene_name "COG3889"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[MACPF] MAC/Perforin domain|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 4165204 4165295 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.1"; Scaffold001 rebuild exon 4165374 4165729 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.1"; Scaffold001 rebuild exon 4166057 4167171 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.1"; Scaffold001 rebuild transcript 4165204 4167162 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.2"; gene_name "COG3889"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[MACPF] MAC/Perforin domain|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 4165204 4165295 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.2"; Scaffold001 rebuild exon 4165374 4165729 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.2"; Scaffold001 rebuild exon 4166057 4167162 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.2"; Scaffold001 rebuild transcript 4165204 4167156 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.3"; gene_name "COG3889"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[MACPF] MAC/Perforin domain|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:3.9e-08;bit-score:56.0)"; Scaffold001 rebuild exon 4165204 4165295 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.3"; Scaffold001 rebuild exon 4165374 4165729 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.3"; Scaffold001 rebuild exon 4166057 4167156 . - . gene_id "RvY_01455"; transcript_id "RvY_01455.3"; Scaffold001 rebuild transcript 4168645 4171559 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; gene_name "BI-1-like"; annotation "hypothetical protein."; Pfam "[Bax1-I] Inhibitor of apoptosis-promoting Bax1"; CDD "BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes."; similar_genes "TMBI1_HUMAN(e-value:4.7e-13;bit-score:72.0)"; Scaffold001 rebuild exon 4168645 4168794 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4168906 4168953 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4169031 4169138 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4169205 4169330 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4170826 4170970 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4171048 4171112 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4171192 4171421 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild exon 4171517 4171559 . - . gene_id "RvY_01456"; transcript_id "RvY_01456.1"; Scaffold001 rebuild transcript 4169768 4171125 . + . gene_id "RvY_01457"; transcript_id "RvY_01457.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4169768 4169864 . + . gene_id "RvY_01457"; transcript_id "RvY_01457.1"; Scaffold001 rebuild exon 4171037 4171125 . + . gene_id "RvY_01457"; transcript_id "RvY_01457.1"; Scaffold001 rebuild transcript 4173949 4177675 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; gene_name "COG5210"; annotation "hypothetical protein."; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain|[Rhodanese] Rhodanese-like domain"; CDD "GTPase-activating protein [General function prediction only]"; similar_genes "TBC23_PONAB(e-value:9.2e-14;bit-score:75.0)"; Scaffold001 rebuild exon 4173949 4174187 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4174281 4174389 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4174498 4174615 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4174674 4175005 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4175076 4175200 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4175270 4175316 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4175398 4175501 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4176335 4177239 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4177307 4177501 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild exon 4177573 4177675 . + . gene_id "RvY_01458"; transcript_id "RvY_01458.1"; Scaffold001 rebuild transcript 4179114 4179452 . - . gene_id "RvY_01459"; transcript_id "RvY_01459.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4179114 4179452 . - . gene_id "RvY_01459"; transcript_id "RvY_01459.1"; Scaffold001 rebuild transcript 4179499 4181806 . - . gene_id "RvY_01460"; transcript_id "RvY_01460.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_1_like] MFS_1 like family"; Scaffold001 rebuild exon 4179499 4179643 . - . gene_id "RvY_01460"; transcript_id "RvY_01460.1"; Scaffold001 rebuild exon 4179735 4180277 . - . gene_id "RvY_01460"; transcript_id "RvY_01460.1"; Scaffold001 rebuild exon 4180344 4181346 . - . gene_id "RvY_01460"; transcript_id "RvY_01460.1"; Scaffold001 rebuild exon 4181409 4181514 . - . gene_id "RvY_01460"; transcript_id "RvY_01460.1"; Scaffold001 rebuild exon 4181585 4181806 . - . gene_id "RvY_01460"; transcript_id "RvY_01460.1"; Scaffold001 rebuild transcript 4183593 4188444 . + . gene_id "RvY_01461"; transcript_id "RvY_01461.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4183593 4183705 . + . gene_id "RvY_01461"; transcript_id "RvY_01461.1"; Scaffold001 rebuild exon 4183826 4184089 . + . gene_id "RvY_01461"; transcript_id "RvY_01461.1"; Scaffold001 rebuild exon 4184370 4185007 . + . gene_id "RvY_01461"; transcript_id "RvY_01461.1"; Scaffold001 rebuild exon 4185108 4185956 . + . gene_id "RvY_01461"; transcript_id "RvY_01461.1"; Scaffold001 rebuild exon 4186367 4188444 . + . gene_id "RvY_01461"; transcript_id "RvY_01461.1"; Scaffold001 rebuild transcript 4188593 4189093 . - . gene_id "RvY_01462"; transcript_id "RvY_01462.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4188593 4189093 . - . gene_id "RvY_01462"; transcript_id "RvY_01462.1"; Scaffold001 rebuild transcript 4190277 4190612 . + . gene_id "RvY_01463"; transcript_id "RvY_01463.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4190277 4190612 . + . gene_id "RvY_01463"; transcript_id "RvY_01463.1"; Scaffold001 rebuild transcript 4192098 4195470 . + . gene_id "RvY_01464"; transcript_id "RvY_01464.1"; gene_name "Mucin"; annotation "hypothetical protein."; Pfam "[MACPF] MAC/Perforin domain"; CDD "Mucin-like glycoprotein. This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells."; Scaffold001 rebuild exon 4192098 4192171 . + . gene_id "RvY_01464"; transcript_id "RvY_01464.1"; Scaffold001 rebuild exon 4192310 4192649 . + . gene_id "RvY_01464"; transcript_id "RvY_01464.1"; Scaffold001 rebuild exon 4192734 4193759 . + . gene_id "RvY_01464"; transcript_id "RvY_01464.1"; Scaffold001 rebuild exon 4193830 4195470 . + . gene_id "RvY_01464"; transcript_id "RvY_01464.1"; Scaffold001 rebuild transcript 4195577 4196103 . - . gene_id "RvY_01465"; transcript_id "RvY_01465.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4195577 4195743 . - . gene_id "RvY_01465"; transcript_id "RvY_01465.1"; Scaffold001 rebuild exon 4195819 4195962 . - . gene_id "RvY_01465"; transcript_id "RvY_01465.1"; Scaffold001 rebuild exon 4196040 4196103 . - . gene_id "RvY_01465"; transcript_id "RvY_01465.1"; Scaffold001 rebuild transcript 4196586 4198959 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; gene_name "RecQ"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "RECQ4_MOUSE(e-value:6.7e-08;bit-score:55.0)"; Scaffold001 rebuild exon 4196586 4196748 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4196842 4196944 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4197024 4197108 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4197167 4197273 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4197351 4197509 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4197613 4197869 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4197939 4198174 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4198256 4198371 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4198522 4198611 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild exon 4198695 4198959 . - . gene_id "RvY_01466"; transcript_id "RvY_01466.1"; Scaffold001 rebuild transcript 4199720 4200967 . - . gene_id "RvY_01467"; transcript_id "RvY_01467.1"; annotation "hypothetical protein."; Pfam "[DUF883] Bacterial protein of unknown function (DUF883)"; Scaffold001 rebuild exon 4199720 4200298 . - . gene_id "RvY_01467"; transcript_id "RvY_01467.1"; Scaffold001 rebuild exon 4200393 4200446 . - . gene_id "RvY_01467"; transcript_id "RvY_01467.1"; Scaffold001 rebuild exon 4200554 4200967 . - . gene_id "RvY_01467"; transcript_id "RvY_01467.1"; Scaffold001 rebuild transcript 4202059 4202763 . + . gene_id "RvY_01468"; transcript_id "RvY_01468.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4202059 4202113 . + . gene_id "RvY_01468"; transcript_id "RvY_01468.1"; Scaffold001 rebuild exon 4202235 4202423 . + . gene_id "RvY_01468"; transcript_id "RvY_01468.1"; Scaffold001 rebuild exon 4202519 4202763 . + . gene_id "RvY_01468"; transcript_id "RvY_01468.1"; Scaffold001 rebuild transcript 4203445 4203793 . - . gene_id "RvY_01469"; transcript_id "RvY_01469.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4203445 4203618 . - . gene_id "RvY_01469"; transcript_id "RvY_01469.1"; Scaffold001 rebuild exon 4203731 4203793 . - . gene_id "RvY_01469"; transcript_id "RvY_01469.1"; Scaffold001 rebuild transcript 4207693 4209166 . + . gene_id "RvY_01470"; transcript_id "RvY_01470.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4207693 4207810 . + . gene_id "RvY_01470"; transcript_id "RvY_01470.1"; Scaffold001 rebuild exon 4207882 4208458 . + . gene_id "RvY_01470"; transcript_id "RvY_01470.1"; Scaffold001 rebuild exon 4208725 4209166 . + . gene_id "RvY_01470"; transcript_id "RvY_01470.1"; Scaffold001 rebuild transcript 4209287 4209703 . + . gene_id "RvY_01471"; transcript_id "RvY_01471.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4209287 4209703 . + . gene_id "RvY_01471"; transcript_id "RvY_01471.1"; Scaffold001 rebuild transcript 4210471 4210977 . - . gene_id "RvY_01472"; transcript_id "RvY_01472.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4210471 4210977 . - . gene_id "RvY_01472"; transcript_id "RvY_01472.1"; Scaffold001 rebuild transcript 4211003 4213604 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; gene_name "TGFBR1"; annotation "putative Activin receptor type-1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Activin_recp] Activin types I and II receptor domain|[TGF_beta_GS] Transforming growth factor beta type I GS-motif"; EC "EC2.7.11.30"; KO "K04674"; similar_genes "ACVR1_CHICK(e-value:3.2e-50;bit-score:196.0)"; Scaffold001 rebuild exon 4211003 4211131 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4211307 4211437 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4211506 4211787 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4211948 4212010 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4212081 4212191 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4212278 4212508 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4212566 4212796 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4212884 4213047 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4213282 4213390 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild exon 4213511 4213604 . - . gene_id "RvY_01473"; transcript_id "RvY_01473.1"; Scaffold001 rebuild transcript 4213608 4213921 . - . gene_id "RvY_01474"; transcript_id "RvY_01474.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4213608 4213674 . - . gene_id "RvY_01474"; transcript_id "RvY_01474.1"; Scaffold001 rebuild exon 4213773 4213921 . - . gene_id "RvY_01474"; transcript_id "RvY_01474.1"; Scaffold001 rebuild transcript 4214919 4216993 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 4214919 4215221 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild exon 4215478 4215831 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild exon 4216070 4216185 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild exon 4216261 4216351 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild exon 4216460 4216621 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild exon 4216687 4216836 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild exon 4216964 4216993 . - . gene_id "RvY_01475"; transcript_id "RvY_01475.1"; Scaffold001 rebuild transcript 4217945 4219566 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "(1)K15108"; similar_genes "TPC_BOVIN(e-value:5.1e-06;bit-score:49.0)"; Scaffold001 rebuild exon 4217945 4218056 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; Scaffold001 rebuild exon 4218292 4218505 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; Scaffold001 rebuild exon 4218630 4218813 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; Scaffold001 rebuild exon 4218905 4219078 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; Scaffold001 rebuild exon 4219169 4219219 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; Scaffold001 rebuild exon 4219330 4219566 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.1"; Scaffold001 rebuild transcript 4218186 4219566 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.2"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "(1)K15108"; similar_genes "TPC_BOVIN(e-value:5.1e-06;bit-score:49.0)"; Scaffold001 rebuild exon 4218186 4218505 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.2"; Scaffold001 rebuild exon 4218630 4218813 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.2"; Scaffold001 rebuild exon 4218905 4219078 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.2"; Scaffold001 rebuild exon 4219169 4219219 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.2"; Scaffold001 rebuild exon 4219330 4219566 . - . gene_id "RvY_01476"; transcript_id "RvY_01476.2"; Scaffold001 rebuild transcript 4220168 4221059 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.1"; gene_name "PDZ"; annotation "(1,2)Protein lin-7 homolog C(3)Protein lin-7 homolog B"; Pfam "(1,2)[L27]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; similar_genes "(1,2)LIN7C_MOUSE(e-value:1.7e-57;bit-score:220.0)(3)LIN7B_BOVIN(e-value:5.5e-52;bit-score:202.0)"; Scaffold001 rebuild exon 4220168 4220294 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.1"; Scaffold001 rebuild exon 4220392 4220546 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.1"; Scaffold001 rebuild exon 4220620 4220829 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.1"; Scaffold001 rebuild exon 4220898 4221059 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.1"; Scaffold001 rebuild transcript 4220121 4221059 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.2"; gene_name "PDZ"; annotation "(1,2)Protein lin-7 homolog C(3)Protein lin-7 homolog B"; Pfam "(1,2)[L27]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; similar_genes "(1,2)LIN7C_MOUSE(e-value:1.7e-57;bit-score:220.0)(3)LIN7B_BOVIN(e-value:5.5e-52;bit-score:202.0)"; Scaffold001 rebuild exon 4220121 4220157 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.2"; Scaffold001 rebuild exon 4220253 4220294 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.2"; Scaffold001 rebuild exon 4220392 4220546 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.2"; Scaffold001 rebuild exon 4220620 4220829 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.2"; Scaffold001 rebuild exon 4220898 4221059 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.2"; Scaffold001 rebuild transcript 4220479 4221059 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.3"; gene_name "PDZ"; annotation "(1,2)Protein lin-7 homolog C(3)Protein lin-7 homolog B"; Pfam "(1,2)[L27]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; similar_genes "(1,2)LIN7C_MOUSE(e-value:1.7e-57;bit-score:220.0)(3)LIN7B_BOVIN(e-value:5.5e-52;bit-score:202.0)"; Scaffold001 rebuild exon 4220479 4220829 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.3"; Scaffold001 rebuild exon 4220898 4221059 . + . gene_id "RvY_01477"; transcript_id "RvY_01477.3"; Scaffold001 rebuild transcript 4223140 4225784 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.1"; gene_name "(2)PRK13875"; annotation "hypothetical protein."; Pfam "[TMC]"; CDD "(2)conjugal transfer protein TrbL; Provisional"; Scaffold001 rebuild exon 4223140 4223390 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.1"; Scaffold001 rebuild exon 4223698 4224214 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.1"; Scaffold001 rebuild exon 4224282 4225447 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.1"; Scaffold001 rebuild exon 4225511 4225784 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.1"; Scaffold001 rebuild transcript 4223140 4225561 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.2"; gene_name "(2)PRK13875"; annotation "hypothetical protein."; Pfam "[TMC]"; CDD "(2)conjugal transfer protein TrbL; Provisional"; Scaffold001 rebuild exon 4223140 4223390 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.2"; Scaffold001 rebuild exon 4223698 4224214 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.2"; Scaffold001 rebuild exon 4224282 4225448 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.2"; Scaffold001 rebuild exon 4225511 4225561 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.2"; Scaffold001 rebuild transcript 4225068 4227212 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; gene_name "(2)PRK13875"; annotation "hypothetical protein."; Pfam "[TMC]"; CDD "(2)conjugal transfer protein TrbL; Provisional"; Scaffold001 rebuild exon 4225068 4225447 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild exon 4225511 4225729 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild exon 4225792 4226031 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild exon 4226128 4226250 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild exon 4226315 4226393 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild exon 4226461 4226587 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild exon 4226644 4227212 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.3"; Scaffold001 rebuild transcript 4222513 4224241 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.4"; gene_name "(2)PRK13875"; annotation "hypothetical protein."; Pfam "[TMC]"; CDD "(2)conjugal transfer protein TrbL; Provisional"; Scaffold001 rebuild exon 4222513 4222637 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.4"; Scaffold001 rebuild exon 4222723 4222798 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.4"; Scaffold001 rebuild exon 4222893 4223017 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.4"; Scaffold001 rebuild exon 4223088 4223390 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.4"; Scaffold001 rebuild exon 4223698 4224241 . + . gene_id "RvY_01478"; transcript_id "RvY_01478.4"; Scaffold001 rebuild transcript 4227498 4228172 . + . gene_id "RvY_01479"; transcript_id "RvY_01479.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4227498 4227603 . + . gene_id "RvY_01479"; transcript_id "RvY_01479.1"; Scaffold001 rebuild exon 4227683 4227841 . + . gene_id "RvY_01479"; transcript_id "RvY_01479.1"; Scaffold001 rebuild exon 4227925 4228172 . + . gene_id "RvY_01479"; transcript_id "RvY_01479.1"; Scaffold001 rebuild transcript 4228571 4234770 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; gene_name "Herpes_BLLF1"; annotation "hypothetical protein."; CDD "Herpes virus major outer envelope glycoprotein (BLLF1). This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo."; KO "K14317"; Scaffold001 rebuild exon 4228571 4228603 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4228669 4228798 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4228882 4229096 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4229176 4229414 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4229620 4230201 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4230315 4230819 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4231016 4231258 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4231411 4231816 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4231922 4232320 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4232548 4233945 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4234029 4234445 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild exon 4234505 4234770 . + . gene_id "RvY_01480"; transcript_id "RvY_01480.1"; Scaffold001 rebuild transcript 4236144 4239392 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; gene_name "eIF-39"; annotation "translation initiation factor eIF-3 subunit 9"; Pfam "[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]"; KO "K03253"; similar_genes "EIF3B_DROGR(e-value:2.4e-14;bit-score:77.0)"; Scaffold001 rebuild exon 4236144 4236261 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4236328 4236538 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4236810 4236929 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4237004 4237357 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4237443 4237583 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4237662 4237728 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4237796 4238159 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4238222 4238344 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4238448 4238526 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4238600 4238738 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4238857 4239060 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4239131 4239242 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild exon 4239310 4239392 . + . gene_id "RvY_01481"; transcript_id "RvY_01481.1"; Scaffold001 rebuild transcript 4241568 4243371 . + . gene_id "RvY_01482"; transcript_id "RvY_01482.1"; annotation "hypothetical protein."; Pfam "[Tmemb_cc2] Predicted transmembrane and coiled-coil 2 protein"; Scaffold001 rebuild exon 4241568 4241902 . + . gene_id "RvY_01482"; transcript_id "RvY_01482.1"; Scaffold001 rebuild exon 4242194 4242545 . + . gene_id "RvY_01482"; transcript_id "RvY_01482.1"; Scaffold001 rebuild exon 4242736 4243371 . + . gene_id "RvY_01482"; transcript_id "RvY_01482.1"; Scaffold001 rebuild transcript 4243555 4244299 . - . gene_id "RvY_01483"; transcript_id "RvY_01483.1"; gene_name "TIGR03438"; annotation "hypothetical protein."; Pfam "[DUF2260] Uncharacterized conserved protein (DUF2260)"; CDD "probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases"; Scaffold001 rebuild exon 4243555 4244091 . - . gene_id "RvY_01483"; transcript_id "RvY_01483.1"; Scaffold001 rebuild exon 4244105 4244299 . - . gene_id "RvY_01483"; transcript_id "RvY_01483.1"; Scaffold001 rebuild transcript 4245873 4246172 . - . gene_id "RvY_01484"; transcript_id "RvY_01484.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4245873 4246172 . - . gene_id "RvY_01484"; transcript_id "RvY_01484.1"; Scaffold001 rebuild transcript 4246706 4246945 . + . gene_id "RvY_01485"; transcript_id "RvY_01485.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4246706 4246945 . + . gene_id "RvY_01485"; transcript_id "RvY_01485.1"; Scaffold001 rebuild transcript 4247311 4247523 . - . gene_id "RvY_01486"; transcript_id "RvY_01486.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4247311 4247523 . - . gene_id "RvY_01486"; transcript_id "RvY_01486.1"; Scaffold001 rebuild transcript 4247820 4250828 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; gene_name "USP20_33"; annotation "ubiquitin carboxyl-terminal hydrolase 20/33 [EC:3.1.2.15]"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; EC "EC3.1.2.15"; KO "K11848"; Scaffold001 rebuild exon 4247820 4248099 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; Scaffold001 rebuild exon 4248317 4248724 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; Scaffold001 rebuild exon 4248907 4249523 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; Scaffold001 rebuild exon 4249820 4250448 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; Scaffold001 rebuild exon 4250600 4250744 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; Scaffold001 rebuild exon 4250811 4250828 . - . gene_id "RvY_01487"; transcript_id "RvY_01487.1"; Scaffold001 rebuild transcript 4253211 4255086 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; gene_name "MYLK"; annotation "putative Myosin light chain kinase family member 4"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1|EC2.7.11.18"; KO "K00907"; similar_genes "MYLK4_MOUSE(e-value:8.7e-42;bit-score:168.0)"; Scaffold001 rebuild exon 4253211 4253267 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4253338 4253451 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4253526 4253571 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4253639 4253791 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4253898 4254100 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4254195 4254333 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4254425 4254628 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4254706 4254802 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild exon 4255050 4255086 . - . gene_id "RvY_01488"; transcript_id "RvY_01488.1"; Scaffold001 rebuild transcript 4256483 4257023 . - . gene_id "RvY_01489"; transcript_id "RvY_01489.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain"; Scaffold001 rebuild exon 4256483 4256577 . - . gene_id "RvY_01489"; transcript_id "RvY_01489.1"; Scaffold001 rebuild exon 4256669 4256828 . - . gene_id "RvY_01489"; transcript_id "RvY_01489.1"; Scaffold001 rebuild exon 4256940 4257023 . - . gene_id "RvY_01489"; transcript_id "RvY_01489.1"; Scaffold001 rebuild transcript 4257629 4261237 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; gene_name "(1)ABCC5(2)MRP_assoc_pro"; annotation "(1)putative ABC transporter C family member 1(2)putative Canalicular multispecific organic anion transporter 1"; Pfam "(1)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(1)[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; KO "(1)K05668"; similar_genes "(1)ABCC1_DICDI(e-value:6.1e-47;bit-score:185.0)(2)MRP2_RABIT(e-value:1.2e-26;bit-score:118.0)"; Scaffold001 rebuild exon 4257629 4258239 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild exon 4258412 4258910 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild exon 4258983 4259363 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild exon 4259454 4259603 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild exon 4259673 4260153 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild exon 4260397 4261025 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild exon 4261115 4261237 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.1"; Scaffold001 rebuild transcript 4260393 4263174 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; gene_name "(1)ABCC5(2)MRP_assoc_pro"; annotation "(1)putative ABC transporter C family member 1(2)putative Canalicular multispecific organic anion transporter 1"; Pfam "(1)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(1)[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; KO "(1)K05668"; similar_genes "(1)ABCC1_DICDI(e-value:6.1e-47;bit-score:185.0)(2)MRP2_RABIT(e-value:1.2e-26;bit-score:118.0)"; Scaffold001 rebuild exon 4260393 4261025 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4261115 4261225 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4261721 4261954 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4262034 4262096 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4262280 4262586 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4262676 4262803 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4262877 4263024 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild exon 4263089 4263174 . - . gene_id "RvY_01490"; transcript_id "RvY_01490.2"; Scaffold001 rebuild transcript 4263444 4263695 . - . gene_id "RvY_01491"; transcript_id "RvY_01491.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4263444 4263695 . - . gene_id "RvY_01491"; transcript_id "RvY_01491.1"; Scaffold001 rebuild transcript 4265911 4272705 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; gene_name "SETD2"; annotation "putative Probable histone-lysine N-methyltransferase CG1716"; Pfam "[SET]|[WW]|[SRI] SRI (Set2 Rpb1 interacting) domain"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; EC "EC2.1.1.43"; KO "K11423"; similar_genes "C1716_DROME(e-value:5.1e-42;bit-score:169.0)"; Scaffold001 rebuild exon 4265911 4266093 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4266296 4266841 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4266992 4267118 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4267187 4267524 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4267750 4268178 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4268878 4269342 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4269609 4269854 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4269923 4270129 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4270206 4270407 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4270481 4270560 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4270651 4270825 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4270946 4271310 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4271520 4272079 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild exon 4272447 4272705 . - . gene_id "RvY_01492"; transcript_id "RvY_01492.1"; Scaffold001 rebuild transcript 4273270 4275550 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; gene_name "ATPeF1B"; annotation "ATP synthase subunit beta, mitochondrial"; Pfam "[ATP-synt_ab_C] ATP synthase alpha/beta chain, C terminal domain|[ATP-synt_ab_N] ATP synthase alpha/beta family, beta-barrel domain|[ATP-synt_ab] ATP synthase alpha/beta family, nucleotide-binding domain"; CDD "F0F1 ATP synthase subunit beta; Validated"; EC "EC3.6.3.14"; KO "K02133"; similar_genes "ATPB_DROME(e-value:1.0e-235;bit-score:812.0)"; Scaffold001 rebuild exon 4273270 4273351 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild exon 4273413 4273872 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild exon 4274059 4274365 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild exon 4274430 4274588 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild exon 4274651 4274773 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild exon 4274848 4275048 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild exon 4275236 4275550 . + . gene_id "RvY_01493"; transcript_id "RvY_01493.1"; Scaffold001 rebuild transcript 4277979 4280281 . + . gene_id "RvY_01494"; transcript_id "RvY_01494.1"; gene_name "FOXQ"; annotation "putative Forkhead box protein Q1"; Pfam "[Fork_head] Fork head domain"; KO "K09410"; similar_genes "FOXQ1_MOUSE(e-value:7.9e-47;bit-score:185.0)"; Scaffold001 rebuild exon 4277979 4278100 . + . gene_id "RvY_01494"; transcript_id "RvY_01494.1"; Scaffold001 rebuild exon 4278451 4278917 . + . gene_id "RvY_01494"; transcript_id "RvY_01494.1"; Scaffold001 rebuild exon 4279455 4280281 . + . gene_id "RvY_01494"; transcript_id "RvY_01494.1"; Scaffold001 rebuild transcript 4282515 4284599 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; gene_name "GuKc"; annotation "hypothetical protein."; Pfam "[Guanylate_kin] Guanylate kinase|[SH3_2] Variant SH3 domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions."; Scaffold001 rebuild exon 4282515 4282844 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild exon 4282944 4283146 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild exon 4283232 4283393 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild exon 4283480 4283669 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild exon 4283757 4283888 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild exon 4283976 4284124 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild exon 4284491 4284599 . - . gene_id "RvY_01495"; transcript_id "RvY_01495.1"; Scaffold001 rebuild transcript 4286258 4289140 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; gene_name "CBL"; annotation "E3 ubiquitin-protein ligase CBL"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[Cbl_N] CBL proto-oncogene N-terminal domain 1|[zf-RING_2] Ring finger domain|[Cbl_N2] CBL proto-oncogene N-terminus, EF hand-like domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[Cbl_N3] CBL proto-oncogene N-terminus, SH2-like domain"; CDD "CBL proto-oncogene N-terminal domain 1. Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated tyrosine residues. Cbl_N is comprised of 3 structural domains of which this is the first - a four helix bundle."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K04707"; similar_genes "CBL_HUMAN(e-value:4.4e-58;bit-score:222.0)"; Scaffold001 rebuild exon 4286258 4286452 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild exon 4286738 4287206 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild exon 4287462 4287599 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild exon 4287700 4287831 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild exon 4287936 4288082 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild exon 4288281 4288839 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild exon 4289077 4289140 . - . gene_id "RvY_01496"; transcript_id "RvY_01496.1"; Scaffold001 rebuild transcript 4289711 4291640 . + . gene_id "RvY_01497"; transcript_id "RvY_01497.1"; gene_name "WD40"; annotation "putative Retinoblastoma-binding protein 5"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14961"; similar_genes "RBBP5_HUMAN(e-value:2.1e-49;bit-score:193.0)"; Scaffold001 rebuild exon 4289711 4289741 . + . gene_id "RvY_01497"; transcript_id "RvY_01497.1"; Scaffold001 rebuild exon 4289842 4289870 . + . gene_id "RvY_01497"; transcript_id "RvY_01497.1"; Scaffold001 rebuild exon 4289977 4290290 . + . gene_id "RvY_01497"; transcript_id "RvY_01497.1"; Scaffold001 rebuild exon 4290383 4290664 . + . gene_id "RvY_01497"; transcript_id "RvY_01497.1"; Scaffold001 rebuild exon 4290866 4291640 . + . gene_id "RvY_01497"; transcript_id "RvY_01497.1"; Scaffold001 rebuild transcript 4292258 4293486 . + . gene_id "RvY_01498"; transcript_id "RvY_01498.1"; gene_name "fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "EC1.1.1.-"; similar_genes "S16C6_BOVIN(e-value:6.7e-25;bit-score:112.0)"; Scaffold001 rebuild exon 4292258 4292716 . + . gene_id "RvY_01498"; transcript_id "RvY_01498.1"; Scaffold001 rebuild exon 4292883 4293127 . + . gene_id "RvY_01498"; transcript_id "RvY_01498.1"; Scaffold001 rebuild exon 4293196 4293312 . + . gene_id "RvY_01498"; transcript_id "RvY_01498.1"; Scaffold001 rebuild exon 4293387 4293486 . + . gene_id "RvY_01498"; transcript_id "RvY_01498.1"; Scaffold001 rebuild transcript 4293687 4295242 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; gene_name "p23_mNUDC_like"; annotation "putative Nuclear migration protein nudC"; Pfam "[Nudc_N] N-terminal conserved domain of Nudc.|[CS]"; CDD "p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation."; similar_genes "NUDC_CHICK(e-value:1.9e-37;bit-score:153.0)"; Scaffold001 rebuild exon 4293687 4293738 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4293834 4293952 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4294040 4294249 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4294327 4294395 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4294468 4294575 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4294654 4294944 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4295019 4295096 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild exon 4295165 4295242 . - . gene_id "RvY_01499"; transcript_id "RvY_01499.1"; Scaffold001 rebuild transcript 4295658 4296289 . + . gene_id "RvY_01500"; transcript_id "RvY_01500.1"; gene_name "QCR8"; annotation "ubiquinol-cytochrome c reductase subunit 8 [EC:1.10.2.2]"; Pfam "[UcrQ] UcrQ family"; CDD "UcrQ family. The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This family represents the 9.5 kDa subunit of the complex."; EC "EC1.10.2.2"; KO "K00418"; Scaffold001 rebuild exon 4295658 4295844 . + . gene_id "RvY_01500"; transcript_id "RvY_01500.1"; Scaffold001 rebuild exon 4296096 4296289 . + . gene_id "RvY_01500"; transcript_id "RvY_01500.1"; Scaffold001 rebuild transcript 4296602 4298670 . - . gene_id "RvY_01501"; transcript_id "RvY_01501.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4296602 4297123 . - . gene_id "RvY_01501"; transcript_id "RvY_01501.1"; Scaffold001 rebuild exon 4297277 4297816 . - . gene_id "RvY_01501"; transcript_id "RvY_01501.1"; Scaffold001 rebuild exon 4297879 4298670 . - . gene_id "RvY_01501"; transcript_id "RvY_01501.1"; Scaffold001 rebuild transcript 4299140 4300218 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; gene_name "PCGF3"; annotation "polycomb group RING finger protein 3"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K11488"; similar_genes "PCGF3_XENTR(e-value:3.4e-24;bit-score:109.0)"; Scaffold001 rebuild exon 4299140 4299248 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; Scaffold001 rebuild exon 4299326 4299422 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; Scaffold001 rebuild exon 4299532 4299587 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; Scaffold001 rebuild exon 4299664 4299953 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; Scaffold001 rebuild exon 4300025 4300105 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; Scaffold001 rebuild exon 4300171 4300218 . + . gene_id "RvY_01502"; transcript_id "RvY_01502.1"; Scaffold001 rebuild transcript 4300963 4302363 . - . gene_id "RvY_01503"; transcript_id "RvY_01503.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold001 rebuild exon 4300963 4301731 . - . gene_id "RvY_01503"; transcript_id "RvY_01503.1"; Scaffold001 rebuild exon 4301872 4302030 . - . gene_id "RvY_01503"; transcript_id "RvY_01503.1"; Scaffold001 rebuild exon 4302143 4302363 . - . gene_id "RvY_01503"; transcript_id "RvY_01503.1"; Scaffold001 rebuild transcript 4304275 4307446 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; product "sid-1a"; annotation "sid-1a | putative SID1 transmembrane family member 1"; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; similar_genes "SIDT1_HUMAN(e-value:4.1e-31;bit-score:132.0)"; Scaffold001 rebuild exon 4304275 4304993 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; Scaffold001 rebuild exon 4305268 4305314 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; Scaffold001 rebuild exon 4305382 4306009 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; Scaffold001 rebuild exon 4306197 4306592 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; Scaffold001 rebuild exon 4306656 4306976 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; Scaffold001 rebuild exon 4307038 4307446 . - . gene_id "RvY_01504"; transcript_id "RvY_01504.1"; Scaffold001 rebuild transcript 4308080 4311345 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; gene_name "FBXO30"; annotation "F-box protein 30"; KO "K10307"; similar_genes "FBX30_MOUSE(e-value:7.9e-11;bit-score:65.0)"; Scaffold001 rebuild exon 4308080 4308346 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild exon 4308475 4308559 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild exon 4308721 4309522 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild exon 4309596 4309712 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild exon 4310513 4310727 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild exon 4310847 4310980 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild exon 4311064 4311345 . + . gene_id "RvY_01505"; transcript_id "RvY_01505.1"; Scaffold001 rebuild transcript 4312576 4315419 . - . gene_id "RvY_01506"; transcript_id "RvY_01506.1"; annotation "hypothetical protein."; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; similar_genes "SIDT1_MOUSE(e-value:5.8e-24;bit-score:109.0)"; Scaffold001 rebuild exon 4312576 4312768 . - . gene_id "RvY_01506"; transcript_id "RvY_01506.1"; Scaffold001 rebuild exon 4312835 4313135 . - . gene_id "RvY_01506"; transcript_id "RvY_01506.1"; Scaffold001 rebuild exon 4313214 4315419 . - . gene_id "RvY_01506"; transcript_id "RvY_01506.1"; Scaffold001 rebuild transcript 4315937 4318856 . - . gene_id "RvY_01507"; transcript_id "RvY_01507.1"; product "sid-1c"; annotation "sid-1c | putative SID1 transmembrane family member 1"; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; similar_genes "SIDT1_MOUSE(e-value:1.3e-27;bit-score:121.0)"; Scaffold001 rebuild exon 4315937 4316129 . - . gene_id "RvY_01507"; transcript_id "RvY_01507.1"; Scaffold001 rebuild exon 4316206 4316515 . - . gene_id "RvY_01507"; transcript_id "RvY_01507.1"; Scaffold001 rebuild exon 4316711 4318856 . - . gene_id "RvY_01507"; transcript_id "RvY_01507.1"; Scaffold001 rebuild transcript 4320214 4320426 . - . gene_id "RvY_01508"; transcript_id "RvY_01508.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4320214 4320426 . - . gene_id "RvY_01508"; transcript_id "RvY_01508.1"; Scaffold001 rebuild transcript 4320577 4321254 . - . gene_id "RvY_01509"; transcript_id "RvY_01509.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 4320577 4321254 . - . gene_id "RvY_01509"; transcript_id "RvY_01509.1"; Scaffold001 rebuild transcript 4322217 4324986 . - . gene_id "RvY_01510"; transcript_id "RvY_01510.1"; gene_name "RasGEF"; annotation "hypothetical protein."; Pfam "[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; Scaffold001 rebuild exon 4322217 4322741 . - . gene_id "RvY_01510"; transcript_id "RvY_01510.1"; Scaffold001 rebuild exon 4323009 4323394 . - . gene_id "RvY_01510"; transcript_id "RvY_01510.1"; Scaffold001 rebuild exon 4323726 4323993 . - . gene_id "RvY_01510"; transcript_id "RvY_01510.1"; Scaffold001 rebuild exon 4324510 4324986 . - . gene_id "RvY_01510"; transcript_id "RvY_01510.1"; Scaffold001 rebuild transcript 4325709 4326543 . - . gene_id "RvY_01511"; transcript_id "RvY_01511.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4325709 4326086 . - . gene_id "RvY_01511"; transcript_id "RvY_01511.1"; Scaffold001 rebuild exon 4326154 4326543 . - . gene_id "RvY_01511"; transcript_id "RvY_01511.1"; Scaffold001 rebuild transcript 4329005 4331900 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; annotation "hypothetical protein."; Pfam "[His_Phos_1] Histidine phosphatase superfamily (branch 1)"; similar_genes "UBS3A_DROME(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 4329005 4329345 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4329417 4329665 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4329938 4330156 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4330217 4330625 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4330849 4331144 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4331250 4331466 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4331534 4331774 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild exon 4331845 4331900 . - . gene_id "RvY_01512"; transcript_id "RvY_01512.1"; Scaffold001 rebuild transcript 4333279 4334012 . + . gene_id "RvY_01513"; transcript_id "RvY_01513.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4333279 4333360 . + . gene_id "RvY_01513"; transcript_id "RvY_01513.1"; Scaffold001 rebuild exon 4333423 4333584 . + . gene_id "RvY_01513"; transcript_id "RvY_01513.1"; Scaffold001 rebuild exon 4333696 4334012 . + . gene_id "RvY_01513"; transcript_id "RvY_01513.1"; Scaffold001 rebuild transcript 4335070 4339687 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GCYB1_BOVIN(e-value:3.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 4335070 4335499 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4335592 4335675 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4335747 4335817 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4335894 4335976 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4336715 4336772 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4336839 4337064 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4337128 4338103 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4338300 4338394 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4338478 4338551 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild exon 4339685 4339687 . - . gene_id "RvY_01514"; transcript_id "RvY_01514.1"; Scaffold001 rebuild transcript 4341032 4346849 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "(1,2)GCYB1_MOUSE(e-value:3.1e-14;bit-score:76.0)(3)GCYB1_MOUSE(e-value:1.0e-06;bit-score:51.0)"; Scaffold001 rebuild exon 4341032 4341410 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4341494 4341577 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4343500 4343533 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4343639 4343675 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4343798 4343947 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4344027 4344252 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4344506 4345481 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4345618 4345718 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4346533 4346606 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild exon 4346847 4346849 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.1"; Scaffold001 rebuild transcript 4341490 4345377 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "(1,2)GCYB1_MOUSE(e-value:3.1e-14;bit-score:76.0)(3)GCYB1_MOUSE(e-value:1.0e-06;bit-score:51.0)"; Scaffold001 rebuild exon 4341490 4341577 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; Scaffold001 rebuild exon 4343500 4343533 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; Scaffold001 rebuild exon 4343639 4343675 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; Scaffold001 rebuild exon 4343798 4343947 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; Scaffold001 rebuild exon 4344027 4344252 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; Scaffold001 rebuild exon 4344506 4345377 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.2"; Scaffold001 rebuild transcript 4344493 4345681 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.3"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "(1,2)GCYB1_MOUSE(e-value:3.1e-14;bit-score:76.0)(3)GCYB1_MOUSE(e-value:1.0e-06;bit-score:51.0)"; Scaffold001 rebuild exon 4344493 4345481 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.3"; Scaffold001 rebuild exon 4345618 4345681 . - . gene_id "RvY_01515"; transcript_id "RvY_01515.3"; Scaffold001 rebuild transcript 4347901 4349235 . + . gene_id "RvY_01516"; transcript_id "RvY_01516.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4347901 4348018 . + . gene_id "RvY_01516"; transcript_id "RvY_01516.1"; Scaffold001 rebuild exon 4348086 4348680 . + . gene_id "RvY_01516"; transcript_id "RvY_01516.1"; Scaffold001 rebuild exon 4348794 4349235 . + . gene_id "RvY_01516"; transcript_id "RvY_01516.1"; Scaffold001 rebuild transcript 4349356 4349772 . + . gene_id "RvY_01517"; transcript_id "RvY_01517.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4349356 4349772 . + . gene_id "RvY_01517"; transcript_id "RvY_01517.1"; Scaffold001 rebuild transcript 4350747 4354022 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; gene_name "RING"; annotation "putative RING finger protein 10"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)"; similar_genes "RNF10_XENLA(e-value:1.1e-37;bit-score:154.0)"; Scaffold001 rebuild exon 4350747 4351061 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4351136 4351376 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4351449 4351595 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4351695 4352080 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4352318 4352467 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4352532 4352933 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4353049 4353139 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4353200 4353641 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild exon 4353890 4354022 . - . gene_id "RvY_01518"; transcript_id "RvY_01518.1"; Scaffold001 rebuild transcript 4354541 4354756 . - . gene_id "RvY_01519"; transcript_id "RvY_01519.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4354541 4354756 . - . gene_id "RvY_01519"; transcript_id "RvY_01519.1"; Scaffold001 rebuild transcript 4354952 4357993 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GCYB1_MOUSE(e-value:2.8e-19;bit-score:93.0)"; Scaffold001 rebuild exon 4354952 4355258 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4355334 4355451 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4355516 4355552 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4355675 4355749 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4355871 4355918 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4355999 4356224 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4356493 4357456 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4357611 4357711 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4357774 4357847 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild exon 4357991 4357993 . - . gene_id "RvY_01520"; transcript_id "RvY_01520.1"; Scaffold001 rebuild transcript 4358691 4359029 . + . gene_id "RvY_01521"; transcript_id "RvY_01521.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4358691 4359029 . + . gene_id "RvY_01521"; transcript_id "RvY_01521.1"; Scaffold001 rebuild transcript 4359252 4362853 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 4359252 4359703 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4359782 4359900 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4360010 4360054 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4360119 4360274 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4360336 4360425 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4360489 4361399 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4361461 4361586 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4361656 4361944 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4362025 4362215 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4362314 4362415 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild exon 4362563 4362853 . + . gene_id "RvY_01522"; transcript_id "RvY_01522.1"; Scaffold001 rebuild transcript 4362028 4362733 . - . gene_id "RvY_01523"; transcript_id "RvY_01523.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4362028 4362150 . - . gene_id "RvY_01523"; transcript_id "RvY_01523.1"; Scaffold001 rebuild exon 4362557 4362733 . - . gene_id "RvY_01523"; transcript_id "RvY_01523.1"; Scaffold001 rebuild transcript 4361768 4362031 . - . gene_id "RvY_01523"; transcript_id "RvY_01523.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4361768 4362031 . - . gene_id "RvY_01523"; transcript_id "RvY_01523.2"; Scaffold001 rebuild transcript 4363637 4366095 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; gene_name "ECM27"; annotation "hypothetical protein."; Pfam "[Na_Ca_ex] Sodium/calcium exchanger protein"; CDD "Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]"; KO "K13754"; similar_genes "NCKX6_MOUSE(e-value:6.8e-10;bit-score:62.0)"; Scaffold001 rebuild exon 4363637 4363666 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4363739 4363897 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4363969 4364021 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4364083 4364140 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4364235 4364343 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4364404 4364649 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4364709 4364965 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4365053 4365191 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4365265 4365386 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4365445 4365598 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4365683 4365763 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild exon 4365851 4366095 . + . gene_id "RvY_01524"; transcript_id "RvY_01524.1"; Scaffold001 rebuild transcript 4367412 4367794 . - . gene_id "RvY_01525"; transcript_id "RvY_01525.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4367412 4367584 . - . gene_id "RvY_01525"; transcript_id "RvY_01525.1"; Scaffold001 rebuild exon 4367773 4367794 . - . gene_id "RvY_01525"; transcript_id "RvY_01525.1"; Scaffold001 rebuild transcript 4368557 4369015 . + . gene_id "RvY_01526"; transcript_id "RvY_01526.1"; annotation "hypothetical protein."; Pfam "[PP1_inhibitor] PKC-activated protein phosphatase-1 inhibitor"; Scaffold001 rebuild exon 4368557 4369015 . + . gene_id "RvY_01526"; transcript_id "RvY_01526.1"; Scaffold001 rebuild transcript 4369070 4369615 . - . gene_id "RvY_01527"; transcript_id "RvY_01527.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4369070 4369615 . - . gene_id "RvY_01527"; transcript_id "RvY_01527.1"; Scaffold001 rebuild transcript 4370475 4371399 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.1"; annotation "hypothetical protein."; Pfam "[14-3-3] 14-3-3 protein"; Scaffold001 rebuild exon 4370475 4370663 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.1"; Scaffold001 rebuild exon 4370730 4370943 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.1"; Scaffold001 rebuild exon 4371138 4371256 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.1"; Scaffold001 rebuild exon 4371334 4371399 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.1"; Scaffold001 rebuild transcript 4371134 4371730 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.2"; annotation "hypothetical protein."; Pfam "[14-3-3] 14-3-3 protein"; Scaffold001 rebuild exon 4371134 4371256 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.2"; Scaffold001 rebuild exon 4371329 4371730 . - . gene_id "RvY_01528"; transcript_id "RvY_01528.2"; Scaffold001 rebuild transcript 4372703 4374655 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; gene_name "RRM_2"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold001 rebuild exon 4372703 4372758 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; Scaffold001 rebuild exon 4372838 4373236 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; Scaffold001 rebuild exon 4373296 4373506 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; Scaffold001 rebuild exon 4373589 4373864 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; Scaffold001 rebuild exon 4373926 4374389 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; Scaffold001 rebuild exon 4374457 4374655 . - . gene_id "RvY_01529"; transcript_id "RvY_01529.1"; Scaffold001 rebuild transcript 4375028 4376108 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.1"; annotation "hypothetical protein."; Pfam "[Cnd1] non-SMC mitotic condensation complex subunit 1"; Scaffold001 rebuild exon 4375028 4375255 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.1"; Scaffold001 rebuild exon 4375334 4375710 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.1"; Scaffold001 rebuild exon 4375970 4376108 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.1"; Scaffold001 rebuild transcript 4376059 4376707 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.2"; annotation "hypothetical protein."; Pfam "[Cnd1] non-SMC mitotic condensation complex subunit 1"; Scaffold001 rebuild exon 4376059 4376525 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.2"; Scaffold001 rebuild exon 4376644 4376707 . - . gene_id "RvY_01530"; transcript_id "RvY_01530.2"; Scaffold001 rebuild transcript 4377136 4384041 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; gene_name "TyrKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[PBP_like_2] PBP superfamily domain|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; Scaffold001 rebuild exon 4377136 4377700 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4377936 4378375 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4378639 4379207 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4379998 4380251 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4380344 4380533 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4380611 4380796 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4380855 4381131 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4381326 4381823 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4382115 4382711 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4382978 4383419 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4383619 4383777 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild exon 4383857 4384041 . + . gene_id "RvY_01531"; transcript_id "RvY_01531.1"; Scaffold001 rebuild transcript 4384468 4392211 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; gene_name "MYSc"; annotation "putative Myosin-Ic-A"; Pfam "[Myosin_TH1] Myosin tail|[Myosin_head] Myosin head (motor domain)"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; similar_genes "MY1CA_XENLA(e-value:8.9e-27;bit-score:118.0)"; Scaffold001 rebuild exon 4384468 4384636 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4384696 4384823 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4384897 4385049 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4385164 4385299 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4385386 4385492 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4385573 4385704 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4385771 4386172 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4386388 4386585 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4386646 4386862 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4386929 4387062 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4387131 4387186 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4387248 4387560 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4387716 4387883 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4387976 4388128 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4388202 4388323 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4388386 4388533 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4388647 4388753 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4388966 4389064 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4389142 4389205 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4389275 4389426 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4389523 4389617 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4389707 4389825 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild exon 4392038 4392211 . - . gene_id "RvY_01532"; transcript_id "RvY_01532.1"; Scaffold001 rebuild transcript 4392272 4396415 . - . gene_id "RvY_01533"; transcript_id "RvY_01533.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4392272 4392567 . - . gene_id "RvY_01533"; transcript_id "RvY_01533.1"; Scaffold001 rebuild exon 4396403 4396415 . - . gene_id "RvY_01533"; transcript_id "RvY_01533.1"; Scaffold001 rebuild transcript 4396801 4400354 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; gene_name "3a0801s09"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat"; CDD "mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)."; Scaffold001 rebuild exon 4396801 4396987 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4397062 4397184 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4397597 4397700 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4397797 4398015 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4398504 4398641 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4398719 4398929 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4399030 4399163 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4399230 4399339 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4399426 4399552 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4399629 4399743 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4399819 4399883 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild exon 4399992 4400354 . - . gene_id "RvY_01534"; transcript_id "RvY_01534.1"; Scaffold001 rebuild transcript 4400827 4403342 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[SET]|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Pre-SET] Pre-SET motif|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold001 rebuild exon 4400827 4401068 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; Scaffold001 rebuild exon 4401138 4401466 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; Scaffold001 rebuild exon 4401542 4401723 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; Scaffold001 rebuild exon 4401829 4402200 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; Scaffold001 rebuild exon 4402420 4402557 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; Scaffold001 rebuild exon 4402614 4403342 . + . gene_id "RvY_01535"; transcript_id "RvY_01535.1"; Scaffold001 rebuild transcript 4403775 4404257 . - . gene_id "RvY_01536"; transcript_id "RvY_01536.1"; annotation "Propionyl-CoA carboxylase beta chain, mitochondrial"; Pfam "[Carboxyl_trans] Carboxyl transferase domain"; EC "EC6.4.1.3"; similar_genes "PCCB_PIG(e-value:9.5e-52;bit-score:201.0)"; Scaffold001 rebuild exon 4403775 4403941 . - . gene_id "RvY_01536"; transcript_id "RvY_01536.1"; Scaffold001 rebuild exon 4404002 4404257 . - . gene_id "RvY_01536"; transcript_id "RvY_01536.1"; Scaffold001 rebuild transcript 4405203 4405604 . - . gene_id "RvY_01537"; transcript_id "RvY_01537.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4405203 4405604 . - . gene_id "RvY_01537"; transcript_id "RvY_01537.1"; Scaffold001 rebuild transcript 4405773 4406039 . - . gene_id "RvY_01538"; transcript_id "RvY_01538.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4405773 4406039 . - . gene_id "RvY_01538"; transcript_id "RvY_01538.1"; Scaffold001 rebuild transcript 4406999 4408138 . + . gene_id "RvY_01539"; transcript_id "RvY_01539.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4406999 4407137 . + . gene_id "RvY_01539"; transcript_id "RvY_01539.1"; Scaffold001 rebuild exon 4407861 4408138 . + . gene_id "RvY_01539"; transcript_id "RvY_01539.1"; Scaffold001 rebuild transcript 4409331 4410909 . - . gene_id "RvY_01540"; transcript_id "RvY_01540.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; Scaffold001 rebuild exon 4409331 4410482 . - . gene_id "RvY_01540"; transcript_id "RvY_01540.1"; Scaffold001 rebuild exon 4410592 4410909 . - . gene_id "RvY_01540"; transcript_id "RvY_01540.1"; Scaffold001 rebuild transcript 4411866 4418358 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; gene_name "DGK"; annotation "Diacylglycerol kinase beta"; Pfam "[efhand] EF hand|[DAGK_cat] Diacylglycerol kinase catalytic domain|[EF_hand_3] EF hand|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[DAGK_acc] Diacylglycerol kinase accessory domain|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; EC "EC2.7.1.107"; KO "K00901"; similar_genes "DGKB_HUMAN(e-value:1.0e-116;bit-score:417.0)"; Scaffold001 rebuild exon 4411866 4412139 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4412222 4412342 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4412421 4412643 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4412704 4413065 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4413158 4413493 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4413836 4414367 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4414872 4414991 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4415145 4415339 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4416003 4416145 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4416231 4416515 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4416757 4417078 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4418066 4418145 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild exon 4418229 4418358 . - . gene_id "RvY_01541"; transcript_id "RvY_01541.1"; Scaffold001 rebuild transcript 4422070 4422315 . + . gene_id "RvY_01542"; transcript_id "RvY_01542.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4422070 4422315 . + . gene_id "RvY_01542"; transcript_id "RvY_01542.1"; Scaffold001 rebuild transcript 4425871 4426370 . + . gene_id "RvY_01543"; transcript_id "RvY_01543.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold001 rebuild exon 4425871 4426101 . + . gene_id "RvY_01543"; transcript_id "RvY_01543.1"; Scaffold001 rebuild exon 4426233 4426370 . + . gene_id "RvY_01543"; transcript_id "RvY_01543.1"; Scaffold001 rebuild transcript 4427110 4427655 . + . gene_id "RvY_01544"; transcript_id "RvY_01544.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4427110 4427655 . + . gene_id "RvY_01544"; transcript_id "RvY_01544.1"; Scaffold001 rebuild transcript 4428417 4428992 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4428417 4428519 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.1"; Scaffold001 rebuild exon 4428682 4428992 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.1"; Scaffold001 rebuild transcript 4428017 4428433 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4428017 4428259 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.2"; Scaffold001 rebuild exon 4428374 4428433 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.2"; Scaffold001 rebuild transcript 4428535 4428783 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4428535 4428783 . + . gene_id "RvY_01545"; transcript_id "RvY_01545.3"; Scaffold001 rebuild transcript 4429044 4429397 . - . gene_id "RvY_01546"; transcript_id "RvY_01546.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4429044 4429397 . - . gene_id "RvY_01546"; transcript_id "RvY_01546.1"; Scaffold001 rebuild transcript 4429660 4430211 . + . gene_id "RvY_01547"; transcript_id "RvY_01547.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4429660 4429726 . + . gene_id "RvY_01547"; transcript_id "RvY_01547.1"; Scaffold001 rebuild exon 4429819 4429989 . + . gene_id "RvY_01547"; transcript_id "RvY_01547.1"; Scaffold001 rebuild exon 4430111 4430211 . + . gene_id "RvY_01547"; transcript_id "RvY_01547.1"; Scaffold001 rebuild transcript 4429674 4431570 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; gene_name "(1,2)PX_SNX8_Mvp1p_like"; annotation "hypothetical protein."; Pfam "[PX]"; CDD "(1,2)The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles."; Scaffold001 rebuild exon 4429674 4429772 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4429835 4429987 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4430159 4430272 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4430347 4430415 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4430487 4430622 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4430725 4430764 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4430821 4431013 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4431075 4431305 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild exon 4431415 4431570 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.1"; Scaffold001 rebuild transcript 4430756 4431734 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.2"; gene_name "(1,2)PX_SNX8_Mvp1p_like"; annotation "hypothetical protein."; Pfam "[PX]"; CDD "(1,2)The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles."; Scaffold001 rebuild exon 4430756 4431013 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.2"; Scaffold001 rebuild exon 4431075 4431305 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.2"; Scaffold001 rebuild exon 4431420 4431734 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.2"; Scaffold001 rebuild transcript 4429799 4430998 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; gene_name "(1,2)PX_SNX8_Mvp1p_like"; annotation "hypothetical protein."; Pfam "[PX]"; CDD "(1,2)The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles."; Scaffold001 rebuild exon 4429799 4429987 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; Scaffold001 rebuild exon 4430159 4430272 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; Scaffold001 rebuild exon 4430347 4430415 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; Scaffold001 rebuild exon 4430487 4430622 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; Scaffold001 rebuild exon 4430725 4430764 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; Scaffold001 rebuild exon 4430821 4430998 . - . gene_id "RvY_01548"; transcript_id "RvY_01548.3"; Scaffold001 rebuild transcript 4432153 4438405 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold001 rebuild exon 4432153 4432216 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4432273 4432341 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4432432 4432589 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4432658 4432738 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4432817 4432903 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4432976 4433065 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4433137 4433319 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4433385 4433525 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4433613 4433834 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4433920 4434141 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4434464 4434718 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4434778 4435078 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4435143 4435517 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4435683 4436491 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4436565 4436690 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4436777 4437090 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4437169 4437336 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4437409 4437591 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4437782 4437819 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4437896 4437983 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4438078 4438131 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild exon 4438237 4438405 . + . gene_id "RvY_01549"; transcript_id "RvY_01549.1"; Scaffold001 rebuild transcript 4439843 4441359 . + . gene_id "RvY_01550"; transcript_id "RvY_01550.1"; gene_name "FOXF"; annotation "putative Forkhead box protein F2"; Pfam "[Fork_head] Fork head domain"; KO "K09399"; similar_genes "FOXF2_MOUSE(e-value:1.5e-43;bit-score:174.0)"; Scaffold001 rebuild exon 4439843 4440139 . + . gene_id "RvY_01550"; transcript_id "RvY_01550.1"; Scaffold001 rebuild exon 4440258 4440624 . + . gene_id "RvY_01550"; transcript_id "RvY_01550.1"; Scaffold001 rebuild exon 4440968 4441359 . + . gene_id "RvY_01550"; transcript_id "RvY_01550.1"; Scaffold001 rebuild transcript 4442973 4445131 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold001 rebuild exon 4442973 4443234 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4443411 4443454 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4443549 4443587 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4443651 4443725 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4443860 4444000 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4444315 4444545 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4444606 4444744 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4444805 4444898 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild exon 4444975 4445131 . + . gene_id "RvY_01551"; transcript_id "RvY_01551.1"; Scaffold001 rebuild transcript 4448541 4450080 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; gene_name "(1,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 4448541 4448604 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild exon 4448679 4448921 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild exon 4449050 4449093 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild exon 4449178 4449216 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild exon 4449428 4449502 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild exon 4449603 4449743 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild exon 4449826 4450080 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.1"; Scaffold001 rebuild transcript 4449877 4450594 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.2"; gene_name "(1,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 4449877 4450062 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.2"; Scaffold001 rebuild exon 4450136 4450274 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.2"; Scaffold001 rebuild exon 4450350 4450594 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.2"; Scaffold001 rebuild transcript 4449877 4450689 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.3"; gene_name "(1,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 4449877 4450062 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.3"; Scaffold001 rebuild exon 4450136 4450274 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.3"; Scaffold001 rebuild exon 4450350 4450443 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.3"; Scaffold001 rebuild exon 4450539 4450689 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.3"; Scaffold001 rebuild transcript 4449199 4450080 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.4"; gene_name "(1,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 4449199 4449216 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.4"; Scaffold001 rebuild exon 4449428 4449502 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.4"; Scaffold001 rebuild exon 4449603 4449743 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.4"; Scaffold001 rebuild exon 4449826 4450080 . + . gene_id "RvY_01552"; transcript_id "RvY_01552.4"; Scaffold001 rebuild transcript 4452466 4454194 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 4452466 4452957 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; Scaffold001 rebuild exon 4453039 4453201 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; Scaffold001 rebuild exon 4453295 4453376 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; Scaffold001 rebuild exon 4453437 4453716 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; Scaffold001 rebuild exon 4453829 4454016 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; Scaffold001 rebuild exon 4454086 4454194 . - . gene_id "RvY_01553"; transcript_id "RvY_01553.1"; Scaffold001 rebuild transcript 4456671 4457021 . - . gene_id "RvY_01554"; transcript_id "RvY_01554.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4456671 4457021 . - . gene_id "RvY_01554"; transcript_id "RvY_01554.1"; Scaffold001 rebuild transcript 4457442 4459440 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; gene_name "purB"; annotation "Adenylosuccinate lyase"; Pfam "[ADSL_C] Adenylosuccinate lyase C-terminus|[Lyase_1] Lyase"; CDD "Adenylsuccinate lyase_2: Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are Scaffold001 rebuild exon 4457442 4457543 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4457622 4457979 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4458081 4458298 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4458381 4458471 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4458539 4458757 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4458843 4458967 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4459026 4459229 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild exon 4459303 4459440 . - . gene_id "RvY_01555"; transcript_id "RvY_01555.1"; Scaffold001 rebuild transcript 4460139 4460617 . + . gene_id "RvY_01556"; transcript_id "RvY_01556.1"; gene_name "RBX2"; annotation "RING-box protein 2"; Pfam "[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-Apc11] Anaphase-promoting complex subunit 11 RING-H2 finger"; CDD "Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]"; KO "K10611"; similar_genes "RBX2_HUMAN(e-value:4.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 4460139 4460388 . + . gene_id "RvY_01556"; transcript_id "RvY_01556.1"; Scaffold001 rebuild exon 4460469 4460617 . + . gene_id "RvY_01556"; transcript_id "RvY_01556.1"; Scaffold001 rebuild transcript 4460788 4461528 . - . gene_id "RvY_01557"; transcript_id "RvY_01557.1"; annotation "hypothetical protein."; Pfam "[Scramblase]"; similar_genes "PLS1_RAT(e-value:7.8e-09;bit-score:58.0)"; Scaffold001 rebuild exon 4460788 4460811 . - . gene_id "RvY_01557"; transcript_id "RvY_01557.1"; Scaffold001 rebuild exon 4460874 4461047 . - . gene_id "RvY_01557"; transcript_id "RvY_01557.1"; Scaffold001 rebuild exon 4461079 4461270 . - . gene_id "RvY_01557"; transcript_id "RvY_01557.1"; Scaffold001 rebuild exon 4461349 4461528 . - . gene_id "RvY_01557"; transcript_id "RvY_01557.1"; Scaffold001 rebuild transcript 4462459 4462755 . - . gene_id "RvY_01558"; transcript_id "RvY_01558.1"; gene_name "Arl6"; annotation "hypothetical protein."; Pfam "[Arf] ADP-ribosylation factor family"; CDD "Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily."; Scaffold001 rebuild exon 4462459 4462755 . - . gene_id "RvY_01558"; transcript_id "RvY_01558.1"; Scaffold001 rebuild transcript 4462807 4463182 . - . gene_id "RvY_01559"; transcript_id "RvY_01559.1"; gene_name "Arl6"; annotation "hypothetical protein."; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[G-alpha] G-protein alpha subunit|[Miro] Miro-like protein|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily."; similar_genes "ARL6_CAEBR(e-value:6.6e-06;bit-score:49.0)"; Scaffold001 rebuild exon 4462807 4462944 . - . gene_id "RvY_01559"; transcript_id "RvY_01559.1"; Scaffold001 rebuild exon 4463018 4463182 . - . gene_id "RvY_01559"; transcript_id "RvY_01559.1"; Scaffold001 rebuild transcript 4464455 4465724 . - . gene_id "RvY_01560"; transcript_id "RvY_01560.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 4464455 4464922 . - . gene_id "RvY_01560"; transcript_id "RvY_01560.1"; Scaffold001 rebuild exon 4464990 4465218 . - . gene_id "RvY_01560"; transcript_id "RvY_01560.1"; Scaffold001 rebuild exon 4465307 4465441 . - . gene_id "RvY_01560"; transcript_id "RvY_01560.1"; Scaffold001 rebuild exon 4465504 4465724 . - . gene_id "RvY_01560"; transcript_id "RvY_01560.1"; Scaffold001 rebuild transcript 4466409 4467741 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; product "SAHS3"; annotation "SAHS_c2 | hypothetical protein."; Scaffold001 rebuild exon 4466409 4466465 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; Scaffold001 rebuild exon 4466550 4466651 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; Scaffold001 rebuild exon 4467192 4467305 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; Scaffold001 rebuild exon 4467385 4467428 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; Scaffold001 rebuild exon 4467488 4467580 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; Scaffold001 rebuild exon 4467711 4467741 . - . gene_id "RvY_01561"; transcript_id "RvY_01561.1"; Scaffold001 rebuild transcript 4468027 4469052 . - . gene_id "RvY_01562"; transcript_id "RvY_01562.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4468027 4468203 . - . gene_id "RvY_01562"; transcript_id "RvY_01562.1"; Scaffold001 rebuild exon 4468915 4469052 . - . gene_id "RvY_01562"; transcript_id "RvY_01562.1"; Scaffold001 rebuild transcript 4469018 4469375 . + . gene_id "RvY_01563"; transcript_id "RvY_01563.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4469018 4469203 . + . gene_id "RvY_01563"; transcript_id "RvY_01563.1"; Scaffold001 rebuild exon 4469316 4469375 . + . gene_id "RvY_01563"; transcript_id "RvY_01563.1"; Scaffold001 rebuild transcript 4469769 4471034 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; annotation "hypothetical protein."; Pfam "[PP28] Casein kinase substrate phosphoprotein PP28"; similar_genes "HAP28_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold001 rebuild exon 4469769 4469866 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; Scaffold001 rebuild exon 4469937 4470088 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; Scaffold001 rebuild exon 4470172 4470305 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; Scaffold001 rebuild exon 4470559 4470648 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; Scaffold001 rebuild exon 4470723 4470883 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; Scaffold001 rebuild exon 4471025 4471034 . - . gene_id "RvY_01564"; transcript_id "RvY_01564.1"; Scaffold001 rebuild transcript 4472631 4473365 . - . gene_id "RvY_01565"; transcript_id "RvY_01565.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 4472631 4472829 . - . gene_id "RvY_01565"; transcript_id "RvY_01565.1"; Scaffold001 rebuild exon 4472913 4472947 . - . gene_id "RvY_01565"; transcript_id "RvY_01565.1"; Scaffold001 rebuild exon 4473018 4473365 . - . gene_id "RvY_01565"; transcript_id "RvY_01565.1"; Scaffold001 rebuild transcript 4474679 4474909 . + . gene_id "RvY_01566"; transcript_id "RvY_01566.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4474679 4474909 . + . gene_id "RvY_01566"; transcript_id "RvY_01566.1"; Scaffold001 rebuild transcript 4475201 4478992 . + . gene_id "RvY_01567"; transcript_id "RvY_01567.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 4475201 4475489 . + . gene_id "RvY_01567"; transcript_id "RvY_01567.1"; Scaffold001 rebuild exon 4476681 4476825 . + . gene_id "RvY_01567"; transcript_id "RvY_01567.1"; Scaffold001 rebuild exon 4477029 4477170 . + . gene_id "RvY_01567"; transcript_id "RvY_01567.1"; Scaffold001 rebuild exon 4478177 4478992 . + . gene_id "RvY_01567"; transcript_id "RvY_01567.1"; Scaffold001 rebuild transcript 4480208 4481966 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; gene_name "PutP"; annotation "putative High-affinity choline transporter 1"; Pfam "[SSF] Sodium:solute symporter family"; CDD "Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]"; KO "K14387"; similar_genes "SC5A7_TORMA(e-value:1.3e-38;bit-score:157.0)"; Scaffold001 rebuild exon 4480208 4480340 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; Scaffold001 rebuild exon 4480406 4480554 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; Scaffold001 rebuild exon 4480622 4480771 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; Scaffold001 rebuild exon 4480830 4480959 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; Scaffold001 rebuild exon 4481032 4481255 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; Scaffold001 rebuild exon 4481325 4481966 . + . gene_id "RvY_01568"; transcript_id "RvY_01568.1"; Scaffold001 rebuild transcript 4482148 4483547 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; annotation "hypothetical protein."; Pfam "[DUF766]"; Scaffold001 rebuild exon 4482148 4482381 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; Scaffold001 rebuild exon 4482441 4482517 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; Scaffold001 rebuild exon 4482608 4482780 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; Scaffold001 rebuild exon 4482864 4483079 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; Scaffold001 rebuild exon 4483150 4483307 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; Scaffold001 rebuild exon 4483425 4483547 . - . gene_id "RvY_01569"; transcript_id "RvY_01569.1"; Scaffold001 rebuild transcript 4484035 4485928 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; gene_name "ALG12"; annotation "putative Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-mannosyltransferase"; Pfam "[Glyco_transf_22] Alg9-like mannosyltransferase family"; CDD "Alg9-like mannosyltransferase family. Members of this family are mannosyltransferase enzymes. At least some members are localized in endoplasmic reticulum and involved in GPI anchor biosynthesis."; EC "EC2.4.1.-|EC2.4.1.130"; KO "K03847"; similar_genes "ALG12_DROME(e-value:4.2e-35;bit-score:146.0)"; Scaffold001 rebuild exon 4484035 4484178 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild exon 4484242 4484377 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild exon 4484457 4484630 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild exon 4484699 4484997 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild exon 4485063 4485289 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild exon 4485374 4485604 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild exon 4485676 4485928 . + . gene_id "RvY_01570"; transcript_id "RvY_01570.1"; Scaffold001 rebuild transcript 4486277 4489306 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4486277 4486624 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4486826 4487338 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4487573 4487856 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4487935 4488119 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4488184 4488443 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4488524 4488753 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4488832 4488976 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild exon 4489085 4489306 . - . gene_id "RvY_01571"; transcript_id "RvY_01571.1"; Scaffold001 rebuild transcript 4490225 4491716 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; gene_name "DNAJC9"; annotation "DnaJ homolog subfamily C member 9"; Pfam "[DnaJ]"; KO "K09529"; Scaffold001 rebuild exon 4490225 4490318 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; Scaffold001 rebuild exon 4490387 4490539 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; Scaffold001 rebuild exon 4490645 4490761 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; Scaffold001 rebuild exon 4490869 4491080 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; Scaffold001 rebuild exon 4491198 4491561 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; Scaffold001 rebuild exon 4491631 4491716 . + . gene_id "RvY_01572"; transcript_id "RvY_01572.1"; Scaffold001 rebuild transcript 4492392 4494797 . + . gene_id "RvY_01573"; transcript_id "RvY_01573.1"; product "Ku70"; gene_name "XRCC6"; annotation "Ku70 | putative ATP-dependent DNA helicase 2 subunit 1"; Pfam "[Ku_C] Ku70/Ku80 C-terminal arm|[Ku] Ku70/Ku80 beta-barrel domain|[Ku_N] Ku70/Ku80 N-terminal alpha/beta domain"; CDD "ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast."; EC "EC3.6.1.-"; KO "K10884"; similar_genes "KU70_CHICK(e-value:3.2e-35;bit-score:146.0)"; Scaffold001 rebuild exon 4492392 4492625 . + . gene_id "RvY_01573"; transcript_id "RvY_01573.1"; Scaffold001 rebuild exon 4492684 4493024 . + . gene_id "RvY_01573"; transcript_id "RvY_01573.1"; Scaffold001 rebuild exon 4493186 4494035 . + . gene_id "RvY_01573"; transcript_id "RvY_01573.1"; Scaffold001 rebuild exon 4494246 4494647 . + . gene_id "RvY_01573"; transcript_id "RvY_01573.1"; Scaffold001 rebuild exon 4494708 4494797 . + . gene_id "RvY_01573"; transcript_id "RvY_01573.1"; Scaffold001 rebuild transcript 4495165 4501117 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; gene_name "REX1_like"; annotation "hypothetical protein."; Pfam "[AAA_11] AAA domain|[Viral_helicase1] Viral (Superfamily 1) RNA helicase|[AAA_12] AAA domain|[DUF2075] Uncharacterized conserved protein (DUF2075)|[AAA_19] Part of AAA domain|[AAA_30] AAA domain|[RNase_T] Exonuclease|[UPF1_Zn_bind] RNA helicase (UPF2 interacting domain)|[UvrD-helicase] UvrD/REP helicase N-terminal domain"; CDD "This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold001 rebuild exon 4495165 4495379 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4495665 4496381 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4496621 4497239 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4497520 4497797 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4497861 4498203 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4498455 4498805 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4499066 4499571 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4499831 4500071 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4500397 4500787 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4500893 4501003 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild exon 4501098 4501117 . - . gene_id "RvY_01574"; transcript_id "RvY_01574.1"; Scaffold001 rebuild transcript 4502161 4502442 . + . gene_id "RvY_01575"; transcript_id "RvY_01575.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4502161 4502442 . + . gene_id "RvY_01575"; transcript_id "RvY_01575.1"; Scaffold001 rebuild transcript 4502049 4502442 . + . gene_id "RvY_01575"; transcript_id "RvY_01575.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4502049 4502108 . + . gene_id "RvY_01575"; transcript_id "RvY_01575.2"; Scaffold001 rebuild exon 4502257 4502442 . + . gene_id "RvY_01575"; transcript_id "RvY_01575.2"; Scaffold001 rebuild transcript 4502586 4504231 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.1"; annotation "hypothetical protein."; Pfam "(1)[FAD_binding_2] FAD binding domain|(1)[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|(1)[DAO] FAD dependent oxidoreductase|[Amino_oxidase] Flavin containing amine oxidoreductase|(1)[NAD_binding_8] NAD(P)-binding Rossmann-like domain|(1)[HI0933_like] HI0933-like protein"; EC "(1)EC1.-.-.-"; similar_genes "(1)LSD1_CAEEL(e-value:5.8e-07;bit-score:52.0)"; Scaffold001 rebuild exon 4502586 4503267 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.1"; Scaffold001 rebuild exon 4503325 4503509 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.1"; Scaffold001 rebuild exon 4503589 4503755 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.1"; Scaffold001 rebuild exon 4503961 4504231 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.1"; Scaffold001 rebuild transcript 4502252 4503485 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.2"; annotation "hypothetical protein."; Pfam "(1)[FAD_binding_2] FAD binding domain|(1)[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|(1)[DAO] FAD dependent oxidoreductase|[Amino_oxidase] Flavin containing amine oxidoreductase|(1)[NAD_binding_8] NAD(P)-binding Rossmann-like domain|(1)[HI0933_like] HI0933-like protein"; EC "(1)EC1.-.-.-"; similar_genes "(1)LSD1_CAEEL(e-value:5.8e-07;bit-score:52.0)"; Scaffold001 rebuild exon 4502252 4502522 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.2"; Scaffold001 rebuild exon 4502590 4503267 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.2"; Scaffold001 rebuild exon 4503325 4503485 . - . gene_id "RvY_01576"; transcript_id "RvY_01576.2"; Scaffold001 rebuild transcript 4503635 4504086 . + . gene_id "RvY_01577"; transcript_id "RvY_01577.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4503635 4503770 . + . gene_id "RvY_01577"; transcript_id "RvY_01577.1"; Scaffold001 rebuild exon 4503971 4504086 . + . gene_id "RvY_01577"; transcript_id "RvY_01577.1"; Scaffold001 rebuild transcript 4504781 4506175 . - . gene_id "RvY_01578"; transcript_id "RvY_01578.1"; gene_name "CHRMN"; annotation "cholinergic receptor, invertebrate"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K04134"; similar_genes "ACM2_CAEEL(e-value:3.0e-10;bit-score:63.0)"; Scaffold001 rebuild exon 4504781 4506175 . - . gene_id "RvY_01578"; transcript_id "RvY_01578.1"; Scaffold001 rebuild transcript 4508957 4509250 . + . gene_id "RvY_01579"; transcript_id "RvY_01579.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4508957 4509250 . + . gene_id "RvY_01579"; transcript_id "RvY_01579.1"; Scaffold001 rebuild transcript 4510084 4510467 . + . gene_id "RvY_01580"; transcript_id "RvY_01580.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4510084 4510467 . + . gene_id "RvY_01580"; transcript_id "RvY_01580.1"; Scaffold001 rebuild transcript 4514238 4514441 . + . gene_id "RvY_01581"; transcript_id "RvY_01581.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4514238 4514441 . + . gene_id "RvY_01581"; transcript_id "RvY_01581.1"; Scaffold001 rebuild transcript 4516016 4517063 . - . gene_id "RvY_01582"; transcript_id "RvY_01582.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4516016 4516650 . - . gene_id "RvY_01582"; transcript_id "RvY_01582.1"; Scaffold001 rebuild exon 4516892 4517063 . - . gene_id "RvY_01582"; transcript_id "RvY_01582.1"; Scaffold001 rebuild transcript 4517981 4518208 . - . gene_id "RvY_01583"; transcript_id "RvY_01583.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4517981 4518208 . - . gene_id "RvY_01583"; transcript_id "RvY_01583.1"; Scaffold001 rebuild transcript 4518380 4520783 . - . gene_id "RvY_01584"; transcript_id "RvY_01584.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4518380 4518493 . - . gene_id "RvY_01584"; transcript_id "RvY_01584.1"; Scaffold001 rebuild exon 4520670 4520783 . - . gene_id "RvY_01584"; transcript_id "RvY_01584.1"; Scaffold001 rebuild transcript 4521088 4524819 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; annotation "Serine/threonine-protein phosphatase 4 regulatory subunit 3A"; Pfam "[SMK-1] Component of IIS longevity pathway SMK-1"; similar_genes "P4R3A_HUMAN(e-value:1.4e-69;bit-score:260.0)"; Scaffold001 rebuild exon 4521088 4521567 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; Scaffold001 rebuild exon 4521800 4522010 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; Scaffold001 rebuild exon 4522076 4522782 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; Scaffold001 rebuild exon 4523188 4523403 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; Scaffold001 rebuild exon 4523482 4524014 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; Scaffold001 rebuild exon 4524204 4524819 . - . gene_id "RvY_01585"; transcript_id "RvY_01585.1"; Scaffold001 rebuild transcript 4525698 4532379 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; gene_name "AGAP1_2_3"; annotation "putative Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[PH]|[Ras] Ras family|[Miro] Miro-like protein|[ArfGap] Putative GTPase activating protein for Arf|[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine."; KO "K12491"; similar_genes "(1)AGAP1_MOUSE(e-value:1.1e-50;bit-score:197.0)(2)AGAP1_MOUSE(e-value:4.0e-44;bit-score:176.0)"; Scaffold001 rebuild exon 4525698 4525914 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4527569 4527715 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4528465 4528550 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4528945 4529089 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4529424 4529965 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4530204 4530416 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4530481 4530802 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4530938 4531267 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4531341 4531458 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4531527 4531716 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild exon 4531915 4532379 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.1"; Scaffold001 rebuild transcript 4527015 4532379 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; gene_name "AGAP1_2_3"; annotation "putative Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[PH]|[Ras] Ras family|[Miro] Miro-like protein|[ArfGap] Putative GTPase activating protein for Arf|[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine."; KO "K12491"; similar_genes "(1)AGAP1_MOUSE(e-value:1.1e-50;bit-score:197.0)(2)AGAP1_MOUSE(e-value:4.0e-44;bit-score:176.0)"; Scaffold001 rebuild exon 4527015 4527039 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4527569 4527715 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4528465 4528550 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4528945 4529089 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4529424 4529965 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4530204 4530416 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4530481 4530802 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4530938 4531267 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4531341 4531458 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4531527 4531716 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild exon 4531915 4532379 . + . gene_id "RvY_01586"; transcript_id "RvY_01586.2"; Scaffold001 rebuild transcript 4533657 4535014 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; gene_name "K06890"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[Bax1-I] Inhibitor of apoptosis-promoting Bax1"; CDD "BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes."; KO "K06890"; similar_genes "GRINA_BOVIN(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 4533657 4533762 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4533863 4533941 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4534023 4534076 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4534165 4534255 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4534354 4534391 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4534466 4534691 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4534784 4534883 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild exon 4534962 4535014 . + . gene_id "RvY_01587"; transcript_id "RvY_01587.1"; Scaffold001 rebuild transcript 4536066 4536446 . - . gene_id "RvY_01588"; transcript_id "RvY_01588.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4536066 4536446 . - . gene_id "RvY_01588"; transcript_id "RvY_01588.3"; Scaffold001 rebuild transcript 4536066 4536371 . - . gene_id "RvY_01588"; transcript_id "RvY_01588.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4536066 4536371 . - . gene_id "RvY_01588"; transcript_id "RvY_01588.4"; Scaffold001 rebuild transcript 4538343 4540119 . + . gene_id "RvY_01589"; transcript_id "RvY_01589.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4538343 4538546 . + . gene_id "RvY_01589"; transcript_id "RvY_01589.1"; Scaffold001 rebuild exon 4538820 4539429 . + . gene_id "RvY_01589"; transcript_id "RvY_01589.1"; Scaffold001 rebuild exon 4539653 4540119 . + . gene_id "RvY_01589"; transcript_id "RvY_01589.1"; Scaffold001 rebuild transcript 4540538 4540705 . + . gene_id "RvY_01590"; transcript_id "RvY_01590.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4540538 4540705 . + . gene_id "RvY_01590"; transcript_id "RvY_01590.1"; Scaffold001 rebuild transcript 4545983 4547930 . + . gene_id "RvY_01591"; transcript_id "RvY_01591.1"; gene_name "U2AF2"; annotation "putative Splicing factor U2AF 50 kDa subunit"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi."; KO "K12837"; similar_genes "U2AF2_DROME(e-value:4.0e-46;bit-score:182.0)"; Scaffold001 rebuild exon 4545983 4546389 . + . gene_id "RvY_01591"; transcript_id "RvY_01591.1"; Scaffold001 rebuild exon 4546481 4546895 . + . gene_id "RvY_01591"; transcript_id "RvY_01591.1"; Scaffold001 rebuild exon 4547205 4547930 . + . gene_id "RvY_01591"; transcript_id "RvY_01591.1"; Scaffold001 rebuild transcript 4548712 4549365 . - . gene_id "RvY_01592"; transcript_id "RvY_01592.1"; gene_name "NOG"; annotation "noggin"; Pfam "[Noggin]"; CDD "Noggin. This family consists of the eukaryotic Noggin proteins. Noggin is a glycoprotein that binds bone morphogenetic proteins (BMPs) selectively and, when added to osteoblasts, it opposes the effects of BMPs. It has been found that noggin arrests the differentiation of stromal cells, preventing cellular maturation."; KO "K04658"; Scaffold001 rebuild exon 4548712 4549365 . - . gene_id "RvY_01592"; transcript_id "RvY_01592.1"; Scaffold001 rebuild transcript 4551138 4553043 . - . gene_id "RvY_01593"; transcript_id "RvY_01593.1"; gene_name "SFRP5"; annotation "secreted frizzled-related protein 5"; Pfam "[Fz]"; CDD "Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs."; KO "K02222"; similar_genes "SFRP2_MOUSE(e-value:2.1e-15;bit-score:80.0)"; Scaffold001 rebuild exon 4551138 4551580 . - . gene_id "RvY_01593"; transcript_id "RvY_01593.1"; Scaffold001 rebuild exon 4551643 4551879 . - . gene_id "RvY_01593"; transcript_id "RvY_01593.1"; Scaffold001 rebuild exon 4552036 4552269 . - . gene_id "RvY_01593"; transcript_id "RvY_01593.1"; Scaffold001 rebuild exon 4552509 4553043 . - . gene_id "RvY_01593"; transcript_id "RvY_01593.1"; Scaffold001 rebuild transcript 4554536 4559912 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; gene_name "C2"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles."; Scaffold001 rebuild exon 4554536 4555065 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4555132 4555174 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4555459 4555607 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4555692 4555803 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4555883 4556010 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4556077 4556141 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4556253 4556364 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4556431 4556557 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4556679 4556861 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4557187 4557501 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4557588 4557683 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild exon 4559313 4559912 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.1"; Scaffold001 rebuild transcript 4554536 4559912 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; gene_name "C2"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles."; Scaffold001 rebuild exon 4554536 4554654 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4554751 4555065 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4555132 4555174 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4555459 4555607 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4555692 4555803 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4555883 4556010 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4556077 4556141 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4556253 4556364 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4556431 4556557 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4556679 4556861 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4557187 4557501 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4557588 4557683 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild exon 4559313 4559912 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.2"; Scaffold001 rebuild transcript 4555429 4559912 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; gene_name "C2"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles."; Scaffold001 rebuild exon 4555429 4555607 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4555692 4555803 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4555883 4556010 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4556077 4556141 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4556253 4556364 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4556431 4556557 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4556679 4556861 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4557187 4557501 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4557588 4557683 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild exon 4559313 4559912 . - . gene_id "RvY_01594"; transcript_id "RvY_01594.3"; Scaffold001 rebuild transcript 4562308 4564503 . - . gene_id "RvY_01595"; transcript_id "RvY_01595.1"; gene_name "PROP1"; annotation "homeobox protein prophet of Pit-1"; Pfam "[Homeobox]"; KO "K09327"; similar_genes "PAX7_HUMAN(e-value:3.2e-18;bit-score:90.0)"; Scaffold001 rebuild exon 4562308 4562787 . - . gene_id "RvY_01595"; transcript_id "RvY_01595.1"; Scaffold001 rebuild exon 4564354 4564503 . - . gene_id "RvY_01595"; transcript_id "RvY_01595.1"; Scaffold001 rebuild transcript 4567724 4569962 . + . gene_id "RvY_01596"; transcript_id "RvY_01596.1"; annotation "hypothetical protein."; Pfam "[Ank_2] Ankyrin repeats (3 copies)"; Scaffold001 rebuild exon 4567724 4568074 . + . gene_id "RvY_01596"; transcript_id "RvY_01596.1"; Scaffold001 rebuild exon 4568367 4568757 . + . gene_id "RvY_01596"; transcript_id "RvY_01596.1"; Scaffold001 rebuild exon 4568812 4569351 . + . gene_id "RvY_01596"; transcript_id "RvY_01596.1"; Scaffold001 rebuild exon 4569544 4569962 . + . gene_id "RvY_01596"; transcript_id "RvY_01596.1"; Scaffold001 rebuild transcript 4572006 4572263 . - . gene_id "RvY_01597"; transcript_id "RvY_01597.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4572006 4572263 . - . gene_id "RvY_01597"; transcript_id "RvY_01597.1"; Scaffold001 rebuild transcript 4577623 4580233 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; gene_name "PCBP2_3_4"; annotation "poly(rC)-binding protein 2/3/4"; Pfam "[KH_4] KH domain|[KH_2] KH domain|[KH_3] KH domain|[KH_1] KH domain"; CDD "K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA."; KO "K13162"; similar_genes "PCBP3_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold001 rebuild exon 4577623 4577718 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4578182 4578205 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4578352 4578384 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4578540 4578656 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4578741 4578887 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4579014 4579142 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4579214 4579547 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild exon 4579884 4580233 . + . gene_id "RvY_01598"; transcript_id "RvY_01598.1"; Scaffold001 rebuild transcript 4580698 4582181 . - . gene_id "RvY_01599"; transcript_id "RvY_01599.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4580698 4581035 . - . gene_id "RvY_01599"; transcript_id "RvY_01599.1"; Scaffold001 rebuild exon 4581244 4581727 . - . gene_id "RvY_01599"; transcript_id "RvY_01599.1"; Scaffold001 rebuild exon 4581804 4582181 . - . gene_id "RvY_01599"; transcript_id "RvY_01599.1"; Scaffold001 rebuild transcript 4582944 4583998 . + . gene_id "RvY_01600"; transcript_id "RvY_01600.1"; gene_name "RP-L10e"; annotation "60S ribosomal protein L10"; Pfam "[Ribosomal_L16] Ribosomal protein L16p/L10e"; CDD "60S ribosomal protein L10; Provisional"; KO "K02866"; similar_genes "RL10_DROME(e-value:1.4e-101;bit-score:367.0)"; Scaffold001 rebuild exon 4582944 4582966 . + . gene_id "RvY_01600"; transcript_id "RvY_01600.1"; Scaffold001 rebuild exon 4583041 4583099 . + . gene_id "RvY_01600"; transcript_id "RvY_01600.1"; Scaffold001 rebuild exon 4583203 4583449 . + . gene_id "RvY_01600"; transcript_id "RvY_01600.1"; Scaffold001 rebuild exon 4583514 4583676 . + . gene_id "RvY_01600"; transcript_id "RvY_01600.1"; Scaffold001 rebuild exon 4583828 4583998 . + . gene_id "RvY_01600"; transcript_id "RvY_01600.1"; Scaffold001 rebuild transcript 4584335 4586652 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; gene_name "PDEase_I"; annotation "High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A"; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.35"; KO "(1)K13761"; similar_genes "PDE9A_HUMAN(e-value:5.6e-88;bit-score:321.0)"; Scaffold001 rebuild exon 4584335 4584385 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4584447 4584770 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4585046 4585316 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4585403 4585590 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4585857 4585943 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4586154 4586228 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4586298 4586352 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild exon 4586603 4586652 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.1"; Scaffold001 rebuild transcript 4585013 4586652 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; gene_name "PDEase_I"; annotation "High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A"; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.35"; KO "(1)K13761"; similar_genes "PDE9A_HUMAN(e-value:5.6e-88;bit-score:321.0)"; Scaffold001 rebuild exon 4585013 4585316 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; Scaffold001 rebuild exon 4585403 4585590 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; Scaffold001 rebuild exon 4585857 4585943 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; Scaffold001 rebuild exon 4586154 4586228 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; Scaffold001 rebuild exon 4586298 4586352 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; Scaffold001 rebuild exon 4586603 4586652 . - . gene_id "RvY_01601"; transcript_id "RvY_01601.2"; Scaffold001 rebuild transcript 4587285 4588580 . - . gene_id "RvY_01602"; transcript_id "RvY_01602.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4587285 4587549 . - . gene_id "RvY_01602"; transcript_id "RvY_01602.1"; Scaffold001 rebuild exon 4588112 4588182 . - . gene_id "RvY_01602"; transcript_id "RvY_01602.1"; Scaffold001 rebuild exon 4588512 4588580 . - . gene_id "RvY_01602"; transcript_id "RvY_01602.1"; Scaffold001 rebuild transcript 4590647 4593392 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; gene_name "WDR42A"; annotation "WD repeat-containing protein 42A"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11804"; similar_genes "DC8L1_XENTR(e-value:1.0e-12;bit-score:71.0)"; Scaffold001 rebuild exon 4590647 4590721 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4590788 4590970 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4591045 4591164 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4591345 4591595 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4591786 4591919 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4592010 4592224 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4592328 4592468 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4592553 4592695 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild exon 4592768 4593392 . - . gene_id "RvY_01603"; transcript_id "RvY_01603.1"; Scaffold001 rebuild transcript 4593525 4593830 . - . gene_id "RvY_01604"; transcript_id "RvY_01604.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4593525 4593830 . - . gene_id "RvY_01604"; transcript_id "RvY_01604.1"; Scaffold001 rebuild transcript 4594133 4594958 . + . gene_id "RvY_01605"; transcript_id "RvY_01605.1"; gene_name "RP-S16e"; annotation "40S ribosomal protein S16"; Pfam "[Ribosomal_S9] Ribosomal protein S9/S16"; CDD "40S ribosomal protein S16; Provisional"; KO "K02960"; similar_genes "RS16_MOUSE(e-value:1.4e-63;bit-score:240.0)"; Scaffold001 rebuild exon 4594133 4594192 . + . gene_id "RvY_01605"; transcript_id "RvY_01605.1"; Scaffold001 rebuild exon 4594318 4594419 . + . gene_id "RvY_01605"; transcript_id "RvY_01605.1"; Scaffold001 rebuild exon 4594487 4594583 . + . gene_id "RvY_01605"; transcript_id "RvY_01605.1"; Scaffold001 rebuild exon 4594708 4594755 . + . gene_id "RvY_01605"; transcript_id "RvY_01605.1"; Scaffold001 rebuild exon 4594813 4594958 . + . gene_id "RvY_01605"; transcript_id "RvY_01605.1"; Scaffold001 rebuild transcript 4595164 4595633 . - . gene_id "RvY_01606"; transcript_id "RvY_01606.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4595164 4595385 . - . gene_id "RvY_01606"; transcript_id "RvY_01606.1"; Scaffold001 rebuild exon 4595541 4595633 . - . gene_id "RvY_01606"; transcript_id "RvY_01606.1"; Scaffold001 rebuild transcript 4598498 4602732 . + . gene_id "RvY_01607"; transcript_id "RvY_01607.1"; gene_name "EMX"; annotation "homeobox protein EMX"; Pfam "[Homeobox]"; KO "K09317"; similar_genes "EMS_DROME(e-value:3.9e-25;bit-score:113.0)"; Scaffold001 rebuild exon 4598498 4598793 . + . gene_id "RvY_01607"; transcript_id "RvY_01607.1"; Scaffold001 rebuild exon 4598883 4599244 . + . gene_id "RvY_01607"; transcript_id "RvY_01607.1"; Scaffold001 rebuild exon 4600816 4601009 . + . gene_id "RvY_01607"; transcript_id "RvY_01607.1"; Scaffold001 rebuild exon 4601101 4601136 . + . gene_id "RvY_01607"; transcript_id "RvY_01607.1"; Scaffold001 rebuild exon 4602529 4602732 . + . gene_id "RvY_01607"; transcript_id "RvY_01607.1"; Scaffold001 rebuild transcript 4605086 4607242 . - . gene_id "RvY_01608"; transcript_id "RvY_01608.1"; gene_name "EH"; annotation "hypothetical protein."; Pfam "[efhand_3] Cytoskeletal-regulatory complex EF hand"; CDD "Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences."; Scaffold001 rebuild exon 4605086 4605408 . - . gene_id "RvY_01608"; transcript_id "RvY_01608.1"; Scaffold001 rebuild exon 4605604 4605925 . - . gene_id "RvY_01608"; transcript_id "RvY_01608.1"; Scaffold001 rebuild exon 4605988 4606416 . - . gene_id "RvY_01608"; transcript_id "RvY_01608.1"; Scaffold001 rebuild exon 4606592 4607242 . - . gene_id "RvY_01608"; transcript_id "RvY_01608.1"; Scaffold001 rebuild transcript 4608003 4612203 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; gene_name "DDX3X"; annotation "ATP-dependent RNA helicase DED1"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K11594"; similar_genes "DED1_MAGGR(e-value:2.7e-83;bit-score:306.0)"; Scaffold001 rebuild exon 4608003 4608440 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4608715 4609021 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4609084 4609246 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4609319 4609418 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4609485 4609623 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4609721 4609800 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4610260 4610655 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4610766 4610919 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4611014 4611198 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4611281 4611398 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4611462 4611642 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild exon 4611975 4612203 . + . gene_id "RvY_01609"; transcript_id "RvY_01609.1"; Scaffold001 rebuild transcript 4613639 4615416 . - . gene_id "RvY_01610"; transcript_id "RvY_01610.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4613639 4613848 . - . gene_id "RvY_01610"; transcript_id "RvY_01610.1"; Scaffold001 rebuild exon 4614070 4614591 . - . gene_id "RvY_01610"; transcript_id "RvY_01610.1"; Scaffold001 rebuild exon 4614709 4614893 . - . gene_id "RvY_01610"; transcript_id "RvY_01610.1"; Scaffold001 rebuild exon 4615074 4615416 . - . gene_id "RvY_01610"; transcript_id "RvY_01610.1"; Scaffold001 rebuild transcript 4616614 4616871 . + . gene_id "RvY_01611"; transcript_id "RvY_01611.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4616614 4616871 . + . gene_id "RvY_01611"; transcript_id "RvY_01611.1"; Scaffold001 rebuild transcript 4616983 4617432 . + . gene_id "RvY_01612"; transcript_id "RvY_01612.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4616983 4617072 . + . gene_id "RvY_01612"; transcript_id "RvY_01612.1"; Scaffold001 rebuild exon 4617166 4617432 . + . gene_id "RvY_01612"; transcript_id "RvY_01612.1"; Scaffold001 rebuild transcript 4618895 4623739 . + . gene_id "RvY_01613"; transcript_id "RvY_01613.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_2] MFS/sugar transport protein|[LacY_symp] LacY proton/sugar symporter|[MFS_1_like] MFS_1 like family"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold001 rebuild exon 4618895 4619806 . + . gene_id "RvY_01613"; transcript_id "RvY_01613.1"; Scaffold001 rebuild exon 4620004 4620561 . + . gene_id "RvY_01613"; transcript_id "RvY_01613.1"; Scaffold001 rebuild exon 4621187 4621397 . + . gene_id "RvY_01613"; transcript_id "RvY_01613.1"; Scaffold001 rebuild exon 4623044 4623211 . + . gene_id "RvY_01613"; transcript_id "RvY_01613.1"; Scaffold001 rebuild exon 4623417 4623739 . + . gene_id "RvY_01613"; transcript_id "RvY_01613.1"; Scaffold001 rebuild transcript 4624664 4627622 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; gene_name "GSK3B"; annotation "Glycogen synthase kinase-3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation."; EC "EC2.7.11.26"; KO "K03083"; similar_genes "GSK3_CAEBR(e-value:3.6e-136;bit-score:481.0)"; Scaffold001 rebuild exon 4624664 4624720 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4624940 4625040 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4625111 4625297 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4625365 4625665 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4626047 4626177 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4626326 4626517 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4627119 4627321 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild exon 4627457 4627622 . - . gene_id "RvY_01614"; transcript_id "RvY_01614.1"; Scaffold001 rebuild transcript 4628979 4630973 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; gene_name "NDUFS2"; annotation "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial"; Pfam "[Complex1_49kDa] Respiratory-chain NADH dehydrogenase, 49 Kd subunit"; CDD "NADH dehydrogenase subunit D; Validated"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03935"; similar_genes "NDUS2_RAT(e-value:3.1e-186;bit-score:648.0)"; Scaffold001 rebuild exon 4628979 4629254 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4629322 4629571 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4629711 4629949 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4630019 4630131 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4630206 4630407 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4630498 4630607 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4630684 4630802 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild exon 4630879 4630973 . - . gene_id "RvY_01615"; transcript_id "RvY_01615.1"; Scaffold001 rebuild transcript 4632310 4632513 . - . gene_id "RvY_01616"; transcript_id "RvY_01616.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4632310 4632513 . - . gene_id "RvY_01616"; transcript_id "RvY_01616.1"; Scaffold001 rebuild transcript 4632337 4635866 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; gene_name "RhoGAP_nadrin"; annotation "hypothetical protein."; Pfam "[RhoGAP]|[BAR]"; CDD "RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold001 rebuild exon 4632337 4632395 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4632518 4632659 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4632725 4632804 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4632901 4633009 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4633090 4633166 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4633230 4633344 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4633412 4633480 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4633578 4633659 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4633726 4633850 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4633910 4634139 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4634222 4634302 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4634384 4634500 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4634586 4634671 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4634751 4634880 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4634972 4635477 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild exon 4635682 4635866 . + . gene_id "RvY_01617"; transcript_id "RvY_01617.1"; Scaffold001 rebuild transcript 4636492 4640604 . + . gene_id "RvY_01618"; transcript_id "RvY_01618.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4636492 4637026 . + . gene_id "RvY_01618"; transcript_id "RvY_01618.1"; Scaffold001 rebuild exon 4637937 4638418 . + . gene_id "RvY_01618"; transcript_id "RvY_01618.1"; Scaffold001 rebuild exon 4638626 4639514 . + . gene_id "RvY_01618"; transcript_id "RvY_01618.1"; Scaffold001 rebuild exon 4639838 4640604 . + . gene_id "RvY_01618"; transcript_id "RvY_01618.1"; Scaffold001 rebuild transcript 4637097 4637333 . - . gene_id "RvY_01619"; transcript_id "RvY_01619.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4637097 4637333 . - . gene_id "RvY_01619"; transcript_id "RvY_01619.1"; Scaffold001 rebuild transcript 4640954 4643924 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; gene_name "LETM1"; annotation "putative LETM1 and EF-hand domain-containing protein 1, mitochondrial"; Pfam "[LETM1] LETM1-like protein"; CDD "LETM1-like protein. Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans."; similar_genes "LETM1_HUMAN(e-value:3.1e-29;bit-score:126.0)"; Scaffold001 rebuild exon 4640954 4641106 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4641298 4641448 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4641512 4641762 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4641829 4642080 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4642147 4642302 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4642362 4642613 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4642682 4643029 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4643238 4643751 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild exon 4643821 4643924 . - . gene_id "RvY_01620"; transcript_id "RvY_01620.1"; Scaffold001 rebuild transcript 4644537 4646053 . + . gene_id "RvY_01621"; transcript_id "RvY_01621.1"; gene_name "STUB1"; annotation "putative STIP1 homology and U box-containing protein 1"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[U-box]|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K09561"; similar_genes "STUB1_CHICK(e-value:1.9e-37;bit-score:153.0)"; Scaffold001 rebuild exon 4644537 4644539 . + . gene_id "RvY_01621"; transcript_id "RvY_01621.1"; Scaffold001 rebuild exon 4644652 4644837 . + . gene_id "RvY_01621"; transcript_id "RvY_01621.1"; Scaffold001 rebuild exon 4644917 4645115 . + . gene_id "RvY_01621"; transcript_id "RvY_01621.1"; Scaffold001 rebuild exon 4645279 4645716 . + . gene_id "RvY_01621"; transcript_id "RvY_01621.1"; Scaffold001 rebuild exon 4645929 4646053 . + . gene_id "RvY_01621"; transcript_id "RvY_01621.1"; Scaffold001 rebuild transcript 4646369 4649880 . - . gene_id "RvY_01622"; transcript_id "RvY_01622.1"; gene_name "SEC21"; annotation "Coatomer subunit gamma-2"; Pfam "[Gamma-COP] Coatomer gamma subunit appendage domain|[Adaptin_N] Adaptin N terminal region|[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat|[HEAT] HEAT repeat"; CDD "Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]"; similar_genes "COPG2_MOUSE(e-value:1.6e-102;bit-score:370.0)"; Scaffold001 rebuild exon 4646369 4646956 . - . gene_id "RvY_01622"; transcript_id "RvY_01622.1"; Scaffold001 rebuild exon 4647238 4647681 . - . gene_id "RvY_01622"; transcript_id "RvY_01622.1"; Scaffold001 rebuild exon 4647769 4648691 . - . gene_id "RvY_01622"; transcript_id "RvY_01622.1"; Scaffold001 rebuild exon 4648898 4649357 . - . gene_id "RvY_01622"; transcript_id "RvY_01622.1"; Scaffold001 rebuild exon 4649587 4649880 . - . gene_id "RvY_01622"; transcript_id "RvY_01622.1"; Scaffold001 rebuild transcript 4650390 4653101 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; gene_name "ABCE1"; annotation "ATP-binding cassette sub-family E member 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[RLI] Possible Fer4-like domain in RNase L inhibitor, RLI|[AAA_15] AAA ATPase domain|[AAA] ATPase family associated with various cellular activities (AAA)|[DUF258] Protein of unknown function, DUF258|[Fer4] 4Fe-4S binding domain|[AAA_17] AAA domain|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]"; KO "K06174"; similar_genes "ABCE1_HUMAN(e-value:9.7e-177;bit-score:616.0)"; Scaffold001 rebuild exon 4650390 4650513 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4650573 4650732 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4650827 4650968 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4651053 4651190 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4651289 4651455 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4651573 4651784 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4651876 4652157 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4652362 4652674 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4652757 4652879 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild exon 4652942 4653101 . + . gene_id "RvY_01623"; transcript_id "RvY_01623.1"; Scaffold001 rebuild transcript 4653457 4654980 . - . gene_id "RvY_01624"; transcript_id "RvY_01624.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4653457 4654980 . - . gene_id "RvY_01624"; transcript_id "RvY_01624.1"; Scaffold001 rebuild transcript 4656688 4658792 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; gene_name "(1)BLNK"; annotation "(1)B-cell linker(2)hypothetical protein."; Pfam "[SH2]"; CDD "(1)Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae."; KO "(1)K07371"; Scaffold001 rebuild exon 4656688 4656795 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4656878 4657032 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4657114 4657515 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4657605 4657987 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4658089 4658196 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4658412 4658467 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4658603 4658665 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild exon 4658727 4658792 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.1"; Scaffold001 rebuild transcript 4657576 4658792 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.2"; gene_name "(1)BLNK"; annotation "(1)B-cell linker(2)hypothetical protein."; Pfam "[SH2]"; CDD "(1)Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae."; KO "(1)K07371"; Scaffold001 rebuild exon 4657576 4657987 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.2"; Scaffold001 rebuild exon 4658089 4658196 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.2"; Scaffold001 rebuild exon 4658412 4658467 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.2"; Scaffold001 rebuild exon 4658603 4658665 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.2"; Scaffold001 rebuild exon 4658727 4658792 . - . gene_id "RvY_01625"; transcript_id "RvY_01625.2"; Scaffold001 rebuild transcript 4656792 4657184 . + . gene_id "RvY_01626"; transcript_id "RvY_01626.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4656792 4656811 . + . gene_id "RvY_01626"; transcript_id "RvY_01626.1"; Scaffold001 rebuild exon 4656900 4657017 . + . gene_id "RvY_01626"; transcript_id "RvY_01626.1"; Scaffold001 rebuild exon 4657086 4657184 . + . gene_id "RvY_01626"; transcript_id "RvY_01626.1"; Scaffold001 rebuild transcript 4657207 4657755 . + . gene_id "RvY_01627"; transcript_id "RvY_01627.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4657207 4657237 . + . gene_id "RvY_01627"; transcript_id "RvY_01627.1"; Scaffold001 rebuild exon 4657373 4657755 . + . gene_id "RvY_01627"; transcript_id "RvY_01627.1"; Scaffold001 rebuild transcript 4658261 4658522 . + . gene_id "RvY_01628"; transcript_id "RvY_01628.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4658261 4658336 . + . gene_id "RvY_01628"; transcript_id "RvY_01628.1"; Scaffold001 rebuild exon 4658398 4658522 . + . gene_id "RvY_01628"; transcript_id "RvY_01628.1"; Scaffold001 rebuild transcript 4660041 4664992 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; gene_name "K08282"; annotation "Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans_N] Ion transport protein N-terminal"; EC "EC2.7.11.1"; KO "K08282"; similar_genes "HCN2_MOUSE(e-value:5.3e-65;bit-score:245.0)"; Scaffold001 rebuild exon 4660041 4660596 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4660688 4660823 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4661257 4661518 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4661605 4661833 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4661902 4661940 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4662015 4662080 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4662152 4662333 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4662837 4662873 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4662937 4663003 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4663205 4663381 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4663671 4663707 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4663817 4663943 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4664679 4664760 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild exon 4664845 4664992 . - . gene_id "RvY_01629"; transcript_id "RvY_01629.1"; Scaffold001 rebuild transcript 4665604 4666015 . + . gene_id "RvY_01630"; transcript_id "RvY_01630.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4665604 4665663 . + . gene_id "RvY_01630"; transcript_id "RvY_01630.1"; Scaffold001 rebuild exon 4665734 4666015 . + . gene_id "RvY_01630"; transcript_id "RvY_01630.1"; Scaffold001 rebuild transcript 4666962 4669216 . - . gene_id "RvY_01631"; transcript_id "RvY_01631.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4666962 4667329 . - . gene_id "RvY_01631"; transcript_id "RvY_01631.1"; Scaffold001 rebuild exon 4668586 4668726 . - . gene_id "RvY_01631"; transcript_id "RvY_01631.1"; Scaffold001 rebuild exon 4669159 4669216 . - . gene_id "RvY_01631"; transcript_id "RvY_01631.1"; Scaffold001 rebuild transcript 4674109 4676707 . - . gene_id "RvY_01632"; transcript_id "RvY_01632.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4674109 4674272 . - . gene_id "RvY_01632"; transcript_id "RvY_01632.1"; Scaffold001 rebuild exon 4674363 4675185 . - . gene_id "RvY_01632"; transcript_id "RvY_01632.1"; Scaffold001 rebuild exon 4675756 4675907 . - . gene_id "RvY_01632"; transcript_id "RvY_01632.1"; Scaffold001 rebuild exon 4675973 4676575 . - . gene_id "RvY_01632"; transcript_id "RvY_01632.1"; Scaffold001 rebuild exon 4676653 4676707 . - . gene_id "RvY_01632"; transcript_id "RvY_01632.1"; Scaffold001 rebuild transcript 4677308 4679305 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; gene_name "WD40"; annotation "WD repeat and FYVE domain-containing protein 1"; Pfam "[WD40] WD domain, G-beta repeat|[FYVE] FYVE zinc finger"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDFY1_HUMAN(e-value:1.2e-51;bit-score:201.0)"; Scaffold001 rebuild exon 4677308 4677492 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4677551 4677692 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4677827 4677881 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4677975 4678125 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4678185 4678424 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4678540 4678645 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4678753 4678865 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4678953 4679181 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild exon 4679261 4679305 . + . gene_id "RvY_01633"; transcript_id "RvY_01633.1"; Scaffold001 rebuild transcript 4683407 4683721 . - . gene_id "RvY_01634"; transcript_id "RvY_01634.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4683407 4683567 . - . gene_id "RvY_01634"; transcript_id "RvY_01634.1"; Scaffold001 rebuild exon 4683664 4683721 . - . gene_id "RvY_01634"; transcript_id "RvY_01634.1"; Scaffold001 rebuild transcript 4686075 4686260 . + . gene_id "RvY_01635"; transcript_id "RvY_01635.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4686075 4686260 . + . gene_id "RvY_01635"; transcript_id "RvY_01635.1"; Scaffold001 rebuild transcript 4686512 4686835 . - . gene_id "RvY_01636"; transcript_id "RvY_01636.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4686512 4686568 . - . gene_id "RvY_01636"; transcript_id "RvY_01636.1"; Scaffold001 rebuild exon 4686659 4686835 . - . gene_id "RvY_01636"; transcript_id "RvY_01636.1"; Scaffold001 rebuild transcript 4688976 4693601 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; gene_name "ZFHX1"; annotation "putative Zinc finger protein 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[Homeobox]|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09299"; similar_genes "ZFH1_DROME(e-value:3.8e-40;bit-score:162.0)"; Scaffold001 rebuild exon 4688976 4689138 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4689231 4689362 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4689668 4690248 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4690328 4690407 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4690525 4691051 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4691333 4691970 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4692191 4693073 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild exon 4693339 4693601 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.1"; Scaffold001 rebuild transcript 4688976 4693601 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; gene_name "ZFHX1"; annotation "putative Zinc finger protein 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[Homeobox]|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09299"; similar_genes "ZFH1_DROME(e-value:3.8e-40;bit-score:162.0)"; Scaffold001 rebuild exon 4688976 4689138 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild exon 4689668 4690248 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild exon 4690328 4690407 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild exon 4690525 4691051 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild exon 4691333 4691970 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild exon 4692191 4693073 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild exon 4693339 4693601 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.2"; Scaffold001 rebuild transcript 4687457 4693601 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; gene_name "ZFHX1"; annotation "putative Zinc finger protein 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[Homeobox]|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09299"; similar_genes "ZFH1_DROME(e-value:3.8e-40;bit-score:162.0)"; Scaffold001 rebuild exon 4687457 4687472 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild exon 4689668 4690248 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild exon 4690328 4690407 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild exon 4690525 4691051 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild exon 4691333 4691970 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild exon 4692191 4693073 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild exon 4693339 4693601 . + . gene_id "RvY_01637"; transcript_id "RvY_01637.3"; Scaffold001 rebuild transcript 4694665 4694847 . + . gene_id "RvY_01638"; transcript_id "RvY_01638.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4694665 4694847 . + . gene_id "RvY_01638"; transcript_id "RvY_01638.1"; Scaffold001 rebuild transcript 4694879 4695250 . + . gene_id "RvY_01639"; transcript_id "RvY_01639.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4694879 4695250 . + . gene_id "RvY_01639"; transcript_id "RvY_01639.1"; Scaffold001 rebuild transcript 4695922 4699652 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; gene_name "CUL1"; annotation "putative Cullin-1"; Pfam "[Cullin] Cullin family|[Cullin_Nedd8] Cullin protein neddylation domain"; KO "K03347"; similar_genes "CUL1_HUMAN(e-value:9.9e-41;bit-score:164.0)"; Scaffold001 rebuild exon 4695922 4696002 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4696062 4696281 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4696345 4696571 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4696662 4696793 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4696869 4697066 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4697147 4697327 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4697407 4697513 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4697749 4697987 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4698053 4698215 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4698384 4698601 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4698671 4698761 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4698872 4699093 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4699203 4699419 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild exon 4699498 4699652 . - . gene_id "RvY_01640"; transcript_id "RvY_01640.1"; Scaffold001 rebuild transcript 4700778 4708723 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; gene_name "RhoGAP_CdGAP"; annotation "putative GTPase-activating protein CdGAPr"; Pfam "[RhoGAP]|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is Scaffold001 rebuild exon 4700778 4700963 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4701495 4701586 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4701646 4701736 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4702161 4702457 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4702686 4702778 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4702884 4702961 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4703199 4703246 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4703376 4703547 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4703767 4704244 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4704597 4704704 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4704831 4704967 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4705075 4705264 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4705499 4705887 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4706047 4706469 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild exon 4706709 4708723 . + . gene_id "RvY_01641"; transcript_id "RvY_01641.1"; Scaffold001 rebuild transcript 4709564 4715131 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; gene_name "PDZ"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; similar_genes "NEB2_RAT(e-value:8.1e-15;bit-score:78.0)"; Scaffold001 rebuild exon 4709564 4710170 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4710731 4711006 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4711076 4711641 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4711725 4712021 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4712351 4712761 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4712963 4713329 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4713404 4713594 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4713667 4713985 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4714043 4714495 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild exon 4714740 4715131 . + . gene_id "RvY_01642"; transcript_id "RvY_01642.1"; Scaffold001 rebuild transcript 4715727 4717506 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; gene_name "hemC"; annotation "hydroxymethylbilane synthase [EC:2.5.1.61]"; Pfam "[Porphobil_deamC] Porphobilinogen deaminase, C-terminal domain|[Porphobil_deam] Porphobilinogen deaminase, dipyromethane cofactor binding domain"; CDD "porphobilinogen deaminase; Reviewed"; EC "EC2.5.1.61"; KO "K01749"; similar_genes "HEM3_PROMA(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 4715727 4715777 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4715842 4715917 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4716021 4716070 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4716167 4716300 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4716382 4716535 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4716642 4716758 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4716819 4716977 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4717033 4717086 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild exon 4717159 4717506 . + . gene_id "RvY_01643"; transcript_id "RvY_01643.1"; Scaffold001 rebuild transcript 4718391 4718817 . + . gene_id "RvY_01644"; transcript_id "RvY_01644.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4718391 4718541 . + . gene_id "RvY_01644"; transcript_id "RvY_01644.1"; Scaffold001 rebuild exon 4718597 4718817 . + . gene_id "RvY_01644"; transcript_id "RvY_01644.1"; Scaffold001 rebuild transcript 4719823 4720357 . + . gene_id "RvY_01645"; transcript_id "RvY_01645.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4719823 4719903 . + . gene_id "RvY_01645"; transcript_id "RvY_01645.1"; Scaffold001 rebuild exon 4720211 4720357 . + . gene_id "RvY_01645"; transcript_id "RvY_01645.1"; Scaffold001 rebuild transcript 4721439 4722315 . + . gene_id "RvY_01646"; transcript_id "RvY_01646.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4721439 4721578 . + . gene_id "RvY_01646"; transcript_id "RvY_01646.1"; Scaffold001 rebuild exon 4721784 4721997 . + . gene_id "RvY_01646"; transcript_id "RvY_01646.1"; Scaffold001 rebuild exon 4722070 4722315 . + . gene_id "RvY_01646"; transcript_id "RvY_01646.1"; Scaffold001 rebuild transcript 4722567 4724815 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; gene_name "AMPD"; annotation "AMP deaminase 2"; Pfam "[A_deaminase] Adenosine/AMP deaminase"; CDD "AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the HMM."; EC "EC3.5.4.6"; KO "K01490"; similar_genes "AMPD2_HUMAN(e-value:7.2e-86;bit-score:314.0)"; Scaffold001 rebuild exon 4722567 4722682 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild exon 4722737 4723056 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild exon 4723277 4723419 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild exon 4723503 4723666 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild exon 4723751 4723877 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild exon 4723954 4724412 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild exon 4724531 4724815 . + . gene_id "RvY_01647"; transcript_id "RvY_01647.1"; Scaffold001 rebuild transcript 4724812 4725170 . - . gene_id "RvY_01648"; transcript_id "RvY_01648.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4724812 4724920 . - . gene_id "RvY_01648"; transcript_id "RvY_01648.1"; Scaffold001 rebuild exon 4725085 4725170 . - . gene_id "RvY_01648"; transcript_id "RvY_01648.1"; Scaffold001 rebuild transcript 4724992 4725351 . + . gene_id "RvY_01649"; transcript_id "RvY_01649.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4724992 4725351 . + . gene_id "RvY_01649"; transcript_id "RvY_01649.1"; Scaffold001 rebuild transcript 4726002 4726860 . + . gene_id "RvY_01650"; transcript_id "RvY_01650.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4726002 4726305 . + . gene_id "RvY_01650"; transcript_id "RvY_01650.1"; Scaffold001 rebuild exon 4726385 4726860 . + . gene_id "RvY_01650"; transcript_id "RvY_01650.1"; Scaffold001 rebuild transcript 4726906 4736454 . + . gene_id "RvY_01651"; transcript_id "RvY_01651.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4726906 4727284 . + . gene_id "RvY_01651"; transcript_id "RvY_01651.1"; Scaffold001 rebuild exon 4732207 4733037 . + . gene_id "RvY_01651"; transcript_id "RvY_01651.1"; Scaffold001 rebuild exon 4735259 4735648 . + . gene_id "RvY_01651"; transcript_id "RvY_01651.1"; Scaffold001 rebuild exon 4735724 4736454 . + . gene_id "RvY_01651"; transcript_id "RvY_01651.1"; Scaffold001 rebuild transcript 4736510 4736680 . + . gene_id "RvY_01652"; transcript_id "RvY_01652.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4736510 4736680 . + . gene_id "RvY_01652"; transcript_id "RvY_01652.1"; Scaffold001 rebuild transcript 4737839 4738474 . + . gene_id "RvY_01653"; transcript_id "RvY_01653.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4737839 4738061 . + . gene_id "RvY_01653"; transcript_id "RvY_01653.1"; Scaffold001 rebuild exon 4738117 4738291 . + . gene_id "RvY_01653"; transcript_id "RvY_01653.1"; Scaffold001 rebuild exon 4738378 4738474 . + . gene_id "RvY_01653"; transcript_id "RvY_01653.1"; Scaffold001 rebuild transcript 4738978 4740860 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; gene_name "mtnB"; annotation "APAF1-interacting protein"; Pfam "[Aldolase_II] Class II Aldolase and Adducin N-terminal domain"; CDD "methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine."; EC "EC4.2.1.109"; KO "K08964"; similar_genes "APIP_HUMAN(e-value:3.4e-75;bit-score:279.0)"; Scaffold001 rebuild exon 4738978 4739080 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4739351 4739414 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4739642 4739684 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4739761 4739957 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4740034 4740151 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4740220 4740268 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4740353 4740384 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild exon 4740768 4740860 . - . gene_id "RvY_01654"; transcript_id "RvY_01654.1"; Scaffold001 rebuild transcript 4743605 4744521 . + . gene_id "RvY_01655"; transcript_id "RvY_01655.1"; gene_name "ELAV_HUD_SF"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076)."; Scaffold001 rebuild exon 4743605 4743653 . + . gene_id "RvY_01655"; transcript_id "RvY_01655.1"; Scaffold001 rebuild exon 4743887 4743990 . + . gene_id "RvY_01655"; transcript_id "RvY_01655.1"; Scaffold001 rebuild exon 4744118 4744262 . + . gene_id "RvY_01655"; transcript_id "RvY_01655.1"; Scaffold001 rebuild exon 4744331 4744521 . + . gene_id "RvY_01655"; transcript_id "RvY_01655.1"; Scaffold001 rebuild transcript 4744910 4745616 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4744910 4745012 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.1"; Scaffold001 rebuild exon 4745108 4745315 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.1"; Scaffold001 rebuild exon 4745382 4745616 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.1"; Scaffold001 rebuild transcript 4745104 4745616 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4745104 4745315 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.2"; Scaffold001 rebuild exon 4745382 4745616 . - . gene_id "RvY_01656"; transcript_id "RvY_01656.2"; Scaffold001 rebuild transcript 4746157 4748647 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; gene_name "clpX"; annotation "putative ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial"; Pfam "[AAA_5] AAA domain (dynein-related subfamily)|[Sigma54_activat] Sigma-54 interaction domain|[AAA] ATPase family associated with various cellular activities (AAA)|[ClpB_D2-small] C-terminal, D2-small domain, of ClpB protein|[AAA_2] AAA domain (Cdc48 subfamily)|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "ATP-dependent protease ATP-binding subunit ClpX; Provisional"; KO "K03544"; similar_genes "CLPX_HUMAN(e-value:6.9e-46;bit-score:182.0)"; Scaffold001 rebuild exon 4746157 4746444 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4746620 4746691 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4746753 4747031 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4747101 4747259 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4747326 4747771 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4747877 4748063 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4748129 4748268 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild exon 4748425 4748647 . - . gene_id "RvY_01657"; transcript_id "RvY_01657.1"; Scaffold001 rebuild transcript 4749982 4751337 . + . gene_id "RvY_01658"; transcript_id "RvY_01658.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4749982 4750957 . + . gene_id "RvY_01658"; transcript_id "RvY_01658.1"; Scaffold001 rebuild exon 4751024 4751337 . + . gene_id "RvY_01658"; transcript_id "RvY_01658.1"; Scaffold001 rebuild transcript 4751670 4753070 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; gene_name "Nudix_Hydrolase_12"; annotation "hypothetical protein."; Pfam "[NUDIX]"; CDD "Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U"; similar_genes "NUDT6_XENLA(e-value:1.8e-14;bit-score:77.0)"; Scaffold001 rebuild exon 4751670 4751983 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; Scaffold001 rebuild exon 4752126 4752225 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; Scaffold001 rebuild exon 4752282 4752337 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; Scaffold001 rebuild exon 4752431 4752640 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; Scaffold001 rebuild exon 4752741 4752912 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; Scaffold001 rebuild exon 4753020 4753070 . - . gene_id "RvY_01659"; transcript_id "RvY_01659.1"; Scaffold001 rebuild transcript 4752473 4753389 . + . gene_id "RvY_01660"; transcript_id "RvY_01660.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4752473 4752586 . + . gene_id "RvY_01660"; transcript_id "RvY_01660.1"; Scaffold001 rebuild exon 4753129 4753389 . + . gene_id "RvY_01660"; transcript_id "RvY_01660.1"; Scaffold001 rebuild transcript 4756443 4760570 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; gene_name "EPS8"; annotation "hypothetical protein."; Pfam "[PTB] Phosphotyrosine-binding domain|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; similar_genes "EPS8_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold001 rebuild exon 4756443 4756719 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4757928 4758020 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4758226 4758610 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4758691 4758839 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4758922 4759197 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4759369 4759457 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4759516 4759941 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4760001 4760116 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4760206 4760377 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild exon 4760463 4760570 . + . gene_id "RvY_01661"; transcript_id "RvY_01661.1"; Scaffold001 rebuild transcript 4761193 4764166 . + . gene_id "RvY_01662"; transcript_id "RvY_01662.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4761193 4762374 . + . gene_id "RvY_01662"; transcript_id "RvY_01662.1"; Scaffold001 rebuild exon 4762630 4763355 . + . gene_id "RvY_01662"; transcript_id "RvY_01662.1"; Scaffold001 rebuild exon 4763630 4764166 . + . gene_id "RvY_01662"; transcript_id "RvY_01662.1"; Scaffold001 rebuild transcript 4764378 4765478 . - . gene_id "RvY_01663"; transcript_id "RvY_01663.1"; gene_name "CDP-ME_synthetase"; annotation "hypothetical protein."; Pfam "[IspD] Uncharacterized protein family UPF0007"; CDD "CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs."; Scaffold001 rebuild exon 4764378 4764443 . - . gene_id "RvY_01663"; transcript_id "RvY_01663.1"; Scaffold001 rebuild exon 4764541 4764798 . - . gene_id "RvY_01663"; transcript_id "RvY_01663.1"; Scaffold001 rebuild exon 4764874 4765156 . - . gene_id "RvY_01663"; transcript_id "RvY_01663.1"; Scaffold001 rebuild exon 4765225 4765478 . - . gene_id "RvY_01663"; transcript_id "RvY_01663.1"; Scaffold001 rebuild transcript 4766491 4769370 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; gene_name "COG5273"; annotation "hypothetical protein."; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDHC5_CANFA(e-value:5.1e-25;bit-score:112.0)"; Scaffold001 rebuild exon 4766491 4767147 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4767548 4767701 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4767784 4767875 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4768182 4768284 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4768441 4768597 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4768667 4768837 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4768917 4769038 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild exon 4769249 4769370 . - . gene_id "RvY_01664"; transcript_id "RvY_01664.1"; Scaffold001 rebuild transcript 4771309 4773400 . - . gene_id "RvY_01665"; transcript_id "RvY_01665.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4771309 4772112 . - . gene_id "RvY_01665"; transcript_id "RvY_01665.1"; Scaffold001 rebuild exon 4772181 4772402 . - . gene_id "RvY_01665"; transcript_id "RvY_01665.1"; Scaffold001 rebuild exon 4772591 4773018 . - . gene_id "RvY_01665"; transcript_id "RvY_01665.1"; Scaffold001 rebuild exon 4773094 4773400 . - . gene_id "RvY_01665"; transcript_id "RvY_01665.1"; Scaffold001 rebuild transcript 4774474 4777486 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; gene_name "MAP2K7"; annotation "Dual specificity mitogen-activated protein kinase kinase 7"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade."; EC "EC2.7.12.2"; KO "K04431"; similar_genes "MP2K7_HUMAN(e-value:1.9e-73;bit-score:273.0)"; Scaffold001 rebuild exon 4774474 4774726 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4774947 4775151 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4775244 4775424 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4775511 4775630 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4775725 4775832 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4775920 4776007 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4776093 4776184 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4776355 4776581 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4776656 4776852 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild exon 4777047 4777486 . + . gene_id "RvY_01666"; transcript_id "RvY_01666.1"; Scaffold001 rebuild transcript 4778098 4780600 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4778098 4778402 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4778459 4778632 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4778723 4778816 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4778894 4778995 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4779081 4779216 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4779302 4779348 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4779409 4779494 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4779583 4779663 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4779745 4779849 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4779926 4779998 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4780102 4780259 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4780362 4780493 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild exon 4780561 4780600 . - . gene_id "RvY_01667"; transcript_id "RvY_01667.1"; Scaffold001 rebuild transcript 4781544 4786553 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; gene_name "PPM1D"; annotation "protein phosphatase 1D (formerly 2C) [EC:3.1.3.16]"; Pfam "[PP2C_2] Protein phosphatase 2C|[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.16"; KO "K10147"; similar_genes "PPM1D_HUMAN(e-value:3.4e-09;bit-score:60.0)"; Scaffold001 rebuild exon 4781544 4781742 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; Scaffold001 rebuild exon 4781960 4782388 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; Scaffold001 rebuild exon 4782678 4783069 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; Scaffold001 rebuild exon 4784808 4785291 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; Scaffold001 rebuild exon 4785591 4785991 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; Scaffold001 rebuild exon 4786296 4786553 . + . gene_id "RvY_01668"; transcript_id "RvY_01668.1"; Scaffold001 rebuild transcript 4789428 4790112 . + . gene_id "RvY_01669"; transcript_id "RvY_01669.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4789428 4789550 . + . gene_id "RvY_01669"; transcript_id "RvY_01669.1"; Scaffold001 rebuild exon 4789682 4789927 . + . gene_id "RvY_01669"; transcript_id "RvY_01669.1"; Scaffold001 rebuild exon 4790086 4790112 . + . gene_id "RvY_01669"; transcript_id "RvY_01669.1"; Scaffold001 rebuild transcript 4790209 4790418 . - . gene_id "RvY_01670"; transcript_id "RvY_01670.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4790209 4790418 . - . gene_id "RvY_01670"; transcript_id "RvY_01670.1"; Scaffold001 rebuild transcript 4791221 4797175 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; gene_name "RhoGAP_KIAA1688"; annotation "putative Uncharacterized protein KIAA1688"; Pfam "[WW]|[RhoGAP]|[MyTH4]"; CDD "RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold001 rebuild exon 4791221 4791321 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4791536 4791674 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4791972 4792163 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4792310 4792489 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4792940 4793112 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4793179 4793599 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4793881 4794523 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4794685 4794909 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4794973 4795205 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4795275 4795589 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4795682 4795908 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4795982 4796111 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4796201 4796397 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4796468 4796542 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4796654 4796912 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild exon 4796981 4797175 . + . gene_id "RvY_01671"; transcript_id "RvY_01671.1"; Scaffold001 rebuild transcript 4802019 4802564 . - . gene_id "RvY_01672"; transcript_id "RvY_01672.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4802019 4802564 . - . gene_id "RvY_01672"; transcript_id "RvY_01672.1"; Scaffold001 rebuild transcript 4802751 4804161 . - . gene_id "RvY_01673"; transcript_id "RvY_01673.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold001 rebuild exon 4802751 4802992 . - . gene_id "RvY_01673"; transcript_id "RvY_01673.1"; Scaffold001 rebuild exon 4803050 4803209 . - . gene_id "RvY_01673"; transcript_id "RvY_01673.1"; Scaffold001 rebuild exon 4803283 4803429 . - . gene_id "RvY_01673"; transcript_id "RvY_01673.1"; Scaffold001 rebuild exon 4803561 4803843 . - . gene_id "RvY_01673"; transcript_id "RvY_01673.1"; Scaffold001 rebuild exon 4804001 4804161 . - . gene_id "RvY_01673"; transcript_id "RvY_01673.1"; Scaffold001 rebuild transcript 4805964 4807291 . - . gene_id "RvY_01674"; transcript_id "RvY_01674.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4805964 4806923 . - . gene_id "RvY_01674"; transcript_id "RvY_01674.1"; Scaffold001 rebuild exon 4807259 4807291 . - . gene_id "RvY_01674"; transcript_id "RvY_01674.1"; Scaffold001 rebuild transcript 4807722 4807994 . - . gene_id "RvY_01675"; transcript_id "RvY_01675.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4807722 4807994 . - . gene_id "RvY_01675"; transcript_id "RvY_01675.1"; Scaffold001 rebuild transcript 4811708 4813040 . - . gene_id "RvY_01676"; transcript_id "RvY_01676.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4811708 4811878 . - . gene_id "RvY_01676"; transcript_id "RvY_01676.1"; Scaffold001 rebuild exon 4811938 4812065 . - . gene_id "RvY_01676"; transcript_id "RvY_01676.1"; Scaffold001 rebuild exon 4812130 4812324 . - . gene_id "RvY_01676"; transcript_id "RvY_01676.1"; Scaffold001 rebuild exon 4812854 4813040 . - . gene_id "RvY_01676"; transcript_id "RvY_01676.1"; Scaffold001 rebuild transcript 4813361 4815380 . - . gene_id "RvY_01677"; transcript_id "RvY_01677.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase|[OTU] OTU-like cysteine protease"; Scaffold001 rebuild exon 4813361 4813627 . - . gene_id "RvY_01677"; transcript_id "RvY_01677.1"; Scaffold001 rebuild exon 4814077 4814559 . - . gene_id "RvY_01677"; transcript_id "RvY_01677.1"; Scaffold001 rebuild exon 4815171 4815380 . - . gene_id "RvY_01677"; transcript_id "RvY_01677.1"; Scaffold001 rebuild transcript 4815670 4817708 . - . gene_id "RvY_01678"; transcript_id "RvY_01678.1"; annotation "hypothetical protein."; Pfam "[Helitron_like_N] Helitron helicase-like domain at N-terminus"; Scaffold001 rebuild exon 4815670 4815698 . - . gene_id "RvY_01678"; transcript_id "RvY_01678.1"; Scaffold001 rebuild exon 4816547 4817308 . - . gene_id "RvY_01678"; transcript_id "RvY_01678.1"; Scaffold001 rebuild exon 4817603 4817708 . - . gene_id "RvY_01678"; transcript_id "RvY_01678.1"; Scaffold001 rebuild transcript 4818898 4835737 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.1"; gene_name "COG3889"; annotation "(1)putative Salivary glue protein Sgs-3(2)hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "(1)SGS3_DROME(e-value:2.1e-32;bit-score:137.0)(2)MUC1_XENLA(e-value:1.5e-22;bit-score:104.0)"; Scaffold001 rebuild exon 4818898 4819124 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.1"; Scaffold001 rebuild exon 4830883 4831068 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.1"; Scaffold001 rebuild exon 4835176 4835737 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.1"; Scaffold001 rebuild transcript 4818898 4835557 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.2"; gene_name "COG3889"; annotation "(1)putative Salivary glue protein Sgs-3(2)hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "(1)SGS3_DROME(e-value:2.1e-32;bit-score:137.0)(2)MUC1_XENLA(e-value:1.5e-22;bit-score:104.0)"; Scaffold001 rebuild exon 4818898 4819124 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.2"; Scaffold001 rebuild exon 4830883 4831068 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.2"; Scaffold001 rebuild exon 4835176 4835557 . - . gene_id "RvY_01679"; transcript_id "RvY_01679.2"; Scaffold001 rebuild transcript 4828020 4828334 . + . gene_id "RvY_01680"; transcript_id "RvY_01680.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4828020 4828334 . + . gene_id "RvY_01680"; transcript_id "RvY_01680.1"; Scaffold001 rebuild transcript 4828545 4829266 . + . gene_id "RvY_01681"; transcript_id "RvY_01681.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4828545 4828722 . + . gene_id "RvY_01681"; transcript_id "RvY_01681.1"; Scaffold001 rebuild exon 4828835 4829043 . + . gene_id "RvY_01681"; transcript_id "RvY_01681.1"; Scaffold001 rebuild exon 4829120 4829266 . + . gene_id "RvY_01681"; transcript_id "RvY_01681.1"; Scaffold001 rebuild transcript 4829446 4830210 . + . gene_id "RvY_01682"; transcript_id "RvY_01682.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4829446 4829550 . + . gene_id "RvY_01682"; transcript_id "RvY_01682.1"; Scaffold001 rebuild exon 4829668 4830210 . + . gene_id "RvY_01682"; transcript_id "RvY_01682.1"; Scaffold001 rebuild transcript 4835749 4847969 . - . gene_id "RvY_01683"; transcript_id "RvY_01683.1"; gene_name "COG3889"; annotation "putative Salivary glue protein Sgs-3"; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "SGS3_DROME(e-value:7.0e-31;bit-score:132.0)"; Scaffold001 rebuild exon 4835749 4836323 . - . gene_id "RvY_01683"; transcript_id "RvY_01683.1"; Scaffold001 rebuild exon 4846933 4846971 . - . gene_id "RvY_01683"; transcript_id "RvY_01683.1"; Scaffold001 rebuild exon 4847774 4847969 . - . gene_id "RvY_01683"; transcript_id "RvY_01683.1"; Scaffold001 rebuild transcript 4842774 4843067 . + . gene_id "RvY_01684"; transcript_id "RvY_01684.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4842774 4843067 . + . gene_id "RvY_01684"; transcript_id "RvY_01684.1"; Scaffold001 rebuild transcript 4855193 4855807 . - . gene_id "RvY_01685"; transcript_id "RvY_01685.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4855193 4855807 . - . gene_id "RvY_01685"; transcript_id "RvY_01685.1"; Scaffold001 rebuild transcript 4865520 4865831 . - . gene_id "RvY_01686"; transcript_id "RvY_01686.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4865520 4865831 . - . gene_id "RvY_01686"; transcript_id "RvY_01686.4"; Scaffold001 rebuild transcript 4866194 4866961 . - . gene_id "RvY_01687"; transcript_id "RvY_01687.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4866194 4866961 . - . gene_id "RvY_01687"; transcript_id "RvY_01687.1"; Scaffold001 rebuild transcript 4867210 4870245 . - . gene_id "RvY_01688"; transcript_id "RvY_01688.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 4867210 4867389 . - . gene_id "RvY_01688"; transcript_id "RvY_01688.1"; Scaffold001 rebuild exon 4868580 4868675 . - . gene_id "RvY_01688"; transcript_id "RvY_01688.1"; Scaffold001 rebuild exon 4869328 4869762 . - . gene_id "RvY_01688"; transcript_id "RvY_01688.1"; Scaffold001 rebuild exon 4869844 4870245 . - . gene_id "RvY_01688"; transcript_id "RvY_01688.1"; Scaffold001 rebuild transcript 4872698 4873446 . + . gene_id "RvY_01689"; transcript_id "RvY_01689.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4872698 4872872 . + . gene_id "RvY_01689"; transcript_id "RvY_01689.1"; Scaffold001 rebuild exon 4873325 4873446 . + . gene_id "RvY_01689"; transcript_id "RvY_01689.1"; Scaffold001 rebuild transcript 4877017 4885069 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; gene_name "PKD1L2"; annotation "polycystin 1L2"; Pfam "[PKD_channel] Polycystin cation channel|[PLAT] PLAT/LH2 domain|[Ion_trans] Ion transport protein|[GPS] Latrophilin/CL-1-like GPS domain"; CDD "Polycystin cation channel. This family contains the cation channel region of PKD1 and PKD2 proteins."; KO "K04988"; Scaffold001 rebuild exon 4877017 4877348 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4877569 4878156 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4878575 4879597 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4879784 4880260 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4880693 4881102 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4881369 4881857 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4881958 4882241 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4882301 4882531 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4882836 4883368 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4883917 4884073 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4884179 4884536 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4884595 4884689 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4884765 4884890 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild exon 4885064 4885069 . - . gene_id "RvY_01690"; transcript_id "RvY_01690.1"; Scaffold001 rebuild transcript 4886637 4890827 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; annotation "hypothetical protein."; Pfam "(1,3)[REJ]|(1,2)[EGF_3] EGF domain|(1,2)[hEGF] Human growth factor-like EGF|(1,2)[cEGF] Complement Clr-like EGF-like|(1,2)[EGF] EGF-like domain|(1,2)[EGF_CA] Calcium-binding EGF domain"; similar_genes "(1,2)DLLA_DANRE(e-value:8.9e-10;bit-score:62.0)"; Scaffold001 rebuild exon 4886637 4886711 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; Scaffold001 rebuild exon 4886794 4886955 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; Scaffold001 rebuild exon 4887120 4888093 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; Scaffold001 rebuild exon 4888865 4889251 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; Scaffold001 rebuild exon 4889488 4890035 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; Scaffold001 rebuild exon 4890283 4890827 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.1"; Scaffold001 rebuild transcript 4888857 4892126 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; annotation "hypothetical protein."; Pfam "(1,3)[REJ]|(1,2)[EGF_3] EGF domain|(1,2)[hEGF] Human growth factor-like EGF|(1,2)[cEGF] Complement Clr-like EGF-like|(1,2)[EGF] EGF-like domain|(1,2)[EGF_CA] Calcium-binding EGF domain"; similar_genes "(1,2)DLLA_DANRE(e-value:8.9e-10;bit-score:62.0)"; Scaffold001 rebuild exon 4888857 4889251 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; Scaffold001 rebuild exon 4889488 4890035 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; Scaffold001 rebuild exon 4890283 4890928 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; Scaffold001 rebuild exon 4890994 4891290 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; Scaffold001 rebuild exon 4891584 4891970 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; Scaffold001 rebuild exon 4892048 4892126 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.2"; Scaffold001 rebuild transcript 4885655 4887968 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; annotation "hypothetical protein."; Pfam "(1,3)[REJ]|(1,2)[EGF_3] EGF domain|(1,2)[hEGF] Human growth factor-like EGF|(1,2)[cEGF] Complement Clr-like EGF-like|(1,2)[EGF] EGF-like domain|(1,2)[EGF_CA] Calcium-binding EGF domain"; similar_genes "(1,2)DLLA_DANRE(e-value:8.9e-10;bit-score:62.0)"; Scaffold001 rebuild exon 4885655 4885899 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; Scaffold001 rebuild exon 4885967 4886229 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; Scaffold001 rebuild exon 4886285 4886465 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; Scaffold001 rebuild exon 4886578 4886711 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; Scaffold001 rebuild exon 4886798 4886955 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; Scaffold001 rebuild exon 4887120 4887968 . - . gene_id "RvY_01691"; transcript_id "RvY_01691.3"; Scaffold001 rebuild transcript 4896951 4898007 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4896951 4896982 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.1"; Scaffold001 rebuild exon 4897141 4897541 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.1"; Scaffold001 rebuild exon 4897607 4898007 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.1"; Scaffold001 rebuild transcript 4897145 4898007 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4897145 4897541 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.2"; Scaffold001 rebuild exon 4897607 4898007 . + . gene_id "RvY_01692"; transcript_id "RvY_01692.2"; Scaffold001 rebuild transcript 4898294 4898623 . - . gene_id "RvY_01693"; transcript_id "RvY_01693.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4898294 4898623 . - . gene_id "RvY_01693"; transcript_id "RvY_01693.1"; Scaffold001 rebuild transcript 4898890 4899129 . - . gene_id "RvY_01694"; transcript_id "RvY_01694.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4898890 4899129 . - . gene_id "RvY_01694"; transcript_id "RvY_01694.1"; Scaffold001 rebuild transcript 4903539 4905594 . - . gene_id "RvY_01695"; transcript_id "RvY_01695.1"; annotation "hypothetical protein."; Pfam "[Sec10] Exocyst complex component Sec10"; Scaffold001 rebuild exon 4903539 4904159 . - . gene_id "RvY_01695"; transcript_id "RvY_01695.1"; Scaffold001 rebuild exon 4904226 4904956 . - . gene_id "RvY_01695"; transcript_id "RvY_01695.1"; Scaffold001 rebuild exon 4905045 4905594 . - . gene_id "RvY_01695"; transcript_id "RvY_01695.1"; Scaffold001 rebuild transcript 4905670 4906209 . - . gene_id "RvY_01696"; transcript_id "RvY_01696.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4905670 4906209 . - . gene_id "RvY_01696"; transcript_id "RvY_01696.1"; Scaffold001 rebuild transcript 4907497 4910982 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.-"; similar_genes "NEPL2_CAEEL(e-value:4.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 4907497 4907644 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4907722 4907781 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4907864 4907891 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4907980 4908209 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4908307 4908731 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4908840 4909111 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4909187 4909409 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4909485 4909535 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4909714 4910005 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4910073 4910192 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4910262 4910452 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4910544 4910622 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4910683 4910760 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild exon 4910858 4910982 . + . gene_id "RvY_01697"; transcript_id "RvY_01697.1"; Scaffold001 rebuild transcript 4914807 4916500 . + . gene_id "RvY_01698"; transcript_id "RvY_01698.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 4914807 4915140 . + . gene_id "RvY_01698"; transcript_id "RvY_01698.1"; Scaffold001 rebuild exon 4916361 4916500 . + . gene_id "RvY_01698"; transcript_id "RvY_01698.1"; Scaffold001 rebuild transcript 4916534 4921335 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 4916534 4916691 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4917765 4918101 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4918459 4918596 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4918679 4918907 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4919006 4919159 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4919229 4919336 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4919402 4919577 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4919663 4920475 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4920534 4920958 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild exon 4921174 4921335 . + . gene_id "RvY_01699"; transcript_id "RvY_01699.1"; Scaffold001 rebuild transcript 4921854 4923247 . + . gene_id "RvY_01700"; transcript_id "RvY_01700.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold001 rebuild exon 4921854 4922121 . + . gene_id "RvY_01700"; transcript_id "RvY_01700.1"; Scaffold001 rebuild exon 4922205 4922338 . + . gene_id "RvY_01700"; transcript_id "RvY_01700.1"; Scaffold001 rebuild exon 4922408 4923247 . + . gene_id "RvY_01700"; transcript_id "RvY_01700.1"; Scaffold001 rebuild transcript 4923968 4924694 . + . gene_id "RvY_01701"; transcript_id "RvY_01701.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4923968 4924460 . + . gene_id "RvY_01701"; transcript_id "RvY_01701.1"; Scaffold001 rebuild exon 4924546 4924694 . + . gene_id "RvY_01701"; transcript_id "RvY_01701.1"; Scaffold001 rebuild transcript 4925037 4926159 . + . gene_id "RvY_01702"; transcript_id "RvY_01702.1"; annotation "hypothetical protein."; Pfam "[BACK] BTB And C-terminal Kelch"; Scaffold001 rebuild exon 4925037 4925480 . + . gene_id "RvY_01702"; transcript_id "RvY_01702.1"; Scaffold001 rebuild exon 4925543 4925736 . + . gene_id "RvY_01702"; transcript_id "RvY_01702.1"; Scaffold001 rebuild exon 4925808 4925965 . + . gene_id "RvY_01702"; transcript_id "RvY_01702.1"; Scaffold001 rebuild exon 4926074 4926159 . + . gene_id "RvY_01702"; transcript_id "RvY_01702.1"; Scaffold001 rebuild transcript 4926384 4926701 . + . gene_id "RvY_01703"; transcript_id "RvY_01703.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4926384 4926701 . + . gene_id "RvY_01703"; transcript_id "RvY_01703.1"; Scaffold001 rebuild transcript 4927123 4928783 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; gene_name "ADIPOR"; annotation "putative ADIPOR-like receptor CG5315"; Pfam "[HlyIII] Haemolysin-III related"; KO "K07297"; similar_genes "ADRL_DROME(e-value:2.9e-40;bit-score:163.0)"; Scaffold001 rebuild exon 4927123 4927269 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; Scaffold001 rebuild exon 4927335 4927528 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; Scaffold001 rebuild exon 4927596 4927783 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; Scaffold001 rebuild exon 4927847 4928021 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; Scaffold001 rebuild exon 4928164 4928416 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; Scaffold001 rebuild exon 4928478 4928783 . - . gene_id "RvY_01704"; transcript_id "RvY_01704.1"; Scaffold001 rebuild transcript 4929556 4929870 . + . gene_id "RvY_01705"; transcript_id "RvY_01705.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 4929556 4929870 . + . gene_id "RvY_01705"; transcript_id "RvY_01705.1"; Scaffold001 rebuild transcript 4930077 4931355 . + . gene_id "RvY_01706"; transcript_id "RvY_01706.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 4930077 4930280 . + . gene_id "RvY_01706"; transcript_id "RvY_01706.1"; Scaffold001 rebuild exon 4930368 4930580 . + . gene_id "RvY_01706"; transcript_id "RvY_01706.1"; Scaffold001 rebuild exon 4930657 4931355 . + . gene_id "RvY_01706"; transcript_id "RvY_01706.1"; Scaffold001 rebuild transcript 4932856 4934872 . + . gene_id "RvY_01707"; transcript_id "RvY_01707.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4932856 4933951 . + . gene_id "RvY_01707"; transcript_id "RvY_01707.1"; Scaffold001 rebuild exon 4934835 4934872 . + . gene_id "RvY_01707"; transcript_id "RvY_01707.1"; Scaffold001 rebuild transcript 4937437 4939386 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4937437 4937857 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.1"; Scaffold001 rebuild exon 4938420 4939109 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.1"; Scaffold001 rebuild exon 4939229 4939386 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.1"; Scaffold001 rebuild transcript 4937437 4939147 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4937437 4937857 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.2"; Scaffold001 rebuild exon 4938420 4939147 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.2"; Scaffold001 rebuild transcript 4936009 4937444 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4936009 4936372 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.3"; Scaffold001 rebuild exon 4936655 4937044 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.3"; Scaffold001 rebuild exon 4937311 4937444 . + . gene_id "RvY_01708"; transcript_id "RvY_01708.3"; Scaffold001 rebuild transcript 4940052 4940829 . + . gene_id "RvY_01709"; transcript_id "RvY_01709.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4940052 4940481 . + . gene_id "RvY_01709"; transcript_id "RvY_01709.1"; Scaffold001 rebuild exon 4940684 4940829 . + . gene_id "RvY_01709"; transcript_id "RvY_01709.1"; Scaffold001 rebuild transcript 4939582 4940103 . + . gene_id "RvY_01709"; transcript_id "RvY_01709.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4939582 4940103 . + . gene_id "RvY_01709"; transcript_id "RvY_01709.2"; Scaffold001 rebuild transcript 4941348 4942551 . - . gene_id "RvY_01710"; transcript_id "RvY_01710.1"; gene_name "tRNA_m1G_MT"; annotation "hypothetical protein."; Pfam "[tRNA_m1G_MT] tRNA (Guanine-1)-methyltransferase"; CDD "tRNA (Guanine-1)-methyltransferase. This is a family of tRNA (Guanine-1)-methyltransferases EC:2.1.1.31. In E.coli K12 this enzyme catalyses the conversion of a guanosine residue to N1-methylguanine in position 37, next to the anticodon, in tRNA."; KO "K15445"; Scaffold001 rebuild exon 4941348 4941791 . - . gene_id "RvY_01710"; transcript_id "RvY_01710.1"; Scaffold001 rebuild exon 4941988 4942551 . - . gene_id "RvY_01710"; transcript_id "RvY_01710.1"; Scaffold001 rebuild transcript 4943165 4943783 . + . gene_id "RvY_01711"; transcript_id "RvY_01711.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4943165 4943483 . + . gene_id "RvY_01711"; transcript_id "RvY_01711.1"; Scaffold001 rebuild exon 4943527 4943783 . + . gene_id "RvY_01711"; transcript_id "RvY_01711.1"; Scaffold001 rebuild transcript 4943799 4943999 . + . gene_id "RvY_01712"; transcript_id "RvY_01712.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4943799 4943999 . + . gene_id "RvY_01712"; transcript_id "RvY_01712.1"; Scaffold001 rebuild transcript 4945793 4947224 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; annotation "hypothetical protein."; Pfam "[Hap2_elong] Histone acetylation protein 2"; Scaffold001 rebuild exon 4945793 4945859 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild exon 4945930 4946005 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild exon 4946081 4946161 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild exon 4946310 4946530 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild exon 4946608 4946807 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild exon 4946882 4946989 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild exon 4947066 4947224 . + . gene_id "RvY_01713"; transcript_id "RvY_01713.1"; Scaffold001 rebuild transcript 4947404 4949897 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; gene_name "ATPeF1A"; annotation "ATP synthase subunit alpha, mitochondrial"; Pfam "[ATP-synt_ab_C] ATP synthase alpha/beta chain, C terminal domain|[ATP-synt_ab_N] ATP synthase alpha/beta family, beta-barrel domain|[ATP-synt_ab] ATP synthase alpha/beta family, nucleotide-binding domain"; CDD "F0F1 ATP synthase subunit alpha; Validated"; EC "EC3.6.3.14"; KO "K02132"; similar_genes "ATPA_DROME(e-value:4.1e-239;bit-score:823.0)"; Scaffold001 rebuild exon 4947404 4947636 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4947763 4947907 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4947981 4948313 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4948544 4948844 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4948938 4949104 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4949194 4949367 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4949511 4949683 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild exon 4949753 4949897 . - . gene_id "RvY_01714"; transcript_id "RvY_01714.1"; Scaffold001 rebuild transcript 4950794 4951444 . - . gene_id "RvY_01715"; transcript_id "RvY_01715.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4950794 4950939 . - . gene_id "RvY_01715"; transcript_id "RvY_01715.1"; Scaffold001 rebuild exon 4951006 4951444 . - . gene_id "RvY_01715"; transcript_id "RvY_01715.1"; Scaffold001 rebuild transcript 4952856 4954688 . + . gene_id "RvY_01716"; transcript_id "RvY_01716.1"; gene_name "ANK"; annotation "putative Usher syndrome type-1G protein"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[SAM_1] SAM domain (Sterile alpha motif)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "USH1G_HUMAN(e-value:5.4e-31;bit-score:132.0)"; Scaffold001 rebuild exon 4952856 4953037 . + . gene_id "RvY_01716"; transcript_id "RvY_01716.1"; Scaffold001 rebuild exon 4953529 4953902 . + . gene_id "RvY_01716"; transcript_id "RvY_01716.1"; Scaffold001 rebuild exon 4953982 4954688 . + . gene_id "RvY_01716"; transcript_id "RvY_01716.1"; Scaffold001 rebuild transcript 4955434 4955961 . + . gene_id "RvY_01717"; transcript_id "RvY_01717.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4955434 4955710 . + . gene_id "RvY_01717"; transcript_id "RvY_01717.1"; Scaffold001 rebuild exon 4955792 4955961 . + . gene_id "RvY_01717"; transcript_id "RvY_01717.1"; Scaffold001 rebuild transcript 4955651 4956064 . + . gene_id "RvY_01717"; transcript_id "RvY_01717.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4955651 4955710 . + . gene_id "RvY_01717"; transcript_id "RvY_01717.2"; Scaffold001 rebuild exon 4955792 4956064 . + . gene_id "RvY_01717"; transcript_id "RvY_01717.2"; Scaffold001 rebuild transcript 4956497 4957632 . - . gene_id "RvY_01718"; transcript_id "RvY_01718.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4956497 4956585 . - . gene_id "RvY_01718"; transcript_id "RvY_01718.1"; Scaffold001 rebuild exon 4956646 4956963 . - . gene_id "RvY_01718"; transcript_id "RvY_01718.1"; Scaffold001 rebuild exon 4957227 4957422 . - . gene_id "RvY_01718"; transcript_id "RvY_01718.1"; Scaffold001 rebuild exon 4957552 4957632 . - . gene_id "RvY_01718"; transcript_id "RvY_01718.1"; Scaffold001 rebuild transcript 4958796 4960721 . + . gene_id "RvY_01719"; transcript_id "RvY_01719.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4958796 4958955 . + . gene_id "RvY_01719"; transcript_id "RvY_01719.1"; Scaffold001 rebuild exon 4959257 4959526 . + . gene_id "RvY_01719"; transcript_id "RvY_01719.1"; Scaffold001 rebuild exon 4960594 4960721 . + . gene_id "RvY_01719"; transcript_id "RvY_01719.1"; Scaffold001 rebuild transcript 4960959 4961413 . - . gene_id "RvY_01720"; transcript_id "RvY_01720.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4960959 4960993 . - . gene_id "RvY_01720"; transcript_id "RvY_01720.1"; Scaffold001 rebuild exon 4961266 4961413 . - . gene_id "RvY_01720"; transcript_id "RvY_01720.1"; Scaffold001 rebuild transcript 4961439 4962047 . + . gene_id "RvY_01721"; transcript_id "RvY_01721.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4961439 4962047 . + . gene_id "RvY_01721"; transcript_id "RvY_01721.1"; Scaffold001 rebuild transcript 4962168 4963367 . + . gene_id "RvY_01722"; transcript_id "RvY_01722.1"; gene_name "(1)PRK12678"; annotation "hypothetical protein."; CDD "(1)transcription termination factor Rho; Provisional"; Scaffold001 rebuild exon 4962168 4963367 . + . gene_id "RvY_01722"; transcript_id "RvY_01722.1"; Scaffold001 rebuild transcript 4963260 4964074 . + . gene_id "RvY_01722"; transcript_id "RvY_01722.2"; gene_name "(1)PRK12678"; annotation "hypothetical protein."; CDD "(1)transcription termination factor Rho; Provisional"; Scaffold001 rebuild exon 4963260 4963358 . + . gene_id "RvY_01722"; transcript_id "RvY_01722.2"; Scaffold001 rebuild exon 4963418 4963721 . + . gene_id "RvY_01722"; transcript_id "RvY_01722.2"; Scaffold001 rebuild exon 4963794 4964074 . + . gene_id "RvY_01722"; transcript_id "RvY_01722.2"; Scaffold001 rebuild transcript 4964241 4967006 . + . gene_id "RvY_01723"; transcript_id "RvY_01723.1"; gene_name "COG3889"; annotation "putative Integumentary mucin C.1"; Pfam "[Reprolysin] Reprolysin (M12B) family zinc metalloprotease"; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:1.6e-32;bit-score:137.0)"; Scaffold001 rebuild exon 4964241 4967006 . + . gene_id "RvY_01723"; transcript_id "RvY_01723.1"; Scaffold001 rebuild transcript 4970406 4974464 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; gene_name "EGF_CA"; annotation "hypothetical protein."; Pfam "[SEA]|[EGF_CA] Calcium-binding EGF domain"; CDD "Calcium-binding EGF-like domain."; Scaffold001 rebuild exon 4970406 4970643 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; Scaffold001 rebuild exon 4971510 4972802 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; Scaffold001 rebuild exon 4972881 4973008 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; Scaffold001 rebuild exon 4973070 4973686 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; Scaffold001 rebuild exon 4973915 4974110 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; Scaffold001 rebuild exon 4974174 4974464 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.1"; Scaffold001 rebuild transcript 4970406 4973690 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.2"; gene_name "EGF_CA"; annotation "hypothetical protein."; Pfam "[SEA]|[EGF_CA] Calcium-binding EGF domain"; CDD "Calcium-binding EGF-like domain."; Scaffold001 rebuild exon 4970406 4970643 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.2"; Scaffold001 rebuild exon 4971510 4972802 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.2"; Scaffold001 rebuild exon 4972881 4973008 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.2"; Scaffold001 rebuild exon 4973070 4973690 . + . gene_id "RvY_01724"; transcript_id "RvY_01724.2"; Scaffold001 rebuild transcript 4974824 4975842 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.1"; gene_name "(1)MYLAN(2)PTZ00184"; annotation "(1)myosin light chain, invertebrate(2)hypothetical protein."; Pfam "(1)[efhand] EF hand|(1)[EF_hand_3] EF hand|(1)[EF_hand_6] EF-hand domain pair|(1)[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; CDD "calmodulin; Provisional"; KO "(1)K12752"; similar_genes "(1)MLC2_DROME(e-value:1.1e-18;bit-score:91.0)(2)MYL1_HUMAN(e-value:2.0e-07;bit-score:54.0)"; Scaffold001 rebuild exon 4974824 4974852 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.1"; Scaffold001 rebuild exon 4974915 4974992 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.1"; Scaffold001 rebuild exon 4975109 4975273 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.1"; Scaffold001 rebuild exon 4975683 4975842 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.1"; Scaffold001 rebuild transcript 4975486 4975842 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.2"; gene_name "(1)MYLAN(2)PTZ00184"; annotation "(1)myosin light chain, invertebrate(2)hypothetical protein."; Pfam "(1)[efhand] EF hand|(1)[EF_hand_3] EF hand|(1)[EF_hand_6] EF-hand domain pair|(1)[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; CDD "calmodulin; Provisional"; KO "(1)K12752"; similar_genes "(1)MLC2_DROME(e-value:1.1e-18;bit-score:91.0)(2)MYL1_HUMAN(e-value:2.0e-07;bit-score:54.0)"; Scaffold001 rebuild exon 4975486 4975842 . - . gene_id "RvY_01725"; transcript_id "RvY_01725.2"; Scaffold001 rebuild transcript 4976815 4978930 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; gene_name "DUF1057"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[DUF1057] Alpha/beta hydrolase of unknown function (DUF1057)"; CDD "Alpha/beta hydrolase of unknown function (DUF1057). This family consists of several Caenorhabditis elegans specific proteins of unknown function. Members of this family have an alpha/beta hydrolase fold."; Scaffold001 rebuild exon 4976815 4977011 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; Scaffold001 rebuild exon 4977105 4977336 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; Scaffold001 rebuild exon 4977403 4977583 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; Scaffold001 rebuild exon 4977759 4977981 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; Scaffold001 rebuild exon 4978227 4978661 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; Scaffold001 rebuild exon 4978822 4978930 . - . gene_id "RvY_01726"; transcript_id "RvY_01726.1"; Scaffold001 rebuild transcript 4979839 4981300 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; gene_name "CTRL"; annotation "chymotrypsin-like protease [EC:3.4.21.-]"; Pfam "[DUF1986]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 4979839 4979979 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4980062 4980084 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4980161 4980198 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4980258 4980286 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4980357 4980575 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4980658 4980745 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4980815 4980974 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild exon 4981123 4981300 . + . gene_id "RvY_01727"; transcript_id "RvY_01727.1"; Scaffold001 rebuild transcript 4981519 4982283 . + . gene_id "RvY_01728"; transcript_id "RvY_01728.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4981519 4982283 . + . gene_id "RvY_01728"; transcript_id "RvY_01728.1"; Scaffold001 rebuild transcript 4982309 4982533 . + . gene_id "RvY_01729"; transcript_id "RvY_01729.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4982309 4982533 . + . gene_id "RvY_01729"; transcript_id "RvY_01729.1"; Scaffold001 rebuild transcript 4983088 4983333 . + . gene_id "RvY_01730"; transcript_id "RvY_01730.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4983088 4983333 . + . gene_id "RvY_01730"; transcript_id "RvY_01730.1"; Scaffold001 rebuild transcript 4983534 4983884 . + . gene_id "RvY_01731"; transcript_id "RvY_01731.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4983534 4983884 . + . gene_id "RvY_01731"; transcript_id "RvY_01731.1"; Scaffold001 rebuild transcript 4985713 4994343 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; gene_name "ADK"; annotation "hypothetical protein."; Pfam "[YHS]|[AAA_16] AAA ATPase domain|[AAA_22] AAA domain|[ADK] Adenylate kinase|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[AAA_19] Part of AAA domain|[DUF3508]|[AAA_17] AAA domain|[AAA_33] AAA domain"; CDD "Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates."; Scaffold001 rebuild exon 4985713 4985936 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4986019 4986242 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4986317 4986415 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4986496 4986815 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4986886 4986935 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4987022 4987239 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4987485 4987828 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4988211 4988429 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4988503 4989046 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4989265 4989785 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4989866 4990081 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4990216 4990510 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4990582 4990746 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4990838 4991256 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4991322 4991563 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4991652 4991720 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4991804 4991963 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4992041 4992221 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4992310 4992557 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4992637 4992906 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4992969 4993514 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4993573 4993674 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4993765 4993877 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild exon 4994169 4994343 . - . gene_id "RvY_01732"; transcript_id "RvY_01732.1"; Scaffold001 rebuild transcript 4995530 4998131 . - . gene_id "RvY_01733"; transcript_id "RvY_01733.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4995530 4995894 . - . gene_id "RvY_01733"; transcript_id "RvY_01733.1"; Scaffold001 rebuild exon 4997936 4998131 . - . gene_id "RvY_01733"; transcript_id "RvY_01733.1"; Scaffold001 rebuild transcript 4998034 4998522 . + . gene_id "RvY_01734"; transcript_id "RvY_01734.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 4998034 4998522 . + . gene_id "RvY_01734"; transcript_id "RvY_01734.1"; Scaffold001 rebuild transcript 5002484 5004854 . - . gene_id "RvY_01735"; transcript_id "RvY_01735.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5002484 5002654 . - . gene_id "RvY_01735"; transcript_id "RvY_01735.1"; Scaffold001 rebuild exon 5002827 5003072 . - . gene_id "RvY_01735"; transcript_id "RvY_01735.1"; Scaffold001 rebuild exon 5003730 5004216 . - . gene_id "RvY_01735"; transcript_id "RvY_01735.1"; Scaffold001 rebuild exon 5004832 5004854 . - . gene_id "RvY_01735"; transcript_id "RvY_01735.1"; Scaffold001 rebuild transcript 5004995 5005393 . - . gene_id "RvY_01736"; transcript_id "RvY_01736.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5004995 5005393 . - . gene_id "RvY_01736"; transcript_id "RvY_01736.1"; Scaffold001 rebuild transcript 5007135 5009114 . + . gene_id "RvY_01737"; transcript_id "RvY_01737.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 5007135 5007441 . + . gene_id "RvY_01737"; transcript_id "RvY_01737.1"; Scaffold001 rebuild exon 5007521 5008029 . + . gene_id "RvY_01737"; transcript_id "RvY_01737.1"; Scaffold001 rebuild exon 5008166 5008387 . + . gene_id "RvY_01737"; transcript_id "RvY_01737.1"; Scaffold001 rebuild exon 5008479 5009114 . + . gene_id "RvY_01737"; transcript_id "RvY_01737.1"; Scaffold001 rebuild transcript 5011532 5011714 . - . gene_id "RvY_01738"; transcript_id "RvY_01738.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5011532 5011714 . - . gene_id "RvY_01738"; transcript_id "RvY_01738.1"; Scaffold001 rebuild transcript 5013960 5015536 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold001 rebuild exon 5013960 5014048 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild exon 5014203 5014511 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild exon 5014585 5014750 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild exon 5014834 5014994 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild exon 5015069 5015251 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild exon 5015321 5015386 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild exon 5015446 5015536 . - . gene_id "RvY_01739"; transcript_id "RvY_01739.1"; Scaffold001 rebuild transcript 5016930 5017352 . + . gene_id "RvY_01740"; transcript_id "RvY_01740.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5016930 5017352 . + . gene_id "RvY_01740"; transcript_id "RvY_01740.1"; Scaffold001 rebuild transcript 5019924 5020253 . + . gene_id "RvY_01741"; transcript_id "RvY_01741.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5019924 5020253 . + . gene_id "RvY_01741"; transcript_id "RvY_01741.1"; Scaffold001 rebuild transcript 5021464 5021595 . - . gene_id "RvY_01742"; transcript_id "RvY_01742.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5021464 5021595 . - . gene_id "RvY_01742"; transcript_id "RvY_01742.1"; Scaffold001 rebuild transcript 5024904 5028380 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERC_AEDAE(e-value:5.0e-21;bit-score:99.0)"; Scaffold001 rebuild exon 5024904 5025388 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5025458 5025547 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5025685 5025851 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5025933 5026084 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5026144 5026228 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5026314 5026350 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5026471 5026586 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5026645 5026695 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5026764 5026891 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5026950 5027638 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5027824 5027996 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5028092 5028194 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild exon 5028311 5028380 . + . gene_id "RvY_01743"; transcript_id "RvY_01743.1"; Scaffold001 rebuild transcript 5029892 5030487 . + . gene_id "RvY_01744"; transcript_id "RvY_01744.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5029892 5030158 . + . gene_id "RvY_01744"; transcript_id "RvY_01744.1"; Scaffold001 rebuild exon 5030218 5030487 . + . gene_id "RvY_01744"; transcript_id "RvY_01744.1"; Scaffold001 rebuild transcript 5030770 5034287 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; annotation "putative Xenotropic and polytropic retrovirus receptor 1 homolog"; Pfam "[EXS] EXS family|[SPX]"; similar_genes "XPR1_XENTR(e-value:3.2e-33;bit-score:139.0)"; Scaffold001 rebuild exon 5030770 5031034 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5031105 5031281 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5031554 5032025 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5032113 5032266 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5032366 5032560 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5032616 5033122 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5033302 5033403 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5033535 5033818 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5033892 5034017 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5034089 5034140 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild exon 5034219 5034287 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.1"; Scaffold001 rebuild transcript 5031065 5034287 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; annotation "putative Xenotropic and polytropic retrovirus receptor 1 homolog"; Pfam "[EXS] EXS family|[SPX]"; similar_genes "XPR1_XENTR(e-value:3.2e-33;bit-score:139.0)"; Scaffold001 rebuild exon 5031065 5031281 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5031554 5032025 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5032113 5032266 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5032366 5032560 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5032616 5033122 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5033302 5033403 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5033535 5033818 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5033892 5034017 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5034089 5034140 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild exon 5034219 5034287 . - . gene_id "RvY_01745"; transcript_id "RvY_01745.2"; Scaffold001 rebuild transcript 5036853 5042341 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.1"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold001 rebuild exon 5036853 5037295 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.1"; Scaffold001 rebuild exon 5040391 5040610 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.1"; Scaffold001 rebuild exon 5040890 5041007 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.1"; Scaffold001 rebuild exon 5041224 5041604 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.1"; Scaffold001 rebuild exon 5041944 5042341 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.1"; Scaffold001 rebuild transcript 5039682 5042341 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.2"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold001 rebuild exon 5039682 5039917 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.2"; Scaffold001 rebuild exon 5040391 5040610 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.2"; Scaffold001 rebuild exon 5040890 5041007 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.2"; Scaffold001 rebuild exon 5041224 5041604 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.2"; Scaffold001 rebuild exon 5041944 5042341 . + . gene_id "RvY_01746"; transcript_id "RvY_01746.2"; Scaffold001 rebuild transcript 5038040 5039213 . - . gene_id "RvY_01747"; transcript_id "RvY_01747.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5038040 5038126 . - . gene_id "RvY_01747"; transcript_id "RvY_01747.1"; Scaffold001 rebuild exon 5038926 5039213 . - . gene_id "RvY_01747"; transcript_id "RvY_01747.1"; Scaffold001 rebuild transcript 5044295 5044798 . - . gene_id "RvY_01748"; transcript_id "RvY_01748.1"; annotation "hypothetical protein."; Pfam "[ParcG] Parkin co-regulated protein"; similar_genes "PACRG_MOUSE(e-value:6.4e-19;bit-score:92.0)"; Scaffold001 rebuild exon 5044295 5044396 . - . gene_id "RvY_01748"; transcript_id "RvY_01748.1"; Scaffold001 rebuild exon 5044480 5044510 . - . gene_id "RvY_01748"; transcript_id "RvY_01748.1"; Scaffold001 rebuild exon 5044575 5044798 . - . gene_id "RvY_01748"; transcript_id "RvY_01748.1"; Scaffold001 rebuild transcript 5045697 5046153 . - . gene_id "RvY_01749"; transcript_id "RvY_01749.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5045697 5045846 . - . gene_id "RvY_01749"; transcript_id "RvY_01749.1"; Scaffold001 rebuild exon 5046013 5046153 . - . gene_id "RvY_01749"; transcript_id "RvY_01749.1"; Scaffold001 rebuild transcript 5046534 5047820 . + . gene_id "RvY_01750"; transcript_id "RvY_01750.1"; gene_name "KDELR"; annotation "ER lumen protein retaining receptor 2"; Pfam "[ER_lumen_recept] ER lumen protein retaining receptor"; CDD "ER lumen protein retaining receptor [Intracellular trafficking and secretion]"; KO "K10949"; similar_genes "ERD22_HUMAN(e-value:4.4e-94;bit-score:342.0)"; Scaffold001 rebuild exon 5046534 5046624 . + . gene_id "RvY_01750"; transcript_id "RvY_01750.1"; Scaffold001 rebuild exon 5046780 5046937 . + . gene_id "RvY_01750"; transcript_id "RvY_01750.1"; Scaffold001 rebuild exon 5047002 5047103 . + . gene_id "RvY_01750"; transcript_id "RvY_01750.1"; Scaffold001 rebuild exon 5047447 5047699 . + . gene_id "RvY_01750"; transcript_id "RvY_01750.1"; Scaffold001 rebuild exon 5047786 5047820 . + . gene_id "RvY_01750"; transcript_id "RvY_01750.1"; Scaffold001 rebuild transcript 5048810 5049640 . - . gene_id "RvY_01751"; transcript_id "RvY_01751.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5048810 5048985 . - . gene_id "RvY_01751"; transcript_id "RvY_01751.1"; Scaffold001 rebuild exon 5049541 5049640 . - . gene_id "RvY_01751"; transcript_id "RvY_01751.1"; Scaffold001 rebuild transcript 5049653 5050708 . + . gene_id "RvY_01752"; transcript_id "RvY_01752.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5049653 5050708 . + . gene_id "RvY_01752"; transcript_id "RvY_01752.1"; Scaffold001 rebuild transcript 5051070 5052030 . - . gene_id "RvY_01753"; transcript_id "RvY_01753.1"; gene_name "(1)Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "(1)Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold001 rebuild exon 5051070 5051495 . - . gene_id "RvY_01753"; transcript_id "RvY_01753.1"; Scaffold001 rebuild exon 5051662 5052030 . - . gene_id "RvY_01753"; transcript_id "RvY_01753.1"; Scaffold001 rebuild transcript 5051533 5052354 . - . gene_id "RvY_01753"; transcript_id "RvY_01753.2"; gene_name "(1)Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "(1)Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold001 rebuild exon 5051533 5052248 . - . gene_id "RvY_01753"; transcript_id "RvY_01753.2"; Scaffold001 rebuild exon 5052303 5052354 . - . gene_id "RvY_01753"; transcript_id "RvY_01753.2"; Scaffold001 rebuild transcript 5053664 5054422 . + . gene_id "RvY_01754"; transcript_id "RvY_01754.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5053664 5054422 . + . gene_id "RvY_01754"; transcript_id "RvY_01754.1"; Scaffold001 rebuild transcript 5060014 5063684 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; gene_name "COL18A"; annotation "collagen, type XVIII, alpha"; Pfam "[Collagen] Collagen triple helix repeat (20 copies)|[Endostatin] Collagenase NC10 and Endostatin"; KO "K06823"; similar_genes "COIA1_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold001 rebuild exon 5060014 5060841 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5060918 5061046 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5061119 5061322 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5061405 5061485 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5061546 5062339 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5062648 5062868 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5063052 5063280 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild exon 5063573 5063684 . - . gene_id "RvY_01755"; transcript_id "RvY_01755.1"; Scaffold001 rebuild transcript 5064904 5065101 . - . gene_id "RvY_01756"; transcript_id "RvY_01756.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5064904 5065101 . - . gene_id "RvY_01756"; transcript_id "RvY_01756.1"; Scaffold001 rebuild transcript 5066032 5066361 . - . gene_id "RvY_01757"; transcript_id "RvY_01757.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5066032 5066361 . - . gene_id "RvY_01757"; transcript_id "RvY_01757.1"; Scaffold001 rebuild transcript 5067322 5069216 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; gene_name "WD40"; annotation "putative WD repeat-containing protein 16"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR16_MOUSE(e-value:8.9e-27;bit-score:118.0)"; Scaffold001 rebuild exon 5067322 5067434 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5067498 5067597 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5067670 5067841 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5067928 5068102 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5068166 5068223 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5068281 5068396 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5068473 5068621 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5068702 5068873 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild exon 5069087 5069216 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.1"; Scaffold001 rebuild transcript 5067969 5069704 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; gene_name "WD40"; annotation "putative WD repeat-containing protein 16"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR16_MOUSE(e-value:8.9e-27;bit-score:118.0)"; Scaffold001 rebuild exon 5067969 5068102 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild exon 5068166 5068223 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild exon 5068281 5068396 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild exon 5068473 5068621 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild exon 5068702 5068873 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild exon 5069087 5069212 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild exon 5069278 5069704 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.2"; Scaffold001 rebuild transcript 5067969 5068877 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.3"; gene_name "WD40"; annotation "putative WD repeat-containing protein 16"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR16_MOUSE(e-value:8.9e-27;bit-score:118.0)"; Scaffold001 rebuild exon 5067969 5068102 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.3"; Scaffold001 rebuild exon 5068166 5068223 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.3"; Scaffold001 rebuild exon 5068281 5068396 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.3"; Scaffold001 rebuild exon 5068473 5068621 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.3"; Scaffold001 rebuild exon 5068702 5068877 . + . gene_id "RvY_01758"; transcript_id "RvY_01758.3"; Scaffold001 rebuild transcript 5070653 5071526 . - . gene_id "RvY_01759"; transcript_id "RvY_01759.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5070653 5070711 . - . gene_id "RvY_01759"; transcript_id "RvY_01759.1"; Scaffold001 rebuild exon 5070800 5070995 . - . gene_id "RvY_01759"; transcript_id "RvY_01759.1"; Scaffold001 rebuild exon 5071125 5071232 . - . gene_id "RvY_01759"; transcript_id "RvY_01759.1"; Scaffold001 rebuild exon 5071404 5071526 . - . gene_id "RvY_01759"; transcript_id "RvY_01759.1"; Scaffold001 rebuild transcript 5074090 5074586 . - . gene_id "RvY_01760"; transcript_id "RvY_01760.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5074090 5074195 . - . gene_id "RvY_01760"; transcript_id "RvY_01760.1"; Scaffold001 rebuild exon 5074269 5074425 . - . gene_id "RvY_01760"; transcript_id "RvY_01760.1"; Scaffold001 rebuild exon 5074532 5074586 . - . gene_id "RvY_01760"; transcript_id "RvY_01760.1"; Scaffold001 rebuild transcript 5076120 5078443 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; gene_name "PTEN"; annotation "Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"; Pfam "[PTEN_C2] C2 domain of PTEN tumour-suppressor protein|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]"; EC "EC3.1.3.67"; KO "K01110"; similar_genes "PTEN_MOUSE(e-value:1.4e-80;bit-score:297.0)"; Scaffold001 rebuild exon 5076120 5076284 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5076359 5076727 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5077085 5077423 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5077484 5077591 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5077667 5077762 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5077836 5077959 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5078203 5078287 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild exon 5078356 5078443 . - . gene_id "RvY_01761"; transcript_id "RvY_01761.1"; Scaffold001 rebuild transcript 5079342 5079680 . + . gene_id "RvY_01762"; transcript_id "RvY_01762.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5079342 5079680 . + . gene_id "RvY_01762"; transcript_id "RvY_01762.1"; Scaffold001 rebuild transcript 5083316 5083755 . + . gene_id "RvY_01763"; transcript_id "RvY_01763.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5083316 5083391 . + . gene_id "RvY_01763"; transcript_id "RvY_01763.1"; Scaffold001 rebuild exon 5083625 5083755 . + . gene_id "RvY_01763"; transcript_id "RvY_01763.1"; Scaffold001 rebuild transcript 5084135 5084594 . + . gene_id "RvY_01764"; transcript_id "RvY_01764.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5084135 5084214 . + . gene_id "RvY_01764"; transcript_id "RvY_01764.1"; Scaffold001 rebuild exon 5084501 5084594 . + . gene_id "RvY_01764"; transcript_id "RvY_01764.1"; Scaffold001 rebuild transcript 5085431 5087046 . + . gene_id "RvY_01765"; transcript_id "RvY_01765.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; similar_genes "RDX_DROME(e-value:4.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 5085431 5086099 . + . gene_id "RvY_01765"; transcript_id "RvY_01765.1"; Scaffold001 rebuild exon 5086378 5087046 . + . gene_id "RvY_01765"; transcript_id "RvY_01765.1"; Scaffold001 rebuild transcript 5087639 5088855 . - . gene_id "RvY_01766"; transcript_id "RvY_01766.1"; gene_name "B3GNT7"; annotation "beta-1,3-N-acetylglucosaminyltransferase 7 [EC:2.4.1.-]"; Pfam "[Galactosyl_T] Galactosyltransferase"; EC "EC2.4.1.-"; KO "K09664"; Scaffold001 rebuild exon 5087639 5088273 . - . gene_id "RvY_01766"; transcript_id "RvY_01766.1"; Scaffold001 rebuild exon 5088393 5088855 . - . gene_id "RvY_01766"; transcript_id "RvY_01766.1"; Scaffold001 rebuild transcript 5090026 5091091 . - . gene_id "RvY_01767"; transcript_id "RvY_01767.1"; gene_name "sodA"; annotation "Superoxide dismutase [Mn], mitochondrial"; Pfam "[Sod_Fe_C] Iron/manganese superoxide dismutases, C-terminal domain|[Sod_Fe_N] Iron/manganese superoxide dismutases, alpha-hairpin domain"; CDD "Superoxide dismutase [Inorganic ion transport and metabolism]"; EC "EC1.15.1.1"; KO "K04564"; similar_genes "SODM_HYLLA(e-value:3.9e-78;bit-score:289.0)"; Scaffold001 rebuild exon 5090026 5090177 . - . gene_id "RvY_01767"; transcript_id "RvY_01767.1"; Scaffold001 rebuild exon 5090279 5090458 . - . gene_id "RvY_01767"; transcript_id "RvY_01767.1"; Scaffold001 rebuild exon 5090534 5090650 . - . gene_id "RvY_01767"; transcript_id "RvY_01767.1"; Scaffold001 rebuild exon 5090791 5091002 . - . gene_id "RvY_01767"; transcript_id "RvY_01767.1"; Scaffold001 rebuild exon 5091060 5091091 . - . gene_id "RvY_01767"; transcript_id "RvY_01767.1"; Scaffold001 rebuild transcript 5091582 5092282 . + . gene_id "RvY_01768"; transcript_id "RvY_01768.1"; annotation "hypothetical protein."; Pfam "[DUF1352]"; Scaffold001 rebuild exon 5091582 5091667 . + . gene_id "RvY_01768"; transcript_id "RvY_01768.1"; Scaffold001 rebuild exon 5091805 5092282 . + . gene_id "RvY_01768"; transcript_id "RvY_01768.1"; Scaffold001 rebuild transcript 5093675 5095814 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; gene_name "PLA2G"; annotation "phospholipase A2 [EC:3.1.1.4]"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Patatin] Patatin-like phospholipase|[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus."; EC "EC3.1.1.4"; KO "K01047"; similar_genes "PA2G6_HUMAN(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 5093675 5093770 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; Scaffold001 rebuild exon 5093843 5093971 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; Scaffold001 rebuild exon 5094044 5094220 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; Scaffold001 rebuild exon 5094304 5094467 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; Scaffold001 rebuild exon 5094554 5094803 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; Scaffold001 rebuild exon 5094903 5095814 . - . gene_id "RvY_01769"; transcript_id "RvY_01769.1"; Scaffold001 rebuild transcript 5096588 5097195 . - . gene_id "RvY_01770"; transcript_id "RvY_01770.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5096588 5096920 . - . gene_id "RvY_01770"; transcript_id "RvY_01770.1"; Scaffold001 rebuild exon 5097112 5097195 . - . gene_id "RvY_01770"; transcript_id "RvY_01770.1"; Scaffold001 rebuild transcript 5097616 5101052 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold001 rebuild exon 5097616 5097907 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; Scaffold001 rebuild exon 5098092 5098408 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; Scaffold001 rebuild exon 5098655 5099197 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; Scaffold001 rebuild exon 5099570 5099876 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; Scaffold001 rebuild exon 5099954 5100042 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; Scaffold001 rebuild exon 5100138 5101052 . + . gene_id "RvY_01771"; transcript_id "RvY_01771.1"; Scaffold001 rebuild transcript 5105150 5106008 . - . gene_id "RvY_01772"; transcript_id "RvY_01772.1"; gene_name "VWA_26S_proteasome_subunit"; annotation "hypothetical protein."; CDD "26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association."; similar_genes "PSMD4_MOUSE(e-value:5.0e-23;bit-score:106.0)"; Scaffold001 rebuild exon 5105150 5105410 . - . gene_id "RvY_01772"; transcript_id "RvY_01772.1"; Scaffold001 rebuild exon 5105469 5105622 . - . gene_id "RvY_01772"; transcript_id "RvY_01772.1"; Scaffold001 rebuild exon 5105757 5105887 . - . gene_id "RvY_01772"; transcript_id "RvY_01772.1"; Scaffold001 rebuild exon 5105958 5106008 . - . gene_id "RvY_01772"; transcript_id "RvY_01772.1"; Scaffold001 rebuild transcript 5107119 5108394 . + . gene_id "RvY_01773"; transcript_id "RvY_01773.1"; gene_name "COG5038"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]"; Scaffold001 rebuild exon 5107119 5107731 . + . gene_id "RvY_01773"; transcript_id "RvY_01773.1"; Scaffold001 rebuild exon 5107934 5108394 . + . gene_id "RvY_01773"; transcript_id "RvY_01773.1"; Scaffold001 rebuild transcript 5110459 5112869 . + . gene_id "RvY_01774"; transcript_id "RvY_01774.1"; annotation "hypothetical protein."; Pfam "[C2]"; Scaffold001 rebuild exon 5110459 5110578 . + . gene_id "RvY_01774"; transcript_id "RvY_01774.1"; Scaffold001 rebuild exon 5111727 5112869 . + . gene_id "RvY_01774"; transcript_id "RvY_01774.1"; Scaffold001 rebuild transcript 5113082 5115646 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5113082 5113167 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild exon 5114064 5114348 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild exon 5114423 5114485 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild exon 5114555 5114653 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild exon 5114750 5114812 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild exon 5114942 5115362 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild exon 5115494 5115646 . - . gene_id "RvY_01775"; transcript_id "RvY_01775.1"; Scaffold001 rebuild transcript 5115696 5121854 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5115696 5115713 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5116341 5116551 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5116628 5117140 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5117287 5117579 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5117670 5118247 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5118314 5118852 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5120724 5121053 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild exon 5121508 5121854 . + . gene_id "RvY_01776"; transcript_id "RvY_01776.1"; Scaffold001 rebuild transcript 5125237 5126575 . - . gene_id "RvY_01777"; transcript_id "RvY_01777.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5125237 5125646 . - . gene_id "RvY_01777"; transcript_id "RvY_01777.1"; Scaffold001 rebuild exon 5125708 5126336 . - . gene_id "RvY_01777"; transcript_id "RvY_01777.1"; Scaffold001 rebuild exon 5126424 5126575 . - . gene_id "RvY_01777"; transcript_id "RvY_01777.1"; Scaffold001 rebuild transcript 5126611 5130219 . - . gene_id "RvY_01778"; transcript_id "RvY_01778.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5126611 5127113 . - . gene_id "RvY_01778"; transcript_id "RvY_01778.1"; Scaffold001 rebuild exon 5127208 5128124 . - . gene_id "RvY_01778"; transcript_id "RvY_01778.1"; Scaffold001 rebuild exon 5128309 5128580 . - . gene_id "RvY_01778"; transcript_id "RvY_01778.1"; Scaffold001 rebuild exon 5130124 5130219 . - . gene_id "RvY_01778"; transcript_id "RvY_01778.1"; Scaffold001 rebuild transcript 5130787 5134488 . - . gene_id "RvY_01779"; transcript_id "RvY_01779.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5130787 5130884 . - . gene_id "RvY_01779"; transcript_id "RvY_01779.1"; Scaffold001 rebuild exon 5134155 5134488 . - . gene_id "RvY_01779"; transcript_id "RvY_01779.1"; Scaffold001 rebuild transcript 5132686 5133003 . - . gene_id "RvY_01779"; transcript_id "RvY_01779.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5132686 5133003 . - . gene_id "RvY_01779"; transcript_id "RvY_01779.2"; Scaffold001 rebuild transcript 5135501 5136290 . - . gene_id "RvY_01780"; transcript_id "RvY_01780.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5135501 5135633 . - . gene_id "RvY_01780"; transcript_id "RvY_01780.1"; Scaffold001 rebuild exon 5135734 5136290 . - . gene_id "RvY_01780"; transcript_id "RvY_01780.1"; Scaffold001 rebuild transcript 5136343 5137836 . - . gene_id "RvY_01781"; transcript_id "RvY_01781.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5136343 5136414 . - . gene_id "RvY_01781"; transcript_id "RvY_01781.1"; Scaffold001 rebuild exon 5136502 5136686 . - . gene_id "RvY_01781"; transcript_id "RvY_01781.1"; Scaffold001 rebuild exon 5136769 5137159 . - . gene_id "RvY_01781"; transcript_id "RvY_01781.1"; Scaffold001 rebuild exon 5137307 5137459 . - . gene_id "RvY_01781"; transcript_id "RvY_01781.1"; Scaffold001 rebuild exon 5137561 5137836 . - . gene_id "RvY_01781"; transcript_id "RvY_01781.1"; Scaffold001 rebuild transcript 5138623 5140646 . - . gene_id "RvY_01782"; transcript_id "RvY_01782.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5138623 5138737 . - . gene_id "RvY_01782"; transcript_id "RvY_01782.1"; Scaffold001 rebuild exon 5139751 5140646 . - . gene_id "RvY_01782"; transcript_id "RvY_01782.1"; Scaffold001 rebuild transcript 5140736 5141989 . - . gene_id "RvY_01783"; transcript_id "RvY_01783.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5140736 5141006 . - . gene_id "RvY_01783"; transcript_id "RvY_01783.1"; Scaffold001 rebuild exon 5141087 5141714 . - . gene_id "RvY_01783"; transcript_id "RvY_01783.1"; Scaffold001 rebuild exon 5141866 5141989 . - . gene_id "RvY_01783"; transcript_id "RvY_01783.1"; Scaffold001 rebuild transcript 5142625 5143045 . + . gene_id "RvY_01784"; transcript_id "RvY_01784.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5142625 5142739 . + . gene_id "RvY_01784"; transcript_id "RvY_01784.1"; Scaffold001 rebuild exon 5142870 5143045 . + . gene_id "RvY_01784"; transcript_id "RvY_01784.1"; Scaffold001 rebuild transcript 5144071 5144601 . + . gene_id "RvY_01785"; transcript_id "RvY_01785.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5144071 5144257 . + . gene_id "RvY_01785"; transcript_id "RvY_01785.1"; Scaffold001 rebuild exon 5144426 5144601 . + . gene_id "RvY_01785"; transcript_id "RvY_01785.1"; Scaffold001 rebuild transcript 5148379 5149490 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.1"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold001 rebuild exon 5148379 5148667 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.1"; Scaffold001 rebuild exon 5148827 5149126 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.1"; Scaffold001 rebuild exon 5149196 5149369 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.1"; Scaffold001 rebuild exon 5149477 5149490 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.1"; Scaffold001 rebuild transcript 5148379 5149155 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.2"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold001 rebuild exon 5148379 5148667 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.2"; Scaffold001 rebuild exon 5148827 5149155 . + . gene_id "RvY_01786"; transcript_id "RvY_01786.2"; Scaffold001 rebuild transcript 5150328 5151025 . - . gene_id "RvY_01787"; transcript_id "RvY_01787.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5150328 5150507 . - . gene_id "RvY_01787"; transcript_id "RvY_01787.1"; Scaffold001 rebuild exon 5150576 5150810 . - . gene_id "RvY_01787"; transcript_id "RvY_01787.1"; Scaffold001 rebuild exon 5150955 5151025 . - . gene_id "RvY_01787"; transcript_id "RvY_01787.1"; Scaffold001 rebuild transcript 5152099 5153821 . + . gene_id "RvY_01788"; transcript_id "RvY_01788.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5152099 5152348 . + . gene_id "RvY_01788"; transcript_id "RvY_01788.1"; Scaffold001 rebuild exon 5152422 5152667 . + . gene_id "RvY_01788"; transcript_id "RvY_01788.1"; Scaffold001 rebuild exon 5152780 5153031 . + . gene_id "RvY_01788"; transcript_id "RvY_01788.1"; Scaffold001 rebuild exon 5153306 5153396 . + . gene_id "RvY_01788"; transcript_id "RvY_01788.1"; Scaffold001 rebuild exon 5153704 5153821 . + . gene_id "RvY_01788"; transcript_id "RvY_01788.1"; Scaffold001 rebuild transcript 5154207 5154452 . + . gene_id "RvY_01789"; transcript_id "RvY_01789.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5154207 5154452 . + . gene_id "RvY_01789"; transcript_id "RvY_01789.1"; Scaffold001 rebuild transcript 5154708 5156621 . - . gene_id "RvY_01790"; transcript_id "RvY_01790.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5154708 5156227 . - . gene_id "RvY_01790"; transcript_id "RvY_01790.1"; Scaffold001 rebuild exon 5156378 5156621 . - . gene_id "RvY_01790"; transcript_id "RvY_01790.1"; Scaffold001 rebuild transcript 5163560 5163794 . - . gene_id "RvY_01791"; transcript_id "RvY_01791.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5163560 5163666 . - . gene_id "RvY_01791"; transcript_id "RvY_01791.1"; Scaffold001 rebuild exon 5163737 5163794 . - . gene_id "RvY_01791"; transcript_id "RvY_01791.1"; Scaffold001 rebuild transcript 5169621 5170124 . - . gene_id "RvY_01792"; transcript_id "RvY_01792.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5169621 5169965 . - . gene_id "RvY_01792"; transcript_id "RvY_01792.1"; Scaffold001 rebuild exon 5170116 5170124 . - . gene_id "RvY_01792"; transcript_id "RvY_01792.1"; Scaffold001 rebuild transcript 5171037 5171297 . - . gene_id "RvY_01793"; transcript_id "RvY_01793.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5171037 5171297 . - . gene_id "RvY_01793"; transcript_id "RvY_01793.1"; Scaffold001 rebuild transcript 5171386 5171999 . - . gene_id "RvY_01794"; transcript_id "RvY_01794.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5171386 5171589 . - . gene_id "RvY_01794"; transcript_id "RvY_01794.1"; Scaffold001 rebuild exon 5171904 5171999 . - . gene_id "RvY_01794"; transcript_id "RvY_01794.1"; Scaffold001 rebuild transcript 5172952 5173845 . - . gene_id "RvY_01795"; transcript_id "RvY_01795.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5172952 5173160 . - . gene_id "RvY_01795"; transcript_id "RvY_01795.1"; Scaffold001 rebuild exon 5173221 5173509 . - . gene_id "RvY_01795"; transcript_id "RvY_01795.1"; Scaffold001 rebuild exon 5173684 5173845 . - . gene_id "RvY_01795"; transcript_id "RvY_01795.1"; Scaffold001 rebuild transcript 5175401 5176192 . + . gene_id "RvY_01796"; transcript_id "RvY_01796.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5175401 5175844 . + . gene_id "RvY_01796"; transcript_id "RvY_01796.1"; Scaffold001 rebuild exon 5176037 5176192 . + . gene_id "RvY_01796"; transcript_id "RvY_01796.1"; Scaffold001 rebuild transcript 5176834 5177378 . + . gene_id "RvY_01797"; transcript_id "RvY_01797.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5176834 5177041 . + . gene_id "RvY_01797"; transcript_id "RvY_01797.1"; Scaffold001 rebuild exon 5177182 5177378 . + . gene_id "RvY_01797"; transcript_id "RvY_01797.1"; Scaffold001 rebuild transcript 5177988 5178789 . + . gene_id "RvY_01798"; transcript_id "RvY_01798.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5177988 5178080 . + . gene_id "RvY_01798"; transcript_id "RvY_01798.1"; Scaffold001 rebuild exon 5178146 5178280 . + . gene_id "RvY_01798"; transcript_id "RvY_01798.1"; Scaffold001 rebuild exon 5178409 5178789 . + . gene_id "RvY_01798"; transcript_id "RvY_01798.1"; Scaffold001 rebuild transcript 5179503 5179721 . - . gene_id "RvY_01799"; transcript_id "RvY_01799.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5179503 5179721 . - . gene_id "RvY_01799"; transcript_id "RvY_01799.1"; Scaffold001 rebuild transcript 5182282 5182563 . + . gene_id "RvY_01800"; transcript_id "RvY_01800.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5182282 5182563 . + . gene_id "RvY_01800"; transcript_id "RvY_01800.1"; Scaffold001 rebuild transcript 5183284 5185205 . + . gene_id "RvY_01801"; transcript_id "RvY_01801.1"; gene_name "RT_LTR"; annotation "hypothetical protein."; CDD "RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold001 rebuild exon 5183284 5184490 . + . gene_id "RvY_01801"; transcript_id "RvY_01801.1"; Scaffold001 rebuild exon 5184880 5185205 . + . gene_id "RvY_01801"; transcript_id "RvY_01801.1"; Scaffold001 rebuild transcript 5186090 5187019 . + . gene_id "RvY_01802"; transcript_id "RvY_01802.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5186090 5186206 . + . gene_id "RvY_01802"; transcript_id "RvY_01802.1"; Scaffold001 rebuild exon 5186293 5186496 . + . gene_id "RvY_01802"; transcript_id "RvY_01802.1"; Scaffold001 rebuild exon 5186990 5187019 . + . gene_id "RvY_01802"; transcript_id "RvY_01802.1"; Scaffold001 rebuild transcript 5187053 5187343 . - . gene_id "RvY_01803"; transcript_id "RvY_01803.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5187053 5187155 . - . gene_id "RvY_01803"; transcript_id "RvY_01803.1"; Scaffold001 rebuild exon 5187276 5187343 . - . gene_id "RvY_01803"; transcript_id "RvY_01803.1"; Scaffold001 rebuild transcript 5187536 5188798 . + . gene_id "RvY_01804"; transcript_id "RvY_01804.1"; annotation "hypothetical protein."; Pfam "[rve] Integrase core domain"; Scaffold001 rebuild exon 5187536 5188798 . + . gene_id "RvY_01804"; transcript_id "RvY_01804.1"; Scaffold001 rebuild transcript 5188846 5189958 . + . gene_id "RvY_01805"; transcript_id "RvY_01805.1"; annotation "hypothetical protein."; Pfam "[Asp_protease_2] Aspartyl protease"; Scaffold001 rebuild exon 5188846 5189958 . + . gene_id "RvY_01805"; transcript_id "RvY_01805.1"; Scaffold001 rebuild transcript 5190029 5191624 . + . gene_id "RvY_01806"; transcript_id "RvY_01806.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5190029 5191624 . + . gene_id "RvY_01806"; transcript_id "RvY_01806.1"; Scaffold001 rebuild transcript 5190572 5191624 . + . gene_id "RvY_01806"; transcript_id "RvY_01806.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5190572 5191423 . + . gene_id "RvY_01806"; transcript_id "RvY_01806.2"; Scaffold001 rebuild exon 5191511 5191624 . + . gene_id "RvY_01806"; transcript_id "RvY_01806.2"; Scaffold001 rebuild transcript 5190644 5191063 . - . gene_id "RvY_01807"; transcript_id "RvY_01807.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5190644 5191063 . - . gene_id "RvY_01807"; transcript_id "RvY_01807.1"; Scaffold001 rebuild transcript 5191950 5192958 . - . gene_id "RvY_01808"; transcript_id "RvY_01808.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5191950 5192035 . - . gene_id "RvY_01808"; transcript_id "RvY_01808.1"; Scaffold001 rebuild exon 5192760 5192958 . - . gene_id "RvY_01808"; transcript_id "RvY_01808.1"; Scaffold001 rebuild transcript 5193020 5193619 . + . gene_id "RvY_01809"; transcript_id "RvY_01809.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5193020 5193160 . + . gene_id "RvY_01809"; transcript_id "RvY_01809.1"; Scaffold001 rebuild exon 5193257 5193446 . + . gene_id "RvY_01809"; transcript_id "RvY_01809.1"; Scaffold001 rebuild exon 5193531 5193619 . + . gene_id "RvY_01809"; transcript_id "RvY_01809.1"; Scaffold001 rebuild transcript 5195549 5199528 . - . gene_id "RvY_01810"; transcript_id "RvY_01810.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5195549 5195578 . - . gene_id "RvY_01810"; transcript_id "RvY_01810.1"; Scaffold001 rebuild exon 5195720 5195810 . - . gene_id "RvY_01810"; transcript_id "RvY_01810.1"; Scaffold001 rebuild exon 5199401 5199528 . - . gene_id "RvY_01810"; transcript_id "RvY_01810.1"; Scaffold001 rebuild transcript 5196720 5198080 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; gene_name "(1)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold001 rebuild exon 5196720 5196762 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; Scaffold001 rebuild exon 5196822 5197061 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; Scaffold001 rebuild exon 5197128 5197207 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; Scaffold001 rebuild exon 5197282 5197357 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; Scaffold001 rebuild exon 5197442 5197780 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; Scaffold001 rebuild exon 5197851 5198080 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.1"; Scaffold001 rebuild transcript 5196081 5196896 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.2"; gene_name "(1)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold001 rebuild exon 5196081 5196335 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.2"; Scaffold001 rebuild exon 5196408 5196896 . + . gene_id "RvY_01811"; transcript_id "RvY_01811.2"; Scaffold001 rebuild transcript 5199758 5199973 . - . gene_id "RvY_01812"; transcript_id "RvY_01812.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5199758 5199973 . - . gene_id "RvY_01812"; transcript_id "RvY_01812.1"; Scaffold001 rebuild transcript 5200878 5201883 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5200878 5201201 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.1"; Scaffold001 rebuild exon 5201492 5201734 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.1"; Scaffold001 rebuild exon 5201827 5201883 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.1"; Scaffold001 rebuild transcript 5200079 5201093 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5200079 5200156 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.2"; Scaffold001 rebuild exon 5200231 5200335 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.2"; Scaffold001 rebuild exon 5200424 5200516 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.2"; Scaffold001 rebuild exon 5200736 5200822 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.2"; Scaffold001 rebuild exon 5200902 5201093 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.2"; Scaffold001 rebuild transcript 5201099 5201930 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5201099 5201201 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.3"; Scaffold001 rebuild exon 5201492 5201734 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.3"; Scaffold001 rebuild exon 5201827 5201930 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.3"; Scaffold001 rebuild transcript 5200129 5201014 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5200129 5200156 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.4"; Scaffold001 rebuild exon 5200231 5200335 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.4"; Scaffold001 rebuild exon 5200424 5200516 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.4"; Scaffold001 rebuild exon 5200736 5200822 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.4"; Scaffold001 rebuild exon 5200902 5201014 . - . gene_id "RvY_01813"; transcript_id "RvY_01813.4"; Scaffold001 rebuild transcript 5203952 5205120 . - . gene_id "RvY_01814"; transcript_id "RvY_01814.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5203952 5204032 . - . gene_id "RvY_01814"; transcript_id "RvY_01814.1"; Scaffold001 rebuild exon 5204125 5204196 . - . gene_id "RvY_01814"; transcript_id "RvY_01814.1"; Scaffold001 rebuild exon 5204288 5204392 . - . gene_id "RvY_01814"; transcript_id "RvY_01814.1"; Scaffold001 rebuild exon 5204838 5204981 . - . gene_id "RvY_01814"; transcript_id "RvY_01814.1"; Scaffold001 rebuild exon 5205049 5205120 . - . gene_id "RvY_01814"; transcript_id "RvY_01814.1"; Scaffold001 rebuild transcript 5206150 5209410 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; gene_name "sss"; annotation "hypothetical protein."; Pfam "[SSF] Sodium:solute symporter family"; CDD "SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; KO "K14388"; similar_genes "SC5A6_RAT(e-value:3.2e-18;bit-score:90.0)"; Scaffold001 rebuild exon 5206150 5206212 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5206279 5206461 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5206747 5206932 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5207017 5207068 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5207221 5207288 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5207388 5207545 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5207715 5208187 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5208260 5208327 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5208389 5208475 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5208596 5208774 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5208869 5208907 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild exon 5208984 5209410 . + . gene_id "RvY_01815"; transcript_id "RvY_01815.1"; Scaffold001 rebuild transcript 5210131 5213013 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; gene_name "sss"; annotation "hypothetical protein."; Pfam "[SSF] Sodium:solute symporter family"; CDD "SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; Scaffold001 rebuild exon 5210131 5210193 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5210262 5210444 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5210547 5210732 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5210854 5210905 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5211024 5211091 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5211174 5211331 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5211395 5211708 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5211817 5211975 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5212066 5212133 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5212226 5212312 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5212367 5212539 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5212613 5212651 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild exon 5212722 5213013 . + . gene_id "RvY_01816"; transcript_id "RvY_01816.1"; Scaffold001 rebuild transcript 5213528 5214161 . - . gene_id "RvY_01817"; transcript_id "RvY_01817.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5213528 5213535 . - . gene_id "RvY_01817"; transcript_id "RvY_01817.1"; Scaffold001 rebuild exon 5213750 5214161 . - . gene_id "RvY_01817"; transcript_id "RvY_01817.1"; Scaffold001 rebuild transcript 5213556 5214056 . + . gene_id "RvY_01818"; transcript_id "RvY_01818.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5213556 5214056 . + . gene_id "RvY_01818"; transcript_id "RvY_01818.1"; Scaffold001 rebuild transcript 5214579 5215064 . - . gene_id "RvY_01819"; transcript_id "RvY_01819.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5214579 5215064 . - . gene_id "RvY_01819"; transcript_id "RvY_01819.1"; Scaffold001 rebuild transcript 5216459 5216710 . + . gene_id "RvY_01820"; transcript_id "RvY_01820.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5216459 5216710 . + . gene_id "RvY_01820"; transcript_id "RvY_01820.1"; Scaffold001 rebuild transcript 5217471 5217917 . + . gene_id "RvY_01821"; transcript_id "RvY_01821.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5217471 5217917 . + . gene_id "RvY_01821"; transcript_id "RvY_01821.1"; Scaffold001 rebuild transcript 5223051 5225928 . + . gene_id "RvY_01822"; transcript_id "RvY_01822.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5223051 5223069 . + . gene_id "RvY_01822"; transcript_id "RvY_01822.1"; Scaffold001 rebuild exon 5223222 5224313 . + . gene_id "RvY_01822"; transcript_id "RvY_01822.1"; Scaffold001 rebuild exon 5224589 5225928 . + . gene_id "RvY_01822"; transcript_id "RvY_01822.1"; Scaffold001 rebuild transcript 5226426 5230766 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; gene_name "F8"; annotation "coagulation factor VIII"; Pfam "[F5_F8_type_C] F5/8 type C domain"; CDD "Substituted updates: Jan 31, 2002"; KO "K03899"; Scaffold001 rebuild exon 5226426 5227186 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild exon 5227255 5227934 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild exon 5227994 5228384 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild exon 5228484 5229056 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild exon 5229233 5229709 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild exon 5229995 5230166 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild exon 5230248 5230766 . - . gene_id "RvY_01823"; transcript_id "RvY_01823.1"; Scaffold001 rebuild transcript 5233415 5233999 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5233415 5233458 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.1"; Scaffold001 rebuild exon 5233533 5233724 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.1"; Scaffold001 rebuild exon 5233795 5233999 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.1"; Scaffold001 rebuild transcript 5233234 5233649 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5233234 5233458 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.2"; Scaffold001 rebuild exon 5233533 5233649 . - . gene_id "RvY_01824"; transcript_id "RvY_01824.2"; Scaffold001 rebuild transcript 5236110 5241178 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; annotation "(1)putative Anoctamin-5(2)hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "(1)ANO5_MOUSE(e-value:4.6e-30;bit-score:129.0)(2)ANO5_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 5236110 5236205 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5236434 5236616 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5236726 5236833 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5236911 5237047 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5237134 5237434 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5237609 5237787 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5237855 5238044 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5238157 5238300 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5238393 5238420 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5238512 5238690 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5238990 5239138 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5239385 5239439 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5239541 5239775 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5240026 5240231 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5240316 5240509 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5240634 5240739 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild exon 5240957 5241178 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.1"; Scaffold001 rebuild transcript 5236110 5239142 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; annotation "(1)putative Anoctamin-5(2)hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "(1)ANO5_MOUSE(e-value:4.6e-30;bit-score:129.0)(2)ANO5_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 5236110 5236205 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5236434 5236616 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5236726 5236833 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5236911 5237047 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5237134 5237434 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5237609 5237787 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5237855 5238044 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5238157 5238300 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5238393 5238420 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5238512 5238690 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild exon 5238990 5239142 . + . gene_id "RvY_01825"; transcript_id "RvY_01825.2"; Scaffold001 rebuild transcript 5241909 5243408 . + . gene_id "RvY_01826"; transcript_id "RvY_01826.1"; gene_name "TFIIS"; annotation "putative Transcription elongation factor A protein 3"; Pfam "[TFIIS_C] Transcription factor S-II (TFIIS)|[Med26] TFIIS helical bundle-like domain|[TFIIS_M] Transcription factor S-II (TFIIS), central domain"; CDD "transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end."; KO "K03145"; similar_genes "TCEA3_MOUSE(e-value:4.0e-46;bit-score:182.0)"; Scaffold001 rebuild exon 5241909 5242251 . + . gene_id "RvY_01826"; transcript_id "RvY_01826.1"; Scaffold001 rebuild exon 5242744 5243408 . + . gene_id "RvY_01826"; transcript_id "RvY_01826.1"; Scaffold001 rebuild transcript 5244018 5244638 . + . gene_id "RvY_01827"; transcript_id "RvY_01827.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5244018 5244638 . + . gene_id "RvY_01827"; transcript_id "RvY_01827.1"; Scaffold001 rebuild transcript 5245586 5248031 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold001 rebuild exon 5245586 5245760 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; Scaffold001 rebuild exon 5245948 5246273 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; Scaffold001 rebuild exon 5246631 5247010 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; Scaffold001 rebuild exon 5247468 5247558 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; Scaffold001 rebuild exon 5247644 5247754 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; Scaffold001 rebuild exon 5247969 5248031 . - . gene_id "RvY_01828"; transcript_id "RvY_01828.1"; Scaffold001 rebuild transcript 5248648 5250044 . + . gene_id "RvY_01829"; transcript_id "RvY_01829.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5248648 5248708 . + . gene_id "RvY_01829"; transcript_id "RvY_01829.1"; Scaffold001 rebuild exon 5248746 5248873 . + . gene_id "RvY_01829"; transcript_id "RvY_01829.1"; Scaffold001 rebuild exon 5249745 5250044 . + . gene_id "RvY_01829"; transcript_id "RvY_01829.1"; Scaffold001 rebuild transcript 5250345 5250695 . - . gene_id "RvY_01830"; transcript_id "RvY_01830.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5250345 5250695 . - . gene_id "RvY_01830"; transcript_id "RvY_01830.1"; Scaffold001 rebuild transcript 5250223 5250695 . - . gene_id "RvY_01830"; transcript_id "RvY_01830.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5250223 5250243 . - . gene_id "RvY_01830"; transcript_id "RvY_01830.2"; Scaffold001 rebuild exon 5250447 5250695 . - . gene_id "RvY_01830"; transcript_id "RvY_01830.2"; Scaffold001 rebuild transcript 5251245 5251862 . - . gene_id "RvY_01831"; transcript_id "RvY_01831.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5251245 5251557 . - . gene_id "RvY_01831"; transcript_id "RvY_01831.1"; Scaffold001 rebuild exon 5251627 5251862 . - . gene_id "RvY_01831"; transcript_id "RvY_01831.1"; Scaffold001 rebuild transcript 5251960 5254948 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5251960 5252061 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild exon 5252182 5252301 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild exon 5252535 5252738 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild exon 5252795 5253438 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild exon 5253516 5253561 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild exon 5253635 5254132 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild exon 5254232 5254948 . - . gene_id "RvY_01832"; transcript_id "RvY_01832.1"; Scaffold001 rebuild transcript 5255415 5256355 . - . gene_id "RvY_01833"; transcript_id "RvY_01833.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5255415 5255477 . - . gene_id "RvY_01833"; transcript_id "RvY_01833.1"; Scaffold001 rebuild exon 5255551 5255727 . - . gene_id "RvY_01833"; transcript_id "RvY_01833.1"; Scaffold001 rebuild exon 5255795 5255964 . - . gene_id "RvY_01833"; transcript_id "RvY_01833.1"; Scaffold001 rebuild exon 5256033 5256161 . - . gene_id "RvY_01833"; transcript_id "RvY_01833.1"; Scaffold001 rebuild exon 5256238 5256355 . - . gene_id "RvY_01833"; transcript_id "RvY_01833.1"; Scaffold001 rebuild transcript 5257457 5261258 . + . gene_id "RvY_01834"; transcript_id "RvY_01834.1"; annotation "hypothetical protein."; Pfam "[CABIT] Cell-cycle sustaining, positive selection,"; Scaffold001 rebuild exon 5257457 5257721 . + . gene_id "RvY_01834"; transcript_id "RvY_01834.1"; Scaffold001 rebuild exon 5260180 5261258 . + . gene_id "RvY_01834"; transcript_id "RvY_01834.1"; Scaffold001 rebuild transcript 5261825 5264093 . + . gene_id "RvY_01835"; transcript_id "RvY_01835.1"; gene_name "AmpC"; annotation "hypothetical protein."; Pfam "[Beta-lactamase]"; CDD "Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]"; Scaffold001 rebuild exon 5261825 5262219 . + . gene_id "RvY_01835"; transcript_id "RvY_01835.1"; Scaffold001 rebuild exon 5262290 5262402 . + . gene_id "RvY_01835"; transcript_id "RvY_01835.1"; Scaffold001 rebuild exon 5262467 5262604 . + . gene_id "RvY_01835"; transcript_id "RvY_01835.1"; Scaffold001 rebuild exon 5262789 5263232 . + . gene_id "RvY_01835"; transcript_id "RvY_01835.1"; Scaffold001 rebuild exon 5263306 5264093 . + . gene_id "RvY_01835"; transcript_id "RvY_01835.1"; Scaffold001 rebuild transcript 5266086 5269655 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; annotation "hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "ANO1_HUMAN(e-value:1.7e-23;bit-score:107.0)"; Scaffold001 rebuild exon 5266086 5266166 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5266263 5266442 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5266511 5266723 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5266782 5267132 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5267216 5267296 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5267371 5267549 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5267615 5267804 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5267893 5268030 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5268111 5268284 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5268352 5268500 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5268560 5268614 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5268687 5268921 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild exon 5268994 5269655 . + . gene_id "RvY_01836"; transcript_id "RvY_01836.1"; Scaffold001 rebuild transcript 5269855 5271575 . + . gene_id "RvY_01837"; transcript_id "RvY_01837.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5269855 5269935 . + . gene_id "RvY_01837"; transcript_id "RvY_01837.1"; Scaffold001 rebuild exon 5271444 5271575 . + . gene_id "RvY_01837"; transcript_id "RvY_01837.1"; Scaffold001 rebuild transcript 5273567 5273905 . + . gene_id "RvY_01838"; transcript_id "RvY_01838.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 5273567 5273905 . + . gene_id "RvY_01838"; transcript_id "RvY_01838.1"; Scaffold001 rebuild transcript 5274053 5276237 . + . gene_id "RvY_01839"; transcript_id "RvY_01839.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5274053 5274490 . + . gene_id "RvY_01839"; transcript_id "RvY_01839.1"; Scaffold001 rebuild exon 5274932 5275540 . + . gene_id "RvY_01839"; transcript_id "RvY_01839.1"; Scaffold001 rebuild exon 5276154 5276237 . + . gene_id "RvY_01839"; transcript_id "RvY_01839.1"; Scaffold001 rebuild transcript 5279032 5279831 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5279032 5279048 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.1"; Scaffold001 rebuild exon 5279191 5279403 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.1"; Scaffold001 rebuild exon 5279468 5279536 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.1"; Scaffold001 rebuild exon 5279588 5279831 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.1"; Scaffold001 rebuild transcript 5279032 5279831 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5279032 5279048 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.2"; Scaffold001 rebuild exon 5279191 5279253 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.2"; Scaffold001 rebuild exon 5279323 5279403 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.2"; Scaffold001 rebuild exon 5279468 5279536 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.2"; Scaffold001 rebuild exon 5279588 5279831 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.2"; Scaffold001 rebuild transcript 5278791 5279340 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5278791 5279048 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.3"; Scaffold001 rebuild exon 5279191 5279340 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.3"; Scaffold001 rebuild transcript 5278791 5279340 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5278791 5279048 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.4"; Scaffold001 rebuild exon 5279191 5279253 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.4"; Scaffold001 rebuild exon 5279323 5279340 . - . gene_id "RvY_01840"; transcript_id "RvY_01840.4"; Scaffold001 rebuild transcript 5280630 5280833 . - . gene_id "RvY_01841"; transcript_id "RvY_01841.1"; gene_name "PTZ00211"; annotation "hypothetical protein."; Pfam "[Ribonuc_red_sm] Ribonucleotide reductase, small chain"; CDD "ribonucleotide reductase small subunit; Provisional"; Scaffold001 rebuild exon 5280630 5280833 . - . gene_id "RvY_01841"; transcript_id "RvY_01841.1"; Scaffold001 rebuild transcript 5280994 5281292 . + . gene_id "RvY_01842"; transcript_id "RvY_01842.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5280994 5281027 . + . gene_id "RvY_01842"; transcript_id "RvY_01842.1"; Scaffold001 rebuild exon 5281120 5281292 . + . gene_id "RvY_01842"; transcript_id "RvY_01842.1"; Scaffold001 rebuild transcript 5281365 5282073 . + . gene_id "RvY_01843"; transcript_id "RvY_01843.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5281365 5281640 . + . gene_id "RvY_01843"; transcript_id "RvY_01843.1"; Scaffold001 rebuild exon 5281849 5282073 . + . gene_id "RvY_01843"; transcript_id "RvY_01843.1"; Scaffold001 rebuild transcript 5283696 5283875 . + . gene_id "RvY_01844"; transcript_id "RvY_01844.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5283696 5283875 . + . gene_id "RvY_01844"; transcript_id "RvY_01844.1"; Scaffold001 rebuild transcript 5284121 5284540 . + . gene_id "RvY_01845"; transcript_id "RvY_01845.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5284121 5284540 . + . gene_id "RvY_01845"; transcript_id "RvY_01845.1"; Scaffold001 rebuild transcript 5284725 5285190 . - . gene_id "RvY_01846"; transcript_id "RvY_01846.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5284725 5284888 . - . gene_id "RvY_01846"; transcript_id "RvY_01846.1"; Scaffold001 rebuild exon 5285130 5285190 . - . gene_id "RvY_01846"; transcript_id "RvY_01846.1"; Scaffold001 rebuild transcript 5285190 5285647 . - . gene_id "RvY_01847"; transcript_id "RvY_01847.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5285190 5285432 . - . gene_id "RvY_01847"; transcript_id "RvY_01847.1"; Scaffold001 rebuild exon 5285537 5285647 . - . gene_id "RvY_01847"; transcript_id "RvY_01847.1"; Scaffold001 rebuild transcript 5287441 5287692 . + . gene_id "RvY_01848"; transcript_id "RvY_01848.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5287441 5287692 . + . gene_id "RvY_01848"; transcript_id "RvY_01848.1"; Scaffold001 rebuild transcript 5290173 5290466 . - . gene_id "RvY_01849"; transcript_id "RvY_01849.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5290173 5290466 . - . gene_id "RvY_01849"; transcript_id "RvY_01849.1"; Scaffold001 rebuild transcript 5290653 5291642 . + . gene_id "RvY_01850"; transcript_id "RvY_01850.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5290653 5291642 . + . gene_id "RvY_01850"; transcript_id "RvY_01850.1"; Scaffold001 rebuild transcript 5292358 5292684 . + . gene_id "RvY_01851"; transcript_id "RvY_01851.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold001 rebuild exon 5292358 5292684 . + . gene_id "RvY_01851"; transcript_id "RvY_01851.1"; Scaffold001 rebuild transcript 5292691 5293220 . + . gene_id "RvY_01852"; transcript_id "RvY_01852.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5292691 5292907 . + . gene_id "RvY_01852"; transcript_id "RvY_01852.1"; Scaffold001 rebuild exon 5293174 5293220 . + . gene_id "RvY_01852"; transcript_id "RvY_01852.1"; Scaffold001 rebuild transcript 5296173 5296959 . + . gene_id "RvY_01853"; transcript_id "RvY_01853.1"; annotation "hypothetical protein."; Pfam "[Myb_DNA-bind_4] Myb/SANT-like DNA-binding domain"; Scaffold001 rebuild exon 5296173 5296445 . + . gene_id "RvY_01853"; transcript_id "RvY_01853.1"; Scaffold001 rebuild exon 5296621 5296959 . + . gene_id "RvY_01853"; transcript_id "RvY_01853.1"; Scaffold001 rebuild transcript 5297533 5297724 . - . gene_id "RvY_01854"; transcript_id "RvY_01854.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5297533 5297724 . - . gene_id "RvY_01854"; transcript_id "RvY_01854.1"; Scaffold001 rebuild transcript 5297831 5298112 . - . gene_id "RvY_01855"; transcript_id "RvY_01855.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5297831 5298112 . - . gene_id "RvY_01855"; transcript_id "RvY_01855.1"; Scaffold001 rebuild transcript 5301524 5303818 . - . gene_id "RvY_01856"; transcript_id "RvY_01856.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5301524 5301564 . - . gene_id "RvY_01856"; transcript_id "RvY_01856.1"; Scaffold001 rebuild exon 5303138 5303573 . - . gene_id "RvY_01856"; transcript_id "RvY_01856.1"; Scaffold001 rebuild exon 5303687 5303818 . - . gene_id "RvY_01856"; transcript_id "RvY_01856.1"; Scaffold001 rebuild transcript 5304679 5305444 . - . gene_id "RvY_01857"; transcript_id "RvY_01857.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5304679 5305025 . - . gene_id "RvY_01857"; transcript_id "RvY_01857.1"; Scaffold001 rebuild exon 5305054 5305444 . - . gene_id "RvY_01857"; transcript_id "RvY_01857.1"; Scaffold001 rebuild transcript 5307008 5308592 . - . gene_id "RvY_01858"; transcript_id "RvY_01858.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5307008 5307664 . - . gene_id "RvY_01858"; transcript_id "RvY_01858.1"; Scaffold001 rebuild exon 5307735 5307956 . - . gene_id "RvY_01858"; transcript_id "RvY_01858.1"; Scaffold001 rebuild exon 5308092 5308592 . - . gene_id "RvY_01858"; transcript_id "RvY_01858.1"; Scaffold001 rebuild transcript 5311622 5312371 . + . gene_id "RvY_01859"; transcript_id "RvY_01859.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5311622 5311714 . + . gene_id "RvY_01859"; transcript_id "RvY_01859.1"; Scaffold001 rebuild exon 5312048 5312371 . + . gene_id "RvY_01859"; transcript_id "RvY_01859.1"; Scaffold001 rebuild transcript 5312756 5313080 . + . gene_id "RvY_01860"; transcript_id "RvY_01860.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5312756 5312888 . + . gene_id "RvY_01860"; transcript_id "RvY_01860.1"; Scaffold001 rebuild exon 5312905 5313080 . + . gene_id "RvY_01860"; transcript_id "RvY_01860.1"; Scaffold001 rebuild transcript 5313144 5315659 . + . gene_id "RvY_01861"; transcript_id "RvY_01861.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 5313144 5313451 . + . gene_id "RvY_01861"; transcript_id "RvY_01861.1"; Scaffold001 rebuild exon 5313642 5314743 . + . gene_id "RvY_01861"; transcript_id "RvY_01861.1"; Scaffold001 rebuild exon 5315141 5315404 . + . gene_id "RvY_01861"; transcript_id "RvY_01861.1"; Scaffold001 rebuild exon 5315516 5315659 . + . gene_id "RvY_01861"; transcript_id "RvY_01861.1"; Scaffold001 rebuild transcript 5317204 5317857 . + . gene_id "RvY_01862"; transcript_id "RvY_01862.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5317204 5317365 . + . gene_id "RvY_01862"; transcript_id "RvY_01862.1"; Scaffold001 rebuild exon 5317540 5317857 . + . gene_id "RvY_01862"; transcript_id "RvY_01862.1"; Scaffold001 rebuild transcript 5318828 5319807 . + . gene_id "RvY_01863"; transcript_id "RvY_01863.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5318828 5318923 . + . gene_id "RvY_01863"; transcript_id "RvY_01863.1"; Scaffold001 rebuild exon 5319238 5319807 . + . gene_id "RvY_01863"; transcript_id "RvY_01863.1"; Scaffold001 rebuild transcript 5320012 5320323 . + . gene_id "RvY_01864"; transcript_id "RvY_01864.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5320012 5320166 . + . gene_id "RvY_01864"; transcript_id "RvY_01864.1"; Scaffold001 rebuild exon 5320236 5320323 . + . gene_id "RvY_01864"; transcript_id "RvY_01864.1"; Scaffold001 rebuild transcript 5320715 5321035 . + . gene_id "RvY_01865"; transcript_id "RvY_01865.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5320715 5321035 . + . gene_id "RvY_01865"; transcript_id "RvY_01865.1"; Scaffold001 rebuild transcript 5321075 5322403 . - . gene_id "RvY_01866"; transcript_id "RvY_01866.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5321075 5322403 . - . gene_id "RvY_01866"; transcript_id "RvY_01866.1"; Scaffold001 rebuild transcript 5322406 5323652 . - . gene_id "RvY_01867"; transcript_id "RvY_01867.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5322406 5322885 . - . gene_id "RvY_01867"; transcript_id "RvY_01867.1"; Scaffold001 rebuild exon 5323284 5323652 . - . gene_id "RvY_01867"; transcript_id "RvY_01867.1"; Scaffold001 rebuild transcript 5323951 5326824 . - . gene_id "RvY_01868"; transcript_id "RvY_01868.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5323951 5324299 . - . gene_id "RvY_01868"; transcript_id "RvY_01868.1"; Scaffold001 rebuild exon 5325025 5325296 . - . gene_id "RvY_01868"; transcript_id "RvY_01868.1"; Scaffold001 rebuild exon 5325358 5325615 . - . gene_id "RvY_01868"; transcript_id "RvY_01868.1"; Scaffold001 rebuild exon 5325957 5326314 . - . gene_id "RvY_01868"; transcript_id "RvY_01868.1"; Scaffold001 rebuild exon 5326778 5326824 . - . gene_id "RvY_01868"; transcript_id "RvY_01868.1"; Scaffold001 rebuild transcript 5327931 5329405 . - . gene_id "RvY_01869"; transcript_id "RvY_01869.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5327931 5328122 . - . gene_id "RvY_01869"; transcript_id "RvY_01869.1"; Scaffold001 rebuild exon 5329154 5329405 . - . gene_id "RvY_01869"; transcript_id "RvY_01869.1"; Scaffold001 rebuild transcript 5330866 5331042 . - . gene_id "RvY_01870"; transcript_id "RvY_01870.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5330866 5331042 . - . gene_id "RvY_01870"; transcript_id "RvY_01870.1"; Scaffold001 rebuild transcript 5331066 5332279 . - . gene_id "RvY_01871"; transcript_id "RvY_01871.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5331066 5331604 . - . gene_id "RvY_01871"; transcript_id "RvY_01871.1"; Scaffold001 rebuild exon 5331640 5332279 . - . gene_id "RvY_01871"; transcript_id "RvY_01871.1"; Scaffold001 rebuild transcript 5333184 5333438 . + . gene_id "RvY_01872"; transcript_id "RvY_01872.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5333184 5333438 . + . gene_id "RvY_01872"; transcript_id "RvY_01872.1"; Scaffold001 rebuild transcript 5334432 5336177 . + . gene_id "RvY_01873"; transcript_id "RvY_01873.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5334432 5334665 . + . gene_id "RvY_01873"; transcript_id "RvY_01873.1"; Scaffold001 rebuild exon 5334731 5335016 . + . gene_id "RvY_01873"; transcript_id "RvY_01873.1"; Scaffold001 rebuild exon 5335642 5335923 . + . gene_id "RvY_01873"; transcript_id "RvY_01873.1"; Scaffold001 rebuild exon 5335993 5336177 . + . gene_id "RvY_01873"; transcript_id "RvY_01873.1"; Scaffold001 rebuild transcript 5336857 5337569 . + . gene_id "RvY_01874"; transcript_id "RvY_01874.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5336857 5336940 . + . gene_id "RvY_01874"; transcript_id "RvY_01874.1"; Scaffold001 rebuild exon 5337426 5337569 . + . gene_id "RvY_01874"; transcript_id "RvY_01874.1"; Scaffold001 rebuild transcript 5337587 5338453 . + . gene_id "RvY_01875"; transcript_id "RvY_01875.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5337587 5337702 . + . gene_id "RvY_01875"; transcript_id "RvY_01875.1"; Scaffold001 rebuild exon 5338297 5338453 . + . gene_id "RvY_01875"; transcript_id "RvY_01875.1"; Scaffold001 rebuild transcript 5340077 5341271 . + . gene_id "RvY_01876"; transcript_id "RvY_01876.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5340077 5340488 . + . gene_id "RvY_01876"; transcript_id "RvY_01876.1"; Scaffold001 rebuild exon 5340589 5340849 . + . gene_id "RvY_01876"; transcript_id "RvY_01876.1"; Scaffold001 rebuild exon 5340985 5341271 . + . gene_id "RvY_01876"; transcript_id "RvY_01876.1"; Scaffold001 rebuild transcript 5342022 5342489 . - . gene_id "RvY_01877"; transcript_id "RvY_01877.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5342022 5342489 . - . gene_id "RvY_01877"; transcript_id "RvY_01877.1"; Scaffold001 rebuild transcript 5342019 5342462 . - . gene_id "RvY_01877"; transcript_id "RvY_01877.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5342019 5342462 . - . gene_id "RvY_01877"; transcript_id "RvY_01877.2"; Scaffold001 rebuild transcript 5344262 5345457 . - . gene_id "RvY_01878"; transcript_id "RvY_01878.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5344262 5344395 . - . gene_id "RvY_01878"; transcript_id "RvY_01878.1"; Scaffold001 rebuild exon 5345433 5345457 . - . gene_id "RvY_01878"; transcript_id "RvY_01878.1"; Scaffold001 rebuild transcript 5351559 5352489 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.1"; gene_name "(2,4,5)GH31_GANC_GANAB_alpha"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "(2,4,5)This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "(1,2,3)EC3.2.1.84(4)EC3.2.1.-"; similar_genes "(1)GANAB_PIG(e-value:2.8e-19;bit-score:93.0)(2)GANAB_HUMAN(e-value:4.4e-24;bit-score:109.0)(3)GANAB_MACFA(e-value:6.6e-06;bit-score:49.0)(4)GANC_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 5351559 5351696 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.1"; Scaffold001 rebuild exon 5351776 5352004 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.1"; Scaffold001 rebuild exon 5352086 5352165 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.1"; Scaffold001 rebuild exon 5352275 5352336 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.1"; Scaffold001 rebuild exon 5352438 5352489 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.1"; Scaffold001 rebuild transcript 5351046 5351735 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.2"; gene_name "(2,4,5)GH31_GANC_GANAB_alpha"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "(2,4,5)This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "(1,2,3)EC3.2.1.84(4)EC3.2.1.-"; similar_genes "(1)GANAB_PIG(e-value:2.8e-19;bit-score:93.0)(2)GANAB_HUMAN(e-value:4.4e-24;bit-score:109.0)(3)GANAB_MACFA(e-value:6.6e-06;bit-score:49.0)(4)GANC_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 5351046 5351285 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.2"; Scaffold001 rebuild exon 5351352 5351448 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.2"; Scaffold001 rebuild exon 5351536 5351735 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.2"; Scaffold001 rebuild transcript 5351687 5352489 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.3"; gene_name "(2,4,5)GH31_GANC_GANAB_alpha"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "(2,4,5)This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "(1,2,3)EC3.2.1.84(4)EC3.2.1.-"; similar_genes "(1)GANAB_PIG(e-value:2.8e-19;bit-score:93.0)(2)GANAB_HUMAN(e-value:4.4e-24;bit-score:109.0)(3)GANAB_MACFA(e-value:6.6e-06;bit-score:49.0)(4)GANC_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 5351687 5351696 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.3"; Scaffold001 rebuild exon 5351756 5352004 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.3"; Scaffold001 rebuild exon 5352086 5352165 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.3"; Scaffold001 rebuild exon 5352275 5352336 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.3"; Scaffold001 rebuild exon 5352438 5352489 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.3"; Scaffold001 rebuild transcript 5350455 5351157 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.4"; gene_name "(2,4,5)GH31_GANC_GANAB_alpha"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "(2,4,5)This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "(1,2,3)EC3.2.1.84(4)EC3.2.1.-"; similar_genes "(1)GANAB_PIG(e-value:2.8e-19;bit-score:93.0)(2)GANAB_HUMAN(e-value:4.4e-24;bit-score:109.0)(3)GANAB_MACFA(e-value:6.6e-06;bit-score:49.0)(4)GANC_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 5350455 5350517 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.4"; Scaffold001 rebuild exon 5350801 5351157 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.4"; Scaffold001 rebuild transcript 5351046 5351465 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.5"; gene_name "(2,4,5)GH31_GANC_GANAB_alpha"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "(2,4,5)This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "(1,2,3)EC3.2.1.84(4)EC3.2.1.-"; similar_genes "(1)GANAB_PIG(e-value:2.8e-19;bit-score:93.0)(2)GANAB_HUMAN(e-value:4.4e-24;bit-score:109.0)(3)GANAB_MACFA(e-value:6.6e-06;bit-score:49.0)(4)GANC_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 5351046 5351285 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.5"; Scaffold001 rebuild exon 5351352 5351465 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.5"; Scaffold001 rebuild transcript 5350103 5350930 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.6"; gene_name "(2,4,5)GH31_GANC_GANAB_alpha"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "(2,4,5)This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "(1,2,3)EC3.2.1.84(4)EC3.2.1.-"; similar_genes "(1)GANAB_PIG(e-value:2.8e-19;bit-score:93.0)(2)GANAB_HUMAN(e-value:4.4e-24;bit-score:109.0)(3)GANAB_MACFA(e-value:6.6e-06;bit-score:49.0)(4)GANC_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold001 rebuild exon 5350103 5350126 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.6"; Scaffold001 rebuild exon 5350348 5350517 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.6"; Scaffold001 rebuild exon 5350801 5350930 . + . gene_id "RvY_01879"; transcript_id "RvY_01879.6"; Scaffold001 rebuild transcript 5352626 5352997 . + . gene_id "RvY_01880"; transcript_id "RvY_01880.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5352626 5352717 . + . gene_id "RvY_01880"; transcript_id "RvY_01880.1"; Scaffold001 rebuild exon 5352778 5352997 . + . gene_id "RvY_01880"; transcript_id "RvY_01880.1"; Scaffold001 rebuild transcript 5354045 5357291 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; gene_name "OTUD7"; annotation "OTU domain-containing protein 7 [EC:3.-.-.-]"; Pfam "[OTU] OTU-like cysteine protease"; EC "EC3.-.-.-"; KO "K11860"; similar_genes "OTU7B_HUMAN(e-value:1.1e-22;bit-score:104.0)"; Scaffold001 rebuild exon 5354045 5354495 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; Scaffold001 rebuild exon 5354803 5355029 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; Scaffold001 rebuild exon 5355100 5355224 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; Scaffold001 rebuild exon 5355330 5355554 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; Scaffold001 rebuild exon 5355727 5356409 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; Scaffold001 rebuild exon 5356714 5357291 . + . gene_id "RvY_01881"; transcript_id "RvY_01881.1"; Scaffold001 rebuild transcript 5357559 5358783 . - . gene_id "RvY_01882"; transcript_id "RvY_01882.1"; gene_name "PldB"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_2] Phospholipase/Carboxylesterase|[Peptidase_S9] Prolyl oligopeptidase family|[Abhydrolase_1] alpha/beta hydrolase fold|[Hydrolase_4] Putative lysophospholipase"; CDD "Lysophospholipase [Lipid metabolism]"; EC "EC3.1.1.23"; KO "K13704"; similar_genes "ABD12_RAT(e-value:1.6e-11;bit-score:67.0)"; Scaffold001 rebuild exon 5357559 5357840 . - . gene_id "RvY_01882"; transcript_id "RvY_01882.1"; Scaffold001 rebuild exon 5358019 5358783 . - . gene_id "RvY_01882"; transcript_id "RvY_01882.1"; Scaffold001 rebuild transcript 5359508 5360194 . - . gene_id "RvY_01883"; transcript_id "RvY_01883.1"; gene_name "UBC"; annotation "putative Ubiquitin"; Pfam "[TUG] GLUT4 regulating protein TUG|[DUF2407] DUF2407 ubiquitin-like domain|[ubiquitin] Ubiquitin family|[DUF2870]|[Rad60-SLD_2] Ubiquitin-2 like Rad60 SUMO-like|[Telomere_Sde2] Telomere stability and silencing|[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)"; KO "K08770"; similar_genes "UBIQ_CAEEL(e-value:1.4e-35;bit-score:147.0)"; Scaffold001 rebuild exon 5359508 5360194 . - . gene_id "RvY_01883"; transcript_id "RvY_01883.1"; Scaffold001 rebuild transcript 5360930 5361218 . - . gene_id "RvY_01884"; transcript_id "RvY_01884.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5360930 5360976 . - . gene_id "RvY_01884"; transcript_id "RvY_01884.1"; Scaffold001 rebuild exon 5361140 5361218 . - . gene_id "RvY_01884"; transcript_id "RvY_01884.1"; Scaffold001 rebuild transcript 5363683 5364357 . - . gene_id "RvY_01885"; transcript_id "RvY_01885.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5363683 5364357 . - . gene_id "RvY_01885"; transcript_id "RvY_01885.1"; Scaffold001 rebuild transcript 5363342 5363710 . - . gene_id "RvY_01885"; transcript_id "RvY_01885.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5363342 5363710 . - . gene_id "RvY_01885"; transcript_id "RvY_01885.2"; Scaffold001 rebuild transcript 5365771 5367716 . - . gene_id "RvY_01886"; transcript_id "RvY_01886.1"; annotation "hypothetical protein."; Pfam "[HTH_28] Helix-turn-helix domain|[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 5365771 5366328 . - . gene_id "RvY_01886"; transcript_id "RvY_01886.1"; Scaffold001 rebuild exon 5366468 5366611 . - . gene_id "RvY_01886"; transcript_id "RvY_01886.1"; Scaffold001 rebuild exon 5366835 5367340 . - . gene_id "RvY_01886"; transcript_id "RvY_01886.1"; Scaffold001 rebuild exon 5367413 5367716 . - . gene_id "RvY_01886"; transcript_id "RvY_01886.1"; Scaffold001 rebuild transcript 5369051 5373926 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; annotation "hypothetical protein."; Pfam "[RA] Ras association (RalGDS/AF-6) domain"; Scaffold001 rebuild exon 5369051 5369248 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild exon 5372303 5372387 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild exon 5372477 5372575 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild exon 5372915 5373066 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild exon 5373160 5373301 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild exon 5373428 5373711 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild exon 5373819 5373926 . + . gene_id "RvY_01887"; transcript_id "RvY_01887.1"; Scaffold001 rebuild transcript 5374501 5375509 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; annotation "hypothetical protein."; Pfam "[zf-H2C2_2] Zinc-finger double domain"; Scaffold001 rebuild exon 5374501 5374741 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; Scaffold001 rebuild exon 5374813 5374872 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; Scaffold001 rebuild exon 5374933 5375022 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; Scaffold001 rebuild exon 5375098 5375187 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; Scaffold001 rebuild exon 5375271 5375369 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; Scaffold001 rebuild exon 5375484 5375509 . + . gene_id "RvY_01888"; transcript_id "RvY_01888.1"; Scaffold001 rebuild transcript 5375805 5376507 . + . gene_id "RvY_01889"; transcript_id "RvY_01889.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5375805 5375841 . + . gene_id "RvY_01889"; transcript_id "RvY_01889.1"; Scaffold001 rebuild exon 5375918 5376022 . + . gene_id "RvY_01889"; transcript_id "RvY_01889.1"; Scaffold001 rebuild exon 5376220 5376330 . + . gene_id "RvY_01889"; transcript_id "RvY_01889.1"; Scaffold001 rebuild exon 5376443 5376507 . + . gene_id "RvY_01889"; transcript_id "RvY_01889.1"; Scaffold001 rebuild transcript 5376632 5377069 . + . gene_id "RvY_01890"; transcript_id "RvY_01890.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5376632 5376836 . + . gene_id "RvY_01890"; transcript_id "RvY_01890.1"; Scaffold001 rebuild exon 5376903 5377069 . + . gene_id "RvY_01890"; transcript_id "RvY_01890.1"; Scaffold001 rebuild transcript 5377656 5378012 . + . gene_id "RvY_01891"; transcript_id "RvY_01891.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5377656 5378012 . + . gene_id "RvY_01891"; transcript_id "RvY_01891.1"; Scaffold001 rebuild transcript 5379083 5379706 . + . gene_id "RvY_01892"; transcript_id "RvY_01892.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5379083 5379215 . + . gene_id "RvY_01892"; transcript_id "RvY_01892.1"; Scaffold001 rebuild exon 5379285 5379392 . + . gene_id "RvY_01892"; transcript_id "RvY_01892.1"; Scaffold001 rebuild exon 5379615 5379706 . + . gene_id "RvY_01892"; transcript_id "RvY_01892.1"; Scaffold001 rebuild transcript 5379952 5380547 . + . gene_id "RvY_01893"; transcript_id "RvY_01893.1"; annotation "hypothetical protein."; Pfam "[zf-H2C2_5] C2H2-type zinc-finger domain"; Scaffold001 rebuild exon 5379952 5380156 . + . gene_id "RvY_01893"; transcript_id "RvY_01893.1"; Scaffold001 rebuild exon 5380219 5380317 . + . gene_id "RvY_01893"; transcript_id "RvY_01893.1"; Scaffold001 rebuild exon 5380429 5380547 . + . gene_id "RvY_01893"; transcript_id "RvY_01893.1"; Scaffold001 rebuild transcript 5380585 5380890 . + . gene_id "RvY_01894"; transcript_id "RvY_01894.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5380585 5380890 . + . gene_id "RvY_01894"; transcript_id "RvY_01894.1"; Scaffold001 rebuild transcript 5381302 5387472 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; annotation "hypothetical protein."; Pfam "[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[ADAM_CR] ADAM cysteine-rich|[Disintegrin]"; EC "EC3.4.24.-"; similar_genes "VMMOC_NAJMO(e-value:1.0e-08;bit-score:58.0)"; Scaffold001 rebuild exon 5381302 5382143 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5382335 5382953 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5383226 5383630 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5383876 5384170 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5384235 5384377 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5384494 5384754 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5385144 5385233 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5385448 5385650 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5385798 5386105 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5386513 5387065 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild exon 5387376 5387472 . - . gene_id "RvY_01895"; transcript_id "RvY_01895.1"; Scaffold001 rebuild transcript 5390549 5390725 . + . gene_id "RvY_01896"; transcript_id "RvY_01896.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5390549 5390725 . + . gene_id "RvY_01896"; transcript_id "RvY_01896.1"; Scaffold001 rebuild transcript 5391273 5391437 . - . gene_id "RvY_01897"; transcript_id "RvY_01897.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5391273 5391437 . - . gene_id "RvY_01897"; transcript_id "RvY_01897.1"; Scaffold001 rebuild transcript 5392338 5392718 . - . gene_id "RvY_01898"; transcript_id "RvY_01898.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5392338 5392718 . - . gene_id "RvY_01898"; transcript_id "RvY_01898.1"; Scaffold001 rebuild transcript 5395180 5396453 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.1"; gene_name "GBP"; annotation "hypothetical protein."; Pfam "[GBP] Guanylate-binding protein, N-terminal domain"; CDD "Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach."; Scaffold001 rebuild exon 5395180 5395389 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.1"; Scaffold001 rebuild exon 5395458 5395637 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.1"; Scaffold001 rebuild exon 5395798 5396176 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.1"; Scaffold001 rebuild exon 5396236 5396453 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.1"; Scaffold001 rebuild transcript 5395180 5396280 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.2"; gene_name "GBP"; annotation "hypothetical protein."; Pfam "[GBP] Guanylate-binding protein, N-terminal domain"; CDD "Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach."; Scaffold001 rebuild exon 5395180 5395389 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.2"; Scaffold001 rebuild exon 5395458 5395637 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.2"; Scaffold001 rebuild exon 5395798 5396280 . + . gene_id "RvY_01899"; transcript_id "RvY_01899.2"; Scaffold001 rebuild transcript 5396486 5397599 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5396486 5396534 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; Scaffold001 rebuild exon 5396602 5396729 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; Scaffold001 rebuild exon 5396806 5396928 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; Scaffold001 rebuild exon 5396996 5397244 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; Scaffold001 rebuild exon 5397328 5397393 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; Scaffold001 rebuild exon 5397459 5397599 . + . gene_id "RvY_01900"; transcript_id "RvY_01900.1"; Scaffold001 rebuild transcript 5398214 5399434 . + . gene_id "RvY_01901"; transcript_id "RvY_01901.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 5398214 5399161 . + . gene_id "RvY_01901"; transcript_id "RvY_01901.1"; Scaffold001 rebuild exon 5399348 5399434 . + . gene_id "RvY_01901"; transcript_id "RvY_01901.1"; Scaffold001 rebuild transcript 5401297 5403133 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; annotation "hypothetical protein."; Pfam "[INCENP_ARK-bind] Inner centromere protein, ARK binding region"; Scaffold001 rebuild exon 5401297 5401547 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; Scaffold001 rebuild exon 5401627 5401897 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; Scaffold001 rebuild exon 5402036 5402320 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; Scaffold001 rebuild exon 5402474 5402788 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; Scaffold001 rebuild exon 5402864 5403052 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; Scaffold001 rebuild exon 5403131 5403133 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.1"; Scaffold001 rebuild transcript 5401496 5403133 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; annotation "hypothetical protein."; Pfam "[INCENP_ARK-bind] Inner centromere protein, ARK binding region"; Scaffold001 rebuild exon 5401496 5401547 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; Scaffold001 rebuild exon 5401740 5401897 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; Scaffold001 rebuild exon 5402036 5402320 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; Scaffold001 rebuild exon 5402474 5402788 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; Scaffold001 rebuild exon 5402864 5403052 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; Scaffold001 rebuild exon 5403131 5403133 . - . gene_id "RvY_01902"; transcript_id "RvY_01902.2"; Scaffold001 rebuild transcript 5404116 5408840 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; gene_name "KAP95"; annotation "putative Transportin-1"; Pfam "[Arm] Armadillo/beta-catenin-like repeat|[Adaptin_N] Adaptin N terminal region|[HEAT_2] HEAT repeats|[Vac14_Fab1_bd] Vacuolar 14 Fab1-binding region|[Cnd1] non-SMC mitotic condensation complex subunit 1|[HEAT_EZ] HEAT-like repeat|[IBN_N] Importin-beta N-terminal domain|[HEAT] HEAT repeat"; CDD "Karyopherin (importin) beta [Intracellular trafficking and secretion]"; similar_genes "TNPO1_BOVIN(e-value:2.7e-45;bit-score:180.0)"; Scaffold001 rebuild exon 5404116 5404223 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5404402 5404477 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5404600 5404779 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5404848 5404924 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5405044 5405271 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5405339 5405684 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5405839 5406141 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5406207 5406379 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5406695 5407114 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5407226 5407384 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5407480 5407567 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5407646 5407840 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5408023 5408098 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5408291 5408344 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5408540 5408663 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild exon 5408733 5408840 . + . gene_id "RvY_01903"; transcript_id "RvY_01903.1"; Scaffold001 rebuild transcript 5410726 5413049 . + . gene_id "RvY_01904"; transcript_id "RvY_01904.1"; gene_name "Tryp_SPc"; annotation "putative Integumentary mucin C.1"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5410726 5410878 . + . gene_id "RvY_01904"; transcript_id "RvY_01904.1"; Scaffold001 rebuild exon 5410958 5411217 . + . gene_id "RvY_01904"; transcript_id "RvY_01904.1"; Scaffold001 rebuild exon 5411483 5412245 . + . gene_id "RvY_01904"; transcript_id "RvY_01904.1"; Scaffold001 rebuild exon 5412939 5413049 . + . gene_id "RvY_01904"; transcript_id "RvY_01904.1"; Scaffold001 rebuild transcript 5413857 5414282 . + . gene_id "RvY_01905"; transcript_id "RvY_01905.1"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; Scaffold001 rebuild exon 5413857 5413869 . + . gene_id "RvY_01905"; transcript_id "RvY_01905.1"; Scaffold001 rebuild exon 5414071 5414282 . + . gene_id "RvY_01905"; transcript_id "RvY_01905.1"; Scaffold001 rebuild transcript 5415705 5416175 . + . gene_id "RvY_01906"; transcript_id "RvY_01906.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5415705 5416175 . + . gene_id "RvY_01906"; transcript_id "RvY_01906.1"; Scaffold001 rebuild transcript 5417010 5419011 . + . gene_id "RvY_01907"; transcript_id "RvY_01907.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5417010 5417115 . + . gene_id "RvY_01907"; transcript_id "RvY_01907.1"; Scaffold001 rebuild exon 5417751 5417941 . + . gene_id "RvY_01907"; transcript_id "RvY_01907.1"; Scaffold001 rebuild exon 5418573 5418753 . + . gene_id "RvY_01907"; transcript_id "RvY_01907.1"; Scaffold001 rebuild exon 5418941 5419011 . + . gene_id "RvY_01907"; transcript_id "RvY_01907.1"; Scaffold001 rebuild transcript 5419157 5422216 . + . gene_id "RvY_01908"; transcript_id "RvY_01908.1"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; Scaffold001 rebuild exon 5419157 5419460 . + . gene_id "RvY_01908"; transcript_id "RvY_01908.1"; Scaffold001 rebuild exon 5420957 5421147 . + . gene_id "RvY_01908"; transcript_id "RvY_01908.1"; Scaffold001 rebuild exon 5422136 5422216 . + . gene_id "RvY_01908"; transcript_id "RvY_01908.1"; Scaffold001 rebuild transcript 5422923 5423306 . + . gene_id "RvY_01909"; transcript_id "RvY_01909.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5422923 5423306 . + . gene_id "RvY_01909"; transcript_id "RvY_01909.1"; Scaffold001 rebuild transcript 5426355 5428261 . + . gene_id "RvY_01910"; transcript_id "RvY_01910.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family|[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 5426355 5427129 . + . gene_id "RvY_01910"; transcript_id "RvY_01910.1"; Scaffold001 rebuild exon 5427240 5427622 . + . gene_id "RvY_01910"; transcript_id "RvY_01910.1"; Scaffold001 rebuild exon 5427695 5428261 . + . gene_id "RvY_01910"; transcript_id "RvY_01910.1"; Scaffold001 rebuild transcript 5428418 5428840 . + . gene_id "RvY_01911"; transcript_id "RvY_01911.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5428418 5428840 . + . gene_id "RvY_01911"; transcript_id "RvY_01911.1"; Scaffold001 rebuild transcript 5429843 5430163 . + . gene_id "RvY_01912"; transcript_id "RvY_01912.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5429843 5430163 . + . gene_id "RvY_01912"; transcript_id "RvY_01912.1"; Scaffold001 rebuild transcript 5430530 5431550 . + . gene_id "RvY_01913"; transcript_id "RvY_01913.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5430530 5430845 . + . gene_id "RvY_01913"; transcript_id "RvY_01913.1"; Scaffold001 rebuild exon 5431414 5431550 . + . gene_id "RvY_01913"; transcript_id "RvY_01913.1"; Scaffold001 rebuild transcript 5433335 5434745 . + . gene_id "RvY_01914"; transcript_id "RvY_01914.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5433335 5433807 . + . gene_id "RvY_01914"; transcript_id "RvY_01914.1"; Scaffold001 rebuild exon 5434157 5434413 . + . gene_id "RvY_01914"; transcript_id "RvY_01914.1"; Scaffold001 rebuild exon 5434702 5434745 . + . gene_id "RvY_01914"; transcript_id "RvY_01914.1"; Scaffold001 rebuild transcript 5435840 5437471 . + . gene_id "RvY_01915"; transcript_id "RvY_01915.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5435840 5435962 . + . gene_id "RvY_01915"; transcript_id "RvY_01915.1"; Scaffold001 rebuild exon 5436617 5436885 . + . gene_id "RvY_01915"; transcript_id "RvY_01915.1"; Scaffold001 rebuild exon 5437129 5437471 . + . gene_id "RvY_01915"; transcript_id "RvY_01915.1"; Scaffold001 rebuild transcript 5439333 5439671 . + . gene_id "RvY_01916"; transcript_id "RvY_01916.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5439333 5439671 . + . gene_id "RvY_01916"; transcript_id "RvY_01916.1"; Scaffold001 rebuild transcript 5440318 5441269 . + . gene_id "RvY_01917"; transcript_id "RvY_01917.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5440318 5440449 . + . gene_id "RvY_01917"; transcript_id "RvY_01917.1"; Scaffold001 rebuild exon 5440554 5440958 . + . gene_id "RvY_01917"; transcript_id "RvY_01917.1"; Scaffold001 rebuild exon 5441252 5441269 . + . gene_id "RvY_01917"; transcript_id "RvY_01917.1"; Scaffold001 rebuild transcript 5441354 5442085 . - . gene_id "RvY_01918"; transcript_id "RvY_01918.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5441354 5442085 . - . gene_id "RvY_01918"; transcript_id "RvY_01918.1"; Scaffold001 rebuild transcript 5442790 5445373 . + . gene_id "RvY_01919"; transcript_id "RvY_01919.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5442790 5442873 . + . gene_id "RvY_01919"; transcript_id "RvY_01919.1"; Scaffold001 rebuild exon 5443209 5443486 . + . gene_id "RvY_01919"; transcript_id "RvY_01919.1"; Scaffold001 rebuild exon 5443707 5444087 . + . gene_id "RvY_01919"; transcript_id "RvY_01919.1"; Scaffold001 rebuild exon 5445118 5445373 . + . gene_id "RvY_01919"; transcript_id "RvY_01919.1"; Scaffold001 rebuild transcript 5447594 5447884 . + . gene_id "RvY_01920"; transcript_id "RvY_01920.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5447594 5447884 . + . gene_id "RvY_01920"; transcript_id "RvY_01920.1"; Scaffold001 rebuild transcript 5448396 5449031 . - . gene_id "RvY_01921"; transcript_id "RvY_01921.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5448396 5449031 . - . gene_id "RvY_01921"; transcript_id "RvY_01921.1"; Scaffold001 rebuild transcript 5450012 5450230 . + . gene_id "RvY_01922"; transcript_id "RvY_01922.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5450012 5450230 . + . gene_id "RvY_01922"; transcript_id "RvY_01922.1"; Scaffold001 rebuild transcript 5451476 5451641 . - . gene_id "RvY_01923"; transcript_id "RvY_01923.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5451476 5451576 . - . gene_id "RvY_01923"; transcript_id "RvY_01923.1"; Scaffold001 rebuild exon 5451629 5451641 . - . gene_id "RvY_01923"; transcript_id "RvY_01923.1"; Scaffold001 rebuild transcript 5452663 5452959 . + . gene_id "RvY_01924"; transcript_id "RvY_01924.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5452663 5452959 . + . gene_id "RvY_01924"; transcript_id "RvY_01924.1"; Scaffold001 rebuild transcript 5455099 5456351 . + . gene_id "RvY_01925"; transcript_id "RvY_01925.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5455099 5455395 . + . gene_id "RvY_01925"; transcript_id "RvY_01925.1"; Scaffold001 rebuild exon 5456238 5456351 . + . gene_id "RvY_01925"; transcript_id "RvY_01925.1"; Scaffold001 rebuild transcript 5455099 5455485 . + . gene_id "RvY_01925"; transcript_id "RvY_01925.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5455099 5455485 . + . gene_id "RvY_01925"; transcript_id "RvY_01925.2"; Scaffold001 rebuild transcript 5457955 5460130 . - . gene_id "RvY_01926"; transcript_id "RvY_01926.1"; gene_name "2A0111"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "Oxalate/Formate Antiporter."; Scaffold001 rebuild exon 5457955 5458406 . - . gene_id "RvY_01926"; transcript_id "RvY_01926.1"; Scaffold001 rebuild exon 5458489 5458648 . - . gene_id "RvY_01926"; transcript_id "RvY_01926.1"; Scaffold001 rebuild exon 5458941 5459563 . - . gene_id "RvY_01926"; transcript_id "RvY_01926.1"; Scaffold001 rebuild exon 5459688 5459781 . - . gene_id "RvY_01926"; transcript_id "RvY_01926.1"; Scaffold001 rebuild exon 5459957 5460130 . - . gene_id "RvY_01926"; transcript_id "RvY_01926.1"; Scaffold001 rebuild transcript 5461156 5476392 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; gene_name "CASK"; annotation "Calcium/calmodulin-dependent protein kinase"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_kin] Guanylate kinase|[SH3_2] Variant SH3 domain|[L27]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1|EC2.7.11.17"; KO "K06103"; similar_genes "CAKI_DROME(e-value:1.2e-77;bit-score:287.0)"; Scaffold001 rebuild exon 5461156 5461335 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5461402 5461766 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5461851 5461994 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5462244 5462385 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5462460 5462627 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5462745 5462830 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5463008 5463086 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5463396 5464010 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5466998 5467078 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5469439 5469681 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5470204 5470410 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5471243 5471533 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5471596 5471743 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5471982 5472090 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5472159 5472271 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild exon 5476325 5476392 . - . gene_id "RvY_01927"; transcript_id "RvY_01927.1"; Scaffold001 rebuild transcript 5476719 5477326 . + . gene_id "RvY_01928"; transcript_id "RvY_01928.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5476719 5477047 . + . gene_id "RvY_01928"; transcript_id "RvY_01928.1"; Scaffold001 rebuild exon 5477128 5477326 . + . gene_id "RvY_01928"; transcript_id "RvY_01928.1"; Scaffold001 rebuild transcript 5476719 5477108 . + . gene_id "RvY_01928"; transcript_id "RvY_01928.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5476719 5477108 . + . gene_id "RvY_01928"; transcript_id "RvY_01928.2"; Scaffold001 rebuild transcript 5477447 5478528 . + . gene_id "RvY_01929"; transcript_id "RvY_01929.1"; annotation "putative Emopamil-binding protein-like"; Pfam "[EBP] Emopamil binding protein"; similar_genes "EBPL_MOUSE(e-value:1.0e-44;bit-score:178.0)"; Scaffold001 rebuild exon 5477447 5477698 . + . gene_id "RvY_01929"; transcript_id "RvY_01929.1"; Scaffold001 rebuild exon 5477817 5477886 . + . gene_id "RvY_01929"; transcript_id "RvY_01929.1"; Scaffold001 rebuild exon 5478062 5478244 . + . gene_id "RvY_01929"; transcript_id "RvY_01929.1"; Scaffold001 rebuild exon 5478311 5478528 . + . gene_id "RvY_01929"; transcript_id "RvY_01929.1"; Scaffold001 rebuild transcript 5478993 5482206 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; Scaffold001 rebuild exon 5478993 5479223 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild exon 5479358 5479484 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild exon 5479566 5479897 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild exon 5480561 5480896 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild exon 5481448 5481596 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild exon 5481681 5481934 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild exon 5482028 5482206 . + . gene_id "RvY_01930"; transcript_id "RvY_01930.1"; Scaffold001 rebuild transcript 5482014 5482184 . - . gene_id "RvY_01931"; transcript_id "RvY_01931.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5482014 5482184 . - . gene_id "RvY_01931"; transcript_id "RvY_01931.1"; Scaffold001 rebuild transcript 5483437 5485018 . - . gene_id "RvY_01932"; transcript_id "RvY_01932.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5483437 5484076 . - . gene_id "RvY_01932"; transcript_id "RvY_01932.1"; Scaffold001 rebuild exon 5484399 5485018 . - . gene_id "RvY_01932"; transcript_id "RvY_01932.1"; Scaffold001 rebuild transcript 5486350 5486694 . - . gene_id "RvY_01933"; transcript_id "RvY_01933.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5486350 5486694 . - . gene_id "RvY_01933"; transcript_id "RvY_01933.1"; Scaffold001 rebuild transcript 5486969 5487154 . - . gene_id "RvY_01934"; transcript_id "RvY_01934.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5486969 5487154 . - . gene_id "RvY_01934"; transcript_id "RvY_01934.1"; Scaffold001 rebuild transcript 5487740 5487934 . - . gene_id "RvY_01935"; transcript_id "RvY_01935.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5487740 5487934 . - . gene_id "RvY_01935"; transcript_id "RvY_01935.1"; Scaffold001 rebuild transcript 5487935 5489530 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5487935 5488000 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; Scaffold001 rebuild exon 5488064 5488213 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; Scaffold001 rebuild exon 5488293 5488356 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; Scaffold001 rebuild exon 5488685 5488972 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; Scaffold001 rebuild exon 5489047 5489066 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; Scaffold001 rebuild exon 5489447 5489530 . - . gene_id "RvY_01936"; transcript_id "RvY_01936.1"; Scaffold001 rebuild transcript 5491339 5492204 . - . gene_id "RvY_01937"; transcript_id "RvY_01937.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5491339 5491768 . - . gene_id "RvY_01937"; transcript_id "RvY_01937.1"; Scaffold001 rebuild exon 5492065 5492204 . - . gene_id "RvY_01937"; transcript_id "RvY_01937.1"; Scaffold001 rebuild transcript 5492289 5494059 . - . gene_id "RvY_01938"; transcript_id "RvY_01938.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5492289 5492825 . - . gene_id "RvY_01938"; transcript_id "RvY_01938.1"; Scaffold001 rebuild exon 5492894 5493269 . - . gene_id "RvY_01938"; transcript_id "RvY_01938.1"; Scaffold001 rebuild exon 5493538 5493835 . - . gene_id "RvY_01938"; transcript_id "RvY_01938.1"; Scaffold001 rebuild exon 5493975 5494059 . - . gene_id "RvY_01938"; transcript_id "RvY_01938.1"; Scaffold001 rebuild transcript 5494656 5495255 . + . gene_id "RvY_01939"; transcript_id "RvY_01939.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5494656 5494796 . + . gene_id "RvY_01939"; transcript_id "RvY_01939.1"; Scaffold001 rebuild exon 5494893 5495082 . + . gene_id "RvY_01939"; transcript_id "RvY_01939.1"; Scaffold001 rebuild exon 5495167 5495255 . + . gene_id "RvY_01939"; transcript_id "RvY_01939.1"; Scaffold001 rebuild transcript 5495950 5496886 . - . gene_id "RvY_01940"; transcript_id "RvY_01940.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5495950 5496123 . - . gene_id "RvY_01940"; transcript_id "RvY_01940.1"; Scaffold001 rebuild exon 5496665 5496886 . - . gene_id "RvY_01940"; transcript_id "RvY_01940.1"; Scaffold001 rebuild transcript 5497828 5498236 . + . gene_id "RvY_01941"; transcript_id "RvY_01941.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5497828 5497941 . + . gene_id "RvY_01941"; transcript_id "RvY_01941.1"; Scaffold001 rebuild exon 5498024 5498236 . + . gene_id "RvY_01941"; transcript_id "RvY_01941.1"; Scaffold001 rebuild transcript 5498317 5502240 . + . gene_id "RvY_01942"; transcript_id "RvY_01942.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5498317 5498365 . + . gene_id "RvY_01942"; transcript_id "RvY_01942.1"; Scaffold001 rebuild exon 5498455 5499269 . + . gene_id "RvY_01942"; transcript_id "RvY_01942.1"; Scaffold001 rebuild exon 5501055 5501402 . + . gene_id "RvY_01942"; transcript_id "RvY_01942.1"; Scaffold001 rebuild exon 5501776 5502240 . + . gene_id "RvY_01942"; transcript_id "RvY_01942.1"; Scaffold001 rebuild transcript 5504029 5505664 . - . gene_id "RvY_01943"; transcript_id "RvY_01943.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5504029 5504309 . - . gene_id "RvY_01943"; transcript_id "RvY_01943.1"; Scaffold001 rebuild exon 5505106 5505664 . - . gene_id "RvY_01943"; transcript_id "RvY_01943.1"; Scaffold001 rebuild transcript 5506036 5506926 . - . gene_id "RvY_01944"; transcript_id "RvY_01944.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5506036 5506221 . - . gene_id "RvY_01944"; transcript_id "RvY_01944.1"; Scaffold001 rebuild exon 5506497 5506810 . - . gene_id "RvY_01944"; transcript_id "RvY_01944.1"; Scaffold001 rebuild exon 5506872 5506926 . - . gene_id "RvY_01944"; transcript_id "RvY_01944.1"; Scaffold001 rebuild transcript 5507592 5508206 . - . gene_id "RvY_01945"; transcript_id "RvY_01945.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5507592 5507814 . - . gene_id "RvY_01945"; transcript_id "RvY_01945.1"; Scaffold001 rebuild exon 5508142 5508206 . - . gene_id "RvY_01945"; transcript_id "RvY_01945.1"; Scaffold001 rebuild transcript 5508873 5509193 . + . gene_id "RvY_01946"; transcript_id "RvY_01946.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5508873 5509193 . + . gene_id "RvY_01946"; transcript_id "RvY_01946.1"; Scaffold001 rebuild transcript 5509957 5510718 . + . gene_id "RvY_01947"; transcript_id "RvY_01947.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5509957 5510046 . + . gene_id "RvY_01947"; transcript_id "RvY_01947.1"; Scaffold001 rebuild exon 5510207 5510521 . + . gene_id "RvY_01947"; transcript_id "RvY_01947.1"; Scaffold001 rebuild exon 5510593 5510718 . + . gene_id "RvY_01947"; transcript_id "RvY_01947.1"; Scaffold001 rebuild transcript 5510801 5511022 . + . gene_id "RvY_01948"; transcript_id "RvY_01948.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5510801 5511022 . + . gene_id "RvY_01948"; transcript_id "RvY_01948.1"; Scaffold001 rebuild transcript 5511783 5513447 . + . gene_id "RvY_01949"; transcript_id "RvY_01949.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5511783 5511796 . + . gene_id "RvY_01949"; transcript_id "RvY_01949.1"; Scaffold001 rebuild exon 5512772 5513447 . + . gene_id "RvY_01949"; transcript_id "RvY_01949.1"; Scaffold001 rebuild transcript 5513590 5514360 . + . gene_id "RvY_01950"; transcript_id "RvY_01950.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5513590 5514360 . + . gene_id "RvY_01950"; transcript_id "RvY_01950.1"; Scaffold001 rebuild transcript 5515112 5515380 . - . gene_id "RvY_01951"; transcript_id "RvY_01951.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5515112 5515164 . - . gene_id "RvY_01951"; transcript_id "RvY_01951.1"; Scaffold001 rebuild exon 5515257 5515380 . - . gene_id "RvY_01951"; transcript_id "RvY_01951.1"; Scaffold001 rebuild transcript 5515957 5517349 . - . gene_id "RvY_01952"; transcript_id "RvY_01952.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5515957 5516244 . - . gene_id "RvY_01952"; transcript_id "RvY_01952.1"; Scaffold001 rebuild exon 5517116 5517349 . - . gene_id "RvY_01952"; transcript_id "RvY_01952.1"; Scaffold001 rebuild transcript 5518043 5518411 . - . gene_id "RvY_01953"; transcript_id "RvY_01953.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5518043 5518411 . - . gene_id "RvY_01953"; transcript_id "RvY_01953.1"; Scaffold001 rebuild transcript 5518977 5519561 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5518977 5519042 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.1"; Scaffold001 rebuild exon 5519199 5519561 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.1"; Scaffold001 rebuild transcript 5519039 5519561 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5519039 5519042 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.2"; Scaffold001 rebuild exon 5519199 5519349 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.2"; Scaffold001 rebuild exon 5519432 5519561 . - . gene_id "RvY_01954"; transcript_id "RvY_01954.2"; Scaffold001 rebuild transcript 5520277 5521266 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5520277 5520502 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.1"; Scaffold001 rebuild exon 5520623 5520704 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.1"; Scaffold001 rebuild exon 5521023 5521266 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.1"; Scaffold001 rebuild transcript 5520277 5521266 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5520277 5520502 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.2"; Scaffold001 rebuild exon 5520623 5520704 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.2"; Scaffold001 rebuild exon 5521032 5521266 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.2"; Scaffold001 rebuild transcript 5520277 5520708 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5520277 5520502 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.3"; Scaffold001 rebuild exon 5520623 5520708 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.3"; Scaffold001 rebuild transcript 5520051 5520359 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5520051 5520359 . + . gene_id "RvY_01955"; transcript_id "RvY_01955.4"; Scaffold001 rebuild transcript 5521671 5522657 . - . gene_id "RvY_01956"; transcript_id "RvY_01956.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5521671 5522051 . - . gene_id "RvY_01956"; transcript_id "RvY_01956.1"; Scaffold001 rebuild exon 5522400 5522657 . - . gene_id "RvY_01956"; transcript_id "RvY_01956.1"; Scaffold001 rebuild transcript 5523184 5523702 . + . gene_id "RvY_01957"; transcript_id "RvY_01957.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5523184 5523702 . + . gene_id "RvY_01957"; transcript_id "RvY_01957.1"; Scaffold001 rebuild transcript 5523846 5524271 . + . gene_id "RvY_01958"; transcript_id "RvY_01958.1"; annotation "hypothetical protein."; Pfam "[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5523846 5524271 . + . gene_id "RvY_01958"; transcript_id "RvY_01958.1"; Scaffold001 rebuild transcript 5526518 5532530 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; annotation "hypothetical protein."; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit"; similar_genes "SLO_DROME(e-value:2.0e-24;bit-score:110.0)"; Scaffold001 rebuild exon 5526518 5526700 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5526761 5527095 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5527285 5527514 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5527598 5527635 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5527707 5527931 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5528001 5528367 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5528448 5528713 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5528776 5528940 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5529190 5529448 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5530357 5530470 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5530546 5530637 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5530733 5530921 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5531186 5531340 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5531406 5531517 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5531596 5531757 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5531846 5532230 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild exon 5532337 5532530 . - . gene_id "RvY_01959"; transcript_id "RvY_01959.1"; Scaffold001 rebuild transcript 5532304 5532540 . + . gene_id "RvY_01960"; transcript_id "RvY_01960.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5532304 5532540 . + . gene_id "RvY_01960"; transcript_id "RvY_01960.1"; Scaffold001 rebuild transcript 5533222 5534349 . - . gene_id "RvY_01961"; transcript_id "RvY_01961.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5533222 5533842 . - . gene_id "RvY_01961"; transcript_id "RvY_01961.1"; Scaffold001 rebuild exon 5533963 5534349 . - . gene_id "RvY_01961"; transcript_id "RvY_01961.1"; Scaffold001 rebuild transcript 5535427 5537316 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; annotation "hypothetical protein."; Pfam "[Fringe] Fringe-like"; Scaffold001 rebuild exon 5535427 5535765 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5535835 5535886 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5535947 5535983 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5536071 5536145 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5536212 5536356 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5536460 5536622 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5536860 5536951 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5537098 5537183 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild exon 5537256 5537316 . + . gene_id "RvY_01962"; transcript_id "RvY_01962.1"; Scaffold001 rebuild transcript 5537393 5537677 . - . gene_id "RvY_01963"; transcript_id "RvY_01963.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5537393 5537677 . - . gene_id "RvY_01963"; transcript_id "RvY_01963.1"; Scaffold001 rebuild transcript 5539224 5539436 . - . gene_id "RvY_01964"; transcript_id "RvY_01964.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5539224 5539436 . - . gene_id "RvY_01964"; transcript_id "RvY_01964.1"; Scaffold001 rebuild transcript 5540803 5541991 . + . gene_id "RvY_01965"; transcript_id "RvY_01965.1"; gene_name "PRK11855"; annotation "hypothetical protein."; CDD "dihydrolipoamide acetyltransferase; Reviewed"; Scaffold001 rebuild exon 5540803 5541182 . + . gene_id "RvY_01965"; transcript_id "RvY_01965.1"; Scaffold001 rebuild exon 5541274 5541507 . + . gene_id "RvY_01965"; transcript_id "RvY_01965.1"; Scaffold001 rebuild exon 5541598 5541991 . + . gene_id "RvY_01965"; transcript_id "RvY_01965.1"; Scaffold001 rebuild transcript 5542368 5543702 . - . gene_id "RvY_01966"; transcript_id "RvY_01966.1"; gene_name "UGT73C"; annotation "UDP-glucosyl transferase 73C [EC:2.4.1.-]"; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.-"; KO "K13496"; similar_genes "UGFGT_ARATH(e-value:8.0e-13;bit-score:72.0)"; Scaffold001 rebuild exon 5542368 5543702 . - . gene_id "RvY_01966"; transcript_id "RvY_01966.1"; Scaffold001 rebuild transcript 5544290 5548551 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; gene_name "ABCF1"; annotation "ATP-binding cassette sub-family F member 1"; Pfam "[ABC_tran_2] ABC transporter|[MobB] Molybdopterin guanine dinucleotide synthesis protein B|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[AAA_22] AAA domain|[MMR_HSR1] 50S ribosome-binding GTPase|[DUF258] Protein of unknown function, DUF258|[NACHT]|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]"; KO "K06184"; similar_genes "ABCF1_RAT(e-value:1.6e-115;bit-score:413.0)"; Scaffold001 rebuild exon 5544290 5544313 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5544393 5544503 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5544692 5544808 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5544883 5544996 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5545071 5545190 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5545271 5545783 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5545855 5545955 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5546124 5546405 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5546699 5546991 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5547057 5547362 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5547664 5548149 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild exon 5548379 5548551 . + . gene_id "RvY_01967"; transcript_id "RvY_01967.1"; Scaffold001 rebuild transcript 5548854 5550277 . - . gene_id "RvY_01968"; transcript_id "RvY_01968.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5548854 5549384 . - . gene_id "RvY_01968"; transcript_id "RvY_01968.1"; Scaffold001 rebuild exon 5549609 5550277 . - . gene_id "RvY_01968"; transcript_id "RvY_01968.1"; Scaffold001 rebuild transcript 5550881 5552182 . + . gene_id "RvY_01969"; transcript_id "RvY_01969.1"; annotation "hypothetical protein."; Pfam "[NDUF_C2] NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2)"; Scaffold001 rebuild exon 5550881 5550907 . + . gene_id "RvY_01969"; transcript_id "RvY_01969.1"; Scaffold001 rebuild exon 5550971 5552182 . + . gene_id "RvY_01969"; transcript_id "RvY_01969.1"; Scaffold001 rebuild transcript 5552951 5554617 . + . gene_id "RvY_01970"; transcript_id "RvY_01970.1"; annotation "hypothetical protein."; Pfam "[Enkurin] Calmodulin-binding"; Scaffold001 rebuild exon 5552951 5553188 . + . gene_id "RvY_01970"; transcript_id "RvY_01970.1"; Scaffold001 rebuild exon 5553270 5553430 . + . gene_id "RvY_01970"; transcript_id "RvY_01970.1"; Scaffold001 rebuild exon 5553575 5553906 . + . gene_id "RvY_01970"; transcript_id "RvY_01970.1"; Scaffold001 rebuild exon 5554099 5554223 . + . gene_id "RvY_01970"; transcript_id "RvY_01970.1"; Scaffold001 rebuild exon 5554298 5554617 . + . gene_id "RvY_01970"; transcript_id "RvY_01970.1"; Scaffold001 rebuild transcript 5555210 5556133 . + . gene_id "RvY_01971"; transcript_id "RvY_01971.1"; gene_name "STKc_CCRK"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase subfamily. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure."; EC "EC2.7.11.22"; similar_genes "CDC28_YEAST(e-value:5.8e-07;bit-score:52.0)"; Scaffold001 rebuild exon 5555210 5556133 . + . gene_id "RvY_01971"; transcript_id "RvY_01971.1"; Scaffold001 rebuild transcript 5556759 5557409 . - . gene_id "RvY_01972"; transcript_id "RvY_01972.1"; annotation "hypothetical protein."; Pfam "[TRAPP] Transport protein particle (TRAPP) component"; Scaffold001 rebuild exon 5556759 5557268 . - . gene_id "RvY_01972"; transcript_id "RvY_01972.1"; Scaffold001 rebuild exon 5557323 5557409 . - . gene_id "RvY_01972"; transcript_id "RvY_01972.1"; Scaffold001 rebuild transcript 5557964 5559480 . + . gene_id "RvY_01973"; transcript_id "RvY_01973.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5557964 5558012 . + . gene_id "RvY_01973"; transcript_id "RvY_01973.1"; Scaffold001 rebuild exon 5558094 5558128 . + . gene_id "RvY_01973"; transcript_id "RvY_01973.1"; Scaffold001 rebuild exon 5558193 5558307 . + . gene_id "RvY_01973"; transcript_id "RvY_01973.1"; Scaffold001 rebuild exon 5558374 5558478 . + . gene_id "RvY_01973"; transcript_id "RvY_01973.1"; Scaffold001 rebuild exon 5559125 5559480 . + . gene_id "RvY_01973"; transcript_id "RvY_01973.1"; Scaffold001 rebuild transcript 5560946 5561693 . + . gene_id "RvY_01974"; transcript_id "RvY_01974.1"; annotation "hypothetical protein."; Pfam "[Spot_14] Thyroid hormone-inducible hepatic protein Spot 14"; Scaffold001 rebuild exon 5560946 5561389 . + . gene_id "RvY_01974"; transcript_id "RvY_01974.1"; Scaffold001 rebuild exon 5561601 5561693 . + . gene_id "RvY_01974"; transcript_id "RvY_01974.1"; Scaffold001 rebuild transcript 5566676 5568085 . - . gene_id "RvY_01975"; transcript_id "RvY_01975.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5566676 5566917 . - . gene_id "RvY_01975"; transcript_id "RvY_01975.1"; Scaffold001 rebuild exon 5568001 5568085 . - . gene_id "RvY_01975"; transcript_id "RvY_01975.1"; Scaffold001 rebuild transcript 5568730 5569109 . - . gene_id "RvY_01976"; transcript_id "RvY_01976.1"; annotation "hypothetical protein."; Pfam "[p25-alpha]"; similar_genes "TPPP2_BOVIN(e-value:1.4e-14;bit-score:78.0)"; Scaffold001 rebuild exon 5568730 5568867 . - . gene_id "RvY_01976"; transcript_id "RvY_01976.1"; Scaffold001 rebuild exon 5568975 5569109 . - . gene_id "RvY_01976"; transcript_id "RvY_01976.1"; Scaffold001 rebuild transcript 5569240 5569455 . - . gene_id "RvY_01977"; transcript_id "RvY_01977.1"; annotation "hypothetical protein."; Pfam "[p25-alpha]"; Scaffold001 rebuild exon 5569240 5569455 . - . gene_id "RvY_01977"; transcript_id "RvY_01977.1"; Scaffold001 rebuild transcript 5572346 5572695 . - . gene_id "RvY_01978"; transcript_id "RvY_01978.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5572346 5572441 . - . gene_id "RvY_01978"; transcript_id "RvY_01978.1"; Scaffold001 rebuild exon 5572591 5572695 . - . gene_id "RvY_01978"; transcript_id "RvY_01978.1"; Scaffold001 rebuild transcript 5573137 5574413 . - . gene_id "RvY_01979"; transcript_id "RvY_01979.1"; gene_name "EFh"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 Scaffold001 rebuild exon 5573137 5573228 . - . gene_id "RvY_01979"; transcript_id "RvY_01979.1"; Scaffold001 rebuild exon 5573308 5573663 . - . gene_id "RvY_01979"; transcript_id "RvY_01979.1"; Scaffold001 rebuild exon 5573862 5574327 . - . gene_id "RvY_01979"; transcript_id "RvY_01979.1"; Scaffold001 rebuild exon 5574404 5574413 . - . gene_id "RvY_01979"; transcript_id "RvY_01979.1"; Scaffold001 rebuild transcript 5575172 5576239 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.1"; gene_name "(1)TIGR00049"; annotation "(1)putative Iron-sulfur cluster assembly 2 homolog, mitochondrial(2,3)hypothetical protein."; Pfam "[Fe-S_biosyn] Iron-sulphur cluster biosynthesis"; CDD "(1)Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry."; similar_genes "(1)ISCA2_BOVIN(e-value:4.6e-28;bit-score:122.0)"; Scaffold001 rebuild exon 5575172 5575346 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.1"; Scaffold001 rebuild exon 5575482 5575609 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.1"; Scaffold001 rebuild exon 5575874 5576051 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.1"; Scaffold001 rebuild exon 5576121 5576239 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.1"; Scaffold001 rebuild transcript 5575272 5576239 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.2"; gene_name "(1)TIGR00049"; annotation "(1)putative Iron-sulfur cluster assembly 2 homolog, mitochondrial(2,3)hypothetical protein."; Pfam "[Fe-S_biosyn] Iron-sulphur cluster biosynthesis"; CDD "(1)Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry."; similar_genes "(1)ISCA2_BOVIN(e-value:4.6e-28;bit-score:122.0)"; Scaffold001 rebuild exon 5575272 5575346 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.2"; Scaffold001 rebuild exon 5575874 5576051 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.2"; Scaffold001 rebuild exon 5576121 5576239 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.2"; Scaffold001 rebuild transcript 5575844 5576239 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.3"; gene_name "(1)TIGR00049"; annotation "(1)putative Iron-sulfur cluster assembly 2 homolog, mitochondrial(2,3)hypothetical protein."; Pfam "[Fe-S_biosyn] Iron-sulphur cluster biosynthesis"; CDD "(1)Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry."; similar_genes "(1)ISCA2_BOVIN(e-value:4.6e-28;bit-score:122.0)"; Scaffold001 rebuild exon 5575844 5576051 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.3"; Scaffold001 rebuild exon 5576121 5576239 . - . gene_id "RvY_01980"; transcript_id "RvY_01980.3"; Scaffold001 rebuild transcript 5577147 5578300 . + . gene_id "RvY_01981"; transcript_id "RvY_01981.1"; gene_name "K01764"; annotation "cytochrome c heme-lyase [EC:4.4.1.17]"; Pfam "[Cyto_heme_lyase] Cytochrome c/c1 heme lyase"; EC "EC4.4.1.17"; KO "K01764"; similar_genes "CCHL_BOVIN(e-value:3.0e-25;bit-score:113.0)"; Scaffold001 rebuild exon 5577147 5577682 . + . gene_id "RvY_01981"; transcript_id "RvY_01981.1"; Scaffold001 rebuild exon 5577955 5578300 . + . gene_id "RvY_01981"; transcript_id "RvY_01981.1"; Scaffold001 rebuild transcript 5579291 5579902 . - . gene_id "RvY_01982"; transcript_id "RvY_01982.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5579291 5579902 . - . gene_id "RvY_01982"; transcript_id "RvY_01982.1"; Scaffold001 rebuild transcript 5581479 5582045 . + . gene_id "RvY_01983"; transcript_id "RvY_01983.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5581479 5581866 . + . gene_id "RvY_01983"; transcript_id "RvY_01983.1"; Scaffold001 rebuild exon 5581957 5582045 . + . gene_id "RvY_01983"; transcript_id "RvY_01983.1"; Scaffold001 rebuild transcript 5582763 5586813 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; gene_name "MMP16"; annotation "matrix metalloproteinase-16 (membrane-inserted) [EC:3.4.24.-]"; Pfam "[Hemopexin]|[PG_binding_1] Putative peptidoglycan binding domain|[Peptidase_M10] Matrixin"; EC "EC3.4.24.-"; KO "K07996"; similar_genes "MMP19_HUMAN(e-value:2.5e-18;bit-score:90.0)"; Scaffold001 rebuild exon 5582763 5582891 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5582978 5583107 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5583625 5583789 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5583851 5584084 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5584155 5584205 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5584945 5584981 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5585066 5585571 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5585644 5585780 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5585845 5585986 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild exon 5586452 5586813 . + . gene_id "RvY_01984"; transcript_id "RvY_01984.1"; Scaffold001 rebuild transcript 5586535 5586783 . - . gene_id "RvY_01985"; transcript_id "RvY_01985.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5586535 5586783 . - . gene_id "RvY_01985"; transcript_id "RvY_01985.1"; Scaffold001 rebuild transcript 5589585 5589869 . + . gene_id "RvY_01986"; transcript_id "RvY_01986.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5589585 5589869 . + . gene_id "RvY_01986"; transcript_id "RvY_01986.1"; Scaffold001 rebuild transcript 5590393 5590875 . - . gene_id "RvY_01987"; transcript_id "RvY_01987.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5590393 5590875 . - . gene_id "RvY_01987"; transcript_id "RvY_01987.1"; Scaffold001 rebuild transcript 5591459 5592885 . - . gene_id "RvY_01988"; transcript_id "RvY_01988.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5591459 5591887 . - . gene_id "RvY_01988"; transcript_id "RvY_01988.1"; Scaffold001 rebuild exon 5592080 5592257 . - . gene_id "RvY_01988"; transcript_id "RvY_01988.1"; Scaffold001 rebuild exon 5592626 5592885 . - . gene_id "RvY_01988"; transcript_id "RvY_01988.1"; Scaffold001 rebuild transcript 5593187 5593729 . - . gene_id "RvY_01989"; transcript_id "RvY_01989.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5593187 5593418 . - . gene_id "RvY_01989"; transcript_id "RvY_01989.1"; Scaffold001 rebuild exon 5593470 5593729 . - . gene_id "RvY_01989"; transcript_id "RvY_01989.1"; Scaffold001 rebuild transcript 5594084 5594764 . - . gene_id "RvY_01990"; transcript_id "RvY_01990.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5594084 5594764 . - . gene_id "RvY_01990"; transcript_id "RvY_01990.1"; Scaffold001 rebuild transcript 5595256 5596144 . - . gene_id "RvY_01991"; transcript_id "RvY_01991.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5595256 5595681 . - . gene_id "RvY_01991"; transcript_id "RvY_01991.1"; Scaffold001 rebuild exon 5595776 5596144 . - . gene_id "RvY_01991"; transcript_id "RvY_01991.1"; Scaffold001 rebuild transcript 5596338 5598266 . - . gene_id "RvY_01992"; transcript_id "RvY_01992.1"; gene_name "RT_LTR"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold001 rebuild exon 5596338 5596775 . - . gene_id "RvY_01992"; transcript_id "RvY_01992.1"; Scaffold001 rebuild exon 5597295 5598266 . - . gene_id "RvY_01992"; transcript_id "RvY_01992.1"; Scaffold001 rebuild transcript 5598552 5599088 . - . gene_id "RvY_01993"; transcript_id "RvY_01993.1"; gene_name "retropepsin_like"; annotation "hypothetical protein."; CDD "Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The Scaffold001 rebuild exon 5598552 5599088 . - . gene_id "RvY_01993"; transcript_id "RvY_01993.1"; Scaffold001 rebuild transcript 5599362 5601254 . - . gene_id "RvY_01994"; transcript_id "RvY_01994.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5599362 5599949 . - . gene_id "RvY_01994"; transcript_id "RvY_01994.1"; Scaffold001 rebuild exon 5599984 5600547 . - . gene_id "RvY_01994"; transcript_id "RvY_01994.1"; Scaffold001 rebuild exon 5601225 5601254 . - . gene_id "RvY_01994"; transcript_id "RvY_01994.1"; Scaffold001 rebuild transcript 5603738 5604839 . - . gene_id "RvY_01995"; transcript_id "RvY_01995.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5603738 5604003 . - . gene_id "RvY_01995"; transcript_id "RvY_01995.1"; Scaffold001 rebuild exon 5604093 5604138 . - . gene_id "RvY_01995"; transcript_id "RvY_01995.1"; Scaffold001 rebuild exon 5604357 5604484 . - . gene_id "RvY_01995"; transcript_id "RvY_01995.1"; Scaffold001 rebuild exon 5604833 5604839 . - . gene_id "RvY_01995"; transcript_id "RvY_01995.1"; Scaffold001 rebuild transcript 5605641 5606094 . + . gene_id "RvY_01996"; transcript_id "RvY_01996.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5605641 5605767 . + . gene_id "RvY_01996"; transcript_id "RvY_01996.1"; Scaffold001 rebuild exon 5605865 5606094 . + . gene_id "RvY_01996"; transcript_id "RvY_01996.1"; Scaffold001 rebuild transcript 5607329 5607626 . + . gene_id "RvY_01997"; transcript_id "RvY_01997.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5607329 5607428 . + . gene_id "RvY_01997"; transcript_id "RvY_01997.1"; Scaffold001 rebuild exon 5607523 5607626 . + . gene_id "RvY_01997"; transcript_id "RvY_01997.1"; Scaffold001 rebuild transcript 5607626 5607910 . - . gene_id "RvY_01998"; transcript_id "RvY_01998.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5607626 5607910 . - . gene_id "RvY_01998"; transcript_id "RvY_01998.1"; Scaffold001 rebuild transcript 5611192 5611855 . - . gene_id "RvY_01999"; transcript_id "RvY_01999.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5611192 5611348 . - . gene_id "RvY_01999"; transcript_id "RvY_01999.1"; Scaffold001 rebuild exon 5611506 5611855 . - . gene_id "RvY_01999"; transcript_id "RvY_01999.1"; Scaffold001 rebuild transcript 5612466 5613783 . + . gene_id "RvY_02000"; transcript_id "RvY_02000.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5612466 5613005 . + . gene_id "RvY_02000"; transcript_id "RvY_02000.1"; Scaffold001 rebuild exon 5613181 5613783 . + . gene_id "RvY_02000"; transcript_id "RvY_02000.1"; Scaffold001 rebuild transcript 5614355 5615003 . - . gene_id "RvY_02001"; transcript_id "RvY_02001.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5614355 5614539 . - . gene_id "RvY_02001"; transcript_id "RvY_02001.1"; Scaffold001 rebuild exon 5614664 5615003 . - . gene_id "RvY_02001"; transcript_id "RvY_02001.1"; Scaffold001 rebuild transcript 5615217 5615480 . + . gene_id "RvY_02002"; transcript_id "RvY_02002.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5615217 5615480 . + . gene_id "RvY_02002"; transcript_id "RvY_02002.1"; Scaffold001 rebuild transcript 5615617 5616009 . - . gene_id "RvY_02003"; transcript_id "RvY_02003.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5615617 5616009 . - . gene_id "RvY_02003"; transcript_id "RvY_02003.1"; Scaffold001 rebuild transcript 5616351 5616653 . - . gene_id "RvY_02004"; transcript_id "RvY_02004.1"; annotation "hypothetical protein."; Pfam "[rve] Integrase core domain"; Scaffold001 rebuild exon 5616351 5616653 . - . gene_id "RvY_02004"; transcript_id "RvY_02004.1"; Scaffold001 rebuild transcript 5617234 5618089 . - . gene_id "RvY_02005"; transcript_id "RvY_02005.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5617234 5617716 . - . gene_id "RvY_02005"; transcript_id "RvY_02005.1"; Scaffold001 rebuild exon 5617781 5618089 . - . gene_id "RvY_02005"; transcript_id "RvY_02005.1"; Scaffold001 rebuild transcript 5618755 5619261 . - . gene_id "RvY_02006"; transcript_id "RvY_02006.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5618755 5619261 . - . gene_id "RvY_02006"; transcript_id "RvY_02006.1"; Scaffold001 rebuild transcript 5619695 5619904 . + . gene_id "RvY_02007"; transcript_id "RvY_02007.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5619695 5619904 . + . gene_id "RvY_02007"; transcript_id "RvY_02007.1"; Scaffold001 rebuild transcript 5620113 5621925 . + . gene_id "RvY_02008"; transcript_id "RvY_02008.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5620113 5620207 . + . gene_id "RvY_02008"; transcript_id "RvY_02008.1"; Scaffold001 rebuild exon 5620423 5620816 . + . gene_id "RvY_02008"; transcript_id "RvY_02008.1"; Scaffold001 rebuild exon 5621641 5621925 . + . gene_id "RvY_02008"; transcript_id "RvY_02008.1"; Scaffold001 rebuild transcript 5623091 5626020 . - . gene_id "RvY_02009"; transcript_id "RvY_02009.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5623091 5623267 . - . gene_id "RvY_02009"; transcript_id "RvY_02009.1"; Scaffold001 rebuild exon 5624161 5624409 . - . gene_id "RvY_02009"; transcript_id "RvY_02009.1"; Scaffold001 rebuild exon 5624433 5624549 . - . gene_id "RvY_02009"; transcript_id "RvY_02009.1"; Scaffold001 rebuild exon 5625847 5626020 . - . gene_id "RvY_02009"; transcript_id "RvY_02009.1"; Scaffold001 rebuild transcript 5627318 5629125 . - . gene_id "RvY_02010"; transcript_id "RvY_02010.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5627318 5627484 . - . gene_id "RvY_02010"; transcript_id "RvY_02010.1"; Scaffold001 rebuild exon 5629035 5629125 . - . gene_id "RvY_02010"; transcript_id "RvY_02010.1"; Scaffold001 rebuild transcript 5630066 5631865 . - . gene_id "RvY_02011"; transcript_id "RvY_02011.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5630066 5630832 . - . gene_id "RvY_02011"; transcript_id "RvY_02011.1"; Scaffold001 rebuild exon 5631775 5631865 . - . gene_id "RvY_02011"; transcript_id "RvY_02011.1"; Scaffold001 rebuild transcript 5632316 5633752 . + . gene_id "RvY_02012"; transcript_id "RvY_02012.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold001 rebuild exon 5632316 5632430 . + . gene_id "RvY_02012"; transcript_id "RvY_02012.1"; Scaffold001 rebuild exon 5632547 5632797 . + . gene_id "RvY_02012"; transcript_id "RvY_02012.1"; Scaffold001 rebuild exon 5632884 5633145 . + . gene_id "RvY_02012"; transcript_id "RvY_02012.1"; Scaffold001 rebuild exon 5633169 5633752 . + . gene_id "RvY_02012"; transcript_id "RvY_02012.1"; Scaffold001 rebuild transcript 5635610 5635843 . + . gene_id "RvY_02013"; transcript_id "RvY_02013.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5635610 5635843 . + . gene_id "RvY_02013"; transcript_id "RvY_02013.1"; Scaffold001 rebuild transcript 5636208 5641206 . - . gene_id "RvY_02014"; transcript_id "RvY_02014.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5636208 5636255 . - . gene_id "RvY_02014"; transcript_id "RvY_02014.1"; Scaffold001 rebuild exon 5636704 5637588 . - . gene_id "RvY_02014"; transcript_id "RvY_02014.1"; Scaffold001 rebuild exon 5637662 5639191 . - . gene_id "RvY_02014"; transcript_id "RvY_02014.1"; Scaffold001 rebuild exon 5639278 5639435 . - . gene_id "RvY_02014"; transcript_id "RvY_02014.1"; Scaffold001 rebuild exon 5641089 5641206 . - . gene_id "RvY_02014"; transcript_id "RvY_02014.1"; Scaffold001 rebuild transcript 5641782 5642113 . + . gene_id "RvY_02015"; transcript_id "RvY_02015.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5641782 5641833 . + . gene_id "RvY_02015"; transcript_id "RvY_02015.1"; Scaffold001 rebuild exon 5641905 5642113 . + . gene_id "RvY_02015"; transcript_id "RvY_02015.1"; Scaffold001 rebuild transcript 5643507 5644034 . - . gene_id "RvY_02016"; transcript_id "RvY_02016.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5643507 5643680 . - . gene_id "RvY_02016"; transcript_id "RvY_02016.1"; Scaffold001 rebuild exon 5643762 5644034 . - . gene_id "RvY_02016"; transcript_id "RvY_02016.1"; Scaffold001 rebuild transcript 5645151 5649336 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; gene_name "RASA3"; annotation "Ras GTPase-activating protein 3"; Pfam "[PH]|[RasGAP] GTPase-activator protein for Ras-like GTPase|[C2]"; CDD "The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein."; KO "K12380"; similar_genes "RASA2_MOUSE(e-value:5.1e-08;bit-score:56.0)"; Scaffold001 rebuild exon 5645151 5645428 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5645683 5646167 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5646240 5646382 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5646589 5647096 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5647318 5647950 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5648130 5648399 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5648755 5648875 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild exon 5649279 5649336 . - . gene_id "RvY_02017"; transcript_id "RvY_02017.1"; Scaffold001 rebuild transcript 5651207 5652988 . - . gene_id "RvY_02018"; transcript_id "RvY_02018.1"; annotation "hypothetical protein."; Pfam "[PBD] P21-Rho-binding domain|[WH1]"; Scaffold001 rebuild exon 5651207 5651253 . - . gene_id "RvY_02018"; transcript_id "RvY_02018.1"; Scaffold001 rebuild exon 5651323 5651443 . - . gene_id "RvY_02018"; transcript_id "RvY_02018.1"; Scaffold001 rebuild exon 5651503 5652097 . - . gene_id "RvY_02018"; transcript_id "RvY_02018.1"; Scaffold001 rebuild exon 5652174 5652775 . - . gene_id "RvY_02018"; transcript_id "RvY_02018.1"; Scaffold001 rebuild exon 5652893 5652988 . - . gene_id "RvY_02018"; transcript_id "RvY_02018.1"; Scaffold001 rebuild transcript 5653714 5654321 . - . gene_id "RvY_02019"; transcript_id "RvY_02019.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5653714 5653895 . - . gene_id "RvY_02019"; transcript_id "RvY_02019.1"; Scaffold001 rebuild exon 5654270 5654321 . - . gene_id "RvY_02019"; transcript_id "RvY_02019.1"; Scaffold001 rebuild transcript 5655209 5655523 . + . gene_id "RvY_02020"; transcript_id "RvY_02020.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5655209 5655523 . + . gene_id "RvY_02020"; transcript_id "RvY_02020.1"; Scaffold001 rebuild transcript 5655069 5655369 . + . gene_id "RvY_02020"; transcript_id "RvY_02020.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5655069 5655133 . + . gene_id "RvY_02020"; transcript_id "RvY_02020.2"; Scaffold001 rebuild exon 5655183 5655369 . + . gene_id "RvY_02020"; transcript_id "RvY_02020.2"; Scaffold001 rebuild transcript 5655452 5657999 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; gene_name "trm1"; annotation "tRNA (guanine-N2-)-methyltransferase [EC:2.1.1.32]"; Pfam "[TRM] N2,N2-dimethylguanosine tRNA methyltransferase"; EC "EC2.1.1.32"; KO "K00555"; similar_genes "TRM1_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold001 rebuild exon 5655452 5655533 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5655593 5655786 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5655883 5655991 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5656121 5656206 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5656284 5656485 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5656552 5656623 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5656691 5656839 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5656897 5657009 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5657073 5657188 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5657334 5657636 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild exon 5657734 5657999 . - . gene_id "RvY_02021"; transcript_id "RvY_02021.1"; Scaffold001 rebuild transcript 5658206 5658406 . + . gene_id "RvY_02022"; transcript_id "RvY_02022.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5658206 5658406 . + . gene_id "RvY_02022"; transcript_id "RvY_02022.1"; Scaffold001 rebuild transcript 5659305 5665844 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; gene_name "PRK12999"; annotation "Pyruvate carboxylase 1"; Pfam "[Dala_Dala_lig_C] D-ala D-ala ligase C-terminus|[Biotin_carb_C] Biotin carboxylase C-terminal domain|[ATP-grasp]|[PYC_OADA] Conserved carboxylase domain|[ATP-grasp_4] ATP-grasp domain|[CPSase_L_chain] Carbamoyl-phosphate synthase L chain, N-terminal domain|[Biotin_lipoyl_2] Biotin-lipoyl like|[HMGL-like]|[CPSase_L_D2] Carbamoyl-phosphate synthase L chain, ATP binding domain|[Biotin_lipoyl] Biotin-requiring enzyme"; CDD "pyruvate carboxylase; Reviewed"; EC "EC6.4.1.1"; KO "K01958"; similar_genes "PYC1_CAEEL(e-value:9.7e-160;bit-score:560.0)"; Scaffold001 rebuild exon 5659305 5659546 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5659716 5660163 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5660414 5660723 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5660790 5661025 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5661109 5661289 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5661553 5661920 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5662872 5663128 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5663428 5663669 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5663758 5663868 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5664039 5664334 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5664485 5664772 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5664950 5665180 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild exon 5665449 5665844 . + . gene_id "RvY_02023"; transcript_id "RvY_02023.1"; Scaffold001 rebuild transcript 5666290 5667210 . - . gene_id "RvY_02024"; transcript_id "RvY_02024.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5666290 5667210 . - . gene_id "RvY_02024"; transcript_id "RvY_02024.1"; Scaffold001 rebuild transcript 5666076 5666561 . - . gene_id "RvY_02024"; transcript_id "RvY_02024.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5666076 5666561 . - . gene_id "RvY_02024"; transcript_id "RvY_02024.2"; Scaffold001 rebuild transcript 5668049 5668545 . - . gene_id "RvY_02025"; transcript_id "RvY_02025.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5668049 5668365 . - . gene_id "RvY_02025"; transcript_id "RvY_02025.1"; Scaffold001 rebuild exon 5668428 5668545 . - . gene_id "RvY_02025"; transcript_id "RvY_02025.1"; Scaffold001 rebuild transcript 5669735 5671885 . + . gene_id "RvY_02026"; transcript_id "RvY_02026.1"; gene_name "PA_C_RZF_like"; annotation "putative RING finger protein 13"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[PA]"; CDD "PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase Scaffold001 rebuild exon 5669735 5669809 . + . gene_id "RvY_02026"; transcript_id "RvY_02026.1"; Scaffold001 rebuild exon 5670226 5670435 . + . gene_id "RvY_02026"; transcript_id "RvY_02026.1"; Scaffold001 rebuild exon 5670712 5671002 . + . gene_id "RvY_02026"; transcript_id "RvY_02026.1"; Scaffold001 rebuild exon 5671123 5671297 . + . gene_id "RvY_02026"; transcript_id "RvY_02026.1"; Scaffold001 rebuild exon 5671386 5671885 . + . gene_id "RvY_02026"; transcript_id "RvY_02026.1"; Scaffold001 rebuild transcript 5672904 5674801 . + . gene_id "RvY_02027"; transcript_id "RvY_02027.1"; gene_name "PA_C_RZF_like"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[PA]|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-Apc11] Anaphase-promoting complex subunit 11 RING-H2 finger"; CDD "PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase Scaffold001 rebuild exon 5672904 5673020 . + . gene_id "RvY_02027"; transcript_id "RvY_02027.1"; Scaffold001 rebuild exon 5673121 5673339 . + . gene_id "RvY_02027"; transcript_id "RvY_02027.1"; Scaffold001 rebuild exon 5673835 5674152 . + . gene_id "RvY_02027"; transcript_id "RvY_02027.1"; Scaffold001 rebuild exon 5674232 5674463 . + . gene_id "RvY_02027"; transcript_id "RvY_02027.1"; Scaffold001 rebuild exon 5674542 5674801 . + . gene_id "RvY_02027"; transcript_id "RvY_02027.1"; Scaffold001 rebuild transcript 5676078 5678590 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; similar_genes "NLGN2_MOUSE(e-value:1.9e-16;bit-score:84.0)"; Scaffold001 rebuild exon 5676078 5676507 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5676614 5676703 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5676798 5676983 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5677046 5677251 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5677328 5677490 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5677733 5677932 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5678036 5678156 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5678242 5678368 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild exon 5678449 5678590 . + . gene_id "RvY_02028"; transcript_id "RvY_02028.1"; Scaffold001 rebuild transcript 5681977 5686573 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 5681977 5682115 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5682315 5682721 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5682842 5683033 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5683098 5683184 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5683383 5683421 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5683493 5683536 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5683621 5683931 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5684031 5684055 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5684141 5684179 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild exon 5686306 5686573 . - . gene_id "RvY_02029"; transcript_id "RvY_02029.1"; Scaffold001 rebuild transcript 5687948 5690502 . - . gene_id "RvY_02030"; transcript_id "RvY_02030.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 5687948 5688723 . - . gene_id "RvY_02030"; transcript_id "RvY_02030.1"; Scaffold001 rebuild exon 5689127 5689340 . - . gene_id "RvY_02030"; transcript_id "RvY_02030.1"; Scaffold001 rebuild exon 5689453 5689964 . - . gene_id "RvY_02030"; transcript_id "RvY_02030.1"; Scaffold001 rebuild exon 5690103 5690502 . - . gene_id "RvY_02030"; transcript_id "RvY_02030.1"; Scaffold001 rebuild transcript 5692218 5693445 . + . gene_id "RvY_02031"; transcript_id "RvY_02031.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5692218 5692356 . + . gene_id "RvY_02031"; transcript_id "RvY_02031.1"; Scaffold001 rebuild exon 5692396 5692884 . + . gene_id "RvY_02031"; transcript_id "RvY_02031.1"; Scaffold001 rebuild exon 5693339 5693445 . + . gene_id "RvY_02031"; transcript_id "RvY_02031.1"; Scaffold001 rebuild transcript 5697990 5699018 . + . gene_id "RvY_02032"; transcript_id "RvY_02032.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5697990 5699018 . + . gene_id "RvY_02032"; transcript_id "RvY_02032.1"; Scaffold001 rebuild transcript 5702714 5702911 . - . gene_id "RvY_02033"; transcript_id "RvY_02033.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5702714 5702911 . - . gene_id "RvY_02033"; transcript_id "RvY_02033.1"; Scaffold001 rebuild transcript 5702990 5703674 . - . gene_id "RvY_02034"; transcript_id "RvY_02034.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5702990 5703195 . - . gene_id "RvY_02034"; transcript_id "RvY_02034.1"; Scaffold001 rebuild exon 5703551 5703674 . - . gene_id "RvY_02034"; transcript_id "RvY_02034.1"; Scaffold001 rebuild transcript 5704798 5705016 . - . gene_id "RvY_02035"; transcript_id "RvY_02035.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5704798 5705016 . - . gene_id "RvY_02035"; transcript_id "RvY_02035.1"; Scaffold001 rebuild transcript 5709121 5709588 . + . gene_id "RvY_02036"; transcript_id "RvY_02036.1"; gene_name "PRK13558"; annotation "hypothetical protein."; Pfam "[PAS_9] PAS domain"; CDD "bacterio-opsin activator; Provisional"; Scaffold001 rebuild exon 5709121 5709588 . + . gene_id "RvY_02036"; transcript_id "RvY_02036.1"; Scaffold001 rebuild transcript 5710542 5712393 . - . gene_id "RvY_02037"; transcript_id "RvY_02037.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 5710542 5710567 . - . gene_id "RvY_02037"; transcript_id "RvY_02037.1"; Scaffold001 rebuild exon 5710637 5711269 . - . gene_id "RvY_02037"; transcript_id "RvY_02037.1"; Scaffold001 rebuild exon 5711874 5712393 . - . gene_id "RvY_02037"; transcript_id "RvY_02037.1"; Scaffold001 rebuild transcript 5712991 5713836 . + . gene_id "RvY_02038"; transcript_id "RvY_02038.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5712991 5713580 . + . gene_id "RvY_02038"; transcript_id "RvY_02038.1"; Scaffold001 rebuild exon 5713692 5713836 . + . gene_id "RvY_02038"; transcript_id "RvY_02038.1"; Scaffold001 rebuild transcript 5714058 5714510 . + . gene_id "RvY_02039"; transcript_id "RvY_02039.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5714058 5714510 . + . gene_id "RvY_02039"; transcript_id "RvY_02039.1"; Scaffold001 rebuild transcript 5715746 5717427 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GUC2D_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold001 rebuild exon 5715746 5716005 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild exon 5716121 5716251 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild exon 5716339 5716501 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild exon 5716573 5716792 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild exon 5716860 5717013 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild exon 5717094 5717186 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild exon 5717270 5717427 . + . gene_id "RvY_02040"; transcript_id "RvY_02040.1"; Scaffold001 rebuild transcript 5720087 5720374 . + . gene_id "RvY_02041"; transcript_id "RvY_02041.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5720087 5720191 . + . gene_id "RvY_02041"; transcript_id "RvY_02041.1"; Scaffold001 rebuild exon 5720270 5720374 . + . gene_id "RvY_02041"; transcript_id "RvY_02041.1"; Scaffold001 rebuild transcript 5721998 5722174 . - . gene_id "RvY_02042"; transcript_id "RvY_02042.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5721998 5722174 . - . gene_id "RvY_02042"; transcript_id "RvY_02042.1"; Scaffold001 rebuild transcript 5722285 5723648 . + . gene_id "RvY_02043"; transcript_id "RvY_02043.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5722285 5722389 . + . gene_id "RvY_02043"; transcript_id "RvY_02043.1"; Scaffold001 rebuild exon 5722457 5722741 . + . gene_id "RvY_02043"; transcript_id "RvY_02043.1"; Scaffold001 rebuild exon 5722842 5723210 . + . gene_id "RvY_02043"; transcript_id "RvY_02043.1"; Scaffold001 rebuild exon 5723376 5723648 . + . gene_id "RvY_02043"; transcript_id "RvY_02043.1"; Scaffold001 rebuild transcript 5725598 5728052 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; gene_name "(1)TC.NSS"; annotation "(1,2)putative Sodium- and chloride-dependent glycine transporter 2(3)hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1)K03308"; similar_genes "(1)SC6A5_MOUSE(e-value:2.4e-33;bit-score:140.0)(2)SC6A5_MOUSE(e-value:1.0e-29;bit-score:128.0)"; Scaffold001 rebuild exon 5725598 5725668 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5725762 5725813 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5725893 5725928 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5725998 5726079 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5726158 5726181 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5726265 5726463 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5726550 5726680 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5726860 5727101 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5727234 5727289 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5727381 5727504 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5727581 5727631 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5727741 5727905 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild exon 5728014 5728052 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.1"; Scaffold001 rebuild transcript 5726225 5728052 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; gene_name "(1)TC.NSS"; annotation "(1,2)putative Sodium- and chloride-dependent glycine transporter 2(3)hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1)K03308"; similar_genes "(1)SC6A5_MOUSE(e-value:2.4e-33;bit-score:140.0)(2)SC6A5_MOUSE(e-value:1.0e-29;bit-score:128.0)"; Scaffold001 rebuild exon 5726225 5726463 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5726550 5726680 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5726860 5727101 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5727234 5727289 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5727381 5727504 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5727581 5727631 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5727741 5727905 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild exon 5728014 5728052 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.2"; Scaffold001 rebuild transcript 5724126 5725916 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; gene_name "(1)TC.NSS"; annotation "(1,2)putative Sodium- and chloride-dependent glycine transporter 2(3)hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1)K03308"; similar_genes "(1)SC6A5_MOUSE(e-value:2.4e-33;bit-score:140.0)(2)SC6A5_MOUSE(e-value:1.0e-29;bit-score:128.0)"; Scaffold001 rebuild exon 5724126 5724530 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5724730 5724927 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5725027 5725136 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5725202 5725247 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5725514 5725543 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5725643 5725668 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5725762 5725813 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild exon 5725893 5725916 . - . gene_id "RvY_02044"; transcript_id "RvY_02044.3"; Scaffold001 rebuild transcript 5729017 5731659 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; gene_name "GSR"; annotation "glutathione reductase (NADPH) [EC:1.8.1.7]"; Pfam "[FAD_binding_2] FAD binding domain|[Pyr_redox] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[DAO] FAD dependent oxidoreductase|[FAD_oxidored] FAD dependent oxidoreductase|[Pyr_redox_dim] Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain"; CDD "glutathione reductase; Validated"; EC "EC1.8.1.7"; KO "K00383"; similar_genes "GSHR_YARLI(e-value:9.4e-16;bit-score:81.0)"; Scaffold001 rebuild exon 5729017 5729175 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5729245 5729378 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5729461 5729701 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5730010 5730299 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5730414 5730500 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5730742 5730874 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5730992 5731180 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5731287 5731372 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild exon 5731554 5731659 . - . gene_id "RvY_02045"; transcript_id "RvY_02045.1"; Scaffold001 rebuild transcript 5732377 5732565 . + . gene_id "RvY_02046"; transcript_id "RvY_02046.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5732377 5732565 . + . gene_id "RvY_02046"; transcript_id "RvY_02046.1"; Scaffold001 rebuild transcript 5733395 5733637 . - . gene_id "RvY_02047"; transcript_id "RvY_02047.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5733395 5733637 . - . gene_id "RvY_02047"; transcript_id "RvY_02047.1"; Scaffold001 rebuild transcript 5733824 5734621 . - . gene_id "RvY_02048"; transcript_id "RvY_02048.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5733824 5734144 . - . gene_id "RvY_02048"; transcript_id "RvY_02048.1"; Scaffold001 rebuild exon 5734472 5734621 . - . gene_id "RvY_02048"; transcript_id "RvY_02048.1"; Scaffold001 rebuild transcript 5735161 5736425 . + . gene_id "RvY_02049"; transcript_id "RvY_02049.1"; gene_name "GCLM"; annotation "glutamate--cysteine ligase regulatory subunit"; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; CDD "Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]"; KO "K11205"; similar_genes "GSH0_MOUSE(e-value:5.4e-14;bit-score:76.0)"; Scaffold001 rebuild exon 5735161 5735244 . + . gene_id "RvY_02049"; transcript_id "RvY_02049.1"; Scaffold001 rebuild exon 5735451 5735601 . + . gene_id "RvY_02049"; transcript_id "RvY_02049.1"; Scaffold001 rebuild exon 5735667 5735908 . + . gene_id "RvY_02049"; transcript_id "RvY_02049.1"; Scaffold001 rebuild exon 5736001 5736115 . + . gene_id "RvY_02049"; transcript_id "RvY_02049.1"; Scaffold001 rebuild exon 5736256 5736425 . + . gene_id "RvY_02049"; transcript_id "RvY_02049.1"; Scaffold001 rebuild transcript 5736860 5737901 . - . gene_id "RvY_02050"; transcript_id "RvY_02050.1"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; Scaffold001 rebuild exon 5736860 5737053 . - . gene_id "RvY_02050"; transcript_id "RvY_02050.1"; Scaffold001 rebuild exon 5737147 5737609 . - . gene_id "RvY_02050"; transcript_id "RvY_02050.1"; Scaffold001 rebuild exon 5737824 5737901 . - . gene_id "RvY_02050"; transcript_id "RvY_02050.1"; Scaffold001 rebuild transcript 5738582 5739973 . - . gene_id "RvY_02051"; transcript_id "RvY_02051.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5738582 5738694 . - . gene_id "RvY_02051"; transcript_id "RvY_02051.1"; Scaffold001 rebuild exon 5739740 5739845 . - . gene_id "RvY_02051"; transcript_id "RvY_02051.1"; Scaffold001 rebuild exon 5739932 5739973 . - . gene_id "RvY_02051"; transcript_id "RvY_02051.1"; Scaffold001 rebuild transcript 5740270 5740983 . - . gene_id "RvY_02052"; transcript_id "RvY_02052.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5740270 5740565 . - . gene_id "RvY_02052"; transcript_id "RvY_02052.1"; Scaffold001 rebuild exon 5740641 5740983 . - . gene_id "RvY_02052"; transcript_id "RvY_02052.1"; Scaffold001 rebuild transcript 5740878 5741387 . - . gene_id "RvY_02052"; transcript_id "RvY_02052.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5740878 5740991 . - . gene_id "RvY_02052"; transcript_id "RvY_02052.2"; Scaffold001 rebuild exon 5741088 5741387 . - . gene_id "RvY_02052"; transcript_id "RvY_02052.2"; Scaffold001 rebuild transcript 5742108 5742257 . + . gene_id "RvY_02053"; transcript_id "RvY_02053.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5742108 5742257 . + . gene_id "RvY_02053"; transcript_id "RvY_02053.1"; Scaffold001 rebuild transcript 5744055 5744499 . - . gene_id "RvY_02054"; transcript_id "RvY_02054.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5744055 5744321 . - . gene_id "RvY_02054"; transcript_id "RvY_02054.1"; Scaffold001 rebuild exon 5744458 5744499 . - . gene_id "RvY_02054"; transcript_id "RvY_02054.1"; Scaffold001 rebuild transcript 5746875 5749250 . + . gene_id "RvY_02055"; transcript_id "RvY_02055.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5746875 5746930 . + . gene_id "RvY_02055"; transcript_id "RvY_02055.1"; Scaffold001 rebuild exon 5748974 5749250 . + . gene_id "RvY_02055"; transcript_id "RvY_02055.1"; Scaffold001 rebuild transcript 5750737 5751036 . + . gene_id "RvY_02056"; transcript_id "RvY_02056.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5750737 5751036 . + . gene_id "RvY_02056"; transcript_id "RvY_02056.1"; Scaffold001 rebuild transcript 5754964 5755585 . - . gene_id "RvY_02057"; transcript_id "RvY_02057.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5754964 5755148 . - . gene_id "RvY_02057"; transcript_id "RvY_02057.1"; Scaffold001 rebuild exon 5755387 5755585 . - . gene_id "RvY_02057"; transcript_id "RvY_02057.1"; Scaffold001 rebuild transcript 5756338 5756776 . - . gene_id "RvY_02058"; transcript_id "RvY_02058.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5756338 5756526 . - . gene_id "RvY_02058"; transcript_id "RvY_02058.1"; Scaffold001 rebuild exon 5756750 5756776 . - . gene_id "RvY_02058"; transcript_id "RvY_02058.1"; Scaffold001 rebuild transcript 5756985 5757176 . - . gene_id "RvY_02059"; transcript_id "RvY_02059.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5756985 5757176 . - . gene_id "RvY_02059"; transcript_id "RvY_02059.1"; Scaffold001 rebuild transcript 5757509 5757877 . + . gene_id "RvY_02060"; transcript_id "RvY_02060.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5757509 5757877 . + . gene_id "RvY_02060"; transcript_id "RvY_02060.1"; Scaffold001 rebuild transcript 5759778 5768488 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 5759778 5759822 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5762066 5762480 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5762681 5762817 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5762872 5763295 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5763488 5764078 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5764297 5766896 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5766966 5767341 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5767510 5767847 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5767927 5767980 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild exon 5768159 5768488 . + . gene_id "RvY_02061"; transcript_id "RvY_02061.1"; Scaffold001 rebuild transcript 5769186 5769704 . - . gene_id "RvY_02062"; transcript_id "RvY_02062.1"; gene_name "FN3"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain"; CDD "Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases."; Scaffold001 rebuild exon 5769186 5769704 . - . gene_id "RvY_02062"; transcript_id "RvY_02062.1"; Scaffold001 rebuild transcript 5770610 5772070 . - . gene_id "RvY_02063"; transcript_id "RvY_02063.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5770610 5770961 . - . gene_id "RvY_02063"; transcript_id "RvY_02063.1"; Scaffold001 rebuild exon 5771024 5771731 . - . gene_id "RvY_02063"; transcript_id "RvY_02063.1"; Scaffold001 rebuild exon 5771922 5772070 . - . gene_id "RvY_02063"; transcript_id "RvY_02063.1"; Scaffold001 rebuild transcript 5771979 5774317 . + . gene_id "RvY_02064"; transcript_id "RvY_02064.1"; gene_name "SKP1"; annotation "hypothetical protein."; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain|[Skp1] Skp1 family, dimerisation domain"; CDD "SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 5771979 5772046 . + . gene_id "RvY_02064"; transcript_id "RvY_02064.1"; Scaffold001 rebuild exon 5773496 5773658 . + . gene_id "RvY_02064"; transcript_id "RvY_02064.1"; Scaffold001 rebuild exon 5773717 5773827 . + . gene_id "RvY_02064"; transcript_id "RvY_02064.1"; Scaffold001 rebuild exon 5773982 5774317 . + . gene_id "RvY_02064"; transcript_id "RvY_02064.1"; Scaffold001 rebuild transcript 5774730 5777224 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; gene_name "VPS45"; annotation "putative Vacuolar protein sorting-associated protein 45"; Pfam "[Sec1] Sec1 family"; KO "K12479"; similar_genes "VPS45_HUMAN(e-value:7.9e-47;bit-score:185.0)"; Scaffold001 rebuild exon 5774730 5774766 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5774834 5775087 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5775193 5775465 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5775604 5775774 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5775864 5776109 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5776172 5776489 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5776712 5776791 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5776856 5777054 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild exon 5777132 5777224 . - . gene_id "RvY_02065"; transcript_id "RvY_02065.1"; Scaffold001 rebuild transcript 5777922 5779509 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5777922 5777988 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.1"; Scaffold001 rebuild exon 5778072 5778134 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.1"; Scaffold001 rebuild exon 5778271 5778816 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.1"; Scaffold001 rebuild exon 5779100 5779261 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.1"; Scaffold001 rebuild exon 5779328 5779509 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.1"; Scaffold001 rebuild transcript 5777922 5779509 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5777922 5777988 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.2"; Scaffold001 rebuild exon 5778271 5778816 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.2"; Scaffold001 rebuild exon 5779100 5779261 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.2"; Scaffold001 rebuild exon 5779328 5779509 . + . gene_id "RvY_02066"; transcript_id "RvY_02066.2"; Scaffold001 rebuild transcript 5781474 5781788 . - . gene_id "RvY_02067"; transcript_id "RvY_02067.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5781474 5781788 . - . gene_id "RvY_02067"; transcript_id "RvY_02067.1"; Scaffold001 rebuild transcript 5781896 5783262 . - . gene_id "RvY_02068"; transcript_id "RvY_02068.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5781896 5782098 . - . gene_id "RvY_02068"; transcript_id "RvY_02068.1"; Scaffold001 rebuild exon 5782162 5782283 . - . gene_id "RvY_02068"; transcript_id "RvY_02068.1"; Scaffold001 rebuild exon 5782494 5782534 . - . gene_id "RvY_02068"; transcript_id "RvY_02068.1"; Scaffold001 rebuild exon 5782618 5783262 . - . gene_id "RvY_02068"; transcript_id "RvY_02068.1"; Scaffold001 rebuild transcript 5784238 5784465 . + . gene_id "RvY_02069"; transcript_id "RvY_02069.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5784238 5784465 . + . gene_id "RvY_02069"; transcript_id "RvY_02069.1"; Scaffold001 rebuild transcript 5785041 5785681 . - . gene_id "RvY_02070"; transcript_id "RvY_02070.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5785041 5785210 . - . gene_id "RvY_02070"; transcript_id "RvY_02070.1"; Scaffold001 rebuild exon 5785298 5785442 . - . gene_id "RvY_02070"; transcript_id "RvY_02070.1"; Scaffold001 rebuild exon 5785538 5785681 . - . gene_id "RvY_02070"; transcript_id "RvY_02070.1"; Scaffold001 rebuild transcript 5786685 5787057 . - . gene_id "RvY_02071"; transcript_id "RvY_02071.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5786685 5786854 . - . gene_id "RvY_02071"; transcript_id "RvY_02071.1"; Scaffold001 rebuild exon 5786943 5787057 . - . gene_id "RvY_02071"; transcript_id "RvY_02071.1"; Scaffold001 rebuild transcript 5787558 5787791 . + . gene_id "RvY_02072"; transcript_id "RvY_02072.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5787558 5787791 . + . gene_id "RvY_02072"; transcript_id "RvY_02072.1"; Scaffold001 rebuild transcript 5788020 5790901 . + . gene_id "RvY_02073"; transcript_id "RvY_02073.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5788020 5788230 . + . gene_id "RvY_02073"; transcript_id "RvY_02073.1"; Scaffold001 rebuild exon 5788319 5788654 . + . gene_id "RvY_02073"; transcript_id "RvY_02073.1"; Scaffold001 rebuild exon 5790828 5790901 . + . gene_id "RvY_02073"; transcript_id "RvY_02073.1"; Scaffold001 rebuild transcript 5791766 5804705 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; gene_name "RASGRF2"; annotation "Ras-specific guanine nucleotide-releasing factor 1"; Pfam "[PH]|[RasGEF_N] RasGEF N-terminal motif|[RhoGEF]|[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; KO "K12326"; similar_genes "RGRF1_HUMAN(e-value:2.1e-66;bit-score:250.0)"; Scaffold001 rebuild exon 5791766 5792047 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5792217 5792612 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5792675 5792857 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5792944 5793123 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5793533 5794074 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5794284 5795018 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5795484 5795686 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5795829 5796007 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5797650 5797808 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5797964 5798151 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5798359 5798610 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5799655 5799772 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5800027 5800411 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5800480 5800598 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5800739 5801071 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5801358 5801505 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5801599 5801705 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild exon 5804388 5804705 . - . gene_id "RvY_02074"; transcript_id "RvY_02074.1"; Scaffold001 rebuild transcript 5807729 5807947 . + . gene_id "RvY_02075"; transcript_id "RvY_02075.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5807729 5807947 . + . gene_id "RvY_02075"; transcript_id "RvY_02075.1"; Scaffold001 rebuild transcript 5809040 5811260 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; gene_name "rocF_arginase"; annotation "hypothetical protein."; Pfam "[Arginase] Arginase family"; CDD "arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase)."; Scaffold001 rebuild exon 5809040 5809138 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild exon 5809205 5809459 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild exon 5809677 5809978 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild exon 5810220 5810276 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild exon 5810383 5810487 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild exon 5810573 5810736 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild exon 5811115 5811260 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.1"; Scaffold001 rebuild transcript 5809040 5810816 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; gene_name "rocF_arginase"; annotation "hypothetical protein."; Pfam "[Arginase] Arginase family"; CDD "arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase)."; Scaffold001 rebuild exon 5809040 5809138 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; Scaffold001 rebuild exon 5809205 5809459 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; Scaffold001 rebuild exon 5809677 5809978 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; Scaffold001 rebuild exon 5810220 5810276 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; Scaffold001 rebuild exon 5810383 5810487 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; Scaffold001 rebuild exon 5810573 5810816 . + . gene_id "RvY_02076"; transcript_id "RvY_02076.2"; Scaffold001 rebuild transcript 5812394 5812564 . - . gene_id "RvY_02077"; transcript_id "RvY_02077.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5812394 5812564 . - . gene_id "RvY_02077"; transcript_id "RvY_02077.1"; Scaffold001 rebuild transcript 5814423 5815230 . + . gene_id "RvY_02078"; transcript_id "RvY_02078.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold001 rebuild exon 5814423 5814795 . + . gene_id "RvY_02078"; transcript_id "RvY_02078.1"; Scaffold001 rebuild exon 5814869 5815230 . + . gene_id "RvY_02078"; transcript_id "RvY_02078.1"; Scaffold001 rebuild transcript 5816500 5819666 . - . gene_id "RvY_02079"; transcript_id "RvY_02079.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5816500 5816645 . - . gene_id "RvY_02079"; transcript_id "RvY_02079.1"; Scaffold001 rebuild exon 5817539 5817671 . - . gene_id "RvY_02079"; transcript_id "RvY_02079.1"; Scaffold001 rebuild exon 5817754 5817939 . - . gene_id "RvY_02079"; transcript_id "RvY_02079.1"; Scaffold001 rebuild exon 5818141 5818290 . - . gene_id "RvY_02079"; transcript_id "RvY_02079.1"; Scaffold001 rebuild exon 5819598 5819666 . - . gene_id "RvY_02079"; transcript_id "RvY_02079.1"; Scaffold001 rebuild transcript 5820636 5822980 . + . gene_id "RvY_02080"; transcript_id "RvY_02080.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5820636 5820720 . + . gene_id "RvY_02080"; transcript_id "RvY_02080.1"; Scaffold001 rebuild exon 5822814 5822980 . + . gene_id "RvY_02080"; transcript_id "RvY_02080.1"; Scaffold001 rebuild transcript 5824062 5825078 . + . gene_id "RvY_02081"; transcript_id "RvY_02081.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5824062 5824308 . + . gene_id "RvY_02081"; transcript_id "RvY_02081.1"; Scaffold001 rebuild exon 5824810 5825078 . + . gene_id "RvY_02081"; transcript_id "RvY_02081.1"; Scaffold001 rebuild transcript 5825575 5825763 . + . gene_id "RvY_02082"; transcript_id "RvY_02082.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5825575 5825763 . + . gene_id "RvY_02082"; transcript_id "RvY_02082.1"; Scaffold001 rebuild transcript 5826479 5827262 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5826479 5826756 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.1"; Scaffold001 rebuild exon 5826858 5827038 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.1"; Scaffold001 rebuild exon 5827116 5827262 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.1"; Scaffold001 rebuild transcript 5827167 5827919 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5827167 5827229 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.2"; Scaffold001 rebuild exon 5827290 5827335 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.2"; Scaffold001 rebuild exon 5827407 5827481 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.2"; Scaffold001 rebuild exon 5827580 5827797 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.2"; Scaffold001 rebuild exon 5827884 5827919 . + . gene_id "RvY_02083"; transcript_id "RvY_02083.2"; Scaffold001 rebuild transcript 5828022 5830376 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; gene_name "FUCA"; annotation "Plasma alpha-L-fucosidase"; Pfam "[Alpha_L_fucos] Alpha-L-fucosidase"; CDD "Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis."; EC "EC3.2.1.51"; KO "K01206"; similar_genes "FUCO2_MOUSE(e-value:2.0e-77;bit-score:286.0)"; Scaffold001 rebuild exon 5828022 5828385 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5828448 5828593 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5828669 5828693 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5828950 5829082 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5829202 5829299 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5829378 5829441 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5829509 5829578 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5829646 5829883 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5829941 5830102 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild exon 5830171 5830376 . - . gene_id "RvY_02084"; transcript_id "RvY_02084.1"; Scaffold001 rebuild transcript 5833456 5834928 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5833456 5833479 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.1"; Scaffold001 rebuild exon 5833515 5833622 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.1"; Scaffold001 rebuild exon 5833642 5833855 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.1"; Scaffold001 rebuild exon 5834846 5834928 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.1"; Scaffold001 rebuild transcript 5833500 5833893 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5833500 5833742 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.2"; Scaffold001 rebuild exon 5833795 5833893 . + . gene_id "RvY_02085"; transcript_id "RvY_02085.2"; Scaffold001 rebuild transcript 5841595 5842284 . + . gene_id "RvY_02086"; transcript_id "RvY_02086.1"; annotation "hypothetical protein."; Pfam "[HtrL_YibB] Bacterial protein of unknown function (HtrL_YibB)"; Scaffold001 rebuild exon 5841595 5842284 . + . gene_id "RvY_02086"; transcript_id "RvY_02086.1"; Scaffold001 rebuild transcript 5841640 5842287 . + . gene_id "RvY_02086"; transcript_id "RvY_02086.2"; annotation "hypothetical protein."; Pfam "[HtrL_YibB] Bacterial protein of unknown function (HtrL_YibB)"; Scaffold001 rebuild exon 5841640 5842287 . + . gene_id "RvY_02086"; transcript_id "RvY_02086.2"; Scaffold001 rebuild transcript 5845855 5846367 . - . gene_id "RvY_02087"; transcript_id "RvY_02087.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5845855 5846192 . - . gene_id "RvY_02087"; transcript_id "RvY_02087.1"; Scaffold001 rebuild exon 5846289 5846367 . - . gene_id "RvY_02087"; transcript_id "RvY_02087.1"; Scaffold001 rebuild transcript 5846517 5846726 . - . gene_id "RvY_02088"; transcript_id "RvY_02088.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5846517 5846726 . - . gene_id "RvY_02088"; transcript_id "RvY_02088.1"; Scaffold001 rebuild transcript 5848394 5848859 . - . gene_id "RvY_02089"; transcript_id "RvY_02089.1"; gene_name "GT8_like_2"; annotation "hypothetical protein."; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed."; Scaffold001 rebuild exon 5848394 5848597 . - . gene_id "RvY_02089"; transcript_id "RvY_02089.1"; Scaffold001 rebuild exon 5848679 5848791 . - . gene_id "RvY_02089"; transcript_id "RvY_02089.1"; Scaffold001 rebuild exon 5848814 5848859 . - . gene_id "RvY_02089"; transcript_id "RvY_02089.1"; Scaffold001 rebuild transcript 5854291 5855259 . + . gene_id "RvY_02090"; transcript_id "RvY_02090.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_21] Methyltransferase FkbM domain|[Methyltransf_22] Methyltransferase domain"; Scaffold001 rebuild exon 5854291 5855259 . + . gene_id "RvY_02090"; transcript_id "RvY_02090.1"; Scaffold001 rebuild transcript 5859883 5860674 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5859883 5860163 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.1"; Scaffold001 rebuild exon 5860236 5860674 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.1"; Scaffold001 rebuild transcript 5860315 5862792 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5860315 5860670 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.2"; Scaffold001 rebuild exon 5862483 5862792 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.2"; Scaffold001 rebuild transcript 5860654 5868260 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5860654 5860670 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.3"; Scaffold001 rebuild exon 5867912 5868260 . + . gene_id "RvY_02091"; transcript_id "RvY_02091.3"; Scaffold001 rebuild transcript 5862456 5863221 . - . gene_id "RvY_02092"; transcript_id "RvY_02092.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5862456 5863091 . - . gene_id "RvY_02092"; transcript_id "RvY_02092.1"; Scaffold001 rebuild exon 5863183 5863221 . - . gene_id "RvY_02092"; transcript_id "RvY_02092.1"; Scaffold001 rebuild transcript 5863225 5864047 . - . gene_id "RvY_02093"; transcript_id "RvY_02093.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5863225 5863404 . - . gene_id "RvY_02093"; transcript_id "RvY_02093.1"; Scaffold001 rebuild exon 5863541 5864047 . - . gene_id "RvY_02093"; transcript_id "RvY_02093.1"; Scaffold001 rebuild transcript 5873332 5873729 . - . gene_id "RvY_02094"; transcript_id "RvY_02094.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5873332 5873505 . - . gene_id "RvY_02094"; transcript_id "RvY_02094.1"; Scaffold001 rebuild exon 5873613 5873729 . - . gene_id "RvY_02094"; transcript_id "RvY_02094.1"; Scaffold001 rebuild transcript 5873735 5874459 . - . gene_id "RvY_02095"; transcript_id "RvY_02095.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5873735 5874015 . - . gene_id "RvY_02095"; transcript_id "RvY_02095.1"; Scaffold001 rebuild exon 5874282 5874459 . - . gene_id "RvY_02095"; transcript_id "RvY_02095.1"; Scaffold001 rebuild transcript 5878584 5879294 . + . gene_id "RvY_02096"; transcript_id "RvY_02096.1"; annotation "hypothetical protein."; Pfam "[Gal-3-0_sulfotr] Galactose-3-O-sulfotransferase"; Scaffold001 rebuild exon 5878584 5879294 . + . gene_id "RvY_02096"; transcript_id "RvY_02096.1"; Scaffold001 rebuild transcript 5881328 5883414 . - . gene_id "RvY_02097"; transcript_id "RvY_02097.1"; gene_name "rfbB"; annotation "dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; CDD "dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]"; EC "EC4.2.1.-|EC4.2.1.46"; KO "K01710"; similar_genes "RHM3_ARATH(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 5881328 5882369 . - . gene_id "RvY_02097"; transcript_id "RvY_02097.1"; Scaffold001 rebuild exon 5882465 5883414 . - . gene_id "RvY_02097"; transcript_id "RvY_02097.1"; Scaffold001 rebuild transcript 5888569 5889024 . - . gene_id "RvY_02098"; transcript_id "RvY_02098.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5888569 5889024 . - . gene_id "RvY_02098"; transcript_id "RvY_02098.1"; Scaffold001 rebuild transcript 5889525 5890468 . - . gene_id "RvY_02099"; transcript_id "RvY_02099.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5889525 5889548 . - . gene_id "RvY_02099"; transcript_id "RvY_02099.1"; Scaffold001 rebuild exon 5889617 5890107 . - . gene_id "RvY_02099"; transcript_id "RvY_02099.1"; Scaffold001 rebuild exon 5890165 5890468 . - . gene_id "RvY_02099"; transcript_id "RvY_02099.1"; Scaffold001 rebuild transcript 5891782 5892396 . - . gene_id "RvY_02100"; transcript_id "RvY_02100.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold001 rebuild exon 5891782 5892396 . - . gene_id "RvY_02100"; transcript_id "RvY_02100.1"; Scaffold001 rebuild transcript 5892601 5895084 . - . gene_id "RvY_02101"; transcript_id "RvY_02101.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5892601 5892917 . - . gene_id "RvY_02101"; transcript_id "RvY_02101.1"; Scaffold001 rebuild exon 5893478 5893856 . - . gene_id "RvY_02101"; transcript_id "RvY_02101.1"; Scaffold001 rebuild exon 5894143 5895084 . - . gene_id "RvY_02101"; transcript_id "RvY_02101.1"; Scaffold001 rebuild transcript 5896833 5896997 . - . gene_id "RvY_02102"; transcript_id "RvY_02102.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5896833 5896997 . - . gene_id "RvY_02102"; transcript_id "RvY_02102.1"; Scaffold001 rebuild transcript 5897206 5897451 . + . gene_id "RvY_02103"; transcript_id "RvY_02103.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5897206 5897451 . + . gene_id "RvY_02103"; transcript_id "RvY_02103.1"; Scaffold001 rebuild transcript 5899574 5900597 . + . gene_id "RvY_02104"; transcript_id "RvY_02104.1"; gene_name "H3"; annotation "hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; similar_genes "H3_MASBA(e-value:5.4e-14;bit-score:76.0)"; Scaffold001 rebuild exon 5899574 5900083 . + . gene_id "RvY_02104"; transcript_id "RvY_02104.1"; Scaffold001 rebuild exon 5900324 5900432 . + . gene_id "RvY_02104"; transcript_id "RvY_02104.1"; Scaffold001 rebuild exon 5900521 5900597 . + . gene_id "RvY_02104"; transcript_id "RvY_02104.1"; Scaffold001 rebuild transcript 5901855 5902229 . + . gene_id "RvY_02105"; transcript_id "RvY_02105.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5901855 5902229 . + . gene_id "RvY_02105"; transcript_id "RvY_02105.1"; Scaffold001 rebuild transcript 5901860 5902180 . - . gene_id "RvY_02106"; transcript_id "RvY_02106.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5901860 5902180 . - . gene_id "RvY_02106"; transcript_id "RvY_02106.1"; Scaffold001 rebuild transcript 5903712 5904149 . + . gene_id "RvY_02107"; transcript_id "RvY_02107.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5903712 5904149 . + . gene_id "RvY_02107"; transcript_id "RvY_02107.1"; Scaffold001 rebuild transcript 5904071 5904400 . + . gene_id "RvY_02107"; transcript_id "RvY_02107.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5904071 5904400 . + . gene_id "RvY_02107"; transcript_id "RvY_02107.2"; Scaffold001 rebuild transcript 5905656 5906979 . + . gene_id "RvY_02108"; transcript_id "RvY_02108.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5905656 5906000 . + . gene_id "RvY_02108"; transcript_id "RvY_02108.1"; Scaffold001 rebuild exon 5906088 5906767 . + . gene_id "RvY_02108"; transcript_id "RvY_02108.1"; Scaffold001 rebuild exon 5906868 5906979 . + . gene_id "RvY_02108"; transcript_id "RvY_02108.1"; Scaffold001 rebuild transcript 5914223 5915439 . + . gene_id "RvY_02109"; transcript_id "RvY_02109.1"; gene_name "H3"; annotation "(1)putative Histone H3.2(2)hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; similar_genes "(1)H32_LILLO(e-value:1.0e-27;bit-score:121.0)(2)H33L1_CAEEL(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 5914223 5914696 . + . gene_id "RvY_02109"; transcript_id "RvY_02109.1"; Scaffold001 rebuild exon 5915153 5915261 . + . gene_id "RvY_02109"; transcript_id "RvY_02109.1"; Scaffold001 rebuild exon 5915351 5915439 . + . gene_id "RvY_02109"; transcript_id "RvY_02109.1"; Scaffold001 rebuild transcript 5914223 5914747 . + . gene_id "RvY_02109"; transcript_id "RvY_02109.2"; gene_name "H3"; annotation "(1)putative Histone H3.2(2)hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; similar_genes "(1)H32_LILLO(e-value:1.0e-27;bit-score:121.0)(2)H33L1_CAEEL(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 5914223 5914747 . + . gene_id "RvY_02109"; transcript_id "RvY_02109.2"; Scaffold001 rebuild transcript 5916085 5917815 . - . gene_id "RvY_02110"; transcript_id "RvY_02110.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; similar_genes "CRVP_OPHHA(e-value:6.6e-06;bit-score:49.0)"; Scaffold001 rebuild exon 5916085 5916848 . - . gene_id "RvY_02110"; transcript_id "RvY_02110.1"; Scaffold001 rebuild exon 5916918 5917003 . - . gene_id "RvY_02110"; transcript_id "RvY_02110.1"; Scaffold001 rebuild exon 5917087 5917175 . - . gene_id "RvY_02110"; transcript_id "RvY_02110.1"; Scaffold001 rebuild exon 5917240 5917391 . - . gene_id "RvY_02110"; transcript_id "RvY_02110.1"; Scaffold001 rebuild exon 5917464 5917815 . - . gene_id "RvY_02110"; transcript_id "RvY_02110.1"; Scaffold001 rebuild transcript 5919005 5920252 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; gene_name "PTZ00057"; annotation "hypothetical protein."; Pfam "[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "glutathione s-transferase; Provisional"; Scaffold001 rebuild exon 5919005 5919151 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; Scaffold001 rebuild exon 5919242 5919277 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; Scaffold001 rebuild exon 5919345 5919455 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; Scaffold001 rebuild exon 5919551 5919666 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; Scaffold001 rebuild exon 5919916 5920008 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; Scaffold001 rebuild exon 5920084 5920252 . - . gene_id "RvY_02111"; transcript_id "RvY_02111.1"; Scaffold001 rebuild transcript 5920467 5920648 . + . gene_id "RvY_02112"; transcript_id "RvY_02112.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5920467 5920610 . + . gene_id "RvY_02112"; transcript_id "RvY_02112.1"; Scaffold001 rebuild exon 5920619 5920648 . + . gene_id "RvY_02112"; transcript_id "RvY_02112.1"; Scaffold001 rebuild transcript 5921665 5922069 . + . gene_id "RvY_02113"; transcript_id "RvY_02113.1"; gene_name "TIGR00049"; annotation "putative Iron-sulfur cluster assembly 1 homolog, mitochondrial"; Pfam "[Fe-S_biosyn] Iron-sulphur cluster biosynthesis"; CDD "Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry."; KO "K13628"; similar_genes "ISCA1_DANRE(e-value:1.2e-45;bit-score:181.0)"; Scaffold001 rebuild exon 5921665 5922069 . + . gene_id "RvY_02113"; transcript_id "RvY_02113.1"; Scaffold001 rebuild transcript 5923614 5929264 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; annotation "WASH complex subunit strumpellin"; Pfam "[Strumpellin] Hereditary spastic paraplegia protein strumpellin"; similar_genes "STRUM_HUMAN(e-value:1.9e-86;bit-score:316.0)"; Scaffold001 rebuild exon 5923614 5923835 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5923909 5924015 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5924104 5924188 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5924393 5924683 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5924763 5924915 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5925095 5925386 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5925456 5925583 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5925652 5925781 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5925837 5925949 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5926191 5926476 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5926798 5927087 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5927163 5927264 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5927371 5927550 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5927650 5927774 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5927847 5928109 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5928183 5928366 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5928454 5928595 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5928678 5928774 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5928899 5929143 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild exon 5929211 5929264 . + . gene_id "RvY_02114"; transcript_id "RvY_02114.1"; Scaffold001 rebuild transcript 5930231 5930428 . + . gene_id "RvY_02115"; transcript_id "RvY_02115.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5930231 5930428 . + . gene_id "RvY_02115"; transcript_id "RvY_02115.1"; Scaffold001 rebuild transcript 5930605 5931298 . + . gene_id "RvY_02116"; transcript_id "RvY_02116.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5930605 5930797 . + . gene_id "RvY_02116"; transcript_id "RvY_02116.1"; Scaffold001 rebuild exon 5930961 5931298 . + . gene_id "RvY_02116"; transcript_id "RvY_02116.1"; Scaffold001 rebuild transcript 5931949 5932137 . - . gene_id "RvY_02117"; transcript_id "RvY_02117.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5931949 5932137 . - . gene_id "RvY_02117"; transcript_id "RvY_02117.1"; Scaffold001 rebuild transcript 5933228 5933611 . - . gene_id "RvY_02118"; transcript_id "RvY_02118.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold001 rebuild exon 5933228 5933611 . - . gene_id "RvY_02118"; transcript_id "RvY_02118.1"; Scaffold001 rebuild transcript 5933964 5935259 . - . gene_id "RvY_02119"; transcript_id "RvY_02119.1"; annotation "hypothetical protein."; Pfam "[DUF4218]"; Scaffold001 rebuild exon 5933964 5935259 . - . gene_id "RvY_02119"; transcript_id "RvY_02119.1"; Scaffold001 rebuild transcript 5935927 5936646 . + . gene_id "RvY_02120"; transcript_id "RvY_02120.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5935927 5935962 . + . gene_id "RvY_02120"; transcript_id "RvY_02120.1"; Scaffold001 rebuild exon 5936533 5936646 . + . gene_id "RvY_02120"; transcript_id "RvY_02120.1"; Scaffold001 rebuild transcript 5940520 5943006 . - . gene_id "RvY_02121"; transcript_id "RvY_02121.1"; gene_name "DUF659"; annotation "hypothetical protein."; Pfam "[DUF659] Protein of unknown function (DUF 659)"; CDD "Protein of unknown function (DUF 659). Transposase-like protein with no known function."; Scaffold001 rebuild exon 5940520 5940689 . - . gene_id "RvY_02121"; transcript_id "RvY_02121.1"; Scaffold001 rebuild exon 5940958 5941603 . - . gene_id "RvY_02121"; transcript_id "RvY_02121.1"; Scaffold001 rebuild exon 5941707 5942200 . - . gene_id "RvY_02121"; transcript_id "RvY_02121.1"; Scaffold001 rebuild exon 5942268 5942861 . - . gene_id "RvY_02121"; transcript_id "RvY_02121.1"; Scaffold001 rebuild exon 5942922 5943006 . - . gene_id "RvY_02121"; transcript_id "RvY_02121.1"; Scaffold001 rebuild transcript 5949589 5952320 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5949589 5949707 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5950046 5950384 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5950634 5950721 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5950799 5950971 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5951055 5951320 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5951516 5951721 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5951850 5952128 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild exon 5952213 5952320 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.1"; Scaffold001 rebuild transcript 5949963 5952320 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5949963 5950384 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild exon 5950634 5950721 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild exon 5950799 5950971 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild exon 5951055 5951320 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild exon 5951516 5951721 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild exon 5951850 5952128 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild exon 5952213 5952320 . - . gene_id "RvY_02122"; transcript_id "RvY_02122.2"; Scaffold001 rebuild transcript 5952784 5953856 . - . gene_id "RvY_02123"; transcript_id "RvY_02123.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5952784 5953473 . - . gene_id "RvY_02123"; transcript_id "RvY_02123.1"; Scaffold001 rebuild exon 5953578 5953856 . - . gene_id "RvY_02123"; transcript_id "RvY_02123.1"; Scaffold001 rebuild transcript 5953747 5953965 . + . gene_id "RvY_02124"; transcript_id "RvY_02124.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5953747 5953965 . + . gene_id "RvY_02124"; transcript_id "RvY_02124.1"; Scaffold001 rebuild transcript 5954544 5956267 . - . gene_id "RvY_02125"; transcript_id "RvY_02125.1"; annotation "hypothetical protein."; Pfam "[MAM]"; Scaffold001 rebuild exon 5954544 5954780 . - . gene_id "RvY_02125"; transcript_id "RvY_02125.1"; Scaffold001 rebuild exon 5954863 5955158 . - . gene_id "RvY_02125"; transcript_id "RvY_02125.1"; Scaffold001 rebuild exon 5955239 5955608 . - . gene_id "RvY_02125"; transcript_id "RvY_02125.1"; Scaffold001 rebuild exon 5955680 5955942 . - . gene_id "RvY_02125"; transcript_id "RvY_02125.1"; Scaffold001 rebuild exon 5956063 5956267 . - . gene_id "RvY_02125"; transcript_id "RvY_02125.1"; Scaffold001 rebuild transcript 5958107 5960267 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 5958107 5958161 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5958244 5958521 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5958584 5958644 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5958742 5958819 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5958880 5959127 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5959212 5959427 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5959690 5960099 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild exon 5960180 5960267 . + . gene_id "RvY_02126"; transcript_id "RvY_02126.1"; Scaffold001 rebuild transcript 5967530 5968555 . + . gene_id "RvY_02127"; transcript_id "RvY_02127.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 5967530 5968555 . + . gene_id "RvY_02127"; transcript_id "RvY_02127.1"; Scaffold001 rebuild transcript 5969266 5974943 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 5969266 5969383 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; Scaffold001 rebuild exon 5969446 5969857 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; Scaffold001 rebuild exon 5969937 5970050 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; Scaffold001 rebuild exon 5970108 5971002 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; Scaffold001 rebuild exon 5974221 5974492 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; Scaffold001 rebuild exon 5974631 5974943 . + . gene_id "RvY_02128"; transcript_id "RvY_02128.1"; Scaffold001 rebuild transcript 5975205 5975447 . + . gene_id "RvY_02129"; transcript_id "RvY_02129.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5975205 5975447 . + . gene_id "RvY_02129"; transcript_id "RvY_02129.1"; Scaffold001 rebuild transcript 5975503 5976232 . + . gene_id "RvY_02130"; transcript_id "RvY_02130.1"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold001 rebuild exon 5975503 5975602 . + . gene_id "RvY_02130"; transcript_id "RvY_02130.1"; Scaffold001 rebuild exon 5975697 5976232 . + . gene_id "RvY_02130"; transcript_id "RvY_02130.1"; Scaffold001 rebuild transcript 5976236 5977566 . + . gene_id "RvY_02131"; transcript_id "RvY_02131.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5976236 5976387 . + . gene_id "RvY_02131"; transcript_id "RvY_02131.1"; Scaffold001 rebuild exon 5976475 5976771 . + . gene_id "RvY_02131"; transcript_id "RvY_02131.1"; Scaffold001 rebuild exon 5976872 5977095 . + . gene_id "RvY_02131"; transcript_id "RvY_02131.1"; Scaffold001 rebuild exon 5977157 5977566 . + . gene_id "RvY_02131"; transcript_id "RvY_02131.1"; Scaffold001 rebuild transcript 5981081 5984663 . - . gene_id "RvY_02132"; transcript_id "RvY_02132.1"; annotation "hypothetical protein."; Pfam "[PAP_central] Poly(A) polymerase central domain|[NTP_transf_2] Nucleotidyltransferase domain|[PAP_RNA-bind] Poly(A) polymerase predicted RNA binding domain"; EC "EC2.7.7.19"; KO "K14376"; similar_genes "PAPOA_BOVIN(e-value:8.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 5981081 5982012 . - . gene_id "RvY_02132"; transcript_id "RvY_02132.1"; Scaffold001 rebuild exon 5982432 5982676 . - . gene_id "RvY_02132"; transcript_id "RvY_02132.1"; Scaffold001 rebuild exon 5982975 5983362 . - . gene_id "RvY_02132"; transcript_id "RvY_02132.1"; Scaffold001 rebuild exon 5983599 5983942 . - . gene_id "RvY_02132"; transcript_id "RvY_02132.1"; Scaffold001 rebuild exon 5984122 5984663 . - . gene_id "RvY_02132"; transcript_id "RvY_02132.1"; Scaffold001 rebuild transcript 5985443 5986814 . - . gene_id "RvY_02133"; transcript_id "RvY_02133.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5985443 5985866 . - . gene_id "RvY_02133"; transcript_id "RvY_02133.1"; Scaffold001 rebuild exon 5985930 5986604 . - . gene_id "RvY_02133"; transcript_id "RvY_02133.1"; Scaffold001 rebuild exon 5986672 5986814 . - . gene_id "RvY_02133"; transcript_id "RvY_02133.1"; Scaffold001 rebuild transcript 5987607 5988527 . + . gene_id "RvY_02134"; transcript_id "RvY_02134.1"; annotation "hypothetical protein."; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; Scaffold001 rebuild exon 5987607 5987772 . + . gene_id "RvY_02134"; transcript_id "RvY_02134.1"; Scaffold001 rebuild exon 5988061 5988222 . + . gene_id "RvY_02134"; transcript_id "RvY_02134.1"; Scaffold001 rebuild exon 5988301 5988527 . + . gene_id "RvY_02134"; transcript_id "RvY_02134.1"; Scaffold001 rebuild transcript 5988392 5988808 . + . gene_id "RvY_02134"; transcript_id "RvY_02134.2"; annotation "hypothetical protein."; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; Scaffold001 rebuild exon 5988392 5988808 . + . gene_id "RvY_02134"; transcript_id "RvY_02134.2"; Scaffold001 rebuild transcript 5988990 5989766 . + . gene_id "RvY_02135"; transcript_id "RvY_02135.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5988990 5989155 . + . gene_id "RvY_02135"; transcript_id "RvY_02135.1"; Scaffold001 rebuild exon 5989333 5989766 . + . gene_id "RvY_02135"; transcript_id "RvY_02135.1"; Scaffold001 rebuild transcript 5989969 5991194 . - . gene_id "RvY_02136"; transcript_id "RvY_02136.1"; annotation "putative Mitochondrial carnitine/acylcarnitine carrier protein CACL"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15109"; similar_genes "MCATL_MOUSE(e-value:1.3e-36;bit-score:151.0)"; Scaffold001 rebuild exon 5989969 5990417 . - . gene_id "RvY_02136"; transcript_id "RvY_02136.1"; Scaffold001 rebuild exon 5990472 5990877 . - . gene_id "RvY_02136"; transcript_id "RvY_02136.1"; Scaffold001 rebuild exon 5991126 5991194 . - . gene_id "RvY_02136"; transcript_id "RvY_02136.1"; Scaffold001 rebuild transcript 5993139 5993396 . + . gene_id "RvY_02137"; transcript_id "RvY_02137.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5993139 5993396 . + . gene_id "RvY_02137"; transcript_id "RvY_02137.1"; Scaffold001 rebuild transcript 5993002 5993244 . + . gene_id "RvY_02137"; transcript_id "RvY_02137.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 5993002 5993244 . + . gene_id "RvY_02137"; transcript_id "RvY_02137.2"; Scaffold001 rebuild transcript 5994916 6000827 . - . gene_id "RvY_02138"; transcript_id "RvY_02138.1"; gene_name "RHOU"; annotation "putative Rho-related GTP-binding protein RhoU"; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of Scaffold001 rebuild exon 5994916 5995425 . - . gene_id "RvY_02138"; transcript_id "RvY_02138.1"; Scaffold001 rebuild exon 6000013 6000071 . - . gene_id "RvY_02138"; transcript_id "RvY_02138.1"; Scaffold001 rebuild exon 6000584 6000827 . - . gene_id "RvY_02138"; transcript_id "RvY_02138.1"; Scaffold001 rebuild transcript 6001834 6002503 . - . gene_id "RvY_02139"; transcript_id "RvY_02139.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6001834 6002098 . - . gene_id "RvY_02139"; transcript_id "RvY_02139.1"; Scaffold001 rebuild exon 6002157 6002503 . - . gene_id "RvY_02139"; transcript_id "RvY_02139.1"; Scaffold001 rebuild transcript 6002628 6003012 . - . gene_id "RvY_02140"; transcript_id "RvY_02140.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6002628 6002720 . - . gene_id "RvY_02140"; transcript_id "RvY_02140.1"; Scaffold001 rebuild exon 6002827 6003012 . - . gene_id "RvY_02140"; transcript_id "RvY_02140.1"; Scaffold001 rebuild transcript 6003870 6004426 . - . gene_id "RvY_02141"; transcript_id "RvY_02141.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6003870 6003943 . - . gene_id "RvY_02141"; transcript_id "RvY_02141.1"; Scaffold001 rebuild exon 6004018 6004192 . - . gene_id "RvY_02141"; transcript_id "RvY_02141.1"; Scaffold001 rebuild exon 6004301 6004426 . - . gene_id "RvY_02141"; transcript_id "RvY_02141.1"; Scaffold001 rebuild transcript 6005708 6005962 . - . gene_id "RvY_02142"; transcript_id "RvY_02142.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6005708 6005962 . - . gene_id "RvY_02142"; transcript_id "RvY_02142.1"; Scaffold001 rebuild transcript 6006421 6008759 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; gene_name "CTNS"; annotation "putative Cystinosin"; Pfam "[PQ-loop] PQ loop repeat"; CDD "Lysosomal Cystine Transporter."; KO "K12386"; similar_genes "CTNS_BOVIN(e-value:2.1e-32;bit-score:137.0)"; Scaffold001 rebuild exon 6006421 6006638 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6006715 6006832 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6006931 6007101 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6007433 6007552 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6007631 6007730 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6007824 6007964 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6008031 6008219 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6008486 6008561 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild exon 6008639 6008759 . - . gene_id "RvY_02143"; transcript_id "RvY_02143.1"; Scaffold001 rebuild transcript 6009781 6011385 . - . gene_id "RvY_02144"; transcript_id "RvY_02144.1"; gene_name "SARS"; annotation "seryl-tRNA synthetase [EC:6.1.1.11]"; Pfam "[tRNA-synt_2b] tRNA synthetase class II core domain (G, H, P, S and T)"; CDD "Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer."; EC "EC6.1.1.11"; KO "K01875"; Scaffold001 rebuild exon 6009781 6011385 . - . gene_id "RvY_02144"; transcript_id "RvY_02144.1"; Scaffold001 rebuild transcript 6012038 6012665 . + . gene_id "RvY_02145"; transcript_id "RvY_02145.1"; gene_name "RP-L27e"; annotation "60S ribosomal protein L27"; Pfam "[Ribosomal_L27e] Ribosomal L27e protein family"; KO "K02901"; similar_genes "RL27_DANRE(e-value:2.9e-57;bit-score:219.0)"; Scaffold001 rebuild exon 6012038 6012118 . + . gene_id "RvY_02145"; transcript_id "RvY_02145.1"; Scaffold001 rebuild exon 6012200 6012369 . + . gene_id "RvY_02145"; transcript_id "RvY_02145.1"; Scaffold001 rebuild exon 6012506 6012665 . + . gene_id "RvY_02145"; transcript_id "RvY_02145.1"; Scaffold001 rebuild transcript 6013239 6013967 . - . gene_id "RvY_02146"; transcript_id "RvY_02146.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6013239 6013363 . - . gene_id "RvY_02146"; transcript_id "RvY_02146.1"; Scaffold001 rebuild exon 6013566 6013733 . - . gene_id "RvY_02146"; transcript_id "RvY_02146.1"; Scaffold001 rebuild exon 6013787 6013967 . - . gene_id "RvY_02146"; transcript_id "RvY_02146.1"; Scaffold001 rebuild transcript 6014926 6015847 . - . gene_id "RvY_02147"; transcript_id "RvY_02147.1"; gene_name "CTH1"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; CDD "CCCH-type Zn-finger protein [General function prediction only]"; Scaffold001 rebuild exon 6014926 6015110 . - . gene_id "RvY_02147"; transcript_id "RvY_02147.1"; Scaffold001 rebuild exon 6015181 6015847 . - . gene_id "RvY_02147"; transcript_id "RvY_02147.1"; Scaffold001 rebuild transcript 6017324 6019134 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6017324 6017347 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.1"; Scaffold001 rebuild exon 6017448 6017765 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.1"; Scaffold001 rebuild exon 6017843 6018080 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.1"; Scaffold001 rebuild exon 6019103 6019134 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.1"; Scaffold001 rebuild transcript 6017628 6018166 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6017628 6017765 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.2"; Scaffold001 rebuild exon 6017843 6018166 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.2"; Scaffold001 rebuild transcript 6019004 6019363 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6019004 6019363 . + . gene_id "RvY_02148"; transcript_id "RvY_02148.3"; Scaffold001 rebuild transcript 6017735 6017941 . - . gene_id "RvY_02149"; transcript_id "RvY_02149.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6017735 6017941 . - . gene_id "RvY_02149"; transcript_id "RvY_02149.1"; Scaffold001 rebuild transcript 6020313 6021146 . + . gene_id "RvY_02150"; transcript_id "RvY_02150.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6020313 6020518 . + . gene_id "RvY_02150"; transcript_id "RvY_02150.1"; Scaffold001 rebuild exon 6020584 6020901 . + . gene_id "RvY_02150"; transcript_id "RvY_02150.1"; Scaffold001 rebuild exon 6020987 6021146 . + . gene_id "RvY_02150"; transcript_id "RvY_02150.1"; Scaffold001 rebuild transcript 6024450 6025738 . - . gene_id "RvY_02151"; transcript_id "RvY_02151.1"; annotation "hypothetical protein."; Pfam "[IBR]"; Scaffold001 rebuild exon 6024450 6024838 . - . gene_id "RvY_02151"; transcript_id "RvY_02151.1"; Scaffold001 rebuild exon 6025303 6025738 . - . gene_id "RvY_02151"; transcript_id "RvY_02151.1"; Scaffold001 rebuild transcript 6025981 6026210 . - . gene_id "RvY_02152"; transcript_id "RvY_02152.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6025981 6026127 . - . gene_id "RvY_02152"; transcript_id "RvY_02152.1"; Scaffold001 rebuild exon 6026193 6026210 . - . gene_id "RvY_02152"; transcript_id "RvY_02152.1"; Scaffold001 rebuild transcript 6030885 6031864 . + . gene_id "RvY_02153"; transcript_id "RvY_02153.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6030885 6031044 . + . gene_id "RvY_02153"; transcript_id "RvY_02153.1"; Scaffold001 rebuild exon 6031755 6031864 . + . gene_id "RvY_02153"; transcript_id "RvY_02153.1"; Scaffold001 rebuild transcript 6034861 6037411 . + . gene_id "RvY_02154"; transcript_id "RvY_02154.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "PGFRA_CHICK(e-value:3.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 6034861 6035445 . + . gene_id "RvY_02154"; transcript_id "RvY_02154.1"; Scaffold001 rebuild exon 6035527 6036867 . + . gene_id "RvY_02154"; transcript_id "RvY_02154.1"; Scaffold001 rebuild exon 6036930 6037153 . + . gene_id "RvY_02154"; transcript_id "RvY_02154.1"; Scaffold001 rebuild exon 6037246 6037411 . + . gene_id "RvY_02154"; transcript_id "RvY_02154.1"; Scaffold001 rebuild transcript 6039946 6043237 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 6039946 6040015 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6040095 6040183 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6040878 6040965 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6041072 6041210 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6041291 6041490 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6041554 6041811 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6041897 6042241 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6042343 6042491 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6042577 6042724 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6042807 6043054 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild exon 6043139 6043237 . + . gene_id "RvY_02155"; transcript_id "RvY_02155.1"; Scaffold001 rebuild transcript 6048992 6050621 . - . gene_id "RvY_02156"; transcript_id "RvY_02156.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6048992 6049801 . - . gene_id "RvY_02156"; transcript_id "RvY_02156.1"; Scaffold001 rebuild exon 6049883 6050101 . - . gene_id "RvY_02156"; transcript_id "RvY_02156.1"; Scaffold001 rebuild exon 6050229 6050621 . - . gene_id "RvY_02156"; transcript_id "RvY_02156.1"; Scaffold001 rebuild transcript 6050851 6051106 . - . gene_id "RvY_02157"; transcript_id "RvY_02157.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6050851 6050985 . - . gene_id "RvY_02157"; transcript_id "RvY_02157.1"; Scaffold001 rebuild exon 6051038 6051106 . - . gene_id "RvY_02157"; transcript_id "RvY_02157.1"; Scaffold001 rebuild transcript 6055133 6055595 . + . gene_id "RvY_02158"; transcript_id "RvY_02158.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6055133 6055500 . + . gene_id "RvY_02158"; transcript_id "RvY_02158.1"; Scaffold001 rebuild exon 6055571 6055595 . + . gene_id "RvY_02158"; transcript_id "RvY_02158.1"; Scaffold001 rebuild transcript 6056932 6057645 . + . gene_id "RvY_02159"; transcript_id "RvY_02159.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6056932 6056982 . + . gene_id "RvY_02159"; transcript_id "RvY_02159.1"; Scaffold001 rebuild exon 6057047 6057202 . + . gene_id "RvY_02159"; transcript_id "RvY_02159.1"; Scaffold001 rebuild exon 6057424 6057645 . + . gene_id "RvY_02159"; transcript_id "RvY_02159.1"; Scaffold001 rebuild transcript 6059990 6061313 . + . gene_id "RvY_02160"; transcript_id "RvY_02160.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold001 rebuild exon 6059990 6060085 . + . gene_id "RvY_02160"; transcript_id "RvY_02160.1"; Scaffold001 rebuild exon 6060169 6060502 . + . gene_id "RvY_02160"; transcript_id "RvY_02160.1"; Scaffold001 rebuild exon 6060574 6061313 . + . gene_id "RvY_02160"; transcript_id "RvY_02160.1"; Scaffold001 rebuild transcript 6063010 6063609 . - . gene_id "RvY_02161"; transcript_id "RvY_02161.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6063010 6063140 . - . gene_id "RvY_02161"; transcript_id "RvY_02161.1"; Scaffold001 rebuild exon 6063165 6063609 . - . gene_id "RvY_02161"; transcript_id "RvY_02161.1"; Scaffold001 rebuild transcript 6063696 6064037 . - . gene_id "RvY_02162"; transcript_id "RvY_02162.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6063696 6064037 . - . gene_id "RvY_02162"; transcript_id "RvY_02162.1"; Scaffold001 rebuild transcript 6064750 6064920 . + . gene_id "RvY_02163"; transcript_id "RvY_02163.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6064750 6064920 . + . gene_id "RvY_02163"; transcript_id "RvY_02163.1"; Scaffold001 rebuild transcript 6067121 6068239 . + . gene_id "RvY_02164"; transcript_id "RvY_02164.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6067121 6067445 . + . gene_id "RvY_02164"; transcript_id "RvY_02164.1"; Scaffold001 rebuild exon 6067656 6067823 . + . gene_id "RvY_02164"; transcript_id "RvY_02164.1"; Scaffold001 rebuild exon 6068121 6068239 . + . gene_id "RvY_02164"; transcript_id "RvY_02164.1"; Scaffold001 rebuild transcript 6069351 6070127 . + . gene_id "RvY_02165"; transcript_id "RvY_02165.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 6069351 6070127 . + . gene_id "RvY_02165"; transcript_id "RvY_02165.1"; Scaffold001 rebuild transcript 6069351 6069752 . + . gene_id "RvY_02165"; transcript_id "RvY_02165.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 6069351 6069752 . + . gene_id "RvY_02165"; transcript_id "RvY_02165.2"; Scaffold001 rebuild transcript 6070588 6072662 . - . gene_id "RvY_02166"; transcript_id "RvY_02166.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6070588 6070806 . - . gene_id "RvY_02166"; transcript_id "RvY_02166.1"; Scaffold001 rebuild exon 6072645 6072662 . - . gene_id "RvY_02166"; transcript_id "RvY_02166.1"; Scaffold001 rebuild transcript 6073572 6073919 . - . gene_id "RvY_02167"; transcript_id "RvY_02167.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6073572 6073919 . - . gene_id "RvY_02167"; transcript_id "RvY_02167.1"; Scaffold001 rebuild transcript 6074194 6076098 . + . gene_id "RvY_02168"; transcript_id "RvY_02168.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6074194 6074253 . + . gene_id "RvY_02168"; transcript_id "RvY_02168.1"; Scaffold001 rebuild exon 6075823 6076098 . + . gene_id "RvY_02168"; transcript_id "RvY_02168.1"; Scaffold001 rebuild transcript 6081474 6082592 . + . gene_id "RvY_02169"; transcript_id "RvY_02169.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6081474 6082592 . + . gene_id "RvY_02169"; transcript_id "RvY_02169.1"; Scaffold001 rebuild transcript 6083427 6085949 . + . gene_id "RvY_02170"; transcript_id "RvY_02170.1"; annotation "hypothetical protein."; Pfam "[BRICHOS]"; Scaffold001 rebuild exon 6083427 6083513 . + . gene_id "RvY_02170"; transcript_id "RvY_02170.1"; Scaffold001 rebuild exon 6084299 6084496 . + . gene_id "RvY_02170"; transcript_id "RvY_02170.1"; Scaffold001 rebuild exon 6084848 6085237 . + . gene_id "RvY_02170"; transcript_id "RvY_02170.1"; Scaffold001 rebuild exon 6085339 6085449 . + . gene_id "RvY_02170"; transcript_id "RvY_02170.1"; Scaffold001 rebuild exon 6085680 6085949 . + . gene_id "RvY_02170"; transcript_id "RvY_02170.1"; Scaffold001 rebuild transcript 6086616 6088860 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; gene_name "LSC2"; annotation "Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"; Pfam "[ATP-grasp_2] ATP-grasp domain|[ATP-grasp_5] ATP-grasp domain|[Ligase_CoA] CoA-ligase"; CDD "succinyl-CoA synthetase subunit beta; Provisional"; EC "EC6.2.1.4|EC6.2.1.5"; KO "K01900"; similar_genes "SUCB_SCHPO(e-value:4.3e-71;bit-score:265.0)"; Scaffold001 rebuild exon 6086616 6086690 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6086792 6087001 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6087074 6087188 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6087280 6087347 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6087484 6087605 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6087668 6087707 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6087786 6088010 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6088064 6088226 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6088291 6088390 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6088482 6088638 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild exon 6088789 6088860 . - . gene_id "RvY_02171"; transcript_id "RvY_02171.1"; Scaffold001 rebuild transcript 6089602 6090427 . + . gene_id "RvY_02172"; transcript_id "RvY_02172.1"; annotation "(1)putative Putative OPA3-like protein CG13603(2)hypothetical protein."; Pfam "[OPA3] Optic atrophy 3 protein (OPA3)"; similar_genes "(1)OPA32_DROME(e-value:2.7e-32;bit-score:136.0)"; Scaffold001 rebuild exon 6089602 6089743 . + . gene_id "RvY_02172"; transcript_id "RvY_02172.1"; Scaffold001 rebuild exon 6089970 6090427 . + . gene_id "RvY_02172"; transcript_id "RvY_02172.1"; Scaffold001 rebuild transcript 6090424 6090741 . + . gene_id "RvY_02172"; transcript_id "RvY_02172.2"; annotation "(1)putative Putative OPA3-like protein CG13603(2)hypothetical protein."; Pfam "[OPA3] Optic atrophy 3 protein (OPA3)"; similar_genes "(1)OPA32_DROME(e-value:2.7e-32;bit-score:136.0)"; Scaffold001 rebuild exon 6090424 6090741 . + . gene_id "RvY_02172"; transcript_id "RvY_02172.2"; Scaffold001 rebuild transcript 6091008 6091298 . + . gene_id "RvY_02173"; transcript_id "RvY_02173.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6091008 6091298 . + . gene_id "RvY_02173"; transcript_id "RvY_02173.1"; Scaffold001 rebuild transcript 6091480 6091961 . + . gene_id "RvY_02174"; transcript_id "RvY_02174.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6091480 6091800 . + . gene_id "RvY_02174"; transcript_id "RvY_02174.1"; Scaffold001 rebuild exon 6091920 6091961 . + . gene_id "RvY_02174"; transcript_id "RvY_02174.1"; Scaffold001 rebuild transcript 6091978 6092936 . + . gene_id "RvY_02175"; transcript_id "RvY_02175.1"; gene_name "VKORC1"; annotation "vitamin-K-epoxide reductase (warfarin-sensitive) [EC:1.1.4.1]"; Pfam "[VKOR] Vitamin K epoxide reductase family"; CDD "Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases."; EC "EC1.1.4.1"; KO "K05357"; Scaffold001 rebuild exon 6091978 6092174 . + . gene_id "RvY_02175"; transcript_id "RvY_02175.1"; Scaffold001 rebuild exon 6092279 6092388 . + . gene_id "RvY_02175"; transcript_id "RvY_02175.1"; Scaffold001 rebuild exon 6092575 6092936 . + . gene_id "RvY_02175"; transcript_id "RvY_02175.1"; Scaffold001 rebuild transcript 6099079 6100272 . + . gene_id "RvY_02176"; transcript_id "RvY_02176.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6099079 6099216 . + . gene_id "RvY_02176"; transcript_id "RvY_02176.1"; Scaffold001 rebuild exon 6100195 6100272 . + . gene_id "RvY_02176"; transcript_id "RvY_02176.1"; Scaffold001 rebuild transcript 6100604 6102502 . - . gene_id "RvY_02177"; transcript_id "RvY_02177.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 6100604 6100992 . - . gene_id "RvY_02177"; transcript_id "RvY_02177.1"; Scaffold001 rebuild exon 6101067 6101268 . - . gene_id "RvY_02177"; transcript_id "RvY_02177.1"; Scaffold001 rebuild exon 6101431 6101577 . - . gene_id "RvY_02177"; transcript_id "RvY_02177.1"; Scaffold001 rebuild exon 6101665 6102007 . - . gene_id "RvY_02177"; transcript_id "RvY_02177.1"; Scaffold001 rebuild exon 6102252 6102502 . - . gene_id "RvY_02177"; transcript_id "RvY_02177.1"; Scaffold001 rebuild transcript 6102639 6103884 . - . gene_id "RvY_02178"; transcript_id "RvY_02178.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6102639 6102651 . - . gene_id "RvY_02178"; transcript_id "RvY_02178.1"; Scaffold001 rebuild exon 6103253 6103512 . - . gene_id "RvY_02178"; transcript_id "RvY_02178.1"; Scaffold001 rebuild exon 6103522 6103884 . - . gene_id "RvY_02178"; transcript_id "RvY_02178.1"; Scaffold001 rebuild transcript 6109452 6109742 . + . gene_id "RvY_02179"; transcript_id "RvY_02179.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6109452 6109742 . + . gene_id "RvY_02179"; transcript_id "RvY_02179.1"; Scaffold001 rebuild transcript 6110393 6113697 . + . gene_id "RvY_02180"; transcript_id "RvY_02180.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6110393 6110506 . + . gene_id "RvY_02180"; transcript_id "RvY_02180.1"; Scaffold001 rebuild exon 6110843 6111160 . + . gene_id "RvY_02180"; transcript_id "RvY_02180.1"; Scaffold001 rebuild exon 6111614 6111706 . + . gene_id "RvY_02180"; transcript_id "RvY_02180.1"; Scaffold001 rebuild exon 6112345 6112600 . + . gene_id "RvY_02180"; transcript_id "RvY_02180.1"; Scaffold001 rebuild exon 6113567 6113697 . + . gene_id "RvY_02180"; transcript_id "RvY_02180.1"; Scaffold001 rebuild transcript 6116643 6118499 . - . gene_id "RvY_02181"; transcript_id "RvY_02181.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6116643 6116838 . - . gene_id "RvY_02181"; transcript_id "RvY_02181.1"; Scaffold001 rebuild exon 6116947 6117125 . - . gene_id "RvY_02181"; transcript_id "RvY_02181.1"; Scaffold001 rebuild exon 6118470 6118499 . - . gene_id "RvY_02181"; transcript_id "RvY_02181.1"; Scaffold001 rebuild transcript 6121221 6122553 . - . gene_id "RvY_02182"; transcript_id "RvY_02182.1"; annotation "hypothetical protein."; Pfam "[Endonuclea_NS_2] DNA/RNA non-specific endonuclease"; Scaffold001 rebuild exon 6121221 6121734 . - . gene_id "RvY_02182"; transcript_id "RvY_02182.1"; Scaffold001 rebuild exon 6122046 6122334 . - . gene_id "RvY_02182"; transcript_id "RvY_02182.1"; Scaffold001 rebuild exon 6122409 6122553 . - . gene_id "RvY_02182"; transcript_id "RvY_02182.1"; Scaffold001 rebuild transcript 6124957 6126139 . + . gene_id "RvY_02183"; transcript_id "RvY_02183.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6124957 6125068 . + . gene_id "RvY_02183"; transcript_id "RvY_02183.1"; Scaffold001 rebuild exon 6125268 6126139 . + . gene_id "RvY_02183"; transcript_id "RvY_02183.1"; Scaffold001 rebuild transcript 6126376 6128431 . - . gene_id "RvY_02184"; transcript_id "RvY_02184.1"; gene_name "LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold001 rebuild exon 6126376 6126767 . - . gene_id "RvY_02184"; transcript_id "RvY_02184.1"; Scaffold001 rebuild exon 6126839 6127740 . - . gene_id "RvY_02184"; transcript_id "RvY_02184.1"; Scaffold001 rebuild exon 6127911 6128431 . - . gene_id "RvY_02184"; transcript_id "RvY_02184.1"; Scaffold001 rebuild transcript 6129045 6129995 . - . gene_id "RvY_02185"; transcript_id "RvY_02185.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6129045 6129343 . - . gene_id "RvY_02185"; transcript_id "RvY_02185.1"; Scaffold001 rebuild exon 6129443 6129995 . - . gene_id "RvY_02185"; transcript_id "RvY_02185.1"; Scaffold001 rebuild transcript 6129254 6129796 . - . gene_id "RvY_02185"; transcript_id "RvY_02185.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6129254 6129343 . - . gene_id "RvY_02185"; transcript_id "RvY_02185.2"; Scaffold001 rebuild exon 6129443 6129796 . - . gene_id "RvY_02185"; transcript_id "RvY_02185.2"; Scaffold001 rebuild transcript 6131047 6131568 . + . gene_id "RvY_02186"; transcript_id "RvY_02186.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6131047 6131182 . + . gene_id "RvY_02186"; transcript_id "RvY_02186.1"; Scaffold001 rebuild exon 6131528 6131568 . + . gene_id "RvY_02186"; transcript_id "RvY_02186.1"; Scaffold001 rebuild transcript 6133191 6133708 . + . gene_id "RvY_02187"; transcript_id "RvY_02187.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6133191 6133317 . + . gene_id "RvY_02187"; transcript_id "RvY_02187.1"; Scaffold001 rebuild exon 6133424 6133523 . + . gene_id "RvY_02187"; transcript_id "RvY_02187.1"; Scaffold001 rebuild exon 6133663 6133708 . + . gene_id "RvY_02187"; transcript_id "RvY_02187.1"; Scaffold001 rebuild transcript 6134591 6135519 . - . gene_id "RvY_02188"; transcript_id "RvY_02188.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6134591 6135336 . - . gene_id "RvY_02188"; transcript_id "RvY_02188.1"; Scaffold001 rebuild exon 6135411 6135519 . - . gene_id "RvY_02188"; transcript_id "RvY_02188.1"; Scaffold001 rebuild transcript 6136551 6137501 . + . gene_id "RvY_02189"; transcript_id "RvY_02189.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6136551 6137219 . + . gene_id "RvY_02189"; transcript_id "RvY_02189.1"; Scaffold001 rebuild exon 6137298 6137501 . + . gene_id "RvY_02189"; transcript_id "RvY_02189.1"; Scaffold001 rebuild transcript 6138853 6139730 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6138853 6138934 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.1"; Scaffold001 rebuild exon 6139016 6139278 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.1"; Scaffold001 rebuild exon 6139344 6139730 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.1"; Scaffold001 rebuild transcript 6139045 6139730 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6139045 6139117 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.2"; Scaffold001 rebuild exon 6139196 6139278 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.2"; Scaffold001 rebuild exon 6139344 6139730 . + . gene_id "RvY_02190"; transcript_id "RvY_02190.2"; Scaffold001 rebuild transcript 6141782 6142069 . + . gene_id "RvY_02191"; transcript_id "RvY_02191.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6141782 6142069 . + . gene_id "RvY_02191"; transcript_id "RvY_02191.1"; Scaffold001 rebuild transcript 6145557 6145904 . - . gene_id "RvY_02192"; transcript_id "RvY_02192.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6145557 6145904 . - . gene_id "RvY_02192"; transcript_id "RvY_02192.1"; Scaffold001 rebuild transcript 6145435 6145904 . - . gene_id "RvY_02192"; transcript_id "RvY_02192.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6145435 6145438 . - . gene_id "RvY_02192"; transcript_id "RvY_02192.2"; Scaffold001 rebuild exon 6145573 6145904 . - . gene_id "RvY_02192"; transcript_id "RvY_02192.2"; Scaffold001 rebuild transcript 6146173 6146838 . - . gene_id "RvY_02193"; transcript_id "RvY_02193.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6146173 6146387 . - . gene_id "RvY_02193"; transcript_id "RvY_02193.1"; Scaffold001 rebuild exon 6146733 6146838 . - . gene_id "RvY_02193"; transcript_id "RvY_02193.1"; Scaffold001 rebuild transcript 6148175 6150589 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6148175 6148583 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.1"; Scaffold001 rebuild exon 6149074 6149315 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.1"; Scaffold001 rebuild exon 6149380 6149517 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.1"; Scaffold001 rebuild exon 6149624 6150247 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.1"; Scaffold001 rebuild exon 6150317 6150589 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.1"; Scaffold001 rebuild transcript 6149507 6150589 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6149507 6150247 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.2"; Scaffold001 rebuild exon 6150317 6150589 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.2"; Scaffold001 rebuild transcript 6147270 6148217 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6147270 6148217 . - . gene_id "RvY_02194"; transcript_id "RvY_02194.3"; Scaffold001 rebuild transcript 6152125 6152954 . + . gene_id "RvY_02195"; transcript_id "RvY_02195.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6152125 6152253 . + . gene_id "RvY_02195"; transcript_id "RvY_02195.1"; Scaffold001 rebuild exon 6152943 6152954 . + . gene_id "RvY_02195"; transcript_id "RvY_02195.1"; Scaffold001 rebuild transcript 6153850 6154754 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6153850 6154142 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.1"; Scaffold001 rebuild exon 6154514 6154754 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.1"; Scaffold001 rebuild transcript 6154452 6154754 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6154452 6154754 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.2"; Scaffold001 rebuild transcript 6153891 6154549 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6153891 6154145 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.3"; Scaffold001 rebuild exon 6154514 6154549 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.3"; Scaffold001 rebuild transcript 6153891 6154549 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6153891 6154142 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.4"; Scaffold001 rebuild exon 6154514 6154549 . - . gene_id "RvY_02196"; transcript_id "RvY_02196.4"; Scaffold001 rebuild transcript 6156289 6158529 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; gene_name "bkdB"; annotation "putative Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial"; Pfam "[E3_binding] e3 binding domain|[2-oxoacid_dh] 2-oxoacid dehydrogenases acyltransferase (catalytic domain)|[Biotin_lipoyl] Biotin-requiring enzyme"; CDD "dihydrolipoamide acetyltransferase; Reviewed"; EC "EC2.3.1.168"; KO "K09699"; similar_genes "ODB2_HUMAN(e-value:7.8e-45;bit-score:178.0)"; Scaffold001 rebuild exon 6156289 6156348 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6156423 6156600 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6156683 6156767 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6156860 6157053 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6157167 6157409 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6157466 6157761 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6157868 6158137 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild exon 6158284 6158529 . + . gene_id "RvY_02197"; transcript_id "RvY_02197.1"; Scaffold001 rebuild transcript 6162830 6164027 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; gene_name "DCTN5"; annotation "dynactin 5"; Pfam "[Hexapep] Bacterial transferase hexapeptide (six repeats)"; CDD "Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity."; KO "K10427"; Scaffold001 rebuild exon 6162830 6162924 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; Scaffold001 rebuild exon 6163006 6163108 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; Scaffold001 rebuild exon 6163231 6163378 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; Scaffold001 rebuild exon 6163613 6163731 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; Scaffold001 rebuild exon 6163829 6163897 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; Scaffold001 rebuild exon 6163977 6164027 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.1"; Scaffold001 rebuild transcript 6162995 6164027 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.2"; gene_name "DCTN5"; annotation "dynactin 5"; Pfam "[Hexapep] Bacterial transferase hexapeptide (six repeats)"; CDD "Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity."; KO "K10427"; Scaffold001 rebuild exon 6162995 6163108 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.2"; Scaffold001 rebuild exon 6163231 6163378 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.2"; Scaffold001 rebuild exon 6163613 6163731 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.2"; Scaffold001 rebuild exon 6163829 6163897 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.2"; Scaffold001 rebuild exon 6163977 6164027 . - . gene_id "RvY_02198"; transcript_id "RvY_02198.2"; Scaffold001 rebuild transcript 6165361 6165585 . - . gene_id "RvY_02199"; transcript_id "RvY_02199.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6165361 6165585 . - . gene_id "RvY_02199"; transcript_id "RvY_02199.1"; Scaffold001 rebuild transcript 6165658 6167217 . - . gene_id "RvY_02200"; transcript_id "RvY_02200.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6165658 6165755 . - . gene_id "RvY_02200"; transcript_id "RvY_02200.1"; Scaffold001 rebuild exon 6166571 6166867 . - . gene_id "RvY_02200"; transcript_id "RvY_02200.1"; Scaffold001 rebuild exon 6166902 6167045 . - . gene_id "RvY_02200"; transcript_id "RvY_02200.1"; Scaffold001 rebuild exon 6167193 6167217 . - . gene_id "RvY_02200"; transcript_id "RvY_02200.1"; Scaffold001 rebuild transcript 6167272 6167550 . - . gene_id "RvY_02201"; transcript_id "RvY_02201.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6167272 6167550 . - . gene_id "RvY_02201"; transcript_id "RvY_02201.1"; Scaffold001 rebuild transcript 6167873 6168551 . + . gene_id "RvY_02202"; transcript_id "RvY_02202.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6167873 6167977 . + . gene_id "RvY_02202"; transcript_id "RvY_02202.1"; Scaffold001 rebuild exon 6168228 6168477 . + . gene_id "RvY_02202"; transcript_id "RvY_02202.1"; Scaffold001 rebuild exon 6168544 6168551 . + . gene_id "RvY_02202"; transcript_id "RvY_02202.1"; Scaffold001 rebuild transcript 6168675 6169095 . + . gene_id "RvY_02203"; transcript_id "RvY_02203.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6168675 6168770 . + . gene_id "RvY_02203"; transcript_id "RvY_02203.1"; Scaffold001 rebuild exon 6168841 6169002 . + . gene_id "RvY_02203"; transcript_id "RvY_02203.1"; Scaffold001 rebuild exon 6169075 6169095 . + . gene_id "RvY_02203"; transcript_id "RvY_02203.1"; Scaffold001 rebuild transcript 6169558 6172312 . - . gene_id "RvY_02204"; transcript_id "RvY_02204.1"; gene_name "vWA_interalpha_trypsin_inhibitor"; annotation "hypothetical protein."; Pfam "[VWA_3] von Willebrand factor type A domain|[VIT] Vault protein inter-alpha-trypsin domain|[VIT_2] Vault protein inter-alpha-trypsin domain|[VWA] von Willebrand factor type A domain|[VWA_2] von Willebrand factor type A domain"; CDD "vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix."; Scaffold001 rebuild exon 6169558 6170204 . - . gene_id "RvY_02204"; transcript_id "RvY_02204.1"; Scaffold001 rebuild exon 6170282 6171103 . - . gene_id "RvY_02204"; transcript_id "RvY_02204.1"; Scaffold001 rebuild exon 6171209 6171955 . - . gene_id "RvY_02204"; transcript_id "RvY_02204.1"; Scaffold001 rebuild exon 6172024 6172312 . - . gene_id "RvY_02204"; transcript_id "RvY_02204.1"; Scaffold001 rebuild transcript 6172374 6172544 . + . gene_id "RvY_02205"; transcript_id "RvY_02205.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6172374 6172544 . + . gene_id "RvY_02205"; transcript_id "RvY_02205.1"; Scaffold001 rebuild transcript 6173312 6175138 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; gene_name "eIF-2BA"; annotation "putative Translation initiation factor eIF-2B subunit alpha"; Pfam "[IF-2B] Initiation factor 2 subunit family"; CDD "Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative Scaffold001 rebuild exon 6173312 6173384 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild exon 6173453 6173554 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild exon 6173630 6173775 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild exon 6173987 6174103 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild exon 6174183 6174440 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild exon 6174521 6174646 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild exon 6174983 6175138 . + . gene_id "RvY_02206"; transcript_id "RvY_02206.1"; Scaffold001 rebuild transcript 6175488 6176039 . + . gene_id "RvY_02207"; transcript_id "RvY_02207.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6175488 6176039 . + . gene_id "RvY_02207"; transcript_id "RvY_02207.1"; Scaffold001 rebuild transcript 6176252 6176878 . + . gene_id "RvY_02208"; transcript_id "RvY_02208.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6176252 6176878 . + . gene_id "RvY_02208"; transcript_id "RvY_02208.1"; Scaffold001 rebuild transcript 6177031 6177966 . - . gene_id "RvY_02209"; transcript_id "RvY_02209.1"; gene_name "K07095"; annotation "Vacuolar protein sorting-associated protein 29"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[Metallophos_2] Calcineurin-like phosphoesterase superfamily domain"; CDD "Predicted phosphoesterase [General function prediction only]"; EC "EC3.1.3.3"; KO "K07095"; similar_genes "VPS29_DANRE(e-value:1.5e-58;bit-score:224.0)"; Scaffold001 rebuild exon 6177031 6177151 . - . gene_id "RvY_02209"; transcript_id "RvY_02209.1"; Scaffold001 rebuild exon 6177273 6177508 . - . gene_id "RvY_02209"; transcript_id "RvY_02209.1"; Scaffold001 rebuild exon 6177688 6177879 . - . gene_id "RvY_02209"; transcript_id "RvY_02209.1"; Scaffold001 rebuild exon 6177964 6177966 . - . gene_id "RvY_02209"; transcript_id "RvY_02209.1"; Scaffold001 rebuild transcript 6178524 6179066 . - . gene_id "RvY_02210"; transcript_id "RvY_02210.1"; gene_name "EGD1"; annotation "nascent polypeptide-associated complex subunit beta"; Pfam "[NAC]"; KO "K01527"; similar_genes "BT3L4_BOVIN(e-value:8.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 6178524 6179066 . - . gene_id "RvY_02210"; transcript_id "RvY_02210.1"; Scaffold001 rebuild transcript 6179670 6180470 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6179670 6180470 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.1"; Scaffold001 rebuild transcript 6179670 6180470 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6179670 6180298 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.2"; Scaffold001 rebuild exon 6180356 6180470 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.2"; Scaffold001 rebuild transcript 6180046 6180865 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6180046 6180298 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.3"; Scaffold001 rebuild exon 6180356 6180533 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.3"; Scaffold001 rebuild exon 6180615 6180707 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.3"; Scaffold001 rebuild exon 6180778 6180865 . - . gene_id "RvY_02211"; transcript_id "RvY_02211.3"; Scaffold001 rebuild transcript 6181682 6181819 . + . gene_id "RvY_02212"; transcript_id "RvY_02212.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6181682 6181819 . + . gene_id "RvY_02212"; transcript_id "RvY_02212.1"; Scaffold001 rebuild transcript 6182411 6183353 . - . gene_id "RvY_02213"; transcript_id "RvY_02213.1"; gene_name "K00999"; annotation "CDP-diacylglycerol--inositol 3-phosphatidyltransferase [EC:2.7.8.11]"; Pfam "[CDP-OH_P_transf] CDP-alcohol phosphatidyltransferase"; EC "EC2.7.8.11"; KO "K00999"; Scaffold001 rebuild exon 6182411 6182587 . - . gene_id "RvY_02213"; transcript_id "RvY_02213.1"; Scaffold001 rebuild exon 6182820 6183353 . - . gene_id "RvY_02213"; transcript_id "RvY_02213.1"; Scaffold001 rebuild transcript 6187709 6189906 . + . gene_id "RvY_02214"; transcript_id "RvY_02214.1"; gene_name "PRPF4"; annotation "U4/U6 small nuclear ribonucleoprotein Prp4"; Pfam "[WD40] WD domain, G-beta repeat|[PRP4] pre-mRNA processing factor 4 (PRP4) like"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K12662"; similar_genes "PRP4_BOVIN(e-value:5.7e-73;bit-score:271.0)"; Scaffold001 rebuild exon 6187709 6187862 . + . gene_id "RvY_02214"; transcript_id "RvY_02214.1"; Scaffold001 rebuild exon 6187965 6188233 . + . gene_id "RvY_02214"; transcript_id "RvY_02214.1"; Scaffold001 rebuild exon 6188302 6188572 . + . gene_id "RvY_02214"; transcript_id "RvY_02214.1"; Scaffold001 rebuild exon 6188735 6189131 . + . gene_id "RvY_02214"; transcript_id "RvY_02214.1"; Scaffold001 rebuild exon 6189483 6189906 . + . gene_id "RvY_02214"; transcript_id "RvY_02214.1"; Scaffold001 rebuild transcript 6192141 6194649 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; gene_name "amt"; annotation "hypothetical protein."; Pfam "[Ammonium_transp] Ammonium Transporter Family"; CDD "ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf."; similar_genes "MEP2_YEAST(e-value:2.5e-18;bit-score:90.0)"; Scaffold001 rebuild exon 6192141 6192272 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6192351 6192473 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6192541 6192793 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6192894 6193051 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6193115 6193403 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6193941 6194035 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6194107 6194203 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6194269 6194387 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild exon 6194470 6194649 . - . gene_id "RvY_02215"; transcript_id "RvY_02215.1"; Scaffold001 rebuild transcript 6195198 6195386 . - . gene_id "RvY_02216"; transcript_id "RvY_02216.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6195198 6195386 . - . gene_id "RvY_02216"; transcript_id "RvY_02216.1"; Scaffold001 rebuild transcript 6196159 6200474 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; gene_name "COG5210"; annotation "putative Small G protein signaling modulator 3"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain|(1)[RUN]|(1)[SH3_2] Variant SH3 domain|(1)[SH3_1] SH3 domain"; CDD "GTPase-activating protein [General function prediction only]"; similar_genes "(1)SGSM3_HUMAN(e-value:7.5e-39;bit-score:158.0)(2)SGSM3_RAT(e-value:2.3e-29;bit-score:127.0)"; Scaffold001 rebuild exon 6196159 6196384 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6196450 6196586 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6196828 6196879 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6196956 6197068 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6197159 6197353 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6197424 6197558 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6197644 6197760 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6197852 6197930 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6198032 6198177 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6198242 6198334 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6198424 6198555 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6198644 6198814 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6198946 6199206 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6199294 6199446 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6199507 6199577 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6199703 6199837 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6199924 6200046 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild exon 6200339 6200474 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.1"; Scaffold001 rebuild transcript 6196159 6199102 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; gene_name "COG5210"; annotation "putative Small G protein signaling modulator 3"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain|(1)[RUN]|(1)[SH3_2] Variant SH3 domain|(1)[SH3_1] SH3 domain"; CDD "GTPase-activating protein [General function prediction only]"; similar_genes "(1)SGSM3_HUMAN(e-value:7.5e-39;bit-score:158.0)(2)SGSM3_RAT(e-value:2.3e-29;bit-score:127.0)"; Scaffold001 rebuild exon 6196159 6196384 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6196450 6196586 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6196828 6196879 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6196956 6197068 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6197159 6197353 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6197424 6197558 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6197644 6197760 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6197852 6197930 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6198032 6198177 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6198242 6198334 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6198424 6198555 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild exon 6198644 6199102 . + . gene_id "RvY_02217"; transcript_id "RvY_02217.2"; Scaffold001 rebuild transcript 6201270 6201847 . - . gene_id "RvY_02218"; transcript_id "RvY_02218.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6201270 6201752 . - . gene_id "RvY_02218"; transcript_id "RvY_02218.1"; Scaffold001 rebuild exon 6201821 6201847 . - . gene_id "RvY_02218"; transcript_id "RvY_02218.1"; Scaffold001 rebuild transcript 6203280 6203609 . + . gene_id "RvY_02219"; transcript_id "RvY_02219.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6203280 6203609 . + . gene_id "RvY_02219"; transcript_id "RvY_02219.1"; Scaffold001 rebuild transcript 6203944 6204306 . + . gene_id "RvY_02220"; transcript_id "RvY_02220.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6203944 6204306 . + . gene_id "RvY_02220"; transcript_id "RvY_02220.1"; Scaffold001 rebuild transcript 6205122 6205478 . + . gene_id "RvY_02221"; transcript_id "RvY_02221.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6205122 6205478 . + . gene_id "RvY_02221"; transcript_id "RvY_02221.1"; Scaffold001 rebuild transcript 6213277 6213726 . + . gene_id "RvY_02222"; transcript_id "RvY_02222.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6213277 6213726 . + . gene_id "RvY_02222"; transcript_id "RvY_02222.1"; Scaffold001 rebuild transcript 6216068 6218019 . + . gene_id "RvY_02223"; transcript_id "RvY_02223.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "GTR7_RAT(e-value:1.5e-09;bit-score:61.0)"; Scaffold001 rebuild exon 6216068 6216690 . + . gene_id "RvY_02223"; transcript_id "RvY_02223.1"; Scaffold001 rebuild exon 6216783 6217231 . + . gene_id "RvY_02223"; transcript_id "RvY_02223.1"; Scaffold001 rebuild exon 6217529 6218019 . + . gene_id "RvY_02223"; transcript_id "RvY_02223.1"; Scaffold001 rebuild transcript 6217436 6217859 . - . gene_id "RvY_02224"; transcript_id "RvY_02224.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6217436 6217542 . - . gene_id "RvY_02224"; transcript_id "RvY_02224.1"; Scaffold001 rebuild exon 6217559 6217859 . - . gene_id "RvY_02224"; transcript_id "RvY_02224.1"; Scaffold001 rebuild transcript 6219950 6221212 . + . gene_id "RvY_02225"; transcript_id "RvY_02225.1"; gene_name "MGAT3"; annotation "beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.144]"; Pfam "[Glyco_transf_17] Glycosyltransferase family 17"; EC "EC2.4.1.144"; KO "K00737"; Scaffold001 rebuild exon 6219950 6221212 . + . gene_id "RvY_02225"; transcript_id "RvY_02225.1"; Scaffold001 rebuild transcript 6219950 6221156 . + . gene_id "RvY_02225"; transcript_id "RvY_02225.2"; gene_name "MGAT3"; annotation "beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.144]"; Pfam "[Glyco_transf_17] Glycosyltransferase family 17"; EC "EC2.4.1.144"; KO "K00737"; Scaffold001 rebuild exon 6219950 6220957 . + . gene_id "RvY_02225"; transcript_id "RvY_02225.2"; Scaffold001 rebuild exon 6221016 6221156 . + . gene_id "RvY_02225"; transcript_id "RvY_02225.2"; Scaffold001 rebuild transcript 6222418 6225777 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; gene_name "DNAJC2"; annotation "DnaJ homolog subfamily C member 2"; Pfam "[Myb_DNA-binding] Myb-like DNA-binding domain|[Myb_DNA-bind_6] Myb-like DNA-binding domain|[DnaJ]"; CDD "Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]"; KO "K09522"; Scaffold001 rebuild exon 6222418 6222477 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6222741 6222919 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6222995 6223117 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6223189 6223651 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6223951 6224265 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6224339 6224740 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6224993 6225112 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6225215 6225291 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6225521 6225593 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild exon 6225658 6225777 . - . gene_id "RvY_02226"; transcript_id "RvY_02226.1"; Scaffold001 rebuild transcript 6225967 6226143 . - . gene_id "RvY_02227"; transcript_id "RvY_02227.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6225967 6226143 . - . gene_id "RvY_02227"; transcript_id "RvY_02227.1"; Scaffold001 rebuild transcript 6226583 6229226 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; gene_name "serC"; annotation "putative Phosphoserine aminotransferase"; Pfam "[Aminotran_5] Aminotransferase class-V"; CDD "Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is Scaffold001 rebuild exon 6226583 6226690 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild exon 6227374 6227434 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild exon 6227816 6228082 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild exon 6228294 6228469 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild exon 6228534 6228703 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild exon 6228767 6228895 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild exon 6228971 6229226 . + . gene_id "RvY_02228"; transcript_id "RvY_02228.1"; Scaffold001 rebuild transcript 6230244 6230567 . + . gene_id "RvY_02229"; transcript_id "RvY_02229.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6230244 6230413 . + . gene_id "RvY_02229"; transcript_id "RvY_02229.1"; Scaffold001 rebuild exon 6230477 6230567 . + . gene_id "RvY_02229"; transcript_id "RvY_02229.1"; Scaffold001 rebuild transcript 6232282 6241006 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; gene_name "(1)NLGN"; annotation "putative Neuroligin-4, X-linked"; Pfam "[COesterase] Carboxylesterase family"; KO "(1)K07378"; similar_genes "NLGNX_HUMAN(e-value:1.4e-33;bit-score:141.0)"; Scaffold001 rebuild exon 6232282 6232732 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; Scaffold001 rebuild exon 6237190 6237333 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; Scaffold001 rebuild exon 6238171 6238236 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; Scaffold001 rebuild exon 6238470 6238794 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; Scaffold001 rebuild exon 6239025 6239639 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; Scaffold001 rebuild exon 6239923 6241006 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.1"; Scaffold001 rebuild transcript 6232282 6239676 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.2"; gene_name "(1)NLGN"; annotation "putative Neuroligin-4, X-linked"; Pfam "[COesterase] Carboxylesterase family"; KO "(1)K07378"; similar_genes "NLGNX_HUMAN(e-value:1.4e-33;bit-score:141.0)"; Scaffold001 rebuild exon 6232282 6232732 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.2"; Scaffold001 rebuild exon 6237190 6237333 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.2"; Scaffold001 rebuild exon 6238171 6238236 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.2"; Scaffold001 rebuild exon 6238470 6238794 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.2"; Scaffold001 rebuild exon 6239025 6239676 . + . gene_id "RvY_02230"; transcript_id "RvY_02230.2"; Scaffold001 rebuild transcript 6235540 6235869 . - . gene_id "RvY_02231"; transcript_id "RvY_02231.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6235540 6235869 . - . gene_id "RvY_02231"; transcript_id "RvY_02231.1"; Scaffold001 rebuild transcript 6241710 6242042 . + . gene_id "RvY_02232"; transcript_id "RvY_02232.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_IS630] Transposase"; Scaffold001 rebuild exon 6241710 6242042 . + . gene_id "RvY_02232"; transcript_id "RvY_02232.1"; Scaffold001 rebuild transcript 6243398 6244483 . + . gene_id "RvY_02233"; transcript_id "RvY_02233.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 6243398 6244483 . + . gene_id "RvY_02233"; transcript_id "RvY_02233.1"; Scaffold001 rebuild transcript 6246912 6247466 . + . gene_id "RvY_02234"; transcript_id "RvY_02234.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6246912 6247466 . + . gene_id "RvY_02234"; transcript_id "RvY_02234.1"; Scaffold001 rebuild transcript 6248105 6248293 . - . gene_id "RvY_02235"; transcript_id "RvY_02235.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6248105 6248293 . - . gene_id "RvY_02235"; transcript_id "RvY_02235.1"; Scaffold001 rebuild transcript 6251185 6253967 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; gene_name "SrmB"; annotation "putative Probable ATP-dependent RNA helicase DDX56"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K14810"; similar_genes "DDX56_HUMAN(e-value:2.7e-32;bit-score:136.0)"; Scaffold001 rebuild exon 6251185 6251250 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6251330 6251575 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6251777 6251850 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6251931 6252192 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6252598 6253067 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6253232 6253460 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6253525 6253824 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild exon 6253887 6253967 . + . gene_id "RvY_02236"; transcript_id "RvY_02236.1"; Scaffold001 rebuild transcript 6255631 6256667 . + . gene_id "RvY_02237"; transcript_id "RvY_02237.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6255631 6255904 . + . gene_id "RvY_02237"; transcript_id "RvY_02237.1"; Scaffold001 rebuild exon 6256102 6256667 . + . gene_id "RvY_02237"; transcript_id "RvY_02237.1"; Scaffold001 rebuild transcript 6257595 6257852 . + . gene_id "RvY_02238"; transcript_id "RvY_02238.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6257595 6257852 . + . gene_id "RvY_02238"; transcript_id "RvY_02238.1"; Scaffold001 rebuild transcript 6258140 6258376 . + . gene_id "RvY_02239"; transcript_id "RvY_02239.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6258140 6258376 . + . gene_id "RvY_02239"; transcript_id "RvY_02239.1"; Scaffold001 rebuild transcript 6259432 6264106 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold001 rebuild exon 6259432 6259516 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6259573 6259721 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6259786 6260184 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6260262 6260427 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6260502 6260686 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6260754 6261054 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6261111 6261301 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6261360 6261416 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6261494 6261760 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6261830 6261891 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6261969 6262021 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6262097 6262434 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6262690 6263106 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6263182 6263318 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6263433 6263667 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild exon 6263945 6264106 . - . gene_id "RvY_02240"; transcript_id "RvY_02240.1"; Scaffold001 rebuild transcript 6264679 6267406 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)|[GPS] Latrophilin/CL-1-like GPS domain"; similar_genes "(1)GP133_BOVIN(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 6264679 6265273 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6265352 6265442 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6265541 6265812 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6265907 6266031 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6266099 6266196 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6266312 6266823 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6266889 6266980 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild exon 6267170 6267406 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.1"; Scaffold001 rebuild transcript 6265348 6267406 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)|[GPS] Latrophilin/CL-1-like GPS domain"; similar_genes "(1)GP133_BOVIN(e-value:3.1e-12;bit-score:70.0)"; Scaffold001 rebuild exon 6265348 6265442 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild exon 6265541 6265812 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild exon 6265907 6266031 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild exon 6266099 6266196 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild exon 6266312 6266823 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild exon 6266889 6266980 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild exon 6267170 6267406 . - . gene_id "RvY_02241"; transcript_id "RvY_02241.2"; Scaffold001 rebuild transcript 6264737 6265266 . + . gene_id "RvY_02242"; transcript_id "RvY_02242.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6264737 6264938 . + . gene_id "RvY_02242"; transcript_id "RvY_02242.1"; Scaffold001 rebuild exon 6264962 6265266 . + . gene_id "RvY_02242"; transcript_id "RvY_02242.1"; Scaffold001 rebuild transcript 6265600 6265806 . + . gene_id "RvY_02243"; transcript_id "RvY_02243.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6265600 6265806 . + . gene_id "RvY_02243"; transcript_id "RvY_02243.1"; Scaffold001 rebuild transcript 6269110 6269806 . + . gene_id "RvY_02244"; transcript_id "RvY_02244.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6269110 6269161 . + . gene_id "RvY_02244"; transcript_id "RvY_02244.1"; Scaffold001 rebuild exon 6269267 6269445 . + . gene_id "RvY_02244"; transcript_id "RvY_02244.1"; Scaffold001 rebuild exon 6269528 6269806 . + . gene_id "RvY_02244"; transcript_id "RvY_02244.1"; Scaffold001 rebuild transcript 6272304 6273268 . - . gene_id "RvY_02245"; transcript_id "RvY_02245.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6272304 6272377 . - . gene_id "RvY_02245"; transcript_id "RvY_02245.1"; Scaffold001 rebuild exon 6272980 6273268 . - . gene_id "RvY_02245"; transcript_id "RvY_02245.1"; Scaffold001 rebuild transcript 6271179 6273268 . - . gene_id "RvY_02245"; transcript_id "RvY_02245.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6271179 6271186 . - . gene_id "RvY_02245"; transcript_id "RvY_02245.2"; Scaffold001 rebuild exon 6272980 6273268 . - . gene_id "RvY_02245"; transcript_id "RvY_02245.2"; Scaffold001 rebuild transcript 6273863 6274237 . + . gene_id "RvY_02246"; transcript_id "RvY_02246.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6273863 6274011 . + . gene_id "RvY_02246"; transcript_id "RvY_02246.1"; Scaffold001 rebuild exon 6274087 6274237 . + . gene_id "RvY_02246"; transcript_id "RvY_02246.1"; Scaffold001 rebuild transcript 6274361 6274991 . + . gene_id "RvY_02247"; transcript_id "RvY_02247.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6274361 6274836 . + . gene_id "RvY_02247"; transcript_id "RvY_02247.1"; Scaffold001 rebuild exon 6274907 6274991 . + . gene_id "RvY_02247"; transcript_id "RvY_02247.1"; Scaffold001 rebuild transcript 6275459 6277033 . + . gene_id "RvY_02248"; transcript_id "RvY_02248.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; KO "K13616"; Scaffold001 rebuild exon 6275459 6275656 . + . gene_id "RvY_02248"; transcript_id "RvY_02248.1"; Scaffold001 rebuild exon 6275767 6276001 . + . gene_id "RvY_02248"; transcript_id "RvY_02248.1"; Scaffold001 rebuild exon 6276195 6277033 . + . gene_id "RvY_02248"; transcript_id "RvY_02248.1"; Scaffold001 rebuild transcript 6277346 6278960 . + . gene_id "RvY_02249"; transcript_id "RvY_02249.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; KO "K13616"; Scaffold001 rebuild exon 6277346 6277630 . + . gene_id "RvY_02249"; transcript_id "RvY_02249.1"; Scaffold001 rebuild exon 6277698 6277944 . + . gene_id "RvY_02249"; transcript_id "RvY_02249.1"; Scaffold001 rebuild exon 6278158 6278960 . + . gene_id "RvY_02249"; transcript_id "RvY_02249.1"; Scaffold001 rebuild transcript 6279446 6279812 . - . gene_id "RvY_02250"; transcript_id "RvY_02250.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6279446 6279476 . - . gene_id "RvY_02250"; transcript_id "RvY_02250.1"; Scaffold001 rebuild exon 6279574 6279812 . - . gene_id "RvY_02250"; transcript_id "RvY_02250.1"; Scaffold001 rebuild transcript 6281817 6282605 . + . gene_id "RvY_02251"; transcript_id "RvY_02251.1"; annotation "hypothetical protein."; Pfam "[MFS_1_like] MFS_1 like family"; Scaffold001 rebuild exon 6281817 6282605 . + . gene_id "RvY_02251"; transcript_id "RvY_02251.1"; Scaffold001 rebuild transcript 6282940 6283152 . + . gene_id "RvY_02252"; transcript_id "RvY_02252.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6282940 6283014 . + . gene_id "RvY_02252"; transcript_id "RvY_02252.1"; Scaffold001 rebuild exon 6283036 6283152 . + . gene_id "RvY_02252"; transcript_id "RvY_02252.1"; Scaffold001 rebuild transcript 6283490 6285298 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.1"; gene_name "(1)AmtB"; annotation "hypothetical protein."; CDD "(1)Ammonia permease [Inorganic ion transport and metabolism]"; Scaffold001 rebuild exon 6283490 6283530 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.1"; Scaffold001 rebuild exon 6283782 6283914 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.1"; Scaffold001 rebuild exon 6283993 6284115 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.1"; Scaffold001 rebuild exon 6285233 6285298 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.1"; Scaffold001 rebuild transcript 6283600 6283899 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.2"; gene_name "(1)AmtB"; annotation "hypothetical protein."; CDD "(1)Ammonia permease [Inorganic ion transport and metabolism]"; Scaffold001 rebuild exon 6283600 6283899 . - . gene_id "RvY_02253"; transcript_id "RvY_02253.2"; Scaffold001 rebuild transcript 6290802 6291029 . + . gene_id "RvY_02254"; transcript_id "RvY_02254.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6290802 6291029 . + . gene_id "RvY_02254"; transcript_id "RvY_02254.1"; Scaffold001 rebuild transcript 6291301 6293569 . + . gene_id "RvY_02255"; transcript_id "RvY_02255.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6291301 6291352 . + . gene_id "RvY_02255"; transcript_id "RvY_02255.1"; Scaffold001 rebuild exon 6292097 6292285 . + . gene_id "RvY_02255"; transcript_id "RvY_02255.1"; Scaffold001 rebuild exon 6292627 6292793 . + . gene_id "RvY_02255"; transcript_id "RvY_02255.1"; Scaffold001 rebuild exon 6293489 6293569 . + . gene_id "RvY_02255"; transcript_id "RvY_02255.1"; Scaffold001 rebuild transcript 6294594 6295867 . - . gene_id "RvY_02256"; transcript_id "RvY_02256.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6294594 6294984 . - . gene_id "RvY_02256"; transcript_id "RvY_02256.1"; Scaffold001 rebuild exon 6295252 6295379 . - . gene_id "RvY_02256"; transcript_id "RvY_02256.1"; Scaffold001 rebuild exon 6295763 6295867 . - . gene_id "RvY_02256"; transcript_id "RvY_02256.1"; Scaffold001 rebuild transcript 6299577 6301871 . + . gene_id "RvY_02257"; transcript_id "RvY_02257.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6299577 6299607 . + . gene_id "RvY_02257"; transcript_id "RvY_02257.1"; Scaffold001 rebuild exon 6299862 6300659 . + . gene_id "RvY_02257"; transcript_id "RvY_02257.1"; Scaffold001 rebuild exon 6301094 6301245 . + . gene_id "RvY_02257"; transcript_id "RvY_02257.1"; Scaffold001 rebuild exon 6301731 6301871 . + . gene_id "RvY_02257"; transcript_id "RvY_02257.1"; Scaffold001 rebuild transcript 6302722 6304371 . + . gene_id "RvY_02258"; transcript_id "RvY_02258.1"; annotation "hypothetical protein."; Pfam "[DUF2424]|[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; KO "K13616"; Scaffold001 rebuild exon 6302722 6302904 . + . gene_id "RvY_02258"; transcript_id "RvY_02258.1"; Scaffold001 rebuild exon 6303044 6303281 . + . gene_id "RvY_02258"; transcript_id "RvY_02258.1"; Scaffold001 rebuild exon 6303563 6304371 . + . gene_id "RvY_02258"; transcript_id "RvY_02258.1"; Scaffold001 rebuild transcript 6304765 6305157 . - . gene_id "RvY_02259"; transcript_id "RvY_02259.1"; gene_name "rim_protein"; annotation "hypothetical protein."; CDD "retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease."; similar_genes "ABC8B_MOUSE(e-value:2.6e-07;bit-score:53.0)"; Scaffold001 rebuild exon 6304765 6305157 . - . gene_id "RvY_02259"; transcript_id "RvY_02259.1"; Scaffold001 rebuild transcript 6305210 6307456 . + . gene_id "RvY_02260"; transcript_id "RvY_02260.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6305210 6305323 . + . gene_id "RvY_02260"; transcript_id "RvY_02260.1"; Scaffold001 rebuild exon 6306548 6306866 . + . gene_id "RvY_02260"; transcript_id "RvY_02260.1"; Scaffold001 rebuild exon 6306908 6307057 . + . gene_id "RvY_02260"; transcript_id "RvY_02260.1"; Scaffold001 rebuild exon 6307155 6307456 . + . gene_id "RvY_02260"; transcript_id "RvY_02260.1"; Scaffold001 rebuild transcript 6307556 6308029 . - . gene_id "RvY_02261"; transcript_id "RvY_02261.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6307556 6308029 . - . gene_id "RvY_02261"; transcript_id "RvY_02261.1"; Scaffold001 rebuild transcript 6314419 6314592 . + . gene_id "RvY_02262"; transcript_id "RvY_02262.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6314419 6314592 . + . gene_id "RvY_02262"; transcript_id "RvY_02262.1"; Scaffold001 rebuild transcript 6315007 6316805 . - . gene_id "RvY_02263"; transcript_id "RvY_02263.1"; gene_name "HXT"; annotation "MFS transporter, SP family, sugar:H+ symporter"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; KO "K08139"; similar_genes "RCO3_NEUCR(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 6315007 6315177 . - . gene_id "RvY_02263"; transcript_id "RvY_02263.1"; Scaffold001 rebuild exon 6315246 6315284 . - . gene_id "RvY_02263"; transcript_id "RvY_02263.1"; Scaffold001 rebuild exon 6315360 6315573 . - . gene_id "RvY_02263"; transcript_id "RvY_02263.1"; Scaffold001 rebuild exon 6315664 6316641 . - . gene_id "RvY_02263"; transcript_id "RvY_02263.1"; Scaffold001 rebuild exon 6316723 6316805 . - . gene_id "RvY_02263"; transcript_id "RvY_02263.1"; Scaffold001 rebuild transcript 6317688 6321636 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold001 rebuild exon 6317688 6317933 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6318176 6318575 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6318930 6319282 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6319543 6319653 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6319725 6319870 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6319933 6320229 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6320287 6320647 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild exon 6321436 6321636 . - . gene_id "RvY_02264"; transcript_id "RvY_02264.1"; Scaffold001 rebuild transcript 6322268 6324654 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; gene_name "SIK1"; annotation "Uncharacterized NOP5 family protein K07C5.4"; Pfam "[NOP5NT] NOP5NT (NUC127) domain|[NOSIC] NOSIC (NUC001) domain|[Nop] Putative snoRNA binding domain"; CDD "Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]"; KO "K14564"; similar_genes "YZVL_CAEEL(e-value:7.4e-73;bit-score:271.0)"; Scaffold001 rebuild exon 6322268 6322270 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild exon 6322338 6322542 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild exon 6322609 6322776 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild exon 6322986 6323524 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild exon 6323656 6323905 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild exon 6323995 6324116 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild exon 6324445 6324654 . + . gene_id "RvY_02265"; transcript_id "RvY_02265.1"; Scaffold001 rebuild transcript 6324459 6325045 . - . gene_id "RvY_02266"; transcript_id "RvY_02266.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6324459 6324924 . - . gene_id "RvY_02266"; transcript_id "RvY_02266.1"; Scaffold001 rebuild exon 6325041 6325045 . - . gene_id "RvY_02266"; transcript_id "RvY_02266.1"; Scaffold001 rebuild transcript 6325051 6326282 . - . gene_id "RvY_02267"; transcript_id "RvY_02267.1"; annotation "hypothetical protein."; Pfam "[Vma12] Endoplasmic reticulum-based factor for assembly of V-ATPase"; Scaffold001 rebuild exon 6325051 6325112 . - . gene_id "RvY_02267"; transcript_id "RvY_02267.1"; Scaffold001 rebuild exon 6325210 6325422 . - . gene_id "RvY_02267"; transcript_id "RvY_02267.1"; Scaffold001 rebuild exon 6325543 6325669 . - . gene_id "RvY_02267"; transcript_id "RvY_02267.1"; Scaffold001 rebuild exon 6325872 6326173 . - . gene_id "RvY_02267"; transcript_id "RvY_02267.1"; Scaffold001 rebuild exon 6326234 6326282 . - . gene_id "RvY_02267"; transcript_id "RvY_02267.1"; Scaffold001 rebuild transcript 6327601 6328189 . - . gene_id "RvY_02268"; transcript_id "RvY_02268.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6327601 6328044 . - . gene_id "RvY_02268"; transcript_id "RvY_02268.1"; Scaffold001 rebuild exon 6328109 6328189 . - . gene_id "RvY_02268"; transcript_id "RvY_02268.1"; Scaffold001 rebuild transcript 6331938 6332135 . - . gene_id "RvY_02269"; transcript_id "RvY_02269.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6331938 6332135 . - . gene_id "RvY_02269"; transcript_id "RvY_02269.1"; Scaffold001 rebuild transcript 6333192 6333869 . + . gene_id "RvY_02270"; transcript_id "RvY_02270.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6333192 6333248 . + . gene_id "RvY_02270"; transcript_id "RvY_02270.1"; Scaffold001 rebuild exon 6333313 6333670 . + . gene_id "RvY_02270"; transcript_id "RvY_02270.1"; Scaffold001 rebuild exon 6333739 6333869 . + . gene_id "RvY_02270"; transcript_id "RvY_02270.1"; Scaffold001 rebuild transcript 6334144 6339288 . + . gene_id "RvY_02271"; transcript_id "RvY_02271.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6334144 6334855 . + . gene_id "RvY_02271"; transcript_id "RvY_02271.1"; Scaffold001 rebuild exon 6335038 6335391 . + . gene_id "RvY_02271"; transcript_id "RvY_02271.1"; Scaffold001 rebuild exon 6335487 6338720 . + . gene_id "RvY_02271"; transcript_id "RvY_02271.1"; Scaffold001 rebuild exon 6338804 6339288 . + . gene_id "RvY_02271"; transcript_id "RvY_02271.1"; Scaffold001 rebuild transcript 6339789 6340716 . - . gene_id "RvY_02272"; transcript_id "RvY_02272.1"; gene_name "RRP41"; annotation "exosome complex component RRP41"; Pfam "[RNase_PH] 3' exoribonuclease family, domain 1"; CDD "RNase PH [Translation, ribosomal structure and biogenesis]"; EC "EC3.1.13.-"; KO "K11600"; similar_genes "ECX1_THEVO(e-value:7.8e-09;bit-score:58.0)"; Scaffold001 rebuild exon 6339789 6339988 . - . gene_id "RvY_02272"; transcript_id "RvY_02272.1"; Scaffold001 rebuild exon 6340094 6340472 . - . gene_id "RvY_02272"; transcript_id "RvY_02272.1"; Scaffold001 rebuild exon 6340549 6340716 . - . gene_id "RvY_02272"; transcript_id "RvY_02272.1"; Scaffold001 rebuild transcript 6341252 6341497 . - . gene_id "RvY_02273"; transcript_id "RvY_02273.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6341252 6341497 . - . gene_id "RvY_02273"; transcript_id "RvY_02273.1"; Scaffold001 rebuild transcript 6341627 6341953 . - . gene_id "RvY_02274"; transcript_id "RvY_02274.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6341627 6341953 . - . gene_id "RvY_02274"; transcript_id "RvY_02274.1"; Scaffold001 rebuild transcript 6342199 6343414 . + . gene_id "RvY_02275"; transcript_id "RvY_02275.1"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold001 rebuild exon 6342199 6342600 . + . gene_id "RvY_02275"; transcript_id "RvY_02275.1"; Scaffold001 rebuild exon 6343049 6343414 . + . gene_id "RvY_02275"; transcript_id "RvY_02275.1"; Scaffold001 rebuild transcript 6343115 6343423 . - . gene_id "RvY_02276"; transcript_id "RvY_02276.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6343115 6343423 . - . gene_id "RvY_02276"; transcript_id "RvY_02276.1"; Scaffold001 rebuild transcript 6344043 6344456 . + . gene_id "RvY_02277"; transcript_id "RvY_02277.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6344043 6344456 . + . gene_id "RvY_02277"; transcript_id "RvY_02277.1"; Scaffold001 rebuild transcript 6344292 6344573 . - . gene_id "RvY_02278"; transcript_id "RvY_02278.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6344292 6344573 . - . gene_id "RvY_02278"; transcript_id "RvY_02278.1"; Scaffold001 rebuild transcript 6345751 6347379 . - . gene_id "RvY_02279"; transcript_id "RvY_02279.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6345751 6346108 . - . gene_id "RvY_02279"; transcript_id "RvY_02279.1"; Scaffold001 rebuild exon 6346354 6346587 . - . gene_id "RvY_02279"; transcript_id "RvY_02279.1"; Scaffold001 rebuild exon 6346667 6346816 . - . gene_id "RvY_02279"; transcript_id "RvY_02279.1"; Scaffold001 rebuild exon 6346910 6347379 . - . gene_id "RvY_02279"; transcript_id "RvY_02279.1"; Scaffold001 rebuild transcript 6348240 6348479 . + . gene_id "RvY_02280"; transcript_id "RvY_02280.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6348240 6348479 . + . gene_id "RvY_02280"; transcript_id "RvY_02280.1"; Scaffold001 rebuild transcript 6349135 6352120 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; annotation "Syntaxin-binding protein 1"; Pfam "[Sec1] Sec1 family"; KO "K15292"; similar_genes "STXB1_CHICK(e-value:2.7e-117;bit-score:419.0)"; Scaffold001 rebuild exon 6349135 6349196 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6349279 6349436 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6349519 6349724 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6349981 6350229 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6350436 6350643 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6350932 6351170 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6351241 6351474 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6351534 6351793 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6351894 6352025 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild exon 6352093 6352120 . - . gene_id "RvY_02281"; transcript_id "RvY_02281.1"; Scaffold001 rebuild transcript 6352598 6353020 . - . gene_id "RvY_02282"; transcript_id "RvY_02282.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6352598 6353020 . - . gene_id "RvY_02282"; transcript_id "RvY_02282.1"; Scaffold001 rebuild transcript 6353310 6356992 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; gene_name "RARY"; annotation "heterogeneous nuclear ribonucleoprotein C-like 2"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K12895"; similar_genes "GRP1_HORVU(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 6353310 6353544 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild exon 6354075 6354182 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild exon 6354300 6354450 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild exon 6354798 6354926 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild exon 6355020 6355303 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild exon 6355585 6355821 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild exon 6355914 6356992 . + . gene_id "RvY_02283"; transcript_id "RvY_02283.1"; Scaffold001 rebuild transcript 6358410 6358733 . + . gene_id "RvY_02284"; transcript_id "RvY_02284.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6358410 6358733 . + . gene_id "RvY_02284"; transcript_id "RvY_02284.1"; Scaffold001 rebuild transcript 6360625 6362317 . - . gene_id "RvY_02285"; transcript_id "RvY_02285.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6360625 6360765 . - . gene_id "RvY_02285"; transcript_id "RvY_02285.1"; Scaffold001 rebuild exon 6362201 6362317 . - . gene_id "RvY_02285"; transcript_id "RvY_02285.1"; Scaffold001 rebuild transcript 6366809 6368517 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; gene_name "K01183"; annotation "chitinase [EC:3.2.1.14]"; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold001 rebuild exon 6366809 6366937 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild exon 6367043 6367354 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild exon 6367435 6367555 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild exon 6367633 6367748 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild exon 6367817 6368139 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild exon 6368215 6368376 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild exon 6368436 6368517 . - . gene_id "RvY_02286"; transcript_id "RvY_02286.1"; Scaffold001 rebuild transcript 6369031 6373262 . + . gene_id "RvY_02287"; transcript_id "RvY_02287.1"; annotation "hypothetical protein."; Pfam "[EDR1] Ethylene-responsive protein kinase Le-CTR1"; Scaffold001 rebuild exon 6369031 6369631 . + . gene_id "RvY_02287"; transcript_id "RvY_02287.1"; Scaffold001 rebuild exon 6369748 6370729 . + . gene_id "RvY_02287"; transcript_id "RvY_02287.1"; Scaffold001 rebuild exon 6370953 6371978 . + . gene_id "RvY_02287"; transcript_id "RvY_02287.1"; Scaffold001 rebuild exon 6372047 6373262 . + . gene_id "RvY_02287"; transcript_id "RvY_02287.1"; Scaffold001 rebuild transcript 6373268 6373942 . - . gene_id "RvY_02288"; transcript_id "RvY_02288.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6373268 6373417 . - . gene_id "RvY_02288"; transcript_id "RvY_02288.1"; Scaffold001 rebuild exon 6373628 6373942 . - . gene_id "RvY_02288"; transcript_id "RvY_02288.1"; Scaffold001 rebuild transcript 6376083 6377711 . - . gene_id "RvY_02289"; transcript_id "RvY_02289.1"; annotation "hypothetical protein."; similar_genes "MUC1_XENLA(e-value:1.7e-06;bit-score:51.0)"; Scaffold001 rebuild exon 6376083 6376816 . - . gene_id "RvY_02289"; transcript_id "RvY_02289.1"; Scaffold001 rebuild exon 6377543 6377711 . - . gene_id "RvY_02289"; transcript_id "RvY_02289.1"; Scaffold001 rebuild transcript 6378576 6379068 . + . gene_id "RvY_02290"; transcript_id "RvY_02290.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6378576 6378849 . + . gene_id "RvY_02290"; transcript_id "RvY_02290.1"; Scaffold001 rebuild exon 6378920 6379068 . + . gene_id "RvY_02290"; transcript_id "RvY_02290.1"; Scaffold001 rebuild transcript 6379083 6379658 . + . gene_id "RvY_02291"; transcript_id "RvY_02291.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6379083 6379658 . + . gene_id "RvY_02291"; transcript_id "RvY_02291.1"; Scaffold001 rebuild transcript 6381191 6381523 . - . gene_id "RvY_02292"; transcript_id "RvY_02292.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6381191 6381523 . - . gene_id "RvY_02292"; transcript_id "RvY_02292.1"; Scaffold001 rebuild transcript 6382922 6383529 . + . gene_id "RvY_02293"; transcript_id "RvY_02293.1"; annotation "hypothetical protein."; Pfam "[NDUFA12] NADH ubiquinone oxidoreductase subunit NDUFA12"; KO "K11352"; similar_genes "NDUAC_PONPY(e-value:1.7e-06;bit-score:51.0)"; Scaffold001 rebuild exon 6382922 6383090 . + . gene_id "RvY_02293"; transcript_id "RvY_02293.1"; Scaffold001 rebuild exon 6383158 6383230 . + . gene_id "RvY_02293"; transcript_id "RvY_02293.1"; Scaffold001 rebuild exon 6383289 6383529 . + . gene_id "RvY_02293"; transcript_id "RvY_02293.1"; Scaffold001 rebuild transcript 6384021 6385744 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; annotation "hypothetical protein."; Pfam "[Tmemb_185A] Transmembrane Fragile-X-F protein"; similar_genes "T185L_DANRE(e-value:5.9e-09;bit-score:59.0)"; Scaffold001 rebuild exon 6384021 6384268 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6384336 6384401 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6384484 6384541 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6384685 6384864 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6384926 6385009 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6385070 6385277 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6385445 6385621 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild exon 6385707 6385744 . - . gene_id "RvY_02294"; transcript_id "RvY_02294.1"; Scaffold001 rebuild transcript 6386911 6388267 . + . gene_id "RvY_02295"; transcript_id "RvY_02295.1"; gene_name "Nuc_sug_transp"; annotation "hypothetical protein."; Pfam "[Nuc_sug_transp] Nucleotide-sugar transporter"; CDD "Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc."; KO "K15272"; similar_genes "S35A3_CANFA(e-value:2.2e-23;bit-score:107.0)"; Scaffold001 rebuild exon 6386911 6386920 . + . gene_id "RvY_02295"; transcript_id "RvY_02295.1"; Scaffold001 rebuild exon 6387061 6387407 . + . gene_id "RvY_02295"; transcript_id "RvY_02295.1"; Scaffold001 rebuild exon 6387490 6387595 . + . gene_id "RvY_02295"; transcript_id "RvY_02295.1"; Scaffold001 rebuild exon 6387657 6388267 . + . gene_id "RvY_02295"; transcript_id "RvY_02295.1"; Scaffold001 rebuild transcript 6389094 6393404 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; gene_name "REX1_like"; annotation "hypothetical protein."; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold001 rebuild exon 6389094 6389227 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6389591 6389966 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6390286 6390638 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6390906 6391251 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6391473 6391762 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6391825 6392072 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6392139 6392778 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6392908 6393224 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild exon 6393289 6393404 . - . gene_id "RvY_02296"; transcript_id "RvY_02296.1"; Scaffold001 rebuild transcript 6394856 6398047 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6394856 6395324 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild exon 6396259 6396407 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild exon 6396461 6396584 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild exon 6396802 6397068 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild exon 6397128 6397239 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild exon 6397309 6397495 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild exon 6397829 6398047 . + . gene_id "RvY_02297"; transcript_id "RvY_02297.1"; Scaffold001 rebuild transcript 6399031 6399957 . + . gene_id "RvY_02298"; transcript_id "RvY_02298.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6399031 6399237 . + . gene_id "RvY_02298"; transcript_id "RvY_02298.1"; Scaffold001 rebuild exon 6399349 6399508 . + . gene_id "RvY_02298"; transcript_id "RvY_02298.1"; Scaffold001 rebuild exon 6399731 6399957 . + . gene_id "RvY_02298"; transcript_id "RvY_02298.1"; Scaffold001 rebuild transcript 6400371 6401292 . - . gene_id "RvY_02299"; transcript_id "RvY_02299.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6400371 6400534 . - . gene_id "RvY_02299"; transcript_id "RvY_02299.1"; Scaffold001 rebuild exon 6400776 6401059 . - . gene_id "RvY_02299"; transcript_id "RvY_02299.1"; Scaffold001 rebuild exon 6401207 6401292 . - . gene_id "RvY_02299"; transcript_id "RvY_02299.1"; Scaffold001 rebuild transcript 6401945 6402567 . - . gene_id "RvY_02300"; transcript_id "RvY_02300.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6401945 6401995 . - . gene_id "RvY_02300"; transcript_id "RvY_02300.1"; Scaffold001 rebuild exon 6402314 6402458 . - . gene_id "RvY_02300"; transcript_id "RvY_02300.1"; Scaffold001 rebuild exon 6402539 6402567 . - . gene_id "RvY_02300"; transcript_id "RvY_02300.1"; Scaffold001 rebuild transcript 6403006 6403413 . - . gene_id "RvY_02301"; transcript_id "RvY_02301.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6403006 6403413 . - . gene_id "RvY_02301"; transcript_id "RvY_02301.1"; Scaffold001 rebuild transcript 6403606 6404377 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6403606 6403769 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.1"; Scaffold001 rebuild exon 6403847 6404030 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.1"; Scaffold001 rebuild exon 6404258 6404377 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.1"; Scaffold001 rebuild transcript 6403606 6404413 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6403606 6403769 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.2"; Scaffold001 rebuild exon 6403847 6404030 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.2"; Scaffold001 rebuild exon 6404258 6404326 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.2"; Scaffold001 rebuild exon 6404408 6404413 . - . gene_id "RvY_02302"; transcript_id "RvY_02302.2"; Scaffold001 rebuild transcript 6408552 6409817 . - . gene_id "RvY_02303"; transcript_id "RvY_02303.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6408552 6408780 . - . gene_id "RvY_02303"; transcript_id "RvY_02303.1"; Scaffold001 rebuild exon 6408807 6409043 . - . gene_id "RvY_02303"; transcript_id "RvY_02303.1"; Scaffold001 rebuild exon 6409141 6409494 . - . gene_id "RvY_02303"; transcript_id "RvY_02303.1"; Scaffold001 rebuild exon 6409696 6409817 . - . gene_id "RvY_02303"; transcript_id "RvY_02303.1"; Scaffold001 rebuild transcript 6410467 6410691 . - . gene_id "RvY_02304"; transcript_id "RvY_02304.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6410467 6410691 . - . gene_id "RvY_02304"; transcript_id "RvY_02304.1"; Scaffold001 rebuild transcript 6411658 6412769 . + . gene_id "RvY_02305"; transcript_id "RvY_02305.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6411658 6411838 . + . gene_id "RvY_02305"; transcript_id "RvY_02305.1"; Scaffold001 rebuild exon 6412099 6412769 . + . gene_id "RvY_02305"; transcript_id "RvY_02305.1"; Scaffold001 rebuild transcript 6413028 6414275 . - . gene_id "RvY_02306"; transcript_id "RvY_02306.1"; annotation "hypothetical protein."; Pfam "[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6413028 6414275 . - . gene_id "RvY_02306"; transcript_id "RvY_02306.1"; Scaffold001 rebuild transcript 6414915 6417714 . + . gene_id "RvY_02307"; transcript_id "RvY_02307.1"; gene_name "MTA"; annotation "putative Metastasis-associated protein MTA3"; Pfam "[BAH]"; CDD "BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions."; KO "K11660"; similar_genes "MTA3_BOVIN(e-value:1.2e-32;bit-score:137.0)"; Scaffold001 rebuild exon 6414915 6415527 . + . gene_id "RvY_02307"; transcript_id "RvY_02307.1"; Scaffold001 rebuild exon 6415703 6416103 . + . gene_id "RvY_02307"; transcript_id "RvY_02307.1"; Scaffold001 rebuild exon 6416255 6417020 . + . gene_id "RvY_02307"; transcript_id "RvY_02307.1"; Scaffold001 rebuild exon 6417293 6417714 . + . gene_id "RvY_02307"; transcript_id "RvY_02307.1"; Scaffold001 rebuild transcript 6418262 6418936 . + . gene_id "RvY_02308"; transcript_id "RvY_02308.1"; annotation "hypothetical protein."; Pfam "[DUF2039] Uncharacterized conserved protein (DUF2039)"; Scaffold001 rebuild exon 6418262 6418470 . + . gene_id "RvY_02308"; transcript_id "RvY_02308.1"; Scaffold001 rebuild exon 6418627 6418936 . + . gene_id "RvY_02308"; transcript_id "RvY_02308.1"; Scaffold001 rebuild transcript 6418788 6419141 . + . gene_id "RvY_02308"; transcript_id "RvY_02308.2"; annotation "hypothetical protein."; Pfam "[DUF2039] Uncharacterized conserved protein (DUF2039)"; Scaffold001 rebuild exon 6418788 6419141 . + . gene_id "RvY_02308"; transcript_id "RvY_02308.2"; Scaffold001 rebuild transcript 6419015 6419302 . - . gene_id "RvY_02309"; transcript_id "RvY_02309.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6419015 6419302 . - . gene_id "RvY_02309"; transcript_id "RvY_02309.1"; Scaffold001 rebuild transcript 6420005 6422516 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; gene_name "TrmA"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[tRNA_U5-meth_tr] tRNA (Uracil-5-)-methyltransferase|[Methyltransf_31] Methyltransferase domain|[MTS] Methyltransferase small domain|[Methyltransf_25] Methyltransferase domain"; CDD "SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]"; similar_genes "C3H24_ARATH(e-value:2.3e-10;bit-score:63.0)"; Scaffold001 rebuild exon 6420005 6420143 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6420215 6420314 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6420404 6420526 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6420944 6421045 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6421109 6421323 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6421386 6421633 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6421711 6421881 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild exon 6422034 6422516 . - . gene_id "RvY_02310"; transcript_id "RvY_02310.1"; Scaffold001 rebuild transcript 6424164 6425747 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.1"; gene_name "(1)GPR45"; annotation "(1)G protein-coupled receptor 45(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "(1)K08409"; Scaffold001 rebuild exon 6424164 6424370 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.1"; Scaffold001 rebuild exon 6424754 6425089 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.1"; Scaffold001 rebuild exon 6425202 6425747 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.1"; Scaffold001 rebuild transcript 6424694 6425747 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.2"; gene_name "(1)GPR45"; annotation "(1)G protein-coupled receptor 45(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "(1)K08409"; Scaffold001 rebuild exon 6424694 6425089 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.2"; Scaffold001 rebuild exon 6425202 6425747 . - . gene_id "RvY_02311"; transcript_id "RvY_02311.2"; Scaffold001 rebuild transcript 6426536 6428225 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; gene_name "RAB36"; annotation "putative Ras-related protein Rab-36"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; CDD "Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins."; KO "K07922"; similar_genes "RAB36_HUMAN(e-value:4.9e-36;bit-score:149.0)"; Scaffold001 rebuild exon 6426536 6426612 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild exon 6426692 6426908 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild exon 6426978 6427108 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild exon 6427180 6427244 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild exon 6427356 6427457 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild exon 6427885 6428048 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild exon 6428127 6428225 . - . gene_id "RvY_02312"; transcript_id "RvY_02312.1"; Scaffold001 rebuild transcript 6430039 6430410 . + . gene_id "RvY_02313"; transcript_id "RvY_02313.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6430039 6430410 . + . gene_id "RvY_02313"; transcript_id "RvY_02313.1"; Scaffold001 rebuild transcript 6430722 6434084 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.1"; gene_name "(1,2)LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat"; CDD "(1,2)Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold001 rebuild exon 6430722 6431896 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.1"; Scaffold001 rebuild exon 6432648 6433343 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.1"; Scaffold001 rebuild exon 6433424 6434084 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.1"; Scaffold001 rebuild transcript 6430722 6434231 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.2"; gene_name "(1,2)LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat"; CDD "(1,2)Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold001 rebuild exon 6430722 6431896 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.2"; Scaffold001 rebuild exon 6432648 6433343 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.2"; Scaffold001 rebuild exon 6433424 6434067 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.2"; Scaffold001 rebuild exon 6434227 6434231 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.2"; Scaffold001 rebuild transcript 6431870 6434084 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.3"; gene_name "(1,2)LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat"; CDD "(1,2)Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold001 rebuild exon 6431870 6431898 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.3"; Scaffold001 rebuild exon 6432648 6433343 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.3"; Scaffold001 rebuild exon 6433424 6434084 . - . gene_id "RvY_02314"; transcript_id "RvY_02314.3"; Scaffold001 rebuild transcript 6435205 6435729 . - . gene_id "RvY_02315"; transcript_id "RvY_02315.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6435205 6435316 . - . gene_id "RvY_02315"; transcript_id "RvY_02315.1"; Scaffold001 rebuild exon 6435425 6435729 . - . gene_id "RvY_02315"; transcript_id "RvY_02315.1"; Scaffold001 rebuild transcript 6436600 6438298 . + . gene_id "RvY_02316"; transcript_id "RvY_02316.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6436600 6436642 . + . gene_id "RvY_02316"; transcript_id "RvY_02316.1"; Scaffold001 rebuild exon 6436945 6437054 . + . gene_id "RvY_02316"; transcript_id "RvY_02316.1"; Scaffold001 rebuild exon 6437225 6438298 . + . gene_id "RvY_02316"; transcript_id "RvY_02316.1"; Scaffold001 rebuild transcript 6437219 6438298 . + . gene_id "RvY_02316"; transcript_id "RvY_02316.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6437219 6438298 . + . gene_id "RvY_02316"; transcript_id "RvY_02316.2"; Scaffold001 rebuild transcript 6441194 6445380 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; annotation "hypothetical protein."; Pfam "(1)[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|(1)[Ion_trans] Ion transport protein"; similar_genes "(1)SLO_DROME(e-value:1.4e-12;bit-score:71.0)"; Scaffold001 rebuild exon 6441194 6441424 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6441507 6441719 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6441807 6441979 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6442049 6442598 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6442662 6442827 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6442909 6443071 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6443153 6443235 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6443321 6443476 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6443538 6443890 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6443954 6444212 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6444288 6444490 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6444557 6444638 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6444722 6444861 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6444962 6445113 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild exon 6445308 6445380 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.1"; Scaffold001 rebuild transcript 6441300 6444361 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; annotation "hypothetical protein."; Pfam "(1)[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|(1)[Ion_trans] Ion transport protein"; similar_genes "(1)SLO_DROME(e-value:1.4e-12;bit-score:71.0)"; Scaffold001 rebuild exon 6441300 6441719 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6441807 6441979 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6442049 6442598 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6442662 6442827 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6442909 6443071 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6443153 6443235 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6443321 6443476 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6443538 6443890 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6443954 6444212 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild exon 6444288 6444361 . - . gene_id "RvY_02317"; transcript_id "RvY_02317.2"; Scaffold001 rebuild transcript 6447538 6449642 . - . gene_id "RvY_02318"; transcript_id "RvY_02318.1"; annotation "putative Lysine-specific demethylase 6A"; Pfam "[JmjC] JmjC domain, hydroxylase"; EC "EC1.14.11.-"; similar_genes "KDM6A_MOUSE(e-value:2.1e-34;bit-score:143.0)"; Scaffold001 rebuild exon 6447538 6447720 . - . gene_id "RvY_02318"; transcript_id "RvY_02318.1"; Scaffold001 rebuild exon 6447785 6448247 . - . gene_id "RvY_02318"; transcript_id "RvY_02318.1"; Scaffold001 rebuild exon 6448601 6448973 . - . gene_id "RvY_02318"; transcript_id "RvY_02318.1"; Scaffold001 rebuild exon 6449054 6449642 . - . gene_id "RvY_02318"; transcript_id "RvY_02318.1"; Scaffold001 rebuild transcript 6455021 6456454 . + . gene_id "RvY_02319"; transcript_id "RvY_02319.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6455021 6455101 . + . gene_id "RvY_02319"; transcript_id "RvY_02319.1"; Scaffold001 rebuild exon 6455652 6455906 . + . gene_id "RvY_02319"; transcript_id "RvY_02319.1"; Scaffold001 rebuild exon 6456008 6456454 . + . gene_id "RvY_02319"; transcript_id "RvY_02319.1"; Scaffold001 rebuild transcript 6456779 6457042 . + . gene_id "RvY_02320"; transcript_id "RvY_02320.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6456779 6457042 . + . gene_id "RvY_02320"; transcript_id "RvY_02320.1"; Scaffold001 rebuild transcript 6457661 6458250 . + . gene_id "RvY_02321"; transcript_id "RvY_02321.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6457661 6457723 . + . gene_id "RvY_02321"; transcript_id "RvY_02321.1"; Scaffold001 rebuild exon 6457870 6458250 . + . gene_id "RvY_02321"; transcript_id "RvY_02321.1"; Scaffold001 rebuild transcript 6459092 6460121 . - . gene_id "RvY_02322"; transcript_id "RvY_02322.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6459092 6459369 . - . gene_id "RvY_02322"; transcript_id "RvY_02322.1"; Scaffold001 rebuild exon 6459446 6459505 . - . gene_id "RvY_02322"; transcript_id "RvY_02322.1"; Scaffold001 rebuild exon 6460019 6460121 . - . gene_id "RvY_02322"; transcript_id "RvY_02322.1"; Scaffold001 rebuild transcript 6460870 6461835 . - . gene_id "RvY_02323"; transcript_id "RvY_02323.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6460870 6461259 . - . gene_id "RvY_02323"; transcript_id "RvY_02323.1"; Scaffold001 rebuild exon 6461388 6461644 . - . gene_id "RvY_02323"; transcript_id "RvY_02323.1"; Scaffold001 rebuild exon 6461712 6461835 . - . gene_id "RvY_02323"; transcript_id "RvY_02323.1"; Scaffold001 rebuild transcript 6462658 6463659 . + . gene_id "RvY_02324"; transcript_id "RvY_02324.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6462658 6463659 . + . gene_id "RvY_02324"; transcript_id "RvY_02324.1"; Scaffold001 rebuild transcript 6464002 6465582 . + . gene_id "RvY_02325"; transcript_id "RvY_02325.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6464002 6464038 . + . gene_id "RvY_02325"; transcript_id "RvY_02325.1"; Scaffold001 rebuild exon 6464100 6464683 . + . gene_id "RvY_02325"; transcript_id "RvY_02325.1"; Scaffold001 rebuild exon 6465136 6465582 . + . gene_id "RvY_02325"; transcript_id "RvY_02325.1"; Scaffold001 rebuild transcript 6466528 6467016 . - . gene_id "RvY_02326"; transcript_id "RvY_02326.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6466528 6467016 . - . gene_id "RvY_02326"; transcript_id "RvY_02326.1"; Scaffold001 rebuild transcript 6467846 6469443 . + . gene_id "RvY_02327"; transcript_id "RvY_02327.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6467846 6467951 . + . gene_id "RvY_02327"; transcript_id "RvY_02327.1"; Scaffold001 rebuild exon 6468749 6469443 . + . gene_id "RvY_02327"; transcript_id "RvY_02327.1"; Scaffold001 rebuild transcript 6470143 6471830 . - . gene_id "RvY_02328"; transcript_id "RvY_02328.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6470143 6470203 . - . gene_id "RvY_02328"; transcript_id "RvY_02328.1"; Scaffold001 rebuild exon 6471254 6471597 . - . gene_id "RvY_02328"; transcript_id "RvY_02328.1"; Scaffold001 rebuild exon 6471690 6471830 . - . gene_id "RvY_02328"; transcript_id "RvY_02328.1"; Scaffold001 rebuild transcript 6472252 6473511 . + . gene_id "RvY_02329"; transcript_id "RvY_02329.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6472252 6472516 . + . gene_id "RvY_02329"; transcript_id "RvY_02329.1"; Scaffold001 rebuild exon 6472656 6472948 . + . gene_id "RvY_02329"; transcript_id "RvY_02329.1"; Scaffold001 rebuild exon 6473221 6473511 . + . gene_id "RvY_02329"; transcript_id "RvY_02329.1"; Scaffold001 rebuild transcript 6474305 6474989 . - . gene_id "RvY_02330"; transcript_id "RvY_02330.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6474305 6474637 . - . gene_id "RvY_02330"; transcript_id "RvY_02330.1"; Scaffold001 rebuild exon 6474828 6474989 . - . gene_id "RvY_02330"; transcript_id "RvY_02330.1"; Scaffold001 rebuild transcript 6475579 6477208 . + . gene_id "RvY_02331"; transcript_id "RvY_02331.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold001 rebuild exon 6475579 6475861 . + . gene_id "RvY_02331"; transcript_id "RvY_02331.1"; Scaffold001 rebuild exon 6476037 6476236 . + . gene_id "RvY_02331"; transcript_id "RvY_02331.1"; Scaffold001 rebuild exon 6476612 6477208 . + . gene_id "RvY_02331"; transcript_id "RvY_02331.1"; Scaffold001 rebuild transcript 6477653 6479003 . + . gene_id "RvY_02332"; transcript_id "RvY_02332.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6477653 6477956 . + . gene_id "RvY_02332"; transcript_id "RvY_02332.1"; Scaffold001 rebuild exon 6478367 6478455 . + . gene_id "RvY_02332"; transcript_id "RvY_02332.1"; Scaffold001 rebuild exon 6478548 6479003 . + . gene_id "RvY_02332"; transcript_id "RvY_02332.1"; Scaffold001 rebuild transcript 6479284 6479493 . + . gene_id "RvY_02333"; transcript_id "RvY_02333.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6479284 6479493 . + . gene_id "RvY_02333"; transcript_id "RvY_02333.1"; Scaffold001 rebuild transcript 6480435 6481134 . + . gene_id "RvY_02334"; transcript_id "RvY_02334.1"; gene_name "ARFRP1"; annotation "putative ADP-ribosylation factor-related protein 1"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[G-alpha] G-protein alpha subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development."; KO "K07952"; similar_genes "ARFRP_BOVIN(e-value:1.6e-30;bit-score:130.0)"; Scaffold001 rebuild exon 6480435 6480962 . + . gene_id "RvY_02334"; transcript_id "RvY_02334.1"; Scaffold001 rebuild exon 6481108 6481134 . + . gene_id "RvY_02334"; transcript_id "RvY_02334.1"; Scaffold001 rebuild transcript 6481209 6487386 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; similar_genes "PKHG3_HUMAN(e-value:4.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 6481209 6481576 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6481892 6482183 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6482259 6482640 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6482832 6483052 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6484251 6484892 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6484997 6485424 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6485484 6485715 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6485807 6485965 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6486217 6486738 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild exon 6486991 6487386 . - . gene_id "RvY_02335"; transcript_id "RvY_02335.1"; Scaffold001 rebuild transcript 6490260 6490562 . + . gene_id "RvY_02336"; transcript_id "RvY_02336.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6490260 6490562 . + . gene_id "RvY_02336"; transcript_id "RvY_02336.1"; Scaffold001 rebuild transcript 6492270 6492845 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6492270 6492394 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.1"; Scaffold001 rebuild exon 6492554 6492845 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.1"; Scaffold001 rebuild transcript 6492270 6492813 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6492270 6492394 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.2"; Scaffold001 rebuild exon 6492554 6492668 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.2"; Scaffold001 rebuild exon 6492772 6492813 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.2"; Scaffold001 rebuild transcript 6492270 6492781 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6492270 6492394 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.3"; Scaffold001 rebuild exon 6492554 6492685 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.3"; Scaffold001 rebuild exon 6492772 6492781 . + . gene_id "RvY_02337"; transcript_id "RvY_02337.3"; Scaffold001 rebuild transcript 6497068 6497486 . - . gene_id "RvY_02338"; transcript_id "RvY_02338.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6497068 6497320 . - . gene_id "RvY_02338"; transcript_id "RvY_02338.1"; Scaffold001 rebuild exon 6497434 6497486 . - . gene_id "RvY_02338"; transcript_id "RvY_02338.1"; Scaffold001 rebuild transcript 6497622 6499014 . - . gene_id "RvY_02339"; transcript_id "RvY_02339.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 6497622 6498158 . - . gene_id "RvY_02339"; transcript_id "RvY_02339.1"; Scaffold001 rebuild exon 6498224 6498467 . - . gene_id "RvY_02339"; transcript_id "RvY_02339.1"; Scaffold001 rebuild exon 6498554 6498682 . - . gene_id "RvY_02339"; transcript_id "RvY_02339.1"; Scaffold001 rebuild exon 6498776 6499014 . - . gene_id "RvY_02339"; transcript_id "RvY_02339.1"; Scaffold001 rebuild transcript 6499671 6505996 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; gene_name "BRIGHT"; annotation "hypothetical protein."; Pfam "[ARID] ARID/BRIGHT DNA binding domain|[Tudor-knot] RNA binding activity-knot of a chromodomain"; CDD "BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure"; Scaffold001 rebuild exon 6499671 6499798 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6499912 6500076 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6500151 6500267 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6500344 6500904 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6501106 6502079 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6502467 6502619 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6502857 6503327 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6503633 6504093 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6504363 6505321 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild exon 6505570 6505996 . - . gene_id "RvY_02340"; transcript_id "RvY_02340.1"; Scaffold001 rebuild transcript 6506611 6507145 . - . gene_id "RvY_02341"; transcript_id "RvY_02341.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6506611 6506778 . - . gene_id "RvY_02341"; transcript_id "RvY_02341.1"; Scaffold001 rebuild exon 6506975 6507145 . - . gene_id "RvY_02341"; transcript_id "RvY_02341.1"; Scaffold001 rebuild transcript 6507611 6508051 . - . gene_id "RvY_02342"; transcript_id "RvY_02342.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)|[DDE_3] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6507611 6508051 . - . gene_id "RvY_02342"; transcript_id "RvY_02342.1"; Scaffold001 rebuild transcript 6508058 6508630 . - . gene_id "RvY_02343"; transcript_id "RvY_02343.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold001 rebuild exon 6508058 6508630 . - . gene_id "RvY_02343"; transcript_id "RvY_02343.1"; Scaffold001 rebuild transcript 6509297 6510526 . - . gene_id "RvY_02344"; transcript_id "RvY_02344.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6509297 6510526 . - . gene_id "RvY_02344"; transcript_id "RvY_02344.1"; Scaffold001 rebuild transcript 6511144 6511410 . - . gene_id "RvY_02345"; transcript_id "RvY_02345.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6511144 6511410 . - . gene_id "RvY_02345"; transcript_id "RvY_02345.1"; Scaffold001 rebuild transcript 6514549 6514834 . + . gene_id "RvY_02346"; transcript_id "RvY_02346.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6514549 6514573 . + . gene_id "RvY_02346"; transcript_id "RvY_02346.1"; Scaffold001 rebuild exon 6514656 6514834 . + . gene_id "RvY_02346"; transcript_id "RvY_02346.1"; Scaffold001 rebuild transcript 6518575 6519228 . - . gene_id "RvY_02347"; transcript_id "RvY_02347.1"; gene_name "TyrKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "EC2.7.10.1"; similar_genes "FGFR1_HUMAN(e-value:1.0e-08;bit-score:58.0)"; Scaffold001 rebuild exon 6518575 6518958 . - . gene_id "RvY_02347"; transcript_id "RvY_02347.1"; Scaffold001 rebuild exon 6519124 6519228 . - . gene_id "RvY_02347"; transcript_id "RvY_02347.1"; Scaffold001 rebuild transcript 6520043 6520880 . + . gene_id "RvY_02348"; transcript_id "RvY_02348.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold001 rebuild exon 6520043 6520055 . + . gene_id "RvY_02348"; transcript_id "RvY_02348.1"; Scaffold001 rebuild exon 6520352 6520483 . + . gene_id "RvY_02348"; transcript_id "RvY_02348.1"; Scaffold001 rebuild exon 6520678 6520880 . + . gene_id "RvY_02348"; transcript_id "RvY_02348.1"; Scaffold001 rebuild transcript 6520907 6521599 . + . gene_id "RvY_02349"; transcript_id "RvY_02349.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6520907 6521599 . + . gene_id "RvY_02349"; transcript_id "RvY_02349.1"; Scaffold001 rebuild transcript 6521602 6522132 . + . gene_id "RvY_02350"; transcript_id "RvY_02350.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6521602 6522132 . + . gene_id "RvY_02350"; transcript_id "RvY_02350.1"; Scaffold001 rebuild transcript 6522135 6523259 . + . gene_id "RvY_02351"; transcript_id "RvY_02351.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6522135 6523259 . + . gene_id "RvY_02351"; transcript_id "RvY_02351.1"; Scaffold001 rebuild transcript 6523459 6524034 . + . gene_id "RvY_02352"; transcript_id "RvY_02352.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C5] Adenovirus endoprotease"; Scaffold001 rebuild exon 6523459 6524034 . + . gene_id "RvY_02352"; transcript_id "RvY_02352.1"; Scaffold001 rebuild transcript 6524121 6524393 . - . gene_id "RvY_02353"; transcript_id "RvY_02353.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6524121 6524393 . - . gene_id "RvY_02353"; transcript_id "RvY_02353.1"; Scaffold001 rebuild transcript 6524577 6525060 . - . gene_id "RvY_02354"; transcript_id "RvY_02354.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6524577 6524730 . - . gene_id "RvY_02354"; transcript_id "RvY_02354.1"; Scaffold001 rebuild exon 6524753 6525060 . - . gene_id "RvY_02354"; transcript_id "RvY_02354.1"; Scaffold001 rebuild transcript 6525062 6528431 . - . gene_id "RvY_02355"; transcript_id "RvY_02355.1"; annotation "hypothetical protein."; Pfam "[DNA_pol_B_2] DNA polymerase type B, organellar and viral"; Scaffold001 rebuild exon 6525062 6525338 . - . gene_id "RvY_02355"; transcript_id "RvY_02355.1"; Scaffold001 rebuild exon 6526072 6526677 . - . gene_id "RvY_02355"; transcript_id "RvY_02355.1"; Scaffold001 rebuild exon 6526855 6527071 . - . gene_id "RvY_02355"; transcript_id "RvY_02355.1"; Scaffold001 rebuild exon 6527241 6527788 . - . gene_id "RvY_02355"; transcript_id "RvY_02355.1"; Scaffold001 rebuild exon 6527887 6528431 . - . gene_id "RvY_02355"; transcript_id "RvY_02355.1"; Scaffold001 rebuild transcript 6528518 6528694 . - . gene_id "RvY_02356"; transcript_id "RvY_02356.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6528518 6528694 . - . gene_id "RvY_02356"; transcript_id "RvY_02356.1"; Scaffold001 rebuild transcript 6529718 6531952 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 6529718 6529948 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; Scaffold001 rebuild exon 6530099 6530444 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; Scaffold001 rebuild exon 6530527 6530657 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; Scaffold001 rebuild exon 6530799 6531307 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; Scaffold001 rebuild exon 6531333 6531452 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; Scaffold001 rebuild exon 6531553 6531952 . + . gene_id "RvY_02357"; transcript_id "RvY_02357.1"; Scaffold001 rebuild transcript 6532520 6532840 . - . gene_id "RvY_02358"; transcript_id "RvY_02358.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6532520 6532840 . - . gene_id "RvY_02358"; transcript_id "RvY_02358.1"; Scaffold001 rebuild transcript 6533416 6533996 . - . gene_id "RvY_02359"; transcript_id "RvY_02359.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6533416 6533539 . - . gene_id "RvY_02359"; transcript_id "RvY_02359.1"; Scaffold001 rebuild exon 6533786 6533869 . - . gene_id "RvY_02359"; transcript_id "RvY_02359.1"; Scaffold001 rebuild exon 6533938 6533996 . - . gene_id "RvY_02359"; transcript_id "RvY_02359.1"; Scaffold001 rebuild transcript 6535535 6535762 . - . gene_id "RvY_02360"; transcript_id "RvY_02360.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6535535 6535762 . - . gene_id "RvY_02360"; transcript_id "RvY_02360.1"; Scaffold001 rebuild transcript 6538663 6539013 . - . gene_id "RvY_02361"; transcript_id "RvY_02361.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6538663 6539013 . - . gene_id "RvY_02361"; transcript_id "RvY_02361.1"; Scaffold001 rebuild transcript 6540492 6541588 . - . gene_id "RvY_02362"; transcript_id "RvY_02362.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6540492 6541270 . - . gene_id "RvY_02362"; transcript_id "RvY_02362.1"; Scaffold001 rebuild exon 6541371 6541446 . - . gene_id "RvY_02362"; transcript_id "RvY_02362.1"; Scaffold001 rebuild exon 6541580 6541588 . - . gene_id "RvY_02362"; transcript_id "RvY_02362.1"; Scaffold001 rebuild transcript 6540492 6541058 . - . gene_id "RvY_02362"; transcript_id "RvY_02362.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6540492 6541058 . - . gene_id "RvY_02362"; transcript_id "RvY_02362.2"; Scaffold001 rebuild transcript 6542091 6542874 . - . gene_id "RvY_02363"; transcript_id "RvY_02363.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 6542091 6542365 . - . gene_id "RvY_02363"; transcript_id "RvY_02363.1"; Scaffold001 rebuild exon 6542502 6542874 . - . gene_id "RvY_02363"; transcript_id "RvY_02363.1"; Scaffold001 rebuild transcript 6542461 6542874 . - . gene_id "RvY_02363"; transcript_id "RvY_02363.2"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 6542461 6542874 . - . gene_id "RvY_02363"; transcript_id "RvY_02363.2"; Scaffold001 rebuild transcript 6543845 6547700 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; gene_name "K01528"; annotation "Dynamin-1-like protein"; Pfam "[Dynamin_M] Dynamin central region|[Dynamin_N] Dynamin family|[GED] Dynamin GTPase effector domain"; EC "EC3.6.5.5"; KO "K01528"; similar_genes "DNM1L_HUMAN(e-value:9.6e-194;bit-score:673.0)"; Scaffold001 rebuild exon 6543845 6544018 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6544268 6544426 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6544726 6545169 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6545501 6545653 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6545721 6546047 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6546266 6546370 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6546465 6546613 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6546684 6546846 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6547004 6547090 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6547192 6547313 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6547383 6547527 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild exon 6547599 6547700 . - . gene_id "RvY_02364"; transcript_id "RvY_02364.1"; Scaffold001 rebuild transcript 6548478 6549303 . + . gene_id "RvY_02365"; transcript_id "RvY_02365.1"; product "SAHS4"; annotation "SAHS_c3 | hypothetical protein."; Scaffold001 rebuild exon 6548478 6548511 . + . gene_id "RvY_02365"; transcript_id "RvY_02365.1"; Scaffold001 rebuild exon 6548655 6548971 . + . gene_id "RvY_02365"; transcript_id "RvY_02365.1"; Scaffold001 rebuild exon 6549043 6549150 . + . gene_id "RvY_02365"; transcript_id "RvY_02365.1"; Scaffold001 rebuild exon 6549247 6549303 . + . gene_id "RvY_02365"; transcript_id "RvY_02365.1"; Scaffold001 rebuild transcript 6554461 6554862 . - . gene_id "RvY_02366"; transcript_id "RvY_02366.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6554461 6554862 . - . gene_id "RvY_02366"; transcript_id "RvY_02366.1"; Scaffold001 rebuild transcript 6554867 6555723 . + . gene_id "RvY_02367"; transcript_id "RvY_02367.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6554867 6554971 . + . gene_id "RvY_02367"; transcript_id "RvY_02367.1"; Scaffold001 rebuild exon 6555101 6555358 . + . gene_id "RvY_02367"; transcript_id "RvY_02367.1"; Scaffold001 rebuild exon 6555637 6555723 . + . gene_id "RvY_02367"; transcript_id "RvY_02367.1"; Scaffold001 rebuild transcript 6560897 6561289 . - . gene_id "RvY_02368"; transcript_id "RvY_02368.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6560897 6561289 . - . gene_id "RvY_02368"; transcript_id "RvY_02368.1"; Scaffold001 rebuild transcript 6561550 6562026 . - . gene_id "RvY_02369"; transcript_id "RvY_02369.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6561550 6562026 . - . gene_id "RvY_02369"; transcript_id "RvY_02369.1"; Scaffold001 rebuild transcript 6561474 6562026 . - . gene_id "RvY_02369"; transcript_id "RvY_02369.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6561474 6561523 . - . gene_id "RvY_02369"; transcript_id "RvY_02369.2"; Scaffold001 rebuild exon 6561606 6562026 . - . gene_id "RvY_02369"; transcript_id "RvY_02369.2"; Scaffold001 rebuild transcript 6562193 6562804 . + . gene_id "RvY_02370"; transcript_id "RvY_02370.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6562193 6562804 . + . gene_id "RvY_02370"; transcript_id "RvY_02370.1"; Scaffold001 rebuild transcript 6563963 6567727 . + . gene_id "RvY_02371"; transcript_id "RvY_02371.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6563963 6564406 . + . gene_id "RvY_02371"; transcript_id "RvY_02371.1"; Scaffold001 rebuild exon 6565892 6566380 . + . gene_id "RvY_02371"; transcript_id "RvY_02371.1"; Scaffold001 rebuild exon 6566673 6567261 . + . gene_id "RvY_02371"; transcript_id "RvY_02371.1"; Scaffold001 rebuild exon 6567303 6567727 . + . gene_id "RvY_02371"; transcript_id "RvY_02371.1"; Scaffold001 rebuild transcript 6569434 6571372 . - . gene_id "RvY_02372"; transcript_id "RvY_02372.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6569434 6569913 . - . gene_id "RvY_02372"; transcript_id "RvY_02372.1"; Scaffold001 rebuild exon 6570085 6570306 . - . gene_id "RvY_02372"; transcript_id "RvY_02372.1"; Scaffold001 rebuild exon 6570458 6570969 . - . gene_id "RvY_02372"; transcript_id "RvY_02372.1"; Scaffold001 rebuild exon 6571198 6571372 . - . gene_id "RvY_02372"; transcript_id "RvY_02372.1"; Scaffold001 rebuild transcript 6575328 6575668 . + . gene_id "RvY_02373"; transcript_id "RvY_02373.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6575328 6575412 . + . gene_id "RvY_02373"; transcript_id "RvY_02373.1"; Scaffold001 rebuild exon 6575565 6575668 . + . gene_id "RvY_02373"; transcript_id "RvY_02373.1"; Scaffold001 rebuild transcript 6577241 6577540 . - . gene_id "RvY_02374"; transcript_id "RvY_02374.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6577241 6577413 . - . gene_id "RvY_02374"; transcript_id "RvY_02374.1"; Scaffold001 rebuild exon 6577468 6577540 . - . gene_id "RvY_02374"; transcript_id "RvY_02374.1"; Scaffold001 rebuild transcript 6578037 6578375 . - . gene_id "RvY_02375"; transcript_id "RvY_02375.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6578037 6578375 . - . gene_id "RvY_02375"; transcript_id "RvY_02375.1"; Scaffold001 rebuild transcript 6578958 6579287 . - . gene_id "RvY_02376"; transcript_id "RvY_02376.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6578958 6579287 . - . gene_id "RvY_02376"; transcript_id "RvY_02376.1"; Scaffold001 rebuild transcript 6583953 6584189 . + . gene_id "RvY_02377"; transcript_id "RvY_02377.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6583953 6584189 . + . gene_id "RvY_02377"; transcript_id "RvY_02377.1"; Scaffold001 rebuild transcript 6588487 6590442 . - . gene_id "RvY_02378"; transcript_id "RvY_02378.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6588487 6588629 . - . gene_id "RvY_02378"; transcript_id "RvY_02378.1"; Scaffold001 rebuild exon 6588702 6589190 . - . gene_id "RvY_02378"; transcript_id "RvY_02378.1"; Scaffold001 rebuild exon 6589500 6590442 . - . gene_id "RvY_02378"; transcript_id "RvY_02378.1"; Scaffold001 rebuild transcript 6591531 6596915 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; gene_name "RhoGAP_ARHGAP18"; annotation "hypothetical protein."; Pfam "[RhoGAP]"; CDD "RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold001 rebuild exon 6591531 6591631 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6591857 6592501 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6592716 6593033 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6593197 6593413 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6593662 6593742 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6594005 6594138 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6594357 6594528 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6594613 6595068 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6595433 6595596 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6595701 6595844 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6595985 6596167 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild exon 6596594 6596915 . - . gene_id "RvY_02379"; transcript_id "RvY_02379.1"; Scaffold001 rebuild transcript 6604994 6607212 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; gene_name "FUCA"; annotation "Plasma alpha-L-fucosidase"; Pfam "[Alpha_L_fucos] Alpha-L-fucosidase"; CDD "Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis."; EC "EC3.2.1.51"; KO "K01206"; similar_genes "FUCO2_RAT(e-value:4.9e-53;bit-score:205.0)"; Scaffold001 rebuild exon 6604994 6605336 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6605403 6605576 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6605645 6605777 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6605864 6605961 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6606050 6606180 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6606280 6606517 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6606631 6606792 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6606866 6606941 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild exon 6607029 6607212 . - . gene_id "RvY_02380"; transcript_id "RvY_02380.1"; Scaffold001 rebuild transcript 6608777 6610501 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; gene_name "COPS7"; annotation "COP9 signalosome complex subunit 7"; KO "K12180"; Scaffold001 rebuild exon 6608777 6608935 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild exon 6609026 6609101 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild exon 6609201 6609295 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild exon 6609491 6609693 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild exon 6609776 6609881 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild exon 6609948 6610084 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild exon 6610459 6610501 . + . gene_id "RvY_02381"; transcript_id "RvY_02381.1"; Scaffold001 rebuild transcript 6610618 6611097 . - . gene_id "RvY_02382"; transcript_id "RvY_02382.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6610618 6611097 . - . gene_id "RvY_02382"; transcript_id "RvY_02382.1"; Scaffold001 rebuild transcript 6612749 6613284 . + . gene_id "RvY_02383"; transcript_id "RvY_02383.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6612749 6612904 . + . gene_id "RvY_02383"; transcript_id "RvY_02383.1"; Scaffold001 rebuild exon 6613018 6613284 . + . gene_id "RvY_02383"; transcript_id "RvY_02383.1"; Scaffold001 rebuild transcript 6616923 6617676 . - . gene_id "RvY_02384"; transcript_id "RvY_02384.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6616923 6617246 . - . gene_id "RvY_02384"; transcript_id "RvY_02384.1"; Scaffold001 rebuild exon 6617587 6617676 . - . gene_id "RvY_02384"; transcript_id "RvY_02384.1"; Scaffold001 rebuild transcript 6616999 6617307 . - . gene_id "RvY_02384"; transcript_id "RvY_02384.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6616999 6617307 . - . gene_id "RvY_02384"; transcript_id "RvY_02384.2"; Scaffold001 rebuild transcript 6618314 6620401 . - . gene_id "RvY_02385"; transcript_id "RvY_02385.1"; gene_name "MYST1"; annotation "Probable histone acetyltransferase MYST1"; Pfam "[MOZ_SAS] MOZ/SAS family|[Tudor-knot] RNA binding activity-knot of a chromodomain"; CDD "Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]"; EC "EC2.3.1.48"; KO "K11308"; similar_genes "MYST1_RAT(e-value:2.1e-83;bit-score:306.0)"; Scaffold001 rebuild exon 6618314 6618960 . - . gene_id "RvY_02385"; transcript_id "RvY_02385.1"; Scaffold001 rebuild exon 6619175 6619679 . - . gene_id "RvY_02385"; transcript_id "RvY_02385.1"; Scaffold001 rebuild exon 6619880 6620401 . - . gene_id "RvY_02385"; transcript_id "RvY_02385.1"; Scaffold001 rebuild transcript 6620906 6621755 . + . gene_id "RvY_02386"; transcript_id "RvY_02386.1"; gene_name "PIGF"; annotation "phosphatidylinositol glycan, class F [EC:2.7.-.-]"; Pfam "[PIG-F] GPI biosynthesis protein family Pig-F"; EC "EC2.7.-.-"; KO "K05287"; similar_genes "GPI11_YARLI(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 6620906 6621240 . + . gene_id "RvY_02386"; transcript_id "RvY_02386.1"; Scaffold001 rebuild exon 6621302 6621527 . + . gene_id "RvY_02386"; transcript_id "RvY_02386.1"; Scaffold001 rebuild exon 6621609 6621755 . + . gene_id "RvY_02386"; transcript_id "RvY_02386.1"; Scaffold001 rebuild transcript 6622177 6624134 . - . gene_id "RvY_02387"; transcript_id "RvY_02387.1"; gene_name "SIRT7"; annotation "NAD-dependent deacetylase sirtuin 7 [EC:3.5.1.-]"; Pfam "[SIR2] Sir2 family"; CDD "SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span."; EC "EC3.5.1.-"; KO "K11417"; similar_genes "SIRT7_BOVIN(e-value:3.4e-24;bit-score:109.0)"; Scaffold001 rebuild exon 6622177 6622533 . - . gene_id "RvY_02387"; transcript_id "RvY_02387.1"; Scaffold001 rebuild exon 6622787 6623126 . - . gene_id "RvY_02387"; transcript_id "RvY_02387.1"; Scaffold001 rebuild exon 6623495 6623712 . - . gene_id "RvY_02387"; transcript_id "RvY_02387.1"; Scaffold001 rebuild exon 6623778 6623966 . - . gene_id "RvY_02387"; transcript_id "RvY_02387.1"; Scaffold001 rebuild exon 6624030 6624134 . - . gene_id "RvY_02387"; transcript_id "RvY_02387.1"; Scaffold001 rebuild transcript 6625241 6626788 . + . gene_id "RvY_02388"; transcript_id "RvY_02388.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6625241 6625355 . + . gene_id "RvY_02388"; transcript_id "RvY_02388.1"; Scaffold001 rebuild exon 6625426 6626165 . + . gene_id "RvY_02388"; transcript_id "RvY_02388.1"; Scaffold001 rebuild exon 6626363 6626788 . + . gene_id "RvY_02388"; transcript_id "RvY_02388.1"; Scaffold001 rebuild transcript 6627098 6628040 . - . gene_id "RvY_02389"; transcript_id "RvY_02389.1"; gene_name "PNMT"; annotation "phenylethanolamine N-methyltransferase [EC:2.1.1.28]"; Pfam "[NNMT_PNMT_TEMT] NNMT/PNMT/TEMT family|[Methyltransf_23] Methyltransferase domain"; EC "EC2.1.1.28"; KO "K00553"; Scaffold001 rebuild exon 6627098 6627553 . - . gene_id "RvY_02389"; transcript_id "RvY_02389.1"; Scaffold001 rebuild exon 6627621 6627677 . - . gene_id "RvY_02389"; transcript_id "RvY_02389.1"; Scaffold001 rebuild exon 6627741 6628040 . - . gene_id "RvY_02389"; transcript_id "RvY_02389.1"; Scaffold001 rebuild transcript 6631065 6632665 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.1"; gene_name "(1,2)UNC-93"; annotation "hypothetical protein."; Pfam "(2)[MFS_1] Major Facilitator Superfamily|[UNC-93] Ion channel regulatory protein UNC-93"; CDD "(1,2)Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold001 rebuild exon 6631065 6631500 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.1"; Scaffold001 rebuild exon 6631701 6631738 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.1"; Scaffold001 rebuild exon 6631824 6632053 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.1"; Scaffold001 rebuild exon 6632197 6632489 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.1"; Scaffold001 rebuild exon 6632568 6632665 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.1"; Scaffold001 rebuild transcript 6631851 6633101 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.2"; gene_name "(1,2)UNC-93"; annotation "hypothetical protein."; Pfam "(2)[MFS_1] Major Facilitator Superfamily|[UNC-93] Ion channel regulatory protein UNC-93"; CDD "(1,2)Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold001 rebuild exon 6631851 6632053 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.2"; Scaffold001 rebuild exon 6632197 6632489 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.2"; Scaffold001 rebuild exon 6632568 6632633 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.2"; Scaffold001 rebuild exon 6632701 6632826 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.2"; Scaffold001 rebuild exon 6632905 6633101 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.2"; Scaffold001 rebuild transcript 6632715 6634383 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.3"; gene_name "(1,2)UNC-93"; annotation "hypothetical protein."; Pfam "(2)[MFS_1] Major Facilitator Superfamily|[UNC-93] Ion channel regulatory protein UNC-93"; CDD "(1,2)Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold001 rebuild exon 6632715 6632826 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.3"; Scaffold001 rebuild exon 6632905 6633073 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.3"; Scaffold001 rebuild exon 6633151 6633191 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.3"; Scaffold001 rebuild exon 6633968 6634062 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.3"; Scaffold001 rebuild exon 6634177 6634383 . + . gene_id "RvY_02390"; transcript_id "RvY_02390.3"; Scaffold001 rebuild transcript 6634940 6636297 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 6634940 6635554 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.1"; Scaffold001 rebuild exon 6635639 6635698 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.1"; Scaffold001 rebuild exon 6635864 6636003 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.1"; Scaffold001 rebuild exon 6636078 6636297 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.1"; Scaffold001 rebuild transcript 6635591 6636543 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 6635591 6635698 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.2"; Scaffold001 rebuild exon 6635864 6636003 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.2"; Scaffold001 rebuild exon 6636078 6636543 . - . gene_id "RvY_02391"; transcript_id "RvY_02391.2"; Scaffold001 rebuild transcript 6640378 6640614 . - . gene_id "RvY_02392"; transcript_id "RvY_02392.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6640378 6640614 . - . gene_id "RvY_02392"; transcript_id "RvY_02392.1"; Scaffold001 rebuild transcript 6642593 6647017 . - . gene_id "RvY_02393"; transcript_id "RvY_02393.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6642593 6642798 . - . gene_id "RvY_02393"; transcript_id "RvY_02393.1"; Scaffold001 rebuild exon 6644858 6645385 . - . gene_id "RvY_02393"; transcript_id "RvY_02393.1"; Scaffold001 rebuild exon 6646081 6647017 . - . gene_id "RvY_02393"; transcript_id "RvY_02393.1"; Scaffold001 rebuild transcript 6647323 6648358 . - . gene_id "RvY_02394"; transcript_id "RvY_02394.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6647323 6647481 . - . gene_id "RvY_02394"; transcript_id "RvY_02394.1"; Scaffold001 rebuild exon 6648293 6648358 . - . gene_id "RvY_02394"; transcript_id "RvY_02394.1"; Scaffold001 rebuild transcript 6648713 6649114 . + . gene_id "RvY_02395"; transcript_id "RvY_02395.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6648713 6648781 . + . gene_id "RvY_02395"; transcript_id "RvY_02395.1"; Scaffold001 rebuild exon 6648863 6649114 . + . gene_id "RvY_02395"; transcript_id "RvY_02395.1"; Scaffold001 rebuild transcript 6649676 6650582 . + . gene_id "RvY_02396"; transcript_id "RvY_02396.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6649676 6649697 . + . gene_id "RvY_02396"; transcript_id "RvY_02396.1"; Scaffold001 rebuild exon 6649768 6649878 . + . gene_id "RvY_02396"; transcript_id "RvY_02396.1"; Scaffold001 rebuild exon 6649939 6650001 . + . gene_id "RvY_02396"; transcript_id "RvY_02396.1"; Scaffold001 rebuild exon 6650146 6650582 . + . gene_id "RvY_02396"; transcript_id "RvY_02396.1"; Scaffold001 rebuild transcript 6653595 6653897 . + . gene_id "RvY_02397"; transcript_id "RvY_02397.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6653595 6653897 . + . gene_id "RvY_02397"; transcript_id "RvY_02397.1"; Scaffold001 rebuild transcript 6656861 6657274 . - . gene_id "RvY_02398"; transcript_id "RvY_02398.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6656861 6657061 . - . gene_id "RvY_02398"; transcript_id "RvY_02398.1"; Scaffold001 rebuild exon 6657260 6657274 . - . gene_id "RvY_02398"; transcript_id "RvY_02398.1"; Scaffold001 rebuild transcript 6659430 6659753 . - . gene_id "RvY_02399"; transcript_id "RvY_02399.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6659430 6659753 . - . gene_id "RvY_02399"; transcript_id "RvY_02399.1"; Scaffold001 rebuild transcript 6664203 6666566 . - . gene_id "RvY_02400"; transcript_id "RvY_02400.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold001 rebuild exon 6664203 6665134 . - . gene_id "RvY_02400"; transcript_id "RvY_02400.1"; Scaffold001 rebuild exon 6665344 6665474 . - . gene_id "RvY_02400"; transcript_id "RvY_02400.1"; Scaffold001 rebuild exon 6666445 6666566 . - . gene_id "RvY_02400"; transcript_id "RvY_02400.1"; Scaffold001 rebuild transcript 6667308 6667721 . + . gene_id "RvY_02401"; transcript_id "RvY_02401.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6667308 6667721 . + . gene_id "RvY_02401"; transcript_id "RvY_02401.1"; Scaffold001 rebuild transcript 6667919 6668242 . + . gene_id "RvY_02402"; transcript_id "RvY_02402.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6667919 6668242 . + . gene_id "RvY_02402"; transcript_id "RvY_02402.1"; Scaffold001 rebuild transcript 6668306 6669534 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 6668306 6668335 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; Scaffold001 rebuild exon 6668620 6668658 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; Scaffold001 rebuild exon 6668740 6668826 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; Scaffold001 rebuild exon 6668899 6669057 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; Scaffold001 rebuild exon 6669137 6669187 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; Scaffold001 rebuild exon 6669307 6669534 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.1"; Scaffold001 rebuild transcript 6668788 6669534 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 6668788 6668826 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.2"; Scaffold001 rebuild exon 6668899 6669057 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.2"; Scaffold001 rebuild exon 6669137 6669187 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.2"; Scaffold001 rebuild exon 6669307 6669534 . + . gene_id "RvY_02403"; transcript_id "RvY_02403.2"; Scaffold001 rebuild transcript 6673335 6674725 . - . gene_id "RvY_02404"; transcript_id "RvY_02404.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6673335 6673882 . - . gene_id "RvY_02404"; transcript_id "RvY_02404.1"; Scaffold001 rebuild exon 6673941 6674132 . - . gene_id "RvY_02404"; transcript_id "RvY_02404.1"; Scaffold001 rebuild exon 6674401 6674725 . - . gene_id "RvY_02404"; transcript_id "RvY_02404.1"; Scaffold001 rebuild transcript 6676029 6677462 . + . gene_id "RvY_02405"; transcript_id "RvY_02405.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat"; Scaffold001 rebuild exon 6676029 6677007 . + . gene_id "RvY_02405"; transcript_id "RvY_02405.1"; Scaffold001 rebuild exon 6677251 6677462 . + . gene_id "RvY_02405"; transcript_id "RvY_02405.1"; Scaffold001 rebuild transcript 6677777 6679181 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; gene_name "K06911"; annotation "putative Pirin-like protein At2g43120"; Pfam "[Pirin_C] Pirin C-terminal cupin domain|[Pirin]"; CDD "Pirin-related protein [General function prediction only]"; KO "K06911"; similar_genes "PIRL2_ARATH(e-value:7.5e-39;bit-score:158.0)"; Scaffold001 rebuild exon 6677777 6677862 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; Scaffold001 rebuild exon 6677921 6678254 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; Scaffold001 rebuild exon 6678319 6678522 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; Scaffold001 rebuild exon 6678670 6678843 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; Scaffold001 rebuild exon 6678935 6678969 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; Scaffold001 rebuild exon 6679109 6679181 . - . gene_id "RvY_02406"; transcript_id "RvY_02406.1"; Scaffold001 rebuild transcript 6680057 6680362 . + . gene_id "RvY_02407"; transcript_id "RvY_02407.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6680057 6680362 . + . gene_id "RvY_02407"; transcript_id "RvY_02407.1"; Scaffold001 rebuild transcript 6680531 6685963 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; annotation "hypothetical protein."; Pfam "[Cnd2] Condensin complex subunit 2"; Scaffold001 rebuild exon 6680531 6680763 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6680816 6680900 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6680955 6681389 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6681651 6681924 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6682539 6682657 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6682729 6682915 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6683022 6683244 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6683475 6684018 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6684206 6684394 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6684693 6685025 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6685292 6685546 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild exon 6685631 6685963 . + . gene_id "RvY_02408"; transcript_id "RvY_02408.1"; Scaffold001 rebuild transcript 6692052 6692219 . + . gene_id "RvY_02409"; transcript_id "RvY_02409.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6692052 6692219 . + . gene_id "RvY_02409"; transcript_id "RvY_02409.1"; Scaffold001 rebuild transcript 6694063 6695505 . - . gene_id "RvY_02410"; transcript_id "RvY_02410.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6694063 6694788 . - . gene_id "RvY_02410"; transcript_id "RvY_02410.1"; Scaffold001 rebuild exon 6695010 6695220 . - . gene_id "RvY_02410"; transcript_id "RvY_02410.1"; Scaffold001 rebuild exon 6695314 6695395 . - . gene_id "RvY_02410"; transcript_id "RvY_02410.1"; Scaffold001 rebuild exon 6695484 6695505 . - . gene_id "RvY_02410"; transcript_id "RvY_02410.1"; Scaffold001 rebuild transcript 6696075 6699111 . - . gene_id "RvY_02411"; transcript_id "RvY_02411.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6696075 6696500 . - . gene_id "RvY_02411"; transcript_id "RvY_02411.1"; Scaffold001 rebuild exon 6696641 6696927 . - . gene_id "RvY_02411"; transcript_id "RvY_02411.1"; Scaffold001 rebuild exon 6696998 6697508 . - . gene_id "RvY_02411"; transcript_id "RvY_02411.1"; Scaffold001 rebuild exon 6697780 6698690 . - . gene_id "RvY_02411"; transcript_id "RvY_02411.1"; Scaffold001 rebuild exon 6698757 6699111 . - . gene_id "RvY_02411"; transcript_id "RvY_02411.1"; Scaffold001 rebuild transcript 6701975 6722472 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; gene_name "FLNA"; annotation "filamin"; Pfam "[Filamin] Filamin/ABP280 repeat|(2)[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|(2)[Big_1] Bacterial Ig-like domain (group 1)|(1)[CAMSAP_CH] CAMSAP CH domain|(1)[CH] Calponin homology (CH) domain|[YtkA] YtkA-like"; CDD "(1)Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; KO "K04437"; Scaffold001 rebuild exon 6701975 6702374 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6704774 6704963 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6705274 6705556 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6705644 6705958 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6706207 6706494 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6706898 6707027 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6707796 6708107 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6708542 6708910 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6709162 6709536 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6709772 6709855 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6710158 6710295 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6710363 6710677 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6710986 6711419 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6711621 6711813 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6711895 6712032 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6712316 6712852 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6713177 6713350 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6713429 6713575 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6715790 6716011 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6716129 6716305 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6716636 6716931 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6717172 6717390 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6717700 6718242 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6718474 6718875 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6718959 6719520 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6719836 6720282 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6720404 6720832 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6721181 6721471 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6721540 6721689 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6721761 6721928 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild exon 6722147 6722472 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.1"; Scaffold001 rebuild transcript 6714331 6722472 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; gene_name "FLNA"; annotation "filamin"; Pfam "[Filamin] Filamin/ABP280 repeat|(2)[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|(2)[Big_1] Bacterial Ig-like domain (group 1)|(1)[CAMSAP_CH] CAMSAP CH domain|(1)[CH] Calponin homology (CH) domain|[YtkA] YtkA-like"; CDD "(1)Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; KO "K04437"; Scaffold001 rebuild exon 6714331 6714856 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6715790 6716011 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6716129 6716305 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6716636 6716931 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6717172 6717390 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6717700 6718242 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6718474 6718875 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6718959 6719520 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6719836 6720282 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6720404 6720832 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6721181 6721471 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6721540 6721689 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6721761 6721928 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild exon 6722147 6722472 . + . gene_id "RvY_02412"; transcript_id "RvY_02412.2"; Scaffold001 rebuild transcript 6713404 6713616 . - . gene_id "RvY_02413"; transcript_id "RvY_02413.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6713404 6713616 . - . gene_id "RvY_02413"; transcript_id "RvY_02413.1"; Scaffold001 rebuild transcript 6723006 6723872 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6723006 6723171 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.1"; Scaffold001 rebuild exon 6723344 6723511 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.1"; Scaffold001 rebuild exon 6723724 6723872 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.1"; Scaffold001 rebuild transcript 6723006 6723757 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6723006 6723171 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.2"; Scaffold001 rebuild exon 6723344 6723515 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.2"; Scaffold001 rebuild exon 6723724 6723757 . + . gene_id "RvY_02414"; transcript_id "RvY_02414.2"; Scaffold001 rebuild transcript 6725000 6725620 . - . gene_id "RvY_02415"; transcript_id "RvY_02415.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6725000 6725620 . - . gene_id "RvY_02415"; transcript_id "RvY_02415.1"; Scaffold001 rebuild transcript 6726764 6727962 . + . gene_id "RvY_02416"; transcript_id "RvY_02416.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6726764 6727013 . + . gene_id "RvY_02416"; transcript_id "RvY_02416.1"; Scaffold001 rebuild exon 6727169 6727243 . + . gene_id "RvY_02416"; transcript_id "RvY_02416.1"; Scaffold001 rebuild exon 6727384 6727671 . + . gene_id "RvY_02416"; transcript_id "RvY_02416.1"; Scaffold001 rebuild exon 6727727 6727962 . + . gene_id "RvY_02416"; transcript_id "RvY_02416.1"; Scaffold001 rebuild transcript 6728958 6730217 . + . gene_id "RvY_02417"; transcript_id "RvY_02417.1"; gene_name "RP-L18Ae"; annotation "60S ribosomal protein L18a"; Pfam "[Ribosomal_L18ae] Ribosomal L18ae/LX protein domain"; KO "K02882"; similar_genes "RL18A_HUMAN(e-value:2.0e-75;bit-score:280.0)"; Scaffold001 rebuild exon 6728958 6728975 . + . gene_id "RvY_02417"; transcript_id "RvY_02417.1"; Scaffold001 rebuild exon 6729237 6729416 . + . gene_id "RvY_02417"; transcript_id "RvY_02417.1"; Scaffold001 rebuild exon 6729501 6729630 . + . gene_id "RvY_02417"; transcript_id "RvY_02417.1"; Scaffold001 rebuild exon 6729929 6730038 . + . gene_id "RvY_02417"; transcript_id "RvY_02417.1"; Scaffold001 rebuild exon 6730119 6730217 . + . gene_id "RvY_02417"; transcript_id "RvY_02417.1"; Scaffold001 rebuild transcript 6730486 6731930 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; gene_name "K09140"; annotation "putative UPF0293 protein C1F3.04c"; Pfam "[RLI] Possible Fer4-like domain in RNase L inhibitor, RLI|[DUF367]"; CDD "Uncharacterized conserved protein [Function unknown]"; KO "K09140"; similar_genes "YD84_SCHPO(e-value:4.2e-33;bit-score:139.0)"; Scaffold001 rebuild exon 6730486 6730592 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; Scaffold001 rebuild exon 6730678 6730854 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; Scaffold001 rebuild exon 6730915 6731108 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; Scaffold001 rebuild exon 6731306 6731367 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; Scaffold001 rebuild exon 6731436 6731698 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; Scaffold001 rebuild exon 6731807 6731930 . - . gene_id "RvY_02418"; transcript_id "RvY_02418.1"; Scaffold001 rebuild transcript 6732165 6735370 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold001 rebuild exon 6732165 6732322 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6732384 6732601 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6733289 6733618 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6733686 6733733 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6734049 6734204 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6734288 6734416 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6734661 6734774 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6734971 6735064 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6735134 6735223 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild exon 6735292 6735370 . + . gene_id "RvY_02419"; transcript_id "RvY_02419.1"; Scaffold001 rebuild transcript 6735909 6736716 . - . gene_id "RvY_02420"; transcript_id "RvY_02420.1"; product "SAHS5"; annotation "SAHS_c4 | hypothetical protein."; Scaffold001 rebuild exon 6735909 6735968 . - . gene_id "RvY_02420"; transcript_id "RvY_02420.1"; Scaffold001 rebuild exon 6736037 6736144 . - . gene_id "RvY_02420"; transcript_id "RvY_02420.1"; Scaffold001 rebuild exon 6736243 6736415 . - . gene_id "RvY_02420"; transcript_id "RvY_02420.1"; Scaffold001 rebuild exon 6736484 6736606 . - . gene_id "RvY_02420"; transcript_id "RvY_02420.1"; Scaffold001 rebuild exon 6736683 6736716 . - . gene_id "RvY_02420"; transcript_id "RvY_02420.1"; Scaffold001 rebuild transcript 6737449 6738330 . - . gene_id "RvY_02421"; transcript_id "RvY_02421.1"; product "SAHS6"; annotation "SAHS_c5 | hypothetical protein."; Scaffold001 rebuild exon 6737449 6737511 . - . gene_id "RvY_02421"; transcript_id "RvY_02421.1"; Scaffold001 rebuild exon 6737599 6737706 . - . gene_id "RvY_02421"; transcript_id "RvY_02421.1"; Scaffold001 rebuild exon 6737786 6738099 . - . gene_id "RvY_02421"; transcript_id "RvY_02421.1"; Scaffold001 rebuild exon 6738297 6738330 . - . gene_id "RvY_02421"; transcript_id "RvY_02421.1"; Scaffold001 rebuild transcript 6739119 6740208 . + . gene_id "RvY_02422"; transcript_id "RvY_02422.1"; gene_name "NRK1"; annotation "nicotinamide riboside kinase 1 [EC:2.7.1.-]"; Pfam "[AAA_18] AAA domain|[AAA_17] AAA domain|[PRK] Phosphoribulokinase / Uridine kinase family"; CDD "Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside."; EC "EC2.7.1.-"; KO "K10524"; Scaffold001 rebuild exon 6739119 6739174 . + . gene_id "RvY_02422"; transcript_id "RvY_02422.1"; Scaffold001 rebuild exon 6739282 6739430 . + . gene_id "RvY_02422"; transcript_id "RvY_02422.1"; Scaffold001 rebuild exon 6739645 6739992 . + . gene_id "RvY_02422"; transcript_id "RvY_02422.1"; Scaffold001 rebuild exon 6740099 6740208 . + . gene_id "RvY_02422"; transcript_id "RvY_02422.1"; Scaffold001 rebuild transcript 6740893 6741656 . - . gene_id "RvY_02423"; transcript_id "RvY_02423.1"; product "SAHS1"; annotation "SAHS1 | hypothetical protein."; Scaffold001 rebuild exon 6740893 6740952 . - . gene_id "RvY_02423"; transcript_id "RvY_02423.1"; Scaffold001 rebuild exon 6741043 6741195 . - . gene_id "RvY_02423"; transcript_id "RvY_02423.1"; Scaffold001 rebuild exon 6741271 6741533 . - . gene_id "RvY_02423"; transcript_id "RvY_02423.1"; Scaffold001 rebuild exon 6741623 6741656 . - . gene_id "RvY_02423"; transcript_id "RvY_02423.1"; Scaffold001 rebuild transcript 6742638 6743455 . - . gene_id "RvY_02424"; transcript_id "RvY_02424.1"; product "SAHS7"; annotation "SAHS_c6 | hypothetical protein."; Scaffold001 rebuild exon 6742638 6742694 . - . gene_id "RvY_02424"; transcript_id "RvY_02424.1"; Scaffold001 rebuild exon 6742782 6742946 . - . gene_id "RvY_02424"; transcript_id "RvY_02424.1"; Scaffold001 rebuild exon 6743129 6743247 . - . gene_id "RvY_02424"; transcript_id "RvY_02424.1"; Scaffold001 rebuild exon 6743317 6743455 . - . gene_id "RvY_02424"; transcript_id "RvY_02424.1"; Scaffold001 rebuild transcript 6745072 6745484 . + . gene_id "RvY_02425"; transcript_id "RvY_02425.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6745072 6745208 . + . gene_id "RvY_02425"; transcript_id "RvY_02425.1"; Scaffold001 rebuild exon 6745274 6745484 . + . gene_id "RvY_02425"; transcript_id "RvY_02425.1"; Scaffold001 rebuild transcript 6745605 6745799 . - . gene_id "RvY_02426"; transcript_id "RvY_02426.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6745605 6745799 . - . gene_id "RvY_02426"; transcript_id "RvY_02426.1"; Scaffold001 rebuild transcript 6747188 6747716 . + . gene_id "RvY_02427"; transcript_id "RvY_02427.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6747188 6747475 . + . gene_id "RvY_02427"; transcript_id "RvY_02427.1"; Scaffold001 rebuild exon 6747690 6747716 . + . gene_id "RvY_02427"; transcript_id "RvY_02427.1"; Scaffold001 rebuild transcript 6748664 6750071 . - . gene_id "RvY_02428"; transcript_id "RvY_02428.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6748664 6748892 . - . gene_id "RvY_02428"; transcript_id "RvY_02428.1"; Scaffold001 rebuild exon 6748995 6749472 . - . gene_id "RvY_02428"; transcript_id "RvY_02428.1"; Scaffold001 rebuild exon 6749767 6749875 . - . gene_id "RvY_02428"; transcript_id "RvY_02428.1"; Scaffold001 rebuild exon 6749958 6750071 . - . gene_id "RvY_02428"; transcript_id "RvY_02428.1"; Scaffold001 rebuild transcript 6750642 6751501 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6750642 6750804 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.1"; Scaffold001 rebuild exon 6750870 6751005 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.1"; Scaffold001 rebuild exon 6751177 6751346 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.1"; Scaffold001 rebuild exon 6751407 6751501 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.1"; Scaffold001 rebuild transcript 6750866 6751582 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6750866 6751005 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.2"; Scaffold001 rebuild exon 6751177 6751346 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.2"; Scaffold001 rebuild exon 6751407 6751582 . - . gene_id "RvY_02429"; transcript_id "RvY_02429.2"; Scaffold001 rebuild transcript 6753339 6754237 . - . gene_id "RvY_02430"; transcript_id "RvY_02430.1"; product "SAHS8"; annotation "SAHS_c1 | hypothetical protein."; Scaffold001 rebuild exon 6753339 6753572 . - . gene_id "RvY_02430"; transcript_id "RvY_02430.1"; Scaffold001 rebuild exon 6753688 6753806 . - . gene_id "RvY_02430"; transcript_id "RvY_02430.1"; Scaffold001 rebuild exon 6753941 6754075 . - . gene_id "RvY_02430"; transcript_id "RvY_02430.1"; Scaffold001 rebuild exon 6754204 6754237 . - . gene_id "RvY_02430"; transcript_id "RvY_02430.1"; Scaffold001 rebuild transcript 6754916 6755824 . - . gene_id "RvY_02431"; transcript_id "RvY_02431.1"; product "SAHS2"; annotation "SAHS2 | hypothetical protein."; Scaffold001 rebuild exon 6754916 6755149 . - . gene_id "RvY_02431"; transcript_id "RvY_02431.1"; Scaffold001 rebuild exon 6755232 6755350 . - . gene_id "RvY_02431"; transcript_id "RvY_02431.1"; Scaffold001 rebuild exon 6755527 6755661 . - . gene_id "RvY_02431"; transcript_id "RvY_02431.1"; Scaffold001 rebuild exon 6755788 6755824 . - . gene_id "RvY_02431"; transcript_id "RvY_02431.1"; Scaffold001 rebuild transcript 6756376 6756782 . - . gene_id "RvY_02432"; transcript_id "RvY_02432.2"; product "SAHS9"; annotation "SAHS_c7 | hypothetical protein."; Scaffold001 rebuild exon 6756376 6756609 . - . gene_id "RvY_02432"; transcript_id "RvY_02432.2"; Scaffold001 rebuild exon 6756675 6756782 . - . gene_id "RvY_02432"; transcript_id "RvY_02432.2"; Scaffold001 rebuild transcript 6758680 6758895 . - . gene_id "RvY_02433"; transcript_id "RvY_02433.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6758680 6758895 . - . gene_id "RvY_02433"; transcript_id "RvY_02433.1"; Scaffold001 rebuild transcript 6758941 6759667 . + . gene_id "RvY_02434"; transcript_id "RvY_02434.1"; annotation "hypothetical protein."; Pfam "[Myb_DNA-bind_4] Myb/SANT-like DNA-binding domain"; Scaffold001 rebuild exon 6758941 6759208 . + . gene_id "RvY_02434"; transcript_id "RvY_02434.1"; Scaffold001 rebuild exon 6759390 6759667 . + . gene_id "RvY_02434"; transcript_id "RvY_02434.1"; Scaffold001 rebuild transcript 6760057 6760470 . - . gene_id "RvY_02435"; transcript_id "RvY_02435.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 6760057 6760216 . - . gene_id "RvY_02435"; transcript_id "RvY_02435.1"; Scaffold001 rebuild exon 6760301 6760470 . - . gene_id "RvY_02435"; transcript_id "RvY_02435.1"; Scaffold001 rebuild transcript 6760800 6761039 . - . gene_id "RvY_02436"; transcript_id "RvY_02436.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6760800 6761039 . - . gene_id "RvY_02436"; transcript_id "RvY_02436.1"; Scaffold001 rebuild transcript 6761726 6762211 . - . gene_id "RvY_02437"; transcript_id "RvY_02437.2"; product "SAHS10"; annotation "SAHS_c8 | hypothetical protein."; Scaffold001 rebuild exon 6761726 6761959 . - . gene_id "RvY_02437"; transcript_id "RvY_02437.2"; Scaffold001 rebuild exon 6762074 6762211 . - . gene_id "RvY_02437"; transcript_id "RvY_02437.2"; Scaffold001 rebuild transcript 6763200 6764203 . - . gene_id "RvY_02438"; transcript_id "RvY_02438.1"; product "SAHS11"; annotation "SAHS_c9 | hypothetical protein."; Scaffold001 rebuild exon 6763200 6763253 . - . gene_id "RvY_02438"; transcript_id "RvY_02438.1"; Scaffold001 rebuild exon 6763325 6763489 . - . gene_id "RvY_02438"; transcript_id "RvY_02438.1"; Scaffold001 rebuild exon 6763574 6763698 . - . gene_id "RvY_02438"; transcript_id "RvY_02438.1"; Scaffold001 rebuild exon 6763785 6763919 . - . gene_id "RvY_02438"; transcript_id "RvY_02438.1"; Scaffold001 rebuild exon 6764167 6764203 . - . gene_id "RvY_02438"; transcript_id "RvY_02438.1"; Scaffold001 rebuild transcript 6765418 6765816 . + . gene_id "RvY_02439"; transcript_id "RvY_02439.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6765418 6765816 . + . gene_id "RvY_02439"; transcript_id "RvY_02439.1"; Scaffold001 rebuild transcript 6767113 6770728 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; gene_name "(1)LIC"; annotation "(1)Acetylcholine receptor subunit beta-like 2(2)hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|(1)[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "(1)Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "(1)ACH4_DROME(e-value:7.4e-56;bit-score:215.0)(2)ACH1_MANSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold001 rebuild exon 6767113 6767316 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6767399 6767443 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6767519 6767619 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6767689 6767697 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6767891 6768017 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6768282 6768440 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6768597 6768693 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6768915 6768994 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6769070 6769129 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6769228 6769251 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6769334 6769420 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6769484 6769840 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild exon 6770513 6770728 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.1"; Scaffold001 rebuild transcript 6768425 6770728 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; gene_name "(1)LIC"; annotation "(1)Acetylcholine receptor subunit beta-like 2(2)hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|(1)[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "(1)Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "(1)ACH4_DROME(e-value:7.4e-56;bit-score:215.0)(2)ACH1_MANSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold001 rebuild exon 6768425 6768440 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild exon 6768597 6768693 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild exon 6768915 6768994 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild exon 6769070 6769251 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild exon 6769334 6769420 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild exon 6769484 6769840 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild exon 6770513 6770728 . + . gene_id "RvY_02440"; transcript_id "RvY_02440.2"; Scaffold001 rebuild transcript 6771236 6788893 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; annotation "hypothetical protein."; similar_genes "UNC80_CAEEL(e-value:5.7e-22;bit-score:102.0)"; Scaffold001 rebuild exon 6771236 6772242 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6772300 6772538 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6772817 6773360 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6773550 6773812 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6773975 6774915 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6775126 6775839 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6775971 6776158 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6776221 6776370 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6776459 6776657 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6776737 6776947 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6777008 6777385 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6777481 6777908 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6778126 6778454 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6778622 6779030 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6779242 6779612 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6779949 6780314 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6780490 6780946 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6781219 6781295 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6781417 6781697 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6782125 6782584 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6782854 6783602 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6783815 6784308 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6784541 6784969 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6787031 6787079 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild exon 6788751 6788893 . - . gene_id "RvY_02441"; transcript_id "RvY_02441.1"; Scaffold001 rebuild transcript 6795727 6797541 . - . gene_id "RvY_02442"; transcript_id "RvY_02442.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6795727 6796853 . - . gene_id "RvY_02442"; transcript_id "RvY_02442.1"; Scaffold001 rebuild exon 6796935 6797541 . - . gene_id "RvY_02442"; transcript_id "RvY_02442.1"; Scaffold001 rebuild transcript 6798406 6800526 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; gene_name "PTZ00122"; annotation "hypothetical protein."; Pfam "[His_Phos_1] Histidine phosphatase superfamily (branch 1)"; CDD "phosphoglycerate mutase; Provisional"; Scaffold001 rebuild exon 6798406 6798622 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild exon 6798700 6798824 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild exon 6798909 6799087 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild exon 6799167 6799292 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild exon 6799389 6799571 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild exon 6799652 6799853 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild exon 6800002 6800526 . - . gene_id "RvY_02443"; transcript_id "RvY_02443.1"; Scaffold001 rebuild transcript 6803973 6804371 . + . gene_id "RvY_02444"; transcript_id "RvY_02444.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6803973 6804371 . + . gene_id "RvY_02444"; transcript_id "RvY_02444.1"; Scaffold001 rebuild transcript 6805590 6816358 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; gene_name "GPC4"; annotation "glypican 4 (K-glypican)"; Pfam "[Glypican]"; KO "K08110"; similar_genes "GPC4_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold001 rebuild exon 6805590 6805983 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild exon 6811724 6811882 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild exon 6812613 6813176 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild exon 6814770 6814900 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild exon 6815079 6815389 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild exon 6815454 6815641 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild exon 6815850 6816358 . + . gene_id "RvY_02445"; transcript_id "RvY_02445.1"; Scaffold001 rebuild transcript 6808441 6808680 . - . gene_id "RvY_02446"; transcript_id "RvY_02446.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6808441 6808680 . - . gene_id "RvY_02446"; transcript_id "RvY_02446.1"; Scaffold001 rebuild transcript 6818552 6820803 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6818552 6818858 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild exon 6819201 6819326 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild exon 6819393 6819478 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild exon 6819539 6819684 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild exon 6819814 6819918 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild exon 6819979 6820123 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild exon 6820186 6820803 . - . gene_id "RvY_02447"; transcript_id "RvY_02447.1"; Scaffold001 rebuild transcript 6820494 6827301 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; gene_name "HERC4"; annotation "putative Probable E3 ubiquitin-protein ligase HERC4"; Pfam "[RCC1_2] Regulator of chromosome condensation (RCC1) repeat|[RCC1] Regulator of chromosome condensation (RCC1) repeat|[HECT] HECT-domain (ubiquitin-transferase)"; CDD "HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10615"; similar_genes "HERC4_HUMAN(e-value:3.5e-45;bit-score:179.0)"; Scaffold001 rebuild exon 6820494 6820852 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6821587 6821882 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6821944 6822106 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6822364 6822440 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6822592 6822627 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6822700 6822864 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6823056 6823828 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6824025 6824288 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6824594 6824842 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6824921 6825013 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6825229 6825430 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6825716 6826052 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6826341 6826674 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6826904 6827059 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild exon 6827140 6827301 . + . gene_id "RvY_02448"; transcript_id "RvY_02448.1"; Scaffold001 rebuild transcript 6827751 6828794 . + . gene_id "RvY_02449"; transcript_id "RvY_02449.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6827751 6827993 . + . gene_id "RvY_02449"; transcript_id "RvY_02449.1"; Scaffold001 rebuild exon 6828065 6828351 . + . gene_id "RvY_02449"; transcript_id "RvY_02449.1"; Scaffold001 rebuild exon 6828411 6828524 . + . gene_id "RvY_02449"; transcript_id "RvY_02449.1"; Scaffold001 rebuild exon 6828581 6828794 . + . gene_id "RvY_02449"; transcript_id "RvY_02449.1"; Scaffold001 rebuild transcript 6829797 6833147 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; gene_name "ABCF2"; annotation "ATP-binding cassette sub-family F member 2"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_tran_2] ABC transporter|[AAA_29] P-loop containing region of AAA domain|[AAA_18] AAA domain|[DUF258] Protein of unknown function, DUF258|[AAA_17] AAA domain|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]"; KO "K06185"; similar_genes "ABCF2_BOVIN(e-value:2.4e-188;bit-score:655.0)"; Scaffold001 rebuild exon 6829797 6830147 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6830426 6830716 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6831048 6831368 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6831580 6831615 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6831684 6831743 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6831820 6831922 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6831999 6832269 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6832461 6832856 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild exon 6832973 6833147 . - . gene_id "RvY_02450"; transcript_id "RvY_02450.1"; Scaffold001 rebuild transcript 6833955 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; annotation "hypothetical protein."; Pfam "[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; similar_genes "LENG8_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 6833955 6834244 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6834325 6834370 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6834569 6835022 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6835208 6835499 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6835574 6835714 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6835984 6836298 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6836738 6837423 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6837605 6837812 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild exon 6838081 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.1"; Scaffold001 rebuild transcript 6833320 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; annotation "hypothetical protein."; Pfam "[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; similar_genes "LENG8_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 6833320 6833626 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6833826 6833938 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6835291 6835499 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6835574 6835714 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6835984 6836298 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6836738 6837423 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6837605 6837812 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild exon 6838081 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.2"; Scaffold001 rebuild transcript 6833479 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; annotation "hypothetical protein."; Pfam "[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; similar_genes "LENG8_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 6833479 6833626 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6833826 6833938 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6835291 6835499 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6835574 6835714 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6835984 6836298 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6836738 6837423 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6837605 6837812 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild exon 6838081 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.3"; Scaffold001 rebuild transcript 6833491 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; annotation "hypothetical protein."; Pfam "[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; similar_genes "LENG8_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold001 rebuild exon 6833491 6833626 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6833826 6833938 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6835291 6835499 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6835574 6835714 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6835984 6836298 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6836738 6837423 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6837605 6837812 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild exon 6838081 6838378 . + . gene_id "RvY_02451"; transcript_id "RvY_02451.4"; Scaffold001 rebuild transcript 6839417 6840288 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6839417 6839466 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.1"; Scaffold001 rebuild exon 6839537 6839619 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.1"; Scaffold001 rebuild exon 6839697 6839848 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.1"; Scaffold001 rebuild exon 6839916 6840002 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.1"; Scaffold001 rebuild exon 6840082 6840288 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.1"; Scaffold001 rebuild transcript 6839417 6840092 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6839417 6839466 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.2"; Scaffold001 rebuild exon 6839537 6839619 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.2"; Scaffold001 rebuild exon 6839697 6839848 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.2"; Scaffold001 rebuild exon 6839916 6840092 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.2"; Scaffold001 rebuild transcript 6839404 6840092 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6839404 6839466 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.3"; Scaffold001 rebuild exon 6839537 6839619 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.3"; Scaffold001 rebuild exon 6839697 6839848 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.3"; Scaffold001 rebuild exon 6839916 6840002 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.3"; Scaffold001 rebuild exon 6840082 6840092 . + . gene_id "RvY_02452"; transcript_id "RvY_02452.3"; Scaffold001 rebuild transcript 6841701 6847784 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6841701 6841804 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6841890 6842317 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6842579 6842914 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6844862 6845127 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6845949 6846251 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6846335 6846748 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6846935 6847020 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6847128 6847191 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild exon 6847542 6847784 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.1"; Scaffold001 rebuild transcript 6841701 6847698 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6841701 6841804 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6841890 6842317 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6842579 6842914 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6844862 6845127 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6845949 6846251 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6846335 6846748 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6846935 6847020 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6847128 6847259 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild exon 6847542 6847698 . + . gene_id "RvY_02453"; transcript_id "RvY_02453.2"; Scaffold001 rebuild transcript 6848154 6848877 . - . gene_id "RvY_02454"; transcript_id "RvY_02454.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 6848154 6848457 . - . gene_id "RvY_02454"; transcript_id "RvY_02454.1"; Scaffold001 rebuild exon 6848550 6848643 . - . gene_id "RvY_02454"; transcript_id "RvY_02454.1"; Scaffold001 rebuild exon 6848865 6848877 . - . gene_id "RvY_02454"; transcript_id "RvY_02454.1"; Scaffold001 rebuild transcript 6849716 6850456 . - . gene_id "RvY_02455"; transcript_id "RvY_02455.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold001 rebuild exon 6849716 6849834 . - . gene_id "RvY_02455"; transcript_id "RvY_02455.1"; Scaffold001 rebuild exon 6849951 6850098 . - . gene_id "RvY_02455"; transcript_id "RvY_02455.1"; Scaffold001 rebuild exon 6850175 6850245 . - . gene_id "RvY_02455"; transcript_id "RvY_02455.1"; Scaffold001 rebuild exon 6850345 6850456 . - . gene_id "RvY_02455"; transcript_id "RvY_02455.1"; Scaffold001 rebuild transcript 6851267 6853288 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; gene_name "Annexin"; annotation "hypothetical protein."; Pfam "[Annexin]"; CDD "Annexin. This family of annexins also includes giardin that has been shown to function as an annexin."; Scaffold001 rebuild exon 6851267 6851362 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6851435 6851616 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6851700 6851943 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6852073 6852158 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6852306 6852396 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6852459 6852584 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6852654 6852748 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild exon 6852817 6853288 . - . gene_id "RvY_02456"; transcript_id "RvY_02456.1"; Scaffold001 rebuild transcript 6853877 6854218 . + . gene_id "RvY_02457"; transcript_id "RvY_02457.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6853877 6854218 . + . gene_id "RvY_02457"; transcript_id "RvY_02457.1"; Scaffold001 rebuild transcript 6854948 6855379 . - . gene_id "RvY_02458"; transcript_id "RvY_02458.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6854948 6855379 . - . gene_id "RvY_02458"; transcript_id "RvY_02458.1"; Scaffold001 rebuild transcript 6855222 6855488 . + . gene_id "RvY_02459"; transcript_id "RvY_02459.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6855222 6855488 . + . gene_id "RvY_02459"; transcript_id "RvY_02459.1"; Scaffold001 rebuild transcript 6856999 6857340 . + . gene_id "RvY_02460"; transcript_id "RvY_02460.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6856999 6857340 . + . gene_id "RvY_02460"; transcript_id "RvY_02460.1"; Scaffold001 rebuild transcript 6859232 6859564 . - . gene_id "RvY_02461"; transcript_id "RvY_02461.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6859232 6859564 . - . gene_id "RvY_02461"; transcript_id "RvY_02461.1"; Scaffold001 rebuild transcript 6859941 6861333 . + . gene_id "RvY_02462"; transcript_id "RvY_02462.1"; annotation "hypothetical protein."; Pfam "[Scramblase]"; similar_genes "PLS1_RAT(e-value:3.7e-17;bit-score:86.0)"; Scaffold001 rebuild exon 6859941 6860183 . + . gene_id "RvY_02462"; transcript_id "RvY_02462.1"; Scaffold001 rebuild exon 6860536 6860700 . + . gene_id "RvY_02462"; transcript_id "RvY_02462.1"; Scaffold001 rebuild exon 6860808 6860969 . + . gene_id "RvY_02462"; transcript_id "RvY_02462.1"; Scaffold001 rebuild exon 6861202 6861333 . + . gene_id "RvY_02462"; transcript_id "RvY_02462.1"; Scaffold001 rebuild transcript 6863342 6863782 . - . gene_id "RvY_02463"; transcript_id "RvY_02463.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6863342 6863782 . - . gene_id "RvY_02463"; transcript_id "RvY_02463.1"; Scaffold001 rebuild transcript 6863995 6864312 . + . gene_id "RvY_02464"; transcript_id "RvY_02464.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6863995 6864312 . + . gene_id "RvY_02464"; transcript_id "RvY_02464.1"; Scaffold001 rebuild transcript 6864694 6865497 . - . gene_id "RvY_02465"; transcript_id "RvY_02465.1"; gene_name "PKS_AT"; annotation "hypothetical protein."; Pfam "[Acyl_transf_1] Acyl transferase domain"; CDD "Acyl transferase domain in polyketide synthase (PKS) enzymes."; Scaffold001 rebuild exon 6864694 6865395 . - . gene_id "RvY_02465"; transcript_id "RvY_02465.1"; Scaffold001 rebuild exon 6865456 6865497 . - . gene_id "RvY_02465"; transcript_id "RvY_02465.1"; Scaffold001 rebuild transcript 6865666 6866046 . - . gene_id "RvY_02466"; transcript_id "RvY_02466.1"; gene_name "PKS_AT"; annotation "hypothetical protein."; Pfam "[Acyl_transf_1] Acyl transferase domain"; CDD "Acyl transferase domain in polyketide synthase (PKS) enzymes."; Scaffold001 rebuild exon 6865666 6866046 . - . gene_id "RvY_02466"; transcript_id "RvY_02466.1"; Scaffold001 rebuild transcript 6866251 6866607 . - . gene_id "RvY_02467"; transcript_id "RvY_02467.1"; gene_name "PKS_KS"; annotation "hypothetical protein."; CDD "Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The Scaffold001 rebuild exon 6866251 6866607 . - . gene_id "RvY_02467"; transcript_id "RvY_02467.1"; Scaffold001 rebuild transcript 6866963 6867753 . + . gene_id "RvY_02468"; transcript_id "RvY_02468.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6866963 6867080 . + . gene_id "RvY_02468"; transcript_id "RvY_02468.1"; Scaffold001 rebuild exon 6867152 6867753 . + . gene_id "RvY_02468"; transcript_id "RvY_02468.1"; Scaffold001 rebuild transcript 6868147 6868438 . + . gene_id "RvY_02469"; transcript_id "RvY_02469.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6868147 6868321 . + . gene_id "RvY_02469"; transcript_id "RvY_02469.1"; Scaffold001 rebuild exon 6868431 6868438 . + . gene_id "RvY_02469"; transcript_id "RvY_02469.1"; Scaffold001 rebuild transcript 6868727 6869065 . - . gene_id "RvY_02470"; transcript_id "RvY_02470.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6868727 6869065 . - . gene_id "RvY_02470"; transcript_id "RvY_02470.1"; Scaffold001 rebuild transcript 6869136 6871744 . - . gene_id "RvY_02471"; transcript_id "RvY_02471.1"; gene_name "PKS_KS"; annotation "hypothetical protein."; Pfam "[ketoacyl-synt] Beta-ketoacyl synthase, N-terminal domain"; CDD "Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The Scaffold001 rebuild exon 6869136 6869152 . - . gene_id "RvY_02471"; transcript_id "RvY_02471.1"; Scaffold001 rebuild exon 6869841 6870242 . - . gene_id "RvY_02471"; transcript_id "RvY_02471.1"; Scaffold001 rebuild exon 6871284 6871535 . - . gene_id "RvY_02471"; transcript_id "RvY_02471.1"; Scaffold001 rebuild exon 6871609 6871744 . - . gene_id "RvY_02471"; transcript_id "RvY_02471.1"; Scaffold001 rebuild transcript 6872330 6872735 . + . gene_id "RvY_02472"; transcript_id "RvY_02472.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6872330 6872364 . + . gene_id "RvY_02472"; transcript_id "RvY_02472.1"; Scaffold001 rebuild exon 6872612 6872735 . + . gene_id "RvY_02472"; transcript_id "RvY_02472.1"; Scaffold001 rebuild transcript 6872621 6877361 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain"; Scaffold001 rebuild exon 6872621 6872943 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6873234 6873639 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6873724 6873907 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6873974 6874256 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6874325 6874474 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6874537 6874848 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6874958 6875189 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6875259 6875710 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6875964 6876217 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6876295 6876427 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6876516 6876815 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild exon 6877175 6877361 . - . gene_id "RvY_02473"; transcript_id "RvY_02473.1"; Scaffold001 rebuild transcript 6878786 6879654 . + . gene_id "RvY_02474"; transcript_id "RvY_02474.1"; gene_name "FKBP14"; annotation "putative FK506-binding protein 2B"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; EC "EC5.2.1.8"; KO "K09577"; similar_genes "FKB2B_RHIOR(e-value:4.1e-31;bit-score:132.0)"; Scaffold001 rebuild exon 6878786 6878976 . + . gene_id "RvY_02474"; transcript_id "RvY_02474.1"; Scaffold001 rebuild exon 6879138 6879531 . + . gene_id "RvY_02474"; transcript_id "RvY_02474.1"; Scaffold001 rebuild exon 6879601 6879654 . + . gene_id "RvY_02474"; transcript_id "RvY_02474.1"; Scaffold001 rebuild transcript 6879898 6880791 . - . gene_id "RvY_02475"; transcript_id "RvY_02475.1"; annotation "hypothetical protein."; Pfam "[Folate_rec] Folate receptor family"; Scaffold001 rebuild exon 6879898 6880080 . - . gene_id "RvY_02475"; transcript_id "RvY_02475.1"; Scaffold001 rebuild exon 6880335 6880428 . - . gene_id "RvY_02475"; transcript_id "RvY_02475.1"; Scaffold001 rebuild exon 6880502 6880791 . - . gene_id "RvY_02475"; transcript_id "RvY_02475.1"; Scaffold001 rebuild transcript 6881170 6882341 . - . gene_id "RvY_02476"; transcript_id "RvY_02476.1"; gene_name "p23_melusin_like"; annotation "hypothetical protein."; Pfam "[CHORD]|[CS]"; CDD "p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains."; similar_genes "CHRD1_MOUSE(e-value:1.1e-20;bit-score:98.0)"; Scaffold001 rebuild exon 6881170 6881253 . - . gene_id "RvY_02476"; transcript_id "RvY_02476.1"; Scaffold001 rebuild exon 6881311 6881680 . - . gene_id "RvY_02476"; transcript_id "RvY_02476.1"; Scaffold001 rebuild exon 6881854 6882341 . - . gene_id "RvY_02476"; transcript_id "RvY_02476.1"; Scaffold001 rebuild transcript 6882378 6882593 . - . gene_id "RvY_02477"; transcript_id "RvY_02477.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6882378 6882593 . - . gene_id "RvY_02477"; transcript_id "RvY_02477.1"; Scaffold001 rebuild transcript 6883737 6885113 . - . gene_id "RvY_02478"; transcript_id "RvY_02478.1"; gene_name "GPKOW"; annotation "G patch domain and KOW motifs-containing protein"; Pfam "[G-patch_2] DExH-box splicing factor binding site|[G-patch]|[KOW] KOW motif"; CDD "glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins."; KO "K13101"; similar_genes "GPKOW_DANRE(e-value:7.6e-24;bit-score:108.0)"; Scaffold001 rebuild exon 6883737 6884227 . - . gene_id "RvY_02478"; transcript_id "RvY_02478.1"; Scaffold001 rebuild exon 6884447 6885113 . - . gene_id "RvY_02478"; transcript_id "RvY_02478.1"; Scaffold001 rebuild transcript 6885941 6886625 . + . gene_id "RvY_02479"; transcript_id "RvY_02479.1"; gene_name "RP-L44e"; annotation "putative 60S ribosomal protein L44"; Pfam "[Ribosomal_L44] Ribosomal protein L44"; CDD "60S ribosomal protein L44; Provisional"; KO "K02929"; similar_genes "RL44_BRUMA(e-value:3.5e-45;bit-score:179.0)"; Scaffold001 rebuild exon 6885941 6885943 . + . gene_id "RvY_02479"; transcript_id "RvY_02479.1"; Scaffold001 rebuild exon 6886019 6886130 . + . gene_id "RvY_02479"; transcript_id "RvY_02479.1"; Scaffold001 rebuild exon 6886324 6886508 . + . gene_id "RvY_02479"; transcript_id "RvY_02479.1"; Scaffold001 rebuild exon 6886605 6886625 . + . gene_id "RvY_02479"; transcript_id "RvY_02479.1"; Scaffold001 rebuild transcript 6887052 6888632 . - . gene_id "RvY_02480"; transcript_id "RvY_02480.1"; gene_name "HDAC3"; annotation "Histone deacetylase 3"; Pfam "[Hist_deacetyl] Histone deacetylase domain"; CDD "histone deacetylase; Provisional"; EC "EC3.5.1.98"; KO "K11404"; similar_genes "HDAC3_XENLA(e-value:2.4e-65;bit-score:246.0)"; Scaffold001 rebuild exon 6887052 6887950 . - . gene_id "RvY_02480"; transcript_id "RvY_02480.1"; Scaffold001 rebuild exon 6888155 6888632 . - . gene_id "RvY_02480"; transcript_id "RvY_02480.1"; Scaffold001 rebuild transcript 6891049 6894989 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; gene_name "CNOT10"; annotation "CCR4-NOT transcription complex subunit 10"; Pfam "[TPR_12] Tetratricopeptide repeat|[TPR_11] TPR repeat"; KO "K12607"; Scaffold001 rebuild exon 6891049 6891330 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6891437 6891587 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6891652 6891713 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6891785 6891952 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6892027 6892110 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6892382 6892888 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6893251 6893717 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6894026 6894333 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6894549 6894679 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild exon 6894768 6894989 . + . gene_id "RvY_02481"; transcript_id "RvY_02481.1"; Scaffold001 rebuild transcript 6895557 6897159 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.1"; annotation "hypothetical protein."; Pfam "[DHC_N1] Dynein heavy chain, N-terminal region 1"; Scaffold001 rebuild exon 6895557 6895958 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.1"; Scaffold001 rebuild exon 6896257 6896462 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.1"; Scaffold001 rebuild exon 6896540 6896729 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.1"; Scaffold001 rebuild exon 6896800 6897159 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.1"; Scaffold001 rebuild transcript 6895557 6896466 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.2"; annotation "hypothetical protein."; Pfam "[DHC_N1] Dynein heavy chain, N-terminal region 1"; Scaffold001 rebuild exon 6895557 6895958 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.2"; Scaffold001 rebuild exon 6896257 6896466 . + . gene_id "RvY_02482"; transcript_id "RvY_02482.2"; Scaffold001 rebuild transcript 6898132 6910006 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; annotation "(1)Dynein beta chain, ciliary(2)Dynein heavy chain 17, axonemal"; Pfam "(2)[Dynein_heavy] Dynein heavy chain and region D6 of dynein motor|[MT] Microtubule-binding stalk of dynein motor|(2)[AAA_9] ATP-binding dynein motor region D5|(1)[AAA_16] AAA ATPase domain|[AAA_7] P-loop containing dynein motor region D3|[AAA_8] P-loop containing dynein motor region D4|(1)[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|(1)[AAA] ATPase family associated with various cellular activities (AAA)|(1)[AAA_17] AAA domain|(1)[AAA_30] AAA domain|(1)[DHC_N2] Dynein heavy chain, N-terminal region 2|(1)[AAA_6] Hydrolytic ATP binding site of dynein motor region D1"; similar_genes "(1)DYHC_TRIGR(e-value:3.9e-286;bit-score:980.0)(2)DYH17_HUMAN(e-value:2.7e-202;bit-score:701.0)"; Scaffold001 rebuild exon 6898132 6898313 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6898892 6899021 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6899093 6899760 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6900045 6900408 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6900475 6900698 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6900764 6900986 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6901078 6901194 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6901269 6901608 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6901677 6901794 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6901900 6902286 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6902517 6903000 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6903231 6903550 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6903654 6904017 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6904094 6904325 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6904391 6904443 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6904506 6904635 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6904919 6905641 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6905782 6905821 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6905914 6906196 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6906264 6906437 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6906554 6906862 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6906930 6907097 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6907180 6907419 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6907495 6907850 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6907918 6908080 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6908148 6908414 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6908494 6908655 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6908841 6909212 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6909499 6909621 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild exon 6909692 6910006 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.1"; Scaffold001 rebuild transcript 6905326 6918011 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; annotation "(1)Dynein beta chain, ciliary(2)Dynein heavy chain 17, axonemal"; Pfam "(2)[Dynein_heavy] Dynein heavy chain and region D6 of dynein motor|[MT] Microtubule-binding stalk of dynein motor|(2)[AAA_9] ATP-binding dynein motor region D5|(1)[AAA_16] AAA ATPase domain|[AAA_7] P-loop containing dynein motor region D3|[AAA_8] P-loop containing dynein motor region D4|(1)[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|(1)[AAA] ATPase family associated with various cellular activities (AAA)|(1)[AAA_17] AAA domain|(1)[AAA_30] AAA domain|(1)[DHC_N2] Dynein heavy chain, N-terminal region 2|(1)[AAA_6] Hydrolytic ATP binding site of dynein motor region D1"; similar_genes "(1)DYHC_TRIGR(e-value:3.9e-286;bit-score:980.0)(2)DYH17_HUMAN(e-value:2.7e-202;bit-score:701.0)"; Scaffold001 rebuild exon 6905326 6905641 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6905782 6905821 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6905914 6906196 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6906264 6906437 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6906554 6906862 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6906930 6907097 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6907180 6907419 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6907495 6907850 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6907918 6908080 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6908148 6908414 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6908494 6908655 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6908841 6909212 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6909499 6909621 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6909692 6909996 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6910069 6910310 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6910394 6910581 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6910787 6911193 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6911336 6911768 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6911841 6912041 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6912330 6912646 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6912706 6912982 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6915834 6916373 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6916679 6917258 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6917474 6917877 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild exon 6917952 6918011 . + . gene_id "RvY_02483"; transcript_id "RvY_02483.2"; Scaffold001 rebuild transcript 6913045 6914093 . - . gene_id "RvY_02484"; transcript_id "RvY_02484.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6913045 6913698 . - . gene_id "RvY_02484"; transcript_id "RvY_02484.1"; Scaffold001 rebuild exon 6913775 6913894 . - . gene_id "RvY_02484"; transcript_id "RvY_02484.1"; Scaffold001 rebuild exon 6914028 6914093 . - . gene_id "RvY_02484"; transcript_id "RvY_02484.1"; Scaffold001 rebuild transcript 6914097 6914948 . - . gene_id "RvY_02485"; transcript_id "RvY_02485.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 6914097 6914374 . - . gene_id "RvY_02485"; transcript_id "RvY_02485.1"; Scaffold001 rebuild exon 6914630 6914948 . - . gene_id "RvY_02485"; transcript_id "RvY_02485.1"; Scaffold001 rebuild transcript 6917948 6918157 . - . gene_id "RvY_02486"; transcript_id "RvY_02486.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6917948 6918157 . - . gene_id "RvY_02486"; transcript_id "RvY_02486.1"; Scaffold001 rebuild transcript 6918323 6919351 . - . gene_id "RvY_02487"; transcript_id "RvY_02487.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6918323 6918423 . - . gene_id "RvY_02487"; transcript_id "RvY_02487.1"; Scaffold001 rebuild exon 6918501 6918549 . - . gene_id "RvY_02487"; transcript_id "RvY_02487.1"; Scaffold001 rebuild exon 6918640 6918690 . - . gene_id "RvY_02487"; transcript_id "RvY_02487.1"; Scaffold001 rebuild exon 6918834 6918923 . - . gene_id "RvY_02487"; transcript_id "RvY_02487.1"; Scaffold001 rebuild exon 6918992 6919351 . - . gene_id "RvY_02487"; transcript_id "RvY_02487.1"; Scaffold001 rebuild transcript 6919760 6922655 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; gene_name "POLL"; annotation "putative DNA polymerase lambda"; Pfam "[DNA_pol_lambd_f] Fingers domain of DNA polymerase lambda"; CDD "Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this family."; EC "EC2.7.7.7|EC4.2.99.-"; KO "K03512"; similar_genes "DPOLL_MACFA(e-value:2.7e-28;bit-score:123.0)"; Scaffold001 rebuild exon 6919760 6919874 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6919952 6920316 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6920574 6920921 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6921004 6921081 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6921144 6921251 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6921315 6921497 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6921778 6922075 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6922147 6922235 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6922326 6922487 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild exon 6922545 6922655 . + . gene_id "RvY_02488"; transcript_id "RvY_02488.1"; Scaffold001 rebuild transcript 6923076 6928477 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; gene_name "MAN2A"; annotation "Alpha-mannosidase 2x"; Pfam "[Alpha-mann_mid] Alpha mannosidase, middle domain|[Glyco_hydro_38C] Glycosyl hydrolases family 38 C-terminal domain|[Glyco_hydro_38] Glycosyl hydrolases family 38 N-terminal domain"; EC "EC3.2.1.114"; KO "K01231"; similar_genes "MA2A2_HUMAN(e-value:8.7e-59;bit-score:224.0)"; Scaffold001 rebuild exon 6923076 6923760 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6924076 6924446 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6924512 6924634 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6924832 6925086 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6925217 6925754 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6926170 6926360 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6926446 6926623 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6926682 6927179 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6927318 6927489 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6927560 6927707 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild exon 6927989 6928477 . - . gene_id "RvY_02489"; transcript_id "RvY_02489.1"; Scaffold001 rebuild transcript 6928961 6929341 . - . gene_id "RvY_02490"; transcript_id "RvY_02490.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6928961 6929341 . - . gene_id "RvY_02490"; transcript_id "RvY_02490.1"; Scaffold001 rebuild transcript 6929402 6931305 . - . gene_id "RvY_02491"; transcript_id "RvY_02491.1"; gene_name "CDC14"; annotation "putative Dual specificity protein phosphatase CDC14B"; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "protein tyrosine phosphatase; Provisional"; EC "EC3.1.3.48"; KO "K06639"; similar_genes "CC14B_MOUSE(e-value:9.3e-50;bit-score:194.0)"; Scaffold001 rebuild exon 6929402 6929884 . - . gene_id "RvY_02491"; transcript_id "RvY_02491.1"; Scaffold001 rebuild exon 6930051 6930357 . - . gene_id "RvY_02491"; transcript_id "RvY_02491.1"; Scaffold001 rebuild exon 6930662 6931305 . - . gene_id "RvY_02491"; transcript_id "RvY_02491.1"; Scaffold001 rebuild transcript 6931552 6931872 . + . gene_id "RvY_02492"; transcript_id "RvY_02492.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6931552 6931872 . + . gene_id "RvY_02492"; transcript_id "RvY_02492.1"; Scaffold001 rebuild transcript 6932768 6934639 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; gene_name "RecQ"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain"; CDD "Superfamily II DNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "RECQ4_MOUSE(e-value:5.9e-09;bit-score:59.0)"; Scaffold001 rebuild exon 6932768 6932881 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6933098 6933333 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6933397 6933662 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6933730 6933888 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6933955 6934061 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6934128 6934212 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6934278 6934380 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild exon 6934477 6934639 . + . gene_id "RvY_02493"; transcript_id "RvY_02493.1"; Scaffold001 rebuild transcript 6935119 6936211 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6935119 6935167 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.1"; Scaffold001 rebuild exon 6935240 6935473 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.1"; Scaffold001 rebuild exon 6935724 6935981 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.1"; Scaffold001 rebuild exon 6936123 6936211 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.1"; Scaffold001 rebuild transcript 6935961 6936332 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6935961 6936332 . - . gene_id "RvY_02494"; transcript_id "RvY_02494.2"; Scaffold001 rebuild transcript 6936374 6937079 . - . gene_id "RvY_02495"; transcript_id "RvY_02495.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6936374 6936452 . - . gene_id "RvY_02495"; transcript_id "RvY_02495.1"; Scaffold001 rebuild exon 6936546 6936672 . - . gene_id "RvY_02495"; transcript_id "RvY_02495.1"; Scaffold001 rebuild exon 6936980 6937079 . - . gene_id "RvY_02495"; transcript_id "RvY_02495.1"; Scaffold001 rebuild transcript 6937531 6939016 . + . gene_id "RvY_02496"; transcript_id "RvY_02496.1"; gene_name "RNase_Z"; annotation "hypothetical protein."; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Lactamase_B_2] Beta-lactamase superfamily domain"; CDD "ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs HMM TIGR02649, are designated ribonuclease BN."; Scaffold001 rebuild exon 6937531 6937669 . + . gene_id "RvY_02496"; transcript_id "RvY_02496.1"; Scaffold001 rebuild exon 6937742 6938075 . + . gene_id "RvY_02496"; transcript_id "RvY_02496.1"; Scaffold001 rebuild exon 6938452 6939016 . + . gene_id "RvY_02496"; transcript_id "RvY_02496.1"; Scaffold001 rebuild transcript 6943656 6951998 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; gene_name "ARHGEF4"; annotation "putative Rho guanine nucleotide exchange factor 9"; Pfam "[PH]|[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; KO "K05769"; similar_genes "ARHG9_RAT(e-value:6.3e-34;bit-score:142.0)"; Scaffold001 rebuild exon 6943656 6944678 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; Scaffold001 rebuild exon 6948880 6949325 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; Scaffold001 rebuild exon 6949609 6950195 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; Scaffold001 rebuild exon 6950518 6951063 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; Scaffold001 rebuild exon 6951323 6951766 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; Scaffold001 rebuild exon 6951841 6951998 . + . gene_id "RvY_02497"; transcript_id "RvY_02497.1"; Scaffold001 rebuild transcript 6952396 6953202 . - . gene_id "RvY_02498"; transcript_id "RvY_02498.1"; gene_name "RP-L35Ae"; annotation "large subunit ribosomal protein L35Ae"; Pfam "[Ribosomal_L35Ae] Ribosomal protein L35Ae"; CDD "60S ribosomal protein L35; Provisional"; KO "K02917"; similar_genes "RL35A_HUMAN(e-value:1.9e-16;bit-score:84.0)"; Scaffold001 rebuild exon 6952396 6952419 . - . gene_id "RvY_02498"; transcript_id "RvY_02498.1"; Scaffold001 rebuild exon 6952529 6952676 . - . gene_id "RvY_02498"; transcript_id "RvY_02498.1"; Scaffold001 rebuild exon 6952836 6952988 . - . gene_id "RvY_02498"; transcript_id "RvY_02498.1"; Scaffold001 rebuild exon 6953135 6953202 . - . gene_id "RvY_02498"; transcript_id "RvY_02498.1"; Scaffold001 rebuild transcript 6953736 6954397 . + . gene_id "RvY_02499"; transcript_id "RvY_02499.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6953736 6953996 . + . gene_id "RvY_02499"; transcript_id "RvY_02499.1"; Scaffold001 rebuild exon 6954077 6954397 . + . gene_id "RvY_02499"; transcript_id "RvY_02499.1"; Scaffold001 rebuild transcript 6954908 6955495 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6954908 6955016 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.1"; Scaffold001 rebuild exon 6955224 6955495 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.1"; Scaffold001 rebuild transcript 6954505 6955247 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6954505 6954588 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.2"; Scaffold001 rebuild exon 6954756 6955016 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.2"; Scaffold001 rebuild exon 6955224 6955247 . + . gene_id "RvY_02500"; transcript_id "RvY_02500.2"; Scaffold001 rebuild transcript 6955953 6957207 . - . gene_id "RvY_02501"; transcript_id "RvY_02501.1"; gene_name "DIRAS2"; annotation "putative GTP-binding protein Di-Ras1"; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively Scaffold001 rebuild exon 6955953 6956153 . - . gene_id "RvY_02501"; transcript_id "RvY_02501.1"; Scaffold001 rebuild exon 6956348 6956602 . - . gene_id "RvY_02501"; transcript_id "RvY_02501.1"; Scaffold001 rebuild exon 6957070 6957207 . - . gene_id "RvY_02501"; transcript_id "RvY_02501.1"; Scaffold001 rebuild transcript 6960884 6963088 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; gene_name "BCS1"; annotation "mitochondrial chaperone BCS1"; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)|[BCS1_N] BCS1 N terminal"; KO "K08900"; similar_genes "BCS1_DANRE(e-value:2.0e-24;bit-score:110.0)"; Scaffold001 rebuild exon 6960884 6961145 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; Scaffold001 rebuild exon 6961401 6961518 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; Scaffold001 rebuild exon 6961610 6961688 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; Scaffold001 rebuild exon 6961753 6961826 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; Scaffold001 rebuild exon 6961884 6962332 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; Scaffold001 rebuild exon 6962634 6963088 . - . gene_id "RvY_02502"; transcript_id "RvY_02502.1"; Scaffold001 rebuild transcript 6963886 6965772 . + . gene_id "RvY_02503"; transcript_id "RvY_02503.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14406"; similar_genes "CSTF1_HUMAN(e-value:2.2e-21;bit-score:100.0)"; Scaffold001 rebuild exon 6963886 6964632 . + . gene_id "RvY_02503"; transcript_id "RvY_02503.1"; Scaffold001 rebuild exon 6964905 6965211 . + . gene_id "RvY_02503"; transcript_id "RvY_02503.1"; Scaffold001 rebuild exon 6965270 6965772 . + . gene_id "RvY_02503"; transcript_id "RvY_02503.1"; Scaffold001 rebuild transcript 6967590 6968152 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6967590 6967802 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.1"; Scaffold001 rebuild exon 6967869 6967986 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.1"; Scaffold001 rebuild exon 6968049 6968152 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.1"; Scaffold001 rebuild transcript 6967812 6968152 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6967812 6967986 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.2"; Scaffold001 rebuild exon 6968049 6968152 . - . gene_id "RvY_02504"; transcript_id "RvY_02504.2"; Scaffold001 rebuild transcript 6976527 6977448 . - . gene_id "RvY_02505"; transcript_id "RvY_02505.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6976527 6976630 . - . gene_id "RvY_02505"; transcript_id "RvY_02505.1"; Scaffold001 rebuild exon 6976684 6976968 . - . gene_id "RvY_02505"; transcript_id "RvY_02505.1"; Scaffold001 rebuild exon 6977077 6977157 . - . gene_id "RvY_02505"; transcript_id "RvY_02505.1"; Scaffold001 rebuild exon 6977421 6977448 . - . gene_id "RvY_02505"; transcript_id "RvY_02505.1"; Scaffold001 rebuild transcript 6977727 6978254 . - . gene_id "RvY_02506"; transcript_id "RvY_02506.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6977727 6978037 . - . gene_id "RvY_02506"; transcript_id "RvY_02506.1"; Scaffold001 rebuild exon 6978140 6978254 . - . gene_id "RvY_02506"; transcript_id "RvY_02506.1"; Scaffold001 rebuild transcript 6978746 6979826 . + . gene_id "RvY_02507"; transcript_id "RvY_02507.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6978746 6978766 . + . gene_id "RvY_02507"; transcript_id "RvY_02507.1"; Scaffold001 rebuild exon 6979150 6979393 . + . gene_id "RvY_02507"; transcript_id "RvY_02507.1"; Scaffold001 rebuild exon 6979711 6979826 . + . gene_id "RvY_02507"; transcript_id "RvY_02507.1"; Scaffold001 rebuild transcript 6983929 6984264 . - . gene_id "RvY_02508"; transcript_id "RvY_02508.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6983929 6983953 . - . gene_id "RvY_02508"; transcript_id "RvY_02508.1"; Scaffold001 rebuild exon 6984053 6984264 . - . gene_id "RvY_02508"; transcript_id "RvY_02508.1"; Scaffold001 rebuild transcript 6984851 6985435 . + . gene_id "RvY_02509"; transcript_id "RvY_02509.1"; gene_name "NDUFAB1"; annotation "putative Acyl carrier protein, mitochondrial"; Pfam "[PP-binding] Phosphopantetheine attachment site"; CDD "acyl carrier protein; Provisional"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03955"; similar_genes "ACPM_DROME(e-value:2.0e-28;bit-score:123.0)"; Scaffold001 rebuild exon 6984851 6985435 . + . gene_id "RvY_02509"; transcript_id "RvY_02509.1"; Scaffold001 rebuild transcript 6985704 6987659 . + . gene_id "RvY_02510"; transcript_id "RvY_02510.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6985704 6985918 . + . gene_id "RvY_02510"; transcript_id "RvY_02510.1"; Scaffold001 rebuild exon 6987524 6987659 . + . gene_id "RvY_02510"; transcript_id "RvY_02510.1"; Scaffold001 rebuild transcript 6987773 6988752 . + . gene_id "RvY_02511"; transcript_id "RvY_02511.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6987773 6988202 . + . gene_id "RvY_02511"; transcript_id "RvY_02511.1"; Scaffold001 rebuild exon 6988355 6988543 . + . gene_id "RvY_02511"; transcript_id "RvY_02511.1"; Scaffold001 rebuild exon 6988631 6988752 . + . gene_id "RvY_02511"; transcript_id "RvY_02511.1"; Scaffold001 rebuild transcript 6988554 6989021 . + . gene_id "RvY_02511"; transcript_id "RvY_02511.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6988554 6989021 . + . gene_id "RvY_02511"; transcript_id "RvY_02511.2"; Scaffold001 rebuild transcript 6989290 6991983 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; gene_name "ElsH"; annotation "putative PGAP2-interacting protein"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "Metal-dependent hydrolase [General function prediction only]"; similar_genes "PG2IP_MOUSE(e-value:8.1e-49;bit-score:191.0)"; Scaffold001 rebuild exon 6989290 6989541 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; Scaffold001 rebuild exon 6989664 6989994 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; Scaffold001 rebuild exon 6990096 6990653 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; Scaffold001 rebuild exon 6990746 6991098 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; Scaffold001 rebuild exon 6991296 6991484 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; Scaffold001 rebuild exon 6991549 6991983 . + . gene_id "RvY_02512"; transcript_id "RvY_02512.1"; Scaffold001 rebuild transcript 6992473 6993582 . + . gene_id "RvY_02513"; transcript_id "RvY_02513.1"; annotation "hypothetical protein."; Pfam "[Scramblase]"; Scaffold001 rebuild exon 6992473 6992914 . + . gene_id "RvY_02513"; transcript_id "RvY_02513.1"; Scaffold001 rebuild exon 6993497 6993582 . + . gene_id "RvY_02513"; transcript_id "RvY_02513.1"; Scaffold001 rebuild transcript 6993858 6995012 . - . gene_id "RvY_02514"; transcript_id "RvY_02514.1"; gene_name "frmB"; annotation "putative S-formylglutathione hydrolase"; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Esterase] Putative esterase|[Peptidase_S9] Prolyl oligopeptidase family"; CDD "S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well."; EC "EC3.1.2.12"; KO "K01070"; similar_genes "ESTD_HUMAN(e-value:3.7e-34;bit-score:143.0)"; Scaffold001 rebuild exon 6993858 6994340 . - . gene_id "RvY_02514"; transcript_id "RvY_02514.1"; Scaffold001 rebuild exon 6994491 6994612 . - . gene_id "RvY_02514"; transcript_id "RvY_02514.1"; Scaffold001 rebuild exon 6994690 6994880 . - . gene_id "RvY_02514"; transcript_id "RvY_02514.1"; Scaffold001 rebuild exon 6994942 6995012 . - . gene_id "RvY_02514"; transcript_id "RvY_02514.1"; Scaffold001 rebuild transcript 6995723 6995923 . + . gene_id "RvY_02515"; transcript_id "RvY_02515.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6995723 6995923 . + . gene_id "RvY_02515"; transcript_id "RvY_02515.1"; Scaffold001 rebuild transcript 6995742 6996122 . - . gene_id "RvY_02516"; transcript_id "RvY_02516.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 6995742 6996122 . - . gene_id "RvY_02516"; transcript_id "RvY_02516.1"; Scaffold001 rebuild transcript 6996810 6998595 . - . gene_id "RvY_02517"; transcript_id "RvY_02517.1"; annotation "hypothetical protein."; Pfam "[Prefoldin] Prefoldin subunit"; Scaffold001 rebuild exon 6996810 6997025 . - . gene_id "RvY_02517"; transcript_id "RvY_02517.1"; Scaffold001 rebuild exon 6997312 6997845 . - . gene_id "RvY_02517"; transcript_id "RvY_02517.1"; Scaffold001 rebuild exon 6998155 6998595 . - . gene_id "RvY_02517"; transcript_id "RvY_02517.1"; Scaffold001 rebuild transcript 6999752 7000801 . + . gene_id "RvY_02518"; transcript_id "RvY_02518.1"; annotation "hypothetical protein."; Pfam "[UPF0029] Uncharacterized protein family UPF0029|[RWD]"; similar_genes "IMPCT_MOUSE(e-value:8.4e-19;bit-score:92.0)"; Scaffold001 rebuild exon 6999752 7000134 . + . gene_id "RvY_02518"; transcript_id "RvY_02518.1"; Scaffold001 rebuild exon 7000300 7000620 . + . gene_id "RvY_02518"; transcript_id "RvY_02518.1"; Scaffold001 rebuild exon 7000696 7000801 . + . gene_id "RvY_02518"; transcript_id "RvY_02518.1"; Scaffold001 rebuild transcript 7001009 7004759 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 7001009 7001859 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; Scaffold001 rebuild exon 7001930 7003717 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; Scaffold001 rebuild exon 7003835 7003956 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; Scaffold001 rebuild exon 7004080 7004123 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; Scaffold001 rebuild exon 7004199 7004480 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; Scaffold001 rebuild exon 7004682 7004759 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.1"; Scaffold001 rebuild transcript 7001009 7003592 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold001 rebuild exon 7001009 7001859 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.2"; Scaffold001 rebuild exon 7001930 7003592 . - . gene_id "RvY_02519"; transcript_id "RvY_02519.2"; Scaffold001 rebuild transcript 7005669 7007704 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.1"; gene_name "SOX-TCF_HMG-box"; annotation "putative Transcription factor Sox-14"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; similar_genes "SOX14_DANRE(e-value:3.4e-26;bit-score:116.0)"; Scaffold001 rebuild exon 7005669 7005722 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.1"; Scaffold001 rebuild exon 7005917 7006277 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.1"; Scaffold001 rebuild exon 7006495 7006871 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.1"; Scaffold001 rebuild exon 7007305 7007478 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.1"; Scaffold001 rebuild exon 7007540 7007704 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.1"; Scaffold001 rebuild transcript 7005669 7007704 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.2"; gene_name "SOX-TCF_HMG-box"; annotation "putative Transcription factor Sox-14"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; similar_genes "SOX14_DANRE(e-value:3.4e-26;bit-score:116.0)"; Scaffold001 rebuild exon 7005669 7005722 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.2"; Scaffold001 rebuild exon 7005917 7006277 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.2"; Scaffold001 rebuild exon 7006504 7006871 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.2"; Scaffold001 rebuild exon 7007305 7007478 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.2"; Scaffold001 rebuild exon 7007540 7007704 . - . gene_id "RvY_02520"; transcript_id "RvY_02520.2"; Scaffold001 rebuild transcript 7008328 7008939 . + . gene_id "RvY_02521"; transcript_id "RvY_02521.1"; annotation "hypothetical protein."; Pfam "[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain|[RicinB_lectin_2] Ricin-type beta-trefoil lectin domain-like"; Scaffold001 rebuild exon 7008328 7008939 . + . gene_id "RvY_02521"; transcript_id "RvY_02521.1"; Scaffold001 rebuild transcript 7009179 7014213 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; gene_name "PIAS"; annotation "protein inhibitor of activated STAT"; Pfam "[zf-MIZ] MIZ/SP-RING zinc finger"; CDD "MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation."; EC "EC6.-.-.-"; KO "K04706"; similar_genes "PLI1_SCHPO(e-value:4.5e-09;bit-score:59.0)"; Scaffold001 rebuild exon 7009179 7009279 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7009349 7009482 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7009781 7010015 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7010086 7010188 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7010393 7010572 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7010636 7010838 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7010903 7011215 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7011501 7011942 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7012273 7012752 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7013052 7013611 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild exon 7013974 7014213 . - . gene_id "RvY_02522"; transcript_id "RvY_02522.1"; Scaffold001 rebuild transcript 7014641 7014817 . + . gene_id "RvY_02523"; transcript_id "RvY_02523.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7014641 7014817 . + . gene_id "RvY_02523"; transcript_id "RvY_02523.1"; Scaffold001 rebuild transcript 7017944 7018227 . - . gene_id "RvY_02524"; transcript_id "RvY_02524.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7017944 7018080 . - . gene_id "RvY_02524"; transcript_id "RvY_02524.1"; Scaffold001 rebuild exon 7018146 7018227 . - . gene_id "RvY_02524"; transcript_id "RvY_02524.1"; Scaffold001 rebuild transcript 7019404 7022351 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; gene_name "PRK07764"; annotation "hypothetical protein."; Pfam "[GKAP] Guanylate-kinase-associated protein (GKAP) protein"; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold001 rebuild exon 7019404 7019479 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7019570 7019896 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7019969 7020148 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7020376 7020483 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7020559 7020834 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7020896 7021051 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7021396 7021556 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7021639 7021770 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild exon 7022046 7022351 . + . gene_id "RvY_02525"; transcript_id "RvY_02525.1"; Scaffold001 rebuild transcript 7024903 7026656 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; gene_name "TNNT3"; annotation "troponin T, fast skeletal muscle"; Pfam "[Troponin]"; CDD "(2)translation initiation factor IF-2; Validated"; KO "K12046"; Scaffold001 rebuild exon 7024903 7024970 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild exon 7025171 7025348 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild exon 7025422 7025508 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild exon 7025576 7025719 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild exon 7025784 7026005 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild exon 7026187 7026397 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild exon 7026472 7026656 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.1"; Scaffold001 rebuild transcript 7023298 7026656 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; gene_name "TNNT3"; annotation "troponin T, fast skeletal muscle"; Pfam "[Troponin]"; CDD "(2)translation initiation factor IF-2; Validated"; KO "K12046"; Scaffold001 rebuild exon 7023298 7023326 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7024947 7024970 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7025171 7025348 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7025422 7025508 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7025576 7025719 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7025784 7026005 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7026187 7026397 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild exon 7026472 7026656 . + . gene_id "RvY_02526"; transcript_id "RvY_02526.2"; Scaffold001 rebuild transcript 7027223 7028541 . - . gene_id "RvY_02527"; transcript_id "RvY_02527.1"; annotation "hypothetical protein."; Pfam "[EGF] EGF-like domain|[EGF_CA] Calcium-binding EGF domain"; Scaffold001 rebuild exon 7027223 7027623 . - . gene_id "RvY_02527"; transcript_id "RvY_02527.1"; Scaffold001 rebuild exon 7028106 7028541 . - . gene_id "RvY_02527"; transcript_id "RvY_02527.1"; Scaffold001 rebuild transcript 7029856 7030352 . + . gene_id "RvY_02528"; transcript_id "RvY_02528.1"; annotation "hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A4_DROME(e-value:1.0e-12;bit-score:71.0)"; Scaffold001 rebuild exon 7029856 7029892 . + . gene_id "RvY_02528"; transcript_id "RvY_02528.1"; Scaffold001 rebuild exon 7030086 7030220 . + . gene_id "RvY_02528"; transcript_id "RvY_02528.1"; Scaffold001 rebuild exon 7030306 7030352 . + . gene_id "RvY_02528"; transcript_id "RvY_02528.1"; Scaffold001 rebuild transcript 7030695 7034264 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; gene_name "(1,2)SLC6A4"; annotation "(1,2)Sodium-dependent dopamine transporter(3)putative Sodium-dependent dopamine transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1,2)K05037"; similar_genes "(1,2)SC6A3_RAT(e-value:1.2e-51;bit-score:201.0)(3)NTDO_CAEEL(e-value:4.2e-35;bit-score:146.0)"; Scaffold001 rebuild exon 7030695 7030803 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7031111 7031148 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7031440 7031518 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7031682 7031772 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7032255 7032484 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7032561 7032861 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7032980 7033064 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7033151 7033282 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7033347 7033374 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7033499 7033671 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7033945 7034112 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild exon 7034175 7034264 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.1"; Scaffold001 rebuild transcript 7030713 7034264 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; gene_name "(1,2)SLC6A4"; annotation "(1,2)Sodium-dependent dopamine transporter(3)putative Sodium-dependent dopamine transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1,2)K05037"; similar_genes "(1,2)SC6A3_RAT(e-value:1.2e-51;bit-score:201.0)(3)NTDO_CAEEL(e-value:4.2e-35;bit-score:146.0)"; Scaffold001 rebuild exon 7030713 7030803 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7031111 7031148 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7031440 7031518 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7031682 7031772 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7032255 7032484 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7032561 7032861 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7032980 7033064 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7033151 7033282 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7033347 7033374 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7033499 7033671 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7033945 7034112 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild exon 7034175 7034264 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.2"; Scaffold001 rebuild transcript 7032665 7034181 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; gene_name "(1,2)SLC6A4"; annotation "(1,2)Sodium-dependent dopamine transporter(3)putative Sodium-dependent dopamine transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1,2)K05037"; similar_genes "(1,2)SC6A3_RAT(e-value:1.2e-51;bit-score:201.0)(3)NTDO_CAEEL(e-value:4.2e-35;bit-score:146.0)"; Scaffold001 rebuild exon 7032665 7032861 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild exon 7032980 7033064 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild exon 7033151 7033282 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild exon 7033347 7033374 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild exon 7033499 7033671 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild exon 7033945 7034114 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild exon 7034175 7034181 . + . gene_id "RvY_02529"; transcript_id "RvY_02529.3"; Scaffold001 rebuild transcript 7034614 7035853 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; gene_name "DNAJC5"; annotation "putative Cysteine string protein"; Pfam "[DnaJ]"; KO "K09525"; similar_genes "CSP_XENLA(e-value:5.9e-26;bit-score:115.0)"; Scaffold001 rebuild exon 7034614 7034865 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; Scaffold001 rebuild exon 7034937 7035071 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; Scaffold001 rebuild exon 7035180 7035253 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; Scaffold001 rebuild exon 7035362 7035440 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; Scaffold001 rebuild exon 7035605 7035661 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; Scaffold001 rebuild exon 7035740 7035853 . - . gene_id "RvY_02530"; transcript_id "RvY_02530.1"; Scaffold001 rebuild transcript 7036680 7037399 . - . gene_id "RvY_02531"; transcript_id "RvY_02531.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7036680 7037399 . - . gene_id "RvY_02531"; transcript_id "RvY_02531.1"; Scaffold001 rebuild transcript 7038308 7038484 . + . gene_id "RvY_02532"; transcript_id "RvY_02532.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7038308 7038484 . + . gene_id "RvY_02532"; transcript_id "RvY_02532.1"; Scaffold001 rebuild transcript 7039210 7040713 . + . gene_id "RvY_02533"; transcript_id "RvY_02533.1"; annotation "hypothetical protein."; Pfam "[ARL2_Bind_BART] The ARF-like 2 binding protein BART"; Scaffold001 rebuild exon 7039210 7039402 . + . gene_id "RvY_02533"; transcript_id "RvY_02533.1"; Scaffold001 rebuild exon 7039559 7039623 . + . gene_id "RvY_02533"; transcript_id "RvY_02533.1"; Scaffold001 rebuild exon 7039701 7039814 . + . gene_id "RvY_02533"; transcript_id "RvY_02533.1"; Scaffold001 rebuild exon 7039911 7040143 . + . gene_id "RvY_02533"; transcript_id "RvY_02533.1"; Scaffold001 rebuild exon 7040203 7040713 . + . gene_id "RvY_02533"; transcript_id "RvY_02533.1"; Scaffold001 rebuild transcript 7041151 7042740 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold001 rebuild exon 7041151 7041569 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.1"; Scaffold001 rebuild exon 7041637 7042288 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.1"; Scaffold001 rebuild exon 7042351 7042740 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.1"; Scaffold001 rebuild transcript 7041151 7042531 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.2"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold001 rebuild exon 7041151 7041569 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.2"; Scaffold001 rebuild exon 7041637 7042288 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.2"; Scaffold001 rebuild exon 7042351 7042424 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.2"; Scaffold001 rebuild exon 7042483 7042531 . + . gene_id "RvY_02534"; transcript_id "RvY_02534.2"; Scaffold001 rebuild transcript 7050236 7052552 . + . gene_id "RvY_02535"; transcript_id "RvY_02535.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7050236 7051648 . + . gene_id "RvY_02535"; transcript_id "RvY_02535.1"; Scaffold001 rebuild exon 7051833 7052552 . + . gene_id "RvY_02535"; transcript_id "RvY_02535.1"; Scaffold001 rebuild transcript 7054034 7054378 . - . gene_id "RvY_02536"; transcript_id "RvY_02536.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7054034 7054378 . - . gene_id "RvY_02536"; transcript_id "RvY_02536.1"; Scaffold001 rebuild transcript 7054453 7055606 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; gene_name "DNAJC5"; annotation "DnaJ homolog subfamily C member 5"; Pfam "[DnaJ]"; CDD "DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]"; KO "K09525"; similar_genes "CSP_DROME(e-value:1.7e-23;bit-score:107.0)"; Scaffold001 rebuild exon 7054453 7054472 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; Scaffold001 rebuild exon 7054654 7054735 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; Scaffold001 rebuild exon 7054798 7054854 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; Scaffold001 rebuild exon 7054923 7055000 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; Scaffold001 rebuild exon 7055081 7055146 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; Scaffold001 rebuild exon 7055307 7055606 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.1"; Scaffold001 rebuild transcript 7054453 7055726 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; gene_name "DNAJC5"; annotation "DnaJ homolog subfamily C member 5"; Pfam "[DnaJ]"; CDD "DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]"; KO "K09525"; similar_genes "CSP_DROME(e-value:1.7e-23;bit-score:107.0)"; Scaffold001 rebuild exon 7054453 7054472 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild exon 7054654 7054735 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild exon 7054798 7054854 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild exon 7054923 7055000 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild exon 7055081 7055146 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild exon 7055307 7055439 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild exon 7055659 7055726 . + . gene_id "RvY_02537"; transcript_id "RvY_02537.2"; Scaffold001 rebuild transcript 7058024 7058278 . + . gene_id "RvY_02538"; transcript_id "RvY_02538.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)"; Scaffold001 rebuild exon 7058024 7058278 . + . gene_id "RvY_02538"; transcript_id "RvY_02538.1"; Scaffold001 rebuild transcript 7059092 7060516 . - . gene_id "RvY_02539"; transcript_id "RvY_02539.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7059092 7059601 . - . gene_id "RvY_02539"; transcript_id "RvY_02539.1"; Scaffold001 rebuild exon 7059715 7059970 . - . gene_id "RvY_02539"; transcript_id "RvY_02539.1"; Scaffold001 rebuild exon 7060042 7060179 . - . gene_id "RvY_02539"; transcript_id "RvY_02539.1"; Scaffold001 rebuild exon 7060275 7060516 . - . gene_id "RvY_02539"; transcript_id "RvY_02539.1"; Scaffold001 rebuild transcript 7060669 7061010 . - . gene_id "RvY_02540"; transcript_id "RvY_02540.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7060669 7061010 . - . gene_id "RvY_02540"; transcript_id "RvY_02540.1"; Scaffold001 rebuild transcript 7062500 7064409 . - . gene_id "RvY_02541"; transcript_id "RvY_02541.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7062500 7062955 . - . gene_id "RvY_02541"; transcript_id "RvY_02541.1"; Scaffold001 rebuild exon 7063622 7064133 . - . gene_id "RvY_02541"; transcript_id "RvY_02541.1"; Scaffold001 rebuild exon 7064214 7064409 . - . gene_id "RvY_02541"; transcript_id "RvY_02541.1"; Scaffold001 rebuild transcript 7066533 7068330 . + . gene_id "RvY_02542"; transcript_id "RvY_02542.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7066533 7066677 . + . gene_id "RvY_02542"; transcript_id "RvY_02542.1"; Scaffold001 rebuild exon 7068182 7068330 . + . gene_id "RvY_02542"; transcript_id "RvY_02542.1"; Scaffold001 rebuild transcript 7069679 7075144 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold001 rebuild exon 7069679 7069705 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7069784 7069883 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7069960 7070207 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7070297 7070377 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7070467 7070584 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7070677 7070724 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7070804 7070937 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7071016 7071417 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7071483 7071553 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7071696 7071794 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7071881 7071960 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7072032 7072116 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7072199 7072313 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7072388 7072639 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7072827 7072886 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7072948 7073129 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7073211 7073517 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7073579 7073926 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7074156 7074365 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7074441 7074626 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7074694 7074827 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild exon 7074904 7075144 . + . gene_id "RvY_02543"; transcript_id "RvY_02543.1"; Scaffold001 rebuild transcript 7074862 7075117 . - . gene_id "RvY_02544"; transcript_id "RvY_02544.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7074862 7074882 . - . gene_id "RvY_02544"; transcript_id "RvY_02544.1"; Scaffold001 rebuild exon 7074944 7075117 . - . gene_id "RvY_02544"; transcript_id "RvY_02544.1"; Scaffold001 rebuild transcript 7076724 7077403 . + . gene_id "RvY_02545"; transcript_id "RvY_02545.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7076724 7077033 . + . gene_id "RvY_02545"; transcript_id "RvY_02545.1"; Scaffold001 rebuild exon 7077078 7077403 . + . gene_id "RvY_02545"; transcript_id "RvY_02545.1"; Scaffold001 rebuild transcript 7077868 7078158 . + . gene_id "RvY_02546"; transcript_id "RvY_02546.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7077868 7078158 . + . gene_id "RvY_02546"; transcript_id "RvY_02546.1"; Scaffold001 rebuild transcript 7078241 7079056 . - . gene_id "RvY_02547"; transcript_id "RvY_02547.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1] Transposase DDE domain|[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 7078241 7078782 . - . gene_id "RvY_02547"; transcript_id "RvY_02547.1"; Scaffold001 rebuild exon 7078855 7079056 . - . gene_id "RvY_02547"; transcript_id "RvY_02547.1"; Scaffold001 rebuild transcript 7079080 7079253 . - . gene_id "RvY_02548"; transcript_id "RvY_02548.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7079080 7079253 . - . gene_id "RvY_02548"; transcript_id "RvY_02548.1"; Scaffold001 rebuild transcript 7080194 7081622 . + . gene_id "RvY_02549"; transcript_id "RvY_02549.1"; gene_name "TCTP"; annotation "putative Translationally-controlled tumor protein homolog"; Pfam "[TCTP] Translationally controlled tumour protein"; CDD "Translationally controlled tumour protein."; similar_genes "TCTP_BOMMO(e-value:9.5e-35;bit-score:145.0)"; Scaffold001 rebuild exon 7080194 7080221 . + . gene_id "RvY_02549"; transcript_id "RvY_02549.1"; Scaffold001 rebuild exon 7080340 7080410 . + . gene_id "RvY_02549"; transcript_id "RvY_02549.1"; Scaffold001 rebuild exon 7080600 7080787 . + . gene_id "RvY_02549"; transcript_id "RvY_02549.1"; Scaffold001 rebuild exon 7080853 7080968 . + . gene_id "RvY_02549"; transcript_id "RvY_02549.1"; Scaffold001 rebuild exon 7081504 7081622 . + . gene_id "RvY_02549"; transcript_id "RvY_02549.1"; Scaffold001 rebuild transcript 7085152 7095888 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; gene_name "MYO7"; annotation "Myosin-VIIa"; Pfam "[FERM_N] FERM N-terminal domain|[Myosin_head] Myosin head (motor domain)|[MyTH4]|[FERM_M] FERM central domain|[IQ] IQ calmodulin-binding motif"; CDD "Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle."; KO "K10359"; similar_genes "MYO7A_DROPS(e-value:2.9e-212;bit-score:734.0)"; Scaffold001 rebuild exon 7085152 7085286 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7085495 7085564 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7085648 7085727 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7085810 7085994 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7086119 7086497 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7086687 7086840 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7087107 7087443 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7087626 7087836 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7087893 7088155 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7088464 7088827 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7088891 7089070 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7089397 7089949 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7090136 7090332 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7090415 7090602 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7090674 7090904 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7090981 7091170 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7091304 7091438 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7091515 7091727 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7091792 7091986 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7092111 7092147 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7092436 7092680 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7093114 7093371 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7093450 7093721 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7093945 7094290 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7094361 7094458 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7094539 7094632 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7094718 7094994 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7095045 7095214 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7095409 7095492 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7095585 7095704 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild exon 7095790 7095888 . + . gene_id "RvY_02550"; transcript_id "RvY_02550.1"; Scaffold001 rebuild transcript 7096329 7104859 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; gene_name "NTN1"; annotation "Netrin-1"; Pfam "[F5_F8_type_C] F5/8 type C domain|[NTR] UNC-6/NTR/C345C module|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Laminin_N] Laminin N-terminal (Domain VI)"; CDD "Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins."; KO "K06843"; similar_genes "NET1_CHICK(e-value:1.3e-97;bit-score:353.0)"; Scaffold001 rebuild exon 7096329 7096732 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7096914 7096982 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7097242 7097310 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7097392 7097541 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7097843 7098031 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7102822 7103319 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7103772 7104338 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild exon 7104619 7104859 . - . gene_id "RvY_02551"; transcript_id "RvY_02551.1"; Scaffold001 rebuild transcript 7108166 7113042 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; gene_name "EIF2AK"; annotation "eukaryotic translation initiation factor 2-alpha kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08860"; similar_genes "E2AK3_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold001 rebuild exon 7108166 7108479 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7108545 7108658 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7108920 7109438 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7109672 7110150 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7110436 7110564 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7110639 7111044 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7111379 7111489 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7111624 7111759 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7111827 7112159 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7112308 7112505 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7112564 7112714 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild exon 7112771 7113042 . - . gene_id "RvY_02552"; transcript_id "RvY_02552.1"; Scaffold001 rebuild transcript 7113780 7115917 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; gene_name "RAD9B"; annotation "cell cycle checkpoint control protein RAD9B"; Pfam "[Rad9]"; KO "K10995"; Scaffold001 rebuild exon 7113780 7113819 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7113882 7113952 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7114018 7114161 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7114233 7114347 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7114413 7114619 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7114729 7114939 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7115009 7115349 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild exon 7115637 7115917 . + . gene_id "RvY_02553"; transcript_id "RvY_02553.1"; Scaffold001 rebuild transcript 7116171 7118289 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; gene_name "(1)PECI(2)ACBP"; annotation "(1)putative Peroxisomal 3,2-trans-enoyl-CoA isomerase(2)hypothetical protein."; Pfam "[ACBP] Acyl CoA binding protein|(1)[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "(1)Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in Scaffold001 rebuild exon 7116171 7116461 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7116621 7116710 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7116956 7117076 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7117157 7117265 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7117327 7117427 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7117509 7117678 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7117766 7117864 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild exon 7118056 7118289 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.1"; Scaffold001 rebuild transcript 7117448 7118454 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.2"; gene_name "(1)PECI(2)ACBP"; annotation "(1)putative Peroxisomal 3,2-trans-enoyl-CoA isomerase(2)hypothetical protein."; Pfam "[ACBP] Acyl CoA binding protein|(1)[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "(1)Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in Scaffold001 rebuild exon 7117448 7117678 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.2"; Scaffold001 rebuild exon 7117766 7117864 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.2"; Scaffold001 rebuild exon 7118056 7118454 . - . gene_id "RvY_02554"; transcript_id "RvY_02554.2"; Scaffold001 rebuild transcript 7118718 7121000 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.1"; annotation "putative Serine beta-lactamase-like protein LACTB, mitochondrial"; Pfam "[Beta-lactamase]"; EC "EC3.4.-.-"; similar_genes "LACTB_BOVIN(e-value:4.3e-37;bit-score:152.0)"; Scaffold001 rebuild exon 7118718 7119126 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.1"; Scaffold001 rebuild exon 7119295 7119587 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.1"; Scaffold001 rebuild exon 7119656 7119911 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.1"; Scaffold001 rebuild exon 7119976 7120141 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.1"; Scaffold001 rebuild exon 7120466 7121000 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.1"; Scaffold001 rebuild transcript 7118718 7120145 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.2"; annotation "putative Serine beta-lactamase-like protein LACTB, mitochondrial"; Pfam "[Beta-lactamase]"; EC "EC3.4.-.-"; similar_genes "LACTB_BOVIN(e-value:4.3e-37;bit-score:152.0)"; Scaffold001 rebuild exon 7118718 7119126 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.2"; Scaffold001 rebuild exon 7119295 7119587 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.2"; Scaffold001 rebuild exon 7119656 7119911 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.2"; Scaffold001 rebuild exon 7119976 7120145 . + . gene_id "RvY_02555"; transcript_id "RvY_02555.2"; Scaffold001 rebuild transcript 7122314 7123205 . + . gene_id "RvY_02556"; transcript_id "RvY_02556.1"; annotation "hypothetical protein."; Pfam "[LIM]"; similar_genes "(1)TGFI1_XENLA(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 7122314 7122352 . + . gene_id "RvY_02556"; transcript_id "RvY_02556.1"; Scaffold001 rebuild exon 7122732 7122962 . + . gene_id "RvY_02556"; transcript_id "RvY_02556.1"; Scaffold001 rebuild exon 7123113 7123205 . + . gene_id "RvY_02556"; transcript_id "RvY_02556.1"; Scaffold001 rebuild transcript 7123102 7123395 . + . gene_id "RvY_02556"; transcript_id "RvY_02556.2"; annotation "hypothetical protein."; Pfam "[LIM]"; similar_genes "(1)TGFI1_XENLA(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 7123102 7123395 . + . gene_id "RvY_02556"; transcript_id "RvY_02556.2"; Scaffold001 rebuild transcript 7123618 7123971 . - . gene_id "RvY_02557"; transcript_id "RvY_02557.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7123618 7123971 . - . gene_id "RvY_02557"; transcript_id "RvY_02557.1"; Scaffold001 rebuild transcript 7124711 7125159 . - . gene_id "RvY_02558"; transcript_id "RvY_02558.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7124711 7125024 . - . gene_id "RvY_02558"; transcript_id "RvY_02558.1"; Scaffold001 rebuild exon 7125123 7125159 . - . gene_id "RvY_02558"; transcript_id "RvY_02558.1"; Scaffold001 rebuild transcript 7126688 7140006 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; annotation "putative HEAT repeat-containing protein 5B"; Pfam "[HEAT_2] HEAT repeats|[HEAT] HEAT repeat"; similar_genes "HTR5B_MOUSE(e-value:4.7e-49;bit-score:192.0)"; Scaffold001 rebuild exon 7126688 7127590 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7127929 7128278 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7128574 7129173 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7129382 7129822 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7130048 7130354 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7130412 7130669 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7130762 7131063 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7131285 7131547 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7131711 7132143 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7132480 7132606 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7133182 7133490 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7133748 7133953 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7134415 7134777 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7135030 7135096 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7135702 7136169 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7136595 7136868 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7138420 7138688 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7139023 7139305 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild exon 7139978 7140006 . - . gene_id "RvY_02559"; transcript_id "RvY_02559.1"; Scaffold001 rebuild transcript 7142934 7148492 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; gene_name "BMS1"; annotation "Ribosome biogenesis protein BMS1 homolog"; Pfam "[AARP2CN] AARP2CN (NUC121) domain|[DUF663]|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]"; KO "K14569"; similar_genes "BMS1_HUMAN(e-value:3.3e-109;bit-score:392.0)"; Scaffold001 rebuild exon 7142934 7143170 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7143287 7143776 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7143971 7144165 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7144488 7145024 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7145365 7145903 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7146176 7146583 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7146816 7147020 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7147287 7147699 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild exon 7148064 7148492 . + . gene_id "RvY_02560"; transcript_id "RvY_02560.1"; Scaffold001 rebuild transcript 7148893 7149231 . - . gene_id "RvY_02561"; transcript_id "RvY_02561.1"; gene_name "SUI1"; annotation "putative Protein translation factor SUI1 homolog"; Pfam "[SUI1] Translation initiation factor SUI1"; CDD "translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation."; KO "K03113"; similar_genes "SUI1_ANOGA(e-value:1.6e-34;bit-score:144.0)"; Scaffold001 rebuild exon 7148893 7149231 . - . gene_id "RvY_02561"; transcript_id "RvY_02561.1"; Scaffold001 rebuild transcript 7149879 7151481 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; gene_name "HRAD1"; annotation "cell cycle checkpoint protein [EC:3.1.11.2]"; Pfam "[Rad1] Repair protein Rad1/Rec1/Rad17"; CDD "Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY]."; EC "EC3.1.11.2"; KO "K02830"; Scaffold001 rebuild exon 7149879 7150058 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild exon 7150149 7150304 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild exon 7150435 7150635 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild exon 7150702 7150843 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild exon 7151081 7151129 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild exon 7151225 7151369 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild exon 7151446 7151481 . + . gene_id "RvY_02562"; transcript_id "RvY_02562.1"; Scaffold001 rebuild transcript 7152421 7152687 . - . gene_id "RvY_02563"; transcript_id "RvY_02563.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7152421 7152687 . - . gene_id "RvY_02563"; transcript_id "RvY_02563.1"; Scaffold001 rebuild transcript 7152879 7153231 . + . gene_id "RvY_02564"; transcript_id "RvY_02564.1"; annotation "hypothetical protein."; Pfam "[Rad1] Repair protein Rad1/Rec1/Rad17"; Scaffold001 rebuild exon 7152879 7153094 . + . gene_id "RvY_02564"; transcript_id "RvY_02564.1"; Scaffold001 rebuild exon 7153160 7153231 . + . gene_id "RvY_02564"; transcript_id "RvY_02564.1"; Scaffold001 rebuild transcript 7156292 7156537 . + . gene_id "RvY_02565"; transcript_id "RvY_02565.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7156292 7156537 . + . gene_id "RvY_02565"; transcript_id "RvY_02565.1"; Scaffold001 rebuild transcript 7156541 7156759 . + . gene_id "RvY_02566"; transcript_id "RvY_02566.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7156541 7156759 . + . gene_id "RvY_02566"; transcript_id "RvY_02566.1"; Scaffold001 rebuild transcript 7156774 7157655 . + . gene_id "RvY_02567"; transcript_id "RvY_02567.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; Scaffold001 rebuild exon 7156774 7156952 . + . gene_id "RvY_02567"; transcript_id "RvY_02567.1"; Scaffold001 rebuild exon 7157254 7157398 . + . gene_id "RvY_02567"; transcript_id "RvY_02567.1"; Scaffold001 rebuild exon 7157443 7157655 . + . gene_id "RvY_02567"; transcript_id "RvY_02567.1"; Scaffold001 rebuild transcript 7158835 7160113 . + . gene_id "RvY_02568"; transcript_id "RvY_02568.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7158835 7158980 . + . gene_id "RvY_02568"; transcript_id "RvY_02568.1"; Scaffold001 rebuild exon 7159909 7160113 . + . gene_id "RvY_02568"; transcript_id "RvY_02568.1"; Scaffold001 rebuild transcript 7158916 7159526 . - . gene_id "RvY_02569"; transcript_id "RvY_02569.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7158916 7159128 . - . gene_id "RvY_02569"; transcript_id "RvY_02569.1"; Scaffold001 rebuild exon 7159488 7159526 . - . gene_id "RvY_02569"; transcript_id "RvY_02569.1"; Scaffold001 rebuild transcript 7160247 7160831 . + . gene_id "RvY_02570"; transcript_id "RvY_02570.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7160247 7160513 . + . gene_id "RvY_02570"; transcript_id "RvY_02570.1"; Scaffold001 rebuild exon 7160673 7160831 . + . gene_id "RvY_02570"; transcript_id "RvY_02570.1"; Scaffold001 rebuild transcript 7162275 7163199 . + . gene_id "RvY_02571"; transcript_id "RvY_02571.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7162275 7162469 . + . gene_id "RvY_02571"; transcript_id "RvY_02571.1"; Scaffold001 rebuild exon 7163167 7163199 . + . gene_id "RvY_02571"; transcript_id "RvY_02571.1"; Scaffold001 rebuild transcript 7163196 7169828 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain"; Scaffold001 rebuild exon 7163196 7163480 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; Scaffold001 rebuild exon 7163541 7163767 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; Scaffold001 rebuild exon 7163859 7164284 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; Scaffold001 rebuild exon 7164374 7164524 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; Scaffold001 rebuild exon 7164703 7164999 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; Scaffold001 rebuild exon 7169664 7169828 . - . gene_id "RvY_02572"; transcript_id "RvY_02572.1"; Scaffold001 rebuild transcript 7171948 7174785 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; Scaffold001 rebuild exon 7171948 7171984 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild exon 7172074 7172385 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild exon 7172460 7172491 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild exon 7172561 7172686 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild exon 7172750 7172835 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild exon 7172959 7173050 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild exon 7173149 7174785 . + . gene_id "RvY_02573"; transcript_id "RvY_02573.1"; Scaffold001 rebuild transcript 7175238 7175453 . - . gene_id "RvY_02574"; transcript_id "RvY_02574.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7175238 7175453 . - . gene_id "RvY_02574"; transcript_id "RvY_02574.1"; Scaffold001 rebuild transcript 7179617 7180816 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; annotation "hypothetical protein."; Pfam "[Autophagy_act_C] Autophagocytosis associated protein, Scaffold001 rebuild exon 7179617 7179751 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; Scaffold001 rebuild exon 7179846 7179899 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; Scaffold001 rebuild exon 7179986 7180042 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; Scaffold001 rebuild exon 7180269 7180353 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; Scaffold001 rebuild exon 7180439 7180637 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; Scaffold001 rebuild exon 7180735 7180816 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.1"; Scaffold001 rebuild transcript 7179617 7180641 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.2"; annotation "hypothetical protein."; Pfam "[Autophagy_act_C] Autophagocytosis associated protein, Scaffold001 rebuild exon 7179617 7179751 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.2"; Scaffold001 rebuild exon 7179846 7179899 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.2"; Scaffold001 rebuild exon 7179986 7180042 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.2"; Scaffold001 rebuild exon 7180269 7180353 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.2"; Scaffold001 rebuild exon 7180439 7180641 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.2"; Scaffold001 rebuild transcript 7179617 7180183 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.3"; annotation "hypothetical protein."; Pfam "[Autophagy_act_C] Autophagocytosis associated protein, Scaffold001 rebuild exon 7179617 7179751 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.3"; Scaffold001 rebuild exon 7179846 7179899 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.3"; Scaffold001 rebuild exon 7179986 7180183 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.3"; Scaffold001 rebuild transcript 7179617 7180379 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.4"; annotation "hypothetical protein."; Pfam "[Autophagy_act_C] Autophagocytosis associated protein, Scaffold001 rebuild exon 7179617 7179751 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.4"; Scaffold001 rebuild exon 7179846 7179899 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.4"; Scaffold001 rebuild exon 7179986 7180042 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.4"; Scaffold001 rebuild exon 7180269 7180379 . + . gene_id "RvY_02575"; transcript_id "RvY_02575.4"; Scaffold001 rebuild transcript 7181094 7183032 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; similar_genes "TTC14_HUMAN(e-value:6.8e-10;bit-score:62.0)"; Scaffold001 rebuild exon 7181094 7181472 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild exon 7181543 7181661 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild exon 7181730 7181844 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild exon 7182013 7182135 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild exon 7182216 7182335 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild exon 7182409 7182648 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild exon 7182722 7183032 . - . gene_id "RvY_02576"; transcript_id "RvY_02576.1"; Scaffold001 rebuild transcript 7184420 7186238 . + . gene_id "RvY_02577"; transcript_id "RvY_02577.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7184420 7184523 . + . gene_id "RvY_02577"; transcript_id "RvY_02577.1"; Scaffold001 rebuild exon 7184687 7186238 . + . gene_id "RvY_02577"; transcript_id "RvY_02577.1"; Scaffold001 rebuild transcript 7191454 7191699 . - . gene_id "RvY_02578"; transcript_id "RvY_02578.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7191454 7191699 . - . gene_id "RvY_02578"; transcript_id "RvY_02578.1"; Scaffold001 rebuild transcript 7204275 7205514 . - . gene_id "RvY_02579"; transcript_id "RvY_02579.1"; annotation "hypothetical protein."; Pfam "[Trehalase]"; Scaffold001 rebuild exon 7204275 7204929 . - . gene_id "RvY_02579"; transcript_id "RvY_02579.1"; Scaffold001 rebuild exon 7205438 7205514 . - . gene_id "RvY_02579"; transcript_id "RvY_02579.1"; Scaffold001 rebuild transcript 7204302 7204844 . - . gene_id "RvY_02579"; transcript_id "RvY_02579.2"; annotation "hypothetical protein."; Pfam "[Trehalase]"; Scaffold001 rebuild exon 7204302 7204844 . - . gene_id "RvY_02579"; transcript_id "RvY_02579.2"; Scaffold001 rebuild transcript 7210443 7211477 . - . gene_id "RvY_02580"; transcript_id "RvY_02580.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7210443 7210552 . - . gene_id "RvY_02580"; transcript_id "RvY_02580.1"; Scaffold001 rebuild exon 7210678 7210816 . - . gene_id "RvY_02580"; transcript_id "RvY_02580.1"; Scaffold001 rebuild exon 7211439 7211477 . - . gene_id "RvY_02580"; transcript_id "RvY_02580.1"; Scaffold001 rebuild transcript 7211594 7211890 . - . gene_id "RvY_02581"; transcript_id "RvY_02581.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7211594 7211890 . - . gene_id "RvY_02581"; transcript_id "RvY_02581.1"; Scaffold001 rebuild transcript 7212212 7212819 . - . gene_id "RvY_02582"; transcript_id "RvY_02582.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7212212 7212251 . - . gene_id "RvY_02582"; transcript_id "RvY_02582.1"; Scaffold001 rebuild exon 7212653 7212819 . - . gene_id "RvY_02582"; transcript_id "RvY_02582.1"; Scaffold001 rebuild transcript 7212594 7219701 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; gene_name "INTS1"; annotation "integrator complex subunit 1"; Pfam "[DUF3677]"; KO "K13138"; Scaffold001 rebuild exon 7212594 7212642 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7212726 7212776 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7212861 7213190 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7213271 7213485 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7213664 7213813 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7213913 7214256 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7214327 7214390 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7214727 7214840 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7214922 7215061 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7215150 7215309 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7215387 7215678 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7215829 7216021 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7216104 7216249 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7216470 7216664 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7216745 7216881 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7216953 7217080 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7217163 7217292 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7217450 7217818 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7218028 7218237 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7218461 7218799 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7219076 7219431 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild exon 7219497 7219701 . + . gene_id "RvY_02583"; transcript_id "RvY_02583.1"; Scaffold001 rebuild transcript 7220750 7221813 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7220750 7220999 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.1"; Scaffold001 rebuild exon 7221072 7221293 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.1"; Scaffold001 rebuild exon 7221457 7221676 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.1"; Scaffold001 rebuild exon 7221774 7221813 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.1"; Scaffold001 rebuild transcript 7220750 7221813 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7220750 7221293 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.2"; Scaffold001 rebuild exon 7221457 7221506 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.2"; Scaffold001 rebuild exon 7221582 7221676 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.2"; Scaffold001 rebuild exon 7221774 7221813 . - . gene_id "RvY_02584"; transcript_id "RvY_02584.2"; Scaffold001 rebuild transcript 7225738 7225959 . - . gene_id "RvY_02585"; transcript_id "RvY_02585.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7225738 7225959 . - . gene_id "RvY_02585"; transcript_id "RvY_02585.1"; Scaffold001 rebuild transcript 7228965 7229333 . + . gene_id "RvY_02586"; transcript_id "RvY_02586.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7228965 7229333 . + . gene_id "RvY_02586"; transcript_id "RvY_02586.1"; Scaffold001 rebuild transcript 7230255 7230386 . - . gene_id "RvY_02587"; transcript_id "RvY_02587.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7230255 7230386 . - . gene_id "RvY_02587"; transcript_id "RvY_02587.1"; Scaffold001 rebuild transcript 7240455 7244464 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[C1-set] Immunoglobulin C1-set domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 7240455 7240548 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7240661 7240840 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7240938 7241057 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7241524 7241841 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7242301 7242561 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7242909 7243457 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7243646 7243771 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild exon 7243989 7244464 . + . gene_id "RvY_02588"; transcript_id "RvY_02588.1"; Scaffold001 rebuild transcript 7245228 7246125 . - . gene_id "RvY_02589"; transcript_id "RvY_02589.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7245228 7245349 . - . gene_id "RvY_02589"; transcript_id "RvY_02589.1"; Scaffold001 rebuild exon 7245933 7246125 . - . gene_id "RvY_02589"; transcript_id "RvY_02589.1"; Scaffold001 rebuild transcript 7246043 7246730 . + . gene_id "RvY_02590"; transcript_id "RvY_02590.1"; gene_name "COG1485"; annotation "hypothetical protein."; Pfam "[AFG1_ATPase] AFG1-like ATPase"; CDD "Predicted ATPase [General function prediction only]"; similar_genes "LACE1_HUMAN(e-value:1.6e-13;bit-score:74.0)"; Scaffold001 rebuild exon 7246043 7246169 . + . gene_id "RvY_02590"; transcript_id "RvY_02590.1"; Scaffold001 rebuild exon 7246234 7246491 . + . gene_id "RvY_02590"; transcript_id "RvY_02590.1"; Scaffold001 rebuild exon 7246561 7246730 . + . gene_id "RvY_02590"; transcript_id "RvY_02590.1"; Scaffold001 rebuild transcript 7246739 7248096 . + . gene_id "RvY_02591"; transcript_id "RvY_02591.1"; gene_name "K06916"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[AFG1_ATPase] AFG1-like ATPase"; CDD "Predicted ATPase [General function prediction only]"; KO "K06916"; similar_genes "LACE1_MOUSE(e-value:4.4e-24;bit-score:109.0)"; Scaffold001 rebuild exon 7246739 7247042 . + . gene_id "RvY_02591"; transcript_id "RvY_02591.1"; Scaffold001 rebuild exon 7247122 7247266 . + . gene_id "RvY_02591"; transcript_id "RvY_02591.1"; Scaffold001 rebuild exon 7247358 7247529 . + . gene_id "RvY_02591"; transcript_id "RvY_02591.1"; Scaffold001 rebuild exon 7247636 7247902 . + . gene_id "RvY_02591"; transcript_id "RvY_02591.1"; Scaffold001 rebuild exon 7247977 7248096 . + . gene_id "RvY_02591"; transcript_id "RvY_02591.1"; Scaffold001 rebuild transcript 7249176 7250300 . - . gene_id "RvY_02592"; transcript_id "RvY_02592.1"; gene_name "VTI1"; annotation "vesicle transport through interaction with t-SNAREs 1"; Pfam "[V-SNARE] Vesicle transport v-SNARE protein N-terminus|[V-SNARE_C] Snare region anchored in the vesicle membrane C-terminus"; KO "K08493"; Scaffold001 rebuild exon 7249176 7249275 . - . gene_id "RvY_02592"; transcript_id "RvY_02592.1"; Scaffold001 rebuild exon 7249375 7249436 . - . gene_id "RvY_02592"; transcript_id "RvY_02592.1"; Scaffold001 rebuild exon 7249506 7249679 . - . gene_id "RvY_02592"; transcript_id "RvY_02592.1"; Scaffold001 rebuild exon 7249854 7250113 . - . gene_id "RvY_02592"; transcript_id "RvY_02592.1"; Scaffold001 rebuild exon 7250186 7250300 . - . gene_id "RvY_02592"; transcript_id "RvY_02592.1"; Scaffold001 rebuild transcript 7250986 7251808 . + . gene_id "RvY_02593"; transcript_id "RvY_02593.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7250986 7251021 . + . gene_id "RvY_02593"; transcript_id "RvY_02593.1"; Scaffold001 rebuild exon 7251182 7251808 . + . gene_id "RvY_02593"; transcript_id "RvY_02593.1"; Scaffold001 rebuild transcript 7252460 7254335 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; gene_name "Aldo_ket_red"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; CDD "Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others."; Scaffold001 rebuild exon 7252460 7252597 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild exon 7252811 7253059 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild exon 7253307 7253465 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild exon 7253562 7253740 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild exon 7253839 7253890 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild exon 7253991 7254152 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild exon 7254240 7254335 . + . gene_id "RvY_02594"; transcript_id "RvY_02594.1"; Scaffold001 rebuild transcript 7254502 7256314 . - . gene_id "RvY_02595"; transcript_id "RvY_02595.1"; gene_name "2A0110"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Nuc_H_symport] Nucleoside H+ symporter|[LacY_symp] LacY proton/sugar symporter|[MFS_1_like] MFS_1 like family"; CDD "nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli."; Scaffold001 rebuild exon 7254502 7254680 . - . gene_id "RvY_02595"; transcript_id "RvY_02595.1"; Scaffold001 rebuild exon 7254752 7255143 . - . gene_id "RvY_02595"; transcript_id "RvY_02595.1"; Scaffold001 rebuild exon 7255313 7256132 . - . gene_id "RvY_02595"; transcript_id "RvY_02595.1"; Scaffold001 rebuild exon 7256203 7256314 . - . gene_id "RvY_02595"; transcript_id "RvY_02595.1"; Scaffold001 rebuild transcript 7258502 7259335 . - . gene_id "RvY_02596"; transcript_id "RvY_02596.1"; annotation "hypothetical protein."; Pfam "[DUF883] Bacterial protein of unknown function (DUF883)|[Apolipoprotein] Apolipoprotein A1/A4/E domain|[YtxH] YtxH-like protein"; Scaffold001 rebuild exon 7258502 7258699 . - . gene_id "RvY_02596"; transcript_id "RvY_02596.1"; Scaffold001 rebuild exon 7258940 7259335 . - . gene_id "RvY_02596"; transcript_id "RvY_02596.1"; Scaffold001 rebuild transcript 7260015 7263036 . + . gene_id "RvY_02597"; transcript_id "RvY_02597.1"; gene_name "Menin"; annotation "hypothetical protein."; Pfam "[Menin]"; CDD "Menin. MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23."; KO "K14970"; Scaffold001 rebuild exon 7260015 7260525 . + . gene_id "RvY_02597"; transcript_id "RvY_02597.1"; Scaffold001 rebuild exon 7260598 7260762 . + . gene_id "RvY_02597"; transcript_id "RvY_02597.1"; Scaffold001 rebuild exon 7260862 7261093 . + . gene_id "RvY_02597"; transcript_id "RvY_02597.1"; Scaffold001 rebuild exon 7261373 7261635 . + . gene_id "RvY_02597"; transcript_id "RvY_02597.1"; Scaffold001 rebuild exon 7262006 7263036 . + . gene_id "RvY_02597"; transcript_id "RvY_02597.1"; Scaffold001 rebuild transcript 7263637 7266236 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7263637 7264036 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild exon 7264137 7264256 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild exon 7264308 7264816 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild exon 7264958 7265088 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild exon 7265169 7265498 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild exon 7265637 7265859 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild exon 7266084 7266236 . - . gene_id "RvY_02598"; transcript_id "RvY_02598.1"; Scaffold001 rebuild transcript 7267036 7267263 . - . gene_id "RvY_02599"; transcript_id "RvY_02599.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7267036 7267263 . - . gene_id "RvY_02599"; transcript_id "RvY_02599.1"; Scaffold001 rebuild transcript 7267490 7271222 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; gene_name "NFATC"; annotation "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent"; Pfam "[RHD] Rel homology domain (RHD)"; CDD "N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt."; KO "K04446"; Scaffold001 rebuild exon 7267490 7267890 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7268278 7268366 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7268586 7268656 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7268755 7268945 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7269205 7269386 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7269575 7269715 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7269794 7269861 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7270144 7270258 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild exon 7270513 7271222 . + . gene_id "RvY_02600"; transcript_id "RvY_02600.1"; Scaffold001 rebuild transcript 7271303 7271521 . - . gene_id "RvY_02601"; transcript_id "RvY_02601.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7271303 7271521 . - . gene_id "RvY_02601"; transcript_id "RvY_02601.1"; Scaffold001 rebuild transcript 7272101 7273289 . + . gene_id "RvY_02602"; transcript_id "RvY_02602.1"; gene_name "ANT"; annotation "ADP,ATP carrier protein 1"; Pfam "[Mito_carr] Mitochondrial carrier protein"; CDD "ADP/ATP transporter on adenylate translocase; Provisional"; KO "K05863"; similar_genes "ADT1_ANOGA(e-value:5.9e-79;bit-score:291.0)"; Scaffold001 rebuild exon 7272101 7272548 . + . gene_id "RvY_02602"; transcript_id "RvY_02602.1"; Scaffold001 rebuild exon 7272808 7273289 . + . gene_id "RvY_02602"; transcript_id "RvY_02602.1"; Scaffold001 rebuild transcript 7273906 7278634 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; gene_name "2a30"; annotation "putative Solute carrier family 12 member 9"; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "K-Cl cotransporter."; KO "K14429"; similar_genes "S12A9_XENLA(e-value:1.1e-35;bit-score:148.0)"; Scaffold001 rebuild exon 7273906 7274341 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7274758 7275159 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7275378 7275516 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7275595 7276048 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7276297 7276537 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7276778 7277000 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7277072 7277196 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7277277 7277466 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7277675 7277809 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7277952 7278086 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7278256 7278511 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild exon 7278587 7278634 . - . gene_id "RvY_02603"; transcript_id "RvY_02603.1"; Scaffold001 rebuild transcript 7278273 7278515 . + . gene_id "RvY_02604"; transcript_id "RvY_02604.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7278273 7278515 . + . gene_id "RvY_02604"; transcript_id "RvY_02604.1"; Scaffold001 rebuild transcript 7279468 7280476 . + . gene_id "RvY_02605"; transcript_id "RvY_02605.1"; gene_name "PAP2_containing_2_like"; annotation "hypothetical protein."; Pfam "[PAP2] PAP2 superfamily"; CDD "PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase."; Scaffold001 rebuild exon 7279468 7279792 . + . gene_id "RvY_02605"; transcript_id "RvY_02605.1"; Scaffold001 rebuild exon 7280023 7280216 . + . gene_id "RvY_02605"; transcript_id "RvY_02605.1"; Scaffold001 rebuild exon 7280285 7280476 . + . gene_id "RvY_02605"; transcript_id "RvY_02605.1"; Scaffold001 rebuild transcript 7280923 7282072 . - . gene_id "RvY_02606"; transcript_id "RvY_02606.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7280923 7280991 . - . gene_id "RvY_02606"; transcript_id "RvY_02606.1"; Scaffold001 rebuild exon 7281213 7281321 . - . gene_id "RvY_02606"; transcript_id "RvY_02606.1"; Scaffold001 rebuild exon 7281387 7281579 . - . gene_id "RvY_02606"; transcript_id "RvY_02606.1"; Scaffold001 rebuild exon 7281653 7281936 . - . gene_id "RvY_02606"; transcript_id "RvY_02606.1"; Scaffold001 rebuild exon 7281993 7282072 . - . gene_id "RvY_02606"; transcript_id "RvY_02606.1"; Scaffold001 rebuild transcript 7283412 7284132 . - . gene_id "RvY_02607"; transcript_id "RvY_02607.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7283412 7283739 . - . gene_id "RvY_02607"; transcript_id "RvY_02607.1"; Scaffold001 rebuild exon 7283924 7284132 . - . gene_id "RvY_02607"; transcript_id "RvY_02607.1"; Scaffold001 rebuild transcript 7287312 7288497 . - . gene_id "RvY_02608"; transcript_id "RvY_02608.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 7287312 7288370 . - . gene_id "RvY_02608"; transcript_id "RvY_02608.1"; Scaffold001 rebuild exon 7288477 7288497 . - . gene_id "RvY_02608"; transcript_id "RvY_02608.1"; Scaffold001 rebuild transcript 7293856 7294757 . + . gene_id "RvY_02609"; transcript_id "RvY_02609.1"; gene_name "RP-L12e"; annotation "60S ribosomal protein L12"; Pfam "[Ribosomal_L11_N] Ribosomal protein L11, N-terminal domain|[Ribosomal_L11] Ribosomal protein L11, RNA binding domain"; CDD "60S ribosomal protein L12; Provisional"; KO "K02870"; similar_genes "RL12_CAEBR(e-value:2.2e-70;bit-score:263.0)"; Scaffold001 rebuild exon 7293856 7293892 . + . gene_id "RvY_02609"; transcript_id "RvY_02609.1"; Scaffold001 rebuild exon 7293999 7294072 . + . gene_id "RvY_02609"; transcript_id "RvY_02609.1"; Scaffold001 rebuild exon 7294148 7294328 . + . gene_id "RvY_02609"; transcript_id "RvY_02609.1"; Scaffold001 rebuild exon 7294552 7294757 . + . gene_id "RvY_02609"; transcript_id "RvY_02609.1"; Scaffold001 rebuild transcript 7295335 7296228 . - . gene_id "RvY_02610"; transcript_id "RvY_02610.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7295335 7296115 . - . gene_id "RvY_02610"; transcript_id "RvY_02610.1"; Scaffold001 rebuild exon 7296194 7296228 . - . gene_id "RvY_02610"; transcript_id "RvY_02610.1"; Scaffold001 rebuild transcript 7297144 7299091 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7297144 7297816 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.1"; Scaffold001 rebuild exon 7297881 7298036 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.1"; Scaffold001 rebuild exon 7298149 7298436 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.1"; Scaffold001 rebuild exon 7298961 7299091 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.1"; Scaffold001 rebuild transcript 7297144 7297935 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7297144 7297935 . + . gene_id "RvY_02611"; transcript_id "RvY_02611.2"; Scaffold001 rebuild transcript 7300553 7302067 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7300553 7300612 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.1"; Scaffold001 rebuild exon 7300697 7301021 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.1"; Scaffold001 rebuild exon 7301244 7301344 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.1"; Scaffold001 rebuild exon 7301945 7302067 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.1"; Scaffold001 rebuild transcript 7300342 7301109 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7300342 7300593 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.2"; Scaffold001 rebuild exon 7300697 7301021 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.2"; Scaffold001 rebuild exon 7301102 7301109 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.2"; Scaffold001 rebuild transcript 7300553 7301068 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7300553 7300612 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.3"; Scaffold001 rebuild exon 7300697 7301068 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.3"; Scaffold001 rebuild transcript 7300553 7301109 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7300553 7300612 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.4"; Scaffold001 rebuild exon 7300697 7301021 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.4"; Scaffold001 rebuild exon 7301102 7301109 . + . gene_id "RvY_02612"; transcript_id "RvY_02612.4"; Scaffold001 rebuild transcript 7302783 7307063 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; annotation "hypothetical protein."; Pfam "[Hemopexin]|[PG_binding_1] Putative peptidoglycan binding domain|[Peptidase_M10] Matrixin"; EC "EC3.4.24.-"; similar_genes "MMP20_HUMAN(e-value:8.9e-10;bit-score:62.0)"; Scaffold001 rebuild exon 7302783 7302893 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild exon 7304171 7304297 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild exon 7304640 7304869 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild exon 7305301 7305701 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild exon 7305986 7306551 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild exon 7306681 7306856 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild exon 7306926 7307063 . + . gene_id "RvY_02613"; transcript_id "RvY_02613.1"; Scaffold001 rebuild transcript 7307554 7308382 . + . gene_id "RvY_02614"; transcript_id "RvY_02614.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7307554 7307791 . + . gene_id "RvY_02614"; transcript_id "RvY_02614.1"; Scaffold001 rebuild exon 7307946 7308382 . + . gene_id "RvY_02614"; transcript_id "RvY_02614.1"; Scaffold001 rebuild transcript 7308673 7309158 . + . gene_id "RvY_02615"; transcript_id "RvY_02615.1"; annotation "hypothetical protein."; Pfam "[Barwin] Barwin family|[DPBB_1] Rare lipoprotein A (RlpA)-like double-psi beta-barrel"; Scaffold001 rebuild exon 7308673 7308709 . + . gene_id "RvY_02615"; transcript_id "RvY_02615.1"; Scaffold001 rebuild exon 7308788 7309158 . + . gene_id "RvY_02615"; transcript_id "RvY_02615.1"; Scaffold001 rebuild transcript 7309799 7311938 . + . gene_id "RvY_02616"; transcript_id "RvY_02616.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 7309799 7310929 . + . gene_id "RvY_02616"; transcript_id "RvY_02616.1"; Scaffold001 rebuild exon 7311108 7311938 . + . gene_id "RvY_02616"; transcript_id "RvY_02616.1"; Scaffold001 rebuild transcript 7312859 7326520 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7312859 7312959 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.1"; Scaffold001 rebuild exon 7315489 7315682 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.1"; Scaffold001 rebuild exon 7317445 7317791 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.1"; Scaffold001 rebuild exon 7321466 7321617 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.1"; Scaffold001 rebuild exon 7326394 7326520 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.1"; Scaffold001 rebuild transcript 7312859 7329170 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7312859 7312959 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.2"; Scaffold001 rebuild exon 7315489 7315682 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.2"; Scaffold001 rebuild exon 7317445 7317791 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.2"; Scaffold001 rebuild exon 7321466 7321617 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.2"; Scaffold001 rebuild exon 7329158 7329170 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.2"; Scaffold001 rebuild transcript 7312859 7321621 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7312859 7312959 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.3"; Scaffold001 rebuild exon 7315489 7315682 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.3"; Scaffold001 rebuild exon 7317445 7317791 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.3"; Scaffold001 rebuild exon 7321466 7321621 . + . gene_id "RvY_02617"; transcript_id "RvY_02617.3"; Scaffold001 rebuild transcript 7328983 7329590 . - . gene_id "RvY_02618"; transcript_id "RvY_02618.1"; product "SAHS12"; annotation "SAHS_c10 | hypothetical protein."; Scaffold001 rebuild exon 7328983 7329039 . - . gene_id "RvY_02618"; transcript_id "RvY_02618.1"; Scaffold001 rebuild exon 7329127 7329291 . - . gene_id "RvY_02618"; transcript_id "RvY_02618.1"; Scaffold001 rebuild exon 7329480 7329590 . - . gene_id "RvY_02618"; transcript_id "RvY_02618.1"; Scaffold001 rebuild transcript 7329650 7330767 . - . gene_id "RvY_02619"; transcript_id "RvY_02619.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7329650 7329957 . - . gene_id "RvY_02619"; transcript_id "RvY_02619.1"; Scaffold001 rebuild exon 7330635 7330767 . - . gene_id "RvY_02619"; transcript_id "RvY_02619.1"; Scaffold001 rebuild transcript 7331459 7331932 . + . gene_id "RvY_02620"; transcript_id "RvY_02620.1"; annotation "hypothetical protein."; Pfam "[Synaptobrevin]"; similar_genes "SYB_LOLPE(e-value:1.1e-22;bit-score:104.0)"; Scaffold001 rebuild exon 7331459 7331932 . + . gene_id "RvY_02620"; transcript_id "RvY_02620.1"; Scaffold001 rebuild transcript 7332703 7337298 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; gene_name "SPEC"; annotation "hypothetical protein."; CDD "Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here"; Scaffold001 rebuild exon 7332703 7332852 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7333049 7333249 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7334476 7334667 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7334737 7335252 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7335485 7335715 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7335977 7336067 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7336722 7336836 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild exon 7337022 7337298 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.1"; Scaffold001 rebuild transcript 7332703 7337514 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; gene_name "SPEC"; annotation "hypothetical protein."; CDD "Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here"; Scaffold001 rebuild exon 7332703 7332852 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7333049 7333249 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7334476 7334667 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7334737 7335252 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7335485 7335715 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7335977 7336067 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7336722 7336836 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7337022 7337156 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild exon 7337493 7337514 . - . gene_id "RvY_02621"; transcript_id "RvY_02621.2"; Scaffold001 rebuild transcript 7338088 7338471 . - . gene_id "RvY_02622"; transcript_id "RvY_02622.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7338088 7338471 . - . gene_id "RvY_02622"; transcript_id "RvY_02622.1"; Scaffold001 rebuild transcript 7339464 7340770 . + . gene_id "RvY_02623"; transcript_id "RvY_02623.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7339464 7339994 . + . gene_id "RvY_02623"; transcript_id "RvY_02623.1"; Scaffold001 rebuild exon 7340335 7340487 . + . gene_id "RvY_02623"; transcript_id "RvY_02623.1"; Scaffold001 rebuild exon 7340573 7340770 . + . gene_id "RvY_02623"; transcript_id "RvY_02623.1"; Scaffold001 rebuild transcript 7341058 7341572 . - . gene_id "RvY_02624"; transcript_id "RvY_02624.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7341058 7341275 . - . gene_id "RvY_02624"; transcript_id "RvY_02624.1"; Scaffold001 rebuild exon 7341542 7341572 . - . gene_id "RvY_02624"; transcript_id "RvY_02624.1"; Scaffold001 rebuild transcript 7341843 7343002 . - . gene_id "RvY_02625"; transcript_id "RvY_02625.1"; gene_name "SOX-TCF_HMG-box"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; similar_genes "SOX14_XENTR(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 7341843 7342376 . - . gene_id "RvY_02625"; transcript_id "RvY_02625.1"; Scaffold001 rebuild exon 7342596 7342769 . - . gene_id "RvY_02625"; transcript_id "RvY_02625.1"; Scaffold001 rebuild exon 7342889 7343002 . - . gene_id "RvY_02625"; transcript_id "RvY_02625.1"; Scaffold001 rebuild transcript 7347990 7352089 . + . gene_id "RvY_02626"; transcript_id "RvY_02626.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7347990 7348095 . + . gene_id "RvY_02626"; transcript_id "RvY_02626.1"; Scaffold001 rebuild exon 7351716 7352089 . + . gene_id "RvY_02626"; transcript_id "RvY_02626.1"; Scaffold001 rebuild transcript 7348356 7349969 . - . gene_id "RvY_02627"; transcript_id "RvY_02627.1"; gene_name "PP2Ac"; annotation "Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "PP2BA_MOUSE(e-value:6.4e-106;bit-score:381.0)"; Scaffold001 rebuild exon 7348356 7348527 . - . gene_id "RvY_02627"; transcript_id "RvY_02627.1"; Scaffold001 rebuild exon 7348644 7348764 . - . gene_id "RvY_02627"; transcript_id "RvY_02627.1"; Scaffold001 rebuild exon 7348830 7348856 . - . gene_id "RvY_02627"; transcript_id "RvY_02627.1"; Scaffold001 rebuild exon 7348935 7349481 . - . gene_id "RvY_02627"; transcript_id "RvY_02627.1"; Scaffold001 rebuild exon 7349715 7349969 . - . gene_id "RvY_02627"; transcript_id "RvY_02627.1"; Scaffold001 rebuild transcript 7352316 7354265 . + . gene_id "RvY_02628"; transcript_id "RvY_02628.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7352316 7352516 . + . gene_id "RvY_02628"; transcript_id "RvY_02628.1"; Scaffold001 rebuild exon 7352790 7353023 . + . gene_id "RvY_02628"; transcript_id "RvY_02628.1"; Scaffold001 rebuild exon 7353311 7353455 . + . gene_id "RvY_02628"; transcript_id "RvY_02628.1"; Scaffold001 rebuild exon 7353726 7353878 . + . gene_id "RvY_02628"; transcript_id "RvY_02628.1"; Scaffold001 rebuild exon 7354087 7354265 . + . gene_id "RvY_02628"; transcript_id "RvY_02628.1"; Scaffold001 rebuild transcript 7354533 7354947 . - . gene_id "RvY_02629"; transcript_id "RvY_02629.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7354533 7354777 . - . gene_id "RvY_02629"; transcript_id "RvY_02629.1"; Scaffold001 rebuild exon 7354884 7354947 . - . gene_id "RvY_02629"; transcript_id "RvY_02629.1"; Scaffold001 rebuild transcript 7355907 7357876 . + . gene_id "RvY_02630"; transcript_id "RvY_02630.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; KO "K14613"; Scaffold001 rebuild exon 7355907 7356366 . + . gene_id "RvY_02630"; transcript_id "RvY_02630.1"; Scaffold001 rebuild exon 7356598 7357194 . + . gene_id "RvY_02630"; transcript_id "RvY_02630.1"; Scaffold001 rebuild exon 7357368 7357876 . + . gene_id "RvY_02630"; transcript_id "RvY_02630.1"; Scaffold001 rebuild transcript 7358642 7360631 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7358642 7358926 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7358998 7359075 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7359207 7359287 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7359351 7359437 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7359511 7359579 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7359696 7359782 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7359871 7359972 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7360056 7360241 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7360345 7360415 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild exon 7360541 7360631 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.1"; Scaffold001 rebuild transcript 7358642 7359528 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7358642 7358926 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.2"; Scaffold001 rebuild exon 7358998 7359075 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.2"; Scaffold001 rebuild exon 7359207 7359437 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.2"; Scaffold001 rebuild exon 7359511 7359528 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.2"; Scaffold001 rebuild transcript 7359428 7360631 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7359428 7359437 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild exon 7359511 7359579 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild exon 7359703 7359782 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild exon 7359871 7359972 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild exon 7360056 7360241 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild exon 7360345 7360415 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild exon 7360541 7360631 . - . gene_id "RvY_02631"; transcript_id "RvY_02631.3"; Scaffold001 rebuild transcript 7360858 7363130 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7360858 7361241 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7361315 7361395 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7361536 7361622 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7361696 7361782 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7361894 7361968 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7362035 7362241 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7362338 7362463 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7362573 7362764 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7362854 7362942 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild exon 7363004 7363130 . - . gene_id "RvY_02632"; transcript_id "RvY_02632.1"; Scaffold001 rebuild transcript 7364053 7365572 . + . gene_id "RvY_02633"; transcript_id "RvY_02633.1"; gene_name "HMG-box"; annotation "hypothetical protein."; Pfam "[HMG_box] HMG (high mobility group) box"; CDD "High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions."; Scaffold001 rebuild exon 7364053 7364184 . + . gene_id "RvY_02633"; transcript_id "RvY_02633.1"; Scaffold001 rebuild exon 7364263 7364653 . + . gene_id "RvY_02633"; transcript_id "RvY_02633.1"; Scaffold001 rebuild exon 7364941 7365572 . + . gene_id "RvY_02633"; transcript_id "RvY_02633.1"; Scaffold001 rebuild transcript 7366308 7368032 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; gene_name "ISY1"; annotation "pre-mRNA-splicing factor ISY1"; Pfam "[Isy1] Isy1-like splicing family"; KO "K12870"; similar_genes "ISY1_MOUSE(e-value:7.6e-24;bit-score:108.0)"; Scaffold001 rebuild exon 7366308 7366310 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7366367 7366389 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7366509 7366563 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7366640 7366748 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7367005 7367117 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7367202 7367468 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7367670 7367840 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild exon 7367919 7368032 . + . gene_id "RvY_02634"; transcript_id "RvY_02634.1"; Scaffold001 rebuild transcript 7369393 7373772 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.11"; similar_genes "MMEL1_RAT(e-value:2.2e-19;bit-score:93.0)"; Scaffold001 rebuild exon 7369393 7369471 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7369603 7369713 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7369921 7370082 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7370297 7370377 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7370670 7371070 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7371441 7371929 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7372154 7372333 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7372399 7372561 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7372624 7372743 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7372803 7372993 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7373068 7373172 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild exon 7373596 7373772 . + . gene_id "RvY_02635"; transcript_id "RvY_02635.1"; Scaffold001 rebuild transcript 7376000 7376320 . - . gene_id "RvY_02636"; transcript_id "RvY_02636.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7376000 7376320 . - . gene_id "RvY_02636"; transcript_id "RvY_02636.1"; Scaffold001 rebuild transcript 7376320 7376664 . - . gene_id "RvY_02637"; transcript_id "RvY_02637.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7376320 7376664 . - . gene_id "RvY_02637"; transcript_id "RvY_02637.1"; Scaffold001 rebuild transcript 7376687 7376872 . + . gene_id "RvY_02638"; transcript_id "RvY_02638.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7376687 7376872 . + . gene_id "RvY_02638"; transcript_id "RvY_02638.1"; Scaffold001 rebuild transcript 7378888 7380521 . + . gene_id "RvY_02639"; transcript_id "RvY_02639.1"; gene_name "COG3889"; annotation "putative Integumentary mucin C.1"; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:4.5e-26;bit-score:116.0)"; Scaffold001 rebuild exon 7378888 7378972 . + . gene_id "RvY_02639"; transcript_id "RvY_02639.1"; Scaffold001 rebuild exon 7379064 7379123 . + . gene_id "RvY_02639"; transcript_id "RvY_02639.1"; Scaffold001 rebuild exon 7379199 7379324 . + . gene_id "RvY_02639"; transcript_id "RvY_02639.1"; Scaffold001 rebuild exon 7379383 7380521 . + . gene_id "RvY_02639"; transcript_id "RvY_02639.1"; Scaffold001 rebuild transcript 7379981 7380337 . - . gene_id "RvY_02640"; transcript_id "RvY_02640.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7379981 7380337 . - . gene_id "RvY_02640"; transcript_id "RvY_02640.1"; Scaffold001 rebuild transcript 7382575 7384622 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.1"; gene_name "(1)COG3889"; annotation "hypothetical protein."; CDD "(1)Predicted solute binding protein [General function prediction only]"; Scaffold001 rebuild exon 7382575 7382677 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.1"; Scaffold001 rebuild exon 7382790 7382849 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.1"; Scaffold001 rebuild exon 7382960 7383085 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.1"; Scaffold001 rebuild exon 7383166 7384622 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.1"; Scaffold001 rebuild transcript 7383072 7384120 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.2"; gene_name "(1)COG3889"; annotation "hypothetical protein."; CDD "(1)Predicted solute binding protein [General function prediction only]"; Scaffold001 rebuild exon 7383072 7383085 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.2"; Scaffold001 rebuild exon 7383166 7384120 . + . gene_id "RvY_02641"; transcript_id "RvY_02641.2"; Scaffold001 rebuild transcript 7385265 7386952 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7385265 7385721 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.1"; Scaffold001 rebuild exon 7385810 7386016 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.1"; Scaffold001 rebuild exon 7386098 7386277 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.1"; Scaffold001 rebuild exon 7386498 7386952 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.1"; Scaffold001 rebuild transcript 7385265 7386075 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7385265 7385721 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.2"; Scaffold001 rebuild exon 7385810 7386075 . + . gene_id "RvY_02642"; transcript_id "RvY_02642.2"; Scaffold001 rebuild transcript 7387704 7389557 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.1"; gene_name "ROM1"; annotation "hypothetical protein."; CDD "RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]"; similar_genes "WSC3_YEAST(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 7387704 7387785 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.1"; Scaffold001 rebuild exon 7387909 7387998 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.1"; Scaffold001 rebuild exon 7388069 7388194 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.1"; Scaffold001 rebuild exon 7388293 7389557 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.1"; Scaffold001 rebuild transcript 7387704 7389524 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.2"; gene_name "ROM1"; annotation "hypothetical protein."; CDD "RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]"; similar_genes "WSC3_YEAST(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 7387704 7387785 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.2"; Scaffold001 rebuild exon 7387909 7387998 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.2"; Scaffold001 rebuild exon 7388069 7388194 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.2"; Scaffold001 rebuild exon 7388293 7389524 . + . gene_id "RvY_02643"; transcript_id "RvY_02643.2"; Scaffold001 rebuild transcript 7391886 7414876 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; product "DNA dependent Protein Kinase catalytic subunit"; gene_name "PRKDC"; annotation "DNA dependent Protein Kinase catalytic subunit | putative DNA-dependent protein kinase catalytic subunit"; Pfam "[FATC]|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase|[NUC194]"; CDD "DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double strand breaks (DSBs) by joining together two free DNA ends of little homology. DNA-PK functions as a molecular sensor for DNA damage that enhances the signal via phosphorylation of downstream targets. It may also act as a protein scaffold that aids the localization of DNA repair proteins to the site of DNA damage. DNA-PK also plays a role in the maintenance of telomeric stability and the prevention of chromosomal end fusion."; EC "EC2.7.11.1"; KO "K06642"; similar_genes "PRKDC_DICDI(e-value:1.8e-31;bit-score:134.0)"; Scaffold001 rebuild exon 7391886 7392202 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7392406 7392577 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7392703 7392875 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7392950 7393117 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7393193 7393400 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7393479 7393634 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7393749 7394060 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7394360 7394813 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7395366 7395604 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7395664 7395951 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7396233 7396435 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7396706 7397140 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7397396 7397627 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7397906 7398256 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7398487 7398891 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7399175 7399534 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7399816 7400103 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7400275 7400464 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7400531 7400889 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7401121 7401348 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7401460 7401867 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7402138 7402334 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7402500 7402862 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7403062 7403377 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7403606 7404019 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7405734 7407198 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7408861 7409210 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7409803 7410110 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7410298 7410466 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7410615 7411042 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7411327 7411993 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7412173 7412315 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7412384 7412623 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7412836 7413094 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7413347 7413597 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7413662 7413752 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7413875 7413987 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7414058 7414244 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7414324 7414443 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7414568 7414644 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild exon 7414720 7414876 . - . gene_id "RvY_02644"; transcript_id "RvY_02644.1"; Scaffold001 rebuild transcript 7415501 7416466 . - . gene_id "RvY_02645"; transcript_id "RvY_02645.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7415501 7416466 . - . gene_id "RvY_02645"; transcript_id "RvY_02645.1"; Scaffold001 rebuild transcript 7417623 7418038 . + . gene_id "RvY_02646"; transcript_id "RvY_02646.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7417623 7417736 . + . gene_id "RvY_02646"; transcript_id "RvY_02646.1"; Scaffold001 rebuild exon 7417898 7418038 . + . gene_id "RvY_02646"; transcript_id "RvY_02646.1"; Scaffold001 rebuild transcript 7418361 7419053 . - . gene_id "RvY_02647"; transcript_id "RvY_02647.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7418361 7419053 . - . gene_id "RvY_02647"; transcript_id "RvY_02647.1"; Scaffold001 rebuild transcript 7418361 7419053 . - . gene_id "RvY_02647"; transcript_id "RvY_02647.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7418361 7418717 . - . gene_id "RvY_02647"; transcript_id "RvY_02647.2"; Scaffold001 rebuild exon 7418778 7419053 . - . gene_id "RvY_02647"; transcript_id "RvY_02647.2"; Scaffold001 rebuild transcript 7420158 7420589 . + . gene_id "RvY_02648"; transcript_id "RvY_02648.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7420158 7420332 . + . gene_id "RvY_02648"; transcript_id "RvY_02648.1"; Scaffold001 rebuild exon 7420408 7420589 . + . gene_id "RvY_02648"; transcript_id "RvY_02648.1"; Scaffold001 rebuild transcript 7422096 7423238 . - . gene_id "RvY_02649"; transcript_id "RvY_02649.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 7422096 7422192 . - . gene_id "RvY_02649"; transcript_id "RvY_02649.1"; Scaffold001 rebuild exon 7422462 7422511 . - . gene_id "RvY_02649"; transcript_id "RvY_02649.1"; Scaffold001 rebuild exon 7422587 7422858 . - . gene_id "RvY_02649"; transcript_id "RvY_02649.1"; Scaffold001 rebuild exon 7423003 7423123 . - . gene_id "RvY_02649"; transcript_id "RvY_02649.1"; Scaffold001 rebuild exon 7423194 7423238 . - . gene_id "RvY_02649"; transcript_id "RvY_02649.1"; Scaffold001 rebuild transcript 7424333 7429737 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 7424333 7425042 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7425189 7425263 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7425379 7425492 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7425579 7425701 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7425790 7425957 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7426171 7426407 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7426676 7427140 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7427353 7427436 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7427514 7427830 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7428074 7428640 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7428959 7429271 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7429352 7429445 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild exon 7429675 7429737 . - . gene_id "RvY_02650"; transcript_id "RvY_02650.1"; Scaffold001 rebuild transcript 7429643 7429813 . + . gene_id "RvY_02651"; transcript_id "RvY_02651.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7429643 7429813 . + . gene_id "RvY_02651"; transcript_id "RvY_02651.1"; Scaffold001 rebuild transcript 7430610 7431193 . + . gene_id "RvY_02652"; transcript_id "RvY_02652.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7430610 7430696 . + . gene_id "RvY_02652"; transcript_id "RvY_02652.1"; Scaffold001 rebuild exon 7431158 7431193 . + . gene_id "RvY_02652"; transcript_id "RvY_02652.1"; Scaffold001 rebuild transcript 7433239 7434108 . - . gene_id "RvY_02653"; transcript_id "RvY_02653.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7433239 7433495 . - . gene_id "RvY_02653"; transcript_id "RvY_02653.1"; Scaffold001 rebuild exon 7433751 7434108 . - . gene_id "RvY_02653"; transcript_id "RvY_02653.1"; Scaffold001 rebuild transcript 7434992 7438330 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; gene_name "CDH1"; annotation "Fizzy-related protein homolog"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K03364"; similar_genes "FZR_MOUSE(e-value:3.9e-61;bit-score:232.0)"; Scaffold001 rebuild exon 7434992 7434998 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7435193 7435350 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7435595 7435966 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7436030 7436134 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7436219 7436374 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7436657 7436825 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7436912 7437033 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7437462 7437872 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild exon 7438196 7438330 . + . gene_id "RvY_02654"; transcript_id "RvY_02654.1"; Scaffold001 rebuild transcript 7438994 7439542 . - . gene_id "RvY_02655"; transcript_id "RvY_02655.1"; gene_name "SNU13"; annotation "putative NHP2-like protein 1 homolog"; Pfam "[Ribosomal_L7Ae] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family"; CDD "50S ribosomal protein L7Ae; Validated"; KO "K12845"; similar_genes "NH2L1_CAEEL(e-value:3.1e-48;bit-score:189.0)"; Scaffold001 rebuild exon 7438994 7439256 . - . gene_id "RvY_02655"; transcript_id "RvY_02655.1"; Scaffold001 rebuild exon 7439322 7439448 . - . gene_id "RvY_02655"; transcript_id "RvY_02655.1"; Scaffold001 rebuild exon 7439540 7439542 . - . gene_id "RvY_02655"; transcript_id "RvY_02655.1"; Scaffold001 rebuild transcript 7440318 7440734 . + . gene_id "RvY_02656"; transcript_id "RvY_02656.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7440318 7440734 . + . gene_id "RvY_02656"; transcript_id "RvY_02656.1"; Scaffold001 rebuild transcript 7441777 7443568 . - . gene_id "RvY_02657"; transcript_id "RvY_02657.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7441777 7441938 . - . gene_id "RvY_02657"; transcript_id "RvY_02657.1"; Scaffold001 rebuild exon 7442027 7442180 . - . gene_id "RvY_02657"; transcript_id "RvY_02657.1"; Scaffold001 rebuild exon 7443372 7443568 . - . gene_id "RvY_02657"; transcript_id "RvY_02657.1"; Scaffold001 rebuild transcript 7445098 7445382 . + . gene_id "RvY_02658"; transcript_id "RvY_02658.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7445098 7445382 . + . gene_id "RvY_02658"; transcript_id "RvY_02658.1"; Scaffold001 rebuild transcript 7448009 7453079 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; gene_name "ACHE"; annotation "Acetylcholinesterase"; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family|(1)[AChE_tetra] Acetylcholinesterase tetramerisation domain"; EC "EC3.1.1.7"; KO "K01049"; similar_genes "ACES_CULPI(e-value:2.1e-87;bit-score:319.0)"; Scaffold001 rebuild exon 7448009 7448193 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7448376 7448590 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7448882 7449080 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7450364 7450658 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7450997 7451318 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7451505 7451964 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7452265 7452440 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild exon 7452928 7453079 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.1"; Scaffold001 rebuild transcript 7448009 7453602 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; gene_name "ACHE"; annotation "Acetylcholinesterase"; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family|(1)[AChE_tetra] Acetylcholinesterase tetramerisation domain"; EC "EC3.1.1.7"; KO "K01049"; similar_genes "ACES_CULPI(e-value:2.1e-87;bit-score:319.0)"; Scaffold001 rebuild exon 7448009 7448193 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7448376 7448590 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7448882 7449080 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7450364 7450658 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7450997 7451318 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7451505 7451964 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7452265 7452440 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild exon 7453487 7453602 . + . gene_id "RvY_02659"; transcript_id "RvY_02659.2"; Scaffold001 rebuild transcript 7453888 7456756 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold001 rebuild exon 7453888 7454198 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild exon 7454259 7454677 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild exon 7454740 7454942 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild exon 7455152 7455491 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild exon 7455566 7455819 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild exon 7456029 7456489 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild exon 7456567 7456756 . - . gene_id "RvY_02660"; transcript_id "RvY_02660.1"; Scaffold001 rebuild transcript 7458230 7463471 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; gene_name "ACHE"; annotation "Acetylcholinesterase"; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; EC "EC3.1.1.7"; KO "K01049"; similar_genes "ACES_ANOGA(e-value:2.1e-85;bit-score:313.0)"; Scaffold001 rebuild exon 7458230 7458465 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild exon 7458605 7458801 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild exon 7458870 7459329 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild exon 7460505 7460972 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild exon 7461255 7461391 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild exon 7461519 7461717 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild exon 7462886 7463471 . - . gene_id "RvY_02661"; transcript_id "RvY_02661.1"; Scaffold001 rebuild transcript 7467055 7469347 . + . gene_id "RvY_02662"; transcript_id "RvY_02662.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 7467055 7467362 . + . gene_id "RvY_02662"; transcript_id "RvY_02662.1"; Scaffold001 rebuild exon 7467695 7467829 . + . gene_id "RvY_02662"; transcript_id "RvY_02662.1"; Scaffold001 rebuild exon 7467948 7468200 . + . gene_id "RvY_02662"; transcript_id "RvY_02662.1"; Scaffold001 rebuild exon 7468814 7469347 . + . gene_id "RvY_02662"; transcript_id "RvY_02662.1"; Scaffold001 rebuild transcript 7469667 7471098 . - . gene_id "RvY_02663"; transcript_id "RvY_02663.1"; gene_name "FUT1"; annotation "galactoside 2-L-fucosyltransferase [EC:2.4.1.69]"; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; EC "EC2.4.1.69"; KO "K00718"; Scaffold001 rebuild exon 7469667 7470089 . - . gene_id "RvY_02663"; transcript_id "RvY_02663.1"; Scaffold001 rebuild exon 7470323 7470903 . - . gene_id "RvY_02663"; transcript_id "RvY_02663.1"; Scaffold001 rebuild exon 7470963 7471098 . - . gene_id "RvY_02663"; transcript_id "RvY_02663.1"; Scaffold001 rebuild transcript 7471717 7471941 . - . gene_id "RvY_02664"; transcript_id "RvY_02664.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7471717 7471941 . - . gene_id "RvY_02664"; transcript_id "RvY_02664.1"; Scaffold001 rebuild transcript 7471997 7472308 . - . gene_id "RvY_02665"; transcript_id "RvY_02665.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7471997 7472308 . - . gene_id "RvY_02665"; transcript_id "RvY_02665.1"; Scaffold001 rebuild transcript 7472753 7473767 . + . gene_id "RvY_02666"; transcript_id "RvY_02666.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7472753 7472870 . + . gene_id "RvY_02666"; transcript_id "RvY_02666.1"; Scaffold001 rebuild exon 7472942 7473536 . + . gene_id "RvY_02666"; transcript_id "RvY_02666.1"; Scaffold001 rebuild exon 7473650 7473767 . + . gene_id "RvY_02666"; transcript_id "RvY_02666.1"; Scaffold001 rebuild transcript 7473798 7474127 . + . gene_id "RvY_02667"; transcript_id "RvY_02667.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7473798 7474127 . + . gene_id "RvY_02667"; transcript_id "RvY_02667.1"; Scaffold001 rebuild transcript 7476385 7476880 . + . gene_id "RvY_02668"; transcript_id "RvY_02668.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7476385 7476436 . + . gene_id "RvY_02668"; transcript_id "RvY_02668.1"; Scaffold001 rebuild exon 7476537 7476880 . + . gene_id "RvY_02668"; transcript_id "RvY_02668.1"; Scaffold001 rebuild transcript 7478067 7479158 . - . gene_id "RvY_02669"; transcript_id "RvY_02669.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7478067 7478428 . - . gene_id "RvY_02669"; transcript_id "RvY_02669.1"; Scaffold001 rebuild exon 7478702 7479158 . - . gene_id "RvY_02669"; transcript_id "RvY_02669.1"; Scaffold001 rebuild transcript 7479351 7479885 . + . gene_id "RvY_02670"; transcript_id "RvY_02670.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7479351 7479360 . + . gene_id "RvY_02670"; transcript_id "RvY_02670.1"; Scaffold001 rebuild exon 7479692 7479885 . + . gene_id "RvY_02670"; transcript_id "RvY_02670.1"; Scaffold001 rebuild transcript 7483060 7484689 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; gene_name "YXKO-related"; annotation "hypothetical protein."; Pfam "[Carb_kinase] Carbohydrate kinase"; CDD "B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily."; similar_genes "CARKD_MOUSE(e-value:7.4e-20;bit-score:95.0)"; Scaffold001 rebuild exon 7483060 7483184 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7483258 7483303 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7483423 7483511 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7483612 7483720 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7483792 7483842 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7483915 7484019 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7484127 7484247 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7484321 7484444 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild exon 7484521 7484689 . + . gene_id "RvY_02671"; transcript_id "RvY_02671.1"; Scaffold001 rebuild transcript 7485500 7489212 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7485500 7485897 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7486223 7486665 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7486922 7487374 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7487606 7487837 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7487906 7488090 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7488250 7488365 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7488735 7488899 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild exon 7488988 7489212 . + . gene_id "RvY_02672"; transcript_id "RvY_02672.1"; Scaffold001 rebuild transcript 7490024 7491673 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7490024 7490120 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.1"; Scaffold001 rebuild exon 7490216 7490403 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.1"; Scaffold001 rebuild exon 7491386 7491673 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.1"; Scaffold001 rebuild transcript 7490024 7490553 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7490024 7490120 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.2"; Scaffold001 rebuild exon 7490216 7490553 . + . gene_id "RvY_02673"; transcript_id "RvY_02673.2"; Scaffold001 rebuild transcript 7493141 7494472 . + . gene_id "RvY_02674"; transcript_id "RvY_02674.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 7493141 7494142 . + . gene_id "RvY_02674"; transcript_id "RvY_02674.1"; Scaffold001 rebuild exon 7494353 7494472 . + . gene_id "RvY_02674"; transcript_id "RvY_02674.1"; Scaffold001 rebuild transcript 7493141 7494178 . + . gene_id "RvY_02674"; transcript_id "RvY_02674.2"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 7493141 7494178 . + . gene_id "RvY_02674"; transcript_id "RvY_02674.2"; Scaffold001 rebuild transcript 7495082 7496962 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; gene_name "HMGCL"; annotation "Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2"; Pfam "[HMGL-like]"; CDD "hydroxymethylglutaryl-CoA lyase; Provisional"; EC "EC4.1.3.4"; KO "K01640"; similar_genes "HMGC2_DANRE(e-value:2.9e-74;bit-score:276.0)"; Scaffold001 rebuild exon 7495082 7495132 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7495302 7495327 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7495410 7495638 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7495717 7495812 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7495879 7495937 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7496006 7496095 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7496172 7496424 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild exon 7496684 7496962 . + . gene_id "RvY_02675"; transcript_id "RvY_02675.1"; Scaffold001 rebuild transcript 7497416 7499047 . - . gene_id "RvY_02676"; transcript_id "RvY_02676.1"; annotation "hypothetical protein."; Pfam "[RDD] RDD family"; Scaffold001 rebuild exon 7497416 7497581 . - . gene_id "RvY_02676"; transcript_id "RvY_02676.1"; Scaffold001 rebuild exon 7497823 7497968 . - . gene_id "RvY_02676"; transcript_id "RvY_02676.1"; Scaffold001 rebuild exon 7498037 7498163 . - . gene_id "RvY_02676"; transcript_id "RvY_02676.1"; Scaffold001 rebuild exon 7498240 7498369 . - . gene_id "RvY_02676"; transcript_id "RvY_02676.1"; Scaffold001 rebuild exon 7498585 7499047 . - . gene_id "RvY_02676"; transcript_id "RvY_02676.1"; Scaffold001 rebuild transcript 7501190 7501813 . - . gene_id "RvY_02677"; transcript_id "RvY_02677.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7501190 7501813 . - . gene_id "RvY_02677"; transcript_id "RvY_02677.1"; Scaffold001 rebuild transcript 7502009 7503264 . - . gene_id "RvY_02678"; transcript_id "RvY_02678.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 7502009 7502521 . - . gene_id "RvY_02678"; transcript_id "RvY_02678.1"; Scaffold001 rebuild exon 7502539 7502979 . - . gene_id "RvY_02678"; transcript_id "RvY_02678.1"; Scaffold001 rebuild exon 7503008 7503071 . - . gene_id "RvY_02678"; transcript_id "RvY_02678.1"; Scaffold001 rebuild exon 7503131 7503264 . - . gene_id "RvY_02678"; transcript_id "RvY_02678.1"; Scaffold001 rebuild transcript 7503431 7503802 . - . gene_id "RvY_02679"; transcript_id "RvY_02679.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7503431 7503802 . - . gene_id "RvY_02679"; transcript_id "RvY_02679.1"; Scaffold001 rebuild transcript 7503950 7504569 . - . gene_id "RvY_02680"; transcript_id "RvY_02680.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7503950 7504120 . - . gene_id "RvY_02680"; transcript_id "RvY_02680.1"; Scaffold001 rebuild exon 7504516 7504569 . - . gene_id "RvY_02680"; transcript_id "RvY_02680.1"; Scaffold001 rebuild transcript 7506954 7510465 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7506954 7507553 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; Scaffold001 rebuild exon 7507752 7507862 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; Scaffold001 rebuild exon 7508945 7509098 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; Scaffold001 rebuild exon 7509359 7509651 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; Scaffold001 rebuild exon 7509698 7510206 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; Scaffold001 rebuild exon 7510348 7510465 . - . gene_id "RvY_02681"; transcript_id "RvY_02681.1"; Scaffold001 rebuild transcript 7511894 7512542 . - . gene_id "RvY_02682"; transcript_id "RvY_02682.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7511894 7512385 . - . gene_id "RvY_02682"; transcript_id "RvY_02682.1"; Scaffold001 rebuild exon 7512477 7512542 . - . gene_id "RvY_02682"; transcript_id "RvY_02682.1"; Scaffold001 rebuild transcript 7512645 7513137 . - . gene_id "RvY_02683"; transcript_id "RvY_02683.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 7512645 7512831 . - . gene_id "RvY_02683"; transcript_id "RvY_02683.1"; Scaffold001 rebuild exon 7512881 7513137 . - . gene_id "RvY_02683"; transcript_id "RvY_02683.1"; Scaffold001 rebuild transcript 7513232 7514836 . - . gene_id "RvY_02684"; transcript_id "RvY_02684.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold001 rebuild exon 7513232 7514836 . - . gene_id "RvY_02684"; transcript_id "RvY_02684.1"; Scaffold001 rebuild transcript 7514897 7515711 . + . gene_id "RvY_02685"; transcript_id "RvY_02685.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7514897 7514936 . + . gene_id "RvY_02685"; transcript_id "RvY_02685.1"; Scaffold001 rebuild exon 7515539 7515711 . + . gene_id "RvY_02685"; transcript_id "RvY_02685.1"; Scaffold001 rebuild transcript 7517780 7518495 . - . gene_id "RvY_02686"; transcript_id "RvY_02686.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7517780 7517864 . - . gene_id "RvY_02686"; transcript_id "RvY_02686.1"; Scaffold001 rebuild exon 7518413 7518495 . - . gene_id "RvY_02686"; transcript_id "RvY_02686.1"; Scaffold001 rebuild transcript 7518698 7521305 . + . gene_id "RvY_02687"; transcript_id "RvY_02687.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 7518698 7519403 . + . gene_id "RvY_02687"; transcript_id "RvY_02687.1"; Scaffold001 rebuild exon 7520917 7521305 . + . gene_id "RvY_02687"; transcript_id "RvY_02687.1"; Scaffold001 rebuild transcript 7521558 7523612 . - . gene_id "RvY_02688"; transcript_id "RvY_02688.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold001 rebuild exon 7521558 7522117 . - . gene_id "RvY_02688"; transcript_id "RvY_02688.1"; Scaffold001 rebuild exon 7522194 7522745 . - . gene_id "RvY_02688"; transcript_id "RvY_02688.1"; Scaffold001 rebuild exon 7522820 7522982 . - . gene_id "RvY_02688"; transcript_id "RvY_02688.1"; Scaffold001 rebuild exon 7523157 7523612 . - . gene_id "RvY_02688"; transcript_id "RvY_02688.1"; Scaffold001 rebuild transcript 7524031 7527592 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; gene_name "GH31_glucosidase_KIAA1161"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein."; EC "EC3.2.1.-"; similar_genes "K1161_MOUSE(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 7524031 7524479 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild exon 7524803 7525060 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild exon 7525127 7525329 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild exon 7525394 7525732 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild exon 7526001 7526311 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild exon 7526516 7527166 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild exon 7527473 7527592 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.1"; Scaffold001 rebuild transcript 7524031 7527483 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; gene_name "GH31_glucosidase_KIAA1161"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; CDD "KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein."; EC "EC3.2.1.-"; similar_genes "K1161_MOUSE(e-value:6.0e-11;bit-score:65.0)"; Scaffold001 rebuild exon 7524031 7524479 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild exon 7524803 7525060 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild exon 7525127 7525329 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild exon 7525394 7525732 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild exon 7526001 7526311 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild exon 7526516 7527166 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild exon 7527469 7527483 . - . gene_id "RvY_02689"; transcript_id "RvY_02689.2"; Scaffold001 rebuild transcript 7527645 7527992 . - . gene_id "RvY_02690"; transcript_id "RvY_02690.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7527645 7527992 . - . gene_id "RvY_02690"; transcript_id "RvY_02690.1"; Scaffold001 rebuild transcript 7528044 7529842 . + . gene_id "RvY_02691"; transcript_id "RvY_02691.1"; gene_name "PPAP2"; annotation "phosphatidate phosphatase [EC:3.1.3.4]"; Pfam "[PAP2_C] PAP2 superfamily C-terminal|[PAP2] PAP2 superfamily"; CDD "PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors."; EC "EC3.1.3.4"; KO "K01080"; similar_genes "LPP1_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold001 rebuild exon 7528044 7528173 . + . gene_id "RvY_02691"; transcript_id "RvY_02691.1"; Scaffold001 rebuild exon 7528242 7528334 . + . gene_id "RvY_02691"; transcript_id "RvY_02691.1"; Scaffold001 rebuild exon 7528626 7528681 . + . gene_id "RvY_02691"; transcript_id "RvY_02691.1"; Scaffold001 rebuild exon 7528769 7529338 . + . gene_id "RvY_02691"; transcript_id "RvY_02691.1"; Scaffold001 rebuild exon 7529681 7529842 . + . gene_id "RvY_02691"; transcript_id "RvY_02691.1"; Scaffold001 rebuild transcript 7530596 7531045 . - . gene_id "RvY_02692"; transcript_id "RvY_02692.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7530596 7530709 . - . gene_id "RvY_02692"; transcript_id "RvY_02692.1"; Scaffold001 rebuild exon 7530830 7531045 . - . gene_id "RvY_02692"; transcript_id "RvY_02692.1"; Scaffold001 rebuild transcript 7531423 7531988 . - . gene_id "RvY_02693"; transcript_id "RvY_02693.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7531423 7531607 . - . gene_id "RvY_02693"; transcript_id "RvY_02693.1"; Scaffold001 rebuild exon 7531805 7531988 . - . gene_id "RvY_02693"; transcript_id "RvY_02693.1"; Scaffold001 rebuild transcript 7532159 7532632 . - . gene_id "RvY_02694"; transcript_id "RvY_02694.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7532159 7532632 . - . gene_id "RvY_02694"; transcript_id "RvY_02694.1"; Scaffold001 rebuild transcript 7533295 7535304 . + . gene_id "RvY_02695"; transcript_id "RvY_02695.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 7533295 7533507 . + . gene_id "RvY_02695"; transcript_id "RvY_02695.1"; Scaffold001 rebuild exon 7535017 7535304 . + . gene_id "RvY_02695"; transcript_id "RvY_02695.1"; Scaffold001 rebuild transcript 7536062 7536238 . - . gene_id "RvY_02696"; transcript_id "RvY_02696.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7536062 7536127 . - . gene_id "RvY_02696"; transcript_id "RvY_02696.1"; Scaffold001 rebuild exon 7536185 7536238 . - . gene_id "RvY_02696"; transcript_id "RvY_02696.1"; Scaffold001 rebuild transcript 7536833 7537009 . - . gene_id "RvY_02697"; transcript_id "RvY_02697.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7536833 7537009 . - . gene_id "RvY_02697"; transcript_id "RvY_02697.1"; Scaffold001 rebuild transcript 7537104 7537409 . - . gene_id "RvY_02698"; transcript_id "RvY_02698.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7537104 7537409 . - . gene_id "RvY_02698"; transcript_id "RvY_02698.1"; Scaffold001 rebuild transcript 7537693 7542116 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; gene_name "(1)SLC2A13"; annotation "(1)MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 13(2)hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(1)[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter|(1)[TRI12] Fungal trichothecene efflux pump (TRI12)"; KO "(1)K08150"; similar_genes "MYCT_MOUSE(e-value:8.0e-13;bit-score:72.0)"; Scaffold001 rebuild exon 7537693 7537925 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7538010 7538162 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7538232 7538488 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7538710 7538833 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7538906 7539069 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7539231 7539342 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7539464 7539675 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7539740 7539899 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild exon 7541726 7542116 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.1"; Scaffold001 rebuild transcript 7537693 7541804 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; gene_name "(1)SLC2A13"; annotation "(1)MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 13(2)hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(1)[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter|(1)[TRI12] Fungal trichothecene efflux pump (TRI12)"; KO "(1)K08150"; similar_genes "MYCT_MOUSE(e-value:8.0e-13;bit-score:72.0)"; Scaffold001 rebuild exon 7537693 7538162 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7538232 7538488 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7538710 7538833 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7538906 7539069 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7539231 7539342 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7539464 7539675 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7539740 7539899 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild exon 7541726 7541804 . - . gene_id "RvY_02699"; transcript_id "RvY_02699.2"; Scaffold001 rebuild transcript 7543040 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; gene_name "(1,2,3)nfi(4)Endonuclease_V"; annotation "(1,2,3)deoxyribonuclease V [EC:3.1.21.7](4)hypothetical protein."; Pfam "[Endonuclease_5] Endonuclease V"; CDD "Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown."; EC "(1,2,3)EC3.1.-.-|EC3.1.21.7(4)EC3.1.-.-"; KO "(1,2,3)K05982"; similar_genes "YQ020_HUMAN(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 7543040 7543186 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7543351 7543479 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7543615 7543683 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7543748 7543860 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7543929 7543968 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7544044 7544181 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7544249 7544465 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild exon 7544555 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.1"; Scaffold001 rebuild transcript 7543040 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; gene_name "(1,2,3)nfi(4)Endonuclease_V"; annotation "(1,2,3)deoxyribonuclease V [EC:3.1.21.7](4)hypothetical protein."; Pfam "[Endonuclease_5] Endonuclease V"; CDD "Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown."; EC "(1,2,3)EC3.1.-.-|EC3.1.21.7(4)EC3.1.-.-"; KO "(1,2,3)K05982"; similar_genes "YQ020_HUMAN(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 7543040 7543186 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild exon 7543351 7543479 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild exon 7543748 7543860 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild exon 7543929 7543968 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild exon 7544044 7544181 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild exon 7544249 7544465 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild exon 7544555 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.2"; Scaffold001 rebuild transcript 7543162 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; gene_name "(1,2,3)nfi(4)Endonuclease_V"; annotation "(1,2,3)deoxyribonuclease V [EC:3.1.21.7](4)hypothetical protein."; Pfam "[Endonuclease_5] Endonuclease V"; CDD "Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown."; EC "(1,2,3)EC3.1.-.-|EC3.1.21.7(4)EC3.1.-.-"; KO "(1,2,3)K05982"; similar_genes "YQ020_HUMAN(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 7543162 7543186 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7543355 7543479 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7543615 7543683 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7543748 7543860 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7543929 7543968 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7544044 7544181 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7544249 7544465 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild exon 7544555 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.3"; Scaffold001 rebuild transcript 7543736 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.4"; gene_name "(1,2,3)nfi(4)Endonuclease_V"; annotation "(1,2,3)deoxyribonuclease V [EC:3.1.21.7](4)hypothetical protein."; Pfam "[Endonuclease_5] Endonuclease V"; CDD "Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown."; EC "(1,2,3)EC3.1.-.-|EC3.1.21.7(4)EC3.1.-.-"; KO "(1,2,3)K05982"; similar_genes "YQ020_HUMAN(e-value:1.7e-08;bit-score:57.0)"; Scaffold001 rebuild exon 7543736 7543860 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.4"; Scaffold001 rebuild exon 7543929 7543968 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.4"; Scaffold001 rebuild exon 7544044 7544181 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.4"; Scaffold001 rebuild exon 7544249 7544465 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.4"; Scaffold001 rebuild exon 7544555 7544637 . - . gene_id "RvY_02700"; transcript_id "RvY_02700.4"; Scaffold001 rebuild transcript 7545143 7546920 . + . gene_id "RvY_02701"; transcript_id "RvY_02701.1"; gene_name "FBXO31"; annotation "F-box protein 31"; Pfam "[DUF3506]"; KO "K10308"; Scaffold001 rebuild exon 7545143 7545476 . + . gene_id "RvY_02701"; transcript_id "RvY_02701.1"; Scaffold001 rebuild exon 7545649 7546045 . + . gene_id "RvY_02701"; transcript_id "RvY_02701.1"; Scaffold001 rebuild exon 7546106 7546394 . + . gene_id "RvY_02701"; transcript_id "RvY_02701.1"; Scaffold001 rebuild exon 7546462 7546920 . + . gene_id "RvY_02701"; transcript_id "RvY_02701.1"; Scaffold001 rebuild transcript 7547341 7552082 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; gene_name "TBC"; annotation "TBC domain-containing protein kinase-like protein"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain|[Pkinase] Protein kinase domain|[Rhodanese] Rhodanese-like domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBCK_MOUSE(e-value:1.4e-105;bit-score:380.0)"; Scaffold001 rebuild exon 7547341 7547550 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7547626 7547710 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7547802 7547877 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7547947 7548147 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7548251 7548380 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7548442 7548555 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7548623 7548742 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7548943 7549027 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7549090 7549228 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7549308 7549407 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7549484 7549529 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7549594 7549817 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7549909 7549971 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7550132 7550309 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7550379 7550462 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7550558 7550643 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7550712 7550748 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7550828 7550989 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7551096 7551247 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7551391 7551551 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7551609 7551768 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild exon 7551975 7552082 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.1"; Scaffold001 rebuild transcript 7547431 7552082 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; gene_name "TBC"; annotation "TBC domain-containing protein kinase-like protein"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain|[Pkinase] Protein kinase domain|[Rhodanese] Rhodanese-like domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBCK_MOUSE(e-value:1.4e-105;bit-score:380.0)"; Scaffold001 rebuild exon 7547431 7547550 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7547626 7547710 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7547802 7547877 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7547947 7548147 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7548251 7548380 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7548442 7548555 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7548623 7548742 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7548940 7549027 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7549090 7549228 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7549308 7549407 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7549484 7549529 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7549594 7549817 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7549909 7549971 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7550132 7550309 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7550379 7550462 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7550558 7550643 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7550712 7550748 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7550828 7550989 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7551096 7551247 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7551391 7551551 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7551609 7551768 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild exon 7551975 7552082 . + . gene_id "RvY_02702"; transcript_id "RvY_02702.2"; Scaffold001 rebuild transcript 7552248 7555698 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold001 rebuild exon 7552248 7552428 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7552534 7552910 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7553118 7553228 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7553296 7553688 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7553777 7554170 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7554595 7554853 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7555207 7555509 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild exon 7555590 7555698 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.1"; Scaffold001 rebuild transcript 7552248 7554193 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.2"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold001 rebuild exon 7552248 7552428 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.2"; Scaffold001 rebuild exon 7552534 7552910 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.2"; Scaffold001 rebuild exon 7553118 7553228 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.2"; Scaffold001 rebuild exon 7553296 7553688 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.2"; Scaffold001 rebuild exon 7553777 7554193 . - . gene_id "RvY_02703"; transcript_id "RvY_02703.2"; Scaffold001 rebuild transcript 7555870 7556578 . - . gene_id "RvY_02704"; transcript_id "RvY_02704.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7555870 7556297 . - . gene_id "RvY_02704"; transcript_id "RvY_02704.1"; Scaffold001 rebuild exon 7556392 7556578 . - . gene_id "RvY_02704"; transcript_id "RvY_02704.1"; Scaffold001 rebuild transcript 7557379 7557751 . + . gene_id "RvY_02705"; transcript_id "RvY_02705.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7557379 7557399 . + . gene_id "RvY_02705"; transcript_id "RvY_02705.1"; Scaffold001 rebuild exon 7557482 7557751 . + . gene_id "RvY_02705"; transcript_id "RvY_02705.1"; Scaffold001 rebuild transcript 7560523 7564198 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; gene_name "(1,2)S_TKc(3)K08884"; annotation "putative Serine/threonine-protein kinase NIM1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "(3)K08884"; similar_genes "NIM1_MOUSE(e-value:6.7e-42;bit-score:168.0)"; Scaffold001 rebuild exon 7560523 7560911 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; Scaffold001 rebuild exon 7561173 7561438 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; Scaffold001 rebuild exon 7562056 7562324 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; Scaffold001 rebuild exon 7562646 7562940 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; Scaffold001 rebuild exon 7563415 7563597 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; Scaffold001 rebuild exon 7563819 7564198 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.1"; Scaffold001 rebuild transcript 7560523 7564198 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; gene_name "(1,2)S_TKc(3)K08884"; annotation "putative Serine/threonine-protein kinase NIM1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "(3)K08884"; similar_genes "NIM1_MOUSE(e-value:6.7e-42;bit-score:168.0)"; Scaffold001 rebuild exon 7560523 7560911 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; Scaffold001 rebuild exon 7561173 7561438 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; Scaffold001 rebuild exon 7562056 7562324 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; Scaffold001 rebuild exon 7562646 7562940 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; Scaffold001 rebuild exon 7563415 7563597 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; Scaffold001 rebuild exon 7563822 7564198 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.2"; Scaffold001 rebuild transcript 7560523 7563050 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.3"; gene_name "(1,2)S_TKc(3)K08884"; annotation "putative Serine/threonine-protein kinase NIM1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "(3)K08884"; similar_genes "NIM1_MOUSE(e-value:6.7e-42;bit-score:168.0)"; Scaffold001 rebuild exon 7560523 7560911 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.3"; Scaffold001 rebuild exon 7561173 7561438 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.3"; Scaffold001 rebuild exon 7562056 7562324 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.3"; Scaffold001 rebuild exon 7562646 7563050 . + . gene_id "RvY_02706"; transcript_id "RvY_02706.3"; Scaffold001 rebuild transcript 7565591 7568897 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 7565591 7565986 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7566230 7566364 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7566443 7566550 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7566795 7567035 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7567127 7567264 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7567402 7567451 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7567523 7567641 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7567703 7567764 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7567829 7567887 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7568120 7568263 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7568335 7568550 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild exon 7568718 7568897 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.1"; Scaffold001 rebuild transcript 7565591 7568897 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 7565591 7565986 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7566230 7566364 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7566443 7566550 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7566795 7567035 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7567127 7567264 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7567402 7567451 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7567523 7567641 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7567703 7567764 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7567829 7567887 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7568120 7568263 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7568335 7568550 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild exon 7568847 7568897 . - . gene_id "RvY_02707"; transcript_id "RvY_02707.2"; Scaffold001 rebuild transcript 7569864 7573095 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; Scaffold001 rebuild exon 7569864 7570223 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7570554 7570688 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7570758 7570865 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7570927 7571170 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7571461 7571601 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7571679 7571728 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7571822 7571940 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7572031 7572068 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7572141 7572196 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7572294 7572416 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7572494 7572700 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7572831 7572929 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild exon 7573045 7573095 . - . gene_id "RvY_02708"; transcript_id "RvY_02708.1"; Scaffold001 rebuild transcript 7573962 7576115 . - . gene_id "RvY_02709"; transcript_id "RvY_02709.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 7573962 7574260 . - . gene_id "RvY_02709"; transcript_id "RvY_02709.1"; Scaffold001 rebuild exon 7574292 7574613 . - . gene_id "RvY_02709"; transcript_id "RvY_02709.1"; Scaffold001 rebuild exon 7574971 7575180 . - . gene_id "RvY_02709"; transcript_id "RvY_02709.1"; Scaffold001 rebuild exon 7575247 7575674 . - . gene_id "RvY_02709"; transcript_id "RvY_02709.1"; Scaffold001 rebuild exon 7575812 7576115 . - . gene_id "RvY_02709"; transcript_id "RvY_02709.1"; Scaffold001 rebuild transcript 7579293 7581287 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7579293 7579299 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7579477 7579532 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7579708 7579755 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7579951 7579989 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7580182 7580227 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7580447 7580517 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7580728 7580780 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7580973 7581017 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild exon 7581215 7581287 . + . gene_id "RvY_02710"; transcript_id "RvY_02710.1"; Scaffold001 rebuild transcript 7582741 7584784 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7582741 7583593 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild exon 7583814 7583865 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild exon 7583953 7584149 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild exon 7584229 7584318 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild exon 7584387 7584513 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild exon 7584597 7584653 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild exon 7584754 7584784 . - . gene_id "RvY_02711"; transcript_id "RvY_02711.1"; Scaffold001 rebuild transcript 7585848 7587226 . - . gene_id "RvY_02712"; transcript_id "RvY_02712.1"; gene_name "ESCO"; annotation "N-acetyltransferase [EC:2.3.1.-]"; Pfam "[zf-C2H2_3] zinc-finger of acetyl-transferase ESCO|[Acetyltransf_13] ESCO1/2 acetyl-transferase"; EC "EC2.3.1.-"; KO "K11268"; Scaffold001 rebuild exon 7585848 7586025 . - . gene_id "RvY_02712"; transcript_id "RvY_02712.1"; Scaffold001 rebuild exon 7586097 7586386 . - . gene_id "RvY_02712"; transcript_id "RvY_02712.1"; Scaffold001 rebuild exon 7586456 7586539 . - . gene_id "RvY_02712"; transcript_id "RvY_02712.1"; Scaffold001 rebuild exon 7586743 7586889 . - . gene_id "RvY_02712"; transcript_id "RvY_02712.1"; Scaffold001 rebuild exon 7587020 7587226 . - . gene_id "RvY_02712"; transcript_id "RvY_02712.1"; Scaffold001 rebuild transcript 7590951 7591396 . - . gene_id "RvY_02713"; transcript_id "RvY_02713.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7590951 7591112 . - . gene_id "RvY_02713"; transcript_id "RvY_02713.1"; Scaffold001 rebuild exon 7591199 7591396 . - . gene_id "RvY_02713"; transcript_id "RvY_02713.1"; Scaffold001 rebuild transcript 7593042 7600804 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; gene_name "K01196"; annotation "Glycogen debranching enzyme"; Pfam "[GDE_C] Amylo-alpha-1,6-glucosidase"; CDD "glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4-->1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground."; EC "EC2.4.1.25|EC3.2.1.33"; KO "K01196"; similar_genes "GDE_HUMAN(e-value:6.0e-81;bit-score:298.0)"; Scaffold001 rebuild exon 7593042 7593147 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7593237 7593456 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7593808 7594086 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7594146 7594416 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7594609 7594726 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7594785 7594899 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7594986 7595204 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7595491 7595818 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7595879 7596002 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7596171 7596334 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7596415 7596516 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7596580 7596738 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7596951 7597342 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7597542 7597762 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7597825 7597958 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7598154 7598287 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7598358 7598642 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7598704 7598929 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7599191 7599551 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7599817 7600028 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7600096 7600193 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7600257 7600344 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild exon 7600532 7600804 . + . gene_id "RvY_02714"; transcript_id "RvY_02714.1"; Scaffold001 rebuild transcript 7602501 7602686 . - . gene_id "RvY_02715"; transcript_id "RvY_02715.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7602501 7602686 . - . gene_id "RvY_02715"; transcript_id "RvY_02715.1"; Scaffold001 rebuild transcript 7602749 7603129 . - . gene_id "RvY_02716"; transcript_id "RvY_02716.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7602749 7602937 . - . gene_id "RvY_02716"; transcript_id "RvY_02716.1"; Scaffold001 rebuild exon 7603055 7603129 . - . gene_id "RvY_02716"; transcript_id "RvY_02716.1"; Scaffold001 rebuild transcript 7603501 7604687 . - . gene_id "RvY_02717"; transcript_id "RvY_02717.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7603501 7603824 . - . gene_id "RvY_02717"; transcript_id "RvY_02717.1"; Scaffold001 rebuild exon 7604049 7604144 . - . gene_id "RvY_02717"; transcript_id "RvY_02717.1"; Scaffold001 rebuild exon 7604313 7604584 . - . gene_id "RvY_02717"; transcript_id "RvY_02717.1"; Scaffold001 rebuild exon 7604645 7604687 . - . gene_id "RvY_02717"; transcript_id "RvY_02717.1"; Scaffold001 rebuild transcript 7605056 7606065 . - . gene_id "RvY_02718"; transcript_id "RvY_02718.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7605056 7605215 . - . gene_id "RvY_02718"; transcript_id "RvY_02718.1"; Scaffold001 rebuild exon 7606046 7606065 . - . gene_id "RvY_02718"; transcript_id "RvY_02718.1"; Scaffold001 rebuild transcript 7606443 7607042 . + . gene_id "RvY_02719"; transcript_id "RvY_02719.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7606443 7606487 . + . gene_id "RvY_02719"; transcript_id "RvY_02719.1"; Scaffold001 rebuild exon 7606914 7607042 . + . gene_id "RvY_02719"; transcript_id "RvY_02719.1"; Scaffold001 rebuild transcript 7607598 7608008 . + . gene_id "RvY_02720"; transcript_id "RvY_02720.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7607598 7608008 . + . gene_id "RvY_02720"; transcript_id "RvY_02720.1"; Scaffold001 rebuild transcript 7608275 7608592 . + . gene_id "RvY_02721"; transcript_id "RvY_02721.1"; gene_name "NagA"; annotation "hypothetical protein."; CDD "N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling."; Scaffold001 rebuild exon 7608275 7608592 . + . gene_id "RvY_02721"; transcript_id "RvY_02721.1"; Scaffold001 rebuild transcript 7609823 7619746 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; gene_name "ARM"; annotation "putative Plakophilin-4"; Pfam "[Arm] Armadillo/beta-catenin-like repeat|[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat"; CDD "Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model."; similar_genes "PKP4_MOUSE(e-value:1.2e-30;bit-score:131.0)"; Scaffold001 rebuild exon 7609823 7609936 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7610129 7610256 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7610367 7610432 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7611198 7611224 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7612215 7612389 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7613050 7613419 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7615967 7616316 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7616600 7616862 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7617093 7617322 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7617406 7617436 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7617510 7617622 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7617822 7617874 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7617962 7618112 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7618205 7618349 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7618826 7618919 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7619080 7619292 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild exon 7619552 7619746 . + . gene_id "RvY_02722"; transcript_id "RvY_02722.1"; Scaffold001 rebuild transcript 7620839 7621667 . + . gene_id "RvY_02723"; transcript_id "RvY_02723.1"; annotation "hypothetical protein."; Pfam "[DUF947]"; KO "K14795"; Scaffold001 rebuild exon 7620839 7621144 . + . gene_id "RvY_02723"; transcript_id "RvY_02723.1"; Scaffold001 rebuild exon 7621338 7621455 . + . gene_id "RvY_02723"; transcript_id "RvY_02723.1"; Scaffold001 rebuild exon 7621540 7621667 . + . gene_id "RvY_02723"; transcript_id "RvY_02723.1"; Scaffold001 rebuild transcript 7621940 7622811 . - . gene_id "RvY_02724"; transcript_id "RvY_02724.1"; gene_name "Ribosomal_L11"; annotation "putative Probable 39S ribosomal protein L11, mitochondrial"; Pfam "[Ribosomal_L11_N] Ribosomal protein L11, N-terminal domain|[Ribosomal_L11] Ribosomal protein L11, RNA binding domain"; CDD "Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the ""stringent response"" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation."; similar_genes "RM11_CAEEL(e-value:1.2e-28;bit-score:124.0)"; Scaffold001 rebuild exon 7621940 7622214 . - . gene_id "RvY_02724"; transcript_id "RvY_02724.1"; Scaffold001 rebuild exon 7622298 7622391 . - . gene_id "RvY_02724"; transcript_id "RvY_02724.1"; Scaffold001 rebuild exon 7622489 7622584 . - . gene_id "RvY_02724"; transcript_id "RvY_02724.1"; Scaffold001 rebuild exon 7622680 7622811 . - . gene_id "RvY_02724"; transcript_id "RvY_02724.1"; Scaffold001 rebuild transcript 7623132 7623347 . - . gene_id "RvY_02725"; transcript_id "RvY_02725.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7623132 7623347 . - . gene_id "RvY_02725"; transcript_id "RvY_02725.1"; Scaffold001 rebuild transcript 7623415 7626120 . + . gene_id "RvY_02726"; transcript_id "RvY_02726.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7623415 7624071 . + . gene_id "RvY_02726"; transcript_id "RvY_02726.1"; Scaffold001 rebuild exon 7624403 7624961 . + . gene_id "RvY_02726"; transcript_id "RvY_02726.1"; Scaffold001 rebuild exon 7625729 7626120 . + . gene_id "RvY_02726"; transcript_id "RvY_02726.1"; Scaffold001 rebuild transcript 7626559 7628171 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; gene_name "nagB"; annotation "Glucosamine-6-phosphate isomerase"; Pfam "[Glucosamine_iso] Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase"; CDD "glucosamine-6-phosphate isomerase; Provisional"; EC "EC3.5.99.6"; KO "K02564"; similar_genes "GNPI_AEDAE(e-value:2.8e-121;bit-score:432.0)"; Scaffold001 rebuild exon 7626559 7626644 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7626723 7626909 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7627015 7627037 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7627121 7627258 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7627521 7627628 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7627706 7627804 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7627884 7627985 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild exon 7628048 7628171 . - . gene_id "RvY_02727"; transcript_id "RvY_02727.1"; Scaffold001 rebuild transcript 7629016 7629787 . - . gene_id "RvY_02728"; transcript_id "RvY_02728.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7629016 7629303 . - . gene_id "RvY_02728"; transcript_id "RvY_02728.1"; Scaffold001 rebuild exon 7629662 7629787 . - . gene_id "RvY_02728"; transcript_id "RvY_02728.1"; Scaffold001 rebuild transcript 7630382 7630591 . + . gene_id "RvY_02729"; transcript_id "RvY_02729.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7630382 7630591 . + . gene_id "RvY_02729"; transcript_id "RvY_02729.1"; Scaffold001 rebuild transcript 7631116 7631756 . - . gene_id "RvY_02730"; transcript_id "RvY_02730.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7631116 7631265 . - . gene_id "RvY_02730"; transcript_id "RvY_02730.1"; Scaffold001 rebuild exon 7631457 7631756 . - . gene_id "RvY_02730"; transcript_id "RvY_02730.1"; Scaffold001 rebuild transcript 7635523 7637561 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.1"; gene_name "ST14"; annotation "suppressor of tumorigenicity protein 14 [EC:3.4.21.109]"; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 7635523 7635640 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.1"; Scaffold001 rebuild exon 7635716 7635893 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.1"; Scaffold001 rebuild exon 7636225 7636490 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.1"; Scaffold001 rebuild exon 7637013 7637167 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.1"; Scaffold001 rebuild exon 7637325 7637561 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.1"; Scaffold001 rebuild transcript 7635523 7637561 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.2"; gene_name "ST14"; annotation "suppressor of tumorigenicity protein 14 [EC:3.4.21.109]"; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 7635523 7635640 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.2"; Scaffold001 rebuild exon 7635755 7635893 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.2"; Scaffold001 rebuild exon 7636225 7636490 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.2"; Scaffold001 rebuild exon 7637013 7637167 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.2"; Scaffold001 rebuild exon 7637325 7637561 . + . gene_id "RvY_02731"; transcript_id "RvY_02731.2"; Scaffold001 rebuild transcript 7637822 7642355 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; gene_name "SF3B2"; annotation "Splicing factor 3B subunit 2"; Pfam "[PSP]|[DUF382]"; CDD "Splicing factor 3b, subunit 2 [RNA processing and modification]"; KO "K12829"; similar_genes "SF3B2_HUMAN(e-value:4.2e-122;bit-score:435.0)"; Scaffold001 rebuild exon 7637822 7637899 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7638177 7638359 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7638852 7638951 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7639167 7639271 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7639328 7639482 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7639563 7639775 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7640122 7640211 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7640301 7640603 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7640928 7641185 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7641303 7641381 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7641492 7641622 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7641727 7641839 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild exon 7641908 7642355 . - . gene_id "RvY_02732"; transcript_id "RvY_02732.1"; Scaffold001 rebuild transcript 7643736 7644491 . + . gene_id "RvY_02733"; transcript_id "RvY_02733.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7643736 7644491 . + . gene_id "RvY_02733"; transcript_id "RvY_02733.1"; Scaffold001 rebuild transcript 7644650 7646210 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7644650 7645166 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.1"; Scaffold001 rebuild exon 7645434 7645616 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.1"; Scaffold001 rebuild exon 7645709 7645948 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.1"; Scaffold001 rebuild exon 7646137 7646210 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.1"; Scaffold001 rebuild transcript 7644650 7645959 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7644650 7645166 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.2"; Scaffold001 rebuild exon 7645434 7645616 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.2"; Scaffold001 rebuild exon 7645709 7645959 . + . gene_id "RvY_02734"; transcript_id "RvY_02734.2"; Scaffold001 rebuild transcript 7647250 7647826 . + . gene_id "RvY_02735"; transcript_id "RvY_02735.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7647250 7647502 . + . gene_id "RvY_02735"; transcript_id "RvY_02735.1"; Scaffold001 rebuild exon 7647618 7647826 . + . gene_id "RvY_02735"; transcript_id "RvY_02735.1"; Scaffold001 rebuild transcript 7647670 7649312 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7647670 7648189 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.1"; Scaffold001 rebuild exon 7648628 7648940 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.1"; Scaffold001 rebuild exon 7649183 7649312 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.1"; Scaffold001 rebuild transcript 7647746 7649312 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7647746 7647787 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.2"; Scaffold001 rebuild exon 7647973 7648189 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.2"; Scaffold001 rebuild exon 7648628 7648940 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.2"; Scaffold001 rebuild exon 7649183 7649312 . - . gene_id "RvY_02736"; transcript_id "RvY_02736.2"; Scaffold001 rebuild transcript 7649315 7650331 . - . gene_id "RvY_02737"; transcript_id "RvY_02737.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7649315 7649421 . - . gene_id "RvY_02737"; transcript_id "RvY_02737.1"; Scaffold001 rebuild exon 7649492 7649677 . - . gene_id "RvY_02737"; transcript_id "RvY_02737.1"; Scaffold001 rebuild exon 7649983 7650331 . - . gene_id "RvY_02737"; transcript_id "RvY_02737.1"; Scaffold001 rebuild transcript 7650352 7650714 . - . gene_id "RvY_02738"; transcript_id "RvY_02738.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7650352 7650714 . - . gene_id "RvY_02738"; transcript_id "RvY_02738.1"; Scaffold001 rebuild transcript 7650916 7651434 . - . gene_id "RvY_02739"; transcript_id "RvY_02739.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7650916 7651434 . - . gene_id "RvY_02739"; transcript_id "RvY_02739.1"; Scaffold001 rebuild transcript 7651676 7651883 . + . gene_id "RvY_02740"; transcript_id "RvY_02740.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7651676 7651687 . + . gene_id "RvY_02740"; transcript_id "RvY_02740.1"; Scaffold001 rebuild exon 7651749 7651883 . + . gene_id "RvY_02740"; transcript_id "RvY_02740.1"; Scaffold001 rebuild transcript 7652513 7656601 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7652513 7653126 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; Scaffold001 rebuild exon 7653221 7653441 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; Scaffold001 rebuild exon 7653788 7654088 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; Scaffold001 rebuild exon 7654346 7654585 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; Scaffold001 rebuild exon 7654650 7654835 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; Scaffold001 rebuild exon 7655080 7656601 . - . gene_id "RvY_02741"; transcript_id "RvY_02741.1"; Scaffold001 rebuild transcript 7657241 7660686 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7657241 7657878 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; Scaffold001 rebuild exon 7657953 7658167 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; Scaffold001 rebuild exon 7658446 7658743 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; Scaffold001 rebuild exon 7658809 7659048 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; Scaffold001 rebuild exon 7659112 7659309 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; Scaffold001 rebuild exon 7659588 7660686 . - . gene_id "RvY_02742"; transcript_id "RvY_02742.1"; Scaffold001 rebuild transcript 7661898 7662609 . - . gene_id "RvY_02743"; transcript_id "RvY_02743.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7661898 7662511 . - . gene_id "RvY_02743"; transcript_id "RvY_02743.1"; Scaffold001 rebuild exon 7662594 7662609 . - . gene_id "RvY_02743"; transcript_id "RvY_02743.1"; Scaffold001 rebuild transcript 7662529 7662717 . + . gene_id "RvY_02744"; transcript_id "RvY_02744.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7662529 7662717 . + . gene_id "RvY_02744"; transcript_id "RvY_02744.1"; Scaffold001 rebuild transcript 7663475 7664486 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7663475 7663677 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.1"; Scaffold001 rebuild exon 7663760 7663942 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.1"; Scaffold001 rebuild exon 7664234 7664486 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.1"; Scaffold001 rebuild transcript 7663080 7663568 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7663080 7663372 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.2"; Scaffold001 rebuild exon 7663439 7663568 . - . gene_id "RvY_02745"; transcript_id "RvY_02745.2"; Scaffold001 rebuild transcript 7663209 7663388 . + . gene_id "RvY_02746"; transcript_id "RvY_02746.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7663209 7663388 . + . gene_id "RvY_02746"; transcript_id "RvY_02746.1"; Scaffold001 rebuild transcript 7664896 7665291 . - . gene_id "RvY_02747"; transcript_id "RvY_02747.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7664896 7665291 . - . gene_id "RvY_02747"; transcript_id "RvY_02747.1"; Scaffold001 rebuild transcript 7665029 7665421 . - . gene_id "RvY_02747"; transcript_id "RvY_02747.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7665029 7665421 . - . gene_id "RvY_02747"; transcript_id "RvY_02747.2"; Scaffold001 rebuild transcript 7665794 7669318 . + . gene_id "RvY_02748"; transcript_id "RvY_02748.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7665794 7667051 . + . gene_id "RvY_02748"; transcript_id "RvY_02748.1"; Scaffold001 rebuild exon 7667272 7667718 . + . gene_id "RvY_02748"; transcript_id "RvY_02748.1"; Scaffold001 rebuild exon 7667874 7668162 . + . gene_id "RvY_02748"; transcript_id "RvY_02748.1"; Scaffold001 rebuild exon 7668221 7668435 . + . gene_id "RvY_02748"; transcript_id "RvY_02748.1"; Scaffold001 rebuild exon 7668705 7669318 . + . gene_id "RvY_02748"; transcript_id "RvY_02748.1"; Scaffold001 rebuild transcript 7669746 7671047 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; gene_name "YEATS4"; annotation "putative YEATS domain-containing protein 4"; Pfam "[YEATS] YEATS family"; KO "K11341"; similar_genes "YETS4_HUMAN(e-value:3.4e-26;bit-score:116.0)"; Scaffold001 rebuild exon 7669746 7669984 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild exon 7670040 7670124 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild exon 7670188 7670289 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild exon 7670369 7670463 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild exon 7670542 7670608 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild exon 7670683 7670853 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild exon 7670982 7671047 . - . gene_id "RvY_02749"; transcript_id "RvY_02749.1"; Scaffold001 rebuild transcript 7672714 7674779 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; gene_name "WD40"; annotation "putative Glutamate-rich WD repeat-containing protein 1"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A|[CAF1C_H4-bd] Histone-binding protein RBBP4 or subunit C of CAF1 complex"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14848"; similar_genes "GRWD1_MOUSE(e-value:8.0e-30;bit-score:128.0)"; Scaffold001 rebuild exon 7672714 7672987 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; Scaffold001 rebuild exon 7673049 7673323 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; Scaffold001 rebuild exon 7673488 7673713 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; Scaffold001 rebuild exon 7673822 7673949 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; Scaffold001 rebuild exon 7674012 7674203 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; Scaffold001 rebuild exon 7674474 7674779 . + . gene_id "RvY_02750"; transcript_id "RvY_02750.1"; Scaffold001 rebuild transcript 7674999 7676537 . - . gene_id "RvY_02751"; transcript_id "RvY_02751.1"; annotation "hypothetical protein."; Pfam "[DUF4098]"; Scaffold001 rebuild exon 7674999 7675372 . - . gene_id "RvY_02751"; transcript_id "RvY_02751.1"; Scaffold001 rebuild exon 7675597 7676064 . - . gene_id "RvY_02751"; transcript_id "RvY_02751.1"; Scaffold001 rebuild exon 7676291 7676537 . - . gene_id "RvY_02751"; transcript_id "RvY_02751.1"; Scaffold001 rebuild transcript 7678524 7678991 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7678524 7678991 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.1"; Scaffold001 rebuild transcript 7677928 7678801 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7677928 7677955 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.2"; Scaffold001 rebuild exon 7678310 7678451 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.2"; Scaffold001 rebuild exon 7678519 7678801 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.2"; Scaffold001 rebuild transcript 7678306 7678801 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7678306 7678451 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.3"; Scaffold001 rebuild exon 7678519 7678801 . - . gene_id "RvY_02752"; transcript_id "RvY_02752.3"; Scaffold001 rebuild transcript 7679276 7687600 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; gene_name "K01552"; annotation "Sodium/potassium-transporting ATPase subunit alpha-1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "K01552"; similar_genes "AT1A1_XENLA(e-value:2.9e-125;bit-score:445.0)"; Scaffold001 rebuild exon 7679276 7679396 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7679495 7679727 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7679923 7680189 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7680384 7680538 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7680602 7680748 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7680941 7681074 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7681146 7681321 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7681643 7682011 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7682305 7682546 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7682638 7682839 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7683078 7683461 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7683775 7684023 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7684274 7684306 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7684388 7684558 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7684618 7684677 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7684892 7685086 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7685145 7685879 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7686389 7687282 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild exon 7687565 7687600 . - . gene_id "RvY_02753"; transcript_id "RvY_02753.1"; Scaffold001 rebuild transcript 7688544 7690206 . - . gene_id "RvY_02754"; transcript_id "RvY_02754.1"; gene_name "Cupin_4"; annotation "putative JmjC domain-containing protein 5"; Pfam "[Cupin_8] Cupin-like domain|[Cupin_4] Cupin superfamily protein"; CDD "Cupin superfamily protein. This family contains many hypothetical proteins that belong to the cupin superfamily."; similar_genes "JMJD5_BOVIN(e-value:1.7e-38;bit-score:157.0)"; Scaffold001 rebuild exon 7688544 7688914 . - . gene_id "RvY_02754"; transcript_id "RvY_02754.1"; Scaffold001 rebuild exon 7689099 7689542 . - . gene_id "RvY_02754"; transcript_id "RvY_02754.1"; Scaffold001 rebuild exon 7689768 7690206 . - . gene_id "RvY_02754"; transcript_id "RvY_02754.1"; Scaffold001 rebuild transcript 7691613 7692887 . + . gene_id "RvY_02755"; transcript_id "RvY_02755.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold001 rebuild exon 7691613 7691937 . + . gene_id "RvY_02755"; transcript_id "RvY_02755.1"; Scaffold001 rebuild exon 7692133 7692887 . + . gene_id "RvY_02755"; transcript_id "RvY_02755.1"; Scaffold001 rebuild transcript 7692948 7695037 . - . gene_id "RvY_02756"; transcript_id "RvY_02756.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 7692948 7693301 . - . gene_id "RvY_02756"; transcript_id "RvY_02756.1"; Scaffold001 rebuild exon 7693367 7693547 . - . gene_id "RvY_02756"; transcript_id "RvY_02756.1"; Scaffold001 rebuild exon 7694220 7694470 . - . gene_id "RvY_02756"; transcript_id "RvY_02756.1"; Scaffold001 rebuild exon 7694912 7695037 . - . gene_id "RvY_02756"; transcript_id "RvY_02756.1"; Scaffold001 rebuild transcript 7695762 7696037 . + . gene_id "RvY_02757"; transcript_id "RvY_02757.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 7695762 7696037 . + . gene_id "RvY_02757"; transcript_id "RvY_02757.1"; Scaffold001 rebuild transcript 7698073 7699638 . - . gene_id "RvY_02758"; transcript_id "RvY_02758.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7698073 7698530 . - . gene_id "RvY_02758"; transcript_id "RvY_02758.1"; Scaffold001 rebuild exon 7699578 7699638 . - . gene_id "RvY_02758"; transcript_id "RvY_02758.1"; Scaffold001 rebuild transcript 7699722 7702876 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 7699722 7700243 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; Scaffold001 rebuild exon 7700821 7701216 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; Scaffold001 rebuild exon 7701502 7701962 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; Scaffold001 rebuild exon 7702123 7702290 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; Scaffold001 rebuild exon 7702489 7702682 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; Scaffold001 rebuild exon 7702770 7702876 . + . gene_id "RvY_02759"; transcript_id "RvY_02759.1"; Scaffold001 rebuild transcript 7703095 7704486 . - . gene_id "RvY_02760"; transcript_id "RvY_02760.1"; annotation "hypothetical protein."; Pfam "[RNA_GG_bind] PHAX RNA-binding domain"; KO "K14291"; Scaffold001 rebuild exon 7703095 7703484 . - . gene_id "RvY_02760"; transcript_id "RvY_02760.1"; Scaffold001 rebuild exon 7703737 7703828 . - . gene_id "RvY_02760"; transcript_id "RvY_02760.1"; Scaffold001 rebuild exon 7703895 7704486 . - . gene_id "RvY_02760"; transcript_id "RvY_02760.1"; Scaffold001 rebuild transcript 7705400 7708741 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; similar_genes "S2611_BOVIN(e-value:3.3e-20;bit-score:96.0)"; Scaffold001 rebuild exon 7705400 7705705 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild exon 7706009 7706216 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild exon 7706296 7706461 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild exon 7706548 7706684 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild exon 7707037 7707441 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild exon 7707678 7708054 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild exon 7708502 7708741 . + . gene_id "RvY_02761"; transcript_id "RvY_02761.1"; Scaffold001 rebuild transcript 7710060 7715601 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; annotation "hypothetical protein."; Pfam "[Vps5] Vps5 C terminal like"; Scaffold001 rebuild exon 7710060 7710203 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7710297 7710410 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7710713 7710816 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7710895 7710970 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7711170 7711325 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7711385 7711415 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7711481 7711553 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7711614 7711797 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7712164 7712253 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7714553 7714618 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild exon 7715404 7715601 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.1"; Scaffold001 rebuild transcript 7710060 7715601 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; annotation "hypothetical protein."; Pfam "[Vps5] Vps5 C terminal like"; Scaffold001 rebuild exon 7710060 7710203 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7710297 7710410 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7710713 7710816 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7710895 7710970 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7711170 7711325 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7711385 7711415 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7711481 7711553 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7711614 7711653 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7711711 7711797 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7712164 7712253 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7714553 7714618 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild exon 7715404 7715601 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.2"; Scaffold001 rebuild transcript 7713821 7714444 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.3"; annotation "hypothetical protein."; Pfam "[Vps5] Vps5 C terminal like"; Scaffold001 rebuild exon 7713821 7714444 . + . gene_id "RvY_02762"; transcript_id "RvY_02762.3"; Scaffold001 rebuild transcript 7716048 7717743 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; gene_name "WD40"; annotation "putative WD repeat-containing protein 82"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14962"; similar_genes "WDR82_CHICK(e-value:3.5e-30;bit-score:129.0)"; Scaffold001 rebuild exon 7716048 7716353 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; Scaffold001 rebuild exon 7716523 7716678 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; Scaffold001 rebuild exon 7716749 7716986 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; Scaffold001 rebuild exon 7717233 7717299 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; Scaffold001 rebuild exon 7717391 7717488 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; Scaffold001 rebuild exon 7717580 7717743 . - . gene_id "RvY_02763"; transcript_id "RvY_02763.1"; Scaffold001 rebuild transcript 7718470 7722900 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; gene_name "LNS2"; annotation "putative Phosphatidate phosphatase LPIN1"; Pfam "[Lipin_N] lipin, N-terminal conserved region|[LNS2] LNS2 (Lipin/Ned1/Smp2)"; CDD "LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance."; EC "EC3.1.3.4"; KO "K15728"; similar_genes "LPIN1_HUMAN(e-value:5.5e-35;bit-score:145.0)"; Scaffold001 rebuild exon 7718470 7718974 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7719369 7719608 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7719819 7719967 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7720041 7720389 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7720569 7720797 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7721007 7721227 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7721452 7721801 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7722065 7722382 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild exon 7722622 7722900 . - . gene_id "RvY_02764"; transcript_id "RvY_02764.1"; Scaffold001 rebuild transcript 7724993 7726983 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7724993 7725295 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild exon 7725723 7725869 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild exon 7725967 7726164 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild exon 7726244 7726309 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild exon 7726474 7726626 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild exon 7726688 7726820 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild exon 7726877 7726983 . - . gene_id "RvY_02765"; transcript_id "RvY_02765.1"; Scaffold001 rebuild transcript 7727786 7728884 . - . gene_id "RvY_02766"; transcript_id "RvY_02766.1"; gene_name "THG1"; annotation "Probable tRNA(His) guanylyltransferase"; Pfam "[Thg1C] Thg1 C terminal domain|[Thg1] tRNAHis guanylyltransferase"; EC "EC2.7.7.-"; KO "K10761"; similar_genes "THG1_DICDI(e-value:1.3e-72;bit-score:270.0)"; Scaffold001 rebuild exon 7727786 7728305 . - . gene_id "RvY_02766"; transcript_id "RvY_02766.1"; Scaffold001 rebuild exon 7728453 7728629 . - . gene_id "RvY_02766"; transcript_id "RvY_02766.1"; Scaffold001 rebuild exon 7728781 7728884 . - . gene_id "RvY_02766"; transcript_id "RvY_02766.1"; Scaffold001 rebuild transcript 7729387 7732564 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[BTB] BTB/POZ domain|[Kelch_5] Kelch motif|[DUF3342]|[BACK] BTB And C-terminal Kelch|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; similar_genes "KLH17_MOUSE(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 7729387 7729748 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7729911 7730187 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7730415 7730718 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7730862 7731140 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7731441 7731767 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7731867 7731944 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7732227 7732430 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild exon 7732500 7732564 . + . gene_id "RvY_02767"; transcript_id "RvY_02767.1"; Scaffold001 rebuild transcript 7733808 7734147 . - . gene_id "RvY_02768"; transcript_id "RvY_02768.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7733808 7734041 . - . gene_id "RvY_02768"; transcript_id "RvY_02768.1"; Scaffold001 rebuild exon 7734109 7734147 . - . gene_id "RvY_02768"; transcript_id "RvY_02768.1"; Scaffold001 rebuild transcript 7734460 7735056 . + . gene_id "RvY_02769"; transcript_id "RvY_02769.1"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold001 rebuild exon 7734460 7735056 . + . gene_id "RvY_02769"; transcript_id "RvY_02769.1"; Scaffold001 rebuild transcript 7735310 7737032 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.1"; gene_name "CA"; annotation "hypothetical protein."; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold001 rebuild exon 7735310 7736062 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.1"; Scaffold001 rebuild exon 7736233 7736532 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.1"; Scaffold001 rebuild exon 7736622 7737032 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.1"; Scaffold001 rebuild transcript 7735310 7736996 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.2"; gene_name "CA"; annotation "hypothetical protein."; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold001 rebuild exon 7735310 7736062 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.2"; Scaffold001 rebuild exon 7736233 7736532 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.2"; Scaffold001 rebuild exon 7736622 7736996 . - . gene_id "RvY_02770"; transcript_id "RvY_02770.2"; Scaffold001 rebuild transcript 7737447 7740323 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; gene_name "COG5191"; annotation "hypothetical protein."; Pfam "[U3_assoc_6] U3 small nucleolar RNA-associated protein 6|[TPR_14] Tetratricopeptide repeat"; CDD "Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]"; KO "K14557"; Scaffold001 rebuild exon 7737447 7737607 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7737674 7737992 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7738190 7738378 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7738460 7738632 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7738763 7739177 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7739336 7739454 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7739617 7739749 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7739818 7739889 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7739956 7739997 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7740070 7740154 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild exon 7740232 7740323 . - . gene_id "RvY_02771"; transcript_id "RvY_02771.1"; Scaffold001 rebuild transcript 7740686 7742224 . - . gene_id "RvY_02772"; transcript_id "RvY_02772.1"; annotation "hypothetical protein."; Pfam "[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; Scaffold001 rebuild exon 7740686 7741180 . - . gene_id "RvY_02772"; transcript_id "RvY_02772.1"; Scaffold001 rebuild exon 7741251 7741443 . - . gene_id "RvY_02772"; transcript_id "RvY_02772.1"; Scaffold001 rebuild exon 7741641 7741999 . - . gene_id "RvY_02772"; transcript_id "RvY_02772.1"; Scaffold001 rebuild exon 7742072 7742224 . - . gene_id "RvY_02772"; transcript_id "RvY_02772.1"; Scaffold001 rebuild transcript 7742453 7744484 . - . gene_id "RvY_02773"; transcript_id "RvY_02773.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7742453 7743363 . - . gene_id "RvY_02773"; transcript_id "RvY_02773.1"; Scaffold001 rebuild exon 7743470 7743646 . - . gene_id "RvY_02773"; transcript_id "RvY_02773.1"; Scaffold001 rebuild exon 7743821 7744074 . - . gene_id "RvY_02773"; transcript_id "RvY_02773.1"; Scaffold001 rebuild exon 7744139 7744319 . - . gene_id "RvY_02773"; transcript_id "RvY_02773.1"; Scaffold001 rebuild exon 7744394 7744484 . - . gene_id "RvY_02773"; transcript_id "RvY_02773.1"; Scaffold001 rebuild transcript 7747233 7747748 . - . gene_id "RvY_02774"; transcript_id "RvY_02774.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7747233 7747748 . - . gene_id "RvY_02774"; transcript_id "RvY_02774.1"; Scaffold001 rebuild transcript 7750147 7752872 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; gene_name "RAD23"; annotation "UV excision repair protein RAD23"; Pfam "[ubiquitin] Ubiquitin family|[XPC-binding]|[UBA] UBA/TS-N domain"; CDD "UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10839"; similar_genes "RHP23_SCHPO(e-value:1.0e-06;bit-score:51.0)"; Scaffold001 rebuild exon 7750147 7750212 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7750277 7750355 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7750497 7750617 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7750859 7751061 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7751144 7751184 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7752057 7752120 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7752178 7752302 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7752388 7752591 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild exon 7752753 7752872 . + . gene_id "RvY_02775"; transcript_id "RvY_02775.1"; Scaffold001 rebuild transcript 7753265 7757815 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; gene_name "GRIF"; annotation "Glutamate receptor, ionotropic kainate 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05387"; similar_genes "GRIK1_RAT(e-value:1.5e-77;bit-score:287.0)"; Scaffold001 rebuild exon 7753265 7753364 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7753425 7753568 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7753702 7753923 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7754182 7754408 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7754481 7754621 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7754808 7755062 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7755138 7755303 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7756168 7756355 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7756424 7756783 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7756940 7757312 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7757377 7757636 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild exon 7757711 7757815 . + . gene_id "RvY_02776"; transcript_id "RvY_02776.1"; Scaffold001 rebuild transcript 7757972 7759538 . - . gene_id "RvY_02777"; transcript_id "RvY_02777.1"; gene_name "(1)STKc_PKA(2)STKc_AGC"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and Scaffold001 rebuild exon 7757972 7758150 . - . gene_id "RvY_02777"; transcript_id "RvY_02777.1"; Scaffold001 rebuild exon 7758455 7759538 . - . gene_id "RvY_02777"; transcript_id "RvY_02777.1"; Scaffold001 rebuild transcript 7758444 7759538 . - . gene_id "RvY_02777"; transcript_id "RvY_02777.2"; gene_name "(1)STKc_PKA(2)STKc_AGC"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and Scaffold001 rebuild exon 7758444 7759538 . - . gene_id "RvY_02777"; transcript_id "RvY_02777.2"; Scaffold001 rebuild transcript 7761507 7771508 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; gene_name "MRC"; annotation "mannose receptor, C type"; Pfam "[Lectin_C] Lectin C-type domain|[Herpes_UL45] UL45 protein"; CDD "C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules."; KO "K06560"; Scaffold001 rebuild exon 7761507 7762096 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7762178 7762274 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7762343 7762596 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7762826 7763287 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7763348 7763453 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7763545 7763834 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7763904 7764386 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7764465 7764667 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7764733 7764998 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7765374 7765708 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7765769 7766063 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7766131 7766294 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7766373 7766546 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7766634 7766804 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7767621 7767791 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7768122 7768322 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7768409 7768607 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7768721 7768815 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7768917 7769078 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7769162 7769269 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7769344 7769493 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7769561 7769649 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7769797 7769932 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7770028 7770206 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7770275 7770499 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7770617 7770725 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7770803 7770945 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7771037 7771179 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild exon 7771278 7771508 . - . gene_id "RvY_02778"; transcript_id "RvY_02778.1"; Scaffold001 rebuild transcript 7773542 7778036 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; annotation "hypothetical protein."; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_11] TPR repeat"; similar_genes "TTC30_XENTR(e-value:5.1e-08;bit-score:56.0)"; Scaffold001 rebuild exon 7773542 7773663 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7773755 7773966 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7774164 7774339 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7774428 7774644 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7776143 7776339 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7776624 7777198 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7777315 7777450 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7777515 7777781 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7777854 7777919 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild exon 7777989 7778036 . - . gene_id "RvY_02779"; transcript_id "RvY_02779.1"; Scaffold001 rebuild transcript 7778435 7780473 . - . gene_id "RvY_02780"; transcript_id "RvY_02780.1"; annotation "hypothetical protein."; Pfam "[KH_3] KH domain|[KH_1] KH domain"; Scaffold001 rebuild exon 7778435 7779172 . - . gene_id "RvY_02780"; transcript_id "RvY_02780.1"; Scaffold001 rebuild exon 7779313 7779660 . - . gene_id "RvY_02780"; transcript_id "RvY_02780.1"; Scaffold001 rebuild exon 7780033 7780473 . - . gene_id "RvY_02780"; transcript_id "RvY_02780.1"; Scaffold001 rebuild transcript 7781062 7781598 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.1"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold001 rebuild exon 7781062 7781598 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.1"; Scaffold001 rebuild transcript 7781062 7781598 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.2"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold001 rebuild exon 7781062 7781445 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.2"; Scaffold001 rebuild exon 7781560 7781598 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.2"; Scaffold001 rebuild transcript 7781062 7781598 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.3"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold001 rebuild exon 7781062 7781445 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.3"; Scaffold001 rebuild exon 7781593 7781598 . - . gene_id "RvY_02781"; transcript_id "RvY_02781.3"; Scaffold001 rebuild transcript 7782132 7788134 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; gene_name "DDB1"; annotation "DNA damage-binding protein 1"; Pfam "[MMS1_N] Mono-functional DNA-alkylating methyl methanesulfonate N-term|[CPSF_A] CPSF A subunit region"; KO "K10610"; Scaffold001 rebuild exon 7782132 7782405 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7782629 7783045 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7783431 7783653 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7783791 7784110 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7784539 7784827 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7785250 7785580 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7785748 7786002 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7786224 7786568 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7786744 7787074 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7787316 7787643 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild exon 7787798 7788134 . - . gene_id "RvY_02782"; transcript_id "RvY_02782.1"; Scaffold001 rebuild transcript 7789756 7790554 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7789756 7790125 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.1"; Scaffold001 rebuild exon 7790376 7790554 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.1"; Scaffold001 rebuild transcript 7789677 7790554 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7789677 7789789 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.2"; Scaffold001 rebuild exon 7789914 7790125 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.2"; Scaffold001 rebuild exon 7790376 7790554 . + . gene_id "RvY_02783"; transcript_id "RvY_02783.2"; Scaffold001 rebuild transcript 7791374 7792922 . - . gene_id "RvY_02784"; transcript_id "RvY_02784.1"; gene_name "DAGAT"; annotation "hypothetical protein."; Pfam "[DAGAT] Diacylglycerol acyltransferase"; CDD "Diacylglycerol acyltransferase. The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT)."; EC "EC2.3.1.20"; KO "K14457"; similar_genes "DGAT2_MOUSE(e-value:1.2e-13;bit-score:74.0)"; Scaffold001 rebuild exon 7791374 7791531 . - . gene_id "RvY_02784"; transcript_id "RvY_02784.1"; Scaffold001 rebuild exon 7791599 7791786 . - . gene_id "RvY_02784"; transcript_id "RvY_02784.1"; Scaffold001 rebuild exon 7792086 7792608 . - . gene_id "RvY_02784"; transcript_id "RvY_02784.1"; Scaffold001 rebuild exon 7792679 7792922 . - . gene_id "RvY_02784"; transcript_id "RvY_02784.1"; Scaffold001 rebuild transcript 7793670 7794740 . - . gene_id "RvY_02785"; transcript_id "RvY_02785.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Ubie_methyltran] ubiE/COQ5 methyltransferase family|[Methyltransf_23] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; Scaffold001 rebuild exon 7793670 7793977 . - . gene_id "RvY_02785"; transcript_id "RvY_02785.1"; Scaffold001 rebuild exon 7794287 7794740 . - . gene_id "RvY_02785"; transcript_id "RvY_02785.1"; Scaffold001 rebuild transcript 7795557 7797387 . + . gene_id "RvY_02786"; transcript_id "RvY_02786.1"; annotation "hypothetical protein."; Pfam "[DUF2246] Uncharacterized conserved protein (DUF2246)"; similar_genes "MMAD_RAT(e-value:6.3e-17;bit-score:85.0)"; Scaffold001 rebuild exon 7795557 7795680 . + . gene_id "RvY_02786"; transcript_id "RvY_02786.1"; Scaffold001 rebuild exon 7795994 7796250 . + . gene_id "RvY_02786"; transcript_id "RvY_02786.1"; Scaffold001 rebuild exon 7796549 7796904 . + . gene_id "RvY_02786"; transcript_id "RvY_02786.1"; Scaffold001 rebuild exon 7797231 7797387 . + . gene_id "RvY_02786"; transcript_id "RvY_02786.1"; Scaffold001 rebuild transcript 7798988 7799176 . - . gene_id "RvY_02787"; transcript_id "RvY_02787.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7798988 7799176 . - . gene_id "RvY_02787"; transcript_id "RvY_02787.1"; Scaffold001 rebuild transcript 7799421 7800767 . + . gene_id "RvY_02788"; transcript_id "RvY_02788.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7799421 7799857 . + . gene_id "RvY_02788"; transcript_id "RvY_02788.1"; Scaffold001 rebuild exon 7800129 7800384 . + . gene_id "RvY_02788"; transcript_id "RvY_02788.1"; Scaffold001 rebuild exon 7800684 7800767 . + . gene_id "RvY_02788"; transcript_id "RvY_02788.1"; Scaffold001 rebuild transcript 7801635 7801844 . + . gene_id "RvY_02789"; transcript_id "RvY_02789.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7801635 7801844 . + . gene_id "RvY_02789"; transcript_id "RvY_02789.1"; Scaffold001 rebuild transcript 7802480 7803040 . + . gene_id "RvY_02790"; transcript_id "RvY_02790.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7802480 7803040 . + . gene_id "RvY_02790"; transcript_id "RvY_02790.1"; Scaffold001 rebuild transcript 7803084 7805796 . + . gene_id "RvY_02791"; transcript_id "RvY_02791.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7803084 7803224 . + . gene_id "RvY_02791"; transcript_id "RvY_02791.1"; Scaffold001 rebuild exon 7804040 7804228 . + . gene_id "RvY_02791"; transcript_id "RvY_02791.1"; Scaffold001 rebuild exon 7804309 7804469 . + . gene_id "RvY_02791"; transcript_id "RvY_02791.1"; Scaffold001 rebuild exon 7805643 7805796 . + . gene_id "RvY_02791"; transcript_id "RvY_02791.1"; Scaffold001 rebuild transcript 7806720 7807758 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.1"; annotation "hypothetical protein."; Pfam "[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold001 rebuild exon 7806720 7806939 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.1"; Scaffold001 rebuild exon 7807154 7807758 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.1"; Scaffold001 rebuild transcript 7806143 7807267 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.2"; annotation "hypothetical protein."; Pfam "[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold001 rebuild exon 7806143 7806188 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.2"; Scaffold001 rebuild exon 7806269 7806394 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.2"; Scaffold001 rebuild exon 7806522 7806575 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.2"; Scaffold001 rebuild exon 7806634 7806939 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.2"; Scaffold001 rebuild exon 7807155 7807267 . + . gene_id "RvY_02792"; transcript_id "RvY_02792.2"; Scaffold001 rebuild transcript 7807579 7808949 . - . gene_id "RvY_02793"; transcript_id "RvY_02793.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7807579 7808949 . - . gene_id "RvY_02793"; transcript_id "RvY_02793.1"; Scaffold001 rebuild transcript 7809471 7809977 . - . gene_id "RvY_02794"; transcript_id "RvY_02794.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold001 rebuild exon 7809471 7809977 . - . gene_id "RvY_02794"; transcript_id "RvY_02794.1"; Scaffold001 rebuild transcript 7812073 7814335 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_17] Tetratricopeptide repeat"; Scaffold001 rebuild exon 7812073 7812321 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild exon 7812665 7812751 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild exon 7812841 7812966 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild exon 7813034 7813165 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild exon 7813234 7813357 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild exon 7813669 7814156 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild exon 7814228 7814335 . - . gene_id "RvY_02795"; transcript_id "RvY_02795.1"; Scaffold001 rebuild transcript 7814680 7816290 . + . gene_id "RvY_02796"; transcript_id "RvY_02796.1"; gene_name "K08077"; annotation "UDP-sugar diphosphatase [EC:3.6.1.45]"; Pfam "[NUDIX]"; CDD "nudix hydrolase, YffH family. Fixed com_name to TIGR standard. wn."; EC "EC3.6.1.45"; KO "K08077"; similar_genes "NUD14_BOVIN(e-value:1.2e-11;bit-score:68.0)"; Scaffold001 rebuild exon 7814680 7814797 . + . gene_id "RvY_02796"; transcript_id "RvY_02796.1"; Scaffold001 rebuild exon 7815071 7815135 . + . gene_id "RvY_02796"; transcript_id "RvY_02796.1"; Scaffold001 rebuild exon 7815221 7815329 . + . gene_id "RvY_02796"; transcript_id "RvY_02796.1"; Scaffold001 rebuild exon 7815613 7815820 . + . gene_id "RvY_02796"; transcript_id "RvY_02796.1"; Scaffold001 rebuild exon 7816044 7816290 . + . gene_id "RvY_02796"; transcript_id "RvY_02796.1"; Scaffold001 rebuild transcript 7816856 7817515 . - . gene_id "RvY_02797"; transcript_id "RvY_02797.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7816856 7817515 . - . gene_id "RvY_02797"; transcript_id "RvY_02797.1"; Scaffold001 rebuild transcript 7819004 7819967 . - . gene_id "RvY_02798"; transcript_id "RvY_02798.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7819004 7819338 . - . gene_id "RvY_02798"; transcript_id "RvY_02798.1"; Scaffold001 rebuild exon 7819405 7819678 . - . gene_id "RvY_02798"; transcript_id "RvY_02798.1"; Scaffold001 rebuild exon 7819749 7819967 . - . gene_id "RvY_02798"; transcript_id "RvY_02798.1"; Scaffold001 rebuild transcript 7821143 7821703 . - . gene_id "RvY_02799"; transcript_id "RvY_02799.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7821143 7821703 . - . gene_id "RvY_02799"; transcript_id "RvY_02799.1"; Scaffold001 rebuild transcript 7822682 7823545 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7822682 7823389 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.1"; Scaffold001 rebuild exon 7823453 7823545 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.1"; Scaffold001 rebuild transcript 7821820 7823000 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7821820 7822295 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.2"; Scaffold001 rebuild exon 7822913 7823000 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.2"; Scaffold001 rebuild transcript 7821820 7822435 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7821820 7822295 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.3"; Scaffold001 rebuild exon 7822378 7822435 . - . gene_id "RvY_02800"; transcript_id "RvY_02800.3"; Scaffold001 rebuild transcript 7825104 7826027 . + . gene_id "RvY_02802"; transcript_id "RvY_02802.1"; gene_name "COG3885"; annotation "hypothetical protein."; Pfam "[LigB] Catalytic LigB subunit of aromatic ring-opening dioxygenase"; CDD "Uncharacterized conserved protein [Function unknown]"; Scaffold001 rebuild exon 7825104 7826027 . + . gene_id "RvY_02802"; transcript_id "RvY_02802.1"; Scaffold001 rebuild transcript 7826931 7828342 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 7826931 7827130 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.1"; Scaffold001 rebuild exon 7827201 7827440 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.1"; Scaffold001 rebuild exon 7827628 7827842 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.1"; Scaffold001 rebuild exon 7827913 7828060 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.1"; Scaffold001 rebuild exon 7828123 7828342 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.1"; Scaffold001 rebuild transcript 7826931 7828324 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.2"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 7826931 7827130 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.2"; Scaffold001 rebuild exon 7827201 7827440 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.2"; Scaffold001 rebuild exon 7827628 7827842 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.2"; Scaffold001 rebuild exon 7827913 7828060 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.2"; Scaffold001 rebuild exon 7828123 7828324 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.2"; Scaffold001 rebuild transcript 7827190 7828324 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.3"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 7827190 7827440 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.3"; Scaffold001 rebuild exon 7827628 7827842 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.3"; Scaffold001 rebuild exon 7827913 7828060 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.3"; Scaffold001 rebuild exon 7828123 7828324 . - . gene_id "RvY_02803"; transcript_id "RvY_02803.3"; Scaffold001 rebuild transcript 7828706 7830738 . - . gene_id "RvY_02804"; transcript_id "RvY_02804.1"; annotation "hypothetical protein."; Pfam "[NuA4] Histone acetyltransferase subunit NuA4"; Scaffold001 rebuild exon 7828706 7828917 . - . gene_id "RvY_02804"; transcript_id "RvY_02804.1"; Scaffold001 rebuild exon 7829266 7829706 . - . gene_id "RvY_02804"; transcript_id "RvY_02804.1"; Scaffold001 rebuild exon 7829915 7830261 . - . gene_id "RvY_02804"; transcript_id "RvY_02804.1"; Scaffold001 rebuild exon 7830428 7830738 . - . gene_id "RvY_02804"; transcript_id "RvY_02804.1"; Scaffold001 rebuild transcript 7830660 7832317 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; gene_name "MPDU1"; annotation "mannose-P-dolichol utilization defect 1"; Pfam "[PQ-loop] PQ loop repeat"; CDD "Lysosomal Cystine Transporter."; KO "K09660"; similar_genes "MPU1_HUMAN(e-value:2.3e-10;bit-score:63.0)"; Scaffold001 rebuild exon 7830660 7830671 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; Scaffold001 rebuild exon 7831130 7831307 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; Scaffold001 rebuild exon 7831379 7831444 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; Scaffold001 rebuild exon 7831522 7831654 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; Scaffold001 rebuild exon 7831790 7831994 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; Scaffold001 rebuild exon 7832060 7832317 . + . gene_id "RvY_02805"; transcript_id "RvY_02805.1"; Scaffold001 rebuild transcript 7832925 7833524 . - . gene_id "RvY_02806"; transcript_id "RvY_02806.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7832925 7833524 . - . gene_id "RvY_02806"; transcript_id "RvY_02806.1"; Scaffold001 rebuild transcript 7833757 7834131 . - . gene_id "RvY_02807"; transcript_id "RvY_02807.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7833757 7834131 . - . gene_id "RvY_02807"; transcript_id "RvY_02807.1"; Scaffold001 rebuild transcript 7834131 7835206 . - . gene_id "RvY_02808"; transcript_id "RvY_02808.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7834131 7834279 . - . gene_id "RvY_02808"; transcript_id "RvY_02808.1"; Scaffold001 rebuild exon 7834954 7835206 . - . gene_id "RvY_02808"; transcript_id "RvY_02808.1"; Scaffold001 rebuild transcript 7834929 7835450 . + . gene_id "RvY_02809"; transcript_id "RvY_02809.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7834929 7835450 . + . gene_id "RvY_02809"; transcript_id "RvY_02809.1"; Scaffold001 rebuild transcript 7835385 7835645 . - . gene_id "RvY_02810"; transcript_id "RvY_02810.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7835385 7835645 . - . gene_id "RvY_02810"; transcript_id "RvY_02810.1"; Scaffold001 rebuild transcript 7835996 7836247 . + . gene_id "RvY_02811"; transcript_id "RvY_02811.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7835996 7836247 . + . gene_id "RvY_02811"; transcript_id "RvY_02811.1"; Scaffold001 rebuild transcript 7836341 7836541 . - . gene_id "RvY_02812"; transcript_id "RvY_02812.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7836341 7836541 . - . gene_id "RvY_02812"; transcript_id "RvY_02812.1"; Scaffold001 rebuild transcript 7838305 7838591 . + . gene_id "RvY_02813"; transcript_id "RvY_02813.0"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7838305 7838353 . + . gene_id "RvY_02813"; transcript_id "RvY_02813.0"; Scaffold001 rebuild exon 7838440 7838591 . + . gene_id "RvY_02813"; transcript_id "RvY_02813.0"; Scaffold001 rebuild transcript 7842356 7843704 . - . gene_id "RvY_02814"; transcript_id "RvY_02814.1"; gene_name "HX"; annotation "hypothetical protein."; CDD "Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat."; Scaffold001 rebuild exon 7842356 7842474 . - . gene_id "RvY_02814"; transcript_id "RvY_02814.1"; Scaffold001 rebuild exon 7842569 7842716 . - . gene_id "RvY_02814"; transcript_id "RvY_02814.1"; Scaffold001 rebuild exon 7842776 7842952 . - . gene_id "RvY_02814"; transcript_id "RvY_02814.1"; Scaffold001 rebuild exon 7843025 7843329 . - . gene_id "RvY_02814"; transcript_id "RvY_02814.1"; Scaffold001 rebuild exon 7843497 7843704 . - . gene_id "RvY_02814"; transcript_id "RvY_02814.1"; Scaffold001 rebuild transcript 7844794 7846606 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; gene_name "HX"; annotation "hypothetical protein."; Pfam "[Hemopexin]"; CDD "Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat."; Scaffold001 rebuild exon 7844794 7844970 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild exon 7845142 7845247 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild exon 7845310 7845531 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild exon 7845593 7845945 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild exon 7846010 7846186 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild exon 7846264 7846408 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild exon 7846473 7846606 . + . gene_id "RvY_02815"; transcript_id "RvY_02815.1"; Scaffold001 rebuild transcript 7847346 7849067 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; gene_name "PRK07764"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold001 rebuild exon 7847346 7847502 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7847602 7847928 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7847990 7848114 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7848194 7848382 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7848451 7848592 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7848656 7848785 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7848857 7848908 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild exon 7848990 7849067 . + . gene_id "RvY_02816"; transcript_id "RvY_02816.1"; Scaffold001 rebuild transcript 7850099 7850385 . - . gene_id "RvY_02817"; transcript_id "RvY_02817.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7850099 7850250 . - . gene_id "RvY_02817"; transcript_id "RvY_02817.1"; Scaffold001 rebuild exon 7850337 7850385 . - . gene_id "RvY_02817"; transcript_id "RvY_02817.1"; Scaffold001 rebuild transcript 7851251 7853573 . - . gene_id "RvY_02818"; transcript_id "RvY_02818.1"; annotation "hypothetical protein."; Pfam "[zf-RING_2] Ring finger domain"; Scaffold001 rebuild exon 7851251 7851414 . - . gene_id "RvY_02818"; transcript_id "RvY_02818.1"; Scaffold001 rebuild exon 7852344 7852694 . - . gene_id "RvY_02818"; transcript_id "RvY_02818.1"; Scaffold001 rebuild exon 7853438 7853573 . - . gene_id "RvY_02818"; transcript_id "RvY_02818.1"; Scaffold001 rebuild transcript 7854745 7855209 . - . gene_id "RvY_02819"; transcript_id "RvY_02819.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7854745 7855209 . - . gene_id "RvY_02819"; transcript_id "RvY_02819.1"; Scaffold001 rebuild transcript 7855345 7856556 . - . gene_id "RvY_02820"; transcript_id "RvY_02820.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7855345 7855743 . - . gene_id "RvY_02820"; transcript_id "RvY_02820.1"; Scaffold001 rebuild exon 7855834 7856556 . - . gene_id "RvY_02820"; transcript_id "RvY_02820.1"; Scaffold001 rebuild transcript 7856560 7856977 . - . gene_id "RvY_02821"; transcript_id "RvY_02821.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7856560 7856627 . - . gene_id "RvY_02821"; transcript_id "RvY_02821.1"; Scaffold001 rebuild exon 7856701 7856977 . - . gene_id "RvY_02821"; transcript_id "RvY_02821.1"; Scaffold001 rebuild transcript 7857295 7859459 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7857295 7857418 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7857499 7857770 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7857902 7858343 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7858473 7858535 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7858632 7858730 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7858800 7858856 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7858931 7859215 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild exon 7859302 7859459 . + . gene_id "RvY_02822"; transcript_id "RvY_02822.1"; Scaffold001 rebuild transcript 7860480 7861150 . - . gene_id "RvY_02823"; transcript_id "RvY_02823.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7860480 7860676 . - . gene_id "RvY_02823"; transcript_id "RvY_02823.1"; Scaffold001 rebuild exon 7860784 7860850 . - . gene_id "RvY_02823"; transcript_id "RvY_02823.1"; Scaffold001 rebuild exon 7861043 7861150 . - . gene_id "RvY_02823"; transcript_id "RvY_02823.1"; Scaffold001 rebuild transcript 7861812 7862604 . + . gene_id "RvY_02824"; transcript_id "RvY_02824.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7861812 7861983 . + . gene_id "RvY_02824"; transcript_id "RvY_02824.1"; Scaffold001 rebuild exon 7862065 7862292 . + . gene_id "RvY_02824"; transcript_id "RvY_02824.1"; Scaffold001 rebuild exon 7862362 7862445 . + . gene_id "RvY_02824"; transcript_id "RvY_02824.1"; Scaffold001 rebuild exon 7862522 7862604 . + . gene_id "RvY_02824"; transcript_id "RvY_02824.1"; Scaffold001 rebuild transcript 7864665 7869091 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; gene_name "CUL3"; annotation "Cullin-3"; Pfam "[Cullin] Cullin family|[Cullin_Nedd8] Cullin protein neddylation domain"; KO "K03869"; similar_genes "CUL3_XENTR(e-value:8.2e-68;bit-score:254.0)"; Scaffold001 rebuild exon 7864665 7864745 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7865276 7865476 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7865552 7865668 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7866050 7866554 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7866928 7867076 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7867149 7867325 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7867518 7867796 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7867868 7867989 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7868080 7868429 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7868497 7868565 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7868645 7868894 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild exon 7869067 7869091 . + . gene_id "RvY_02825"; transcript_id "RvY_02825.1"; Scaffold001 rebuild transcript 7872159 7872796 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7872159 7872345 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.1"; Scaffold001 rebuild exon 7872456 7872796 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.1"; Scaffold001 rebuild transcript 7872159 7872892 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7872159 7872213 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.2"; Scaffold001 rebuild exon 7872283 7872345 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.2"; Scaffold001 rebuild exon 7872456 7872751 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.2"; Scaffold001 rebuild exon 7872821 7872892 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.2"; Scaffold001 rebuild transcript 7872159 7872796 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7872159 7872213 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.3"; Scaffold001 rebuild exon 7872283 7872345 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.3"; Scaffold001 rebuild exon 7872456 7872796 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.3"; Scaffold001 rebuild transcript 7872371 7872796 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.4"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7872371 7872796 . + . gene_id "RvY_02826"; transcript_id "RvY_02826.4"; Scaffold001 rebuild transcript 7873179 7873775 . + . gene_id "RvY_02827"; transcript_id "RvY_02827.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7873179 7873343 . + . gene_id "RvY_02827"; transcript_id "RvY_02827.1"; Scaffold001 rebuild exon 7873503 7873775 . + . gene_id "RvY_02827"; transcript_id "RvY_02827.1"; Scaffold001 rebuild transcript 7874854 7875550 . + . gene_id "RvY_02828"; transcript_id "RvY_02828.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7874854 7875193 . + . gene_id "RvY_02828"; transcript_id "RvY_02828.1"; Scaffold001 rebuild exon 7875510 7875550 . + . gene_id "RvY_02828"; transcript_id "RvY_02828.1"; Scaffold001 rebuild transcript 7876867 7877139 . - . gene_id "RvY_02829"; transcript_id "RvY_02829.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 7876867 7877139 . - . gene_id "RvY_02829"; transcript_id "RvY_02829.1"; Scaffold001 rebuild transcript 7877442 7878152 . + . gene_id "RvY_02830"; transcript_id "RvY_02830.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7877442 7878152 . + . gene_id "RvY_02830"; transcript_id "RvY_02830.1"; Scaffold001 rebuild transcript 7878724 7880028 . + . gene_id "RvY_02831"; transcript_id "RvY_02831.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 7878724 7880028 . + . gene_id "RvY_02831"; transcript_id "RvY_02831.1"; Scaffold001 rebuild transcript 7880141 7880604 . - . gene_id "RvY_02832"; transcript_id "RvY_02832.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7880141 7880210 . - . gene_id "RvY_02832"; transcript_id "RvY_02832.1"; Scaffold001 rebuild exon 7880489 7880604 . - . gene_id "RvY_02832"; transcript_id "RvY_02832.1"; Scaffold001 rebuild transcript 7881271 7881729 . + . gene_id "RvY_02833"; transcript_id "RvY_02833.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 7881271 7881729 . + . gene_id "RvY_02833"; transcript_id "RvY_02833.1"; Scaffold001 rebuild transcript 7881731 7882956 . + . gene_id "RvY_02834"; transcript_id "RvY_02834.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7881731 7882130 . + . gene_id "RvY_02834"; transcript_id "RvY_02834.1"; Scaffold001 rebuild exon 7882202 7882956 . + . gene_id "RvY_02834"; transcript_id "RvY_02834.1"; Scaffold001 rebuild transcript 7883428 7883767 . - . gene_id "RvY_02835"; transcript_id "RvY_02835.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7883428 7883495 . - . gene_id "RvY_02835"; transcript_id "RvY_02835.1"; Scaffold001 rebuild exon 7883560 7883767 . - . gene_id "RvY_02835"; transcript_id "RvY_02835.1"; Scaffold001 rebuild transcript 7883911 7884136 . - . gene_id "RvY_02836"; transcript_id "RvY_02836.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7883911 7883961 . - . gene_id "RvY_02836"; transcript_id "RvY_02836.1"; Scaffold001 rebuild exon 7884047 7884136 . - . gene_id "RvY_02836"; transcript_id "RvY_02836.1"; Scaffold001 rebuild transcript 7884273 7884652 . - . gene_id "RvY_02837"; transcript_id "RvY_02837.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7884273 7884357 . - . gene_id "RvY_02837"; transcript_id "RvY_02837.1"; Scaffold001 rebuild exon 7884471 7884652 . - . gene_id "RvY_02837"; transcript_id "RvY_02837.1"; Scaffold001 rebuild transcript 7884726 7885094 . - . gene_id "RvY_02838"; transcript_id "RvY_02838.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7884726 7884871 . - . gene_id "RvY_02838"; transcript_id "RvY_02838.1"; Scaffold001 rebuild exon 7884947 7885094 . - . gene_id "RvY_02838"; transcript_id "RvY_02838.1"; Scaffold001 rebuild transcript 7885421 7885862 . - . gene_id "RvY_02839"; transcript_id "RvY_02839.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7885421 7885753 . - . gene_id "RvY_02839"; transcript_id "RvY_02839.1"; Scaffold001 rebuild exon 7885839 7885862 . - . gene_id "RvY_02839"; transcript_id "RvY_02839.1"; Scaffold001 rebuild transcript 7888805 7891699 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; gene_name "FARSA"; annotation "Phenylalanyl-tRNA synthetase alpha chain"; Pfam "[tRNA-synt_2d] tRNA synthetases class II core domain (F)|[tRNA-synt_2b] tRNA synthetase class II core domain (G, H, P, S and T)|[tRNA-synt_2] tRNA synthetases class II (D, K and N)"; CDD "phenylalanyl-tRNA synthetase; Provisional"; EC "EC6.1.1.20"; KO "K01889"; similar_genes "SYFA_DANRE(e-value:6.2e-85;bit-score:311.0)"; Scaffold001 rebuild exon 7888805 7889086 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7889264 7889514 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7889599 7889691 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7890058 7890186 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7890300 7890415 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7890786 7890970 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7891030 7891276 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild exon 7891479 7891699 . + . gene_id "RvY_02840"; transcript_id "RvY_02840.1"; Scaffold001 rebuild transcript 7895292 7897159 . - . gene_id "RvY_02841"; transcript_id "RvY_02841.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7895292 7895302 . - . gene_id "RvY_02841"; transcript_id "RvY_02841.1"; Scaffold001 rebuild exon 7895487 7895860 . - . gene_id "RvY_02841"; transcript_id "RvY_02841.1"; Scaffold001 rebuild exon 7896660 7897159 . - . gene_id "RvY_02841"; transcript_id "RvY_02841.1"; Scaffold001 rebuild transcript 7897850 7898020 . + . gene_id "RvY_02842"; transcript_id "RvY_02842.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7897850 7898020 . + . gene_id "RvY_02842"; transcript_id "RvY_02842.1"; Scaffold001 rebuild transcript 7898193 7898679 . + . gene_id "RvY_02843"; transcript_id "RvY_02843.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7898193 7898465 . + . gene_id "RvY_02843"; transcript_id "RvY_02843.1"; Scaffold001 rebuild exon 7898542 7898679 . + . gene_id "RvY_02843"; transcript_id "RvY_02843.1"; Scaffold001 rebuild transcript 7899927 7901036 . - . gene_id "RvY_02844"; transcript_id "RvY_02844.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7899927 7901036 . - . gene_id "RvY_02844"; transcript_id "RvY_02844.1"; Scaffold001 rebuild transcript 7901377 7901736 . + . gene_id "RvY_02845"; transcript_id "RvY_02845.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7901377 7901736 . + . gene_id "RvY_02845"; transcript_id "RvY_02845.1"; Scaffold001 rebuild transcript 7902754 7903317 . - . gene_id "RvY_02846"; transcript_id "RvY_02846.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 7902754 7903317 . - . gene_id "RvY_02846"; transcript_id "RvY_02846.1"; Scaffold001 rebuild transcript 7902251 7902757 . - . gene_id "RvY_02846"; transcript_id "RvY_02846.2"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 7902251 7902757 . - . gene_id "RvY_02846"; transcript_id "RvY_02846.2"; Scaffold001 rebuild transcript 7908149 7908448 . - . gene_id "RvY_02847"; transcript_id "RvY_02847.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7908149 7908448 . - . gene_id "RvY_02847"; transcript_id "RvY_02847.1"; Scaffold001 rebuild transcript 7909025 7909483 . - . gene_id "RvY_02848"; transcript_id "RvY_02848.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7909025 7909208 . - . gene_id "RvY_02848"; transcript_id "RvY_02848.1"; Scaffold001 rebuild exon 7909359 7909483 . - . gene_id "RvY_02848"; transcript_id "RvY_02848.1"; Scaffold001 rebuild transcript 7909209 7909508 . - . gene_id "RvY_02848"; transcript_id "RvY_02848.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7909209 7909508 . - . gene_id "RvY_02848"; transcript_id "RvY_02848.2"; Scaffold001 rebuild transcript 7911385 7911756 . + . gene_id "RvY_02849"; transcript_id "RvY_02849.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7911385 7911756 . + . gene_id "RvY_02849"; transcript_id "RvY_02849.1"; Scaffold001 rebuild transcript 7913720 7914923 . + . gene_id "RvY_02850"; transcript_id "RvY_02850.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7913720 7914136 . + . gene_id "RvY_02850"; transcript_id "RvY_02850.1"; Scaffold001 rebuild exon 7914843 7914923 . + . gene_id "RvY_02850"; transcript_id "RvY_02850.1"; Scaffold001 rebuild transcript 7919462 7919695 . + . gene_id "RvY_02851"; transcript_id "RvY_02851.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7919462 7919695 . + . gene_id "RvY_02851"; transcript_id "RvY_02851.1"; Scaffold001 rebuild transcript 7923451 7940115 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; gene_name "FARP2"; annotation "putative FERM, RhoGEF and pleckstrin domain-containing protein 2"; Pfam "[FA] FERM adjacent (FA)|[FERM_N] FERM N-terminal domain|[PH]|[FERM_M] FERM central domain|[RhoGEF]|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; KO "K06082"; similar_genes "FARP2_MOUSE(e-value:2.5e-39;bit-score:160.0)"; Scaffold001 rebuild exon 7923451 7923633 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7928082 7928192 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7928315 7928448 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7928716 7928907 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7929192 7929248 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7929317 7929377 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7929769 7929924 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7930115 7930275 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7930343 7930610 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7930692 7930772 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7931069 7931210 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7935250 7935548 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7936210 7936299 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7936438 7936571 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7938261 7938529 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7938585 7938766 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7938829 7938897 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7939097 7939272 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7939332 7939644 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7939702 7939961 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild exon 7940031 7940115 . + . gene_id "RvY_02852"; transcript_id "RvY_02852.1"; Scaffold001 rebuild transcript 7942787 7945690 . - . gene_id "RvY_02853"; transcript_id "RvY_02853.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7942787 7943079 . - . gene_id "RvY_02853"; transcript_id "RvY_02853.1"; Scaffold001 rebuild exon 7945663 7945690 . - . gene_id "RvY_02853"; transcript_id "RvY_02853.1"; Scaffold001 rebuild transcript 7951150 7951629 . + . gene_id "RvY_02854"; transcript_id "RvY_02854.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7951150 7951185 . + . gene_id "RvY_02854"; transcript_id "RvY_02854.1"; Scaffold001 rebuild exon 7951276 7951629 . + . gene_id "RvY_02854"; transcript_id "RvY_02854.1"; Scaffold001 rebuild transcript 7957856 7958242 . + . gene_id "RvY_02855"; transcript_id "RvY_02855.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 7957856 7958242 . + . gene_id "RvY_02855"; transcript_id "RvY_02855.1"; Scaffold001 rebuild transcript 7957946 7958245 . + . gene_id "RvY_02855"; transcript_id "RvY_02855.2"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 7957946 7958245 . + . gene_id "RvY_02855"; transcript_id "RvY_02855.2"; Scaffold001 rebuild transcript 7958297 7958614 . + . gene_id "RvY_02856"; transcript_id "RvY_02856.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7958297 7958614 . + . gene_id "RvY_02856"; transcript_id "RvY_02856.1"; Scaffold001 rebuild transcript 7963667 7964523 . - . gene_id "RvY_02857"; transcript_id "RvY_02857.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7963667 7963810 . - . gene_id "RvY_02857"; transcript_id "RvY_02857.1"; Scaffold001 rebuild exon 7964476 7964523 . - . gene_id "RvY_02857"; transcript_id "RvY_02857.1"; Scaffold001 rebuild transcript 7964762 7965220 . + . gene_id "RvY_02858"; transcript_id "RvY_02858.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7964762 7965220 . + . gene_id "RvY_02858"; transcript_id "RvY_02858.1"; Scaffold001 rebuild transcript 7969518 7972779 . + . gene_id "RvY_02859"; transcript_id "RvY_02859.1"; annotation "hypothetical protein."; Pfam "[Helitron_like_N] Helitron helicase-like domain at N-terminus"; Scaffold001 rebuild exon 7969518 7969887 . + . gene_id "RvY_02859"; transcript_id "RvY_02859.1"; Scaffold001 rebuild exon 7972410 7972537 . + . gene_id "RvY_02859"; transcript_id "RvY_02859.1"; Scaffold001 rebuild exon 7972609 7972779 . + . gene_id "RvY_02859"; transcript_id "RvY_02859.1"; Scaffold001 rebuild transcript 7978797 7979160 . + . gene_id "RvY_02860"; transcript_id "RvY_02860.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7978797 7978914 . + . gene_id "RvY_02860"; transcript_id "RvY_02860.1"; Scaffold001 rebuild exon 7978988 7979160 . + . gene_id "RvY_02860"; transcript_id "RvY_02860.1"; Scaffold001 rebuild transcript 7979911 7980372 . + . gene_id "RvY_02861"; transcript_id "RvY_02861.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7979911 7980372 . + . gene_id "RvY_02861"; transcript_id "RvY_02861.1"; Scaffold001 rebuild transcript 7981551 7981859 . - . gene_id "RvY_02862"; transcript_id "RvY_02862.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7981551 7981859 . - . gene_id "RvY_02862"; transcript_id "RvY_02862.1"; Scaffold001 rebuild transcript 7981942 7984882 . + . gene_id "RvY_02863"; transcript_id "RvY_02863.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 7981942 7982052 . + . gene_id "RvY_02863"; transcript_id "RvY_02863.1"; Scaffold001 rebuild exon 7984042 7984195 . + . gene_id "RvY_02863"; transcript_id "RvY_02863.1"; Scaffold001 rebuild exon 7984626 7984882 . + . gene_id "RvY_02863"; transcript_id "RvY_02863.1"; Scaffold001 rebuild transcript 7984968 7985402 . + . gene_id "RvY_02864"; transcript_id "RvY_02864.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7984968 7985402 . + . gene_id "RvY_02864"; transcript_id "RvY_02864.1"; Scaffold001 rebuild transcript 7985019 7985414 . - . gene_id "RvY_02865"; transcript_id "RvY_02865.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7985019 7985414 . - . gene_id "RvY_02865"; transcript_id "RvY_02865.1"; Scaffold001 rebuild transcript 7989106 7990405 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7989106 7989324 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.1"; Scaffold001 rebuild exon 7989383 7990405 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.1"; Scaffold001 rebuild transcript 7989106 7990405 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7989106 7989324 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.2"; Scaffold001 rebuild exon 7989383 7989773 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.2"; Scaffold001 rebuild exon 7989867 7990405 . + . gene_id "RvY_02866"; transcript_id "RvY_02866.2"; Scaffold001 rebuild transcript 7997609 8000421 . - . gene_id "RvY_02867"; transcript_id "RvY_02867.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7997609 7997846 . - . gene_id "RvY_02867"; transcript_id "RvY_02867.1"; Scaffold001 rebuild exon 7999299 7999881 . - . gene_id "RvY_02867"; transcript_id "RvY_02867.1"; Scaffold001 rebuild exon 8000382 8000421 . - . gene_id "RvY_02867"; transcript_id "RvY_02867.1"; Scaffold001 rebuild transcript 7999154 7999963 . - . gene_id "RvY_02867"; transcript_id "RvY_02867.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 7999154 7999963 . - . gene_id "RvY_02867"; transcript_id "RvY_02867.2"; Scaffold001 rebuild transcript 8006182 8006801 . - . gene_id "RvY_02868"; transcript_id "RvY_02868.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8006182 8006444 . - . gene_id "RvY_02868"; transcript_id "RvY_02868.1"; Scaffold001 rebuild exon 8006768 8006801 . - . gene_id "RvY_02868"; transcript_id "RvY_02868.1"; Scaffold001 rebuild transcript 8006880 8007935 . + . gene_id "RvY_02869"; transcript_id "RvY_02869.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8006880 8007935 . + . gene_id "RvY_02869"; transcript_id "RvY_02869.1"; Scaffold001 rebuild transcript 8007408 8008374 . + . gene_id "RvY_02869"; transcript_id "RvY_02869.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8007408 8007726 . + . gene_id "RvY_02869"; transcript_id "RvY_02869.2"; Scaffold001 rebuild exon 8007827 8008374 . + . gene_id "RvY_02869"; transcript_id "RvY_02869.2"; Scaffold001 rebuild transcript 8008548 8009387 . + . gene_id "RvY_02870"; transcript_id "RvY_02870.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold001 rebuild exon 8008548 8009387 . + . gene_id "RvY_02870"; transcript_id "RvY_02870.1"; Scaffold001 rebuild transcript 8012795 8012965 . + . gene_id "RvY_02871"; transcript_id "RvY_02871.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8012795 8012965 . + . gene_id "RvY_02871"; transcript_id "RvY_02871.1"; Scaffold001 rebuild transcript 8013238 8017993 . - . gene_id "RvY_02872"; transcript_id "RvY_02872.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold001 rebuild exon 8013238 8014287 . - . gene_id "RvY_02872"; transcript_id "RvY_02872.1"; Scaffold001 rebuild exon 8017688 8017993 . - . gene_id "RvY_02872"; transcript_id "RvY_02872.1"; Scaffold001 rebuild transcript 8020637 8021120 . + . gene_id "RvY_02873"; transcript_id "RvY_02873.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8020637 8020639 . + . gene_id "RvY_02873"; transcript_id "RvY_02873.1"; Scaffold001 rebuild exon 8020732 8021028 . + . gene_id "RvY_02873"; transcript_id "RvY_02873.1"; Scaffold001 rebuild exon 8021097 8021120 . + . gene_id "RvY_02873"; transcript_id "RvY_02873.1"; Scaffold001 rebuild transcript 8022311 8026815 . + . gene_id "RvY_02874"; transcript_id "RvY_02874.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold001 rebuild exon 8022311 8022520 . + . gene_id "RvY_02874"; transcript_id "RvY_02874.1"; Scaffold001 rebuild exon 8025781 8026815 . + . gene_id "RvY_02874"; transcript_id "RvY_02874.1"; Scaffold001 rebuild transcript 8031425 8032298 . + . gene_id "RvY_02875"; transcript_id "RvY_02875.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8031425 8031474 . + . gene_id "RvY_02875"; transcript_id "RvY_02875.1"; Scaffold001 rebuild exon 8031801 8031924 . + . gene_id "RvY_02875"; transcript_id "RvY_02875.1"; Scaffold001 rebuild exon 8032002 8032298 . + . gene_id "RvY_02875"; transcript_id "RvY_02875.1"; Scaffold001 rebuild transcript 8032276 8032653 . + . gene_id "RvY_02875"; transcript_id "RvY_02875.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8032276 8032653 . + . gene_id "RvY_02875"; transcript_id "RvY_02875.2"; Scaffold001 rebuild transcript 8035425 8039053 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 8035425 8035755 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.1"; Scaffold001 rebuild exon 8038253 8038684 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.1"; Scaffold001 rebuild exon 8038749 8039053 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.1"; Scaffold001 rebuild transcript 8038249 8039053 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.2"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 8038249 8038684 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.2"; Scaffold001 rebuild exon 8038749 8039053 . - . gene_id "RvY_02876"; transcript_id "RvY_02876.2"; Scaffold001 rebuild transcript 8039814 8039957 . - . gene_id "RvY_02877"; transcript_id "RvY_02877.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8039814 8039957 . - . gene_id "RvY_02877"; transcript_id "RvY_02877.1"; Scaffold001 rebuild transcript 8041138 8041383 . - . gene_id "RvY_02878"; transcript_id "RvY_02878.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8041138 8041383 . - . gene_id "RvY_02878"; transcript_id "RvY_02878.1"; Scaffold001 rebuild transcript 8044641 8045343 . + . gene_id "RvY_02879"; transcript_id "RvY_02879.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8044641 8044999 . + . gene_id "RvY_02879"; transcript_id "RvY_02879.1"; Scaffold001 rebuild exon 8045103 8045343 . + . gene_id "RvY_02879"; transcript_id "RvY_02879.1"; Scaffold001 rebuild transcript 8047419 8052365 . + . gene_id "RvY_02880"; transcript_id "RvY_02880.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8047419 8047633 . + . gene_id "RvY_02880"; transcript_id "RvY_02880.1"; Scaffold001 rebuild exon 8051939 8052365 . + . gene_id "RvY_02880"; transcript_id "RvY_02880.1"; Scaffold001 rebuild transcript 8056001 8058624 . + . gene_id "RvY_02881"; transcript_id "RvY_02881.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8056001 8056023 . + . gene_id "RvY_02881"; transcript_id "RvY_02881.1"; Scaffold001 rebuild exon 8058354 8058624 . + . gene_id "RvY_02881"; transcript_id "RvY_02881.1"; Scaffold001 rebuild transcript 8058358 8058624 . + . gene_id "RvY_02881"; transcript_id "RvY_02881.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8058358 8058624 . + . gene_id "RvY_02881"; transcript_id "RvY_02881.2"; Scaffold001 rebuild transcript 8061018 8061590 . - . gene_id "RvY_02882"; transcript_id "RvY_02882.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8061018 8061204 . - . gene_id "RvY_02882"; transcript_id "RvY_02882.1"; Scaffold001 rebuild exon 8061496 8061590 . - . gene_id "RvY_02882"; transcript_id "RvY_02882.1"; Scaffold001 rebuild transcript 8065617 8065817 . - . gene_id "RvY_02883"; transcript_id "RvY_02883.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8065617 8065817 . - . gene_id "RvY_02883"; transcript_id "RvY_02883.1"; Scaffold001 rebuild transcript 8066141 8066679 . - . gene_id "RvY_02884"; transcript_id "RvY_02884.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8066141 8066278 . - . gene_id "RvY_02884"; transcript_id "RvY_02884.1"; Scaffold001 rebuild exon 8066341 8066679 . - . gene_id "RvY_02884"; transcript_id "RvY_02884.1"; Scaffold001 rebuild transcript 8067676 8071667 . + . gene_id "RvY_02885"; transcript_id "RvY_02885.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8067676 8067719 . + . gene_id "RvY_02885"; transcript_id "RvY_02885.1"; Scaffold001 rebuild exon 8067778 8068073 . + . gene_id "RvY_02885"; transcript_id "RvY_02885.1"; Scaffold001 rebuild exon 8069810 8070000 . + . gene_id "RvY_02885"; transcript_id "RvY_02885.1"; Scaffold001 rebuild exon 8070226 8070372 . + . gene_id "RvY_02885"; transcript_id "RvY_02885.1"; Scaffold001 rebuild exon 8071158 8071667 . + . gene_id "RvY_02885"; transcript_id "RvY_02885.1"; Scaffold001 rebuild transcript 8073227 8073742 . + . gene_id "RvY_02886"; transcript_id "RvY_02886.1"; annotation "hypothetical protein."; Pfam "[Helitron_like_N] Helitron helicase-like domain at N-terminus"; Scaffold001 rebuild exon 8073227 8073742 . + . gene_id "RvY_02886"; transcript_id "RvY_02886.1"; Scaffold001 rebuild transcript 8074218 8074589 . + . gene_id "RvY_02887"; transcript_id "RvY_02887.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8074218 8074589 . + . gene_id "RvY_02887"; transcript_id "RvY_02887.1"; Scaffold001 rebuild transcript 8074695 8075153 . + . gene_id "RvY_02888"; transcript_id "RvY_02888.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold001 rebuild exon 8074695 8075153 . + . gene_id "RvY_02888"; transcript_id "RvY_02888.1"; Scaffold001 rebuild transcript 8075312 8076062 . + . gene_id "RvY_02889"; transcript_id "RvY_02889.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold001 rebuild exon 8075312 8075777 . + . gene_id "RvY_02889"; transcript_id "RvY_02889.1"; Scaffold001 rebuild exon 8075872 8076062 . + . gene_id "RvY_02889"; transcript_id "RvY_02889.1"; Scaffold001 rebuild transcript 8077147 8077539 . + . gene_id "RvY_02890"; transcript_id "RvY_02890.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8077147 8077539 . + . gene_id "RvY_02890"; transcript_id "RvY_02890.1"; Scaffold001 rebuild transcript 8077613 8078356 . + . gene_id "RvY_02891"; transcript_id "RvY_02891.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8077613 8077729 . + . gene_id "RvY_02891"; transcript_id "RvY_02891.1"; Scaffold001 rebuild exon 8078039 8078356 . + . gene_id "RvY_02891"; transcript_id "RvY_02891.1"; Scaffold001 rebuild transcript 8079136 8080194 . + . gene_id "RvY_02892"; transcript_id "RvY_02892.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8079136 8080194 . + . gene_id "RvY_02892"; transcript_id "RvY_02892.1"; Scaffold001 rebuild transcript 8079136 8080862 . + . gene_id "RvY_02892"; transcript_id "RvY_02892.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8079136 8080173 . + . gene_id "RvY_02892"; transcript_id "RvY_02892.2"; Scaffold001 rebuild exon 8080857 8080862 . + . gene_id "RvY_02892"; transcript_id "RvY_02892.2"; Scaffold001 rebuild transcript 8081471 8082271 . + . gene_id "RvY_02893"; transcript_id "RvY_02893.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 8081471 8082271 . + . gene_id "RvY_02893"; transcript_id "RvY_02893.1"; Scaffold001 rebuild transcript 8085464 8085711 . - . gene_id "RvY_02894"; transcript_id "RvY_02894.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8085464 8085667 . - . gene_id "RvY_02894"; transcript_id "RvY_02894.1"; Scaffold001 rebuild exon 8085691 8085711 . - . gene_id "RvY_02894"; transcript_id "RvY_02894.1"; Scaffold001 rebuild transcript 8086709 8087704 . + . gene_id "RvY_02895"; transcript_id "RvY_02895.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold001 rebuild exon 8086709 8087704 . + . gene_id "RvY_02895"; transcript_id "RvY_02895.1"; Scaffold001 rebuild transcript 8091361 8092692 . - . gene_id "RvY_02896"; transcript_id "RvY_02896.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8091361 8092124 . - . gene_id "RvY_02896"; transcript_id "RvY_02896.1"; Scaffold001 rebuild exon 8092179 8092692 . - . gene_id "RvY_02896"; transcript_id "RvY_02896.1"; Scaffold001 rebuild transcript 8093230 8098218 . + . gene_id "RvY_02897"; transcript_id "RvY_02897.1"; annotation "putative Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1"; Pfam "[Fringe] Fringe-like"; EC "EC2.4.1.122"; similar_genes "C1GLT_DROME(e-value:5.9e-26;bit-score:115.0)"; Scaffold001 rebuild exon 8093230 8093401 . + . gene_id "RvY_02897"; transcript_id "RvY_02897.1"; Scaffold001 rebuild exon 8096422 8096665 . + . gene_id "RvY_02897"; transcript_id "RvY_02897.1"; Scaffold001 rebuild exon 8096739 8096896 . + . gene_id "RvY_02897"; transcript_id "RvY_02897.1"; Scaffold001 rebuild exon 8096952 8097190 . + . gene_id "RvY_02897"; transcript_id "RvY_02897.1"; Scaffold001 rebuild exon 8098069 8098218 . + . gene_id "RvY_02897"; transcript_id "RvY_02897.1"; Scaffold001 rebuild transcript 8100053 8101105 . + . gene_id "RvY_02898"; transcript_id "RvY_02898.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8100053 8100170 . + . gene_id "RvY_02898"; transcript_id "RvY_02898.1"; Scaffold001 rebuild exon 8100242 8100567 . + . gene_id "RvY_02898"; transcript_id "RvY_02898.1"; Scaffold001 rebuild exon 8100588 8100835 . + . gene_id "RvY_02898"; transcript_id "RvY_02898.1"; Scaffold001 rebuild exon 8100949 8101105 . + . gene_id "RvY_02898"; transcript_id "RvY_02898.1"; Scaffold001 rebuild transcript 8104940 8105083 . + . gene_id "RvY_02899"; transcript_id "RvY_02899.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8104940 8105083 . + . gene_id "RvY_02899"; transcript_id "RvY_02899.1"; Scaffold001 rebuild transcript 8108220 8109046 . - . gene_id "RvY_02900"; transcript_id "RvY_02900.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8108220 8108604 . - . gene_id "RvY_02900"; transcript_id "RvY_02900.1"; Scaffold001 rebuild exon 8108829 8109046 . - . gene_id "RvY_02900"; transcript_id "RvY_02900.1"; Scaffold001 rebuild transcript 8108666 8109046 . - . gene_id "RvY_02900"; transcript_id "RvY_02900.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8108666 8109046 . - . gene_id "RvY_02900"; transcript_id "RvY_02900.2"; Scaffold001 rebuild transcript 8124128 8124824 . - . gene_id "RvY_02901"; transcript_id "RvY_02901.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8124128 8124264 . - . gene_id "RvY_02901"; transcript_id "RvY_02901.1"; Scaffold001 rebuild exon 8124620 8124824 . - . gene_id "RvY_02901"; transcript_id "RvY_02901.1"; Scaffold001 rebuild transcript 8129138 8129332 . + . gene_id "RvY_02902"; transcript_id "RvY_02902.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8129138 8129332 . + . gene_id "RvY_02902"; transcript_id "RvY_02902.1"; Scaffold001 rebuild transcript 8130305 8130604 . - . gene_id "RvY_02903"; transcript_id "RvY_02903.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8130305 8130604 . - . gene_id "RvY_02903"; transcript_id "RvY_02903.1"; Scaffold001 rebuild transcript 8130351 8130824 . + . gene_id "RvY_02904"; transcript_id "RvY_02904.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8130351 8130824 . + . gene_id "RvY_02904"; transcript_id "RvY_02904.1"; Scaffold001 rebuild transcript 8130618 8130893 . - . gene_id "RvY_02905"; transcript_id "RvY_02905.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8130618 8130893 . - . gene_id "RvY_02905"; transcript_id "RvY_02905.1"; Scaffold001 rebuild transcript 8133341 8135806 . - . gene_id "RvY_02906"; transcript_id "RvY_02906.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8133341 8133449 . - . gene_id "RvY_02906"; transcript_id "RvY_02906.1"; Scaffold001 rebuild exon 8135157 8135261 . - . gene_id "RvY_02906"; transcript_id "RvY_02906.1"; Scaffold001 rebuild exon 8135542 8135606 . - . gene_id "RvY_02906"; transcript_id "RvY_02906.1"; Scaffold001 rebuild exon 8135717 8135806 . - . gene_id "RvY_02906"; transcript_id "RvY_02906.1"; Scaffold001 rebuild transcript 8140086 8140319 . + . gene_id "RvY_02907"; transcript_id "RvY_02907.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8140086 8140319 . + . gene_id "RvY_02907"; transcript_id "RvY_02907.1"; Scaffold001 rebuild transcript 8140569 8141275 . - . gene_id "RvY_02908"; transcript_id "RvY_02908.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8140569 8140959 . - . gene_id "RvY_02908"; transcript_id "RvY_02908.1"; Scaffold001 rebuild exon 8141196 8141275 . - . gene_id "RvY_02908"; transcript_id "RvY_02908.1"; Scaffold001 rebuild transcript 8141404 8142214 . - . gene_id "RvY_02909"; transcript_id "RvY_02909.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8141404 8141541 . - . gene_id "RvY_02909"; transcript_id "RvY_02909.1"; Scaffold001 rebuild exon 8142092 8142214 . - . gene_id "RvY_02909"; transcript_id "RvY_02909.1"; Scaffold001 rebuild transcript 8142611 8144254 . - . gene_id "RvY_02910"; transcript_id "RvY_02910.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8142611 8142886 . - . gene_id "RvY_02910"; transcript_id "RvY_02910.1"; Scaffold001 rebuild exon 8144129 8144254 . - . gene_id "RvY_02910"; transcript_id "RvY_02910.1"; Scaffold001 rebuild transcript 8144872 8146210 . - . gene_id "RvY_02911"; transcript_id "RvY_02911.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8144872 8145125 . - . gene_id "RvY_02911"; transcript_id "RvY_02911.1"; Scaffold001 rebuild exon 8145299 8145482 . - . gene_id "RvY_02911"; transcript_id "RvY_02911.1"; Scaffold001 rebuild exon 8145541 8145683 . - . gene_id "RvY_02911"; transcript_id "RvY_02911.1"; Scaffold001 rebuild exon 8146012 8146210 . - . gene_id "RvY_02911"; transcript_id "RvY_02911.1"; Scaffold001 rebuild transcript 8150016 8150588 . + . gene_id "RvY_02912"; transcript_id "RvY_02912.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8150016 8150588 . + . gene_id "RvY_02912"; transcript_id "RvY_02912.1"; Scaffold001 rebuild transcript 8150620 8151232 . + . gene_id "RvY_02913"; transcript_id "RvY_02913.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8150620 8150844 . + . gene_id "RvY_02913"; transcript_id "RvY_02913.1"; Scaffold001 rebuild exon 8151023 8151232 . + . gene_id "RvY_02913"; transcript_id "RvY_02913.1"; Scaffold001 rebuild transcript 8152004 8152201 . - . gene_id "RvY_02914"; transcript_id "RvY_02914.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8152004 8152201 . - . gene_id "RvY_02914"; transcript_id "RvY_02914.1"; Scaffold001 rebuild transcript 8152641 8153159 . - . gene_id "RvY_02915"; transcript_id "RvY_02915.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8152641 8153159 . - . gene_id "RvY_02915"; transcript_id "RvY_02915.1"; Scaffold001 rebuild transcript 8159022 8159294 . + . gene_id "RvY_02916"; transcript_id "RvY_02916.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8159022 8159294 . + . gene_id "RvY_02916"; transcript_id "RvY_02916.1"; Scaffold001 rebuild transcript 8159129 8159314 . - . gene_id "RvY_02917"; transcript_id "RvY_02917.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8159129 8159314 . - . gene_id "RvY_02917"; transcript_id "RvY_02917.1"; Scaffold001 rebuild transcript 8161425 8161655 . + . gene_id "RvY_02918"; transcript_id "RvY_02918.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8161425 8161655 . + . gene_id "RvY_02918"; transcript_id "RvY_02918.1"; Scaffold001 rebuild transcript 8164213 8164395 . + . gene_id "RvY_02919"; transcript_id "RvY_02919.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8164213 8164395 . + . gene_id "RvY_02919"; transcript_id "RvY_02919.1"; Scaffold001 rebuild transcript 8164504 8164674 . + . gene_id "RvY_02920"; transcript_id "RvY_02920.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8164504 8164674 . + . gene_id "RvY_02920"; transcript_id "RvY_02920.1"; Scaffold001 rebuild transcript 8164878 8165648 . + . gene_id "RvY_02921"; transcript_id "RvY_02921.1"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold001 rebuild exon 8164878 8165157 . + . gene_id "RvY_02921"; transcript_id "RvY_02921.1"; Scaffold001 rebuild exon 8165259 8165467 . + . gene_id "RvY_02921"; transcript_id "RvY_02921.1"; Scaffold001 rebuild exon 8165538 8165648 . + . gene_id "RvY_02921"; transcript_id "RvY_02921.1"; Scaffold001 rebuild transcript 8165822 8167064 . - . gene_id "RvY_02922"; transcript_id "RvY_02922.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 8165822 8166565 . - . gene_id "RvY_02922"; transcript_id "RvY_02922.1"; Scaffold001 rebuild exon 8166571 8166875 . - . gene_id "RvY_02922"; transcript_id "RvY_02922.1"; Scaffold001 rebuild exon 8166947 8167064 . - . gene_id "RvY_02922"; transcript_id "RvY_02922.1"; Scaffold001 rebuild transcript 8167467 8169455 . + . gene_id "RvY_02923"; transcript_id "RvY_02923.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold001 rebuild exon 8167467 8167469 . + . gene_id "RvY_02923"; transcript_id "RvY_02923.1"; Scaffold001 rebuild exon 8167538 8167748 . + . gene_id "RvY_02923"; transcript_id "RvY_02923.1"; Scaffold001 rebuild exon 8169021 8169271 . + . gene_id "RvY_02923"; transcript_id "RvY_02923.1"; Scaffold001 rebuild exon 8169336 8169455 . + . gene_id "RvY_02923"; transcript_id "RvY_02923.1"; Scaffold001 rebuild transcript 8170507 8170905 . + . gene_id "RvY_02924"; transcript_id "RvY_02924.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 8170507 8170720 . + . gene_id "RvY_02924"; transcript_id "RvY_02924.1"; Scaffold001 rebuild exon 8170826 8170905 . + . gene_id "RvY_02924"; transcript_id "RvY_02924.1"; Scaffold001 rebuild transcript 8172893 8175419 . - . gene_id "RvY_02925"; transcript_id "RvY_02925.1"; gene_name "GNPAT"; annotation "glyceronephosphate O-acyltransferase [EC:2.3.1.42]"; Pfam "[Acyltransferase]"; CDD "Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]"; EC "EC2.3.1.42"; KO "K00649"; similar_genes "GNPAT_RAT(e-value:2.8e-19;bit-score:93.0)"; Scaffold001 rebuild exon 8172893 8174091 . - . gene_id "RvY_02925"; transcript_id "RvY_02925.1"; Scaffold001 rebuild exon 8174151 8174323 . - . gene_id "RvY_02925"; transcript_id "RvY_02925.1"; Scaffold001 rebuild exon 8174677 8175419 . - . gene_id "RvY_02925"; transcript_id "RvY_02925.1"; Scaffold001 rebuild transcript 8176151 8178203 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; gene_name "hmgA"; annotation "Homogentisate 1,2-dioxygenase"; Pfam "[HgmA] homogentisate 1,2-dioxygenase"; CDD "homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria."; EC "EC1.13.11.5"; KO "K00451"; similar_genes "HGD_MOUSE(e-value:3.7e-72;bit-score:269.0)"; Scaffold001 rebuild exon 8176151 8176387 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild exon 8176629 8176884 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild exon 8176949 8177116 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild exon 8177185 8177303 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild exon 8177375 8177462 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild exon 8177543 8177739 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild exon 8177928 8178203 . + . gene_id "RvY_02926"; transcript_id "RvY_02926.1"; Scaffold001 rebuild transcript 8178473 8179487 . - . gene_id "RvY_02927"; transcript_id "RvY_02927.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8178473 8178680 . - . gene_id "RvY_02927"; transcript_id "RvY_02927.1"; Scaffold001 rebuild exon 8178757 8179487 . - . gene_id "RvY_02927"; transcript_id "RvY_02927.1"; Scaffold001 rebuild transcript 8179754 8180059 . + . gene_id "RvY_02928"; transcript_id "RvY_02928.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8179754 8180059 . + . gene_id "RvY_02928"; transcript_id "RvY_02928.1"; Scaffold001 rebuild transcript 8180153 8181785 . + . gene_id "RvY_02929"; transcript_id "RvY_02929.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8180153 8180988 . + . gene_id "RvY_02929"; transcript_id "RvY_02929.1"; Scaffold001 rebuild exon 8181440 8181785 . + . gene_id "RvY_02929"; transcript_id "RvY_02929.1"; Scaffold001 rebuild transcript 8182300 8183487 . - . gene_id "RvY_02930"; transcript_id "RvY_02930.1"; gene_name "RAB"; annotation "Ras-related protein Rab-6A"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07976"; similar_genes "RAB6A_HUMAN(e-value:3.2e-88;bit-score:322.0)"; Scaffold001 rebuild exon 8182300 8182431 . - . gene_id "RvY_02930"; transcript_id "RvY_02930.1"; Scaffold001 rebuild exon 8182871 8183076 . - . gene_id "RvY_02930"; transcript_id "RvY_02930.1"; Scaffold001 rebuild exon 8183139 8183357 . - . gene_id "RvY_02930"; transcript_id "RvY_02930.1"; Scaffold001 rebuild exon 8183418 8183487 . - . gene_id "RvY_02930"; transcript_id "RvY_02930.1"; Scaffold001 rebuild transcript 8183610 8184243 . - . gene_id "RvY_02931"; transcript_id "RvY_02931.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8183610 8183764 . - . gene_id "RvY_02931"; transcript_id "RvY_02931.1"; Scaffold001 rebuild exon 8183928 8184243 . - . gene_id "RvY_02931"; transcript_id "RvY_02931.1"; Scaffold001 rebuild transcript 8186655 8187989 . + . gene_id "RvY_02932"; transcript_id "RvY_02932.1"; annotation "hypothetical protein."; Pfam "[RPAP2_Rtr1] Rtr1/RPAP2 family"; Scaffold001 rebuild exon 8186655 8186746 . + . gene_id "RvY_02932"; transcript_id "RvY_02932.1"; Scaffold001 rebuild exon 8186811 8186925 . + . gene_id "RvY_02932"; transcript_id "RvY_02932.1"; Scaffold001 rebuild exon 8187090 8187284 . + . gene_id "RvY_02932"; transcript_id "RvY_02932.1"; Scaffold001 rebuild exon 8187466 8187593 . + . gene_id "RvY_02932"; transcript_id "RvY_02932.1"; Scaffold001 rebuild exon 8187872 8187989 . + . gene_id "RvY_02932"; transcript_id "RvY_02932.1"; Scaffold001 rebuild transcript 8188415 8192180 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 8188415 8188450 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild exon 8188673 8189051 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild exon 8189179 8189552 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild exon 8189656 8190140 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild exon 8190480 8190879 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild exon 8191046 8191339 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild exon 8191599 8192180 . + . gene_id "RvY_02933"; transcript_id "RvY_02933.1"; Scaffold001 rebuild transcript 8192820 8195729 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; gene_name "tgt"; annotation "putative Queuine tRNA-ribosyltransferase"; Pfam "[TGT] Queuine tRNA-ribosyltransferase"; CDD "queuine tRNA-ribosyltransferase; Provisional"; EC "EC2.4.2.29"; KO "K00773"; similar_genes "TGT_DANRE(e-value:3.8e-40;bit-score:162.0)"; Scaffold001 rebuild exon 8192820 8193068 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8193147 8193215 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8193465 8193793 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8193855 8193924 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8194010 8194055 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8194284 8194498 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8194687 8194881 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild exon 8195490 8195729 . + . gene_id "RvY_02934"; transcript_id "RvY_02934.1"; Scaffold001 rebuild transcript 8197059 8197292 . - . gene_id "RvY_02935"; transcript_id "RvY_02935.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8197059 8197292 . - . gene_id "RvY_02935"; transcript_id "RvY_02935.1"; Scaffold001 rebuild transcript 8197294 8202305 . + . gene_id "RvY_02936"; transcript_id "RvY_02936.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 8197294 8197335 . + . gene_id "RvY_02936"; transcript_id "RvY_02936.1"; Scaffold001 rebuild exon 8199125 8200325 . + . gene_id "RvY_02936"; transcript_id "RvY_02936.1"; Scaffold001 rebuild exon 8200651 8201095 . + . gene_id "RvY_02936"; transcript_id "RvY_02936.1"; Scaffold001 rebuild exon 8201372 8201658 . + . gene_id "RvY_02936"; transcript_id "RvY_02936.1"; Scaffold001 rebuild exon 8201866 8202305 . + . gene_id "RvY_02936"; transcript_id "RvY_02936.1"; Scaffold001 rebuild transcript 8197721 8197993 . - . gene_id "RvY_02937"; transcript_id "RvY_02937.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8197721 8197993 . - . gene_id "RvY_02937"; transcript_id "RvY_02937.1"; Scaffold001 rebuild transcript 8203510 8205245 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; gene_name "(1)CBS_pair_5(2)CBS_pair_28"; annotation "hypothetical protein."; Pfam "[CBS]"; CDD "The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase)."; similar_genes "(1)AAKG1_RAT(e-value:1.3e-19;bit-score:94.0)(2)AAKG2_MOUSE(e-value:1.2e-07;bit-score:55.0)"; Scaffold001 rebuild exon 8203510 8203626 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8203706 8203832 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8204039 8204139 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8204214 8204272 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8204336 8204383 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8204455 8204592 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8204870 8204924 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild exon 8205006 8205245 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.1"; Scaffold001 rebuild transcript 8202629 8203532 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.2"; gene_name "(1)CBS_pair_5(2)CBS_pair_28"; annotation "hypothetical protein."; Pfam "[CBS]"; CDD "The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase)."; similar_genes "(1)AAKG1_RAT(e-value:1.3e-19;bit-score:94.0)(2)AAKG2_MOUSE(e-value:1.2e-07;bit-score:55.0)"; Scaffold001 rebuild exon 8202629 8202820 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.2"; Scaffold001 rebuild exon 8202893 8202967 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.2"; Scaffold001 rebuild exon 8203043 8203120 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.2"; Scaffold001 rebuild exon 8203324 8203446 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.2"; Scaffold001 rebuild exon 8203506 8203532 . - . gene_id "RvY_02938"; transcript_id "RvY_02938.2"; Scaffold001 rebuild transcript 8205831 8209538 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; gene_name "CBX1"; annotation "chromobox protein 1"; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; KO "K11585"; Scaffold001 rebuild exon 8205831 8205924 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8205991 8206197 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8206524 8206691 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8206756 8206848 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8206920 8207135 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8207899 8208347 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8208530 8208797 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8209065 8209372 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8209432 8209470 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild exon 8209530 8209538 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.1"; Scaffold001 rebuild transcript 8205831 8209538 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; gene_name "CBX1"; annotation "chromobox protein 1"; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; KO "K11585"; Scaffold001 rebuild exon 8205831 8205924 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8205991 8206197 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8206524 8206691 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8206756 8206848 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8206920 8207135 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8207917 8208347 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8208530 8208797 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8209065 8209372 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8209432 8209470 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild exon 8209530 8209538 . + . gene_id "RvY_02939"; transcript_id "RvY_02939.2"; Scaffold001 rebuild transcript 8210286 8211567 . + . gene_id "RvY_02940"; transcript_id "RvY_02940.1"; annotation "hypothetical protein."; Pfam "[Motile_Sperm] MSP (Major sperm protein) domain"; similar_genes "MSPD1_BOVIN(e-value:2.1e-17;bit-score:87.0)"; Scaffold001 rebuild exon 8210286 8210466 . + . gene_id "RvY_02940"; transcript_id "RvY_02940.1"; Scaffold001 rebuild exon 8210531 8210606 . + . gene_id "RvY_02940"; transcript_id "RvY_02940.1"; Scaffold001 rebuild exon 8210693 8211006 . + . gene_id "RvY_02940"; transcript_id "RvY_02940.1"; Scaffold001 rebuild exon 8211306 8211461 . + . gene_id "RvY_02940"; transcript_id "RvY_02940.1"; Scaffold001 rebuild exon 8211536 8211567 . + . gene_id "RvY_02940"; transcript_id "RvY_02940.1"; Scaffold001 rebuild transcript 8212149 8220204 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; gene_name "(1)DLG1(2)L27_1"; annotation "(1)Disks large homolog 3(2)putative Disks large homolog 3"; Pfam "[PDZ_2] PDZ domain|[Guanylate_kin] Guanylate kinase|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[L27_1]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "(1)Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.(2)L27_1. The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices."; KO "(1)K12076"; similar_genes "(1)DLG3_MOUSE(e-value:3.7e-72;bit-score:269.0)(2)DLG3_MOUSE(e-value:9.5e-35;bit-score:145.0)"; Scaffold001 rebuild exon 8212149 8212457 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8212809 8212951 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8213053 8213232 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8213399 8213601 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8213673 8213849 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8214262 8214364 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8216092 8216158 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8216262 8216314 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8216427 8216566 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8216856 8217244 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8217802 8217938 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8218316 8218475 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8218537 8218662 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8218788 8218922 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8219165 8219508 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8219675 8219806 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild exon 8220177 8220204 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.1"; Scaffold001 rebuild transcript 8213036 8220204 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; gene_name "(1)DLG1(2)L27_1"; annotation "(1)Disks large homolog 3(2)putative Disks large homolog 3"; Pfam "[PDZ_2] PDZ domain|[Guanylate_kin] Guanylate kinase|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[L27_1]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "(1)Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.(2)L27_1. The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices."; KO "(1)K12076"; similar_genes "(1)DLG3_MOUSE(e-value:3.7e-72;bit-score:269.0)(2)DLG3_MOUSE(e-value:9.5e-35;bit-score:145.0)"; Scaffold001 rebuild exon 8213036 8213232 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8213399 8213601 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8213673 8213849 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8214262 8214364 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8216092 8216158 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8216262 8216314 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8216427 8216566 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8216856 8217244 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8217802 8217938 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8218316 8218475 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8218537 8218662 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8218788 8218922 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8219165 8219508 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8219675 8219806 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild exon 8220177 8220204 . - . gene_id "RvY_02941"; transcript_id "RvY_02941.2"; Scaffold001 rebuild transcript 8221019 8221771 . - . gene_id "RvY_02942"; transcript_id "RvY_02942.1"; gene_name "PPP3R"; annotation "Calcineurin subunit B type 2"; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand_3] Cytoskeletal-regulatory complex EF hand|[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; KO "K06268"; similar_genes "CANB2_DROME(e-value:4.7e-83;bit-score:305.0)"; Scaffold001 rebuild exon 8221019 8221095 . - . gene_id "RvY_02942"; transcript_id "RvY_02942.1"; Scaffold001 rebuild exon 8221336 8221771 . - . gene_id "RvY_02942"; transcript_id "RvY_02942.1"; Scaffold001 rebuild transcript 8224213 8228319 . + . gene_id "RvY_02943"; transcript_id "RvY_02943.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8224213 8224324 . + . gene_id "RvY_02943"; transcript_id "RvY_02943.1"; Scaffold001 rebuild exon 8224510 8224589 . + . gene_id "RvY_02943"; transcript_id "RvY_02943.1"; Scaffold001 rebuild exon 8226080 8226666 . + . gene_id "RvY_02943"; transcript_id "RvY_02943.1"; Scaffold001 rebuild exon 8228016 8228319 . + . gene_id "RvY_02943"; transcript_id "RvY_02943.1"; Scaffold001 rebuild transcript 8230052 8233548 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 8230052 8230111 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8230202 8230306 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8230375 8230563 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8230647 8230784 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8231037 8231058 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8231446 8231549 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8231848 8231897 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8231961 8232089 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8232187 8232427 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8232480 8232587 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8232871 8233005 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8233125 8233188 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild exon 8233253 8233548 . + . gene_id "RvY_02944"; transcript_id "RvY_02944.1"; Scaffold001 rebuild transcript 8233884 8234615 . - . gene_id "RvY_02945"; transcript_id "RvY_02945.1"; gene_name "Ras"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; Scaffold001 rebuild exon 8233884 8234615 . - . gene_id "RvY_02945"; transcript_id "RvY_02945.1"; Scaffold001 rebuild transcript 8236061 8236306 . + . gene_id "RvY_02946"; transcript_id "RvY_02946.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8236061 8236306 . + . gene_id "RvY_02946"; transcript_id "RvY_02946.1"; Scaffold001 rebuild transcript 8238654 8238944 . - . gene_id "RvY_02947"; transcript_id "RvY_02947.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8238654 8238944 . - . gene_id "RvY_02947"; transcript_id "RvY_02947.1"; Scaffold001 rebuild transcript 8239473 8240093 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8239473 8239667 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.1"; Scaffold001 rebuild exon 8239730 8239884 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.1"; Scaffold001 rebuild exon 8240021 8240093 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.1"; Scaffold001 rebuild transcript 8239094 8239585 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8239094 8239129 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.2"; Scaffold001 rebuild exon 8239191 8239274 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.2"; Scaffold001 rebuild exon 8239340 8239585 . - . gene_id "RvY_02948"; transcript_id "RvY_02948.2"; Scaffold001 rebuild transcript 8241862 8242341 . + . gene_id "RvY_02949"; transcript_id "RvY_02949.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 8241862 8242120 . + . gene_id "RvY_02949"; transcript_id "RvY_02949.1"; Scaffold001 rebuild exon 8242220 8242341 . + . gene_id "RvY_02949"; transcript_id "RvY_02949.1"; Scaffold001 rebuild transcript 8244437 8247065 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; annotation "Protein GPR89"; Pfam "[DUF3735]|[ABA_GPCR] Abscisic acid G-protein coupled receptor"; similar_genes "GPR89_MOUSE(e-value:1.0e-63;bit-score:241.0)"; Scaffold001 rebuild exon 8244437 8244581 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8244669 8244802 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8244870 8244959 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8245035 8245130 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8245218 8245402 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8245484 8245590 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8245695 8245775 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8245922 8246045 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8246137 8246256 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8246327 8246433 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8246502 8246605 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8246829 8246888 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild exon 8247024 8247065 . - . gene_id "RvY_02950"; transcript_id "RvY_02950.1"; Scaffold001 rebuild transcript 8247071 8247574 . + . gene_id "RvY_02951"; transcript_id "RvY_02951.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8247071 8247574 . + . gene_id "RvY_02951"; transcript_id "RvY_02951.1"; Scaffold001 rebuild transcript 8247692 8248455 . + . gene_id "RvY_02952"; transcript_id "RvY_02952.1"; gene_name "Ribosomal_L37"; annotation "hypothetical protein."; Pfam "[Ribosomal_L37] Mitochondrial ribosomal protein L37"; CDD "Mitochondrial ribosomal protein L37. This family includes yeast MRPL37 a mitochondrial ribosomal protein."; Scaffold001 rebuild exon 8247692 8247905 . + . gene_id "RvY_02952"; transcript_id "RvY_02952.1"; Scaffold001 rebuild exon 8248139 8248455 . + . gene_id "RvY_02952"; transcript_id "RvY_02952.1"; Scaffold001 rebuild transcript 8248755 8251210 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; annotation "hypothetical protein."; Pfam "[MRP-S27] Mitochondrial 28S ribosomal protein S27"; Scaffold001 rebuild exon 8248755 8249186 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8249302 8249465 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8249538 8249781 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8250003 8250166 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8250445 8250638 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8250725 8250783 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8250838 8250908 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8250981 8251076 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild exon 8251141 8251210 . - . gene_id "RvY_02953"; transcript_id "RvY_02953.1"; Scaffold001 rebuild transcript 8250815 8251182 . + . gene_id "RvY_02954"; transcript_id "RvY_02954.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8250815 8250828 . + . gene_id "RvY_02954"; transcript_id "RvY_02954.1"; Scaffold001 rebuild exon 8250972 8251182 . + . gene_id "RvY_02954"; transcript_id "RvY_02954.1"; Scaffold001 rebuild transcript 8251396 8252085 . + . gene_id "RvY_02955"; transcript_id "RvY_02955.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8251396 8252085 . + . gene_id "RvY_02955"; transcript_id "RvY_02955.1"; Scaffold001 rebuild transcript 8252954 8253509 . + . gene_id "RvY_02956"; transcript_id "RvY_02956.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8252954 8253071 . + . gene_id "RvY_02956"; transcript_id "RvY_02956.1"; Scaffold001 rebuild exon 8253145 8253509 . + . gene_id "RvY_02956"; transcript_id "RvY_02956.1"; Scaffold001 rebuild transcript 8254268 8254762 . + . gene_id "RvY_02957"; transcript_id "RvY_02957.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8254268 8254762 . + . gene_id "RvY_02957"; transcript_id "RvY_02957.1"; Scaffold001 rebuild transcript 8255372 8256347 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; annotation "hypothetical protein."; Pfam "[Cornichon] Cornichon protein"; similar_genes "CNIH_MOUSE(e-value:5.7e-22;bit-score:102.0)"; Scaffold001 rebuild exon 8255372 8255452 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; Scaffold001 rebuild exon 8255522 8255545 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; Scaffold001 rebuild exon 8255789 8255833 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; Scaffold001 rebuild exon 8255898 8256010 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; Scaffold001 rebuild exon 8256084 8256227 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; Scaffold001 rebuild exon 8256314 8256347 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.1"; Scaffold001 rebuild transcript 8255372 8256231 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.2"; annotation "hypothetical protein."; Pfam "[Cornichon] Cornichon protein"; similar_genes "CNIH_MOUSE(e-value:5.7e-22;bit-score:102.0)"; Scaffold001 rebuild exon 8255372 8255452 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.2"; Scaffold001 rebuild exon 8255522 8255545 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.2"; Scaffold001 rebuild exon 8255789 8255833 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.2"; Scaffold001 rebuild exon 8255898 8256010 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.2"; Scaffold001 rebuild exon 8256084 8256231 . + . gene_id "RvY_02958"; transcript_id "RvY_02958.2"; Scaffold001 rebuild transcript 8256723 8257265 . - . gene_id "RvY_02959"; transcript_id "RvY_02959.1"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold001 rebuild exon 8256723 8257265 . - . gene_id "RvY_02959"; transcript_id "RvY_02959.1"; Scaffold001 rebuild transcript 8258463 8258868 . + . gene_id "RvY_02960"; transcript_id "RvY_02960.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8258463 8258523 . + . gene_id "RvY_02960"; transcript_id "RvY_02960.1"; Scaffold001 rebuild exon 8258579 8258868 . + . gene_id "RvY_02960"; transcript_id "RvY_02960.1"; Scaffold001 rebuild transcript 8259613 8260386 . + . gene_id "RvY_02961"; transcript_id "RvY_02961.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8259613 8260002 . + . gene_id "RvY_02961"; transcript_id "RvY_02961.1"; Scaffold001 rebuild exon 8260216 8260386 . + . gene_id "RvY_02961"; transcript_id "RvY_02961.1"; Scaffold001 rebuild transcript 8263994 8264352 . - . gene_id "RvY_02962"; transcript_id "RvY_02962.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8263994 8264154 . - . gene_id "RvY_02962"; transcript_id "RvY_02962.1"; Scaffold001 rebuild exon 8264217 8264352 . - . gene_id "RvY_02962"; transcript_id "RvY_02962.1"; Scaffold001 rebuild transcript 8264374 8266187 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8264374 8264486 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8264716 8264820 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8264891 8264956 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8265036 8265192 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8265251 8265435 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8265455 8265554 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8265689 8265960 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild exon 8266049 8266187 . - . gene_id "RvY_02963"; transcript_id "RvY_02963.1"; Scaffold001 rebuild transcript 8266420 8267283 . + . gene_id "RvY_02964"; transcript_id "RvY_02964.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8266420 8267041 . + . gene_id "RvY_02964"; transcript_id "RvY_02964.1"; Scaffold001 rebuild exon 8267252 8267283 . + . gene_id "RvY_02964"; transcript_id "RvY_02964.1"; Scaffold001 rebuild transcript 8267299 8267472 . - . gene_id "RvY_02965"; transcript_id "RvY_02965.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8267299 8267472 . - . gene_id "RvY_02965"; transcript_id "RvY_02965.1"; Scaffold001 rebuild transcript 8271381 8272091 . - . gene_id "RvY_02966"; transcript_id "RvY_02966.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold001 rebuild exon 8271381 8271801 . - . gene_id "RvY_02966"; transcript_id "RvY_02966.1"; Scaffold001 rebuild exon 8271877 8272091 . - . gene_id "RvY_02966"; transcript_id "RvY_02966.1"; Scaffold001 rebuild transcript 8274685 8276690 . - . gene_id "RvY_02967"; transcript_id "RvY_02967.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 8274685 8275068 . - . gene_id "RvY_02967"; transcript_id "RvY_02967.1"; Scaffold001 rebuild exon 8276655 8276690 . - . gene_id "RvY_02967"; transcript_id "RvY_02967.1"; Scaffold001 rebuild transcript 8276977 8277243 . + . gene_id "RvY_02968"; transcript_id "RvY_02968.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8276977 8277243 . + . gene_id "RvY_02968"; transcript_id "RvY_02968.1"; Scaffold001 rebuild transcript 8278109 8279945 . - . gene_id "RvY_02969"; transcript_id "RvY_02969.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8278109 8278216 . - . gene_id "RvY_02969"; transcript_id "RvY_02969.1"; Scaffold001 rebuild exon 8279297 8279508 . - . gene_id "RvY_02969"; transcript_id "RvY_02969.1"; Scaffold001 rebuild exon 8279657 8279945 . - . gene_id "RvY_02969"; transcript_id "RvY_02969.1"; Scaffold001 rebuild transcript 8279964 8280161 . - . gene_id "RvY_02970"; transcript_id "RvY_02970.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8279964 8280161 . - . gene_id "RvY_02970"; transcript_id "RvY_02970.1"; Scaffold001 rebuild transcript 8281233 8281620 . - . gene_id "RvY_02971"; transcript_id "RvY_02971.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8281233 8281307 . - . gene_id "RvY_02971"; transcript_id "RvY_02971.1"; Scaffold001 rebuild exon 8281555 8281620 . - . gene_id "RvY_02971"; transcript_id "RvY_02971.1"; Scaffold001 rebuild transcript 8285322 8285542 . + . gene_id "RvY_02972"; transcript_id "RvY_02972.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8285322 8285359 . + . gene_id "RvY_02972"; transcript_id "RvY_02972.1"; Scaffold001 rebuild exon 8285437 8285542 . + . gene_id "RvY_02972"; transcript_id "RvY_02972.1"; Scaffold001 rebuild transcript 8285713 8293402 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; product "Rad50"; gene_name "RAD50"; annotation "Rad50 | putative DNA repair protein RAD50"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_23] AAA domain|[AAA_13] AAA domain|[SbcCD_C] Putative exonuclease SbcCD, C subunit|[AAA_21] AAA domain"; CDD "rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.-.-"; KO "K10866"; similar_genes "RAD50_MOUSE(e-value:6.8e-27;bit-score:118.0)"; Scaffold001 rebuild exon 8285713 8285758 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8285826 8285972 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8286056 8286189 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8286510 8286572 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8286650 8286786 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8286854 8286938 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8287301 8287426 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8287538 8287711 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8287938 8288085 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8288152 8288291 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8288493 8288779 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8289028 8289385 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8289708 8290126 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8290237 8290503 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8290641 8290934 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8291183 8291354 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8291424 8291578 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8291658 8291808 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8291879 8291947 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8292016 8292061 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8292129 8292188 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8292282 8292355 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8292436 8292540 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8292632 8292745 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8292831 8292917 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild exon 8293151 8293402 . - . gene_id "RvY_02973"; transcript_id "RvY_02973.1"; Scaffold001 rebuild transcript 8293727 8294212 . + . gene_id "RvY_02974"; transcript_id "RvY_02974.1"; annotation "hypothetical protein."; Pfam "[FOP_dimer] FOP N terminal dimerisation domain"; Scaffold001 rebuild exon 8293727 8294212 . + . gene_id "RvY_02974"; transcript_id "RvY_02974.1"; Scaffold001 rebuild transcript 8293975 8294469 . - . gene_id "RvY_02975"; transcript_id "RvY_02975.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8293975 8294469 . - . gene_id "RvY_02975"; transcript_id "RvY_02975.1"; Scaffold001 rebuild transcript 8296336 8297985 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; gene_name "K03434"; annotation "N-acetylglucosaminylphosphatidylinositol deacetylase [EC:3.5.1.89]"; Pfam "[PIG-L] GlcNAc-PI de-N-acetylase"; EC "EC3.5.1.89"; KO "K03434"; Scaffold001 rebuild exon 8296336 8296476 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; Scaffold001 rebuild exon 8296607 8296740 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; Scaffold001 rebuild exon 8297096 8297198 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; Scaffold001 rebuild exon 8297296 8297386 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; Scaffold001 rebuild exon 8297596 8297695 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; Scaffold001 rebuild exon 8297760 8297985 . - . gene_id "RvY_02976"; transcript_id "RvY_02976.1"; Scaffold001 rebuild transcript 8300415 8301310 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; gene_name "cutA"; annotation "putative Protein CutA homolog"; Pfam "[CutA1] CutA1 divalent ion tolerance protein"; CDD "CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila)."; KO "K03926"; similar_genes "CUTA_XENLA(e-value:4.6e-30;bit-score:129.0)"; Scaffold001 rebuild exon 8300415 8300462 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; Scaffold001 rebuild exon 8300556 8300752 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; Scaffold001 rebuild exon 8300808 8300880 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; Scaffold001 rebuild exon 8300950 8300982 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; Scaffold001 rebuild exon 8301051 8301143 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; Scaffold001 rebuild exon 8301239 8301310 . + . gene_id "RvY_02977"; transcript_id "RvY_02977.1"; Scaffold001 rebuild transcript 8300517 8300867 . - . gene_id "RvY_02978"; transcript_id "RvY_02978.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8300517 8300867 . - . gene_id "RvY_02978"; transcript_id "RvY_02978.1"; Scaffold001 rebuild transcript 8301764 8302399 . - . gene_id "RvY_02979"; transcript_id "RvY_02979.1"; annotation "hypothetical protein."; Pfam "[PPI_Ypi1] Protein phosphatase inhibitor"; similar_genes "PP1RB_HUMAN(e-value:2.0e-09;bit-score:60.0)"; Scaffold001 rebuild exon 8301764 8301951 . - . gene_id "RvY_02979"; transcript_id "RvY_02979.1"; Scaffold001 rebuild exon 8302115 8302223 . - . gene_id "RvY_02979"; transcript_id "RvY_02979.1"; Scaffold001 rebuild exon 8302307 8302399 . - . gene_id "RvY_02979"; transcript_id "RvY_02979.1"; Scaffold001 rebuild transcript 8302922 8305365 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; gene_name "LMAN2"; annotation "lectin, mannose-binding 2"; Pfam "[Lectin_leg-like] Legume-like lectin family"; CDD "Legume-like lectin family. Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins. The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, our alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin. Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway."; KO "K10082"; similar_genes "LMAN2_MOUSE(e-value:4.7e-15;bit-score:79.0)"; Scaffold001 rebuild exon 8302922 8303066 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8303334 8303449 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8303751 8303865 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8303949 8304003 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8304082 8304109 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8304190 8304286 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8304364 8304428 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8304506 8304620 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8304715 8304770 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8304834 8304894 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild exon 8305199 8305365 . + . gene_id "RvY_02980"; transcript_id "RvY_02980.1"; Scaffold001 rebuild transcript 8305861 8307391 . + . gene_id "RvY_02981"; transcript_id "RvY_02981.1"; gene_name "PTZ00146"; annotation "hypothetical protein."; CDD "fibrillarin; Provisional"; similar_genes "GRP1_PHAVU(e-value:3.3e-20;bit-score:96.0)"; Scaffold001 rebuild exon 8305861 8305863 . + . gene_id "RvY_02981"; transcript_id "RvY_02981.1"; Scaffold001 rebuild exon 8306142 8306927 . + . gene_id "RvY_02981"; transcript_id "RvY_02981.1"; Scaffold001 rebuild exon 8307009 8307059 . + . gene_id "RvY_02981"; transcript_id "RvY_02981.1"; Scaffold001 rebuild exon 8307137 8307235 . + . gene_id "RvY_02981"; transcript_id "RvY_02981.1"; Scaffold001 rebuild exon 8307347 8307391 . + . gene_id "RvY_02981"; transcript_id "RvY_02981.1"; Scaffold001 rebuild transcript 8307869 8309219 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8307869 8308443 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.1"; Scaffold001 rebuild exon 8308734 8308923 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.1"; Scaffold001 rebuild exon 8309007 8309069 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.1"; Scaffold001 rebuild exon 8309148 8309219 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.1"; Scaffold001 rebuild transcript 8307869 8308974 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8307869 8308443 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.2"; Scaffold001 rebuild exon 8308734 8308974 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.2"; Scaffold001 rebuild transcript 8308371 8309407 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8308371 8308443 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.3"; Scaffold001 rebuild exon 8308734 8309069 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.3"; Scaffold001 rebuild exon 8309148 8309407 . + . gene_id "RvY_02982"; transcript_id "RvY_02982.3"; Scaffold001 rebuild transcript 8309945 8311564 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; gene_name "THOC4"; annotation "THO complex subunit 4"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[FoP_duplication] C-terminal duplication domain of Friend of PRMT1|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 8309945 8310139 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; Scaffold001 rebuild exon 8310255 8310425 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; Scaffold001 rebuild exon 8310811 8310958 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; Scaffold001 rebuild exon 8311024 8311189 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; Scaffold001 rebuild exon 8311326 8311483 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; Scaffold001 rebuild exon 8311563 8311564 . + . gene_id "RvY_02983"; transcript_id "RvY_02983.1"; Scaffold001 rebuild transcript 8312295 8313388 . + . gene_id "RvY_02984"; transcript_id "RvY_02984.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8312295 8312451 . + . gene_id "RvY_02984"; transcript_id "RvY_02984.1"; Scaffold001 rebuild exon 8312717 8312860 . + . gene_id "RvY_02984"; transcript_id "RvY_02984.1"; Scaffold001 rebuild exon 8312935 8313078 . + . gene_id "RvY_02984"; transcript_id "RvY_02984.1"; Scaffold001 rebuild exon 8313279 8313388 . + . gene_id "RvY_02984"; transcript_id "RvY_02984.1"; Scaffold001 rebuild transcript 8314085 8314878 . - . gene_id "RvY_02985"; transcript_id "RvY_02985.1"; gene_name "ATPeFG"; annotation "F-type H+-transporting ATPase subunit g [EC:3.6.3.14]"; Pfam "[ATP-synt_G] Mitochondrial ATP synthase g subunit"; EC "EC3.6.3.14"; KO "K02140"; Scaffold001 rebuild exon 8314085 8314204 . - . gene_id "RvY_02985"; transcript_id "RvY_02985.1"; Scaffold001 rebuild exon 8314592 8314752 . - . gene_id "RvY_02985"; transcript_id "RvY_02985.1"; Scaffold001 rebuild exon 8314839 8314878 . - . gene_id "RvY_02985"; transcript_id "RvY_02985.1"; Scaffold001 rebuild transcript 8315440 8316918 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.1"; annotation "(1)putative 39S ribosomal protein L16, mitochondrial(2)hypothetical protein."; Pfam "[Ribosomal_L16] Ribosomal protein L16p/L10e"; similar_genes "(1)RM16_RAT(e-value:1.4e-29;bit-score:127.0)"; Scaffold001 rebuild exon 8315440 8315473 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.1"; Scaffold001 rebuild exon 8315533 8315631 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.1"; Scaffold001 rebuild exon 8315738 8315910 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.1"; Scaffold001 rebuild exon 8316192 8316455 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.1"; Scaffold001 rebuild exon 8316724 8316918 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.1"; Scaffold001 rebuild transcript 8314819 8315592 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.2"; annotation "(1)putative 39S ribosomal protein L16, mitochondrial(2)hypothetical protein."; Pfam "[Ribosomal_L16] Ribosomal protein L16p/L10e"; similar_genes "(1)RM16_RAT(e-value:1.4e-29;bit-score:127.0)"; Scaffold001 rebuild exon 8314819 8315088 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.2"; Scaffold001 rebuild exon 8315339 8315473 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.2"; Scaffold001 rebuild exon 8315533 8315592 . + . gene_id "RvY_02986"; transcript_id "RvY_02986.2"; Scaffold001 rebuild transcript 8317096 8319047 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; gene_name "PIGK"; annotation "GPI-anchor transamidase"; Pfam "[Peptidase_C13] Peptidase C13 family"; CDD "Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]"; EC "EC2.6.-.-|EC3.-.-.-"; KO "K05290"; similar_genes "GPI8_PONAB(e-value:1.8e-101;bit-score:366.0)"; Scaffold001 rebuild exon 8317096 8317168 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8317244 8317419 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8317488 8317598 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8317781 8317995 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8318231 8318342 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8318423 8318499 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8318583 8318844 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild exon 8318988 8319047 . - . gene_id "RvY_02987"; transcript_id "RvY_02987.1"; Scaffold001 rebuild transcript 8319666 8321243 . + . gene_id "RvY_02988"; transcript_id "RvY_02988.1"; annotation "hypothetical protein."; KO "K14523"; Scaffold001 rebuild exon 8319666 8319820 . + . gene_id "RvY_02988"; transcript_id "RvY_02988.1"; Scaffold001 rebuild exon 8319970 8320020 . + . gene_id "RvY_02988"; transcript_id "RvY_02988.1"; Scaffold001 rebuild exon 8320195 8320320 . + . gene_id "RvY_02988"; transcript_id "RvY_02988.1"; Scaffold001 rebuild exon 8320403 8320631 . + . gene_id "RvY_02988"; transcript_id "RvY_02988.1"; Scaffold001 rebuild exon 8320878 8321243 . + . gene_id "RvY_02988"; transcript_id "RvY_02988.1"; Scaffold001 rebuild transcript 8321589 8323775 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; gene_name "rfbB"; annotation "UDP-glucuronic acid decarboxylase 1"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; CDD "Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]"; EC "EC4.1.1.35|EC4.2.1.46"; KO "K01710"; similar_genes "UXS1_RAT(e-value:3.0e-129;bit-score:458.0)"; Scaffold001 rebuild exon 8321589 8321696 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8321967 8322233 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8322326 8322547 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8322602 8322786 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8323086 8323266 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8323327 8323456 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8323597 8323639 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild exon 8323709 8323775 . - . gene_id "RvY_02989"; transcript_id "RvY_02989.1"; Scaffold001 rebuild transcript 8324173 8325196 . + . gene_id "RvY_02990"; transcript_id "RvY_02990.1"; gene_name "CWC15"; annotation "protein CWC15"; Pfam "[Cwf_Cwc_15] Cwf15/Cwc15 cell cycle control protein"; KO "K12863"; similar_genes "CWC15_DANRE(e-value:1.6e-17;bit-score:87.0)"; Scaffold001 rebuild exon 8324173 8324303 . + . gene_id "RvY_02990"; transcript_id "RvY_02990.1"; Scaffold001 rebuild exon 8324364 8324476 . + . gene_id "RvY_02990"; transcript_id "RvY_02990.1"; Scaffold001 rebuild exon 8324538 8324743 . + . gene_id "RvY_02990"; transcript_id "RvY_02990.1"; Scaffold001 rebuild exon 8324954 8325196 . + . gene_id "RvY_02990"; transcript_id "RvY_02990.1"; Scaffold001 rebuild transcript 8325341 8332490 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; gene_name "ANKIB1"; annotation "putative Ankyrin repeat and IBR domain-containing protein 1"; Pfam "[IBR]|[Ank_2] Ankyrin repeats (3 copies)|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "K11967"; similar_genes "AKIB1_MOUSE(e-value:2.1e-49;bit-score:193.0)"; Scaffold001 rebuild exon 8325341 8325657 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8325914 8326087 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8326187 8326333 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8326407 8326590 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8326860 8327282 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8329218 8329465 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8329574 8329634 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8329860 8329903 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8329994 8330252 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8330550 8330694 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8330763 8330851 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8330928 8331106 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8331314 8331431 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8331500 8331685 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8331811 8331867 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8332031 8332247 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild exon 8332306 8332490 . - . gene_id "RvY_02991"; transcript_id "RvY_02991.1"; Scaffold001 rebuild transcript 8333707 8335099 . + . gene_id "RvY_02992"; transcript_id "RvY_02992.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8333707 8333831 . + . gene_id "RvY_02992"; transcript_id "RvY_02992.1"; Scaffold001 rebuild exon 8334934 8335099 . + . gene_id "RvY_02992"; transcript_id "RvY_02992.1"; Scaffold001 rebuild transcript 8335404 8336042 . - . gene_id "RvY_02993"; transcript_id "RvY_02993.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8335404 8335633 . - . gene_id "RvY_02993"; transcript_id "RvY_02993.1"; Scaffold001 rebuild exon 8335835 8336042 . - . gene_id "RvY_02993"; transcript_id "RvY_02993.1"; Scaffold001 rebuild transcript 8339910 8341517 . + . gene_id "RvY_02994"; transcript_id "RvY_02994.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8339910 8340073 . + . gene_id "RvY_02994"; transcript_id "RvY_02994.1"; Scaffold001 rebuild exon 8340971 8341517 . + . gene_id "RvY_02994"; transcript_id "RvY_02994.1"; Scaffold001 rebuild transcript 8343796 8344191 . + . gene_id "RvY_02995"; transcript_id "RvY_02995.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8343796 8343956 . + . gene_id "RvY_02995"; transcript_id "RvY_02995.1"; Scaffold001 rebuild exon 8344041 8344191 . + . gene_id "RvY_02995"; transcript_id "RvY_02995.1"; Scaffold001 rebuild transcript 8344231 8345426 . + . gene_id "RvY_02996"; transcript_id "RvY_02996.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8344231 8344425 . + . gene_id "RvY_02996"; transcript_id "RvY_02996.1"; Scaffold001 rebuild exon 8345184 8345426 . + . gene_id "RvY_02996"; transcript_id "RvY_02996.1"; Scaffold001 rebuild transcript 8344368 8344613 . + . gene_id "RvY_02996"; transcript_id "RvY_02996.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8344368 8344613 . + . gene_id "RvY_02996"; transcript_id "RvY_02996.2"; Scaffold001 rebuild transcript 8348483 8349535 . - . gene_id "RvY_02997"; transcript_id "RvY_02997.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 8348483 8349535 . - . gene_id "RvY_02997"; transcript_id "RvY_02997.1"; Scaffold001 rebuild transcript 8348483 8349548 . - . gene_id "RvY_02997"; transcript_id "RvY_02997.2"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 8348483 8349357 . - . gene_id "RvY_02997"; transcript_id "RvY_02997.2"; Scaffold001 rebuild exon 8349428 8349548 . - . gene_id "RvY_02997"; transcript_id "RvY_02997.2"; Scaffold001 rebuild transcript 8349741 8355349 . - . gene_id "RvY_02998"; transcript_id "RvY_02998.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8349741 8349763 . - . gene_id "RvY_02998"; transcript_id "RvY_02998.1"; Scaffold001 rebuild exon 8354638 8355349 . - . gene_id "RvY_02998"; transcript_id "RvY_02998.1"; Scaffold001 rebuild transcript 8354627 8355349 . - . gene_id "RvY_02998"; transcript_id "RvY_02998.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8354627 8355349 . - . gene_id "RvY_02998"; transcript_id "RvY_02998.2"; Scaffold001 rebuild transcript 8351546 8351878 . + . gene_id "RvY_02999"; transcript_id "RvY_02999.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8351546 8351665 . + . gene_id "RvY_02999"; transcript_id "RvY_02999.1"; Scaffold001 rebuild exon 8351765 8351878 . + . gene_id "RvY_02999"; transcript_id "RvY_02999.1"; Scaffold001 rebuild transcript 8358444 8358962 . + . gene_id "RvY_03000"; transcript_id "RvY_03000.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8358444 8358962 . + . gene_id "RvY_03000"; transcript_id "RvY_03000.1"; Scaffold001 rebuild transcript 8359038 8359831 . + . gene_id "RvY_03001"; transcript_id "RvY_03001.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8359038 8359163 . + . gene_id "RvY_03001"; transcript_id "RvY_03001.1"; Scaffold001 rebuild exon 8359595 8359831 . + . gene_id "RvY_03001"; transcript_id "RvY_03001.1"; Scaffold001 rebuild transcript 8361216 8361401 . + . gene_id "RvY_03002"; transcript_id "RvY_03002.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8361216 8361401 . + . gene_id "RvY_03002"; transcript_id "RvY_03002.1"; Scaffold001 rebuild transcript 8361836 8362633 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8361836 8362633 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.1"; Scaffold001 rebuild transcript 8361836 8363507 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8361836 8362511 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.2"; Scaffold001 rebuild exon 8363368 8363398 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.2"; Scaffold001 rebuild exon 8363477 8363507 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.2"; Scaffold001 rebuild transcript 8361836 8363402 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8361836 8362511 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.3"; Scaffold001 rebuild exon 8363368 8363402 . + . gene_id "RvY_03003"; transcript_id "RvY_03003.3"; Scaffold001 rebuild transcript 8364378 8365784 . + . gene_id "RvY_03004"; transcript_id "RvY_03004.1"; gene_name "hemE"; annotation "Uroporphyrinogen decarboxylase"; Pfam "[URO-D] Uroporphyrinogen decarboxylase (URO-D)"; CDD "Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP)."; EC "EC4.1.1.37"; KO "K01599"; similar_genes "DCUP_DANRE(e-value:1.2e-87;bit-score:320.0)"; Scaffold001 rebuild exon 8364378 8365061 . + . gene_id "RvY_03004"; transcript_id "RvY_03004.1"; Scaffold001 rebuild exon 8365344 8365784 . + . gene_id "RvY_03004"; transcript_id "RvY_03004.1"; Scaffold001 rebuild transcript 8370504 8370719 . - . gene_id "RvY_03005"; transcript_id "RvY_03005.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8370504 8370719 . - . gene_id "RvY_03005"; transcript_id "RvY_03005.1"; Scaffold001 rebuild transcript 8371822 8373175 . + . gene_id "RvY_03006"; transcript_id "RvY_03006.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold001 rebuild exon 8371822 8372159 . + . gene_id "RvY_03006"; transcript_id "RvY_03006.1"; Scaffold001 rebuild exon 8372416 8373175 . + . gene_id "RvY_03006"; transcript_id "RvY_03006.1"; Scaffold001 rebuild transcript 8373695 8373952 . - . gene_id "RvY_03007"; transcript_id "RvY_03007.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8373695 8373952 . - . gene_id "RvY_03007"; transcript_id "RvY_03007.1"; Scaffold001 rebuild transcript 8374218 8375400 . - . gene_id "RvY_03008"; transcript_id "RvY_03008.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8374218 8374593 . - . gene_id "RvY_03008"; transcript_id "RvY_03008.1"; Scaffold001 rebuild exon 8374985 8375400 . - . gene_id "RvY_03008"; transcript_id "RvY_03008.1"; Scaffold001 rebuild transcript 8375661 8375855 . - . gene_id "RvY_03009"; transcript_id "RvY_03009.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8375661 8375855 . - . gene_id "RvY_03009"; transcript_id "RvY_03009.1"; Scaffold001 rebuild transcript 8375940 8377420 . - . gene_id "RvY_03010"; transcript_id "RvY_03010.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8375940 8376138 . - . gene_id "RvY_03010"; transcript_id "RvY_03010.1"; Scaffold001 rebuild exon 8377266 8377420 . - . gene_id "RvY_03010"; transcript_id "RvY_03010.1"; Scaffold001 rebuild transcript 8378442 8380702 . - . gene_id "RvY_03011"; transcript_id "RvY_03011.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold001 rebuild exon 8378442 8378799 . - . gene_id "RvY_03011"; transcript_id "RvY_03011.1"; Scaffold001 rebuild exon 8379377 8379735 . - . gene_id "RvY_03011"; transcript_id "RvY_03011.1"; Scaffold001 rebuild exon 8379990 8380453 . - . gene_id "RvY_03011"; transcript_id "RvY_03011.1"; Scaffold001 rebuild exon 8380561 8380702 . - . gene_id "RvY_03011"; transcript_id "RvY_03011.1"; Scaffold001 rebuild transcript 8380952 8381608 . - . gene_id "RvY_03012"; transcript_id "RvY_03012.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8380952 8381608 . - . gene_id "RvY_03012"; transcript_id "RvY_03012.1"; Scaffold001 rebuild transcript 8383007 8389115 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; gene_name "MCRS1"; annotation "microspherule protein 1"; Pfam "[MCRS_N] N-terminal region of micro-spherule protein"; KO "K11674"; similar_genes "MCRS1_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold001 rebuild exon 8383007 8383334 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8383405 8383514 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8383682 8384114 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8384343 8384896 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8384960 8385226 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8385447 8385755 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8385968 8386270 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8386351 8386460 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8386538 8386646 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8386699 8386843 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8386906 8386999 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8387064 8387098 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8387167 8387274 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8387427 8387521 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8387593 8387808 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8388166 8388469 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild exon 8388745 8389115 . + . gene_id "RvY_03013"; transcript_id "RvY_03013.1"; Scaffold001 rebuild transcript 8393735 8394634 . + . gene_id "RvY_03014"; transcript_id "RvY_03014.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8393735 8394063 . + . gene_id "RvY_03014"; transcript_id "RvY_03014.1"; Scaffold001 rebuild exon 8394517 8394634 . + . gene_id "RvY_03014"; transcript_id "RvY_03014.1"; Scaffold001 rebuild transcript 8395612 8398330 . + . gene_id "RvY_03015"; transcript_id "RvY_03015.1"; annotation "Fez family zinc finger protein 2"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "FEZF2_BOVIN(e-value:8.5e-91;bit-score:331.0)"; Scaffold001 rebuild exon 8395612 8396088 . + . gene_id "RvY_03015"; transcript_id "RvY_03015.1"; Scaffold001 rebuild exon 8396455 8396712 . + . gene_id "RvY_03015"; transcript_id "RvY_03015.1"; Scaffold001 rebuild exon 8397196 8397387 . + . gene_id "RvY_03015"; transcript_id "RvY_03015.1"; Scaffold001 rebuild exon 8397558 8397701 . + . gene_id "RvY_03015"; transcript_id "RvY_03015.1"; Scaffold001 rebuild exon 8397989 8398330 . + . gene_id "RvY_03015"; transcript_id "RvY_03015.1"; Scaffold001 rebuild transcript 8398640 8399960 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8398640 8398650 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.1"; Scaffold001 rebuild exon 8398717 8398790 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.1"; Scaffold001 rebuild exon 8399184 8399237 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.1"; Scaffold001 rebuild exon 8399629 8399960 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.1"; Scaffold001 rebuild transcript 8399180 8399960 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8399180 8399237 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.2"; Scaffold001 rebuild exon 8399629 8399960 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.2"; Scaffold001 rebuild transcript 8398771 8399136 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8398771 8399136 . - . gene_id "RvY_03016"; transcript_id "RvY_03016.3"; Scaffold001 rebuild transcript 8406086 8406562 . + . gene_id "RvY_03017"; transcript_id "RvY_03017.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8406086 8406562 . + . gene_id "RvY_03017"; transcript_id "RvY_03017.1"; Scaffold001 rebuild transcript 8407313 8408138 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.1"; annotation "(1,3)putative Acetylcholine receptor subunit beta-like 2(2)hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "(1)ACH4_DROME(e-value:1.3e-42;bit-score:171.0)(3)ACH4_DROME(e-value:1.0e-27;bit-score:121.0)"; Scaffold001 rebuild exon 8407313 8407519 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.1"; Scaffold001 rebuild exon 8407674 8407718 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.1"; Scaffold001 rebuild exon 8407798 8407907 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.1"; Scaffold001 rebuild exon 8408009 8408138 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.1"; Scaffold001 rebuild transcript 8407313 8407771 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.2"; annotation "(1,3)putative Acetylcholine receptor subunit beta-like 2(2)hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "(1)ACH4_DROME(e-value:1.3e-42;bit-score:171.0)(3)ACH4_DROME(e-value:1.0e-27;bit-score:121.0)"; Scaffold001 rebuild exon 8407313 8407771 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.2"; Scaffold001 rebuild transcript 8407313 8407911 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.3"; annotation "(1,3)putative Acetylcholine receptor subunit beta-like 2(2)hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "(1)ACH4_DROME(e-value:1.3e-42;bit-score:171.0)(3)ACH4_DROME(e-value:1.0e-27;bit-score:121.0)"; Scaffold001 rebuild exon 8407313 8407519 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.3"; Scaffold001 rebuild exon 8407674 8407718 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.3"; Scaffold001 rebuild exon 8407798 8407911 . + . gene_id "RvY_03018"; transcript_id "RvY_03018.3"; Scaffold001 rebuild transcript 8408662 8410498 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; annotation "putative Acetylcholine receptor subunit alpha-like"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region"; similar_genes "ACH1_MANSE(e-value:7.1e-33;bit-score:138.0)"; Scaffold001 rebuild exon 8408662 8408675 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild exon 8408738 8408771 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild exon 8408972 8409074 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild exon 8409145 8409377 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild exon 8409441 8409527 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild exon 8409704 8410051 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild exon 8410286 8410498 . + . gene_id "RvY_03019"; transcript_id "RvY_03019.1"; Scaffold001 rebuild transcript 8410754 8412586 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; gene_name "COG4886"; annotation "Protein phosphatase 1 regulatory subunit 7"; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "PP1R7_HUMAN(e-value:2.4e-65;bit-score:246.0)"; Scaffold001 rebuild exon 8410754 8410939 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8410998 8411084 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8411167 8411271 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8411556 8411672 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8411749 8411911 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8412002 8412132 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8412211 8412279 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8412342 8412445 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild exon 8412562 8412586 . - . gene_id "RvY_03020"; transcript_id "RvY_03020.1"; Scaffold001 rebuild transcript 8413168 8428021 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; annotation "hypothetical protein."; Pfam "[DRIM] Down-regulated in metastasis|[HEAT] HEAT repeat"; KO "K14772"; Scaffold001 rebuild exon 8413168 8413221 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8413301 8413451 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8413510 8413642 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8413709 8413897 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8414096 8414318 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8414381 8414521 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8414595 8414846 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8415463 8416043 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8416190 8416535 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8417191 8417344 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8417431 8417662 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8417722 8417917 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8418206 8418566 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8418923 8419269 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8419481 8419775 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8420087 8420460 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8420525 8420584 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8420872 8421033 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8421103 8421361 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8421685 8422117 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8422383 8422668 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8422743 8423042 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8423607 8423705 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8423768 8423935 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8424008 8424177 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8424288 8424549 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8424827 8425129 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8425194 8425304 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8425366 8425518 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8425577 8425693 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8426053 8426238 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8426356 8426497 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8426561 8426700 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8426766 8427059 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8427398 8427524 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8427633 8427778 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild exon 8427887 8428021 . + . gene_id "RvY_03021"; transcript_id "RvY_03021.1"; Scaffold001 rebuild transcript 8428312 8429863 . + . gene_id "RvY_03022"; transcript_id "RvY_03022.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold001 rebuild exon 8428312 8428661 . + . gene_id "RvY_03022"; transcript_id "RvY_03022.1"; Scaffold001 rebuild exon 8428949 8429656 . + . gene_id "RvY_03022"; transcript_id "RvY_03022.1"; Scaffold001 rebuild exon 8429728 8429863 . + . gene_id "RvY_03022"; transcript_id "RvY_03022.1"; Scaffold001 rebuild transcript 8430180 8430695 . - . gene_id "RvY_03023"; transcript_id "RvY_03023.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8430180 8430695 . - . gene_id "RvY_03023"; transcript_id "RvY_03023.1"; Scaffold001 rebuild transcript 8430223 8430846 . + . gene_id "RvY_03024"; transcript_id "RvY_03024.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8430223 8430846 . + . gene_id "RvY_03024"; transcript_id "RvY_03024.1"; Scaffold001 rebuild transcript 8432231 8432686 . + . gene_id "RvY_03025"; transcript_id "RvY_03025.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8432231 8432686 . + . gene_id "RvY_03025"; transcript_id "RvY_03025.1"; Scaffold001 rebuild transcript 8432368 8432727 . - . gene_id "RvY_03026"; transcript_id "RvY_03026.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8432368 8432727 . - . gene_id "RvY_03026"; transcript_id "RvY_03026.1"; Scaffold001 rebuild transcript 8433240 8434121 . + . gene_id "RvY_03027"; transcript_id "RvY_03027.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8433240 8434121 . + . gene_id "RvY_03027"; transcript_id "RvY_03027.1"; Scaffold001 rebuild transcript 8434702 8435575 . + . gene_id "RvY_03028"; transcript_id "RvY_03028.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8434702 8434725 . + . gene_id "RvY_03028"; transcript_id "RvY_03028.1"; Scaffold001 rebuild exon 8435285 8435575 . + . gene_id "RvY_03028"; transcript_id "RvY_03028.1"; Scaffold001 rebuild transcript 8435983 8436356 . + . gene_id "RvY_03029"; transcript_id "RvY_03029.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8435983 8436045 . + . gene_id "RvY_03029"; transcript_id "RvY_03029.1"; Scaffold001 rebuild exon 8436123 8436356 . + . gene_id "RvY_03029"; transcript_id "RvY_03029.1"; Scaffold001 rebuild transcript 8437478 8437765 . - . gene_id "RvY_03030"; transcript_id "RvY_03030.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8437478 8437765 . - . gene_id "RvY_03030"; transcript_id "RvY_03030.1"; Scaffold001 rebuild transcript 8437804 8439653 . - . gene_id "RvY_03031"; transcript_id "RvY_03031.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 8437804 8438535 . - . gene_id "RvY_03031"; transcript_id "RvY_03031.1"; Scaffold001 rebuild exon 8438909 8439120 . - . gene_id "RvY_03031"; transcript_id "RvY_03031.1"; Scaffold001 rebuild exon 8439161 8439317 . - . gene_id "RvY_03031"; transcript_id "RvY_03031.1"; Scaffold001 rebuild exon 8439483 8439653 . - . gene_id "RvY_03031"; transcript_id "RvY_03031.1"; Scaffold001 rebuild transcript 8439810 8442582 . - . gene_id "RvY_03032"; transcript_id "RvY_03032.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 8439810 8440930 . - . gene_id "RvY_03032"; transcript_id "RvY_03032.1"; Scaffold001 rebuild exon 8441776 8442403 . - . gene_id "RvY_03032"; transcript_id "RvY_03032.1"; Scaffold001 rebuild exon 8442517 8442582 . - . gene_id "RvY_03032"; transcript_id "RvY_03032.1"; Scaffold001 rebuild transcript 8442736 8443328 . - . gene_id "RvY_03033"; transcript_id "RvY_03033.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8442736 8442927 . - . gene_id "RvY_03033"; transcript_id "RvY_03033.1"; Scaffold001 rebuild exon 8443290 8443328 . - . gene_id "RvY_03033"; transcript_id "RvY_03033.1"; Scaffold001 rebuild transcript 8444135 8444494 . + . gene_id "RvY_03034"; transcript_id "RvY_03034.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8444135 8444494 . + . gene_id "RvY_03034"; transcript_id "RvY_03034.1"; Scaffold001 rebuild transcript 8445286 8445785 . + . gene_id "RvY_03035"; transcript_id "RvY_03035.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8445286 8445529 . + . gene_id "RvY_03035"; transcript_id "RvY_03035.1"; Scaffold001 rebuild exon 8445730 8445785 . + . gene_id "RvY_03035"; transcript_id "RvY_03035.1"; Scaffold001 rebuild transcript 8447510 8447959 . - . gene_id "RvY_03036"; transcript_id "RvY_03036.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8447510 8447959 . - . gene_id "RvY_03036"; transcript_id "RvY_03036.1"; Scaffold001 rebuild transcript 8447970 8449958 . - . gene_id "RvY_03037"; transcript_id "RvY_03037.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8447970 8448230 . - . gene_id "RvY_03037"; transcript_id "RvY_03037.1"; Scaffold001 rebuild exon 8448526 8448704 . - . gene_id "RvY_03037"; transcript_id "RvY_03037.1"; Scaffold001 rebuild exon 8448754 8448970 . - . gene_id "RvY_03037"; transcript_id "RvY_03037.1"; Scaffold001 rebuild exon 8449842 8449958 . - . gene_id "RvY_03037"; transcript_id "RvY_03037.1"; Scaffold001 rebuild transcript 8450547 8450717 . - . gene_id "RvY_03038"; transcript_id "RvY_03038.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8450547 8450717 . - . gene_id "RvY_03038"; transcript_id "RvY_03038.1"; Scaffold001 rebuild transcript 8451478 8452650 . + . gene_id "RvY_03039"; transcript_id "RvY_03039.1"; annotation "hypothetical protein."; Pfam "[Glyco_tranf_2_4] Glycosyl transferase family 2|[Glyco_transf_92] Glycosyltransferase family 92"; Scaffold001 rebuild exon 8451478 8452650 . + . gene_id "RvY_03039"; transcript_id "RvY_03039.1"; Scaffold001 rebuild transcript 8451478 8454036 . + . gene_id "RvY_03039"; transcript_id "RvY_03039.2"; annotation "hypothetical protein."; Pfam "[Glyco_tranf_2_4] Glycosyl transferase family 2|[Glyco_transf_92] Glycosyltransferase family 92"; Scaffold001 rebuild exon 8451478 8451790 . + . gene_id "RvY_03039"; transcript_id "RvY_03039.2"; Scaffold001 rebuild exon 8452178 8452522 . + . gene_id "RvY_03039"; transcript_id "RvY_03039.2"; Scaffold001 rebuild exon 8454029 8454036 . + . gene_id "RvY_03039"; transcript_id "RvY_03039.2"; Scaffold001 rebuild transcript 8454911 8455586 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8454911 8455097 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.1"; Scaffold001 rebuild exon 8455258 8455586 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.1"; Scaffold001 rebuild transcript 8454553 8455059 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8454553 8454599 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.2"; Scaffold001 rebuild exon 8454684 8455059 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.2"; Scaffold001 rebuild transcript 8454693 8455052 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8454693 8455052 . + . gene_id "RvY_03040"; transcript_id "RvY_03040.3"; Scaffold001 rebuild transcript 8455913 8456717 . + . gene_id "RvY_03041"; transcript_id "RvY_03041.1"; annotation "hypothetical protein."; Pfam "[rve] Integrase core domain"; Scaffold001 rebuild exon 8455913 8456155 . + . gene_id "RvY_03041"; transcript_id "RvY_03041.1"; Scaffold001 rebuild exon 8456242 8456348 . + . gene_id "RvY_03041"; transcript_id "RvY_03041.1"; Scaffold001 rebuild exon 8456462 8456717 . + . gene_id "RvY_03041"; transcript_id "RvY_03041.1"; Scaffold001 rebuild transcript 8458103 8458444 . + . gene_id "RvY_03042"; transcript_id "RvY_03042.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8458103 8458444 . + . gene_id "RvY_03042"; transcript_id "RvY_03042.1"; Scaffold001 rebuild transcript 8458353 8459230 . - . gene_id "RvY_03043"; transcript_id "RvY_03043.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8458353 8458492 . - . gene_id "RvY_03043"; transcript_id "RvY_03043.1"; Scaffold001 rebuild exon 8458573 8459230 . - . gene_id "RvY_03043"; transcript_id "RvY_03043.1"; Scaffold001 rebuild transcript 8459551 8460045 . - . gene_id "RvY_03044"; transcript_id "RvY_03044.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8459551 8460045 . - . gene_id "RvY_03044"; transcript_id "RvY_03044.1"; Scaffold001 rebuild transcript 8460232 8461247 . + . gene_id "RvY_03045"; transcript_id "RvY_03045.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8460232 8460305 . + . gene_id "RvY_03045"; transcript_id "RvY_03045.1"; Scaffold001 rebuild exon 8461025 8461247 . + . gene_id "RvY_03045"; transcript_id "RvY_03045.1"; Scaffold001 rebuild transcript 8462018 8462574 . - . gene_id "RvY_03046"; transcript_id "RvY_03046.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8462018 8462102 . - . gene_id "RvY_03046"; transcript_id "RvY_03046.1"; Scaffold001 rebuild exon 8462165 8462574 . - . gene_id "RvY_03046"; transcript_id "RvY_03046.1"; Scaffold001 rebuild transcript 8465136 8465453 . - . gene_id "RvY_03047"; transcript_id "RvY_03047.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8465136 8465453 . - . gene_id "RvY_03047"; transcript_id "RvY_03047.1"; Scaffold001 rebuild transcript 8466588 8467445 . + . gene_id "RvY_03048"; transcript_id "RvY_03048.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 8466588 8467445 . + . gene_id "RvY_03048"; transcript_id "RvY_03048.1"; Scaffold001 rebuild transcript 8470450 8471877 . - . gene_id "RvY_03049"; transcript_id "RvY_03049.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8470450 8470620 . - . gene_id "RvY_03049"; transcript_id "RvY_03049.1"; Scaffold001 rebuild exon 8471090 8471438 . - . gene_id "RvY_03049"; transcript_id "RvY_03049.1"; Scaffold001 rebuild exon 8471840 8471877 . - . gene_id "RvY_03049"; transcript_id "RvY_03049.1"; Scaffold001 rebuild transcript 8471969 8472321 . + . gene_id "RvY_03050"; transcript_id "RvY_03050.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8471969 8472133 . + . gene_id "RvY_03050"; transcript_id "RvY_03050.1"; Scaffold001 rebuild exon 8472163 8472321 . + . gene_id "RvY_03050"; transcript_id "RvY_03050.1"; Scaffold001 rebuild transcript 8472537 8473184 . + . gene_id "RvY_03051"; transcript_id "RvY_03051.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8472537 8473184 . + . gene_id "RvY_03051"; transcript_id "RvY_03051.1"; Scaffold001 rebuild transcript 8473549 8473881 . + . gene_id "RvY_03052"; transcript_id "RvY_03052.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8473549 8473881 . + . gene_id "RvY_03052"; transcript_id "RvY_03052.1"; Scaffold001 rebuild transcript 8473884 8474444 . - . gene_id "RvY_03053"; transcript_id "RvY_03053.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8473884 8473940 . - . gene_id "RvY_03053"; transcript_id "RvY_03053.1"; Scaffold001 rebuild exon 8474163 8474444 . - . gene_id "RvY_03053"; transcript_id "RvY_03053.1"; Scaffold001 rebuild transcript 8475241 8476258 . + . gene_id "RvY_03054"; transcript_id "RvY_03054.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8475241 8475453 . + . gene_id "RvY_03054"; transcript_id "RvY_03054.1"; Scaffold001 rebuild exon 8475715 8475807 . + . gene_id "RvY_03054"; transcript_id "RvY_03054.1"; Scaffold001 rebuild exon 8476034 8476258 . + . gene_id "RvY_03054"; transcript_id "RvY_03054.1"; Scaffold001 rebuild transcript 8475241 8475606 . + . gene_id "RvY_03054"; transcript_id "RvY_03054.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8475241 8475606 . + . gene_id "RvY_03054"; transcript_id "RvY_03054.2"; Scaffold001 rebuild transcript 8475628 8476130 . - . gene_id "RvY_03055"; transcript_id "RvY_03055.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8475628 8475773 . - . gene_id "RvY_03055"; transcript_id "RvY_03055.1"; Scaffold001 rebuild exon 8476106 8476130 . - . gene_id "RvY_03055"; transcript_id "RvY_03055.1"; Scaffold001 rebuild transcript 8476852 8477859 . + . gene_id "RvY_03056"; transcript_id "RvY_03056.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8476852 8477859 . + . gene_id "RvY_03056"; transcript_id "RvY_03056.1"; Scaffold001 rebuild transcript 8478240 8478626 . - . gene_id "RvY_03057"; transcript_id "RvY_03057.1"; gene_name "(2)INT_Cre"; annotation "hypothetical protein."; CDD "(2)Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold001 rebuild exon 8478240 8478626 . - . gene_id "RvY_03057"; transcript_id "RvY_03057.1"; Scaffold001 rebuild transcript 8478035 8478388 . - . gene_id "RvY_03057"; transcript_id "RvY_03057.2"; gene_name "(2)INT_Cre"; annotation "hypothetical protein."; CDD "(2)Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold001 rebuild exon 8478035 8478388 . - . gene_id "RvY_03057"; transcript_id "RvY_03057.2"; Scaffold001 rebuild transcript 8477884 8478159 . - . gene_id "RvY_03057"; transcript_id "RvY_03057.3"; gene_name "(2)INT_Cre"; annotation "hypothetical protein."; CDD "(2)Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold001 rebuild exon 8477884 8478159 . - . gene_id "RvY_03057"; transcript_id "RvY_03057.3"; Scaffold001 rebuild transcript 8484752 8486470 . - . gene_id "RvY_03058"; transcript_id "RvY_03058.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8484752 8484883 . - . gene_id "RvY_03058"; transcript_id "RvY_03058.1"; Scaffold001 rebuild exon 8486366 8486470 . - . gene_id "RvY_03058"; transcript_id "RvY_03058.1"; Scaffold001 rebuild transcript 8486237 8486470 . - . gene_id "RvY_03058"; transcript_id "RvY_03058.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8486237 8486470 . - . gene_id "RvY_03058"; transcript_id "RvY_03058.2"; Scaffold001 rebuild transcript 8486195 8486476 . + . gene_id "RvY_03059"; transcript_id "RvY_03059.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8486195 8486476 . + . gene_id "RvY_03059"; transcript_id "RvY_03059.1"; Scaffold001 rebuild transcript 8486550 8486780 . + . gene_id "RvY_03060"; transcript_id "RvY_03060.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8486550 8486780 . + . gene_id "RvY_03060"; transcript_id "RvY_03060.1"; Scaffold001 rebuild transcript 8486720 8487214 . - . gene_id "RvY_03061"; transcript_id "RvY_03061.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8486720 8486833 . - . gene_id "RvY_03061"; transcript_id "RvY_03061.1"; Scaffold001 rebuild exon 8486906 8487214 . - . gene_id "RvY_03061"; transcript_id "RvY_03061.1"; Scaffold001 rebuild transcript 8489400 8490796 . + . gene_id "RvY_03062"; transcript_id "RvY_03062.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8489400 8489925 . + . gene_id "RvY_03062"; transcript_id "RvY_03062.1"; Scaffold001 rebuild exon 8490012 8490796 . + . gene_id "RvY_03062"; transcript_id "RvY_03062.1"; Scaffold001 rebuild transcript 8491752 8492376 . + . gene_id "RvY_03063"; transcript_id "RvY_03063.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8491752 8491847 . + . gene_id "RvY_03063"; transcript_id "RvY_03063.1"; Scaffold001 rebuild exon 8492101 8492376 . + . gene_id "RvY_03063"; transcript_id "RvY_03063.1"; Scaffold001 rebuild transcript 8495038 8495232 . - . gene_id "RvY_03064"; transcript_id "RvY_03064.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8495038 8495232 . - . gene_id "RvY_03064"; transcript_id "RvY_03064.1"; Scaffold001 rebuild transcript 8497650 8498033 . + . gene_id "RvY_03065"; transcript_id "RvY_03065.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8497650 8498033 . + . gene_id "RvY_03065"; transcript_id "RvY_03065.1"; Scaffold001 rebuild transcript 8499488 8502603 . + . gene_id "RvY_03066"; transcript_id "RvY_03066.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8499488 8499621 . + . gene_id "RvY_03066"; transcript_id "RvY_03066.1"; Scaffold001 rebuild exon 8502303 8502603 . + . gene_id "RvY_03066"; transcript_id "RvY_03066.1"; Scaffold001 rebuild transcript 8500991 8501149 . - . gene_id "RvY_03067"; transcript_id "RvY_03067.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8500991 8501149 . - . gene_id "RvY_03067"; transcript_id "RvY_03067.1"; Scaffold001 rebuild transcript 8506659 8507222 . - . gene_id "RvY_03068"; transcript_id "RvY_03068.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8506659 8506705 . - . gene_id "RvY_03068"; transcript_id "RvY_03068.1"; Scaffold001 rebuild exon 8506772 8507222 . - . gene_id "RvY_03068"; transcript_id "RvY_03068.1"; Scaffold001 rebuild transcript 8506767 8507222 . - . gene_id "RvY_03068"; transcript_id "RvY_03068.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8506767 8507222 . - . gene_id "RvY_03068"; transcript_id "RvY_03068.2"; Scaffold001 rebuild transcript 8507451 8507762 . - . gene_id "RvY_03069"; transcript_id "RvY_03069.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8507451 8507680 . - . gene_id "RvY_03069"; transcript_id "RvY_03069.1"; Scaffold001 rebuild exon 8507750 8507762 . - . gene_id "RvY_03069"; transcript_id "RvY_03069.1"; Scaffold001 rebuild transcript 8508640 8512014 . + . gene_id "RvY_03070"; transcript_id "RvY_03070.1"; gene_name "UDPGT"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "UDP-glucoronosyl and UDP-glucosyl transferase."; Scaffold001 rebuild exon 8508640 8508930 . + . gene_id "RvY_03070"; transcript_id "RvY_03070.1"; Scaffold001 rebuild exon 8509290 8509596 . + . gene_id "RvY_03070"; transcript_id "RvY_03070.1"; Scaffold001 rebuild exon 8510870 8511145 . + . gene_id "RvY_03070"; transcript_id "RvY_03070.1"; Scaffold001 rebuild exon 8511347 8511508 . + . gene_id "RvY_03070"; transcript_id "RvY_03070.1"; Scaffold001 rebuild exon 8511656 8512014 . + . gene_id "RvY_03070"; transcript_id "RvY_03070.1"; Scaffold001 rebuild transcript 8509344 8509706 . - . gene_id "RvY_03071"; transcript_id "RvY_03071.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8509344 8509706 . - . gene_id "RvY_03071"; transcript_id "RvY_03071.1"; Scaffold001 rebuild transcript 8513323 8518336 . + . gene_id "RvY_03072"; transcript_id "RvY_03072.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8513323 8513492 . + . gene_id "RvY_03072"; transcript_id "RvY_03072.1"; Scaffold001 rebuild exon 8518177 8518336 . + . gene_id "RvY_03072"; transcript_id "RvY_03072.1"; Scaffold001 rebuild transcript 8513646 8513951 . + . gene_id "RvY_03072"; transcript_id "RvY_03072.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8513646 8513951 . + . gene_id "RvY_03072"; transcript_id "RvY_03072.2"; Scaffold001 rebuild transcript 8518635 8520515 . + . gene_id "RvY_03073"; transcript_id "RvY_03073.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8518635 8518988 . + . gene_id "RvY_03073"; transcript_id "RvY_03073.1"; Scaffold001 rebuild exon 8519067 8519510 . + . gene_id "RvY_03073"; transcript_id "RvY_03073.1"; Scaffold001 rebuild exon 8519877 8520515 . + . gene_id "RvY_03073"; transcript_id "RvY_03073.1"; Scaffold001 rebuild transcript 8522938 8523716 . - . gene_id "RvY_03074"; transcript_id "RvY_03074.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8522938 8523518 . - . gene_id "RvY_03074"; transcript_id "RvY_03074.1"; Scaffold001 rebuild exon 8523599 8523716 . - . gene_id "RvY_03074"; transcript_id "RvY_03074.1"; Scaffold001 rebuild transcript 8524738 8526073 . + . gene_id "RvY_03075"; transcript_id "RvY_03075.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8524738 8525512 . + . gene_id "RvY_03075"; transcript_id "RvY_03075.1"; Scaffold001 rebuild exon 8525700 8526073 . + . gene_id "RvY_03075"; transcript_id "RvY_03075.1"; Scaffold001 rebuild transcript 8527213 8527587 . + . gene_id "RvY_03076"; transcript_id "RvY_03076.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8527213 8527587 . + . gene_id "RvY_03076"; transcript_id "RvY_03076.1"; Scaffold001 rebuild transcript 8527611 8528407 . + . gene_id "RvY_03077"; transcript_id "RvY_03077.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8527611 8527950 . + . gene_id "RvY_03077"; transcript_id "RvY_03077.1"; Scaffold001 rebuild exon 8528265 8528407 . + . gene_id "RvY_03077"; transcript_id "RvY_03077.1"; Scaffold001 rebuild transcript 8528723 8529279 . - . gene_id "RvY_03078"; transcript_id "RvY_03078.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8528723 8528807 . - . gene_id "RvY_03078"; transcript_id "RvY_03078.1"; Scaffold001 rebuild exon 8528870 8529279 . - . gene_id "RvY_03078"; transcript_id "RvY_03078.1"; Scaffold001 rebuild transcript 8530430 8531683 . + . gene_id "RvY_03079"; transcript_id "RvY_03079.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8530430 8531683 . + . gene_id "RvY_03079"; transcript_id "RvY_03079.1"; Scaffold001 rebuild transcript 8534762 8535820 . + . gene_id "RvY_03080"; transcript_id "RvY_03080.1"; annotation "hypothetical protein."; Pfam "(1)[DDE_1] DDE superfamily endonuclease|(2)[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 8534762 8534951 . + . gene_id "RvY_03080"; transcript_id "RvY_03080.1"; Scaffold001 rebuild exon 8535020 8535529 . + . gene_id "RvY_03080"; transcript_id "RvY_03080.1"; Scaffold001 rebuild exon 8535675 8535820 . + . gene_id "RvY_03080"; transcript_id "RvY_03080.1"; Scaffold001 rebuild transcript 8534461 8534886 . + . gene_id "RvY_03080"; transcript_id "RvY_03080.2"; annotation "hypothetical protein."; Pfam "(1)[DDE_1] DDE superfamily endonuclease|(2)[HTH_psq] helix-turn-helix, Psq domain"; Scaffold001 rebuild exon 8534461 8534886 . + . gene_id "RvY_03080"; transcript_id "RvY_03080.2"; Scaffold001 rebuild transcript 8536003 8536593 . + . gene_id "RvY_03081"; transcript_id "RvY_03081.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8536003 8536593 . + . gene_id "RvY_03081"; transcript_id "RvY_03081.1"; Scaffold001 rebuild transcript 8541668 8542997 . + . gene_id "RvY_03082"; transcript_id "RvY_03082.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8541668 8542006 . + . gene_id "RvY_03082"; transcript_id "RvY_03082.1"; Scaffold001 rebuild exon 8542060 8542296 . + . gene_id "RvY_03082"; transcript_id "RvY_03082.1"; Scaffold001 rebuild exon 8542353 8542484 . + . gene_id "RvY_03082"; transcript_id "RvY_03082.1"; Scaffold001 rebuild exon 8542629 8542892 . + . gene_id "RvY_03082"; transcript_id "RvY_03082.1"; Scaffold001 rebuild exon 8542950 8542997 . + . gene_id "RvY_03082"; transcript_id "RvY_03082.1"; Scaffold001 rebuild transcript 8548569 8549111 . - . gene_id "RvY_03083"; transcript_id "RvY_03083.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8548569 8549111 . - . gene_id "RvY_03083"; transcript_id "RvY_03083.1"; Scaffold001 rebuild transcript 8550295 8550483 . + . gene_id "RvY_03084"; transcript_id "RvY_03084.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8550295 8550483 . + . gene_id "RvY_03084"; transcript_id "RvY_03084.1"; Scaffold001 rebuild transcript 8551093 8551661 . + . gene_id "RvY_03085"; transcript_id "RvY_03085.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8551093 8551102 . + . gene_id "RvY_03085"; transcript_id "RvY_03085.1"; Scaffold001 rebuild exon 8551185 8551461 . + . gene_id "RvY_03085"; transcript_id "RvY_03085.1"; Scaffold001 rebuild exon 8551550 8551661 . + . gene_id "RvY_03085"; transcript_id "RvY_03085.1"; Scaffold001 rebuild transcript 8553238 8553758 . + . gene_id "RvY_03086"; transcript_id "RvY_03086.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8553238 8553358 . + . gene_id "RvY_03086"; transcript_id "RvY_03086.1"; Scaffold001 rebuild exon 8553640 8553758 . + . gene_id "RvY_03086"; transcript_id "RvY_03086.1"; Scaffold001 rebuild transcript 8554622 8557090 . + . gene_id "RvY_03087"; transcript_id "RvY_03087.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8554622 8554918 . + . gene_id "RvY_03087"; transcript_id "RvY_03087.1"; Scaffold001 rebuild exon 8555046 8555298 . + . gene_id "RvY_03087"; transcript_id "RvY_03087.1"; Scaffold001 rebuild exon 8555406 8555869 . + . gene_id "RvY_03087"; transcript_id "RvY_03087.1"; Scaffold001 rebuild exon 8556141 8556344 . + . gene_id "RvY_03087"; transcript_id "RvY_03087.1"; Scaffold001 rebuild exon 8556986 8557090 . + . gene_id "RvY_03087"; transcript_id "RvY_03087.1"; Scaffold001 rebuild transcript 8557867 8558196 . - . gene_id "RvY_03088"; transcript_id "RvY_03088.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8557867 8558196 . - . gene_id "RvY_03088"; transcript_id "RvY_03088.1"; Scaffold001 rebuild transcript 8558323 8558556 . + . gene_id "RvY_03089"; transcript_id "RvY_03089.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8558323 8558556 . + . gene_id "RvY_03089"; transcript_id "RvY_03089.1"; Scaffold001 rebuild transcript 8558593 8559844 . - . gene_id "RvY_03090"; transcript_id "RvY_03090.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8558593 8558713 . - . gene_id "RvY_03090"; transcript_id "RvY_03090.1"; Scaffold001 rebuild exon 8559741 8559844 . - . gene_id "RvY_03090"; transcript_id "RvY_03090.1"; Scaffold001 rebuild transcript 8560464 8561849 . + . gene_id "RvY_03091"; transcript_id "RvY_03091.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8560464 8561849 . + . gene_id "RvY_03091"; transcript_id "RvY_03091.1"; Scaffold001 rebuild transcript 8560473 8561852 . + . gene_id "RvY_03091"; transcript_id "RvY_03091.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8560473 8561852 . + . gene_id "RvY_03091"; transcript_id "RvY_03091.2"; Scaffold001 rebuild transcript 8561902 8565508 . + . gene_id "RvY_03092"; transcript_id "RvY_03092.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; Pfam "[Phage_integrase] Phage integrase family|[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold001 rebuild exon 8561902 8562997 . + . gene_id "RvY_03092"; transcript_id "RvY_03092.1"; Scaffold001 rebuild exon 8564724 8565508 . + . gene_id "RvY_03092"; transcript_id "RvY_03092.1"; Scaffold001 rebuild transcript 8570188 8570791 . - . gene_id "RvY_03093"; transcript_id "RvY_03093.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8570188 8570610 . - . gene_id "RvY_03093"; transcript_id "RvY_03093.1"; Scaffold001 rebuild exon 8570660 8570791 . - . gene_id "RvY_03093"; transcript_id "RvY_03093.1"; Scaffold001 rebuild transcript 8571096 8571895 . - . gene_id "RvY_03094"; transcript_id "RvY_03094.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold001 rebuild exon 8571096 8571165 . - . gene_id "RvY_03094"; transcript_id "RvY_03094.1"; Scaffold001 rebuild exon 8571246 8571895 . - . gene_id "RvY_03094"; transcript_id "RvY_03094.1"; Scaffold001 rebuild transcript 8571958 8572128 . - . gene_id "RvY_03095"; transcript_id "RvY_03095.1"; gene_name "PRK09752"; annotation "hypothetical protein."; CDD "adhesin; Provisional"; Scaffold001 rebuild exon 8571958 8572128 . - . gene_id "RvY_03095"; transcript_id "RvY_03095.1"; Scaffold001 rebuild transcript 8572409 8572672 . - . gene_id "RvY_03096"; transcript_id "RvY_03096.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8572409 8572672 . - . gene_id "RvY_03096"; transcript_id "RvY_03096.1"; Scaffold001 rebuild transcript 8573238 8573754 . + . gene_id "RvY_03097"; transcript_id "RvY_03097.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8573238 8573340 . + . gene_id "RvY_03097"; transcript_id "RvY_03097.1"; Scaffold001 rebuild exon 8573486 8573754 . + . gene_id "RvY_03097"; transcript_id "RvY_03097.1"; Scaffold001 rebuild transcript 8574244 8574920 . + . gene_id "RvY_03098"; transcript_id "RvY_03098.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8574244 8574386 . + . gene_id "RvY_03098"; transcript_id "RvY_03098.1"; Scaffold001 rebuild exon 8574545 8574920 . + . gene_id "RvY_03098"; transcript_id "RvY_03098.1"; Scaffold001 rebuild transcript 8576544 8577778 . + . gene_id "RvY_03099"; transcript_id "RvY_03099.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8576544 8576611 . + . gene_id "RvY_03099"; transcript_id "RvY_03099.1"; Scaffold001 rebuild exon 8576710 8576797 . + . gene_id "RvY_03099"; transcript_id "RvY_03099.1"; Scaffold001 rebuild exon 8577503 8577778 . + . gene_id "RvY_03099"; transcript_id "RvY_03099.1"; Scaffold001 rebuild transcript 8581131 8581436 . - . gene_id "RvY_03100"; transcript_id "RvY_03100.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8581131 8581436 . - . gene_id "RvY_03100"; transcript_id "RvY_03100.1"; Scaffold001 rebuild transcript 8581599 8581844 . - . gene_id "RvY_03101"; transcript_id "RvY_03101.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8581599 8581844 . - . gene_id "RvY_03101"; transcript_id "RvY_03101.1"; Scaffold001 rebuild transcript 8584477 8584824 . + . gene_id "RvY_03102"; transcript_id "RvY_03102.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8584477 8584824 . + . gene_id "RvY_03102"; transcript_id "RvY_03102.1"; Scaffold001 rebuild transcript 8586517 8587413 . + . gene_id "RvY_03103"; transcript_id "RvY_03103.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8586517 8586832 . + . gene_id "RvY_03103"; transcript_id "RvY_03103.1"; Scaffold001 rebuild exon 8586893 8587413 . + . gene_id "RvY_03103"; transcript_id "RvY_03103.1"; Scaffold001 rebuild transcript 8587994 8588483 . + . gene_id "RvY_03104"; transcript_id "RvY_03104.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8587994 8588227 . + . gene_id "RvY_03104"; transcript_id "RvY_03104.1"; Scaffold001 rebuild exon 8588250 8588483 . + . gene_id "RvY_03104"; transcript_id "RvY_03104.1"; Scaffold001 rebuild transcript 8588711 8589211 . + . gene_id "RvY_03105"; transcript_id "RvY_03105.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8588711 8588920 . + . gene_id "RvY_03105"; transcript_id "RvY_03105.1"; Scaffold001 rebuild exon 8588948 8589211 . + . gene_id "RvY_03105"; transcript_id "RvY_03105.1"; Scaffold001 rebuild transcript 8589355 8589723 . + . gene_id "RvY_03106"; transcript_id "RvY_03106.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8589355 8589723 . + . gene_id "RvY_03106"; transcript_id "RvY_03106.1"; Scaffold001 rebuild transcript 8591207 8592662 . + . gene_id "RvY_03107"; transcript_id "RvY_03107.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8591207 8591514 . + . gene_id "RvY_03107"; transcript_id "RvY_03107.1"; Scaffold001 rebuild exon 8591583 8591926 . + . gene_id "RvY_03107"; transcript_id "RvY_03107.1"; Scaffold001 rebuild exon 8591992 8592662 . + . gene_id "RvY_03107"; transcript_id "RvY_03107.1"; Scaffold001 rebuild transcript 8592720 8593037 . + . gene_id "RvY_03108"; transcript_id "RvY_03108.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8592720 8593037 . + . gene_id "RvY_03108"; transcript_id "RvY_03108.1"; Scaffold001 rebuild transcript 8594744 8596643 . + . gene_id "RvY_03109"; transcript_id "RvY_03109.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8594744 8594898 . + . gene_id "RvY_03109"; transcript_id "RvY_03109.1"; Scaffold001 rebuild exon 8596544 8596643 . + . gene_id "RvY_03109"; transcript_id "RvY_03109.1"; Scaffold001 rebuild transcript 8598891 8599088 . - . gene_id "RvY_03110"; transcript_id "RvY_03110.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8598891 8599088 . - . gene_id "RvY_03110"; transcript_id "RvY_03110.1"; Scaffold001 rebuild transcript 8600894 8601866 . + . gene_id "RvY_03111"; transcript_id "RvY_03111.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8600894 8601005 . + . gene_id "RvY_03111"; transcript_id "RvY_03111.1"; Scaffold001 rebuild exon 8601811 8601866 . + . gene_id "RvY_03111"; transcript_id "RvY_03111.1"; Scaffold001 rebuild transcript 8602005 8602463 . - . gene_id "RvY_03112"; transcript_id "RvY_03112.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 8602005 8602463 . - . gene_id "RvY_03112"; transcript_id "RvY_03112.1"; Scaffold001 rebuild transcript 8602454 8602834 . - . gene_id "RvY_03112"; transcript_id "RvY_03112.2"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 8602454 8602834 . - . gene_id "RvY_03112"; transcript_id "RvY_03112.2"; Scaffold001 rebuild transcript 8602919 8603740 . - . gene_id "RvY_03113"; transcript_id "RvY_03113.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8602919 8603740 . - . gene_id "RvY_03113"; transcript_id "RvY_03113.1"; Scaffold001 rebuild transcript 8603797 8604150 . - . gene_id "RvY_03114"; transcript_id "RvY_03114.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8603797 8604150 . - . gene_id "RvY_03114"; transcript_id "RvY_03114.1"; Scaffold001 rebuild transcript 8607609 8608533 . - . gene_id "RvY_03115"; transcript_id "RvY_03115.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8607609 8607964 . - . gene_id "RvY_03115"; transcript_id "RvY_03115.1"; Scaffold001 rebuild exon 8608128 8608533 . - . gene_id "RvY_03115"; transcript_id "RvY_03115.1"; Scaffold001 rebuild transcript 8607667 8608059 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8607667 8608059 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.1"; Scaffold001 rebuild transcript 8607667 8608260 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8607667 8607966 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.2"; Scaffold001 rebuild exon 8608177 8608260 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.2"; Scaffold001 rebuild transcript 8607667 8608180 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8607667 8607966 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.3"; Scaffold001 rebuild exon 8608130 8608180 . + . gene_id "RvY_03116"; transcript_id "RvY_03116.3"; Scaffold001 rebuild transcript 8608438 8608989 . + . gene_id "RvY_03117"; transcript_id "RvY_03117.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8608438 8608989 . + . gene_id "RvY_03117"; transcript_id "RvY_03117.1"; Scaffold001 rebuild transcript 8608674 8608883 . - . gene_id "RvY_03118"; transcript_id "RvY_03118.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8608674 8608883 . - . gene_id "RvY_03118"; transcript_id "RvY_03118.1"; Scaffold001 rebuild transcript 8609168 8609449 . + . gene_id "RvY_03119"; transcript_id "RvY_03119.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8609168 8609449 . + . gene_id "RvY_03119"; transcript_id "RvY_03119.1"; Scaffold001 rebuild transcript 8609713 8610180 . + . gene_id "RvY_03120"; transcript_id "RvY_03120.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8609713 8610180 . + . gene_id "RvY_03120"; transcript_id "RvY_03120.1"; Scaffold001 rebuild transcript 8610252 8610923 . + . gene_id "RvY_03121"; transcript_id "RvY_03121.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold001 rebuild exon 8610252 8610923 . + . gene_id "RvY_03121"; transcript_id "RvY_03121.1"; Scaffold001 rebuild transcript 8611173 8612064 . + . gene_id "RvY_03122"; transcript_id "RvY_03122.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8611173 8611336 . + . gene_id "RvY_03122"; transcript_id "RvY_03122.1"; Scaffold001 rebuild exon 8611902 8612064 . + . gene_id "RvY_03122"; transcript_id "RvY_03122.1"; Scaffold001 rebuild transcript 8613761 8614180 . - . gene_id "RvY_03123"; transcript_id "RvY_03123.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8613761 8614180 . - . gene_id "RvY_03123"; transcript_id "RvY_03123.1"; Scaffold001 rebuild transcript 8614361 8617807 . - . gene_id "RvY_03124"; transcript_id "RvY_03124.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8614361 8615016 . - . gene_id "RvY_03124"; transcript_id "RvY_03124.1"; Scaffold001 rebuild exon 8617492 8617807 . - . gene_id "RvY_03124"; transcript_id "RvY_03124.1"; Scaffold001 rebuild transcript 8617985 8618275 . - . gene_id "RvY_03125"; transcript_id "RvY_03125.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8617985 8618275 . - . gene_id "RvY_03125"; transcript_id "RvY_03125.1"; Scaffold001 rebuild transcript 8619955 8620425 . - . gene_id "RvY_03126"; transcript_id "RvY_03126.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8619955 8620425 . - . gene_id "RvY_03126"; transcript_id "RvY_03126.1"; Scaffold001 rebuild transcript 8619788 8620108 . - . gene_id "RvY_03126"; transcript_id "RvY_03126.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8619788 8620108 . - . gene_id "RvY_03126"; transcript_id "RvY_03126.2"; Scaffold001 rebuild transcript 8622627 8623242 . + . gene_id "RvY_03127"; transcript_id "RvY_03127.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8622627 8622758 . + . gene_id "RvY_03127"; transcript_id "RvY_03127.1"; Scaffold001 rebuild exon 8622889 8623242 . + . gene_id "RvY_03127"; transcript_id "RvY_03127.1"; Scaffold001 rebuild transcript 8623340 8623534 . - . gene_id "RvY_03128"; transcript_id "RvY_03128.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8623340 8623534 . - . gene_id "RvY_03128"; transcript_id "RvY_03128.1"; Scaffold001 rebuild transcript 8627402 8628636 . - . gene_id "RvY_03129"; transcript_id "RvY_03129.1"; gene_name "K07497"; annotation "putative transposase"; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; KO "K07497"; Scaffold001 rebuild exon 8627402 8628054 . - . gene_id "RvY_03129"; transcript_id "RvY_03129.1"; Scaffold001 rebuild exon 8628174 8628636 . - . gene_id "RvY_03129"; transcript_id "RvY_03129.1"; Scaffold001 rebuild transcript 8628773 8629441 . - . gene_id "RvY_03130"; transcript_id "RvY_03130.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8628773 8629441 . - . gene_id "RvY_03130"; transcript_id "RvY_03130.1"; Scaffold001 rebuild transcript 8629530 8630190 . - . gene_id "RvY_03131"; transcript_id "RvY_03131.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8629530 8629802 . - . gene_id "RvY_03131"; transcript_id "RvY_03131.1"; Scaffold001 rebuild exon 8630140 8630190 . - . gene_id "RvY_03131"; transcript_id "RvY_03131.1"; Scaffold001 rebuild transcript 8630279 8630626 . - . gene_id "RvY_03132"; transcript_id "RvY_03132.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8630279 8630626 . - . gene_id "RvY_03132"; transcript_id "RvY_03132.1"; Scaffold001 rebuild transcript 8630649 8631467 . - . gene_id "RvY_03133"; transcript_id "RvY_03133.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8630649 8631467 . - . gene_id "RvY_03133"; transcript_id "RvY_03133.1"; Scaffold001 rebuild transcript 8631642 8634571 . - . gene_id "RvY_03134"; transcript_id "RvY_03134.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8631642 8631671 . - . gene_id "RvY_03134"; transcript_id "RvY_03134.1"; Scaffold001 rebuild exon 8632015 8632323 . - . gene_id "RvY_03134"; transcript_id "RvY_03134.1"; Scaffold001 rebuild exon 8634146 8634408 . - . gene_id "RvY_03134"; transcript_id "RvY_03134.1"; Scaffold001 rebuild exon 8634490 8634571 . - . gene_id "RvY_03134"; transcript_id "RvY_03134.1"; Scaffold001 rebuild transcript 8635184 8635732 . + . gene_id "RvY_03135"; transcript_id "RvY_03135.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8635184 8635291 . + . gene_id "RvY_03135"; transcript_id "RvY_03135.1"; Scaffold001 rebuild exon 8635349 8635732 . + . gene_id "RvY_03135"; transcript_id "RvY_03135.1"; Scaffold001 rebuild transcript 8637220 8637432 . - . gene_id "RvY_03136"; transcript_id "RvY_03136.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8637220 8637432 . - . gene_id "RvY_03136"; transcript_id "RvY_03136.1"; Scaffold001 rebuild transcript 8638543 8641165 . + . gene_id "RvY_03137"; transcript_id "RvY_03137.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8638543 8638561 . + . gene_id "RvY_03137"; transcript_id "RvY_03137.1"; Scaffold001 rebuild exon 8640990 8641165 . + . gene_id "RvY_03137"; transcript_id "RvY_03137.1"; Scaffold001 rebuild transcript 8641611 8641811 . + . gene_id "RvY_03138"; transcript_id "RvY_03138.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8641611 8641811 . + . gene_id "RvY_03138"; transcript_id "RvY_03138.1"; Scaffold001 rebuild transcript 8642280 8642720 . - . gene_id "RvY_03139"; transcript_id "RvY_03139.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)|[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:7.2e-16;bit-score:82.0)"; Scaffold001 rebuild exon 8642280 8642720 . - . gene_id "RvY_03139"; transcript_id "RvY_03139.1"; Scaffold001 rebuild transcript 8646582 8646764 . - . gene_id "RvY_03140"; transcript_id "RvY_03140.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8646582 8646764 . - . gene_id "RvY_03140"; transcript_id "RvY_03140.1"; Scaffold001 rebuild transcript 8646622 8646855 . + . gene_id "RvY_03141"; transcript_id "RvY_03141.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8646622 8646855 . + . gene_id "RvY_03141"; transcript_id "RvY_03141.1"; Scaffold001 rebuild transcript 8646952 8647134 . - . gene_id "RvY_03142"; transcript_id "RvY_03142.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8646952 8647134 . - . gene_id "RvY_03142"; transcript_id "RvY_03142.1"; Scaffold001 rebuild transcript 8647152 8647750 . + . gene_id "RvY_03143"; transcript_id "RvY_03143.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8647152 8647350 . + . gene_id "RvY_03143"; transcript_id "RvY_03143.1"; Scaffold001 rebuild exon 8647626 8647750 . + . gene_id "RvY_03143"; transcript_id "RvY_03143.1"; Scaffold001 rebuild transcript 8648023 8648355 . + . gene_id "RvY_03144"; transcript_id "RvY_03144.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8648023 8648355 . + . gene_id "RvY_03144"; transcript_id "RvY_03144.1"; Scaffold001 rebuild transcript 8649909 8651029 . - . gene_id "RvY_03145"; transcript_id "RvY_03145.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8649909 8650117 . - . gene_id "RvY_03145"; transcript_id "RvY_03145.1"; Scaffold001 rebuild exon 8650939 8651029 . - . gene_id "RvY_03145"; transcript_id "RvY_03145.1"; Scaffold001 rebuild transcript 8652121 8652980 . - . gene_id "RvY_03146"; transcript_id "RvY_03146.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8652121 8652402 . - . gene_id "RvY_03146"; transcript_id "RvY_03146.1"; Scaffold001 rebuild exon 8652627 8652980 . - . gene_id "RvY_03146"; transcript_id "RvY_03146.1"; Scaffold001 rebuild transcript 8655309 8655494 . - . gene_id "RvY_03147"; transcript_id "RvY_03147.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8655309 8655494 . - . gene_id "RvY_03147"; transcript_id "RvY_03147.1"; Scaffold001 rebuild transcript 8659584 8660141 . + . gene_id "RvY_03148"; transcript_id "RvY_03148.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8659584 8659719 . + . gene_id "RvY_03148"; transcript_id "RvY_03148.1"; Scaffold001 rebuild exon 8659885 8660141 . + . gene_id "RvY_03148"; transcript_id "RvY_03148.1"; Scaffold001 rebuild transcript 8660148 8661298 . + . gene_id "RvY_03149"; transcript_id "RvY_03149.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8660148 8660571 . + . gene_id "RvY_03149"; transcript_id "RvY_03149.1"; Scaffold001 rebuild exon 8661090 8661298 . + . gene_id "RvY_03149"; transcript_id "RvY_03149.1"; Scaffold001 rebuild transcript 8663672 8664673 . + . gene_id "RvY_03150"; transcript_id "RvY_03150.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8663672 8664673 . + . gene_id "RvY_03150"; transcript_id "RvY_03150.1"; Scaffold001 rebuild transcript 8665196 8665513 . - . gene_id "RvY_03151"; transcript_id "RvY_03151.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8665196 8665513 . - . gene_id "RvY_03151"; transcript_id "RvY_03151.1"; Scaffold001 rebuild transcript 8667310 8668822 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.1"; gene_name "(1,3,4)GlcAT-I(2)B3GAT1"; annotation "(1,3,4)hypothetical protein.(2)galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [EC:2.4.1.135]"; Pfam "[Glyco_transf_43] Glycosyltransferase family 43"; CDD "Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The Scaffold001 rebuild exon 8667310 8667847 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.1"; Scaffold001 rebuild exon 8668413 8668822 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.1"; Scaffold001 rebuild transcript 8667310 8672924 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.2"; gene_name "(1,3,4)GlcAT-I(2)B3GAT1"; annotation "(1,3,4)hypothetical protein.(2)galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [EC:2.4.1.135]"; Pfam "[Glyco_transf_43] Glycosyltransferase family 43"; CDD "Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The Scaffold001 rebuild exon 8667310 8667847 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.2"; Scaffold001 rebuild exon 8672578 8672924 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.2"; Scaffold001 rebuild transcript 8667310 8667906 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.3"; gene_name "(1,3,4)GlcAT-I(2)B3GAT1"; annotation "(1,3,4)hypothetical protein.(2)galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [EC:2.4.1.135]"; Pfam "[Glyco_transf_43] Glycosyltransferase family 43"; CDD "Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The Scaffold001 rebuild exon 8667310 8667906 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.3"; Scaffold001 rebuild transcript 8667310 8668142 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.4"; gene_name "(1,3,4)GlcAT-I(2)B3GAT1"; annotation "(1,3,4)hypothetical protein.(2)galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [EC:2.4.1.135]"; Pfam "[Glyco_transf_43] Glycosyltransferase family 43"; CDD "Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The Scaffold001 rebuild exon 8667310 8667847 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.4"; Scaffold001 rebuild exon 8668129 8668142 . + . gene_id "RvY_03152"; transcript_id "RvY_03152.4"; Scaffold001 rebuild transcript 8669606 8670630 . - . gene_id "RvY_03153"; transcript_id "RvY_03153.1"; gene_name "(2)CENPB"; annotation "hypothetical protein."; Pfam "(1)[DDE_1] DDE superfamily endonuclease|(1)[DDE_3] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "(2)Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold001 rebuild exon 8669606 8670225 . - . gene_id "RvY_03153"; transcript_id "RvY_03153.1"; Scaffold001 rebuild exon 8670297 8670630 . - . gene_id "RvY_03153"; transcript_id "RvY_03153.1"; Scaffold001 rebuild transcript 8670079 8670630 . - . gene_id "RvY_03153"; transcript_id "RvY_03153.2"; gene_name "(2)CENPB"; annotation "hypothetical protein."; Pfam "(1)[DDE_1] DDE superfamily endonuclease|(1)[DDE_3] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "(2)Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold001 rebuild exon 8670079 8670630 . - . gene_id "RvY_03153"; transcript_id "RvY_03153.2"; Scaffold001 rebuild transcript 8673333 8673665 . - . gene_id "RvY_03154"; transcript_id "RvY_03154.1"; annotation "hypothetical protein."; Pfam "[DSHCT] DSHCT (NUC185) domain"; Scaffold001 rebuild exon 8673333 8673665 . - . gene_id "RvY_03154"; transcript_id "RvY_03154.1"; Scaffold001 rebuild transcript 8675622 8676472 . - . gene_id "RvY_03155"; transcript_id "RvY_03155.1"; gene_name "COG4581"; annotation "putative Uncharacterized helicase C550.03c"; CDD "Superfamily II RNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "YJV3_SCHPO(e-value:2.1e-32;bit-score:137.0)"; Scaffold001 rebuild exon 8675622 8675891 . - . gene_id "RvY_03155"; transcript_id "RvY_03155.1"; Scaffold001 rebuild exon 8675972 8676152 . - . gene_id "RvY_03155"; transcript_id "RvY_03155.1"; Scaffold001 rebuild exon 8676297 8676472 . - . gene_id "RvY_03155"; transcript_id "RvY_03155.1"; Scaffold001 rebuild transcript 8677388 8677723 . - . gene_id "RvY_03156"; transcript_id "RvY_03156.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8677388 8677723 . - . gene_id "RvY_03156"; transcript_id "RvY_03156.1"; Scaffold001 rebuild transcript 8677789 8678447 . - . gene_id "RvY_03157"; transcript_id "RvY_03157.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8677789 8677793 . - . gene_id "RvY_03157"; transcript_id "RvY_03157.1"; Scaffold001 rebuild exon 8678054 8678447 . - . gene_id "RvY_03157"; transcript_id "RvY_03157.1"; Scaffold001 rebuild transcript 8680060 8680389 . + . gene_id "RvY_03158"; transcript_id "RvY_03158.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8680060 8680389 . + . gene_id "RvY_03158"; transcript_id "RvY_03158.1"; Scaffold001 rebuild transcript 8680429 8680590 . - . gene_id "RvY_03159"; transcript_id "RvY_03159.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8680429 8680590 . - . gene_id "RvY_03159"; transcript_id "RvY_03159.1"; Scaffold001 rebuild transcript 8680951 8681838 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.1"; annotation "hypothetical protein."; Pfam "[zf-CCHC_3] Zinc knuckle"; Scaffold001 rebuild exon 8680951 8681044 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.1"; Scaffold001 rebuild exon 8681123 8681257 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.1"; Scaffold001 rebuild exon 8681319 8681367 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.1"; Scaffold001 rebuild exon 8681553 8681838 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.1"; Scaffold001 rebuild transcript 8680833 8681195 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.2"; annotation "hypothetical protein."; Pfam "[zf-CCHC_3] Zinc knuckle"; Scaffold001 rebuild exon 8680833 8681044 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.2"; Scaffold001 rebuild exon 8681123 8681195 . + . gene_id "RvY_03160"; transcript_id "RvY_03160.2"; Scaffold001 rebuild transcript 8684261 8687518 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; gene_name "(1)COG2319"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)FOG: WD40 repeat [General function prediction only]"; Scaffold001 rebuild exon 8684261 8684296 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8684377 8684701 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8685186 8685254 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8685330 8685398 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8685475 8685689 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8685775 8685828 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8685908 8686087 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8686350 8686464 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8686540 8686643 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8686722 8686886 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild exon 8687183 8687518 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.1"; Scaffold001 rebuild transcript 8681971 8684306 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; gene_name "(1)COG2319"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)FOG: WD40 repeat [General function prediction only]"; Scaffold001 rebuild exon 8681971 8682320 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8682551 8682747 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8682828 8682956 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8683028 8683119 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8683184 8683322 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8683394 8683476 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8683535 8683678 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8683742 8683915 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild exon 8684157 8684306 . - . gene_id "RvY_03161"; transcript_id "RvY_03161.2"; Scaffold001 rebuild transcript 8687932 8688803 . - . gene_id "RvY_03162"; transcript_id "RvY_03162.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8687932 8688075 . - . gene_id "RvY_03162"; transcript_id "RvY_03162.1"; Scaffold001 rebuild exon 8688274 8688457 . - . gene_id "RvY_03162"; transcript_id "RvY_03162.1"; Scaffold001 rebuild exon 8688667 8688803 . - . gene_id "RvY_03162"; transcript_id "RvY_03162.1"; Scaffold001 rebuild transcript 8688986 8692296 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8688986 8689285 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild exon 8689606 8689882 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild exon 8689961 8690133 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild exon 8690485 8690771 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild exon 8691219 8691333 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild exon 8691402 8691692 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild exon 8692021 8692296 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.1"; Scaffold001 rebuild transcript 8688986 8691281 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8688986 8689285 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; Scaffold001 rebuild exon 8689606 8689882 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; Scaffold001 rebuild exon 8689961 8690133 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; Scaffold001 rebuild exon 8690485 8690771 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; Scaffold001 rebuild exon 8691010 8691097 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; Scaffold001 rebuild exon 8691219 8691281 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.2"; Scaffold001 rebuild transcript 8689570 8691281 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8689570 8689882 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.3"; Scaffold001 rebuild exon 8689961 8690133 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.3"; Scaffold001 rebuild exon 8690485 8690771 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.3"; Scaffold001 rebuild exon 8691010 8691097 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.3"; Scaffold001 rebuild exon 8691219 8691281 . - . gene_id "RvY_03163"; transcript_id "RvY_03163.3"; Scaffold001 rebuild transcript 8692344 8693859 . - . gene_id "RvY_03164"; transcript_id "RvY_03164.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8692344 8692534 . - . gene_id "RvY_03164"; transcript_id "RvY_03164.1"; Scaffold001 rebuild exon 8692806 8693411 . - . gene_id "RvY_03164"; transcript_id "RvY_03164.1"; Scaffold001 rebuild exon 8693616 8693859 . - . gene_id "RvY_03164"; transcript_id "RvY_03164.1"; Scaffold001 rebuild transcript 8694703 8695706 . + . gene_id "RvY_03165"; transcript_id "RvY_03165.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8694703 8694786 . + . gene_id "RvY_03165"; transcript_id "RvY_03165.1"; Scaffold001 rebuild exon 8695010 8695115 . + . gene_id "RvY_03165"; transcript_id "RvY_03165.1"; Scaffold001 rebuild exon 8695248 8695295 . + . gene_id "RvY_03165"; transcript_id "RvY_03165.1"; Scaffold001 rebuild exon 8695423 8695706 . + . gene_id "RvY_03165"; transcript_id "RvY_03165.1"; Scaffold001 rebuild transcript 8696418 8697698 . + . gene_id "RvY_03166"; transcript_id "RvY_03166.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-"; similar_genes "(1)FUT4_HUMAN(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 8696418 8697163 . + . gene_id "RvY_03166"; transcript_id "RvY_03166.1"; Scaffold001 rebuild exon 8697245 8697698 . + . gene_id "RvY_03166"; transcript_id "RvY_03166.1"; Scaffold001 rebuild transcript 8696310 8697167 . + . gene_id "RvY_03166"; transcript_id "RvY_03166.2"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-"; similar_genes "(1)FUT4_HUMAN(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 8696310 8697167 . + . gene_id "RvY_03166"; transcript_id "RvY_03166.2"; Scaffold001 rebuild transcript 8698356 8698550 . - . gene_id "RvY_03167"; transcript_id "RvY_03167.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold001 rebuild exon 8698356 8698550 . - . gene_id "RvY_03167"; transcript_id "RvY_03167.1"; Scaffold001 rebuild transcript 8699345 8699929 . + . gene_id "RvY_03168"; transcript_id "RvY_03168.1"; annotation "hypothetical protein."; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; Scaffold001 rebuild exon 8699345 8699929 . + . gene_id "RvY_03168"; transcript_id "RvY_03168.1"; Scaffold001 rebuild transcript 8700246 8701985 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[DUF4201]"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold001 rebuild exon 8700246 8700833 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; Scaffold001 rebuild exon 8701197 8701316 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; Scaffold001 rebuild exon 8701388 8701578 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; Scaffold001 rebuild exon 8701652 8701736 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; Scaffold001 rebuild exon 8701803 8701883 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; Scaffold001 rebuild exon 8701941 8701985 . - . gene_id "RvY_03169"; transcript_id "RvY_03169.1"; Scaffold001 rebuild transcript 8702794 8704724 . + . gene_id "RvY_03170"; transcript_id "RvY_03170.1"; gene_name "NCK"; annotation "NCK adaptor protein"; Pfam "[SH3_2] Variant SH3 domain|[SH2]|[SH3_1] SH3 domain|[SH3_3] Bacterial SH3 domain"; CDD "Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites."; KO "K07365"; similar_genes "NCK1_HUMAN(e-value:1.4e-12;bit-score:71.0)"; Scaffold001 rebuild exon 8702794 8702925 . + . gene_id "RvY_03170"; transcript_id "RvY_03170.1"; Scaffold001 rebuild exon 8702982 8703260 . + . gene_id "RvY_03170"; transcript_id "RvY_03170.1"; Scaffold001 rebuild exon 8703459 8703994 . + . gene_id "RvY_03170"; transcript_id "RvY_03170.1"; Scaffold001 rebuild exon 8704328 8704724 . + . gene_id "RvY_03170"; transcript_id "RvY_03170.1"; Scaffold001 rebuild transcript 8705082 8707905 . - . gene_id "RvY_03171"; transcript_id "RvY_03171.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold001 rebuild exon 8705082 8706043 . - . gene_id "RvY_03171"; transcript_id "RvY_03171.1"; Scaffold001 rebuild exon 8706334 8706682 . - . gene_id "RvY_03171"; transcript_id "RvY_03171.1"; Scaffold001 rebuild exon 8706825 8707399 . - . gene_id "RvY_03171"; transcript_id "RvY_03171.1"; Scaffold001 rebuild exon 8707701 8707905 . - . gene_id "RvY_03171"; transcript_id "RvY_03171.1"; Scaffold001 rebuild transcript 8709582 8711014 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; annotation "hypothetical protein."; Pfam "[Telomere_Sde2] Telomere stability and silencing"; similar_genes "CA055_RAT(e-value:2.7e-11;bit-score:67.0)"; Scaffold001 rebuild exon 8709582 8709633 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; Scaffold001 rebuild exon 8709713 8709938 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; Scaffold001 rebuild exon 8710026 8710207 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; Scaffold001 rebuild exon 8710418 8710529 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; Scaffold001 rebuild exon 8710615 8710744 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; Scaffold001 rebuild exon 8710811 8711014 . - . gene_id "RvY_03172"; transcript_id "RvY_03172.1"; Scaffold001 rebuild transcript 8711494 8712816 . + . gene_id "RvY_03173"; transcript_id "RvY_03173.1"; gene_name "TGS_ThrRS_N"; annotation "hypothetical protein."; CDD "TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood."; Scaffold001 rebuild exon 8711494 8712048 . + . gene_id "RvY_03173"; transcript_id "RvY_03173.1"; Scaffold001 rebuild exon 8712301 8712816 . + . gene_id "RvY_03173"; transcript_id "RvY_03173.1"; Scaffold001 rebuild transcript 8713048 8713680 . - . gene_id "RvY_03174"; transcript_id "RvY_03174.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8713048 8713180 . - . gene_id "RvY_03174"; transcript_id "RvY_03174.1"; Scaffold001 rebuild exon 8713244 8713680 . - . gene_id "RvY_03174"; transcript_id "RvY_03174.1"; Scaffold001 rebuild transcript 8714791 8726294 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; gene_name "SNRNP200"; annotation "U5 small nuclear ribonucleoprotein 200 kDa helicase"; Pfam "[AAA_22] AAA domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[Sec63] Sec63 Brl domain|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II helicase [General function prediction only]"; EC "EC3.6.1.-"; KO "K12854"; similar_genes "U520_HUMAN(e-value:1.1e-213;bit-score:739.0)"; Scaffold001 rebuild exon 8714791 8715021 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8715373 8715451 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8715524 8715966 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8716214 8716800 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8716975 8717186 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8717260 8717534 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8717733 8717957 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8718152 8718400 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8718464 8718782 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8719035 8719475 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8719907 8720207 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8720313 8720584 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8720904 8721207 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8721707 8721884 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8722109 8722258 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8722483 8722606 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8722669 8722868 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8723080 8723250 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8723456 8723611 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8723713 8723850 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8724135 8724540 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8724798 8725072 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8725190 8725546 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8725692 8725863 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8725991 8726154 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild exon 8726250 8726294 . - . gene_id "RvY_03175"; transcript_id "RvY_03175.1"; Scaffold001 rebuild transcript 8727302 8730455 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; gene_name "eIF-37"; annotation "putative Eukaryotic translation initiation factor 3 subunit D"; Pfam "[eIF-3_zeta] Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)"; KO "K03251"; similar_genes "EIF3D_NEMVE(e-value:1.1e-50;bit-score:197.0)"; Scaffold001 rebuild exon 8727302 8727330 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8727399 8727498 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8727591 8727783 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8728106 8728245 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8728322 8728543 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8728795 8728925 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8728988 8729156 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8729228 8729512 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8729817 8729889 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8729956 8730017 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8730093 8730272 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild exon 8730327 8730455 . - . gene_id "RvY_03176"; transcript_id "RvY_03176.1"; Scaffold001 rebuild transcript 8730823 8732376 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; annotation "hypothetical protein."; Pfam "[SURF1] SURF1 family"; KO "K14998"; similar_genes "SURF1_CAEEL(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 8730823 8730927 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; Scaffold001 rebuild exon 8731021 8731086 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; Scaffold001 rebuild exon 8731289 8731419 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; Scaffold001 rebuild exon 8731508 8731687 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; Scaffold001 rebuild exon 8731938 8732173 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; Scaffold001 rebuild exon 8732228 8732376 . + . gene_id "RvY_03177"; transcript_id "RvY_03177.1"; Scaffold001 rebuild transcript 8733026 8738196 . - . gene_id "RvY_03178"; transcript_id "RvY_03178.1"; gene_name "SOX7S"; annotation "putative Transcription factor Sox-9"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; KO "K09270"; similar_genes "SOX9_XENTR(e-value:1.1e-31;bit-score:134.0)"; Scaffold001 rebuild exon 8733026 8733528 . - . gene_id "RvY_03178"; transcript_id "RvY_03178.1"; Scaffold001 rebuild exon 8733733 8734169 . - . gene_id "RvY_03178"; transcript_id "RvY_03178.1"; Scaffold001 rebuild exon 8737186 8737289 . - . gene_id "RvY_03178"; transcript_id "RvY_03178.1"; Scaffold001 rebuild exon 8737657 8738196 . - . gene_id "RvY_03178"; transcript_id "RvY_03178.1"; Scaffold001 rebuild transcript 8739481 8743245 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; gene_name "(1)ATG7(2,3)E1_like_apg7"; annotation "(1,2)putative Autophagy-related protein 7(3)hypothetical protein."; Pfam "[ThiF] ThiF family"; CDD "E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy."; KO "(1)K08337"; similar_genes "(1,2)ATG7_MOUSE(e-value:1.6e-49;bit-score:194.0)"; Scaffold001 rebuild exon 8739481 8739799 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8740203 8740462 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8740827 8741015 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8741114 8741272 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8741409 8741659 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8741936 8742149 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8742392 8742718 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8742782 8742957 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild exon 8743095 8743245 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.1"; Scaffold001 rebuild transcript 8739782 8743245 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; gene_name "(1)ATG7(2,3)E1_like_apg7"; annotation "(1,2)putative Autophagy-related protein 7(3)hypothetical protein."; Pfam "[ThiF] ThiF family"; CDD "E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy."; KO "(1)K08337"; similar_genes "(1,2)ATG7_MOUSE(e-value:1.6e-49;bit-score:194.0)"; Scaffold001 rebuild exon 8739782 8739799 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8740827 8741015 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8741114 8741272 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8741409 8741659 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8741936 8742149 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8742392 8742718 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8742782 8742957 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild exon 8743095 8743245 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.2"; Scaffold001 rebuild transcript 8742002 8743245 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.3"; gene_name "(1)ATG7(2,3)E1_like_apg7"; annotation "(1,2)putative Autophagy-related protein 7(3)hypothetical protein."; Pfam "[ThiF] ThiF family"; CDD "E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy."; KO "(1)K08337"; similar_genes "(1,2)ATG7_MOUSE(e-value:1.6e-49;bit-score:194.0)"; Scaffold001 rebuild exon 8742002 8742718 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.3"; Scaffold001 rebuild exon 8742782 8742957 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.3"; Scaffold001 rebuild exon 8743095 8743245 . - . gene_id "RvY_03179"; transcript_id "RvY_03179.3"; Scaffold001 rebuild transcript 8743845 8747700 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; annotation "hypothetical protein."; Pfam "[DUF2359] Uncharacterised conserved protein (DUF2359)"; Scaffold001 rebuild exon 8743845 8744142 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8744402 8744433 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8744496 8744573 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8744683 8744836 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8744904 8744950 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8745013 8745106 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8745198 8745277 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8745342 8745444 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8745612 8745693 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8745756 8745999 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8746162 8746434 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8746507 8746624 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8746873 8747044 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8747106 8747226 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8747441 8747508 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild exon 8747577 8747700 . + . gene_id "RvY_03180"; transcript_id "RvY_03180.1"; Scaffold001 rebuild transcript 8748225 8750550 . - . gene_id "RvY_03181"; transcript_id "RvY_03181.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold001 rebuild exon 8748225 8748445 . - . gene_id "RvY_03181"; transcript_id "RvY_03181.1"; Scaffold001 rebuild exon 8748802 8749062 . - . gene_id "RvY_03181"; transcript_id "RvY_03181.1"; Scaffold001 rebuild exon 8750292 8750421 . - . gene_id "RvY_03181"; transcript_id "RvY_03181.1"; Scaffold001 rebuild exon 8750527 8750550 . - . gene_id "RvY_03181"; transcript_id "RvY_03181.1"; Scaffold001 rebuild transcript 8755502 8760711 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8755502 8755806 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8756017 8756319 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8756684 8756775 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8756851 8756999 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8757203 8757424 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8757546 8757692 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8758125 8758327 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8758475 8758837 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8759174 8759331 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8759392 8759889 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8759970 8760085 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8760500 8760576 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild exon 8760645 8760711 . - . gene_id "RvY_03182"; transcript_id "RvY_03182.1"; Scaffold001 rebuild transcript 8761066 8772570 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; gene_name "CAD"; annotation "CAD protein"; Pfam "[Dala_Dala_lig_C] D-ala D-ala ligase C-terminus|[CPSase_sm_chain] Carbamoyl-phosphate synthase small chain, CPSase domain|[ATP-grasp]|[ATP-grasp_3] ATP-grasp domain|[MGS] MGS-like domain|[RimK] RimK-like ATP-grasp domain|[ATP-grasp_4] ATP-grasp domain|[CPSase_L_chain] Carbamoyl-phosphate synthase L chain, N-terminal domain|[GATase] Glutamine amidotransferase class-I|[OTCace_N] Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain|[CPSase_L_D3] Carbamoyl-phosphate synthetase large chain, oligomerisation domain|[CPSase_L_D2] Carbamoyl-phosphate synthase L chain, ATP binding domain|[Amidohydro_1] Amidohydrolase family|[OTCace] Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain|[Amidohydro_4] Amidohydrolase"; CDD "carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes."; EC "EC2.1.3.2|EC3.5.2.3|EC6.3.5.5"; KO "K11540"; similar_genes "PYR1_MESAU(e-value:4.9e-176;bit-score:614.0)"; Scaffold001 rebuild exon 8761066 8761189 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8761267 8761703 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8761976 8762162 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8762348 8763236 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8763596 8764151 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8764459 8764775 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8765028 8765275 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8765341 8765768 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8766149 8766469 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8766615 8766818 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8766873 8767169 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8767457 8767885 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8768086 8768223 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8768298 8768531 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8768814 8769260 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8769522 8769719 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8769890 8770268 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8770588 8770834 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8771140 8771401 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8771558 8771641 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8771742 8771800 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8771865 8772140 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild exon 8772483 8772570 . - . gene_id "RvY_03183"; transcript_id "RvY_03183.1"; Scaffold001 rebuild transcript 8773371 8774355 . + . gene_id "RvY_03184"; transcript_id "RvY_03184.1"; gene_name "DltE"; annotation "hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.1.-"; similar_genes "MKAR_USTMA(e-value:2.3e-08;bit-score:57.0)"; Scaffold001 rebuild exon 8773371 8773704 . + . gene_id "RvY_03184"; transcript_id "RvY_03184.1"; Scaffold001 rebuild exon 8773786 8773832 . + . gene_id "RvY_03184"; transcript_id "RvY_03184.1"; Scaffold001 rebuild exon 8774064 8774139 . + . gene_id "RvY_03184"; transcript_id "RvY_03184.1"; Scaffold001 rebuild exon 8774231 8774355 . + . gene_id "RvY_03184"; transcript_id "RvY_03184.1"; Scaffold001 rebuild transcript 8774748 8775603 . + . gene_id "RvY_03185"; transcript_id "RvY_03185.1"; gene_name "DltE"; annotation "hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.1.62"; similar_genes "DHB12_XENTR(e-value:3.4e-09;bit-score:60.0)"; Scaffold001 rebuild exon 8774748 8774756 . + . gene_id "RvY_03185"; transcript_id "RvY_03185.1"; Scaffold001 rebuild exon 8774829 8774951 . + . gene_id "RvY_03185"; transcript_id "RvY_03185.1"; Scaffold001 rebuild exon 8775013 8775072 . + . gene_id "RvY_03185"; transcript_id "RvY_03185.1"; Scaffold001 rebuild exon 8775149 8775250 . + . gene_id "RvY_03185"; transcript_id "RvY_03185.1"; Scaffold001 rebuild exon 8775478 8775603 . + . gene_id "RvY_03185"; transcript_id "RvY_03185.1"; Scaffold001 rebuild transcript 8778554 8779475 . - . gene_id "RvY_03186"; transcript_id "RvY_03186.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8778554 8778775 . - . gene_id "RvY_03186"; transcript_id "RvY_03186.1"; Scaffold001 rebuild exon 8779341 8779475 . - . gene_id "RvY_03186"; transcript_id "RvY_03186.1"; Scaffold001 rebuild transcript 8780117 8781988 . + . gene_id "RvY_03187"; transcript_id "RvY_03187.1"; product "HOX4 deformed"; gene_name "HOX_4"; annotation "HOX4 deformed | putative Homeotic protein deformed"; Pfam "[Homeobox]"; KO "K09304"; similar_genes "DFD_DROME(e-value:1.5e-26;bit-score:117.0)"; Scaffold001 rebuild exon 8780117 8780825 . + . gene_id "RvY_03187"; transcript_id "RvY_03187.1"; Scaffold001 rebuild exon 8781102 8781305 . + . gene_id "RvY_03187"; transcript_id "RvY_03187.1"; Scaffold001 rebuild exon 8781630 8781723 . + . gene_id "RvY_03187"; transcript_id "RvY_03187.1"; Scaffold001 rebuild exon 8781853 8781988 . + . gene_id "RvY_03187"; transcript_id "RvY_03187.1"; Scaffold001 rebuild transcript 8785323 8785538 . + . gene_id "RvY_03188"; transcript_id "RvY_03188.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8785323 8785538 . + . gene_id "RvY_03188"; transcript_id "RvY_03188.1"; Scaffold001 rebuild transcript 8785894 8787887 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; gene_name "DltE"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; similar_genes "HSDL1_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold001 rebuild exon 8785894 8786122 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8786317 8786363 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8786461 8786536 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8786594 8786707 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8786774 8786835 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8786928 8786972 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8787038 8787105 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8787186 8787235 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8787510 8787574 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8787639 8787768 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild exon 8787829 8787887 . + . gene_id "RvY_03189"; transcript_id "RvY_03189.1"; Scaffold001 rebuild transcript 8788455 8795914 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8788455 8788776 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild exon 8789144 8790218 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild exon 8790571 8791148 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild exon 8791462 8791878 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild exon 8793042 8793206 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild exon 8794063 8794435 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild exon 8795854 8795914 . + . gene_id "RvY_03190"; transcript_id "RvY_03190.1"; Scaffold001 rebuild transcript 8795927 8804031 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; gene_name "NTRK3"; annotation "NT-3 growth factor receptor"; Pfam "[I-set] Immunoglobulin I-set domain|[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[Ig_2] Immunoglobulin domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Ig_3] Immunoglobulin domain"; CDD "Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases."; EC "EC2.7.10.1"; KO "K05101"; similar_genes "NTRK3_MACFA(e-value:7.3e-54;bit-score:208.0)"; Scaffold001 rebuild exon 8795927 8796441 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8796510 8796584 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8797923 8797994 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8799948 8800016 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8800147 8800316 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8800560 8800829 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8800906 8800989 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8801592 8801786 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8802034 8802542 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8802778 8803256 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8803519 8803645 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild exon 8803810 8804031 . + . gene_id "RvY_03191"; transcript_id "RvY_03191.1"; Scaffold001 rebuild transcript 8799976 8800206 . - . gene_id "RvY_03192"; transcript_id "RvY_03192.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8799976 8800206 . - . gene_id "RvY_03192"; transcript_id "RvY_03192.1"; Scaffold001 rebuild transcript 8804385 8806611 . - . gene_id "RvY_03193"; transcript_id "RvY_03193.1"; gene_name "RINGv"; annotation "hypothetical protein."; Pfam "[RINGv] RING-variant domain"; CDD "The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C"; Scaffold001 rebuild exon 8804385 8804780 . - . gene_id "RvY_03193"; transcript_id "RvY_03193.1"; Scaffold001 rebuild exon 8805127 8805161 . - . gene_id "RvY_03193"; transcript_id "RvY_03193.1"; Scaffold001 rebuild exon 8805229 8805673 . - . gene_id "RvY_03193"; transcript_id "RvY_03193.1"; Scaffold001 rebuild exon 8805934 8806295 . - . gene_id "RvY_03193"; transcript_id "RvY_03193.1"; Scaffold001 rebuild exon 8806461 8806611 . - . gene_id "RvY_03193"; transcript_id "RvY_03193.1"; Scaffold001 rebuild transcript 8806649 8807026 . - . gene_id "RvY_03194"; transcript_id "RvY_03194.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8806649 8807026 . - . gene_id "RvY_03194"; transcript_id "RvY_03194.1"; Scaffold001 rebuild transcript 8807546 8812577 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type"; Scaffold001 rebuild exon 8807546 8807546 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild exon 8807611 8808077 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild exon 8808212 8808754 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild exon 8810282 8811015 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild exon 8811194 8811475 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild exon 8811673 8812085 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild exon 8812366 8812577 . - . gene_id "RvY_03195"; transcript_id "RvY_03195.1"; Scaffold001 rebuild transcript 8818151 8820853 . - . gene_id "RvY_03196"; transcript_id "RvY_03196.1"; gene_name "DGK"; annotation "diacylglycerol kinase [EC:2.7.1.107]"; Pfam "[DAGK_cat] Diacylglycerol kinase catalytic domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[DAGK_acc] Diacylglycerol kinase accessory domain"; CDD "Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known."; EC "EC2.7.1.107"; KO "K00901"; similar_genes "DGKZ_RAT(e-value:4.0e-12;bit-score:69.0)"; Scaffold001 rebuild exon 8818151 8818412 . - . gene_id "RvY_03196"; transcript_id "RvY_03196.1"; Scaffold001 rebuild exon 8818759 8819215 . - . gene_id "RvY_03196"; transcript_id "RvY_03196.1"; Scaffold001 rebuild exon 8819607 8819966 . - . gene_id "RvY_03196"; transcript_id "RvY_03196.1"; Scaffold001 rebuild exon 8820025 8820198 . - . gene_id "RvY_03196"; transcript_id "RvY_03196.1"; Scaffold001 rebuild exon 8820439 8820853 . - . gene_id "RvY_03196"; transcript_id "RvY_03196.1"; Scaffold001 rebuild transcript 8820797 8820994 . + . gene_id "RvY_03197"; transcript_id "RvY_03197.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8820797 8820994 . + . gene_id "RvY_03197"; transcript_id "RvY_03197.1"; Scaffold001 rebuild transcript 8825961 8830733 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold001 rebuild exon 8825961 8826063 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8826340 8826566 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8826651 8826809 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8827260 8827361 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8827501 8828086 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8828363 8828426 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8828569 8828691 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8828785 8828931 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8829225 8829488 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8830109 8830571 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild exon 8830641 8830733 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.1"; Scaffold001 rebuild transcript 8825961 8828935 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold001 rebuild exon 8825961 8826063 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8826340 8826566 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8826651 8826809 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8827260 8827361 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8827501 8828086 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8828363 8828426 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8828569 8828691 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild exon 8828785 8828935 . + . gene_id "RvY_03198"; transcript_id "RvY_03198.2"; Scaffold001 rebuild transcript 8831095 8833337 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold001 rebuild exon 8831095 8831182 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8831251 8831636 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8831907 8831998 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8832067 8832194 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8832271 8832335 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8832422 8832825 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8832894 8833190 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild exon 8833265 8833337 . - . gene_id "RvY_03199"; transcript_id "RvY_03199.1"; Scaffold001 rebuild transcript 8834405 8835074 . + . gene_id "RvY_03200"; transcript_id "RvY_03200.1"; annotation "hypothetical protein."; Pfam "[zf-Tim10_DDP] Tim10/DDP family zinc finger"; Scaffold001 rebuild exon 8834405 8834497 . + . gene_id "RvY_03200"; transcript_id "RvY_03200.1"; Scaffold001 rebuild exon 8834596 8834664 . + . gene_id "RvY_03200"; transcript_id "RvY_03200.1"; Scaffold001 rebuild exon 8834979 8835074 . + . gene_id "RvY_03200"; transcript_id "RvY_03200.1"; Scaffold001 rebuild transcript 8835384 8836482 . - . gene_id "RvY_03201"; transcript_id "RvY_03201.1"; gene_name "adk"; annotation "putative Adenylate kinase isoenzyme 1"; Pfam "[ADK] Adenylate kinase|[AAA_17] AAA domain"; CDD "adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351."; EC "EC2.7.4.3"; KO "K00939"; similar_genes "KAD1_RABIT(e-value:3.1e-29;bit-score:126.0)"; Scaffold001 rebuild exon 8835384 8835570 . - . gene_id "RvY_03201"; transcript_id "RvY_03201.1"; Scaffold001 rebuild exon 8835635 8835843 . - . gene_id "RvY_03201"; transcript_id "RvY_03201.1"; Scaffold001 rebuild exon 8836073 8836236 . - . gene_id "RvY_03201"; transcript_id "RvY_03201.1"; Scaffold001 rebuild exon 8836296 8836482 . - . gene_id "RvY_03201"; transcript_id "RvY_03201.1"; Scaffold001 rebuild transcript 8837066 8837392 . - . gene_id "RvY_03202"; transcript_id "RvY_03202.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8837066 8837392 . - . gene_id "RvY_03202"; transcript_id "RvY_03202.1"; Scaffold001 rebuild transcript 8839275 8840975 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.1"; annotation "hypothetical protein."; Pfam "[TB2_DP1_HVA22] TB2/DP1, HVA22 family"; similar_genes "(1)REEP4_PONAB(e-value:2.4e-14;bit-score:77.0)(2)REEP1_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold001 rebuild exon 8839275 8839474 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.1"; Scaffold001 rebuild exon 8840525 8840975 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.1"; Scaffold001 rebuild transcript 8837495 8840975 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.2"; annotation "hypothetical protein."; Pfam "[TB2_DP1_HVA22] TB2/DP1, HVA22 family"; similar_genes "(1)REEP4_PONAB(e-value:2.4e-14;bit-score:77.0)(2)REEP1_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold001 rebuild exon 8837495 8837526 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.2"; Scaffold001 rebuild exon 8839322 8839474 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.2"; Scaffold001 rebuild exon 8840525 8840975 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.2"; Scaffold001 rebuild transcript 8840767 8841147 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.3"; annotation "hypothetical protein."; Pfam "[TB2_DP1_HVA22] TB2/DP1, HVA22 family"; similar_genes "(1)REEP4_PONAB(e-value:2.4e-14;bit-score:77.0)(2)REEP1_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold001 rebuild exon 8840767 8841147 . + . gene_id "RvY_03203"; transcript_id "RvY_03203.3"; Scaffold001 rebuild transcript 8837636 8837821 . - . gene_id "RvY_03204"; transcript_id "RvY_03204.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8837636 8837821 . - . gene_id "RvY_03204"; transcript_id "RvY_03204.1"; Scaffold001 rebuild transcript 8839133 8839291 . - . gene_id "RvY_03205"; transcript_id "RvY_03205.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8839133 8839291 . - . gene_id "RvY_03205"; transcript_id "RvY_03205.1"; Scaffold001 rebuild transcript 8841325 8841498 . - . gene_id "RvY_03206"; transcript_id "RvY_03206.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8841325 8841498 . - . gene_id "RvY_03206"; transcript_id "RvY_03206.1"; Scaffold001 rebuild transcript 8846310 8847856 . + . gene_id "RvY_03207"; transcript_id "RvY_03207.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[PrmA] Ribosomal protein L11 methyltransferase (PrmA)"; EC "EC2.1.1.-"; similar_genes "ANM6_ARATH(e-value:3.4e-09;bit-score:60.0)"; Scaffold001 rebuild exon 8846310 8846535 . + . gene_id "RvY_03207"; transcript_id "RvY_03207.1"; Scaffold001 rebuild exon 8846674 8847108 . + . gene_id "RvY_03207"; transcript_id "RvY_03207.1"; Scaffold001 rebuild exon 8847186 8847322 . + . gene_id "RvY_03207"; transcript_id "RvY_03207.1"; Scaffold001 rebuild exon 8847491 8847856 . + . gene_id "RvY_03207"; transcript_id "RvY_03207.1"; Scaffold001 rebuild transcript 8848149 8848762 . - . gene_id "RvY_03208"; transcript_id "RvY_03208.1"; annotation "hypothetical protein."; Pfam "[GCN5L1] GCN5-like protein 1 (GCN5L1)"; Scaffold001 rebuild exon 8848149 8848434 . - . gene_id "RvY_03208"; transcript_id "RvY_03208.1"; Scaffold001 rebuild exon 8848549 8848621 . - . gene_id "RvY_03208"; transcript_id "RvY_03208.1"; Scaffold001 rebuild exon 8848702 8848762 . - . gene_id "RvY_03208"; transcript_id "RvY_03208.1"; Scaffold001 rebuild transcript 8849067 8849441 . + . gene_id "RvY_03209"; transcript_id "RvY_03209.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8849067 8849328 . + . gene_id "RvY_03209"; transcript_id "RvY_03209.1"; Scaffold001 rebuild exon 8849401 8849441 . + . gene_id "RvY_03209"; transcript_id "RvY_03209.1"; Scaffold001 rebuild transcript 8849469 8851603 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; gene_name "APH1"; annotation "anterior pharynx defective 1"; Pfam "[Aph-1] Aph-1 protein"; KO "K06172"; similar_genes "APH1B_MOUSE(e-value:1.2e-11;bit-score:68.0)"; Scaffold001 rebuild exon 8849469 8849581 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; Scaffold001 rebuild exon 8850262 8850405 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; Scaffold001 rebuild exon 8850521 8850609 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; Scaffold001 rebuild exon 8850693 8850818 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; Scaffold001 rebuild exon 8850908 8851035 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; Scaffold001 rebuild exon 8851397 8851603 . + . gene_id "RvY_03210"; transcript_id "RvY_03210.1"; Scaffold001 rebuild transcript 8852135 8853440 . - . gene_id "RvY_03211"; transcript_id "RvY_03211.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8852135 8852151 . - . gene_id "RvY_03211"; transcript_id "RvY_03211.1"; Scaffold001 rebuild exon 8852392 8852778 . - . gene_id "RvY_03211"; transcript_id "RvY_03211.1"; Scaffold001 rebuild exon 8853009 8853161 . - . gene_id "RvY_03211"; transcript_id "RvY_03211.1"; Scaffold001 rebuild exon 8853284 8853440 . - . gene_id "RvY_03211"; transcript_id "RvY_03211.1"; Scaffold001 rebuild transcript 8853908 8855849 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; gene_name "COG2055"; annotation "hypothetical protein."; Pfam "[Ldh_2] Malate/L-lactate dehydrogenase"; CDD "Malate/L-lactate dehydrogenases [Energy production and conversion]"; EC "EC1.1.1.37"; similar_genes "MDH_PYRHO(e-value:1.6e-17;bit-score:87.0)"; Scaffold001 rebuild exon 8853908 8854214 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8854289 8854396 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8854555 8854635 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8854698 8854813 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8855025 8855244 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8855313 8855446 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8855525 8855620 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild exon 8855697 8855849 . + . gene_id "RvY_03212"; transcript_id "RvY_03212.1"; Scaffold001 rebuild transcript 8856099 8857322 . - . gene_id "RvY_03213"; transcript_id "RvY_03213.1"; gene_name "GM2A"; annotation "ganglioside GM2 activator"; CDD "GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family."; KO "K12383"; Scaffold001 rebuild exon 8856099 8856352 . - . gene_id "RvY_03213"; transcript_id "RvY_03213.1"; Scaffold001 rebuild exon 8856429 8856492 . - . gene_id "RvY_03213"; transcript_id "RvY_03213.1"; Scaffold001 rebuild exon 8856559 8856617 . - . gene_id "RvY_03213"; transcript_id "RvY_03213.1"; Scaffold001 rebuild exon 8856704 8856821 . - . gene_id "RvY_03213"; transcript_id "RvY_03213.1"; Scaffold001 rebuild exon 8857125 8857322 . - . gene_id "RvY_03213"; transcript_id "RvY_03213.1"; Scaffold001 rebuild transcript 8857820 8858855 . + . gene_id "RvY_03214"; transcript_id "RvY_03214.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8857820 8857940 . + . gene_id "RvY_03214"; transcript_id "RvY_03214.1"; Scaffold001 rebuild exon 8858021 8858138 . + . gene_id "RvY_03214"; transcript_id "RvY_03214.1"; Scaffold001 rebuild exon 8858302 8858489 . + . gene_id "RvY_03214"; transcript_id "RvY_03214.1"; Scaffold001 rebuild exon 8858560 8858695 . + . gene_id "RvY_03214"; transcript_id "RvY_03214.1"; Scaffold001 rebuild exon 8858777 8858855 . + . gene_id "RvY_03214"; transcript_id "RvY_03214.1"; Scaffold001 rebuild transcript 8859315 8860743 . + . gene_id "RvY_03215"; transcript_id "RvY_03215.1"; annotation "putative Mitochondrial chaperone BCS1"; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)|[BCS1_N] BCS1 N terminal"; similar_genes "BCS1_YEAST(e-value:2.4e-31;bit-score:133.0)"; Scaffold001 rebuild exon 8859315 8859799 . + . gene_id "RvY_03215"; transcript_id "RvY_03215.1"; Scaffold001 rebuild exon 8860057 8860532 . + . gene_id "RvY_03215"; transcript_id "RvY_03215.1"; Scaffold001 rebuild exon 8860601 8860743 . + . gene_id "RvY_03215"; transcript_id "RvY_03215.1"; Scaffold001 rebuild transcript 8861704 8864250 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold001 rebuild exon 8861704 8862004 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; Scaffold001 rebuild exon 8862439 8862582 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; Scaffold001 rebuild exon 8862680 8862838 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; Scaffold001 rebuild exon 8863104 8863564 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; Scaffold001 rebuild exon 8863832 8863949 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; Scaffold001 rebuild exon 8864027 8864250 . + . gene_id "RvY_03216"; transcript_id "RvY_03216.1"; Scaffold001 rebuild transcript 8864608 8865976 . - . gene_id "RvY_03217"; transcript_id "RvY_03217.1"; gene_name "tatD"; annotation "TatD DNase family protein [EC:3.1.21.-]"; Pfam "[TatD_DNase] TatD related DNase"; CDD "TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity."; EC "EC3.1.21.-"; KO "K03424"; Scaffold001 rebuild exon 8864608 8864930 . - . gene_id "RvY_03217"; transcript_id "RvY_03217.1"; Scaffold001 rebuild exon 8865027 8865091 . - . gene_id "RvY_03217"; transcript_id "RvY_03217.1"; Scaffold001 rebuild exon 8865171 8865360 . - . gene_id "RvY_03217"; transcript_id "RvY_03217.1"; Scaffold001 rebuild exon 8865441 8865578 . - . gene_id "RvY_03217"; transcript_id "RvY_03217.1"; Scaffold001 rebuild exon 8865709 8865976 . - . gene_id "RvY_03217"; transcript_id "RvY_03217.1"; Scaffold001 rebuild transcript 8866677 8868269 . + . gene_id "RvY_03218"; transcript_id "RvY_03218.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold001 rebuild exon 8866677 8866852 . + . gene_id "RvY_03218"; transcript_id "RvY_03218.1"; Scaffold001 rebuild exon 8867043 8867431 . + . gene_id "RvY_03218"; transcript_id "RvY_03218.1"; Scaffold001 rebuild exon 8867671 8868269 . + . gene_id "RvY_03218"; transcript_id "RvY_03218.1"; Scaffold001 rebuild transcript 8871535 8874035 . + . gene_id "RvY_03219"; transcript_id "RvY_03219.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8871535 8871581 . + . gene_id "RvY_03219"; transcript_id "RvY_03219.1"; Scaffold001 rebuild exon 8871854 8872082 . + . gene_id "RvY_03219"; transcript_id "RvY_03219.1"; Scaffold001 rebuild exon 8872303 8872660 . + . gene_id "RvY_03219"; transcript_id "RvY_03219.1"; Scaffold001 rebuild exon 8872904 8873397 . + . gene_id "RvY_03219"; transcript_id "RvY_03219.1"; Scaffold001 rebuild exon 8873628 8874035 . + . gene_id "RvY_03219"; transcript_id "RvY_03219.1"; Scaffold001 rebuild transcript 8874314 8876259 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8874314 8874405 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; Scaffold001 rebuild exon 8874758 8874893 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; Scaffold001 rebuild exon 8874962 8875100 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; Scaffold001 rebuild exon 8875315 8875610 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; Scaffold001 rebuild exon 8875679 8875819 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; Scaffold001 rebuild exon 8876005 8876259 . - . gene_id "RvY_03220"; transcript_id "RvY_03220.1"; Scaffold001 rebuild transcript 8877126 8880556 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; gene_name "SF1"; annotation "Splicing factor 1"; Pfam "[KH_3] KH domain|[KH_1] KH domain"; CDD "Splicing factor (branch point binding protein) [RNA processing and modification]"; KO "K13095"; similar_genes "SF01_HUMAN(e-value:3.8e-91;bit-score:332.0)"; Scaffold001 rebuild exon 8877126 8877408 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8877591 8877803 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8878208 8878283 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8878525 8878677 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8878736 8878856 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8878922 8879074 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8879338 8879634 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8879835 8880102 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8880200 8880348 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild exon 8880410 8880556 . + . gene_id "RvY_03221"; transcript_id "RvY_03221.1"; Scaffold001 rebuild transcript 8881455 8884157 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; gene_name "(1)ZnMc_astacin_like(2)ZnMc_hatching_enzyme"; annotation "hypothetical protein."; Pfam "[Hemopexin]|[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 8881455 8881743 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild exon 8881829 8881964 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild exon 8882243 8882457 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild exon 8882513 8882755 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild exon 8882825 8883345 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild exon 8883418 8883553 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild exon 8883835 8884157 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.1"; Scaffold001 rebuild transcript 8881861 8884157 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; gene_name "(1)ZnMc_astacin_like(2)ZnMc_hatching_enzyme"; annotation "hypothetical protein."; Pfam "[Hemopexin]|[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold001 rebuild exon 8881861 8881964 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; Scaffold001 rebuild exon 8882243 8882457 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; Scaffold001 rebuild exon 8882513 8882755 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; Scaffold001 rebuild exon 8882825 8883345 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; Scaffold001 rebuild exon 8883418 8883553 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; Scaffold001 rebuild exon 8883835 8884157 . + . gene_id "RvY_03222"; transcript_id "RvY_03222.2"; Scaffold001 rebuild transcript 8884576 8885287 . - . gene_id "RvY_03223"; transcript_id "RvY_03223.1"; gene_name "MAP1LC"; annotation "putative Microtubule-associated proteins 1A/1B light chain 3A"; Pfam "[APG12] Ubiquitin-like autophagy protein Apg12|[Atg8] Autophagy protein Atg8 ubiquitin like"; CDD "GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation."; KO "K10435"; similar_genes "MLP3A_BOVIN(e-value:1.3e-36;bit-score:151.0)"; Scaffold001 rebuild exon 8884576 8884750 . - . gene_id "RvY_03223"; transcript_id "RvY_03223.1"; Scaffold001 rebuild exon 8885079 8885287 . - . gene_id "RvY_03223"; transcript_id "RvY_03223.1"; Scaffold001 rebuild transcript 8886262 8887674 . + . gene_id "RvY_03224"; transcript_id "RvY_03224.1"; annotation "hypothetical protein."; Pfam "[F-box-like]"; Scaffold001 rebuild exon 8886262 8886917 . + . gene_id "RvY_03224"; transcript_id "RvY_03224.1"; Scaffold001 rebuild exon 8886999 8887674 . + . gene_id "RvY_03224"; transcript_id "RvY_03224.1"; Scaffold001 rebuild transcript 8888016 8888375 . + . gene_id "RvY_03225"; transcript_id "RvY_03225.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8888016 8888220 . + . gene_id "RvY_03225"; transcript_id "RvY_03225.1"; Scaffold001 rebuild exon 8888293 8888375 . + . gene_id "RvY_03225"; transcript_id "RvY_03225.1"; Scaffold001 rebuild transcript 8889471 8894506 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[SET]|[Ank_2] Ankyrin repeats (3 copies)|[Pre-SET] Pre-SET motif|[Ank_5] Ankyrin repeats (many copies)"; Scaffold001 rebuild exon 8889471 8889576 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8889654 8889782 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8890001 8890062 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8890125 8890200 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8890323 8890409 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8890499 8890608 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8890734 8890941 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8891240 8891452 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8891523 8891752 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8892030 8892272 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8892340 8892511 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8892589 8892765 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8892856 8893049 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8893113 8893563 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8893919 8894375 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild exon 8894440 8894506 . - . gene_id "RvY_03226"; transcript_id "RvY_03226.1"; Scaffold001 rebuild transcript 8897948 8899905 . - . gene_id "RvY_03227"; transcript_id "RvY_03227.1"; gene_name "BCS1"; annotation "putative Probable mitochondrial chaperone BCS1-A"; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)|[BCS1_N] BCS1 N terminal"; KO "K08900"; similar_genes "BCS1A_DICDI(e-value:9.1e-29;bit-score:125.0)"; Scaffold001 rebuild exon 8897948 8898426 . - . gene_id "RvY_03227"; transcript_id "RvY_03227.1"; Scaffold001 rebuild exon 8898487 8898540 . - . gene_id "RvY_03227"; transcript_id "RvY_03227.1"; Scaffold001 rebuild exon 8898795 8899267 . - . gene_id "RvY_03227"; transcript_id "RvY_03227.1"; Scaffold001 rebuild exon 8899421 8899905 . - . gene_id "RvY_03227"; transcript_id "RvY_03227.1"; Scaffold001 rebuild transcript 8900880 8901588 . + . gene_id "RvY_03228"; transcript_id "RvY_03228.1"; gene_name "RABL5"; annotation "Rab-like protein 5"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "GTPase SAR1 and related small G proteins [General function prediction only]"; KO "K07935"; Scaffold001 rebuild exon 8900880 8901029 . + . gene_id "RvY_03228"; transcript_id "RvY_03228.1"; Scaffold001 rebuild exon 8901091 8901409 . + . gene_id "RvY_03228"; transcript_id "RvY_03228.1"; Scaffold001 rebuild exon 8901494 8901588 . + . gene_id "RvY_03228"; transcript_id "RvY_03228.1"; Scaffold001 rebuild transcript 8901715 8902633 . - . gene_id "RvY_03229"; transcript_id "RvY_03229.1"; gene_name "SPRY"; annotation "hypothetical protein."; Pfam "[SPRY]"; CDD "Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues."; Scaffold001 rebuild exon 8901715 8901821 . - . gene_id "RvY_03229"; transcript_id "RvY_03229.1"; Scaffold001 rebuild exon 8901897 8901993 . - . gene_id "RvY_03229"; transcript_id "RvY_03229.1"; Scaffold001 rebuild exon 8902076 8902353 . - . gene_id "RvY_03229"; transcript_id "RvY_03229.1"; Scaffold001 rebuild exon 8902516 8902633 . - . gene_id "RvY_03229"; transcript_id "RvY_03229.1"; Scaffold001 rebuild transcript 8903119 8905126 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; gene_name "COX15"; annotation "putative Cytochrome c oxidase assembly protein COX15 homolog"; Pfam "[COX15-CtaA] Cytochrome oxidase assembly protein"; CDD "cytochrome c oxidase assembly protein; Provisional"; KO "K02259"; similar_genes "COX15_MOUSE(e-value:1.4e-46;bit-score:184.0)"; Scaffold001 rebuild exon 8903119 8903166 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; Scaffold001 rebuild exon 8903281 8903459 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; Scaffold001 rebuild exon 8903758 8903880 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; Scaffold001 rebuild exon 8903972 8904158 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; Scaffold001 rebuild exon 8904220 8904472 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; Scaffold001 rebuild exon 8904726 8905126 . + . gene_id "RvY_03230"; transcript_id "RvY_03230.1"; Scaffold001 rebuild transcript 8905665 8906613 . + . gene_id "RvY_03231"; transcript_id "RvY_03231.1"; gene_name "COG5128"; annotation "putative Trafficking protein particle complex subunit 5"; Pfam "[TRAPP] Transport protein particle (TRAPP) component"; CDD "Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]"; similar_genes "TPPC5_CHICK(e-value:6.8e-27;bit-score:118.0)"; Scaffold001 rebuild exon 8905665 8905785 . + . gene_id "RvY_03231"; transcript_id "RvY_03231.1"; Scaffold001 rebuild exon 8905855 8906074 . + . gene_id "RvY_03231"; transcript_id "RvY_03231.1"; Scaffold001 rebuild exon 8906325 8906613 . + . gene_id "RvY_03231"; transcript_id "RvY_03231.1"; Scaffold001 rebuild transcript 8907331 8907726 . + . gene_id "RvY_03232"; transcript_id "RvY_03232.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8907331 8907726 . + . gene_id "RvY_03232"; transcript_id "RvY_03232.1"; Scaffold001 rebuild transcript 8912829 8916947 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; gene_name "NFE2L1_3"; annotation "nuclear factor erythroid 2-related factor 1/3"; Pfam "[bZIP_Maf] bZIP Maf transcription factor"; CDD "basic region leucin zipper."; KO "K09040"; Scaffold001 rebuild exon 8912829 8913260 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8913519 8913738 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8913804 8914069 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8914142 8914253 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8914334 8914564 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8914682 8915145 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8916057 8916329 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild exon 8916657 8916947 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.1"; Scaffold001 rebuild transcript 8909469 8916947 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; gene_name "NFE2L1_3"; annotation "nuclear factor erythroid 2-related factor 1/3"; Pfam "[bZIP_Maf] bZIP Maf transcription factor"; CDD "basic region leucin zipper."; KO "K09040"; Scaffold001 rebuild exon 8909469 8909555 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8913519 8913738 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8913804 8914069 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8914142 8914253 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8914334 8914564 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8914682 8915145 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8916057 8916329 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild exon 8916657 8916947 . + . gene_id "RvY_03233"; transcript_id "RvY_03233.2"; Scaffold001 rebuild transcript 8917733 8921728 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; gene_name "SMARCC"; annotation "putative SWI/SNF complex subunit SMARCC2"; Pfam "[Myb_DNA-binding] Myb-like DNA-binding domain|[Myb_DNA-bind_6] Myb-like DNA-binding domain|[SWIRM]"; CDD "RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]"; KO "K11649"; similar_genes "SMRC2_MOUSE(e-value:7.0e-48;bit-score:188.0)"; Scaffold001 rebuild exon 8917733 8917803 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8917862 8918290 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8918351 8918575 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8918819 8919209 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8919276 8919410 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8919553 8919788 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8919860 8920018 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8920097 8920219 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8920368 8920551 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8920619 8921218 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8921329 8921548 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild exon 8921616 8921728 . - . gene_id "RvY_03234"; transcript_id "RvY_03234.1"; Scaffold001 rebuild transcript 8922233 8924537 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; gene_name "crvDNA_42K"; annotation "putative Proliferation-associated protein 2G4"; Pfam "[Peptidase_M24] Metallopeptidase family M24"; CDD "42K curved DNA binding protein. Proteins identified by this HMM have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein."; similar_genes "PA2G4_MOUSE(e-value:3.2e-33;bit-score:139.0)"; Scaffold001 rebuild exon 8922233 8922338 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8922526 8922654 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8922731 8922836 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8922909 8922978 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8923058 8923150 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8923257 8923399 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8923459 8923616 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8923681 8923955 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild exon 8924337 8924537 . + . gene_id "RvY_03235"; transcript_id "RvY_03235.1"; Scaffold001 rebuild transcript 8925408 8928026 . + . gene_id "RvY_03236"; transcript_id "RvY_03236.1"; gene_name "pdxK"; annotation "pyridoxine kinase [EC:2.7.1.35]"; Pfam "[PfkB] pfkB family carbohydrate kinase|[2OG-FeII_Oxy_2] 2OG-Fe(II) oxygenase superfamily|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily|[Phos_pyr_kin] Phosphomethylpyrimidine kinase"; CDD "Pyridoxal kinase plays a key role in the synthesis of the Scaffold001 rebuild exon 8925408 8925611 . + . gene_id "RvY_03236"; transcript_id "RvY_03236.1"; Scaffold001 rebuild exon 8925704 8926018 . + . gene_id "RvY_03236"; transcript_id "RvY_03236.1"; Scaffold001 rebuild exon 8926224 8927426 . + . gene_id "RvY_03236"; transcript_id "RvY_03236.1"; Scaffold001 rebuild exon 8927757 8928026 . + . gene_id "RvY_03236"; transcript_id "RvY_03236.1"; Scaffold001 rebuild transcript 8929251 8931501 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; gene_name "DNASE1"; annotation "deoxyribonuclease-1 [EC:3.1.21.1]"; CDD "deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus."; EC "EC3.1.21.1"; KO "K11994"; Scaffold001 rebuild exon 8929251 8930411 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; Scaffold001 rebuild exon 8930499 8930674 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; Scaffold001 rebuild exon 8930731 8930962 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; Scaffold001 rebuild exon 8931028 8931182 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; Scaffold001 rebuild exon 8931249 8931345 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; Scaffold001 rebuild exon 8931454 8931501 . + . gene_id "RvY_03237"; transcript_id "RvY_03237.1"; Scaffold001 rebuild transcript 8932482 8937448 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; gene_name "rne"; annotation "hypothetical protein."; CDD "ribonuclease E; Reviewed"; similar_genes "MUC1_XENLA(e-value:1.5e-20;bit-score:97.0)"; Scaffold001 rebuild exon 8932482 8932535 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8932646 8932896 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8932958 8933087 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8933160 8933380 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8933454 8933622 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8933684 8933943 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8934006 8934162 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8934246 8934421 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild exon 8934496 8937448 . - . gene_id "RvY_03238"; transcript_id "RvY_03238.1"; Scaffold001 rebuild transcript 8940168 8946025 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; gene_name "PRK08026"; annotation "hypothetical protein."; CDD "flagellin; Validated"; similar_genes "MUC1_XENLA(e-value:1.1e-20;bit-score:98.0)"; Scaffold001 rebuild exon 8940168 8942125 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8942715 8942841 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8942956 8943333 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8943405 8943525 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8943610 8943700 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8943773 8943908 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8943972 8944358 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8944430 8944550 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8944615 8944705 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8944773 8944926 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8944997 8945377 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8945565 8945685 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8945753 8945843 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild exon 8945911 8946025 . - . gene_id "RvY_03239"; transcript_id "RvY_03239.1"; Scaffold001 rebuild transcript 8947914 8950464 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; gene_name "SLC2A3"; annotation "putative Solute carrier family 2, facilitated glucose transporter member 5"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; KO "K08142"; similar_genes "GTR5_BOVIN(e-value:3.7e-36;bit-score:149.0)"; Scaffold001 rebuild exon 8947914 8947946 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8948018 8948116 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8948212 8948444 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8948516 8948640 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8948846 8949124 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8949192 8949379 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8949454 8949614 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8949717 8949771 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8949855 8949969 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8950029 8950156 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild exon 8950246 8950464 . + . gene_id "RvY_03240"; transcript_id "RvY_03240.1"; Scaffold001 rebuild transcript 8950509 8952513 . - . gene_id "RvY_03241"; transcript_id "RvY_03241.1"; gene_name "BACK"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; CDD "BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues."; Scaffold001 rebuild exon 8950509 8951573 . - . gene_id "RvY_03241"; transcript_id "RvY_03241.1"; Scaffold001 rebuild exon 8951902 8952513 . - . gene_id "RvY_03241"; transcript_id "RvY_03241.1"; Scaffold001 rebuild transcript 8952823 8954293 . - . gene_id "RvY_03242"; transcript_id "RvY_03242.1"; gene_name "NTF2"; annotation "hypothetical protein."; Pfam "[NTF2] Nuclear transport factor 2 (NTF2) domain"; CDD "Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins."; KO "K14285"; Scaffold001 rebuild exon 8952823 8952889 . - . gene_id "RvY_03242"; transcript_id "RvY_03242.1"; Scaffold001 rebuild exon 8952957 8953143 . - . gene_id "RvY_03242"; transcript_id "RvY_03242.1"; Scaffold001 rebuild exon 8953215 8953359 . - . gene_id "RvY_03242"; transcript_id "RvY_03242.1"; Scaffold001 rebuild exon 8953488 8953723 . - . gene_id "RvY_03242"; transcript_id "RvY_03242.1"; Scaffold001 rebuild exon 8953912 8954293 . - . gene_id "RvY_03242"; transcript_id "RvY_03242.1"; Scaffold001 rebuild transcript 8954137 8955671 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; gene_name "(1)FUSIP1"; annotation "(1)FUS-interacting serine-arginine-rich protein 1(2)hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1)RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 8954137 8954240 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; Scaffold001 rebuild exon 8954310 8954374 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; Scaffold001 rebuild exon 8954454 8954493 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; Scaffold001 rebuild exon 8954933 8955036 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; Scaffold001 rebuild exon 8955094 8955268 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; Scaffold001 rebuild exon 8955494 8955671 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.1"; Scaffold001 rebuild transcript 8955142 8955825 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.2"; gene_name "(1)FUSIP1"; annotation "(1)FUS-interacting serine-arginine-rich protein 1(2)hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1)RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 8955142 8955268 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.2"; Scaffold001 rebuild exon 8955494 8955825 . + . gene_id "RvY_03243"; transcript_id "RvY_03243.2"; Scaffold001 rebuild transcript 8956686 8961593 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; annotation "hypothetical protein."; Pfam "[M_domain] M domain of GW182"; Scaffold001 rebuild exon 8956686 8956981 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8957240 8957590 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8957873 8958057 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8958131 8958309 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8958597 8959001 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8959270 8959338 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8959400 8959753 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8959816 8959976 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8960037 8960376 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8960627 8960988 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild exon 8961296 8961593 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.1"; Scaffold001 rebuild transcript 8958127 8961593 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; annotation "hypothetical protein."; Pfam "[M_domain] M domain of GW182"; Scaffold001 rebuild exon 8958127 8958309 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8958597 8959001 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8959270 8959338 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8959400 8959753 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8959816 8959976 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8960037 8960376 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8960627 8960988 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild exon 8961296 8961593 . - . gene_id "RvY_03244"; transcript_id "RvY_03244.2"; Scaffold001 rebuild transcript 8962037 8965228 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; gene_name "NCSTN"; annotation "nicastrin"; Pfam "[Nicastrin]"; CDD "Nicastrin. Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesized in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin). A region featured in this family has a fold similar to human transferrin receptor (TfR) and a bacterial aminopeptidase. It is implicated in the pathogenesis of Alzheimer's disease."; KO "K06171"; Scaffold001 rebuild exon 8962037 8962112 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8962254 8962352 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8962466 8962598 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8962670 8962910 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8962983 8963130 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8963210 8963322 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8963396 8963545 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8963639 8963866 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8963936 8964108 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8964289 8964469 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8964526 8964777 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8964840 8964957 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild exon 8965026 8965228 . + . gene_id "RvY_03245"; transcript_id "RvY_03245.1"; Scaffold001 rebuild transcript 8965638 8967943 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; gene_name "HOX"; annotation "hypothetical protein."; Pfam "[Homeobox_KN] Homeobox KN domain|[Homeobox]"; CDD "Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes"; similar_genes "PKNX1_MOUSE(e-value:8.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 8965638 8966004 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; Scaffold001 rebuild exon 8966383 8966459 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; Scaffold001 rebuild exon 8966554 8966735 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; Scaffold001 rebuild exon 8967004 8967340 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; Scaffold001 rebuild exon 8967576 8967753 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; Scaffold001 rebuild exon 8967834 8967943 . - . gene_id "RvY_03246"; transcript_id "RvY_03246.1"; Scaffold001 rebuild transcript 8968103 8969327 . + . gene_id "RvY_03247"; transcript_id "RvY_03247.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8968103 8968372 . + . gene_id "RvY_03247"; transcript_id "RvY_03247.1"; Scaffold001 rebuild exon 8969211 8969327 . + . gene_id "RvY_03247"; transcript_id "RvY_03247.1"; Scaffold001 rebuild transcript 8970393 8975255 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; gene_name "EPC"; annotation "enhancer of polycomb-like protein"; Pfam "[EPL1] Enhancer of polycomb-like"; KO "K11322"; similar_genes "EPC1_MOUSE(e-value:2.0e-09;bit-score:60.0)"; Scaffold001 rebuild exon 8970393 8970554 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8970849 8971014 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8971083 8971228 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8971298 8971393 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8971459 8971569 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8971630 8971980 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8972291 8972518 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8972584 8972747 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8972871 8973143 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8973421 8973727 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8973966 8974524 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild exon 8974738 8975255 . + . gene_id "RvY_03248"; transcript_id "RvY_03248.1"; Scaffold001 rebuild transcript 8976261 8978748 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8976261 8976435 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild exon 8976546 8976721 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild exon 8977007 8977440 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild exon 8977509 8977740 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild exon 8977802 8978026 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild exon 8978264 8978456 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild exon 8978519 8978748 . + . gene_id "RvY_03249"; transcript_id "RvY_03249.1"; Scaffold001 rebuild transcript 8979577 8980299 . - . gene_id "RvY_03250"; transcript_id "RvY_03250.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8979577 8979702 . - . gene_id "RvY_03250"; transcript_id "RvY_03250.1"; Scaffold001 rebuild exon 8980129 8980299 . - . gene_id "RvY_03250"; transcript_id "RvY_03250.1"; Scaffold001 rebuild transcript 8981929 8982978 . - . gene_id "RvY_03251"; transcript_id "RvY_03251.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8981929 8982652 . - . gene_id "RvY_03251"; transcript_id "RvY_03251.1"; Scaffold001 rebuild exon 8982770 8982978 . - . gene_id "RvY_03251"; transcript_id "RvY_03251.1"; Scaffold001 rebuild transcript 8984352 8985834 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; annotation "hypothetical protein."; EC "(1)EC3.6.1.-"; similar_genes "(1)RH12_ORYSJ(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 8984352 8984417 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild exon 8984505 8984583 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild exon 8984655 8984681 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild exon 8984913 8984963 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild exon 8985046 8985091 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild exon 8985550 8985584 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild exon 8985737 8985834 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.1"; Scaffold001 rebuild transcript 8984352 8985631 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; annotation "hypothetical protein."; EC "(1)EC3.6.1.-"; similar_genes "(1)RH12_ORYSJ(e-value:3.9e-06;bit-score:49.0)"; Scaffold001 rebuild exon 8984352 8984417 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; Scaffold001 rebuild exon 8984505 8984583 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; Scaffold001 rebuild exon 8984655 8984681 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; Scaffold001 rebuild exon 8984913 8984963 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; Scaffold001 rebuild exon 8985046 8985091 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; Scaffold001 rebuild exon 8985550 8985631 . + . gene_id "RvY_03252"; transcript_id "RvY_03252.2"; Scaffold001 rebuild transcript 8986817 8987467 . + . gene_id "RvY_03253"; transcript_id "RvY_03253.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8986817 8987177 . + . gene_id "RvY_03253"; transcript_id "RvY_03253.1"; Scaffold001 rebuild exon 8987280 8987467 . + . gene_id "RvY_03253"; transcript_id "RvY_03253.1"; Scaffold001 rebuild transcript 8989149 8990590 . - . gene_id "RvY_03254"; transcript_id "RvY_03254.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8989149 8989652 . - . gene_id "RvY_03254"; transcript_id "RvY_03254.1"; Scaffold001 rebuild exon 8990116 8990441 . - . gene_id "RvY_03254"; transcript_id "RvY_03254.1"; Scaffold001 rebuild exon 8990476 8990590 . - . gene_id "RvY_03254"; transcript_id "RvY_03254.1"; Scaffold001 rebuild transcript 8991041 8991478 . - . gene_id "RvY_03255"; transcript_id "RvY_03255.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold001 rebuild exon 8991041 8991478 . - . gene_id "RvY_03255"; transcript_id "RvY_03255.1"; Scaffold001 rebuild transcript 8992591 8993307 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 8992591 8992710 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.1"; Scaffold001 rebuild exon 8992795 8993135 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.1"; Scaffold001 rebuild exon 8993214 8993307 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.1"; Scaffold001 rebuild transcript 8992192 8992640 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.2"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold001 rebuild exon 8992192 8992397 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.2"; Scaffold001 rebuild exon 8992475 8992640 . + . gene_id "RvY_03256"; transcript_id "RvY_03256.2"; Scaffold001 rebuild transcript 8993691 8994944 . - . gene_id "RvY_03257"; transcript_id "RvY_03257.1"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold001 rebuild exon 8993691 8993827 . - . gene_id "RvY_03257"; transcript_id "RvY_03257.1"; Scaffold001 rebuild exon 8993907 8994080 . - . gene_id "RvY_03257"; transcript_id "RvY_03257.1"; Scaffold001 rebuild exon 8994156 8994340 . - . gene_id "RvY_03257"; transcript_id "RvY_03257.1"; Scaffold001 rebuild exon 8994427 8994534 . - . gene_id "RvY_03257"; transcript_id "RvY_03257.1"; Scaffold001 rebuild exon 8994652 8994944 . - . gene_id "RvY_03257"; transcript_id "RvY_03257.1"; Scaffold001 rebuild transcript 8996697 8996948 . - . gene_id "RvY_03258"; transcript_id "RvY_03258.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 8996697 8996948 . - . gene_id "RvY_03258"; transcript_id "RvY_03258.1"; Scaffold001 rebuild transcript 8999606 9000913 . + . gene_id "RvY_03259"; transcript_id "RvY_03259.1"; gene_name "UBCc"; annotation "hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this Scaffold001 rebuild exon 8999606 9000091 . + . gene_id "RvY_03259"; transcript_id "RvY_03259.1"; Scaffold001 rebuild exon 9000166 9000452 . + . gene_id "RvY_03259"; transcript_id "RvY_03259.1"; Scaffold001 rebuild exon 9000655 9000913 . + . gene_id "RvY_03259"; transcript_id "RvY_03259.1"; Scaffold001 rebuild transcript 9003100 9005785 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; gene_name "(1)PTKc(2)K08252"; annotation "(1,3)hypothetical protein.(2)receptor protein-tyrosine kinase [EC:2.7.10.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1,2)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "(2)EC2.7.10.1"; KO "(2)K08252"; similar_genes "(2)PGFRB_MOUSE(e-value:9.8e-22;bit-score:101.0)"; Scaffold001 rebuild exon 9003100 9003485 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9003556 9003740 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9003819 9004236 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9004396 9004620 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9004706 9004813 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9004888 9005005 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9005093 9005329 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9005386 9005445 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild exon 9005624 9005785 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.1"; Scaffold001 rebuild transcript 9002355 9004477 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; gene_name "(1)PTKc(2)K08252"; annotation "(1,3)hypothetical protein.(2)receptor protein-tyrosine kinase [EC:2.7.10.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1,2)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "(2)EC2.7.10.1"; KO "(2)K08252"; similar_genes "(2)PGFRB_MOUSE(e-value:9.8e-22;bit-score:101.0)"; Scaffold001 rebuild exon 9002355 9002529 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild exon 9002629 9002766 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild exon 9002846 9003060 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild exon 9003187 9003485 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild exon 9003556 9003740 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild exon 9003819 9004236 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild exon 9004396 9004477 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.2"; Scaffold001 rebuild transcript 9003815 9005785 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; gene_name "(1)PTKc(2)K08252"; annotation "(1,3)hypothetical protein.(2)receptor protein-tyrosine kinase [EC:2.7.10.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1,2)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "(2)EC2.7.10.1"; KO "(2)K08252"; similar_genes "(2)PGFRB_MOUSE(e-value:9.8e-22;bit-score:101.0)"; Scaffold001 rebuild exon 9003815 9004236 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild exon 9004396 9004620 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild exon 9004706 9004813 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild exon 9004888 9005005 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild exon 9005093 9005329 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild exon 9005386 9005445 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild exon 9005624 9005785 . - . gene_id "RvY_03260"; transcript_id "RvY_03260.3"; Scaffold001 rebuild transcript 9009210 9009729 . + . gene_id "RvY_03261"; transcript_id "RvY_03261.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9009210 9009354 . + . gene_id "RvY_03261"; transcript_id "RvY_03261.1"; Scaffold001 rebuild exon 9009422 9009729 . + . gene_id "RvY_03261"; transcript_id "RvY_03261.1"; Scaffold001 rebuild transcript 9009515 9009989 . - . gene_id "RvY_03262"; transcript_id "RvY_03262.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9009515 9009763 . - . gene_id "RvY_03262"; transcript_id "RvY_03262.1"; Scaffold001 rebuild exon 9009888 9009989 . - . gene_id "RvY_03262"; transcript_id "RvY_03262.1"; Scaffold001 rebuild transcript 9014314 9015593 . - . gene_id "RvY_03263"; transcript_id "RvY_03263.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold001 rebuild exon 9014314 9014615 . - . gene_id "RvY_03263"; transcript_id "RvY_03263.1"; Scaffold001 rebuild exon 9014698 9014863 . - . gene_id "RvY_03263"; transcript_id "RvY_03263.1"; Scaffold001 rebuild exon 9014943 9015100 . - . gene_id "RvY_03263"; transcript_id "RvY_03263.1"; Scaffold001 rebuild exon 9015173 9015352 . - . gene_id "RvY_03263"; transcript_id "RvY_03263.1"; Scaffold001 rebuild exon 9015428 9015593 . - . gene_id "RvY_03263"; transcript_id "RvY_03263.1"; Scaffold001 rebuild transcript 9016872 9026276 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; gene_name "MRP_assoc_pro"; annotation "Canalicular multispecific organic anion transporter 2"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "MRP3_HUMAN(e-value:2.6e-75;bit-score:279.0)"; Scaffold001 rebuild exon 9016872 9016986 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9017070 9017264 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9017347 9017513 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9017712 9018126 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9018198 9018326 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9018421 9018659 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9018736 9019007 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9019076 9019704 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9019775 9019886 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9019942 9020407 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9020866 9021084 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9021173 9021304 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9021385 9021523 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9021611 9021757 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9021883 9022029 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9022120 9022248 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9022314 9022445 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9022519 9022580 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9022653 9022769 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9022835 9022960 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9025768 9025881 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9025960 9026136 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild exon 9026220 9026276 . - . gene_id "RvY_03264"; transcript_id "RvY_03264.1"; Scaffold001 rebuild transcript 9027639 9028946 . - . gene_id "RvY_03265"; transcript_id "RvY_03265.1"; gene_name "RhaT"; annotation "hypothetical protein."; Pfam "(1)[EmrE] Multidrug resistance efflux transporter|[EamA] EamA-like transporter family"; CDD "Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]"; similar_genes "(1)TMM20_HUMAN(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 9027639 9028946 . - . gene_id "RvY_03265"; transcript_id "RvY_03265.1"; Scaffold001 rebuild transcript 9027639 9029848 . - . gene_id "RvY_03265"; transcript_id "RvY_03265.2"; gene_name "RhaT"; annotation "hypothetical protein."; Pfam "(1)[EmrE] Multidrug resistance efflux transporter|[EamA] EamA-like transporter family"; CDD "Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]"; similar_genes "(1)TMM20_HUMAN(e-value:3.4e-07;bit-score:53.0)"; Scaffold001 rebuild exon 9027639 9028399 . - . gene_id "RvY_03265"; transcript_id "RvY_03265.2"; Scaffold001 rebuild exon 9029773 9029848 . - . gene_id "RvY_03265"; transcript_id "RvY_03265.2"; Scaffold001 rebuild transcript 9030727 9030921 . + . gene_id "RvY_03266"; transcript_id "RvY_03266.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9030727 9030921 . + . gene_id "RvY_03266"; transcript_id "RvY_03266.1"; Scaffold001 rebuild transcript 9031494 9032469 . + . gene_id "RvY_03267"; transcript_id "RvY_03267.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9031494 9031687 . + . gene_id "RvY_03267"; transcript_id "RvY_03267.1"; Scaffold001 rebuild exon 9031805 9031898 . + . gene_id "RvY_03267"; transcript_id "RvY_03267.1"; Scaffold001 rebuild exon 9031924 9032469 . + . gene_id "RvY_03267"; transcript_id "RvY_03267.1"; Scaffold001 rebuild transcript 9033253 9038519 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; gene_name "GPR125"; annotation "G protein-coupled receptor 125"; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "polycystin cation channel protein. Note: this model is restricted to the amino half because a full-length model is incompatible with the HMM software package."; KO "K08462"; Scaffold001 rebuild exon 9033253 9034443 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9034590 9034948 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9035023 9035317 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9035626 9036018 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9036308 9036615 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9036679 9036854 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9036967 9037038 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9037157 9037228 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9037327 9037398 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9037925 9037999 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild exon 9038197 9038519 . - . gene_id "RvY_03268"; transcript_id "RvY_03268.1"; Scaffold001 rebuild transcript 9039076 9039425 . + . gene_id "RvY_03269"; transcript_id "RvY_03269.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9039076 9039078 . + . gene_id "RvY_03269"; transcript_id "RvY_03269.1"; Scaffold001 rebuild exon 9039186 9039425 . + . gene_id "RvY_03269"; transcript_id "RvY_03269.1"; Scaffold001 rebuild transcript 9039743 9040132 . - . gene_id "RvY_03270"; transcript_id "RvY_03270.1"; annotation "hypothetical protein."; Pfam "[CI-B14_5a] NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)"; Scaffold001 rebuild exon 9039743 9040132 . - . gene_id "RvY_03270"; transcript_id "RvY_03270.1"; Scaffold001 rebuild transcript 9041312 9041638 . + . gene_id "RvY_03271"; transcript_id "RvY_03271.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9041312 9041638 . + . gene_id "RvY_03271"; transcript_id "RvY_03271.1"; Scaffold001 rebuild transcript 9041819 9042115 . + . gene_id "RvY_03272"; transcript_id "RvY_03272.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9041819 9042115 . + . gene_id "RvY_03272"; transcript_id "RvY_03272.1"; Scaffold001 rebuild transcript 9043459 9045959 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[FYVE] FYVE zinc finger"; KO "K15691"; Scaffold001 rebuild exon 9043459 9043925 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; Scaffold001 rebuild exon 9044029 9044357 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; Scaffold001 rebuild exon 9044435 9044566 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; Scaffold001 rebuild exon 9044628 9044818 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; Scaffold001 rebuild exon 9044898 9045192 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; Scaffold001 rebuild exon 9045586 9045959 . + . gene_id "RvY_03273"; transcript_id "RvY_03273.1"; Scaffold001 rebuild transcript 9046470 9047318 . + . gene_id "RvY_03274"; transcript_id "RvY_03274.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9046470 9046777 . + . gene_id "RvY_03274"; transcript_id "RvY_03274.1"; Scaffold001 rebuild exon 9046842 9047003 . + . gene_id "RvY_03274"; transcript_id "RvY_03274.1"; Scaffold001 rebuild exon 9047105 9047318 . + . gene_id "RvY_03274"; transcript_id "RvY_03274.1"; Scaffold001 rebuild transcript 9047581 9048237 . - . gene_id "RvY_03275"; transcript_id "RvY_03275.1"; gene_name "grxD"; annotation "putative Glutaredoxin-related protein 5"; Pfam "[Glutaredoxin]"; CDD "Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]"; KO "K07390"; similar_genes "GLRX5_MOUSE(e-value:1.6e-34;bit-score:144.0)"; Scaffold001 rebuild exon 9047581 9047801 . - . gene_id "RvY_03275"; transcript_id "RvY_03275.1"; Scaffold001 rebuild exon 9047934 9048237 . - . gene_id "RvY_03275"; transcript_id "RvY_03275.1"; Scaffold001 rebuild transcript 9048635 9051075 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold001 rebuild exon 9048635 9048773 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild exon 9048906 9048917 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild exon 9048986 9049026 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild exon 9049796 9049879 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild exon 9049937 9050154 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild exon 9050415 9050549 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild exon 9050844 9051075 . + . gene_id "RvY_03276"; transcript_id "RvY_03276.1"; Scaffold001 rebuild transcript 9051416 9055631 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GUC2D_RAT(e-value:2.7e-11;bit-score:67.0)"; Scaffold001 rebuild exon 9051416 9051621 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9051728 9051974 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9052090 9052309 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9052368 9052520 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9052583 9052775 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9052994 9053315 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9053374 9053666 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9053735 9054121 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9054187 9054331 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9054395 9054819 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9054901 9055080 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9055165 9055302 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild exon 9055373 9055631 . - . gene_id "RvY_03277"; transcript_id "RvY_03277.1"; Scaffold001 rebuild transcript 9059185 9059595 . - . gene_id "RvY_03278"; transcript_id "RvY_03278.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9059185 9059595 . - . gene_id "RvY_03278"; transcript_id "RvY_03278.1"; Scaffold001 rebuild transcript 9060081 9066859 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; gene_name "b_cpa1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "sodium/hydrogen exchanger 3. This Hmm is specific for the eukaryotic members members of this family."; KO "K14722"; similar_genes "SL9A3_DIDMA(e-value:6.3e-17;bit-score:85.0)"; Scaffold001 rebuild exon 9060081 9060874 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9061284 9061485 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9063520 9063728 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9063801 9064132 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9064400 9064661 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9064819 9065236 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9065849 9066255 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild exon 9066493 9066859 . + . gene_id "RvY_03279"; transcript_id "RvY_03279.1"; Scaffold001 rebuild transcript 9067351 9068511 . + . gene_id "RvY_03280"; transcript_id "RvY_03280.1"; product "CAHS7"; gene_name "YmdA_YtgF"; annotation "CAHS7 | hypothetical protein."; CDD "conserved hypothetical protein YmdA/YtgF."; Scaffold001 rebuild exon 9067351 9067829 . + . gene_id "RvY_03280"; transcript_id "RvY_03280.1"; Scaffold001 rebuild exon 9068097 9068329 . + . gene_id "RvY_03280"; transcript_id "RvY_03280.1"; Scaffold001 rebuild exon 9068417 9068511 . + . gene_id "RvY_03280"; transcript_id "RvY_03280.1"; Scaffold001 rebuild transcript 9068723 9069400 . - . gene_id "RvY_03281"; transcript_id "RvY_03281.1"; annotation "hypothetical protein."; Pfam "[IPP-2] Protein phosphatase inhibitor 2 (IPP-2)"; similar_genes "IPP2_RABIT(e-value:3.0e-08;bit-score:56.0)"; Scaffold001 rebuild exon 9068723 9069036 . - . gene_id "RvY_03281"; transcript_id "RvY_03281.1"; Scaffold001 rebuild exon 9069154 9069400 . - . gene_id "RvY_03281"; transcript_id "RvY_03281.1"; Scaffold001 rebuild transcript 9070097 9072809 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; gene_name "ABI2"; annotation "abl interactor 2"; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[Abi_HHR] Abl-interactor HHR"; KO "K05751"; similar_genes "ABI2_HUMAN(e-value:2.9e-23;bit-score:106.0)"; Scaffold001 rebuild exon 9070097 9070243 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; Scaffold001 rebuild exon 9070559 9070726 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; Scaffold001 rebuild exon 9070815 9071225 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; Scaffold001 rebuild exon 9071385 9071793 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; Scaffold001 rebuild exon 9072123 9072521 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; Scaffold001 rebuild exon 9072589 9072809 . + . gene_id "RvY_03282"; transcript_id "RvY_03282.1"; Scaffold001 rebuild transcript 9073219 9075311 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; gene_name "PRI1"; annotation "putative DNA primase small subunit"; Pfam "[DNA_primase_S] Eukaryotic and archaeal DNA primase small subunit"; CDD "AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically Scaffold001 rebuild exon 9073219 9073514 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild exon 9073591 9073756 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild exon 9073828 9074079 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild exon 9074144 9074280 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild exon 9074649 9074809 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild exon 9074874 9075234 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild exon 9075290 9075311 . - . gene_id "RvY_03283"; transcript_id "RvY_03283.1"; Scaffold001 rebuild transcript 9076242 9078448 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; gene_name "(1)SLC6A6"; annotation "(1)putative Sodium- and chloride-dependent GABA transporter 3(2)Sodium- and chloride-dependent GABA transporter 3"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1)K05039"; similar_genes "(1)S6A11_HUMAN(e-value:1.2e-49;bit-score:194.0)(2)S6A11_RAT(e-value:2.3e-63;bit-score:240.0)"; Scaffold001 rebuild exon 9076242 9076322 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9076406 9076491 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9076552 9076740 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9076839 9076941 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9077012 9077195 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9077257 9077880 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9077940 9078095 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9078158 9078302 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild exon 9078388 9078448 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.1"; Scaffold001 rebuild transcript 9076242 9077714 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; gene_name "(1)SLC6A6"; annotation "(1)putative Sodium- and chloride-dependent GABA transporter 3(2)Sodium- and chloride-dependent GABA transporter 3"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1)K05039"; similar_genes "(1)S6A11_HUMAN(e-value:1.2e-49;bit-score:194.0)(2)S6A11_RAT(e-value:2.3e-63;bit-score:240.0)"; Scaffold001 rebuild exon 9076242 9076322 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; Scaffold001 rebuild exon 9076406 9076740 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; Scaffold001 rebuild exon 9076839 9076941 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; Scaffold001 rebuild exon 9077012 9077195 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; Scaffold001 rebuild exon 9077257 9077445 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; Scaffold001 rebuild exon 9077509 9077714 . - . gene_id "RvY_03284"; transcript_id "RvY_03284.2"; Scaffold001 rebuild transcript 9080221 9085191 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 9080221 9080610 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9080678 9080935 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9081024 9081066 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9081134 9081436 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9081717 9081991 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9082052 9082199 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9082430 9082920 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9082997 9083095 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9083289 9083566 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9083627 9083667 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9083760 9083943 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9084023 9084175 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9084344 9084810 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9084874 9085008 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild exon 9085112 9085191 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.1"; Scaffold001 rebuild transcript 9080221 9083841 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold001 rebuild exon 9080221 9080610 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9080678 9080935 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9081024 9081066 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9081134 9081436 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9081717 9081991 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9082052 9082199 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9082430 9082920 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9082997 9083095 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9083289 9083566 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9083627 9083667 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild exon 9083756 9083841 . + . gene_id "RvY_03285"; transcript_id "RvY_03285.2"; Scaffold001 rebuild transcript 9085443 9087338 . - . gene_id "RvY_03286"; transcript_id "RvY_03286.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold001 rebuild exon 9085443 9086278 . - . gene_id "RvY_03286"; transcript_id "RvY_03286.1"; Scaffold001 rebuild exon 9086343 9086828 . - . gene_id "RvY_03286"; transcript_id "RvY_03286.1"; Scaffold001 rebuild exon 9086924 9087338 . - . gene_id "RvY_03286"; transcript_id "RvY_03286.1"; Scaffold001 rebuild transcript 9088085 9088983 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.1"; annotation "hypothetical protein."; Pfam "[DnaJ]"; similar_genes "(1)DNAJ_CHLPN(e-value:4.7e-15;bit-score:79.0)"; Scaffold001 rebuild exon 9088085 9088556 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.1"; Scaffold001 rebuild exon 9088652 9088762 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.1"; Scaffold001 rebuild exon 9088919 9088983 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.1"; Scaffold001 rebuild transcript 9087920 9088534 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.2"; annotation "hypothetical protein."; Pfam "[DnaJ]"; similar_genes "(1)DNAJ_CHLPN(e-value:4.7e-15;bit-score:79.0)"; Scaffold001 rebuild exon 9087920 9088016 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.2"; Scaffold001 rebuild exon 9088089 9088534 . - . gene_id "RvY_03287"; transcript_id "RvY_03287.2"; Scaffold001 rebuild transcript 9089320 9090036 . - . gene_id "RvY_03288"; transcript_id "RvY_03288.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9089320 9089726 . - . gene_id "RvY_03288"; transcript_id "RvY_03288.1"; Scaffold001 rebuild exon 9089811 9090036 . - . gene_id "RvY_03288"; transcript_id "RvY_03288.1"; Scaffold001 rebuild transcript 9091491 9094018 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; gene_name "RUN"; annotation "hypothetical protein."; Pfam "[RUN]"; CDD "domain involved in Ras-like GTPase signaling."; Scaffold001 rebuild exon 9091491 9091883 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9091945 9092175 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9092359 9092511 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9092580 9092682 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9092737 9093227 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9093292 9093405 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9093502 9093692 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9093754 9093848 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild exon 9093912 9094018 . + . gene_id "RvY_03289"; transcript_id "RvY_03289.1"; Scaffold001 rebuild transcript 9095018 9095519 . + . gene_id "RvY_03290"; transcript_id "RvY_03290.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9095018 9095066 . + . gene_id "RvY_03290"; transcript_id "RvY_03290.1"; Scaffold001 rebuild exon 9095188 9095519 . + . gene_id "RvY_03290"; transcript_id "RvY_03290.1"; Scaffold001 rebuild transcript 9095670 9095993 . + . gene_id "RvY_03291"; transcript_id "RvY_03291.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9095670 9095993 . + . gene_id "RvY_03291"; transcript_id "RvY_03291.1"; Scaffold001 rebuild transcript 9095670 9096182 . + . gene_id "RvY_03291"; transcript_id "RvY_03291.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9095670 9095945 . + . gene_id "RvY_03291"; transcript_id "RvY_03291.2"; Scaffold001 rebuild exon 9096138 9096182 . + . gene_id "RvY_03291"; transcript_id "RvY_03291.2"; Scaffold001 rebuild transcript 9095977 9096354 . - . gene_id "RvY_03292"; transcript_id "RvY_03292.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9095977 9096354 . - . gene_id "RvY_03292"; transcript_id "RvY_03292.1"; Scaffold001 rebuild transcript 9096191 9097875 . + . gene_id "RvY_03293"; transcript_id "RvY_03293.1"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain"; Scaffold001 rebuild exon 9096191 9096320 . + . gene_id "RvY_03293"; transcript_id "RvY_03293.1"; Scaffold001 rebuild exon 9096533 9096958 . + . gene_id "RvY_03293"; transcript_id "RvY_03293.1"; Scaffold001 rebuild exon 9097113 9097471 . + . gene_id "RvY_03293"; transcript_id "RvY_03293.1"; Scaffold001 rebuild exon 9097564 9097875 . + . gene_id "RvY_03293"; transcript_id "RvY_03293.1"; Scaffold001 rebuild transcript 9098336 9098518 . - . gene_id "RvY_03294"; transcript_id "RvY_03294.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9098336 9098518 . - . gene_id "RvY_03294"; transcript_id "RvY_03294.1"; Scaffold001 rebuild transcript 9098997 9100895 . + . gene_id "RvY_03295"; transcript_id "RvY_03295.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 9098997 9099114 . + . gene_id "RvY_03295"; transcript_id "RvY_03295.1"; Scaffold001 rebuild exon 9099186 9099492 . + . gene_id "RvY_03295"; transcript_id "RvY_03295.1"; Scaffold001 rebuild exon 9099505 9099777 . + . gene_id "RvY_03295"; transcript_id "RvY_03295.1"; Scaffold001 rebuild exon 9099891 9099986 . + . gene_id "RvY_03295"; transcript_id "RvY_03295.1"; Scaffold001 rebuild exon 9100025 9100895 . + . gene_id "RvY_03295"; transcript_id "RvY_03295.1"; Scaffold001 rebuild transcript 9103040 9103535 . + . gene_id "RvY_03296"; transcript_id "RvY_03296.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9103040 9103266 . + . gene_id "RvY_03296"; transcript_id "RvY_03296.1"; Scaffold001 rebuild exon 9103388 9103535 . + . gene_id "RvY_03296"; transcript_id "RvY_03296.1"; Scaffold001 rebuild transcript 9104397 9105644 . - . gene_id "RvY_03297"; transcript_id "RvY_03297.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold001 rebuild exon 9104397 9105098 . - . gene_id "RvY_03297"; transcript_id "RvY_03297.1"; Scaffold001 rebuild exon 9105153 9105644 . - . gene_id "RvY_03297"; transcript_id "RvY_03297.1"; Scaffold001 rebuild transcript 9113975 9114241 . - . gene_id "RvY_03298"; transcript_id "RvY_03298.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9113975 9114241 . - . gene_id "RvY_03298"; transcript_id "RvY_03298.1"; Scaffold001 rebuild transcript 9121784 9123915 . - . gene_id "RvY_03299"; transcript_id "RvY_03299.1"; gene_name "FOXA2"; annotation "Hepatocyte nuclear factor 3-beta"; Pfam "[Fork_head] Fork head domain"; KO "K08035"; similar_genes "FOXA2_MOUSE(e-value:4.2e-52;bit-score:202.0)"; Scaffold001 rebuild exon 9121784 9122517 . - . gene_id "RvY_03299"; transcript_id "RvY_03299.1"; Scaffold001 rebuild exon 9123243 9123915 . - . gene_id "RvY_03299"; transcript_id "RvY_03299.1"; Scaffold001 rebuild transcript 9124656 9124958 . - . gene_id "RvY_03300"; transcript_id "RvY_03300.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9124656 9124958 . - . gene_id "RvY_03300"; transcript_id "RvY_03300.1"; Scaffold001 rebuild transcript 9126725 9126895 . + . gene_id "RvY_03301"; transcript_id "RvY_03301.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9126725 9126895 . + . gene_id "RvY_03301"; transcript_id "RvY_03301.1"; Scaffold001 rebuild transcript 9129904 9131683 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; annotation "hypothetical protein."; Pfam "[Med27] Mediator complex subunit 27"; KO "K15170"; similar_genes "MED27_DROME(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 9129904 9130184 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild exon 9130337 9130526 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild exon 9130629 9130744 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild exon 9130859 9130961 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild exon 9131043 9131282 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild exon 9131454 9131532 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild exon 9131610 9131683 . + . gene_id "RvY_03302"; transcript_id "RvY_03302.1"; Scaffold001 rebuild transcript 9133958 9136898 . + . gene_id "RvY_03303"; transcript_id "RvY_03303.1"; annotation "putative Homeobox protein orthopedia"; Pfam "[OAR]|[Homeobox]"; similar_genes "OTP_DROME(e-value:4.9e-38;bit-score:155.0)"; Scaffold001 rebuild exon 9133958 9134000 . + . gene_id "RvY_03303"; transcript_id "RvY_03303.1"; Scaffold001 rebuild exon 9134328 9134702 . + . gene_id "RvY_03303"; transcript_id "RvY_03303.1"; Scaffold001 rebuild exon 9134774 9134820 . + . gene_id "RvY_03303"; transcript_id "RvY_03303.1"; Scaffold001 rebuild exon 9136191 9136419 . + . gene_id "RvY_03303"; transcript_id "RvY_03303.1"; Scaffold001 rebuild exon 9136516 9136898 . + . gene_id "RvY_03303"; transcript_id "RvY_03303.1"; Scaffold001 rebuild transcript 9138107 9140364 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; gene_name "(1)2A1904(2)COG3889"; annotation "(1)putative Integumentary mucin C.1(2)hypothetical protein."; CDD "(1)K+-dependent Na+/Ca+ exchanger.(2)Predicted solute binding protein [General function prediction only]"; similar_genes "(1)MUC1_XENLA(e-value:5.2e-27;bit-score:119.0)(2)MUC1_XENLA(e-value:8.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 9138107 9138319 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9138405 9138446 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9138518 9138553 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9138650 9138721 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9138788 9138853 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9138930 9138977 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9139049 9139219 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9139353 9139421 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9139482 9139670 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9139732 9139770 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9139838 9140013 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9140110 9140221 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild exon 9140293 9140364 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.1"; Scaffold001 rebuild transcript 9138401 9140110 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; gene_name "(1)2A1904(2)COG3889"; annotation "(1)putative Integumentary mucin C.1(2)hypothetical protein."; CDD "(1)K+-dependent Na+/Ca+ exchanger.(2)Predicted solute binding protein [General function prediction only]"; similar_genes "(1)MUC1_XENLA(e-value:5.2e-27;bit-score:119.0)(2)MUC1_XENLA(e-value:8.6e-23;bit-score:105.0)"; Scaffold001 rebuild exon 9138401 9138553 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9138650 9138721 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9138788 9138853 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9138930 9138977 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9139049 9139219 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9139353 9139421 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9139482 9139670 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9139732 9139770 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9139838 9140013 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild exon 9140110 9140110 . - . gene_id "RvY_03304"; transcript_id "RvY_03304.2"; Scaffold001 rebuild transcript 9141802 9146222 . - . gene_id "RvY_03305"; transcript_id "RvY_03305.1"; gene_name "STK23"; annotation "Serine/threonine-protein kinase SRPK2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08832"; similar_genes "SRPK2_MOUSE(e-value:5.2e-80;bit-score:295.0)"; Scaffold001 rebuild exon 9141802 9142245 . - . gene_id "RvY_03305"; transcript_id "RvY_03305.1"; Scaffold001 rebuild exon 9142310 9142671 . - . gene_id "RvY_03305"; transcript_id "RvY_03305.1"; Scaffold001 rebuild exon 9143804 9144160 . - . gene_id "RvY_03305"; transcript_id "RvY_03305.1"; Scaffold001 rebuild exon 9144312 9145378 . - . gene_id "RvY_03305"; transcript_id "RvY_03305.1"; Scaffold001 rebuild exon 9145930 9146222 . - . gene_id "RvY_03305"; transcript_id "RvY_03305.1"; Scaffold001 rebuild transcript 9148554 9156949 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; gene_name "ROBO1"; annotation "roundabout, axon guidance receptor 1"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Herpes_gE] Alphaherpesvirus glycoprotein E|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site."; KO "K06753"; similar_genes "ROBO1_MOUSE(e-value:1.2e-09;bit-score:61.0)"; Scaffold001 rebuild exon 9148554 9148933 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9149008 9149642 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9149701 9150214 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9150290 9150640 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9151263 9151533 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9151676 9152066 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9152261 9152761 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9152857 9153032 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9153121 9153273 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9153335 9153666 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9153741 9154052 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9154119 9154235 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild exon 9156874 9156949 . - . gene_id "RvY_03306"; transcript_id "RvY_03306.1"; Scaffold001 rebuild transcript 9155927 9156112 . + . gene_id "RvY_03307"; transcript_id "RvY_03307.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9155927 9156112 . + . gene_id "RvY_03307"; transcript_id "RvY_03307.1"; Scaffold001 rebuild transcript 9157047 9161170 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9157047 9157082 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.1"; Scaffold001 rebuild exon 9160584 9160664 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.1"; Scaffold001 rebuild exon 9160847 9161060 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.1"; Scaffold001 rebuild exon 9161154 9161170 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.1"; Scaffold001 rebuild transcript 9157047 9158449 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9157047 9157082 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.2"; Scaffold001 rebuild exon 9158150 9158449 . - . gene_id "RvY_03308"; transcript_id "RvY_03308.2"; Scaffold001 rebuild transcript 9158872 9159078 . + . gene_id "RvY_03309"; transcript_id "RvY_03309.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9158872 9159078 . + . gene_id "RvY_03309"; transcript_id "RvY_03309.1"; Scaffold001 rebuild transcript 9161941 9162353 . + . gene_id "RvY_03310"; transcript_id "RvY_03310.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9161941 9162137 . + . gene_id "RvY_03310"; transcript_id "RvY_03310.1"; Scaffold001 rebuild exon 9162203 9162353 . + . gene_id "RvY_03310"; transcript_id "RvY_03310.1"; Scaffold001 rebuild transcript 9162385 9163462 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.1"; gene_name "(1)nucleoside_deaminase"; annotation "hypothetical protein."; CDD "(1)Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the Scaffold001 rebuild exon 9162385 9162593 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.1"; Scaffold001 rebuild exon 9162713 9162984 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.1"; Scaffold001 rebuild exon 9163060 9163168 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.1"; Scaffold001 rebuild exon 9163300 9163462 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.1"; Scaffold001 rebuild transcript 9162385 9163172 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.2"; gene_name "(1)nucleoside_deaminase"; annotation "hypothetical protein."; CDD "(1)Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the Scaffold001 rebuild exon 9162385 9162593 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.2"; Scaffold001 rebuild exon 9162713 9162984 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.2"; Scaffold001 rebuild exon 9163060 9163172 . + . gene_id "RvY_03311"; transcript_id "RvY_03311.2"; Scaffold001 rebuild transcript 9163650 9163991 . - . gene_id "RvY_03312"; transcript_id "RvY_03312.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9163650 9163991 . - . gene_id "RvY_03312"; transcript_id "RvY_03312.1"; Scaffold001 rebuild transcript 9164007 9167276 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.1"; gene_name "SOX1S"; annotation "putative Transcription factor Sox-2"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; KO "K09267"; similar_genes "SOX2_XENLA(e-value:1.7e-40;bit-score:164.0)"; Scaffold001 rebuild exon 9164007 9164872 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.1"; Scaffold001 rebuild exon 9166724 9167276 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.1"; Scaffold001 rebuild transcript 9164007 9169868 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.2"; gene_name "SOX1S"; annotation "putative Transcription factor Sox-2"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; KO "K09267"; similar_genes "SOX2_XENLA(e-value:1.7e-40;bit-score:164.0)"; Scaffold001 rebuild exon 9164007 9164872 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.2"; Scaffold001 rebuild exon 9166724 9167021 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.2"; Scaffold001 rebuild exon 9169806 9169868 . - . gene_id "RvY_03313"; transcript_id "RvY_03313.2"; Scaffold001 rebuild transcript 9171202 9171375 . + . gene_id "RvY_03314"; transcript_id "RvY_03314.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9171202 9171375 . + . gene_id "RvY_03314"; transcript_id "RvY_03314.1"; Scaffold001 rebuild transcript 9172999 9173825 . - . gene_id "RvY_03315"; transcript_id "RvY_03315.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9172999 9173168 . - . gene_id "RvY_03315"; transcript_id "RvY_03315.1"; Scaffold001 rebuild exon 9173765 9173825 . - . gene_id "RvY_03315"; transcript_id "RvY_03315.1"; Scaffold001 rebuild transcript 9177945 9178097 . + . gene_id "RvY_03316"; transcript_id "RvY_03316.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9177945 9178097 . + . gene_id "RvY_03316"; transcript_id "RvY_03316.1"; Scaffold001 rebuild transcript 9180259 9180447 . + . gene_id "RvY_03317"; transcript_id "RvY_03317.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9180259 9180447 . + . gene_id "RvY_03317"; transcript_id "RvY_03317.1"; Scaffold001 rebuild transcript 9190142 9200818 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; annotation "hypothetical protein."; Pfam "[EGF_CA] Calcium-binding EGF domain|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; Scaffold001 rebuild exon 9190142 9190243 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9190312 9190629 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9190717 9191544 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9191725 9191775 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9191856 9192065 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9192148 9193052 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9193385 9193737 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9193801 9193903 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9193971 9194023 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9194107 9194287 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9194359 9194644 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9194721 9194848 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9194929 9195822 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9195909 9196514 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9196593 9196712 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9196779 9197024 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9197097 9197570 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9197789 9198086 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9198165 9198736 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild exon 9200734 9200818 . - . gene_id "RvY_03318"; transcript_id "RvY_03318.1"; Scaffold001 rebuild transcript 9201380 9201862 . - . gene_id "RvY_03319"; transcript_id "RvY_03319.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9201380 9201416 . - . gene_id "RvY_03319"; transcript_id "RvY_03319.1"; Scaffold001 rebuild exon 9201480 9201862 . - . gene_id "RvY_03319"; transcript_id "RvY_03319.1"; Scaffold001 rebuild transcript 9201476 9201862 . - . gene_id "RvY_03319"; transcript_id "RvY_03319.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9201476 9201862 . - . gene_id "RvY_03319"; transcript_id "RvY_03319.2"; Scaffold001 rebuild transcript 9202609 9203826 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; gene_name "(1)PRK05648"; annotation "hypothetical protein."; CDD "(1)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold001 rebuild exon 9202609 9202640 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; Scaffold001 rebuild exon 9202701 9202817 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; Scaffold001 rebuild exon 9202913 9202948 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; Scaffold001 rebuild exon 9203013 9203267 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; Scaffold001 rebuild exon 9203330 9203641 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; Scaffold001 rebuild exon 9203715 9203826 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.1"; Scaffold001 rebuild transcript 9202556 9203298 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.2"; gene_name "(1)PRK05648"; annotation "hypothetical protein."; CDD "(1)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold001 rebuild exon 9202556 9202640 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.2"; Scaffold001 rebuild exon 9202701 9202817 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.2"; Scaffold001 rebuild exon 9202913 9203298 . - . gene_id "RvY_03320"; transcript_id "RvY_03320.2"; Scaffold001 rebuild transcript 9204304 9205958 . - . gene_id "RvY_03321"; transcript_id "RvY_03321.1"; gene_name "DUF1208"; annotation "hypothetical protein."; Pfam "[FAM92] FAM92 protein"; CDD "Protein of unknown function (DUF1208). This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown."; Scaffold001 rebuild exon 9204304 9205021 . - . gene_id "RvY_03321"; transcript_id "RvY_03321.1"; Scaffold001 rebuild exon 9205099 9205556 . - . gene_id "RvY_03321"; transcript_id "RvY_03321.1"; Scaffold001 rebuild exon 9205638 9205958 . - . gene_id "RvY_03321"; transcript_id "RvY_03321.1"; Scaffold001 rebuild transcript 9205994 9206170 . + . gene_id "RvY_03322"; transcript_id "RvY_03322.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9205994 9206170 . + . gene_id "RvY_03322"; transcript_id "RvY_03322.1"; Scaffold001 rebuild transcript 9206453 9210037 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9206453 9206656 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9206742 9207194 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9207449 9207796 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9207859 9208197 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9208263 9208376 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9208440 9208736 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9208799 9209152 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9209221 9209337 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9209471 9209530 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild exon 9209633 9210037 . - . gene_id "RvY_03323"; transcript_id "RvY_03323.1"; Scaffold001 rebuild transcript 9210542 9211782 . + . gene_id "RvY_03324"; transcript_id "RvY_03324.1"; annotation "hypothetical protein."; Pfam "[Sas10_Utp3] Sas10/Utp3/C1D family"; KO "K14765"; similar_genes "NGDNB_XENLA(e-value:2.8e-19;bit-score:93.0)"; Scaffold001 rebuild exon 9210542 9210703 . + . gene_id "RvY_03324"; transcript_id "RvY_03324.1"; Scaffold001 rebuild exon 9210816 9211155 . + . gene_id "RvY_03324"; transcript_id "RvY_03324.1"; Scaffold001 rebuild exon 9211227 9211681 . + . gene_id "RvY_03324"; transcript_id "RvY_03324.1"; Scaffold001 rebuild exon 9211747 9211782 . + . gene_id "RvY_03324"; transcript_id "RvY_03324.1"; Scaffold001 rebuild transcript 9212171 9214425 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold001 rebuild exon 9212171 9212549 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; Scaffold001 rebuild exon 9212641 9212886 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; Scaffold001 rebuild exon 9213013 9213312 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; Scaffold001 rebuild exon 9213430 9213654 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; Scaffold001 rebuild exon 9213724 9213882 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; Scaffold001 rebuild exon 9214013 9214425 . + . gene_id "RvY_03325"; transcript_id "RvY_03325.1"; Scaffold001 rebuild transcript 9215364 9216275 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.1"; gene_name "map"; annotation "methionyl aminopeptidase [EC:3.4.11.18]"; Pfam "[Peptidase_M24] Metallopeptidase family M24"; CDD "(1,2)methionine aminopeptidase; Validated(3)Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides."; EC "EC3.4.11.18"; KO "K01265"; similar_genes "(1)AMP1D_MOUSE(e-value:1.1e-16;bit-score:85.0)(2)AMP1D_MOUSE(e-value:2.8e-17;bit-score:86.0)(3)AMP1D_HUMAN(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 9215364 9215432 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.1"; Scaffold001 rebuild exon 9215506 9215697 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.1"; Scaffold001 rebuild exon 9215895 9216275 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.1"; Scaffold001 rebuild transcript 9215497 9216275 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.2"; gene_name "map"; annotation "methionyl aminopeptidase [EC:3.4.11.18]"; Pfam "[Peptidase_M24] Metallopeptidase family M24"; CDD "(1,2)methionine aminopeptidase; Validated(3)Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides."; EC "EC3.4.11.18"; KO "K01265"; similar_genes "(1)AMP1D_MOUSE(e-value:1.1e-16;bit-score:85.0)(2)AMP1D_MOUSE(e-value:2.8e-17;bit-score:86.0)(3)AMP1D_HUMAN(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 9215497 9215697 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.2"; Scaffold001 rebuild exon 9215895 9216275 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.2"; Scaffold001 rebuild transcript 9214784 9215534 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.3"; gene_name "map"; annotation "methionyl aminopeptidase [EC:3.4.11.18]"; Pfam "[Peptidase_M24] Metallopeptidase family M24"; CDD "(1,2)methionine aminopeptidase; Validated(3)Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides."; EC "EC3.4.11.18"; KO "K01265"; similar_genes "(1)AMP1D_MOUSE(e-value:1.1e-16;bit-score:85.0)(2)AMP1D_MOUSE(e-value:2.8e-17;bit-score:86.0)(3)AMP1D_HUMAN(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 9214784 9214929 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.3"; Scaffold001 rebuild exon 9215028 9215173 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.3"; Scaffold001 rebuild exon 9215279 9215432 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.3"; Scaffold001 rebuild exon 9215510 9215534 . - . gene_id "RvY_03326"; transcript_id "RvY_03326.3"; Scaffold001 rebuild transcript 9217052 9218535 . - . gene_id "RvY_03327"; transcript_id "RvY_03327.1"; gene_name "eIF-4E"; annotation "translation initiation factor eIF-4E"; Pfam "[IF4E] Eukaryotic initiation factor 4E"; KO "K03259"; similar_genes "IF4E_DROME(e-value:5.1e-06;bit-score:49.0)"; Scaffold001 rebuild exon 9217052 9217132 . - . gene_id "RvY_03327"; transcript_id "RvY_03327.1"; Scaffold001 rebuild exon 9217274 9217465 . - . gene_id "RvY_03327"; transcript_id "RvY_03327.1"; Scaffold001 rebuild exon 9217527 9217722 . - . gene_id "RvY_03327"; transcript_id "RvY_03327.1"; Scaffold001 rebuild exon 9217855 9218042 . - . gene_id "RvY_03327"; transcript_id "RvY_03327.1"; Scaffold001 rebuild exon 9218521 9218535 . - . gene_id "RvY_03327"; transcript_id "RvY_03327.1"; Scaffold001 rebuild transcript 9219683 9221255 . + . gene_id "RvY_03328"; transcript_id "RvY_03328.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9219683 9220163 . + . gene_id "RvY_03328"; transcript_id "RvY_03328.1"; Scaffold001 rebuild exon 9220239 9220552 . + . gene_id "RvY_03328"; transcript_id "RvY_03328.1"; Scaffold001 rebuild exon 9220808 9220887 . + . gene_id "RvY_03328"; transcript_id "RvY_03328.1"; Scaffold001 rebuild exon 9220952 9221255 . + . gene_id "RvY_03328"; transcript_id "RvY_03328.1"; Scaffold001 rebuild transcript 9221540 9223019 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; gene_name "DAGAT"; annotation "hypothetical protein."; Pfam "[DAGAT] Diacylglycerol acyltransferase"; CDD "Diacylglycerol acyltransferase. The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT)."; EC "EC2.3.1.-"; KO "K14457"; similar_genes "DG2L6_HUMAN(e-value:1.1e-16;bit-score:85.0)"; Scaffold001 rebuild exon 9221540 9221691 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; Scaffold001 rebuild exon 9221754 9221927 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; Scaffold001 rebuild exon 9221998 9222216 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; Scaffold001 rebuild exon 9222284 9222400 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; Scaffold001 rebuild exon 9222491 9222663 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; Scaffold001 rebuild exon 9222751 9223019 . - . gene_id "RvY_03329"; transcript_id "RvY_03329.1"; Scaffold001 rebuild transcript 9223840 9224589 . - . gene_id "RvY_03330"; transcript_id "RvY_03330.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9223840 9224388 . - . gene_id "RvY_03330"; transcript_id "RvY_03330.1"; Scaffold001 rebuild exon 9224566 9224589 . - . gene_id "RvY_03330"; transcript_id "RvY_03330.1"; Scaffold001 rebuild transcript 9226383 9227207 . + . gene_id "RvY_03331"; transcript_id "RvY_03331.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9226383 9227207 . + . gene_id "RvY_03331"; transcript_id "RvY_03331.1"; Scaffold001 rebuild transcript 9226344 9227009 . + . gene_id "RvY_03331"; transcript_id "RvY_03331.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9226344 9227009 . + . gene_id "RvY_03331"; transcript_id "RvY_03331.2"; Scaffold001 rebuild transcript 9228254 9228482 . + . gene_id "RvY_03332"; transcript_id "RvY_03332.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9228254 9228388 . + . gene_id "RvY_03332"; transcript_id "RvY_03332.1"; Scaffold001 rebuild exon 9228426 9228482 . + . gene_id "RvY_03332"; transcript_id "RvY_03332.1"; Scaffold001 rebuild transcript 9229940 9230419 . - . gene_id "RvY_03333"; transcript_id "RvY_03333.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9229940 9230308 . - . gene_id "RvY_03333"; transcript_id "RvY_03333.1"; Scaffold001 rebuild exon 9230414 9230419 . - . gene_id "RvY_03333"; transcript_id "RvY_03333.1"; Scaffold001 rebuild transcript 9231648 9232349 . - . gene_id "RvY_03334"; transcript_id "RvY_03334.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9231648 9231771 . - . gene_id "RvY_03334"; transcript_id "RvY_03334.1"; Scaffold001 rebuild exon 9232180 9232349 . - . gene_id "RvY_03334"; transcript_id "RvY_03334.1"; Scaffold001 rebuild transcript 9232606 9232848 . - . gene_id "RvY_03335"; transcript_id "RvY_03335.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9232606 9232848 . - . gene_id "RvY_03335"; transcript_id "RvY_03335.1"; Scaffold001 rebuild transcript 9233321 9237089 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; gene_name "K01528"; annotation "Dynamin-1"; Pfam "[PH]|[Dynamin_M] Dynamin central region|[Dynamin_N] Dynamin family|[GED] Dynamin GTPase effector domain"; CDD "Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event."; EC "EC3.6.5.5"; KO "K01528"; similar_genes "DYN1_RAT(e-value:6.7e-165;bit-score:577.0)"; Scaffold001 rebuild exon 9233321 9233484 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9233655 9233728 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9233860 9234009 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9234098 9234301 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9234399 9234606 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9234686 9234880 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9234948 9235095 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9235183 9235389 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9235501 9235658 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9235727 9236162 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9236224 9236379 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9236435 9236670 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild exon 9236738 9237089 . + . gene_id "RvY_03336"; transcript_id "RvY_03336.1"; Scaffold001 rebuild transcript 9237573 9238105 . - . gene_id "RvY_03337"; transcript_id "RvY_03337.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9237573 9237895 . - . gene_id "RvY_03337"; transcript_id "RvY_03337.1"; Scaffold001 rebuild exon 9238027 9238105 . - . gene_id "RvY_03337"; transcript_id "RvY_03337.1"; Scaffold001 rebuild transcript 9238727 9240323 . - . gene_id "RvY_03338"; transcript_id "RvY_03338.1"; annotation "hypothetical protein."; similar_genes "GRP1_ARATH(e-value:1.5e-24;bit-score:111.0)"; Scaffold001 rebuild exon 9238727 9238886 . - . gene_id "RvY_03338"; transcript_id "RvY_03338.1"; Scaffold001 rebuild exon 9238975 9239799 . - . gene_id "RvY_03338"; transcript_id "RvY_03338.1"; Scaffold001 rebuild exon 9240071 9240109 . - . gene_id "RvY_03338"; transcript_id "RvY_03338.1"; Scaffold001 rebuild exon 9240217 9240323 . - . gene_id "RvY_03338"; transcript_id "RvY_03338.1"; Scaffold001 rebuild transcript 9241681 9243275 . - . gene_id "RvY_03339"; transcript_id "RvY_03339.1"; gene_name "PRK00409"; annotation "hypothetical protein."; CDD "recombination and DNA strand exchange inhibitor protein; Reviewed"; Scaffold001 rebuild exon 9241681 9241779 . - . gene_id "RvY_03339"; transcript_id "RvY_03339.1"; Scaffold001 rebuild exon 9241853 9242098 . - . gene_id "RvY_03339"; transcript_id "RvY_03339.1"; Scaffold001 rebuild exon 9242213 9242398 . - . gene_id "RvY_03339"; transcript_id "RvY_03339.1"; Scaffold001 rebuild exon 9242931 9243275 . - . gene_id "RvY_03339"; transcript_id "RvY_03339.1"; Scaffold001 rebuild transcript 9244147 9244524 . - . gene_id "RvY_03340"; transcript_id "RvY_03340.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9244147 9244307 . - . gene_id "RvY_03340"; transcript_id "RvY_03340.1"; Scaffold001 rebuild exon 9244392 9244524 . - . gene_id "RvY_03340"; transcript_id "RvY_03340.1"; Scaffold001 rebuild transcript 9244773 9245000 . + . gene_id "RvY_03341"; transcript_id "RvY_03341.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9244773 9244874 . + . gene_id "RvY_03341"; transcript_id "RvY_03341.1"; Scaffold001 rebuild exon 9244935 9245000 . + . gene_id "RvY_03341"; transcript_id "RvY_03341.1"; Scaffold001 rebuild transcript 9245388 9245675 . + . gene_id "RvY_03342"; transcript_id "RvY_03342.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9245388 9245675 . + . gene_id "RvY_03342"; transcript_id "RvY_03342.1"; Scaffold001 rebuild transcript 9245983 9246297 . - . gene_id "RvY_03343"; transcript_id "RvY_03343.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9245983 9246297 . - . gene_id "RvY_03343"; transcript_id "RvY_03343.1"; Scaffold001 rebuild transcript 9246606 9249622 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; gene_name "NR0A5"; annotation "putative Hormone receptor 4"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; KO "K09185"; similar_genes "HR4_DROME(e-value:1.0e-46;bit-score:184.0)"; Scaffold001 rebuild exon 9246606 9247102 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; Scaffold001 rebuild exon 9247292 9247512 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; Scaffold001 rebuild exon 9247721 9247973 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; Scaffold001 rebuild exon 9248051 9248517 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; Scaffold001 rebuild exon 9248575 9248922 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; Scaffold001 rebuild exon 9249117 9249622 . - . gene_id "RvY_03344"; transcript_id "RvY_03344.1"; Scaffold001 rebuild transcript 9250071 9250479 . + . gene_id "RvY_03345"; transcript_id "RvY_03345.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9250071 9250186 . + . gene_id "RvY_03345"; transcript_id "RvY_03345.1"; Scaffold001 rebuild exon 9250431 9250479 . + . gene_id "RvY_03345"; transcript_id "RvY_03345.1"; Scaffold001 rebuild transcript 9252452 9253804 . - . gene_id "RvY_03346"; transcript_id "RvY_03346.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9252452 9252570 . - . gene_id "RvY_03346"; transcript_id "RvY_03346.1"; Scaffold001 rebuild exon 9253726 9253804 . - . gene_id "RvY_03346"; transcript_id "RvY_03346.1"; Scaffold001 rebuild transcript 9253942 9254604 . + . gene_id "RvY_03347"; transcript_id "RvY_03347.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9253942 9254604 . + . gene_id "RvY_03347"; transcript_id "RvY_03347.1"; Scaffold001 rebuild transcript 9254683 9254970 . + . gene_id "RvY_03348"; transcript_id "RvY_03348.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9254683 9254970 . + . gene_id "RvY_03348"; transcript_id "RvY_03348.1"; Scaffold001 rebuild transcript 9255795 9256028 . + . gene_id "RvY_03349"; transcript_id "RvY_03349.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9255795 9256028 . + . gene_id "RvY_03349"; transcript_id "RvY_03349.1"; Scaffold001 rebuild transcript 9259123 9259434 . + . gene_id "RvY_03350"; transcript_id "RvY_03350.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9259123 9259434 . + . gene_id "RvY_03350"; transcript_id "RvY_03350.1"; Scaffold001 rebuild transcript 9259778 9260793 . + . gene_id "RvY_03351"; transcript_id "RvY_03351.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9259778 9259908 . + . gene_id "RvY_03351"; transcript_id "RvY_03351.1"; Scaffold001 rebuild exon 9260640 9260793 . + . gene_id "RvY_03351"; transcript_id "RvY_03351.1"; Scaffold001 rebuild transcript 9260816 9261037 . + . gene_id "RvY_03352"; transcript_id "RvY_03352.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9260816 9261037 . + . gene_id "RvY_03352"; transcript_id "RvY_03352.1"; Scaffold001 rebuild transcript 9260851 9263793 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; annotation "hypothetical protein."; Pfam "[JmjC] JmjC domain, hydroxylase|[JmjN] jmjN domain"; EC "EC1.14.11.-"; similar_genes "KDM4D_MOUSE(e-value:1.6e-11;bit-score:67.0)"; Scaffold001 rebuild exon 9260851 9260938 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9261024 9261129 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9261773 9261959 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9262141 9262278 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9262337 9262440 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9262514 9262615 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9262728 9262857 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9263179 9263550 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild exon 9263650 9263793 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.1"; Scaffold001 rebuild transcript 9261714 9263793 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; annotation "hypothetical protein."; Pfam "[JmjC] JmjC domain, hydroxylase|[JmjN] jmjN domain"; EC "EC1.14.11.-"; similar_genes "KDM4D_MOUSE(e-value:1.6e-11;bit-score:67.0)"; Scaffold001 rebuild exon 9261714 9261959 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild exon 9262141 9262278 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild exon 9262337 9262440 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild exon 9262514 9262615 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild exon 9262728 9262857 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild exon 9263179 9263550 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild exon 9263650 9263793 . - . gene_id "RvY_03353"; transcript_id "RvY_03353.2"; Scaffold001 rebuild transcript 9264740 9268175 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; gene_name "glpK"; annotation "putative Glycerol kinase"; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain|[FGGY_C] FGGY family of carbohydrate kinases, C-terminal domain"; CDD "glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases."; EC "EC2.7.1.30"; KO "K00864"; similar_genes "(1)GLPK_DESDG(e-value:1.9e-37;bit-score:153.0)(2)GLPK_DESDG(e-value:1.7e-42;bit-score:170.0)(3)GLPK_RAT(e-value:1.2e-32;bit-score:137.0)"; Scaffold001 rebuild exon 9264740 9264753 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9264968 9265213 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9265682 9265788 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9265871 9265948 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9266027 9266244 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9266335 9266547 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9266633 9266700 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9267018 9267317 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9267374 9267458 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild exon 9267543 9268175 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.1"; Scaffold001 rebuild transcript 9265068 9268175 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; gene_name "glpK"; annotation "putative Glycerol kinase"; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain|[FGGY_C] FGGY family of carbohydrate kinases, C-terminal domain"; CDD "glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases."; EC "EC2.7.1.30"; KO "K00864"; similar_genes "(1)GLPK_DESDG(e-value:1.9e-37;bit-score:153.0)(2)GLPK_DESDG(e-value:1.7e-42;bit-score:170.0)(3)GLPK_RAT(e-value:1.2e-32;bit-score:137.0)"; Scaffold001 rebuild exon 9265068 9265213 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9265682 9265788 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9265871 9265948 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9266027 9266244 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9266335 9266547 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9266633 9266700 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9267018 9267317 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9267374 9267458 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9267543 9267663 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild exon 9267751 9268175 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.2"; Scaffold001 rebuild transcript 9265068 9267321 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; gene_name "glpK"; annotation "putative Glycerol kinase"; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain|[FGGY_C] FGGY family of carbohydrate kinases, C-terminal domain"; CDD "glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases."; EC "EC2.7.1.30"; KO "K00864"; similar_genes "(1)GLPK_DESDG(e-value:1.9e-37;bit-score:153.0)(2)GLPK_DESDG(e-value:1.7e-42;bit-score:170.0)(3)GLPK_RAT(e-value:1.2e-32;bit-score:137.0)"; Scaffold001 rebuild exon 9265068 9265213 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild exon 9265682 9265788 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild exon 9265871 9265948 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild exon 9266027 9266244 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild exon 9266335 9266547 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild exon 9266633 9266700 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild exon 9267018 9267321 . + . gene_id "RvY_03354"; transcript_id "RvY_03354.3"; Scaffold001 rebuild transcript 9268755 9271427 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; annotation "hypothetical protein."; Pfam "[VEFS-Box] VEFS-Box of polycomb protein"; Scaffold001 rebuild exon 9268755 9269036 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; Scaffold001 rebuild exon 9269264 9269737 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; Scaffold001 rebuild exon 9269814 9270257 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; Scaffold001 rebuild exon 9270324 9270723 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; Scaffold001 rebuild exon 9270783 9271192 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; Scaffold001 rebuild exon 9271257 9271427 . + . gene_id "RvY_03355"; transcript_id "RvY_03355.1"; Scaffold001 rebuild transcript 9271947 9274157 . - . gene_id "RvY_03356"; transcript_id "RvY_03356.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9271947 9272258 . - . gene_id "RvY_03356"; transcript_id "RvY_03356.1"; Scaffold001 rebuild exon 9272341 9272925 . - . gene_id "RvY_03356"; transcript_id "RvY_03356.1"; Scaffold001 rebuild exon 9273033 9273335 . - . gene_id "RvY_03356"; transcript_id "RvY_03356.1"; Scaffold001 rebuild exon 9273392 9273820 . - . gene_id "RvY_03356"; transcript_id "RvY_03356.1"; Scaffold001 rebuild exon 9273915 9274157 . - . gene_id "RvY_03356"; transcript_id "RvY_03356.1"; Scaffold001 rebuild transcript 9275843 9276292 . - . gene_id "RvY_03357"; transcript_id "RvY_03357.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9275843 9276079 . - . gene_id "RvY_03357"; transcript_id "RvY_03357.1"; Scaffold001 rebuild exon 9276167 9276292 . - . gene_id "RvY_03357"; transcript_id "RvY_03357.1"; Scaffold001 rebuild transcript 9276292 9277805 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel"; similar_genes "KCMA1_MACMU(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 9276292 9276372 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild exon 9276463 9276590 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild exon 9276671 9276703 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild exon 9276784 9277135 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild exon 9277252 9277353 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild exon 9277426 9277487 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild exon 9277553 9277805 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.1"; Scaffold001 rebuild transcript 9276627 9277805 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.2"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel"; similar_genes "KCMA1_MACMU(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 9276627 9276703 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.2"; Scaffold001 rebuild exon 9276784 9277135 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.2"; Scaffold001 rebuild exon 9277252 9277353 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.2"; Scaffold001 rebuild exon 9277426 9277487 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.2"; Scaffold001 rebuild exon 9277553 9277805 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.2"; Scaffold001 rebuild transcript 9276707 9277805 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.3"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel"; similar_genes "KCMA1_MACMU(e-value:1.8e-10;bit-score:64.0)"; Scaffold001 rebuild exon 9276707 9277135 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.3"; Scaffold001 rebuild exon 9277252 9277353 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.3"; Scaffold001 rebuild exon 9277426 9277487 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.3"; Scaffold001 rebuild exon 9277553 9277805 . - . gene_id "RvY_03358"; transcript_id "RvY_03358.3"; Scaffold001 rebuild transcript 9278690 9283613 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; gene_name "SETD1"; annotation "Histone-lysine N-methyltransferase SETD1A"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[SET]|[N-SET] COMPASS (Complex proteins associated with Set1p) component N"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; EC "EC2.1.1.43"; KO "K11422"; similar_genes "SET1A_HUMAN(e-value:8.6e-57;bit-score:218.0)"; Scaffold001 rebuild exon 9278690 9278863 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9279078 9279338 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9279539 9280099 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9280164 9280584 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9280653 9281098 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9281167 9281328 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9281429 9281934 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9282113 9282553 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9282946 9283219 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9283274 9283375 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild exon 9283440 9283613 . - . gene_id "RvY_03359"; transcript_id "RvY_03359.1"; Scaffold001 rebuild transcript 9284525 9285359 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9284525 9284898 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.1"; Scaffold001 rebuild exon 9284975 9285359 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.1"; Scaffold001 rebuild transcript 9285361 9286235 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.2"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9285361 9285462 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.2"; Scaffold001 rebuild exon 9285553 9285755 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.2"; Scaffold001 rebuild exon 9285836 9285910 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.2"; Scaffold001 rebuild exon 9286007 9286235 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.2"; Scaffold001 rebuild transcript 9284958 9285702 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.3"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9284958 9285325 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.3"; Scaffold001 rebuild exon 9285396 9285462 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.3"; Scaffold001 rebuild exon 9285553 9285702 . - . gene_id "RvY_03360"; transcript_id "RvY_03360.3"; Scaffold001 rebuild transcript 9286419 9287169 . - . gene_id "RvY_03361"; transcript_id "RvY_03361.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9286419 9286591 . - . gene_id "RvY_03361"; transcript_id "RvY_03361.1"; Scaffold001 rebuild exon 9286710 9286860 . - . gene_id "RvY_03361"; transcript_id "RvY_03361.1"; Scaffold001 rebuild exon 9286945 9287169 . - . gene_id "RvY_03361"; transcript_id "RvY_03361.1"; Scaffold001 rebuild transcript 9289749 9290841 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; annotation "hypothetical protein."; Pfam "[Troponin]"; similar_genes "TNNI_CHLNI(e-value:4.1e-14;bit-score:76.0)"; Scaffold001 rebuild exon 9289749 9289780 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; Scaffold001 rebuild exon 9289849 9289882 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; Scaffold001 rebuild exon 9289950 9290306 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; Scaffold001 rebuild exon 9290433 9290518 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; Scaffold001 rebuild exon 9290619 9290715 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; Scaffold001 rebuild exon 9290779 9290841 . + . gene_id "RvY_03362"; transcript_id "RvY_03362.1"; Scaffold001 rebuild transcript 9290450 9290970 . - . gene_id "RvY_03363"; transcript_id "RvY_03363.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9290450 9290533 . - . gene_id "RvY_03363"; transcript_id "RvY_03363.1"; Scaffold001 rebuild exon 9290599 9290970 . - . gene_id "RvY_03363"; transcript_id "RvY_03363.1"; Scaffold001 rebuild transcript 9291367 9294351 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; annotation "Transmembrane 9 superfamily member 2"; Pfam "[EMP70] Endomembrane protein 70"; similar_genes "(1)TM9S2_PONAB(e-value:4.3e-177;bit-score:617.0)(2)TM9S2_PONAB(e-value:2.1e-170;bit-score:595.0)"; Scaffold001 rebuild exon 9291367 9291416 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9291489 9291790 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9291946 9292067 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9292141 9292170 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9292239 9292398 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9292461 9292771 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9292839 9292994 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9293075 9293218 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9293276 9293425 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9293484 9293930 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild exon 9294220 9294351 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.1"; Scaffold001 rebuild transcript 9291475 9294351 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; annotation "Transmembrane 9 superfamily member 2"; Pfam "[EMP70] Endomembrane protein 70"; similar_genes "(1)TM9S2_PONAB(e-value:4.3e-177;bit-score:617.0)(2)TM9S2_PONAB(e-value:2.1e-170;bit-score:595.0)"; Scaffold001 rebuild exon 9291475 9291790 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9291946 9292067 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9292141 9292170 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9292239 9292398 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9292461 9292771 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9292839 9292994 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9293075 9293218 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9293276 9293425 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9293484 9293930 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild exon 9294220 9294351 . - . gene_id "RvY_03364"; transcript_id "RvY_03364.2"; Scaffold001 rebuild transcript 9295336 9297071 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; annotation "putative UPF0160 protein MYG1, mitochondrial"; Pfam "[UPF0160] Uncharacterised protein family (UPF0160)"; similar_genes "MYG1_MOUSE(e-value:7.1e-33;bit-score:138.0)"; Scaffold001 rebuild exon 9295336 9295341 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; Scaffold001 rebuild exon 9295399 9295685 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; Scaffold001 rebuild exon 9295793 9296131 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; Scaffold001 rebuild exon 9296197 9296275 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; Scaffold001 rebuild exon 9296437 9296741 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; Scaffold001 rebuild exon 9296840 9297071 . + . gene_id "RvY_03365"; transcript_id "RvY_03365.1"; Scaffold001 rebuild transcript 9297221 9298666 . - . gene_id "RvY_03366"; transcript_id "RvY_03366.1"; annotation "hypothetical protein."; Pfam "[MPP6] M-phase phosphoprotein 6"; Scaffold001 rebuild exon 9297221 9297497 . - . gene_id "RvY_03366"; transcript_id "RvY_03366.1"; Scaffold001 rebuild exon 9298014 9298093 . - . gene_id "RvY_03366"; transcript_id "RvY_03366.1"; Scaffold001 rebuild exon 9298161 9298254 . - . gene_id "RvY_03366"; transcript_id "RvY_03366.1"; Scaffold001 rebuild exon 9298347 9298477 . - . gene_id "RvY_03366"; transcript_id "RvY_03366.1"; Scaffold001 rebuild exon 9298604 9298666 . - . gene_id "RvY_03366"; transcript_id "RvY_03366.1"; Scaffold001 rebuild transcript 9299201 9301230 . + . gene_id "RvY_03367"; transcript_id "RvY_03367.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "EC2.4.1.-"; KO "K14412"; similar_genes "FUCTC_DROME(e-value:2.3e-10;bit-score:63.0)"; Scaffold001 rebuild exon 9299201 9299308 . + . gene_id "RvY_03367"; transcript_id "RvY_03367.1"; Scaffold001 rebuild exon 9299575 9300018 . + . gene_id "RvY_03367"; transcript_id "RvY_03367.1"; Scaffold001 rebuild exon 9300212 9300391 . + . gene_id "RvY_03367"; transcript_id "RvY_03367.1"; Scaffold001 rebuild exon 9300459 9300745 . + . gene_id "RvY_03367"; transcript_id "RvY_03367.1"; Scaffold001 rebuild exon 9300807 9301230 . + . gene_id "RvY_03367"; transcript_id "RvY_03367.1"; Scaffold001 rebuild transcript 9302021 9302413 . - . gene_id "RvY_03368"; transcript_id "RvY_03368.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9302021 9302413 . - . gene_id "RvY_03368"; transcript_id "RvY_03368.1"; Scaffold001 rebuild transcript 9302455 9302880 . - . gene_id "RvY_03369"; transcript_id "RvY_03369.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9302455 9302880 . - . gene_id "RvY_03369"; transcript_id "RvY_03369.1"; Scaffold001 rebuild transcript 9303497 9303718 . + . gene_id "RvY_03370"; transcript_id "RvY_03370.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9303497 9303718 . + . gene_id "RvY_03370"; transcript_id "RvY_03370.1"; Scaffold001 rebuild transcript 9304305 9304805 . - . gene_id "RvY_03371"; transcript_id "RvY_03371.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold001 rebuild exon 9304305 9304805 . - . gene_id "RvY_03371"; transcript_id "RvY_03371.1"; Scaffold001 rebuild transcript 9305662 9306693 . + . gene_id "RvY_03372"; transcript_id "RvY_03372.1"; annotation "hypothetical protein."; Pfam "[FUN14] FUN14 family"; Scaffold001 rebuild exon 9305662 9305788 . + . gene_id "RvY_03372"; transcript_id "RvY_03372.1"; Scaffold001 rebuild exon 9305855 9305996 . + . gene_id "RvY_03372"; transcript_id "RvY_03372.1"; Scaffold001 rebuild exon 9306057 9306132 . + . gene_id "RvY_03372"; transcript_id "RvY_03372.1"; Scaffold001 rebuild exon 9306370 9306552 . + . gene_id "RvY_03372"; transcript_id "RvY_03372.1"; Scaffold001 rebuild exon 9306616 9306693 . + . gene_id "RvY_03372"; transcript_id "RvY_03372.1"; Scaffold001 rebuild transcript 9307256 9309373 . - . gene_id "RvY_03373"; transcript_id "RvY_03373.1"; gene_name "b_cpa1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "sodium/hydrogen exchanger 3. This Hmm is specific for the eukaryotic members members of this family."; similar_genes "SL9A2_RAT(e-value:2.6e-09;bit-score:60.0)"; Scaffold001 rebuild exon 9307256 9307493 . - . gene_id "RvY_03373"; transcript_id "RvY_03373.1"; Scaffold001 rebuild exon 9307566 9308059 . - . gene_id "RvY_03373"; transcript_id "RvY_03373.1"; Scaffold001 rebuild exon 9308243 9308630 . - . gene_id "RvY_03373"; transcript_id "RvY_03373.1"; Scaffold001 rebuild exon 9308685 9309103 . - . gene_id "RvY_03373"; transcript_id "RvY_03373.1"; Scaffold001 rebuild exon 9309164 9309373 . - . gene_id "RvY_03373"; transcript_id "RvY_03373.1"; Scaffold001 rebuild transcript 9309417 9309807 . - . gene_id "RvY_03374"; transcript_id "RvY_03374.1"; gene_name "b_cpa1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "sodium/hydrogen exchanger 3. This Hmm is specific for the eukaryotic members members of this family."; similar_genes "SL9A5_HUMAN(e-value:2.4e-12;bit-score:70.0)"; Scaffold001 rebuild exon 9309417 9309629 . - . gene_id "RvY_03374"; transcript_id "RvY_03374.1"; Scaffold001 rebuild exon 9309685 9309807 . - . gene_id "RvY_03374"; transcript_id "RvY_03374.1"; Scaffold001 rebuild transcript 9311766 9315272 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; gene_name "(1)PCSK1"; annotation "Furin-like protease 1, isoforms 1/1-X/2"; Pfam "[Peptidase_S8] Subtilase family|(1)[P_proprotein] Proprotein convertase P-domain"; EC "(1)EC3.4.21.75|EC3.4.21.93(2)EC3.4.21.75"; KO "(1)K01359"; similar_genes "FUR11_DROME(e-value:1.2e-77;bit-score:287.0)"; Scaffold001 rebuild exon 9311766 9311927 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9312034 9312167 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9312343 9312500 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9312573 9312800 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9312886 9312913 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9312997 9313069 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9313123 9313295 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9313389 9313428 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9313513 9313716 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9313810 9313855 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9313923 9314011 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9314104 9314141 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9314204 9314396 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9314460 9314750 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9314883 9315005 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild exon 9315087 9315272 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.1"; Scaffold001 rebuild transcript 9312882 9315272 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; gene_name "(1)PCSK1"; annotation "Furin-like protease 1, isoforms 1/1-X/2"; Pfam "[Peptidase_S8] Subtilase family|(1)[P_proprotein] Proprotein convertase P-domain"; EC "(1)EC3.4.21.75|EC3.4.21.93(2)EC3.4.21.75"; KO "(1)K01359"; similar_genes "FUR11_DROME(e-value:1.2e-77;bit-score:287.0)"; Scaffold001 rebuild exon 9312882 9312913 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9312997 9313069 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9313123 9313295 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9313389 9313428 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9313513 9313716 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9313810 9313855 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9313923 9314011 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9314104 9314141 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9314204 9314396 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9314460 9314750 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9314883 9315005 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild exon 9315087 9315272 . - . gene_id "RvY_03375"; transcript_id "RvY_03375.2"; Scaffold001 rebuild transcript 9315935 9318752 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; annotation "hypothetical protein."; Pfam "[STOP] STOP protein"; Scaffold001 rebuild exon 9315935 9316075 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9316316 9316480 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9316639 9316737 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9316892 9317095 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9317168 9317374 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9317982 9318188 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9318291 9318494 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild exon 9318591 9318752 . - . gene_id "RvY_03376"; transcript_id "RvY_03376.1"; Scaffold001 rebuild transcript 9319069 9322424 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; gene_name "ggt"; annotation "gamma-glutamyltranspeptidase [EC:2.3.2.2]"; Pfam "[G_glu_transpept] Gamma-glutamyltranspeptidase"; EC "EC2.3.2.2"; KO "K00681"; similar_genes "GGT2_SCHPO(e-value:2.0e-11;bit-score:67.0)"; Scaffold001 rebuild exon 9319069 9319238 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9319308 9319421 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9319714 9319840 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9319909 9320011 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9320086 9320244 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9320304 9320392 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9320550 9320680 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9320805 9320892 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9320956 9321158 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9321251 9321367 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9321485 9321624 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9321686 9321837 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9321993 9322325 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild exon 9322422 9322424 . - . gene_id "RvY_03377"; transcript_id "RvY_03377.1"; Scaffold001 rebuild transcript 9323158 9323613 . - . gene_id "RvY_03378"; transcript_id "RvY_03378.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9323158 9323613 . - . gene_id "RvY_03378"; transcript_id "RvY_03378.1"; Scaffold001 rebuild transcript 9326445 9326868 . + . gene_id "RvY_03379"; transcript_id "RvY_03379.1"; gene_name "Cyt_c_Oxidase_VIb"; annotation "hypothetical protein."; Pfam "[COX6B] Cytochrome oxidase c subunit VIb"; CDD "Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex."; Scaffold001 rebuild exon 9326445 9326618 . + . gene_id "RvY_03379"; transcript_id "RvY_03379.1"; Scaffold001 rebuild exon 9326707 9326868 . + . gene_id "RvY_03379"; transcript_id "RvY_03379.1"; Scaffold001 rebuild transcript 9326939 9327304 . - . gene_id "RvY_03380"; transcript_id "RvY_03380.1"; annotation "hypothetical protein."; Scaffold001 rebuild exon 9326939 9327304 . - . gene_id "RvY_03380"; transcript_id "RvY_03380.1"; Scaffold001 rebuild transcript 9330628 9332878 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; annotation "hypothetical protein."; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit"; Scaffold001 rebuild exon 9330628 9330630 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9330702 9330973 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9331045 9331206 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9331278 9331629 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9331713 9332160 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9332216 9332337 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9332398 9332595 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold001 rebuild exon 9332654 9332878 . + . gene_id "RvY_03381"; transcript_id "RvY_03381.1"; Scaffold002 rebuild transcript 411 1809 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.1"; annotation "hypothetical protein."; Pfam "[Scramblase]"; similar_genes "(1)PLS1_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 411 449 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.1"; Scaffold002 rebuild exon 568 729 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.1"; Scaffold002 rebuild exon 822 983 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.1"; Scaffold002 rebuild exon 1046 1266 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.1"; Scaffold002 rebuild exon 1389 1809 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.1"; Scaffold002 rebuild transcript 1434 2048 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.2"; annotation "hypothetical protein."; Pfam "[Scramblase]"; similar_genes "(1)PLS1_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 1434 1824 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.2"; Scaffold002 rebuild exon 1912 2048 . - . gene_id "RvY_03382"; transcript_id "RvY_03382.2"; Scaffold002 rebuild transcript 2357 3593 . - . gene_id "RvY_03383"; transcript_id "RvY_03383.1"; annotation "hypothetical protein."; Pfam "[DOMON]"; Scaffold002 rebuild exon 2357 2749 . - . gene_id "RvY_03383"; transcript_id "RvY_03383.1"; Scaffold002 rebuild exon 2879 3046 . - . gene_id "RvY_03383"; transcript_id "RvY_03383.1"; Scaffold002 rebuild exon 3132 3593 . - . gene_id "RvY_03383"; transcript_id "RvY_03383.1"; Scaffold002 rebuild transcript 8720 8944 . + . gene_id "RvY_03384"; transcript_id "RvY_03384.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8720 8944 . + . gene_id "RvY_03384"; transcript_id "RvY_03384.1"; Scaffold002 rebuild transcript 13553 15602 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 13553 13609 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.1"; Scaffold002 rebuild exon 13678 14152 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.1"; Scaffold002 rebuild exon 14828 14880 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.1"; Scaffold002 rebuild exon 14949 15204 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.1"; Scaffold002 rebuild exon 15292 15602 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.1"; Scaffold002 rebuild transcript 9211 14375 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9211 9258 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.2"; Scaffold002 rebuild exon 12668 12898 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.2"; Scaffold002 rebuild exon 13523 13609 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.2"; Scaffold002 rebuild exon 13732 14152 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.2"; Scaffold002 rebuild exon 14281 14375 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.2"; Scaffold002 rebuild transcript 13553 14375 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 13553 13609 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.3"; Scaffold002 rebuild exon 13678 14152 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.3"; Scaffold002 rebuild exon 14281 14375 . + . gene_id "RvY_03385"; transcript_id "RvY_03385.3"; Scaffold002 rebuild transcript 11994 12823 . - . gene_id "RvY_03386"; transcript_id "RvY_03386.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 11994 12304 . - . gene_id "RvY_03386"; transcript_id "RvY_03386.1"; Scaffold002 rebuild exon 12367 12467 . - . gene_id "RvY_03386"; transcript_id "RvY_03386.1"; Scaffold002 rebuild exon 12524 12620 . - . gene_id "RvY_03386"; transcript_id "RvY_03386.1"; Scaffold002 rebuild exon 12709 12823 . - . gene_id "RvY_03386"; transcript_id "RvY_03386.1"; Scaffold002 rebuild transcript 15001 15195 . - . gene_id "RvY_03387"; transcript_id "RvY_03387.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 15001 15195 . - . gene_id "RvY_03387"; transcript_id "RvY_03387.1"; Scaffold002 rebuild transcript 17543 18832 . + . gene_id "RvY_03388"; transcript_id "RvY_03388.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 17543 17604 . + . gene_id "RvY_03388"; transcript_id "RvY_03388.1"; Scaffold002 rebuild exon 18613 18832 . + . gene_id "RvY_03388"; transcript_id "RvY_03388.1"; Scaffold002 rebuild transcript 19038 19609 . + . gene_id "RvY_03389"; transcript_id "RvY_03389.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 19038 19101 . + . gene_id "RvY_03389"; transcript_id "RvY_03389.1"; Scaffold002 rebuild exon 19234 19367 . + . gene_id "RvY_03389"; transcript_id "RvY_03389.1"; Scaffold002 rebuild exon 19469 19609 . + . gene_id "RvY_03389"; transcript_id "RvY_03389.1"; Scaffold002 rebuild transcript 19681 20285 . + . gene_id "RvY_03390"; transcript_id "RvY_03390.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 19681 19902 . + . gene_id "RvY_03390"; transcript_id "RvY_03390.1"; Scaffold002 rebuild exon 20184 20285 . + . gene_id "RvY_03390"; transcript_id "RvY_03390.1"; Scaffold002 rebuild transcript 20764 21290 . + . gene_id "RvY_03391"; transcript_id "RvY_03391.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 20764 21201 . + . gene_id "RvY_03391"; transcript_id "RvY_03391.1"; Scaffold002 rebuild exon 21258 21290 . + . gene_id "RvY_03391"; transcript_id "RvY_03391.1"; Scaffold002 rebuild transcript 21292 23476 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.1"; gene_name "CCL1"; annotation "hypothetical protein."; Pfam "[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]"; KO "K15188"; similar_genes "CCNT1_MOUSE(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 21292 21975 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.1"; Scaffold002 rebuild exon 22144 22416 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.1"; Scaffold002 rebuild exon 22598 22888 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.1"; Scaffold002 rebuild exon 23267 23476 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.1"; Scaffold002 rebuild transcript 21292 22512 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.2"; gene_name "CCL1"; annotation "hypothetical protein."; Pfam "[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]"; KO "K15188"; similar_genes "CCNT1_MOUSE(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 21292 21975 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.2"; Scaffold002 rebuild exon 22144 22512 . + . gene_id "RvY_03392"; transcript_id "RvY_03392.2"; Scaffold002 rebuild transcript 25339 29329 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; Scaffold002 rebuild exon 25339 25521 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 25742 25912 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 26090 26239 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 26341 26493 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 26634 26744 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 26822 27109 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 27173 27532 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild exon 27812 29329 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.1"; Scaffold002 rebuild transcript 25339 28643 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; Scaffold002 rebuild exon 25339 25521 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 25742 25912 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 26090 26239 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 26341 26493 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 26634 26744 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 26822 27109 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 27173 27532 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 27812 28277 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild exon 28489 28643 . + . gene_id "RvY_03393"; transcript_id "RvY_03393.3"; Scaffold002 rebuild transcript 30099 31304 . + . gene_id "RvY_03394"; transcript_id "RvY_03394.1"; gene_name "B3GNT3"; annotation "beta-1,3-N-acetylglucosaminyltransferase 3 [EC:2.4.1.-]"; Pfam "[Galactosyl_T] Galactosyltransferase"; EC "EC2.4.1.-"; KO "K07970"; Scaffold002 rebuild exon 30099 31304 . + . gene_id "RvY_03394"; transcript_id "RvY_03394.1"; Scaffold002 rebuild transcript 32365 33718 . - . gene_id "RvY_03395"; transcript_id "RvY_03395.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 32365 33292 . - . gene_id "RvY_03395"; transcript_id "RvY_03395.1"; Scaffold002 rebuild exon 33371 33567 . - . gene_id "RvY_03395"; transcript_id "RvY_03395.1"; Scaffold002 rebuild exon 33662 33718 . - . gene_id "RvY_03395"; transcript_id "RvY_03395.1"; Scaffold002 rebuild transcript 34022 34837 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 34022 34080 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.1"; Scaffold002 rebuild exon 34172 34348 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.1"; Scaffold002 rebuild exon 34476 34685 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.1"; Scaffold002 rebuild exon 34750 34837 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.1"; Scaffold002 rebuild transcript 34155 34837 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 34155 34348 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.2"; Scaffold002 rebuild exon 34476 34685 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.2"; Scaffold002 rebuild exon 34750 34837 . - . gene_id "RvY_03396"; transcript_id "RvY_03396.2"; Scaffold002 rebuild transcript 35356 36180 . + . gene_id "RvY_03397"; transcript_id "RvY_03397.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 35356 35483 . + . gene_id "RvY_03397"; transcript_id "RvY_03397.1"; Scaffold002 rebuild exon 35853 35960 . + . gene_id "RvY_03397"; transcript_id "RvY_03397.1"; Scaffold002 rebuild exon 36024 36180 . + . gene_id "RvY_03397"; transcript_id "RvY_03397.1"; Scaffold002 rebuild transcript 37719 38524 . - . gene_id "RvY_03398"; transcript_id "RvY_03398.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 37719 37777 . - . gene_id "RvY_03398"; transcript_id "RvY_03398.1"; Scaffold002 rebuild exon 37842 38021 . - . gene_id "RvY_03398"; transcript_id "RvY_03398.1"; Scaffold002 rebuild exon 38165 38365 . - . gene_id "RvY_03398"; transcript_id "RvY_03398.1"; Scaffold002 rebuild exon 38476 38524 . - . gene_id "RvY_03398"; transcript_id "RvY_03398.1"; Scaffold002 rebuild transcript 39282 40003 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 39282 39325 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.1"; Scaffold002 rebuild exon 39396 39575 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.1"; Scaffold002 rebuild exon 39681 39869 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.1"; Scaffold002 rebuild exon 39949 40003 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.1"; Scaffold002 rebuild transcript 39282 39940 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 39282 39325 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.2"; Scaffold002 rebuild exon 39396 39575 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.2"; Scaffold002 rebuild exon 39681 39869 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.2"; Scaffold002 rebuild exon 39934 39940 . - . gene_id "RvY_03399"; transcript_id "RvY_03399.2"; Scaffold002 rebuild transcript 40711 41953 . + . gene_id "RvY_03400"; transcript_id "RvY_03400.1"; gene_name "SIRT4"; annotation "NAD-dependent deacetylase sirtuin 4 [EC:3.5.1.-]"; Pfam "[SIR2] Sir2 family"; CDD "SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span."; EC "EC2.4.2.-|EC3.5.1.-"; KO "K11414"; similar_genes "SIRT4_MOUSE(e-value:1.9e-18;bit-score:90.0)"; Scaffold002 rebuild exon 40711 41532 . + . gene_id "RvY_03400"; transcript_id "RvY_03400.1"; Scaffold002 rebuild exon 41786 41953 . + . gene_id "RvY_03400"; transcript_id "RvY_03400.1"; Scaffold002 rebuild transcript 42053 43748 . - . gene_id "RvY_03401"; transcript_id "RvY_03401.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; Scaffold002 rebuild exon 42053 42814 . - . gene_id "RvY_03401"; transcript_id "RvY_03401.1"; Scaffold002 rebuild exon 42883 43375 . - . gene_id "RvY_03401"; transcript_id "RvY_03401.1"; Scaffold002 rebuild exon 43462 43748 . - . gene_id "RvY_03401"; transcript_id "RvY_03401.1"; Scaffold002 rebuild transcript 44267 44566 . - . gene_id "RvY_03402"; transcript_id "RvY_03402.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 44267 44566 . - . gene_id "RvY_03402"; transcript_id "RvY_03402.1"; Scaffold002 rebuild transcript 45506 46423 . + . gene_id "RvY_03403"; transcript_id "RvY_03403.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 45506 45669 . + . gene_id "RvY_03403"; transcript_id "RvY_03403.1"; Scaffold002 rebuild exon 46056 46209 . + . gene_id "RvY_03403"; transcript_id "RvY_03403.1"; Scaffold002 rebuild exon 46322 46423 . + . gene_id "RvY_03403"; transcript_id "RvY_03403.1"; Scaffold002 rebuild transcript 47456 51057 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; gene_name "PIP5K"; annotation "Phosphatidylinositol-4-phosphate 5-kinase type-1 beta"; Pfam "[PIP5K] Phosphatidylinositol-4-phosphate 5-Kinase"; CDD "Phosphatidylinositol phosphate kinases."; EC "EC2.7.1.68"; KO "K00889"; similar_genes "PI51B_HUMAN(e-value:3.2e-88;bit-score:322.0)"; Scaffold002 rebuild exon 47456 47467 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 47552 47792 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 47868 48185 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 48292 48453 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 48528 48669 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 48998 49315 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 49648 49947 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 50006 50201 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 50265 50513 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild exon 50764 51057 . - . gene_id "RvY_03404"; transcript_id "RvY_03404.1"; Scaffold002 rebuild transcript 52647 56434 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; gene_name "(1)eIF-38"; annotation "(1)Eukaryotic translation initiation factor 3 subunit C(2)putative Eukaryotic translation initiation factor 3 subunit C"; Pfam "(1)[PCI]|[eIF-3c_N] Eukaryotic translation initiation factor 3 subunit 8 N-terminus"; KO "(1)K03252"; similar_genes "(1)EIF3C_XENLA(e-value:2.6e-79;bit-score:293.0)(2)EIF3C_DANRE(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 52647 53113 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 53317 53626 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 53821 54420 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 54487 54615 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 54700 54955 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 55019 55209 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 55424 55810 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild exon 56030 56434 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.1"; Scaffold002 rebuild transcript 52647 54459 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.2"; gene_name "(1)eIF-38"; annotation "(1)Eukaryotic translation initiation factor 3 subunit C(2)putative Eukaryotic translation initiation factor 3 subunit C"; Pfam "(1)[PCI]|[eIF-3c_N] Eukaryotic translation initiation factor 3 subunit 8 N-terminus"; KO "(1)K03252"; similar_genes "(1)EIF3C_XENLA(e-value:2.6e-79;bit-score:293.0)(2)EIF3C_DANRE(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 52647 53113 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.2"; Scaffold002 rebuild exon 53317 53626 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.2"; Scaffold002 rebuild exon 53821 54459 . + . gene_id "RvY_03405"; transcript_id "RvY_03405.2"; Scaffold002 rebuild transcript 56758 58399 . - . gene_id "RvY_03406"; transcript_id "RvY_03406.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 56758 57739 . - . gene_id "RvY_03406"; transcript_id "RvY_03406.1"; Scaffold002 rebuild exon 57888 58399 . - . gene_id "RvY_03406"; transcript_id "RvY_03406.1"; Scaffold002 rebuild transcript 59269 61253 . + . gene_id "RvY_03407"; transcript_id "RvY_03407.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 59269 60082 . + . gene_id "RvY_03407"; transcript_id "RvY_03407.1"; Scaffold002 rebuild exon 60287 60660 . + . gene_id "RvY_03407"; transcript_id "RvY_03407.1"; Scaffold002 rebuild exon 60742 60804 . + . gene_id "RvY_03407"; transcript_id "RvY_03407.1"; Scaffold002 rebuild exon 61053 61253 . + . gene_id "RvY_03407"; transcript_id "RvY_03407.1"; Scaffold002 rebuild transcript 61483 63054 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; gene_name "prsA"; annotation "Ribose-phosphate pyrophosphokinase 1"; Pfam "[Pribosyltran_N] N-terminal domain of ribose phosphate pyrophosphokinase|[Pribosyltran] Phosphoribosyl transferase domain"; CDD "ribose-phosphate pyrophosphokinase; Provisional"; EC "EC2.7.6.1"; KO "K00948"; similar_genes "PRPS1_HUMAN(e-value:3.0e-129;bit-score:458.0)"; Scaffold002 rebuild exon 61483 61575 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 61648 61810 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 61879 61912 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 61989 62128 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 62214 62338 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 62408 62506 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 62627 62810 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild exon 62870 63054 . - . gene_id "RvY_03408"; transcript_id "RvY_03408.1"; Scaffold002 rebuild transcript 63542 64623 . + . gene_id "RvY_03409"; transcript_id "RvY_03409.1"; gene_name "RP-L22e"; annotation "putative 60S ribosomal protein L22-like 1"; Pfam "[Ribosomal_L22e] Ribosomal L22e protein family"; KO "K02891"; similar_genes "RL22L_MOUSE(e-value:1.7e-36;bit-score:150.0)"; Scaffold002 rebuild exon 63542 63556 . + . gene_id "RvY_03409"; transcript_id "RvY_03409.1"; Scaffold002 rebuild exon 63615 64148 . + . gene_id "RvY_03409"; transcript_id "RvY_03409.1"; Scaffold002 rebuild exon 64259 64386 . + . gene_id "RvY_03409"; transcript_id "RvY_03409.1"; Scaffold002 rebuild exon 64476 64623 . + . gene_id "RvY_03409"; transcript_id "RvY_03409.1"; Scaffold002 rebuild transcript 65295 66335 . - . gene_id "RvY_03410"; transcript_id "RvY_03410.1"; annotation "hypothetical protein."; Pfam "[Scs3p] Inositol phospholipid synthesis and fat-storage-inducing TM"; Scaffold002 rebuild exon 65295 66335 . - . gene_id "RvY_03410"; transcript_id "RvY_03410.1"; Scaffold002 rebuild transcript 67385 67564 . + . gene_id "RvY_03411"; transcript_id "RvY_03411.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 67385 67564 . + . gene_id "RvY_03411"; transcript_id "RvY_03411.1"; Scaffold002 rebuild transcript 68788 69704 . - . gene_id "RvY_03412"; transcript_id "RvY_03412.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 68788 68957 . - . gene_id "RvY_03412"; transcript_id "RvY_03412.1"; Scaffold002 rebuild exon 69590 69704 . - . gene_id "RvY_03412"; transcript_id "RvY_03412.1"; Scaffold002 rebuild transcript 73586 75542 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 73586 73717 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; Scaffold002 rebuild exon 73864 74005 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; Scaffold002 rebuild exon 74090 74697 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; Scaffold002 rebuild exon 74760 74927 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; Scaffold002 rebuild exon 74998 75202 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; Scaffold002 rebuild exon 75262 75542 . + . gene_id "RvY_03413"; transcript_id "RvY_03413.1"; Scaffold002 rebuild transcript 76348 76935 . - . gene_id "RvY_03414"; transcript_id "RvY_03414.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 76348 76935 . - . gene_id "RvY_03414"; transcript_id "RvY_03414.1"; Scaffold002 rebuild transcript 76980 79100 . - . gene_id "RvY_03415"; transcript_id "RvY_03415.1"; annotation "hypothetical protein."; Pfam "[DUF2828]"; similar_genes "YL728_MIMIV(e-value:2.0e-09;bit-score:60.0)"; Scaffold002 rebuild exon 76980 77552 . - . gene_id "RvY_03415"; transcript_id "RvY_03415.1"; Scaffold002 rebuild exon 77620 77867 . - . gene_id "RvY_03415"; transcript_id "RvY_03415.1"; Scaffold002 rebuild exon 77923 78099 . - . gene_id "RvY_03415"; transcript_id "RvY_03415.1"; Scaffold002 rebuild exon 78158 78572 . - . gene_id "RvY_03415"; transcript_id "RvY_03415.1"; Scaffold002 rebuild exon 78759 79100 . - . gene_id "RvY_03415"; transcript_id "RvY_03415.1"; Scaffold002 rebuild transcript 81096 81966 . - . gene_id "RvY_03416"; transcript_id "RvY_03416.1"; gene_name "PTB"; annotation "hypothetical protein."; CDD "Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether."; Scaffold002 rebuild exon 81096 81385 . - . gene_id "RvY_03416"; transcript_id "RvY_03416.1"; Scaffold002 rebuild exon 81501 81966 . - . gene_id "RvY_03416"; transcript_id "RvY_03416.1"; Scaffold002 rebuild transcript 85038 86423 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.1"; annotation "hypothetical protein."; similar_genes "(1)Y6146_DICDI(e-value:7.6e-07;bit-score:52.0)(2)KR161_MOUSE(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 85038 85098 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.1"; Scaffold002 rebuild exon 85288 85410 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.1"; Scaffold002 rebuild exon 85986 86171 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.1"; Scaffold002 rebuild exon 86269 86423 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.1"; Scaffold002 rebuild transcript 85038 86188 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.2"; annotation "hypothetical protein."; similar_genes "(1)Y6146_DICDI(e-value:7.6e-07;bit-score:52.0)(2)KR161_MOUSE(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 85038 85098 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.2"; Scaffold002 rebuild exon 85288 85410 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.2"; Scaffold002 rebuild exon 85986 86188 . + . gene_id "RvY_03417"; transcript_id "RvY_03417.2"; Scaffold002 rebuild transcript 86923 87536 . + . gene_id "RvY_03418"; transcript_id "RvY_03418.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 86923 87129 . + . gene_id "RvY_03418"; transcript_id "RvY_03418.1"; Scaffold002 rebuild exon 87213 87536 . + . gene_id "RvY_03418"; transcript_id "RvY_03418.1"; Scaffold002 rebuild transcript 88227 89273 . - . gene_id "RvY_03419"; transcript_id "RvY_03419.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 88227 88594 . - . gene_id "RvY_03419"; transcript_id "RvY_03419.1"; Scaffold002 rebuild exon 88755 89058 . - . gene_id "RvY_03419"; transcript_id "RvY_03419.1"; Scaffold002 rebuild exon 89163 89273 . - . gene_id "RvY_03419"; transcript_id "RvY_03419.1"; Scaffold002 rebuild transcript 90099 91217 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.1"; annotation "hypothetical protein."; Pfam "[DUF1151]"; Scaffold002 rebuild exon 90099 90363 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.1"; Scaffold002 rebuild exon 90438 90594 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.1"; Scaffold002 rebuild exon 90926 91217 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.1"; Scaffold002 rebuild transcript 90099 95302 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.2"; annotation "hypothetical protein."; Pfam "[DUF1151]"; Scaffold002 rebuild exon 90099 90363 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.2"; Scaffold002 rebuild exon 90438 90594 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.2"; Scaffold002 rebuild exon 93941 94168 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.2"; Scaffold002 rebuild exon 95242 95302 . - . gene_id "RvY_03420"; transcript_id "RvY_03420.2"; Scaffold002 rebuild transcript 92035 93683 . + . gene_id "RvY_03421"; transcript_id "RvY_03421.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 92035 92056 . + . gene_id "RvY_03421"; transcript_id "RvY_03421.1"; Scaffold002 rebuild exon 93394 93683 . + . gene_id "RvY_03421"; transcript_id "RvY_03421.1"; Scaffold002 rebuild transcript 95302 97265 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; gene_name "K06883"; annotation "putative GPN-loop GTPase 1 homolog"; Pfam "[FeoB_N] Ferrous iron transport protein B|[ATP_bind_1] Conserved hypothetical ATP binding protein|[GTP_EFTU] Elongation factor Tu GTP binding domain"; KO "K06883"; similar_genes "GPN1_CAEEL(e-value:6.1e-30;bit-score:129.0)"; Scaffold002 rebuild exon 95302 95381 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 95528 95702 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 95816 95938 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 96004 96291 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 96368 96551 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 96687 96726 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 96905 96998 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild exon 97062 97265 . - . gene_id "RvY_03422"; transcript_id "RvY_03422.1"; Scaffold002 rebuild transcript 98224 99188 . + . gene_id "RvY_03423"; transcript_id "RvY_03423.1"; gene_name "ADPRHL2"; annotation "poly(ADP-ribose) glycohydrolase ARH3 [EC:3.2.1.143]"; Pfam "[ADP_ribosyl_GH] ADP-ribosylglycohydrolase"; EC "EC3.2.1.143"; KO "K11687"; Scaffold002 rebuild exon 98224 98413 . + . gene_id "RvY_03423"; transcript_id "RvY_03423.1"; Scaffold002 rebuild exon 98466 98568 . + . gene_id "RvY_03423"; transcript_id "RvY_03423.1"; Scaffold002 rebuild exon 98637 98853 . + . gene_id "RvY_03423"; transcript_id "RvY_03423.1"; Scaffold002 rebuild exon 99042 99188 . + . gene_id "RvY_03423"; transcript_id "RvY_03423.1"; Scaffold002 rebuild transcript 99405 99749 . + . gene_id "RvY_03424"; transcript_id "RvY_03424.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 99405 99749 . + . gene_id "RvY_03424"; transcript_id "RvY_03424.1"; Scaffold002 rebuild transcript 100385 103318 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; gene_name "sulP"; annotation "putative Sodium-independent sulfate anion transporter"; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; similar_genes "S2611_HUMAN(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 100385 100732 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; Scaffold002 rebuild exon 100796 101006 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; Scaffold002 rebuild exon 101482 101653 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; Scaffold002 rebuild exon 101731 101849 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; Scaffold002 rebuild exon 101931 102266 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; Scaffold002 rebuild exon 102327 103318 . + . gene_id "RvY_03425"; transcript_id "RvY_03425.1"; Scaffold002 rebuild transcript 103950 104192 . + . gene_id "RvY_03426"; transcript_id "RvY_03426.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 103950 104192 . + . gene_id "RvY_03426"; transcript_id "RvY_03426.1"; Scaffold002 rebuild transcript 104403 104666 . + . gene_id "RvY_03427"; transcript_id "RvY_03427.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 104403 104666 . + . gene_id "RvY_03427"; transcript_id "RvY_03427.1"; Scaffold002 rebuild transcript 106598 107402 . + . gene_id "RvY_03428"; transcript_id "RvY_03428.1"; gene_name "HLH"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins."; Scaffold002 rebuild exon 106598 106798 . + . gene_id "RvY_03428"; transcript_id "RvY_03428.1"; Scaffold002 rebuild exon 107004 107402 . + . gene_id "RvY_03428"; transcript_id "RvY_03428.1"; Scaffold002 rebuild transcript 108512 109231 . + . gene_id "RvY_03429"; transcript_id "RvY_03429.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 108512 108614 . + . gene_id "RvY_03429"; transcript_id "RvY_03429.1"; Scaffold002 rebuild exon 108765 109231 . + . gene_id "RvY_03429"; transcript_id "RvY_03429.1"; Scaffold002 rebuild transcript 108933 109256 . + . gene_id "RvY_03429"; transcript_id "RvY_03429.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 108933 109256 . + . gene_id "RvY_03429"; transcript_id "RvY_03429.2"; Scaffold002 rebuild transcript 111842 112340 . + . gene_id "RvY_03430"; transcript_id "RvY_03430.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 111842 112019 . + . gene_id "RvY_03430"; transcript_id "RvY_03430.1"; Scaffold002 rebuild exon 112117 112340 . + . gene_id "RvY_03430"; transcript_id "RvY_03430.1"; Scaffold002 rebuild transcript 113344 118000 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; gene_name "POMGNT1"; annotation "beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.-]"; Pfam "[GNT-I] GNT-I family"; CDD "GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13."; EC "EC2.4.1.-"; KO "K09666"; Scaffold002 rebuild exon 113344 113410 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 113510 113638 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 113714 113878 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 113955 114095 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 114299 114425 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 114491 114705 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 114935 115294 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 115545 115718 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 115777 115971 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 116111 116497 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 116725 116812 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 116915 117121 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 117180 117296 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 117554 117637 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild exon 117940 118000 . - . gene_id "RvY_03431"; transcript_id "RvY_03431.1"; Scaffold002 rebuild transcript 118158 118490 . + . gene_id "RvY_03432"; transcript_id "RvY_03432.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 118158 118490 . + . gene_id "RvY_03432"; transcript_id "RvY_03432.1"; Scaffold002 rebuild transcript 119297 121786 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; gene_name "RUVBL2"; annotation "RuvB-like 2"; Pfam "[TIP49] TIP49 C-terminus|[AAA_22] AAA domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "DNA helicase TIP49, TBP-interacting protein [Transcription]"; EC "EC3.6.1.-"; KO "K11338"; similar_genes "RUVB2_DANRE(e-value:8.4e-159;bit-score:557.0)"; Scaffold002 rebuild exon 119297 119305 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 119531 119585 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 119648 119772 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 119945 120017 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 120086 120215 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 120276 120449 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 120519 120736 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 120798 120892 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 120960 121078 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 121178 121297 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 121364 121493 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild exon 121595 121786 . + . gene_id "RvY_03433"; transcript_id "RvY_03433.1"; Scaffold002 rebuild transcript 122441 122908 . - . gene_id "RvY_03434"; transcript_id "RvY_03434.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 122441 122682 . - . gene_id "RvY_03434"; transcript_id "RvY_03434.1"; Scaffold002 rebuild exon 122758 122908 . - . gene_id "RvY_03434"; transcript_id "RvY_03434.1"; Scaffold002 rebuild transcript 123638 130711 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; annotation "hypothetical protein."; Pfam "[TUDOR] Tudor domain"; Scaffold002 rebuild exon 123638 123691 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 123892 124112 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 124447 124581 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 124654 124707 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 124786 124974 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 125044 125182 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 129376 129668 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 129739 129948 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 130185 130432 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild exon 130494 130711 . + . gene_id "RvY_03435"; transcript_id "RvY_03435.1"; Scaffold002 rebuild transcript 126435 126947 . - . gene_id "RvY_03436"; transcript_id "RvY_03436.1"; gene_name "(1)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 126435 126550 . - . gene_id "RvY_03436"; transcript_id "RvY_03436.1"; Scaffold002 rebuild exon 126656 126947 . - . gene_id "RvY_03436"; transcript_id "RvY_03436.1"; Scaffold002 rebuild transcript 126884 127189 . - . gene_id "RvY_03436"; transcript_id "RvY_03436.2"; gene_name "(1)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 126884 127189 . - . gene_id "RvY_03436"; transcript_id "RvY_03436.2"; Scaffold002 rebuild transcript 127917 128727 . - . gene_id "RvY_03437"; transcript_id "RvY_03437.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 127917 128153 . - . gene_id "RvY_03437"; transcript_id "RvY_03437.1"; Scaffold002 rebuild exon 128308 128727 . - . gene_id "RvY_03437"; transcript_id "RvY_03437.1"; Scaffold002 rebuild transcript 128759 128980 . - . gene_id "RvY_03438"; transcript_id "RvY_03438.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 128759 128980 . - . gene_id "RvY_03438"; transcript_id "RvY_03438.1"; Scaffold002 rebuild transcript 132978 140565 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; annotation "hypothetical protein."; Pfam "[PLAC] PLAC (protease and lacunin) domain|[ADAM_spacer1] ADAM-TS Spacer 1|[TSP_1] Thrombospondin type 1 domain"; EC "(2)EC3.4.24.14"; similar_genes "(1)ATL2_HUMAN(e-value:5.1e-08;bit-score:56.0)(2)ATS2_BOVIN(e-value:3.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 132978 133157 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 133503 134004 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 134358 134545 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 136242 136446 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 136594 136772 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 136899 137308 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 137596 137806 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 137915 138088 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 138161 138331 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 138630 139185 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 139462 139791 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild exon 139865 140565 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.1"; Scaffold002 rebuild transcript 135969 140565 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; annotation "hypothetical protein."; Pfam "[PLAC] PLAC (protease and lacunin) domain|[ADAM_spacer1] ADAM-TS Spacer 1|[TSP_1] Thrombospondin type 1 domain"; EC "(2)EC3.4.24.14"; similar_genes "(1)ATL2_HUMAN(e-value:5.1e-08;bit-score:56.0)(2)ATS2_BOVIN(e-value:3.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 135969 136004 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 136242 136446 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 136594 136772 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 136899 137308 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 137596 137806 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 137915 138088 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 138161 138331 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 138630 139185 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 139462 139791 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild exon 139865 140565 . + . gene_id "RvY_03439"; transcript_id "RvY_03439.2"; Scaffold002 rebuild transcript 134988 135970 . - . gene_id "RvY_03440"; transcript_id "RvY_03440.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 134988 135109 . - . gene_id "RvY_03440"; transcript_id "RvY_03440.1"; Scaffold002 rebuild exon 135766 135970 . - . gene_id "RvY_03440"; transcript_id "RvY_03440.1"; Scaffold002 rebuild transcript 141423 142204 . + . gene_id "RvY_03441"; transcript_id "RvY_03441.1"; annotation "hypothetical protein."; Pfam "[zf-C4H2] Zinc finger-containing protein"; Scaffold002 rebuild exon 141423 141470 . + . gene_id "RvY_03441"; transcript_id "RvY_03441.1"; Scaffold002 rebuild exon 141616 141840 . + . gene_id "RvY_03441"; transcript_id "RvY_03441.1"; Scaffold002 rebuild exon 142040 142204 . + . gene_id "RvY_03441"; transcript_id "RvY_03441.1"; Scaffold002 rebuild transcript 143492 144060 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; Scaffold002 rebuild exon 143492 143979 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.1"; Scaffold002 rebuild exon 144042 144060 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.1"; Scaffold002 rebuild transcript 142951 144060 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.2"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; Scaffold002 rebuild exon 142951 142974 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.2"; Scaffold002 rebuild exon 143525 143979 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.2"; Scaffold002 rebuild exon 144042 144060 . + . gene_id "RvY_03442"; transcript_id "RvY_03442.2"; Scaffold002 rebuild transcript 144821 150897 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; gene_name "PLD"; annotation "phospholipase D [EC:3.1.4.4]"; Pfam "[PLDc] Phospholipase D Active site motif|[PLDc_2] PLD-like domain"; CDD "Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are Scaffold002 rebuild exon 144821 144847 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 145060 145257 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 145503 145647 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 145711 145996 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 146094 146183 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 146297 146462 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 146732 146965 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 147049 147167 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 147267 147347 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 147413 147507 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 147775 147833 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 147909 148121 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 148203 148361 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 148486 148593 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 148922 149384 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 149655 149893 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 149961 150138 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 150232 150427 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild exon 150696 150897 . - . gene_id "RvY_03443"; transcript_id "RvY_03443.1"; Scaffold002 rebuild transcript 152979 153527 . - . gene_id "RvY_03444"; transcript_id "RvY_03444.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 152979 153527 . - . gene_id "RvY_03444"; transcript_id "RvY_03444.1"; Scaffold002 rebuild transcript 153769 154209 . - . gene_id "RvY_03445"; transcript_id "RvY_03445.1"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain"; Scaffold002 rebuild exon 153769 154209 . - . gene_id "RvY_03445"; transcript_id "RvY_03445.1"; Scaffold002 rebuild transcript 154454 156631 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold002 rebuild exon 154454 154589 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 154911 155117 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 155216 155315 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 155428 155532 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 155650 155794 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 155866 155964 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 156033 156070 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild exon 156343 156631 . + . gene_id "RvY_03446"; transcript_id "RvY_03446.1"; Scaffold002 rebuild transcript 156781 157161 . + . gene_id "RvY_03447"; transcript_id "RvY_03447.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 156781 157161 . + . gene_id "RvY_03447"; transcript_id "RvY_03447.1"; Scaffold002 rebuild transcript 159860 160051 . + . gene_id "RvY_03448"; transcript_id "RvY_03448.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 159860 160051 . + . gene_id "RvY_03448"; transcript_id "RvY_03448.1"; Scaffold002 rebuild transcript 160159 161114 . - . gene_id "RvY_03449"; transcript_id "RvY_03449.1"; annotation "hypothetical protein."; Pfam "[DNA_pol_B_2] DNA polymerase type B, organellar and viral"; Scaffold002 rebuild exon 160159 160686 . - . gene_id "RvY_03449"; transcript_id "RvY_03449.1"; Scaffold002 rebuild exon 160808 160900 . - . gene_id "RvY_03449"; transcript_id "RvY_03449.1"; Scaffold002 rebuild exon 161034 161114 . - . gene_id "RvY_03449"; transcript_id "RvY_03449.1"; Scaffold002 rebuild transcript 161328 162622 . - . gene_id "RvY_03450"; transcript_id "RvY_03450.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 161328 161563 . - . gene_id "RvY_03450"; transcript_id "RvY_03450.1"; Scaffold002 rebuild exon 161641 161774 . - . gene_id "RvY_03450"; transcript_id "RvY_03450.1"; Scaffold002 rebuild exon 161964 162622 . - . gene_id "RvY_03450"; transcript_id "RvY_03450.1"; Scaffold002 rebuild transcript 165430 169424 . - . gene_id "RvY_03451"; transcript_id "RvY_03451.1"; gene_name "Trp_dioxygenase"; annotation "hypothetical protein."; Pfam "[Trp_dioxygenase] Tryptophan 2,3-dioxygenase"; CDD "Tryptophan 2,3-dioxygenase."; Scaffold002 rebuild exon 165430 165933 . - . gene_id "RvY_03451"; transcript_id "RvY_03451.1"; Scaffold002 rebuild exon 167923 168679 . - . gene_id "RvY_03451"; transcript_id "RvY_03451.1"; Scaffold002 rebuild exon 168943 169424 . - . gene_id "RvY_03451"; transcript_id "RvY_03451.1"; Scaffold002 rebuild transcript 169767 172040 . - . gene_id "RvY_03452"; transcript_id "RvY_03452.1"; gene_name "ADRB2"; annotation "adrenergic receptor, beta 2"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04142"; similar_genes "5HT1B_CAVPO(e-value:1.1e-20;bit-score:98.0)"; Scaffold002 rebuild exon 169767 170089 . - . gene_id "RvY_03452"; transcript_id "RvY_03452.1"; Scaffold002 rebuild exon 170301 170346 . - . gene_id "RvY_03452"; transcript_id "RvY_03452.1"; Scaffold002 rebuild exon 170431 171123 . - . gene_id "RvY_03452"; transcript_id "RvY_03452.1"; Scaffold002 rebuild exon 171822 172040 . - . gene_id "RvY_03452"; transcript_id "RvY_03452.1"; Scaffold002 rebuild transcript 172959 173874 . - . gene_id "RvY_03453"; transcript_id "RvY_03453.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 172959 173289 . - . gene_id "RvY_03453"; transcript_id "RvY_03453.1"; Scaffold002 rebuild exon 173741 173874 . - . gene_id "RvY_03453"; transcript_id "RvY_03453.1"; Scaffold002 rebuild transcript 175505 175945 . + . gene_id "RvY_03454"; transcript_id "RvY_03454.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 175505 175945 . + . gene_id "RvY_03454"; transcript_id "RvY_03454.1"; Scaffold002 rebuild transcript 176879 178003 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.1"; gene_name "(1)DNAJC12"; annotation "(1)putative DnaJ homolog subfamily C member 12(2)hypothetical protein."; Pfam "[DnaJ]"; KO "(1)K09532"; similar_genes "(1)DJC12_MOUSE(e-value:9.1e-29;bit-score:125.0)"; Scaffold002 rebuild exon 176879 177097 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.1"; Scaffold002 rebuild exon 177170 177209 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.1"; Scaffold002 rebuild exon 177395 177480 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.1"; Scaffold002 rebuild exon 177756 177848 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.1"; Scaffold002 rebuild exon 177926 178003 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.1"; Scaffold002 rebuild transcript 176879 177611 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.2"; gene_name "(1)DNAJC12"; annotation "(1)putative DnaJ homolog subfamily C member 12(2)hypothetical protein."; Pfam "[DnaJ]"; KO "(1)K09532"; similar_genes "(1)DJC12_MOUSE(e-value:9.1e-29;bit-score:125.0)"; Scaffold002 rebuild exon 176879 177097 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.2"; Scaffold002 rebuild exon 177170 177209 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.2"; Scaffold002 rebuild exon 177395 177480 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.2"; Scaffold002 rebuild exon 177564 177611 . - . gene_id "RvY_03455"; transcript_id "RvY_03455.2"; Scaffold002 rebuild transcript 179147 182508 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; gene_name "moaA"; annotation "Molybdenum cofactor biosynthesis protein 1"; Pfam "[Mob_synth_C] Molybdenum Cofactor Synthesis C|[Radical_SAM] Radical SAM superfamily|[Fer4_12] 4Fe-4S single cluster domain|[Fer4_14] 4Fe-4S single cluster domain|[MoaC] MoaC family"; CDD "molybdenum cofactor biosynthesis protein A; Reviewed"; KO "K03639"; similar_genes "MOCS1_MOUSE(e-value:2.8e-123;bit-score:439.0)"; Scaffold002 rebuild exon 179147 179739 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 180279 180326 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 180497 180617 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 180735 180845 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 180920 181072 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 181474 181772 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 181851 182018 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 182101 182209 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild exon 182368 182508 . - . gene_id "RvY_03456"; transcript_id "RvY_03456.1"; Scaffold002 rebuild transcript 182623 182907 . + . gene_id "RvY_03457"; transcript_id "RvY_03457.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 182623 182907 . + . gene_id "RvY_03457"; transcript_id "RvY_03457.1"; Scaffold002 rebuild transcript 183050 184655 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; gene_name "GTPase_YlqF"; annotation "hypothetical protein."; Pfam "[FeoB_N] Ferrous iron transport protein B|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members."; similar_genes "MTG1_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 183050 183134 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild exon 183198 183457 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild exon 183593 183649 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild exon 183716 183812 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild exon 183869 184112 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild exon 184175 184281 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild exon 184498 184655 . + . gene_id "RvY_03458"; transcript_id "RvY_03458.1"; Scaffold002 rebuild transcript 184910 186678 . + . gene_id "RvY_03459"; transcript_id "RvY_03459.1"; gene_name "PRK06148"; annotation "hypothetical protein."; Pfam "[APH] Phosphotransferase enzyme family"; CDD "hypothetical protein; Provisional"; Scaffold002 rebuild exon 184910 185270 . + . gene_id "RvY_03459"; transcript_id "RvY_03459.1"; Scaffold002 rebuild exon 185571 185713 . + . gene_id "RvY_03459"; transcript_id "RvY_03459.1"; Scaffold002 rebuild exon 185849 186026 . + . gene_id "RvY_03459"; transcript_id "RvY_03459.1"; Scaffold002 rebuild exon 186182 186678 . + . gene_id "RvY_03459"; transcript_id "RvY_03459.1"; Scaffold002 rebuild transcript 188778 195011 . + . gene_id "RvY_03460"; transcript_id "RvY_03460.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 188778 189183 . + . gene_id "RvY_03460"; transcript_id "RvY_03460.1"; Scaffold002 rebuild exon 189273 189374 . + . gene_id "RvY_03460"; transcript_id "RvY_03460.1"; Scaffold002 rebuild exon 194006 194232 . + . gene_id "RvY_03460"; transcript_id "RvY_03460.1"; Scaffold002 rebuild exon 194538 195011 . + . gene_id "RvY_03460"; transcript_id "RvY_03460.1"; Scaffold002 rebuild transcript 196728 205467 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; annotation "Protein strawberry notch"; Pfam "[AAA_34] P-loop containing NTP hydrolase pore-1|[Helicase_C_4] Helicase_C-like"; similar_genes "SBNO_DROME(e-value:1.9e-56;bit-score:217.0)"; Scaffold002 rebuild exon 196728 196964 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 197257 197504 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 197866 198210 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 198298 198545 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 198622 198727 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 198984 199137 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 199218 199291 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 199364 199472 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 199573 199679 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 199958 200148 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 200212 200366 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 200446 200577 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 201070 201495 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 201721 201793 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 201924 202030 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 202109 202327 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 202567 202865 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 202936 203042 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 203315 203761 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 204126 204676 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 204970 205266 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild exon 205342 205467 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.1"; Scaffold002 rebuild transcript 196728 205467 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; annotation "Protein strawberry notch"; Pfam "[AAA_34] P-loop containing NTP hydrolase pore-1|[Helicase_C_4] Helicase_C-like"; similar_genes "SBNO_DROME(e-value:1.9e-56;bit-score:217.0)"; Scaffold002 rebuild exon 196728 196964 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 197257 197504 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 197866 198210 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 198298 198545 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 198622 198727 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 198984 199137 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 199218 199291 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 199364 199472 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 199573 199679 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 199958 200148 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 200212 200366 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 200446 200577 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 201070 201495 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 201721 201793 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 201924 202030 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 202109 202327 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 202567 202865 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 202936 203042 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 203315 203761 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 204126 204526 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 204970 205266 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild exon 205342 205467 . + . gene_id "RvY_03461"; transcript_id "RvY_03461.2"; Scaffold002 rebuild transcript 196735 196974 . - . gene_id "RvY_03462"; transcript_id "RvY_03462.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 196735 196974 . - . gene_id "RvY_03462"; transcript_id "RvY_03462.1"; Scaffold002 rebuild transcript 206635 209060 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold002 rebuild exon 206635 206693 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 206752 206950 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 207125 207249 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 207332 207528 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 207591 207875 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 207949 208143 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 208210 208358 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 208505 208646 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 208724 208923 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild exon 208992 209060 . + . gene_id "RvY_03463"; transcript_id "RvY_03463.1"; Scaffold002 rebuild transcript 211185 212283 . + . gene_id "RvY_03464"; transcript_id "RvY_03464.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 211185 211415 . + . gene_id "RvY_03464"; transcript_id "RvY_03464.1"; Scaffold002 rebuild exon 212155 212283 . + . gene_id "RvY_03464"; transcript_id "RvY_03464.1"; Scaffold002 rebuild transcript 213603 213932 . + . gene_id "RvY_03465"; transcript_id "RvY_03465.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 213603 213932 . + . gene_id "RvY_03465"; transcript_id "RvY_03465.1"; Scaffold002 rebuild transcript 214366 215846 . + . gene_id "RvY_03466"; transcript_id "RvY_03466.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 214366 214741 . + . gene_id "RvY_03466"; transcript_id "RvY_03466.1"; Scaffold002 rebuild exon 215755 215846 . + . gene_id "RvY_03466"; transcript_id "RvY_03466.1"; Scaffold002 rebuild transcript 218306 218587 . + . gene_id "RvY_03467"; transcript_id "RvY_03467.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 218306 218587 . + . gene_id "RvY_03467"; transcript_id "RvY_03467.1"; Scaffold002 rebuild transcript 218160 218492 . + . gene_id "RvY_03467"; transcript_id "RvY_03467.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 218160 218222 . + . gene_id "RvY_03467"; transcript_id "RvY_03467.2"; Scaffold002 rebuild exon 218331 218492 . + . gene_id "RvY_03467"; transcript_id "RvY_03467.2"; Scaffold002 rebuild transcript 218193 219184 . - . gene_id "RvY_03468"; transcript_id "RvY_03468.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 218193 218606 . - . gene_id "RvY_03468"; transcript_id "RvY_03468.1"; Scaffold002 rebuild exon 219080 219184 . - . gene_id "RvY_03468"; transcript_id "RvY_03468.1"; Scaffold002 rebuild transcript 219680 220129 . + . gene_id "RvY_03469"; transcript_id "RvY_03469.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 219680 220033 . + . gene_id "RvY_03469"; transcript_id "RvY_03469.1"; Scaffold002 rebuild exon 220097 220129 . + . gene_id "RvY_03469"; transcript_id "RvY_03469.1"; Scaffold002 rebuild transcript 219680 220239 . + . gene_id "RvY_03469"; transcript_id "RvY_03469.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 219680 219878 . + . gene_id "RvY_03469"; transcript_id "RvY_03469.2"; Scaffold002 rebuild exon 220097 220239 . + . gene_id "RvY_03469"; transcript_id "RvY_03469.2"; Scaffold002 rebuild transcript 220695 220970 . + . gene_id "RvY_03470"; transcript_id "RvY_03470.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 220695 220970 . + . gene_id "RvY_03470"; transcript_id "RvY_03470.1"; Scaffold002 rebuild transcript 220839 223287 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; gene_name "euk_LANCL"; annotation "LanC-like protein 1"; Pfam "[LANC_like] Lanthionine synthetase C-like protein"; CDD "eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs."; similar_genes "LANC1_HUMAN(e-value:9.6e-54;bit-score:208.0)"; Scaffold002 rebuild exon 220839 220918 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 220980 221052 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 221323 221499 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 221568 221750 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 221873 222013 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 222275 222422 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 222489 222705 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 223031 223148 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild exon 223204 223287 . - . gene_id "RvY_03471"; transcript_id "RvY_03471.1"; Scaffold002 rebuild transcript 223744 224265 . + . gene_id "RvY_03472"; transcript_id "RvY_03472.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 223744 224265 . + . gene_id "RvY_03472"; transcript_id "RvY_03472.1"; Scaffold002 rebuild transcript 224426 224665 . - . gene_id "RvY_03473"; transcript_id "RvY_03473.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 224426 224665 . - . gene_id "RvY_03473"; transcript_id "RvY_03473.1"; Scaffold002 rebuild transcript 226285 232711 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.1"; gene_name "(1)ADRA1B"; annotation "(1)adrenergic receptor, alpha 1B(2,3)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04136"; similar_genes "(1,3)ADA1A_CAVPO(e-value:6.4e-19;bit-score:92.0)(2)ADA2C_DANRE(e-value:6.7e-08;bit-score:55.0)"; Scaffold002 rebuild exon 226285 227100 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.1"; Scaffold002 rebuild exon 227665 227747 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.1"; Scaffold002 rebuild exon 230379 230968 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.1"; Scaffold002 rebuild exon 232171 232233 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.1"; Scaffold002 rebuild exon 232344 232711 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.1"; Scaffold002 rebuild transcript 226285 230964 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.2"; gene_name "(1)ADRA1B"; annotation "(1)adrenergic receptor, alpha 1B(2,3)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04136"; similar_genes "(1,3)ADA1A_CAVPO(e-value:6.4e-19;bit-score:92.0)(2)ADA2C_DANRE(e-value:6.7e-08;bit-score:55.0)"; Scaffold002 rebuild exon 226285 227100 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.2"; Scaffold002 rebuild exon 227665 227747 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.2"; Scaffold002 rebuild exon 230379 230964 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.2"; Scaffold002 rebuild transcript 230308 232711 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.3"; gene_name "(1)ADRA1B"; annotation "(1)adrenergic receptor, alpha 1B(2,3)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04136"; similar_genes "(1,3)ADA1A_CAVPO(e-value:6.4e-19;bit-score:92.0)(2)ADA2C_DANRE(e-value:6.7e-08;bit-score:55.0)"; Scaffold002 rebuild exon 230308 230968 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.3"; Scaffold002 rebuild exon 232171 232233 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.3"; Scaffold002 rebuild exon 232344 232711 . - . gene_id "RvY_03474"; transcript_id "RvY_03474.3"; Scaffold002 rebuild transcript 232314 232622 . + . gene_id "RvY_03475"; transcript_id "RvY_03475.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 232314 232622 . + . gene_id "RvY_03475"; transcript_id "RvY_03475.1"; Scaffold002 rebuild transcript 235697 236674 . - . gene_id "RvY_03476"; transcript_id "RvY_03476.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 235697 236250 . - . gene_id "RvY_03476"; transcript_id "RvY_03476.1"; Scaffold002 rebuild exon 236461 236674 . - . gene_id "RvY_03476"; transcript_id "RvY_03476.1"; Scaffold002 rebuild transcript 238314 239341 . + . gene_id "RvY_03477"; transcript_id "RvY_03477.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 238314 238418 . + . gene_id "RvY_03477"; transcript_id "RvY_03477.1"; Scaffold002 rebuild exon 238599 238874 . + . gene_id "RvY_03477"; transcript_id "RvY_03477.1"; Scaffold002 rebuild exon 239249 239341 . + . gene_id "RvY_03477"; transcript_id "RvY_03477.1"; Scaffold002 rebuild transcript 245185 248508 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.1"; gene_name "(1)PRK07764(2)CA"; annotation "hypothetical protein."; Pfam "[Cadherin_pro] Cadherin prodomain like|[Cadherin]"; CDD "(1)DNA polymerase III subunits gamma and tau; Validated(2)Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 245185 245517 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.1"; Scaffold002 rebuild exon 245939 246091 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.1"; Scaffold002 rebuild exon 246172 248508 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.1"; Scaffold002 rebuild transcript 242371 245481 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; gene_name "(1)PRK07764(2)CA"; annotation "hypothetical protein."; Pfam "[Cadherin_pro] Cadherin prodomain like|[Cadherin]"; CDD "(1)DNA polymerase III subunits gamma and tau; Validated(2)Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 242371 242509 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 242609 242929 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 243009 243284 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 243350 243711 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 243833 244102 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 244175 244312 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 244384 244710 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 244987 245160 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild exon 245218 245481 . - . gene_id "RvY_03478"; transcript_id "RvY_03478.2"; Scaffold002 rebuild transcript 252133 263745 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 252133 252228 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 252299 252481 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 252554 252688 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 252846 252999 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 253090 253283 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 253376 253494 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 253577 253713 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 253777 253919 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 253991 254153 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 254243 254464 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 254810 254937 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 255049 255185 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 255314 255471 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 255739 256042 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 256148 256338 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 256663 256982 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 257249 257400 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 259173 259365 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 259502 259611 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 259693 259937 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 260200 260374 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 260448 260631 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 261014 261032 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 261123 261280 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 261842 262042 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild exon 263590 263745 . - . gene_id "RvY_03479"; transcript_id "RvY_03479.1"; Scaffold002 rebuild transcript 257858 258094 . + . gene_id "RvY_03480"; transcript_id "RvY_03480.1"; annotation "hypothetical protein."; Pfam "[HTH_29] Winged helix-turn helix"; Scaffold002 rebuild exon 257858 258094 . + . gene_id "RvY_03480"; transcript_id "RvY_03480.1"; Scaffold002 rebuild transcript 258134 258886 . + . gene_id "RvY_03481"; transcript_id "RvY_03481.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc3_2] Transposase|[DDE_3] DDE superfamily endonuclease"; Scaffold002 rebuild exon 258134 258886 . + . gene_id "RvY_03481"; transcript_id "RvY_03481.1"; Scaffold002 rebuild transcript 262566 263228 . + . gene_id "RvY_03482"; transcript_id "RvY_03482.1"; gene_name "GINS2"; annotation "GINS complex subunit 2"; Pfam "[Sld5] GINS complex protein"; KO "K10733"; Scaffold002 rebuild exon 262566 263228 . + . gene_id "RvY_03482"; transcript_id "RvY_03482.1"; Scaffold002 rebuild transcript 266345 274425 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; gene_name "TRPM1"; annotation "transient receptor potential cation channel, subfamily M, member 1"; KO "K04976"; Scaffold002 rebuild exon 266345 266492 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 266604 266737 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 266806 266980 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 267152 267355 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 267426 267553 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 267822 267958 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 268034 268194 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 268545 268854 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 268922 269087 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 269319 269449 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 269506 269722 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 269804 269958 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 270041 270233 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 270320 270435 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 270509 270753 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 271035 271200 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 271287 271491 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 271586 271804 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 271862 272041 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild exon 274282 274425 . - . gene_id "RvY_03483"; transcript_id "RvY_03483.1"; Scaffold002 rebuild transcript 275097 277871 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; annotation "hypothetical protein."; Pfam "(2)[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit"; similar_genes "(2)KCMA1_MACMU(e-value:2.2e-23;bit-score:107.0)"; Scaffold002 rebuild exon 275097 275312 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 275373 275567 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 275628 275752 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 275998 276093 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 276175 276427 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 276503 276727 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 276850 276991 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 277056 277430 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 277501 277769 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild exon 277827 277871 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.1"; Scaffold002 rebuild transcript 277401 280452 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; annotation "hypothetical protein."; Pfam "(2)[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit"; similar_genes "(2)KCMA1_MACMU(e-value:2.2e-23;bit-score:107.0)"; Scaffold002 rebuild exon 277401 277769 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 277827 277991 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 278351 278419 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 278480 278669 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 278768 278878 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 278945 279036 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 279102 279272 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 279350 279501 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 279575 279686 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 279760 279862 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 279958 280019 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild exon 280135 280452 . - . gene_id "RvY_03484"; transcript_id "RvY_03484.2"; Scaffold002 rebuild transcript 281986 283139 . - . gene_id "RvY_03485"; transcript_id "RvY_03485.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 281986 282340 . - . gene_id "RvY_03485"; transcript_id "RvY_03485.1"; Scaffold002 rebuild exon 282568 282871 . - . gene_id "RvY_03485"; transcript_id "RvY_03485.1"; Scaffold002 rebuild exon 283082 283139 . - . gene_id "RvY_03485"; transcript_id "RvY_03485.1"; Scaffold002 rebuild transcript 283890 291123 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; annotation "hypothetical protein."; Pfam "[Nucleoporin_N] Nup133 N terminal like|[Nucleoporin_C] Non-repetitive/WGA-negative nucleoporin C-terminal"; KO "K14312"; Scaffold002 rebuild exon 283890 284019 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 284220 284314 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 284381 284541 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 284608 284724 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 284792 284912 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 284987 285100 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 285338 285920 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 286021 286301 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 286477 286797 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 287368 287523 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 287584 287826 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 288122 288470 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 288805 289081 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 289141 289366 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 289638 290017 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 290074 290367 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild exon 290625 291123 . - . gene_id "RvY_03486"; transcript_id "RvY_03486.1"; Scaffold002 rebuild transcript 291992 292357 . + . gene_id "RvY_03487"; transcript_id "RvY_03487.1"; gene_name "ATPeVF"; annotation "putative V-type proton ATPase subunit F"; Pfam "[ATP-synt_F] ATP synthase (F/14-kDa) subunit"; CDD "vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit"; EC "EC3.6.3.14"; KO "K02151"; similar_genes "VATF_HUMAN(e-value:8.9e-44;bit-score:174.0)"; Scaffold002 rebuild exon 291992 292357 . + . gene_id "RvY_03487"; transcript_id "RvY_03487.1"; Scaffold002 rebuild transcript 292659 293374 . - . gene_id "RvY_03488"; transcript_id "RvY_03488.1"; annotation "hypothetical protein."; Pfam "[Med10] Transcription factor subunit Med10 of Mediator complex"; KO "K15151"; similar_genes "MED10_AEDAE(e-value:5.6e-20;bit-score:95.0)"; Scaffold002 rebuild exon 292659 292778 . - . gene_id "RvY_03488"; transcript_id "RvY_03488.1"; Scaffold002 rebuild exon 292869 293055 . - . gene_id "RvY_03488"; transcript_id "RvY_03488.1"; Scaffold002 rebuild exon 293202 293374 . - . gene_id "RvY_03488"; transcript_id "RvY_03488.1"; Scaffold002 rebuild transcript 293998 295295 . - . gene_id "RvY_03489"; transcript_id "RvY_03489.1"; gene_name "MUG"; annotation "TDG/mug DNA glycosylase family protein [EC:3.2.2.-]"; Pfam "[UDG] Uracil DNA glycosylase superfamily"; CDD "mismatch-specific thymine-DNA glycosylate (mug). All proteins in this family for whcih functions are known are G-T or G-U mismatch glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Used 2pf model."; EC "EC3.2.2.-"; KO "K03649"; Scaffold002 rebuild exon 293998 294446 . - . gene_id "RvY_03489"; transcript_id "RvY_03489.1"; Scaffold002 rebuild exon 294508 294577 . - . gene_id "RvY_03489"; transcript_id "RvY_03489.1"; Scaffold002 rebuild exon 294861 294966 . - . gene_id "RvY_03489"; transcript_id "RvY_03489.1"; Scaffold002 rebuild exon 295090 295295 . - . gene_id "RvY_03489"; transcript_id "RvY_03489.1"; Scaffold002 rebuild transcript 296507 297049 . + . gene_id "RvY_03490"; transcript_id "RvY_03490.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 296507 297049 . + . gene_id "RvY_03490"; transcript_id "RvY_03490.1"; Scaffold002 rebuild transcript 297409 297773 . + . gene_id "RvY_03491"; transcript_id "RvY_03491.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 297409 297550 . + . gene_id "RvY_03491"; transcript_id "RvY_03491.1"; Scaffold002 rebuild exon 297658 297773 . + . gene_id "RvY_03491"; transcript_id "RvY_03491.1"; Scaffold002 rebuild transcript 298392 298721 . + . gene_id "RvY_03492"; transcript_id "RvY_03492.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 298392 298721 . + . gene_id "RvY_03492"; transcript_id "RvY_03492.1"; Scaffold002 rebuild transcript 300225 300539 . - . gene_id "RvY_03493"; transcript_id "RvY_03493.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 300225 300539 . - . gene_id "RvY_03493"; transcript_id "RvY_03493.1"; Scaffold002 rebuild transcript 300256 301911 . + . gene_id "RvY_03494"; transcript_id "RvY_03494.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 300256 300431 . + . gene_id "RvY_03494"; transcript_id "RvY_03494.1"; Scaffold002 rebuild exon 300613 300691 . + . gene_id "RvY_03494"; transcript_id "RvY_03494.1"; Scaffold002 rebuild exon 300762 300818 . + . gene_id "RvY_03494"; transcript_id "RvY_03494.1"; Scaffold002 rebuild exon 301144 301911 . + . gene_id "RvY_03494"; transcript_id "RvY_03494.1"; Scaffold002 rebuild transcript 303659 304489 . + . gene_id "RvY_03495"; transcript_id "RvY_03495.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 303659 303790 . + . gene_id "RvY_03495"; transcript_id "RvY_03495.1"; Scaffold002 rebuild exon 303864 304114 . + . gene_id "RvY_03495"; transcript_id "RvY_03495.1"; Scaffold002 rebuild exon 304177 304489 . + . gene_id "RvY_03495"; transcript_id "RvY_03495.1"; Scaffold002 rebuild transcript 304872 306867 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 304872 305009 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; Scaffold002 rebuild exon 305074 305204 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; Scaffold002 rebuild exon 305482 305891 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; Scaffold002 rebuild exon 305959 306179 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; Scaffold002 rebuild exon 306253 306515 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; Scaffold002 rebuild exon 306576 306867 . + . gene_id "RvY_03496"; transcript_id "RvY_03496.1"; Scaffold002 rebuild transcript 308073 309686 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 308073 308237 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.1"; Scaffold002 rebuild exon 308299 308549 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.1"; Scaffold002 rebuild exon 309386 309686 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.1"; Scaffold002 rebuild transcript 307822 308273 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 307822 307954 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.2"; Scaffold002 rebuild exon 308017 308273 . + . gene_id "RvY_03497"; transcript_id "RvY_03497.2"; Scaffold002 rebuild transcript 310332 312001 . - . gene_id "RvY_03498"; transcript_id "RvY_03498.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 310332 311144 . - . gene_id "RvY_03498"; transcript_id "RvY_03498.1"; Scaffold002 rebuild exon 311275 311558 . - . gene_id "RvY_03498"; transcript_id "RvY_03498.1"; Scaffold002 rebuild exon 311800 312001 . - . gene_id "RvY_03498"; transcript_id "RvY_03498.1"; Scaffold002 rebuild transcript 312672 312983 . - . gene_id "RvY_03499"; transcript_id "RvY_03499.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 312672 312983 . - . gene_id "RvY_03499"; transcript_id "RvY_03499.1"; Scaffold002 rebuild transcript 314038 314403 . - . gene_id "RvY_03500"; transcript_id "RvY_03500.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 314038 314110 . - . gene_id "RvY_03500"; transcript_id "RvY_03500.1"; Scaffold002 rebuild exon 314294 314403 . - . gene_id "RvY_03500"; transcript_id "RvY_03500.1"; Scaffold002 rebuild transcript 315131 315322 . + . gene_id "RvY_03501"; transcript_id "RvY_03501.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 315131 315322 . + . gene_id "RvY_03501"; transcript_id "RvY_03501.1"; Scaffold002 rebuild transcript 315441 315848 . - . gene_id "RvY_03502"; transcript_id "RvY_03502.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 315441 315848 . - . gene_id "RvY_03502"; transcript_id "RvY_03502.1"; Scaffold002 rebuild transcript 316048 317719 . - . gene_id "RvY_03503"; transcript_id "RvY_03503.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 316048 316604 . - . gene_id "RvY_03503"; transcript_id "RvY_03503.1"; Scaffold002 rebuild exon 316738 316993 . - . gene_id "RvY_03503"; transcript_id "RvY_03503.1"; Scaffold002 rebuild exon 317696 317719 . - . gene_id "RvY_03503"; transcript_id "RvY_03503.1"; Scaffold002 rebuild transcript 316265 316840 . + . gene_id "RvY_03504"; transcript_id "RvY_03504.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 316265 316840 . + . gene_id "RvY_03504"; transcript_id "RvY_03504.1"; Scaffold002 rebuild transcript 316339 316776 . + . gene_id "RvY_03504"; transcript_id "RvY_03504.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 316339 316776 . + . gene_id "RvY_03504"; transcript_id "RvY_03504.2"; Scaffold002 rebuild transcript 317973 319165 . + . gene_id "RvY_03505"; transcript_id "RvY_03505.1"; annotation "putative 14-3-3 protein epsilon"; Pfam "[14-3-3] 14-3-3 protein"; similar_genes "1433E_DROME(e-value:6.3e-34;bit-score:142.0)"; Scaffold002 rebuild exon 317973 318275 . + . gene_id "RvY_03505"; transcript_id "RvY_03505.1"; Scaffold002 rebuild exon 318333 318451 . + . gene_id "RvY_03505"; transcript_id "RvY_03505.1"; Scaffold002 rebuild exon 318534 318701 . + . gene_id "RvY_03505"; transcript_id "RvY_03505.1"; Scaffold002 rebuild exon 318771 318849 . + . gene_id "RvY_03505"; transcript_id "RvY_03505.1"; Scaffold002 rebuild exon 319010 319165 . + . gene_id "RvY_03505"; transcript_id "RvY_03505.1"; Scaffold002 rebuild transcript 320250 321639 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.1"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold002 rebuild exon 320250 320463 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.1"; Scaffold002 rebuild exon 320559 320739 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.1"; Scaffold002 rebuild exon 321030 321310 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.1"; Scaffold002 rebuild exon 321377 321639 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.1"; Scaffold002 rebuild transcript 320250 321639 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.2"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold002 rebuild exon 320250 320427 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.2"; Scaffold002 rebuild exon 320559 320739 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.2"; Scaffold002 rebuild exon 321030 321310 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.2"; Scaffold002 rebuild exon 321377 321639 . + . gene_id "RvY_03506"; transcript_id "RvY_03506.2"; Scaffold002 rebuild transcript 321896 323693 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold002 rebuild exon 321896 322196 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.1"; Scaffold002 rebuild exon 322493 323051 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.1"; Scaffold002 rebuild exon 323113 323404 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.1"; Scaffold002 rebuild exon 323498 323570 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.1"; Scaffold002 rebuild exon 323641 323693 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.1"; Scaffold002 rebuild transcript 321734 323185 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.2"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold002 rebuild exon 321734 321824 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.2"; Scaffold002 rebuild exon 321900 322196 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.2"; Scaffold002 rebuild exon 322493 323051 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.2"; Scaffold002 rebuild exon 323113 323185 . - . gene_id "RvY_03507"; transcript_id "RvY_03507.2"; Scaffold002 rebuild transcript 326064 328649 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; annotation "hypothetical protein."; Pfam "[ShK] ShK domain-like|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold002 rebuild exon 326064 326187 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 326295 326411 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 326490 326632 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 326717 326761 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 326823 326932 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 327033 327203 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 327293 327480 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 327846 328052 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild exon 328126 328649 . + . gene_id "RvY_03508"; transcript_id "RvY_03508.1"; Scaffold002 rebuild transcript 330364 330561 . - . gene_id "RvY_03509"; transcript_id "RvY_03509.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 330364 330561 . - . gene_id "RvY_03509"; transcript_id "RvY_03509.1"; Scaffold002 rebuild transcript 331703 332032 . + . gene_id "RvY_03510"; transcript_id "RvY_03510.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 331703 332032 . + . gene_id "RvY_03510"; transcript_id "RvY_03510.1"; Scaffold002 rebuild transcript 332219 337064 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; gene_name "(1)GLRA3"; annotation "(1)putative Glycine receptor subunit alpha-3(2)hypothetical protein."; Pfam "(1)[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "(1)Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(1)K05195"; similar_genes "(1)GLRA3_HUMAN(e-value:1.8e-27;bit-score:120.0)(2)GLRA3_HUMAN(e-value:6.1e-13;bit-score:72.0)"; Scaffold002 rebuild exon 332219 332283 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 334443 334522 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 334690 334763 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 334893 335043 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 335166 335241 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 335454 335536 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 335659 335799 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 335857 335960 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 336119 336156 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 336239 336326 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 336409 336654 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild exon 336849 337064 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.1"; Scaffold002 rebuild transcript 332219 335837 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; gene_name "(1)GLRA3"; annotation "(1)putative Glycine receptor subunit alpha-3(2)hypothetical protein."; Pfam "(1)[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "(1)Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(1)K05195"; similar_genes "(1)GLRA3_HUMAN(e-value:1.8e-27;bit-score:120.0)(2)GLRA3_HUMAN(e-value:6.1e-13;bit-score:72.0)"; Scaffold002 rebuild exon 332219 332283 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild exon 334443 334522 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild exon 334690 334763 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild exon 334893 335043 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild exon 335166 335241 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild exon 335454 335536 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild exon 335659 335837 . + . gene_id "RvY_03511"; transcript_id "RvY_03511.2"; Scaffold002 rebuild transcript 337348 339146 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 337348 337474 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild exon 337547 337656 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild exon 337719 337851 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild exon 337926 338148 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild exon 338235 338272 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild exon 338412 338633 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild exon 338692 339146 . - . gene_id "RvY_03512"; transcript_id "RvY_03512.1"; Scaffold002 rebuild transcript 341413 341778 . + . gene_id "RvY_03513"; transcript_id "RvY_03513.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 341413 341778 . + . gene_id "RvY_03513"; transcript_id "RvY_03513.1"; Scaffold002 rebuild transcript 343757 347939 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; gene_name "GLRA4"; annotation "putative Glycine receptor subunit alpha-4"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K05271"; similar_genes "GLRA4_HUMAN(e-value:4.6e-30;bit-score:129.0)"; Scaffold002 rebuild exon 343757 343845 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 345265 345344 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 345434 345507 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 345585 345614 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 345687 345807 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 345934 346009 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 346361 346443 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 346576 346716 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 346863 346966 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 347038 347075 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 347186 347292 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 347406 347656 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild exon 347718 347939 . + . gene_id "RvY_03514"; transcript_id "RvY_03514.1"; Scaffold002 rebuild transcript 344854 345000 . - . gene_id "RvY_03515"; transcript_id "RvY_03515.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 344854 345000 . - . gene_id "RvY_03515"; transcript_id "RvY_03515.1"; Scaffold002 rebuild transcript 348591 349973 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; gene_name "LIC"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; Scaffold002 rebuild exon 348591 348747 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild exon 348825 348898 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild exon 348972 349125 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild exon 349275 349350 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild exon 349428 349510 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild exon 349584 349721 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild exon 349795 349973 . + . gene_id "RvY_03516"; transcript_id "RvY_03516.1"; Scaffold002 rebuild transcript 350489 355704 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; annotation "putative Excitatory amino acid transporter 1"; Pfam "[SDF] Sodium:dicarboxylate symporter family"; similar_genes "EAA1_RAT(e-value:8.9e-27;bit-score:118.0)"; Scaffold002 rebuild exon 350489 350732 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 350810 350907 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 350974 351010 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 351372 351459 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 351537 351557 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 351631 351656 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 351744 351928 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 352033 352138 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 352214 352313 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 352397 352602 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 352668 353034 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild exon 355464 355704 . - . gene_id "RvY_03517"; transcript_id "RvY_03517.1"; Scaffold002 rebuild transcript 357810 358199 . + . gene_id "RvY_03518"; transcript_id "RvY_03518.1"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold002 rebuild exon 357810 358199 . + . gene_id "RvY_03518"; transcript_id "RvY_03518.1"; Scaffold002 rebuild transcript 358810 359127 . + . gene_id "RvY_03519"; transcript_id "RvY_03519.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 358810 358986 . + . gene_id "RvY_03519"; transcript_id "RvY_03519.1"; Scaffold002 rebuild exon 359092 359127 . + . gene_id "RvY_03519"; transcript_id "RvY_03519.1"; Scaffold002 rebuild transcript 359148 361216 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold002 rebuild exon 359148 359471 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.1"; Scaffold002 rebuild exon 359565 359879 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.1"; Scaffold002 rebuild exon 359951 360049 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.1"; Scaffold002 rebuild exon 360258 360420 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.1"; Scaffold002 rebuild exon 360759 361216 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.1"; Scaffold002 rebuild transcript 359148 361216 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold002 rebuild exon 359148 359270 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; Scaffold002 rebuild exon 359349 359471 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; Scaffold002 rebuild exon 359565 359879 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; Scaffold002 rebuild exon 359951 360049 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; Scaffold002 rebuild exon 360258 360420 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; Scaffold002 rebuild exon 360759 361216 . + . gene_id "RvY_03520"; transcript_id "RvY_03520.2"; Scaffold002 rebuild transcript 361915 362583 . + . gene_id "RvY_03521"; transcript_id "RvY_03521.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 361915 361987 . + . gene_id "RvY_03521"; transcript_id "RvY_03521.1"; Scaffold002 rebuild exon 362057 362115 . + . gene_id "RvY_03521"; transcript_id "RvY_03521.1"; Scaffold002 rebuild exon 362193 362255 . + . gene_id "RvY_03521"; transcript_id "RvY_03521.1"; Scaffold002 rebuild exon 362350 362583 . + . gene_id "RvY_03521"; transcript_id "RvY_03521.1"; Scaffold002 rebuild transcript 363132 364304 . + . gene_id "RvY_03522"; transcript_id "RvY_03522.1"; gene_name "PRK05648"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Reviewed"; similar_genes "FH12_ORYSJ(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 363132 364304 . + . gene_id "RvY_03522"; transcript_id "RvY_03522.1"; Scaffold002 rebuild transcript 364584 370262 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; gene_name "GRGLCN"; annotation "putative Glutamate-gated chloride channel"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K05273"; similar_genes "GLUCL_DROME(e-value:6.2e-49;bit-score:192.0)"; Scaffold002 rebuild exon 364584 364615 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 364686 364730 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 364799 365330 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 365389 365779 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 365852 365918 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 365979 366129 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 366239 366318 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 366487 366621 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 366710 366792 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 366874 366922 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 367293 367464 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 367671 367738 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 369749 369858 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild exon 370081 370262 . - . gene_id "RvY_03523"; transcript_id "RvY_03523.1"; Scaffold002 rebuild transcript 370407 371231 . + . gene_id "RvY_03524"; transcript_id "RvY_03524.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 370407 370461 . + . gene_id "RvY_03524"; transcript_id "RvY_03524.1"; Scaffold002 rebuild exon 371053 371231 . + . gene_id "RvY_03524"; transcript_id "RvY_03524.1"; Scaffold002 rebuild transcript 377696 377869 . - . gene_id "RvY_03525"; transcript_id "RvY_03525.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 377696 377869 . - . gene_id "RvY_03525"; transcript_id "RvY_03525.1"; Scaffold002 rebuild transcript 378585 386895 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 378585 378893 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 379159 379490 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 379564 379801 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 379949 380573 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 380640 380946 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 381238 381868 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 381947 382134 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 382448 382812 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 383235 383775 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild exon 386820 386895 . - . gene_id "RvY_03526"; transcript_id "RvY_03526.1"; Scaffold002 rebuild transcript 388820 394106 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; gene_name "TLDc"; annotation "hypothetical protein."; Pfam "[TLD]"; CDD "domain in TBC and LysM domain containing proteins."; similar_genes "OXR1_RAT(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 388820 388955 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 389218 389291 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 389707 390095 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 390397 390749 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 391513 391851 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 392203 392326 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 392412 392727 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 392903 393164 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild exon 393631 394106 . - . gene_id "RvY_03527"; transcript_id "RvY_03527.1"; Scaffold002 rebuild transcript 398164 399934 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14004"; similar_genes "SEC13_MAGGR(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 398164 398166 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 398247 398297 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 398373 398503 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 398561 398709 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 398776 398868 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 398927 398970 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 399234 399355 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 399452 399719 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild exon 399788 399934 . + . gene_id "RvY_03528"; transcript_id "RvY_03528.1"; Scaffold002 rebuild transcript 400692 405980 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[TUDOR] Tudor domain"; similar_genes "K2C1_MOUSE(e-value:1.7e-08;bit-score:57.0)"; Scaffold002 rebuild exon 400692 400760 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 400838 400926 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 401368 401482 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 401572 401681 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 401761 401837 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 401949 402098 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 402200 402361 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 402467 402679 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 402788 402965 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 403105 403314 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 403475 403955 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 404029 404340 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 404677 404989 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 405059 405169 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 405266 405433 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild exon 405757 405980 . + . gene_id "RvY_03529"; transcript_id "RvY_03529.1"; Scaffold002 rebuild transcript 406717 407216 . - . gene_id "RvY_03530"; transcript_id "RvY_03530.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 406717 407023 . - . gene_id "RvY_03530"; transcript_id "RvY_03530.1"; Scaffold002 rebuild exon 407083 407216 . - . gene_id "RvY_03530"; transcript_id "RvY_03530.1"; Scaffold002 rebuild transcript 407664 408504 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.1"; annotation "hypothetical protein."; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; Scaffold002 rebuild exon 407664 407713 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.1"; Scaffold002 rebuild exon 407822 407939 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.1"; Scaffold002 rebuild exon 408008 408068 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.1"; Scaffold002 rebuild exon 408353 408504 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.1"; Scaffold002 rebuild transcript 407555 408030 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.2"; annotation "hypothetical protein."; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; Scaffold002 rebuild exon 407555 407713 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.2"; Scaffold002 rebuild exon 407822 407939 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.2"; Scaffold002 rebuild exon 408008 408030 . + . gene_id "RvY_03531"; transcript_id "RvY_03531.2"; Scaffold002 rebuild transcript 409247 410323 . + . gene_id "RvY_03532"; transcript_id "RvY_03532.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 409247 409306 . + . gene_id "RvY_03532"; transcript_id "RvY_03532.1"; Scaffold002 rebuild exon 410132 410323 . + . gene_id "RvY_03532"; transcript_id "RvY_03532.1"; Scaffold002 rebuild transcript 410993 412891 . + . gene_id "RvY_03533"; transcript_id "RvY_03533.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; Scaffold002 rebuild exon 410993 411269 . + . gene_id "RvY_03533"; transcript_id "RvY_03533.1"; Scaffold002 rebuild exon 411341 411694 . + . gene_id "RvY_03533"; transcript_id "RvY_03533.1"; Scaffold002 rebuild exon 411751 412125 . + . gene_id "RvY_03533"; transcript_id "RvY_03533.1"; Scaffold002 rebuild exon 412341 412891 . + . gene_id "RvY_03533"; transcript_id "RvY_03533.1"; Scaffold002 rebuild transcript 413485 415201 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.1"; gene_name "(1)NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1)RORB_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 413485 413571 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.1"; Scaffold002 rebuild exon 413652 413819 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.1"; Scaffold002 rebuild exon 413887 414380 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.1"; Scaffold002 rebuild exon 414823 414970 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.1"; Scaffold002 rebuild exon 415076 415201 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.1"; Scaffold002 rebuild transcript 413485 414929 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.2"; gene_name "(1)NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1)RORB_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 413485 413571 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.2"; Scaffold002 rebuild exon 413652 413819 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.2"; Scaffold002 rebuild exon 413887 414376 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.2"; Scaffold002 rebuild exon 414823 414929 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.2"; Scaffold002 rebuild transcript 413485 414841 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.3"; gene_name "(1)NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1)RORB_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 413485 413571 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.3"; Scaffold002 rebuild exon 413652 413819 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.3"; Scaffold002 rebuild exon 413887 414380 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.3"; Scaffold002 rebuild exon 414823 414841 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.3"; Scaffold002 rebuild transcript 413485 414348 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.4"; gene_name "(1)NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1)RORB_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 413485 413571 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.4"; Scaffold002 rebuild exon 413652 413819 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.4"; Scaffold002 rebuild exon 413887 414348 . - . gene_id "RvY_03534"; transcript_id "RvY_03534.4"; Scaffold002 rebuild transcript 416316 418426 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; annotation "hypothetical protein."; Pfam "[CDC50] LEM3 (ligand-effect modulator 3) family / CDC50 family"; similar_genes "CC50A_RAT(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 416316 416331 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 416618 416754 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 416822 417167 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 417226 417339 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 417417 417509 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 417587 417715 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 417833 417998 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild exon 418378 418426 . + . gene_id "RvY_03535"; transcript_id "RvY_03535.1"; Scaffold002 rebuild transcript 419824 426796 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 419824 420537 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.1"; Scaffold002 rebuild exon 420651 421716 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.1"; Scaffold002 rebuild exon 426480 426796 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.1"; Scaffold002 rebuild transcript 420516 426796 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 420516 420542 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.2"; Scaffold002 rebuild exon 420651 421716 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.2"; Scaffold002 rebuild exon 426480 426796 . - . gene_id "RvY_03536"; transcript_id "RvY_03536.2"; Scaffold002 rebuild transcript 423736 424020 . + . gene_id "RvY_03537"; transcript_id "RvY_03537.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 423736 424020 . + . gene_id "RvY_03537"; transcript_id "RvY_03537.1"; Scaffold002 rebuild transcript 428981 429377 . - . gene_id "RvY_03538"; transcript_id "RvY_03538.1"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; Scaffold002 rebuild exon 428981 429262 . - . gene_id "RvY_03538"; transcript_id "RvY_03538.1"; Scaffold002 rebuild exon 429339 429377 . - . gene_id "RvY_03538"; transcript_id "RvY_03538.1"; Scaffold002 rebuild transcript 430149 430328 . - . gene_id "RvY_03539"; transcript_id "RvY_03539.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 430149 430328 . - . gene_id "RvY_03539"; transcript_id "RvY_03539.1"; Scaffold002 rebuild transcript 430559 431449 . + . gene_id "RvY_03540"; transcript_id "RvY_03540.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 430559 430637 . + . gene_id "RvY_03540"; transcript_id "RvY_03540.1"; Scaffold002 rebuild exon 430930 431046 . + . gene_id "RvY_03540"; transcript_id "RvY_03540.1"; Scaffold002 rebuild exon 431325 431449 . + . gene_id "RvY_03540"; transcript_id "RvY_03540.1"; Scaffold002 rebuild transcript 433308 433745 . - . gene_id "RvY_03541"; transcript_id "RvY_03541.1"; gene_name "PAX"; annotation "hypothetical protein."; Pfam "[PAX] 'Paired box' domain"; CDD "Paired Box domain."; similar_genes "PAX5_HUMAN(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 433308 433745 . - . gene_id "RvY_03541"; transcript_id "RvY_03541.1"; Scaffold002 rebuild transcript 433858 435607 . - . gene_id "RvY_03542"; transcript_id "RvY_03542.1"; gene_name "PAX"; annotation "putative Paired box pox-neuro protein"; Pfam "[PAX] 'Paired box' domain"; CDD "Paired Box domain."; similar_genes "POXN_DROME(e-value:2.1e-30;bit-score:130.0)"; Scaffold002 rebuild exon 433858 434216 . - . gene_id "RvY_03542"; transcript_id "RvY_03542.1"; Scaffold002 rebuild exon 435355 435607 . - . gene_id "RvY_03542"; transcript_id "RvY_03542.1"; Scaffold002 rebuild transcript 436634 438765 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; gene_name "PRK06701"; annotation "putative Glucose and ribitol dehydrogenase homolog 1"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.1.1.-"; similar_genes "GRDH1_ARATH(e-value:8.5e-38;bit-score:155.0)"; Scaffold002 rebuild exon 436634 436728 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 436790 436853 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 437055 437208 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 437305 437423 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 437488 437600 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 437685 437847 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 437937 437989 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 438293 438452 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild exon 438514 438765 . - . gene_id "RvY_03543"; transcript_id "RvY_03543.1"; Scaffold002 rebuild transcript 440340 442343 . + . gene_id "RvY_03544"; transcript_id "RvY_03544.1"; gene_name "MhpC"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family"; CDD "Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]"; EC "EC3.-.-.-"; KO "K13706"; similar_genes "ABHEB_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 440340 440777 . + . gene_id "RvY_03544"; transcript_id "RvY_03544.1"; Scaffold002 rebuild exon 440849 441241 . + . gene_id "RvY_03544"; transcript_id "RvY_03544.1"; Scaffold002 rebuild exon 441306 442343 . + . gene_id "RvY_03544"; transcript_id "RvY_03544.1"; Scaffold002 rebuild transcript 443070 443378 . + . gene_id "RvY_03545"; transcript_id "RvY_03545.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 443070 443378 . + . gene_id "RvY_03545"; transcript_id "RvY_03545.1"; Scaffold002 rebuild transcript 443394 444673 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 443394 443597 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.1"; Scaffold002 rebuild exon 443923 444076 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.1"; Scaffold002 rebuild exon 444136 444379 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.1"; Scaffold002 rebuild exon 444448 444673 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.1"; Scaffold002 rebuild transcript 444425 445595 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 444425 444746 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.2"; Scaffold002 rebuild exon 444855 444904 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.2"; Scaffold002 rebuild exon 445186 445266 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.2"; Scaffold002 rebuild exon 445338 445595 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.2"; Scaffold002 rebuild transcript 444425 445568 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 444425 444746 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.3"; Scaffold002 rebuild exon 444855 444904 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.3"; Scaffold002 rebuild exon 445186 445266 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.3"; Scaffold002 rebuild exon 445338 445568 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.3"; Scaffold002 rebuild transcript 444132 444673 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 444132 444379 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.4"; Scaffold002 rebuild exon 444448 444673 . - . gene_id "RvY_03546"; transcript_id "RvY_03546.4"; Scaffold002 rebuild transcript 447042 449185 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; gene_name "(1)sss"; annotation "hypothetical protein."; CDD "(1)SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; similar_genes "(1)DUR31_SCHPO(e-value:4.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 447042 447334 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; Scaffold002 rebuild exon 447428 447532 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; Scaffold002 rebuild exon 447601 447893 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; Scaffold002 rebuild exon 448533 448601 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; Scaffold002 rebuild exon 448753 448829 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; Scaffold002 rebuild exon 449153 449185 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.1"; Scaffold002 rebuild transcript 447436 449333 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.2"; gene_name "(1)sss"; annotation "hypothetical protein."; CDD "(1)SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; similar_genes "(1)DUR31_SCHPO(e-value:4.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 447436 447532 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.2"; Scaffold002 rebuild exon 447601 447893 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.2"; Scaffold002 rebuild exon 448533 448601 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.2"; Scaffold002 rebuild exon 448753 448829 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.2"; Scaffold002 rebuild exon 449153 449333 . - . gene_id "RvY_03547"; transcript_id "RvY_03547.2"; Scaffold002 rebuild transcript 451798 456548 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; gene_name "(1,2)CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)GCY_STRPU(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 451798 451830 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 451905 451943 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 452086 452118 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 452192 452338 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 452437 452640 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 452744 452888 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 453907 453997 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 454244 454526 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 454591 454779 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 454925 455246 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 455314 455635 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 455701 456111 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 456177 456226 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 456299 456396 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild exon 456465 456548 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.1"; Scaffold002 rebuild transcript 451798 456548 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; gene_name "(1,2)CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)GCY_STRPU(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 451798 451830 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 451905 451943 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 452086 452118 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 452192 452338 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 452440 452640 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 452744 452888 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 453907 453997 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 454244 454526 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 454591 454779 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 454925 455246 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 455314 455635 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 455701 456111 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 456177 456226 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 456299 456396 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild exon 456465 456548 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.2"; Scaffold002 rebuild transcript 450878 454299 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; gene_name "(1,2)CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)GCY_STRPU(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 450878 451286 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 451378 451704 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 451787 451830 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 451905 451943 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 452086 452118 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 452192 452338 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 452437 452640 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 452744 452888 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 453907 453997 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild exon 454242 454299 . + . gene_id "RvY_03548"; transcript_id "RvY_03548.3"; Scaffold002 rebuild transcript 458210 459963 . - . gene_id "RvY_03549"; transcript_id "RvY_03549.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 458210 458337 . - . gene_id "RvY_03549"; transcript_id "RvY_03549.1"; Scaffold002 rebuild exon 459048 459963 . - . gene_id "RvY_03549"; transcript_id "RvY_03549.1"; Scaffold002 rebuild transcript 460400 461689 . + . gene_id "RvY_03550"; transcript_id "RvY_03550.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold002 rebuild exon 460400 460891 . + . gene_id "RvY_03550"; transcript_id "RvY_03550.1"; Scaffold002 rebuild exon 461127 461385 . + . gene_id "RvY_03550"; transcript_id "RvY_03550.1"; Scaffold002 rebuild exon 461670 461689 . + . gene_id "RvY_03550"; transcript_id "RvY_03550.1"; Scaffold002 rebuild transcript 464192 465311 . + . gene_id "RvY_03551"; transcript_id "RvY_03551.1"; gene_name "NR_DBD_DHR4_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; Scaffold002 rebuild exon 464192 464314 . + . gene_id "RvY_03551"; transcript_id "RvY_03551.1"; Scaffold002 rebuild exon 464405 464546 . + . gene_id "RvY_03551"; transcript_id "RvY_03551.1"; Scaffold002 rebuild exon 464725 465311 . + . gene_id "RvY_03551"; transcript_id "RvY_03551.1"; Scaffold002 rebuild transcript 465610 470925 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; gene_name "CTNNA"; annotation "Catenin alpha-2"; Pfam "[Vinculin] Vinculin family"; KO "K05691"; similar_genes "CTNA2_DANRE(e-value:4.6e-115;bit-score:411.0)"; Scaffold002 rebuild exon 465610 465896 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 466254 466623 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 466900 467273 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 467633 467936 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 468082 468408 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 468631 468834 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 469352 469525 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 469591 469800 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 470046 470399 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild exon 470812 470925 . - . gene_id "RvY_03552"; transcript_id "RvY_03552.1"; Scaffold002 rebuild transcript 474334 475231 . - . gene_id "RvY_03553"; transcript_id "RvY_03553.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 474334 474545 . - . gene_id "RvY_03553"; transcript_id "RvY_03553.1"; Scaffold002 rebuild exon 474871 475231 . - . gene_id "RvY_03553"; transcript_id "RvY_03553.1"; Scaffold002 rebuild transcript 476466 476822 . - . gene_id "RvY_03554"; transcript_id "RvY_03554.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold002 rebuild exon 476466 476822 . - . gene_id "RvY_03554"; transcript_id "RvY_03554.1"; Scaffold002 rebuild transcript 477219 477485 . - . gene_id "RvY_03555"; transcript_id "RvY_03555.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 477219 477485 . - . gene_id "RvY_03555"; transcript_id "RvY_03555.1"; Scaffold002 rebuild transcript 479087 480310 . + . gene_id "RvY_03556"; transcript_id "RvY_03556.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 479087 479144 . + . gene_id "RvY_03556"; transcript_id "RvY_03556.1"; Scaffold002 rebuild exon 480135 480310 . + . gene_id "RvY_03556"; transcript_id "RvY_03556.1"; Scaffold002 rebuild transcript 481015 483094 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; gene_name "K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; KO "K01025"; Scaffold002 rebuild exon 481015 481151 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; Scaffold002 rebuild exon 481239 481422 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; Scaffold002 rebuild exon 481487 481708 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; Scaffold002 rebuild exon 482037 482272 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; Scaffold002 rebuild exon 482383 482495 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; Scaffold002 rebuild exon 482934 483094 . - . gene_id "RvY_03557"; transcript_id "RvY_03557.1"; Scaffold002 rebuild transcript 483695 484634 . - . gene_id "RvY_03558"; transcript_id "RvY_03558.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 483695 484113 . - . gene_id "RvY_03558"; transcript_id "RvY_03558.1"; Scaffold002 rebuild exon 484201 484282 . - . gene_id "RvY_03558"; transcript_id "RvY_03558.1"; Scaffold002 rebuild exon 484368 484634 . - . gene_id "RvY_03558"; transcript_id "RvY_03558.1"; Scaffold002 rebuild transcript 485455 486000 . + . gene_id "RvY_03559"; transcript_id "RvY_03559.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 485455 485566 . + . gene_id "RvY_03559"; transcript_id "RvY_03559.1"; Scaffold002 rebuild exon 485666 486000 . + . gene_id "RvY_03559"; transcript_id "RvY_03559.1"; Scaffold002 rebuild transcript 486159 488077 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; gene_name "UCHL5"; annotation "putative Ubiquitin carboxyl-terminal hydrolase isozyme L5"; Pfam "[Peptidase_C12] Ubiquitin carboxyl-terminal hydrolase, family 1"; EC "EC3.4.19.12"; KO "K05610"; similar_genes "UCHL5_BOVIN(e-value:1.9e-37;bit-score:153.0)"; Scaffold002 rebuild exon 486159 486221 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild exon 486312 486410 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild exon 486511 486697 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild exon 486756 487029 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild exon 487312 487423 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild exon 487746 487848 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild exon 487938 488077 . - . gene_id "RvY_03560"; transcript_id "RvY_03560.1"; Scaffold002 rebuild transcript 492053 492359 . + . gene_id "RvY_03561"; transcript_id "RvY_03561.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold002 rebuild exon 492053 492238 . + . gene_id "RvY_03561"; transcript_id "RvY_03561.1"; Scaffold002 rebuild exon 492303 492359 . + . gene_id "RvY_03561"; transcript_id "RvY_03561.1"; Scaffold002 rebuild transcript 493063 496293 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 493063 493462 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.1"; Scaffold002 rebuild exon 493636 493701 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.1"; Scaffold002 rebuild exon 493754 494137 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.1"; Scaffold002 rebuild exon 494470 495995 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.1"; Scaffold002 rebuild exon 496264 496293 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.1"; Scaffold002 rebuild transcript 493063 496293 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 493063 493438 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.2"; Scaffold002 rebuild exon 493636 493701 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.2"; Scaffold002 rebuild exon 493754 494137 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.2"; Scaffold002 rebuild exon 494470 495995 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.2"; Scaffold002 rebuild exon 496264 496293 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.2"; Scaffold002 rebuild transcript 493063 496293 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 493063 493438 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.3"; Scaffold002 rebuild exon 493636 493701 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.3"; Scaffold002 rebuild exon 493763 494137 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.3"; Scaffold002 rebuild exon 494470 495995 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.3"; Scaffold002 rebuild exon 496264 496293 . + . gene_id "RvY_03562"; transcript_id "RvY_03562.3"; Scaffold002 rebuild transcript 500484 502356 . + . gene_id "RvY_03563"; transcript_id "RvY_03563.1"; gene_name "Arf_Arl"; annotation "hypothetical protein."; Pfam "[G-alpha] G-protein alpha subunit|[Arf] ADP-ribosylation factor family"; CDD "Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions."; Scaffold002 rebuild exon 500484 501239 . + . gene_id "RvY_03563"; transcript_id "RvY_03563.1"; Scaffold002 rebuild exon 501598 502356 . + . gene_id "RvY_03563"; transcript_id "RvY_03563.1"; Scaffold002 rebuild transcript 503591 506224 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; gene_name "(1)DYNc"; annotation "(1)putative Dynamin-1-like protein(2)putative Dynamin-A"; Pfam "[Dynamin_M] Dynamin central region|[Dynamin_N] Dynamin family|(1)[GED] Dynamin GTPase effector domain"; CDD "(1)Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event."; EC "(1)EC3.6.5.5"; similar_genes "(1)DNM1L_DANRE(e-value:3.4e-26;bit-score:116.0)(2)DYNA_DICDI(e-value:1.3e-27;bit-score:121.0)"; Scaffold002 rebuild exon 503591 503705 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; Scaffold002 rebuild exon 503922 504070 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; Scaffold002 rebuild exon 504594 504947 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; Scaffold002 rebuild exon 505031 505183 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; Scaffold002 rebuild exon 505252 505821 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; Scaffold002 rebuild exon 506054 506224 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.1"; Scaffold002 rebuild transcript 503591 505222 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.2"; gene_name "(1)DYNc"; annotation "(1)putative Dynamin-1-like protein(2)putative Dynamin-A"; Pfam "[Dynamin_M] Dynamin central region|[Dynamin_N] Dynamin family|(1)[GED] Dynamin GTPase effector domain"; CDD "(1)Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event."; EC "(1)EC3.6.5.5"; similar_genes "(1)DNM1L_DANRE(e-value:3.4e-26;bit-score:116.0)(2)DYNA_DICDI(e-value:1.3e-27;bit-score:121.0)"; Scaffold002 rebuild exon 503591 503705 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.2"; Scaffold002 rebuild exon 503922 504070 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.2"; Scaffold002 rebuild exon 504145 504249 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.2"; Scaffold002 rebuild exon 504594 504947 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.2"; Scaffold002 rebuild exon 505031 505222 . + . gene_id "RvY_03564"; transcript_id "RvY_03564.2"; Scaffold002 rebuild transcript 508878 514555 . + . gene_id "RvY_03565"; transcript_id "RvY_03565.1"; gene_name "DRDN"; annotation "dopamine receptor, invertebrate"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K04148"; similar_genes "5HT6R_HUMAN(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 508878 509163 . + . gene_id "RvY_03565"; transcript_id "RvY_03565.1"; Scaffold002 rebuild exon 510002 510105 . + . gene_id "RvY_03565"; transcript_id "RvY_03565.1"; Scaffold002 rebuild exon 512491 513199 . + . gene_id "RvY_03565"; transcript_id "RvY_03565.1"; Scaffold002 rebuild exon 514275 514555 . + . gene_id "RvY_03565"; transcript_id "RvY_03565.1"; Scaffold002 rebuild transcript 515147 515557 . - . gene_id "RvY_03566"; transcript_id "RvY_03566.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 515147 515557 . - . gene_id "RvY_03566"; transcript_id "RvY_03566.1"; Scaffold002 rebuild transcript 517143 518931 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold002 rebuild exon 517143 517330 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.1"; Scaffold002 rebuild exon 517454 517580 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.1"; Scaffold002 rebuild exon 517827 518279 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.1"; Scaffold002 rebuild exon 518581 518931 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.1"; Scaffold002 rebuild transcript 517713 518931 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.2"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold002 rebuild exon 517713 518279 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.2"; Scaffold002 rebuild exon 518581 518931 . - . gene_id "RvY_03567"; transcript_id "RvY_03567.2"; Scaffold002 rebuild transcript 520258 521872 . + . gene_id "RvY_03568"; transcript_id "RvY_03568.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 520258 520451 . + . gene_id "RvY_03568"; transcript_id "RvY_03568.1"; Scaffold002 rebuild exon 520513 520843 . + . gene_id "RvY_03568"; transcript_id "RvY_03568.1"; Scaffold002 rebuild exon 520994 521215 . + . gene_id "RvY_03568"; transcript_id "RvY_03568.1"; Scaffold002 rebuild exon 521288 521872 . + . gene_id "RvY_03568"; transcript_id "RvY_03568.1"; Scaffold002 rebuild transcript 524618 536826 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; gene_name "COG5540"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; similar_genes "RNF44_DANRE(e-value:4.8e-17;bit-score:86.0)"; Scaffold002 rebuild exon 524618 524686 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 524947 525107 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 525174 525352 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 525633 526171 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 526457 526614 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 526846 527179 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 531238 531428 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild exon 536370 536826 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.1"; Scaffold002 rebuild transcript 524618 533123 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; gene_name "COG5540"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; similar_genes "RNF44_DANRE(e-value:4.8e-17;bit-score:86.0)"; Scaffold002 rebuild exon 524618 524686 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 524947 525107 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 525174 525352 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 525633 526171 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 526457 526614 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 526846 527179 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 531238 531428 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild exon 533105 533123 . - . gene_id "RvY_03569"; transcript_id "RvY_03569.2"; Scaffold002 rebuild transcript 538019 538381 . + . gene_id "RvY_03570"; transcript_id "RvY_03570.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 538019 538381 . + . gene_id "RvY_03570"; transcript_id "RvY_03570.1"; Scaffold002 rebuild transcript 538397 538695 . + . gene_id "RvY_03571"; transcript_id "RvY_03571.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 538397 538507 . + . gene_id "RvY_03571"; transcript_id "RvY_03571.1"; Scaffold002 rebuild exon 538579 538695 . + . gene_id "RvY_03571"; transcript_id "RvY_03571.1"; Scaffold002 rebuild transcript 540630 542045 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 540630 540780 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.1"; Scaffold002 rebuild exon 541284 541313 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.1"; Scaffold002 rebuild exon 541511 541591 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.1"; Scaffold002 rebuild exon 541690 542045 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.1"; Scaffold002 rebuild transcript 541348 542045 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 541348 541387 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.2"; Scaffold002 rebuild exon 541511 541591 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.2"; Scaffold002 rebuild exon 541690 542045 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.2"; Scaffold002 rebuild transcript 540630 541876 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 540630 540780 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.3"; Scaffold002 rebuild exon 541284 541313 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.3"; Scaffold002 rebuild exon 541511 541591 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.3"; Scaffold002 rebuild exon 541690 541777 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.3"; Scaffold002 rebuild exon 541870 541876 . + . gene_id "RvY_03572"; transcript_id "RvY_03572.3"; Scaffold002 rebuild transcript 542729 542905 . + . gene_id "RvY_03573"; transcript_id "RvY_03573.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 542729 542905 . + . gene_id "RvY_03573"; transcript_id "RvY_03573.1"; Scaffold002 rebuild transcript 543399 549519 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; annotation "putative Calcium-activated potassium channel slowpoke"; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit"; similar_genes "SLO_DROME(e-value:1.6e-28;bit-score:124.0)"; Scaffold002 rebuild exon 543399 544158 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 544399 544727 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 544793 544884 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 544942 545055 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 545303 545561 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 545637 545801 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 546163 546496 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 546667 546808 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 546880 547013 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 547264 547535 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 547614 547818 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 548051 548086 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 548152 548229 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 548297 548476 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 548692 548736 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 549042 549142 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild exon 549223 549519 . + . gene_id "RvY_03574"; transcript_id "RvY_03574.1"; Scaffold002 rebuild transcript 550748 551314 . + . gene_id "RvY_03575"; transcript_id "RvY_03575.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 550748 550930 . + . gene_id "RvY_03575"; transcript_id "RvY_03575.1"; Scaffold002 rebuild exon 551123 551314 . + . gene_id "RvY_03575"; transcript_id "RvY_03575.1"; Scaffold002 rebuild transcript 552507 553970 . - . gene_id "RvY_03576"; transcript_id "RvY_03576.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 552507 552691 . - . gene_id "RvY_03576"; transcript_id "RvY_03576.1"; Scaffold002 rebuild exon 553709 553970 . - . gene_id "RvY_03576"; transcript_id "RvY_03576.1"; Scaffold002 rebuild transcript 552157 552679 . - . gene_id "RvY_03576"; transcript_id "RvY_03576.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 552157 552217 . - . gene_id "RvY_03576"; transcript_id "RvY_03576.2"; Scaffold002 rebuild exon 552468 552679 . - . gene_id "RvY_03576"; transcript_id "RvY_03576.2"; Scaffold002 rebuild transcript 557748 558576 . - . gene_id "RvY_03577"; transcript_id "RvY_03577.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 557748 558145 . - . gene_id "RvY_03577"; transcript_id "RvY_03577.1"; Scaffold002 rebuild exon 558189 558576 . - . gene_id "RvY_03577"; transcript_id "RvY_03577.1"; Scaffold002 rebuild transcript 559297 561540 . + . gene_id "RvY_03578"; transcript_id "RvY_03578.1"; annotation "hypothetical protein."; Pfam "[DUF2215] Uncharacterized conserved protein (DUF2215)"; Scaffold002 rebuild exon 559297 559784 . + . gene_id "RvY_03578"; transcript_id "RvY_03578.1"; Scaffold002 rebuild exon 560161 560534 . + . gene_id "RvY_03578"; transcript_id "RvY_03578.1"; Scaffold002 rebuild exon 560954 561540 . + . gene_id "RvY_03578"; transcript_id "RvY_03578.1"; Scaffold002 rebuild transcript 561805 564419 . - . gene_id "RvY_03579"; transcript_id "RvY_03579.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:1.0e-12;bit-score:71.0)"; Scaffold002 rebuild exon 561805 562299 . - . gene_id "RvY_03579"; transcript_id "RvY_03579.1"; Scaffold002 rebuild exon 562372 562563 . - . gene_id "RvY_03579"; transcript_id "RvY_03579.1"; Scaffold002 rebuild exon 562647 562927 . - . gene_id "RvY_03579"; transcript_id "RvY_03579.1"; Scaffold002 rebuild exon 563309 564222 . - . gene_id "RvY_03579"; transcript_id "RvY_03579.1"; Scaffold002 rebuild exon 564364 564419 . - . gene_id "RvY_03579"; transcript_id "RvY_03579.1"; Scaffold002 rebuild transcript 574904 583210 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold002 rebuild exon 574904 574962 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 576495 576627 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 578547 578701 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 578769 578921 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 579964 580102 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 580212 580532 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 582762 583013 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild exon 583067 583210 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.1"; Scaffold002 rebuild transcript 568440 580074 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold002 rebuild exon 568440 568657 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 568770 568969 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 569205 569300 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 574745 574962 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 576495 576627 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 578548 578701 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 578768 578921 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild exon 579964 580074 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.2"; Scaffold002 rebuild transcript 583016 592093 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.3"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold002 rebuild exon 583016 583195 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.3"; Scaffold002 rebuild exon 587044 587115 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.3"; Scaffold002 rebuild exon 590794 590883 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.3"; Scaffold002 rebuild exon 591485 592093 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.3"; Scaffold002 rebuild transcript 576528 580595 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.4"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold002 rebuild exon 576528 576627 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.4"; Scaffold002 rebuild exon 578548 578701 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.4"; Scaffold002 rebuild exon 578769 578921 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.4"; Scaffold002 rebuild exon 579964 580102 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.4"; Scaffold002 rebuild exon 580212 580595 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.4"; Scaffold002 rebuild transcript 579974 583088 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.5"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold002 rebuild exon 579974 580102 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.5"; Scaffold002 rebuild exon 580212 580532 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.5"; Scaffold002 rebuild exon 582762 583088 . + . gene_id "RvY_03580"; transcript_id "RvY_03580.5"; Scaffold002 rebuild transcript 584386 585922 . - . gene_id "RvY_03581"; transcript_id "RvY_03581.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold002 rebuild exon 584386 584415 . - . gene_id "RvY_03581"; transcript_id "RvY_03581.1"; Scaffold002 rebuild exon 584786 584964 . - . gene_id "RvY_03581"; transcript_id "RvY_03581.1"; Scaffold002 rebuild exon 585043 585294 . - . gene_id "RvY_03581"; transcript_id "RvY_03581.1"; Scaffold002 rebuild exon 585383 585719 . - . gene_id "RvY_03581"; transcript_id "RvY_03581.1"; Scaffold002 rebuild exon 585806 585922 . - . gene_id "RvY_03581"; transcript_id "RvY_03581.1"; Scaffold002 rebuild transcript 591601 591873 . - . gene_id "RvY_03582"; transcript_id "RvY_03582.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 591601 591873 . - . gene_id "RvY_03582"; transcript_id "RvY_03582.1"; Scaffold002 rebuild transcript 594426 597143 . - . gene_id "RvY_03583"; transcript_id "RvY_03583.1"; annotation "hypothetical protein."; Pfam "[Shugoshin_C] Shugoshin C terminus"; Scaffold002 rebuild exon 594426 595549 . - . gene_id "RvY_03583"; transcript_id "RvY_03583.1"; Scaffold002 rebuild exon 596103 596160 . - . gene_id "RvY_03583"; transcript_id "RvY_03583.1"; Scaffold002 rebuild exon 596304 596394 . - . gene_id "RvY_03583"; transcript_id "RvY_03583.1"; Scaffold002 rebuild exon 596549 596675 . - . gene_id "RvY_03583"; transcript_id "RvY_03583.1"; Scaffold002 rebuild exon 596858 597143 . - . gene_id "RvY_03583"; transcript_id "RvY_03583.1"; Scaffold002 rebuild transcript 597247 597776 . + . gene_id "RvY_03584"; transcript_id "RvY_03584.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 597247 597283 . + . gene_id "RvY_03584"; transcript_id "RvY_03584.1"; Scaffold002 rebuild exon 597688 597776 . + . gene_id "RvY_03584"; transcript_id "RvY_03584.1"; Scaffold002 rebuild transcript 598011 599097 . - . gene_id "RvY_03585"; transcript_id "RvY_03585.1"; gene_name "Lamprin"; annotation "hypothetical protein."; CDD "Lamprin. This family consists of several lamprin proteins from the Sea lamprey Petromyzon marinus. Lamprin, an insoluble non-collagen, non-elastin protein, is the major connective tissue component of the fibrillar extracellular matrix of lamprey annular cartilage. Although not generally homologous to any other protein, soluble lamprins contain a tandemly repeated peptide sequence (GGLGY) which is present in both silkmoth chorion proteins and spider dragline silk. Strong homologies to this repeat sequence are also present in several mammalian and avian elastins. It is thought that these proteins share a structural motif which promotes self-aggregation and fibril formation in proteins through interdigitation of hydrophobic side chains in beta-sheet/beta-turn structures, a motif that has been preserved in recognisable form over several hundred million years of evolution."; similar_genes "LAMR_PETMA(e-value:1.8e-10;bit-score:64.0)"; Scaffold002 rebuild exon 598011 598279 . - . gene_id "RvY_03585"; transcript_id "RvY_03585.1"; Scaffold002 rebuild exon 598557 598658 . - . gene_id "RvY_03585"; transcript_id "RvY_03585.1"; Scaffold002 rebuild exon 598764 599097 . - . gene_id "RvY_03585"; transcript_id "RvY_03585.1"; Scaffold002 rebuild transcript 600844 601146 . - . gene_id "RvY_03588"; transcript_id "RvY_03588.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 600844 601146 . - . gene_id "RvY_03588"; transcript_id "RvY_03588.1"; Scaffold002 rebuild transcript 602300 605882 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; gene_name "RFXX"; annotation "regulatory factor X, other"; Pfam "[RFX_DNA_binding] RFX DNA-binding domain|(1,2,4)[Pox_D5] Poxvirus D5 protein-like"; KO "K09175"; similar_genes "RFX4_DANRE(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 602300 602472 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 602691 602766 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 602861 603031 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 603103 603284 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 603693 604119 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 604199 604281 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 604355 604503 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 604573 604673 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 604895 605044 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 605127 605371 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 605463 605592 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild exon 605673 605882 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.1"; Scaffold002 rebuild transcript 601778 604781 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; gene_name "RFXX"; annotation "regulatory factor X, other"; Pfam "[RFX_DNA_binding] RFX DNA-binding domain|(1,2,4)[Pox_D5] Poxvirus D5 protein-like"; KO "K09175"; similar_genes "RFX4_DANRE(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 601778 601881 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 601989 602235 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 602291 602472 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 602691 602766 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 602861 603031 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 603103 603284 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 603693 604119 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 604199 604281 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 604355 604503 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild exon 604573 604781 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.2"; Scaffold002 rebuild transcript 602921 605882 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; gene_name "RFXX"; annotation "regulatory factor X, other"; Pfam "[RFX_DNA_binding] RFX DNA-binding domain|(1,2,4)[Pox_D5] Poxvirus D5 protein-like"; KO "K09175"; similar_genes "RFX4_DANRE(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 602921 603031 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 603103 603284 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 603693 604119 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 604199 604281 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 604355 604503 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 604573 604622 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 604895 605044 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 605127 605371 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 605463 605592 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild exon 605673 605882 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.3"; Scaffold002 rebuild transcript 601778 604285 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; gene_name "RFXX"; annotation "regulatory factor X, other"; Pfam "[RFX_DNA_binding] RFX DNA-binding domain|(1,2,4)[Pox_D5] Poxvirus D5 protein-like"; KO "K09175"; similar_genes "RFX4_DANRE(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 601778 601881 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 601989 602235 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 602291 602472 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 602691 602766 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 602861 603031 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 603103 603284 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 603693 604119 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild exon 604199 604285 . + . gene_id "RvY_03589"; transcript_id "RvY_03589.4"; Scaffold002 rebuild transcript 606191 608158 . - . gene_id "RvY_03590"; transcript_id "RvY_03590.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 606191 607204 . - . gene_id "RvY_03590"; transcript_id "RvY_03590.1"; Scaffold002 rebuild exon 607559 608158 . - . gene_id "RvY_03590"; transcript_id "RvY_03590.1"; Scaffold002 rebuild transcript 609039 616962 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|[Ion_trans] Ion transport protein"; similar_genes "SLO_DROME(e-value:1.3e-21;bit-score:101.0)"; Scaffold002 rebuild exon 609039 609104 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 609181 609320 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 609781 610192 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 610325 610386 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 610465 610579 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 610904 611015 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 611101 611252 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 611337 611423 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 611498 611581 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 611681 611886 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 612412 612835 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 613054 613154 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 613219 613371 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 613674 613753 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 613913 614063 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 614146 614380 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 615015 615522 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 616119 616252 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 616329 616529 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild exon 616777 616962 . + . gene_id "RvY_03591"; transcript_id "RvY_03591.1"; Scaffold002 rebuild transcript 619811 620891 . - . gene_id "RvY_03592"; transcript_id "RvY_03592.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold002 rebuild exon 619811 620646 . - . gene_id "RvY_03592"; transcript_id "RvY_03592.1"; Scaffold002 rebuild exon 620717 620891 . - . gene_id "RvY_03592"; transcript_id "RvY_03592.1"; Scaffold002 rebuild transcript 624099 624269 . + . gene_id "RvY_03593"; transcript_id "RvY_03593.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 624099 624269 . + . gene_id "RvY_03593"; transcript_id "RvY_03593.1"; Scaffold002 rebuild transcript 624439 624875 . + . gene_id "RvY_03594"; transcript_id "RvY_03594.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 624439 624510 . + . gene_id "RvY_03594"; transcript_id "RvY_03594.1"; Scaffold002 rebuild exon 624729 624875 . + . gene_id "RvY_03594"; transcript_id "RvY_03594.1"; Scaffold002 rebuild transcript 633230 633583 . - . gene_id "RvY_03595"; transcript_id "RvY_03595.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 633230 633583 . - . gene_id "RvY_03595"; transcript_id "RvY_03595.1"; Scaffold002 rebuild transcript 633626 633820 . + . gene_id "RvY_03596"; transcript_id "RvY_03596.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 633626 633820 . + . gene_id "RvY_03596"; transcript_id "RvY_03596.1"; Scaffold002 rebuild transcript 636499 638733 . - . gene_id "RvY_03597"; transcript_id "RvY_03597.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 636499 636816 . - . gene_id "RvY_03597"; transcript_id "RvY_03597.1"; Scaffold002 rebuild exon 638590 638733 . - . gene_id "RvY_03597"; transcript_id "RvY_03597.1"; Scaffold002 rebuild transcript 639516 641754 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(1)TRFR_BOVIN(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 639516 639716 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.1"; Scaffold002 rebuild exon 641190 641347 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.1"; Scaffold002 rebuild exon 641712 641754 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.1"; Scaffold002 rebuild transcript 641490 641819 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(1)TRFR_BOVIN(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 641490 641819 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.2"; Scaffold002 rebuild transcript 639482 641209 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(1)TRFR_BOVIN(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 639482 639716 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.3"; Scaffold002 rebuild exon 641190 641209 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.3"; Scaffold002 rebuild transcript 641782 642006 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.4"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(1)TRFR_BOVIN(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 641782 642006 . + . gene_id "RvY_03598"; transcript_id "RvY_03598.4"; Scaffold002 rebuild transcript 642637 642891 . + . gene_id "RvY_03599"; transcript_id "RvY_03599.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 642637 642891 . + . gene_id "RvY_03599"; transcript_id "RvY_03599.1"; Scaffold002 rebuild transcript 645044 646466 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.1"; annotation "hypothetical protein."; Pfam "(2,3)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(2,3)TRFR_CHICK(e-value:6.7e-08;bit-score:55.0)"; Scaffold002 rebuild exon 645044 645451 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.1"; Scaffold002 rebuild exon 645748 645973 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.1"; Scaffold002 rebuild exon 646117 646466 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.1"; Scaffold002 rebuild transcript 644200 646242 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.2"; annotation "hypothetical protein."; Pfam "(2,3)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(2,3)TRFR_CHICK(e-value:6.7e-08;bit-score:55.0)"; Scaffold002 rebuild exon 644200 644385 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.2"; Scaffold002 rebuild exon 644449 644606 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.2"; Scaffold002 rebuild exon 644983 645451 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.2"; Scaffold002 rebuild exon 646117 646242 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.2"; Scaffold002 rebuild transcript 644200 645550 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.3"; annotation "hypothetical protein."; Pfam "(2,3)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(2,3)TRFR_CHICK(e-value:6.7e-08;bit-score:55.0)"; Scaffold002 rebuild exon 644200 644385 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.3"; Scaffold002 rebuild exon 644449 644606 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.3"; Scaffold002 rebuild exon 644983 645550 . + . gene_id "RvY_03600"; transcript_id "RvY_03600.3"; Scaffold002 rebuild transcript 647060 648247 . - . gene_id "RvY_03601"; transcript_id "RvY_03601.1"; annotation "hypothetical protein."; Pfam "[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold002 rebuild exon 647060 647697 . - . gene_id "RvY_03601"; transcript_id "RvY_03601.1"; Scaffold002 rebuild exon 647773 647835 . - . gene_id "RvY_03601"; transcript_id "RvY_03601.1"; Scaffold002 rebuild exon 647926 648063 . - . gene_id "RvY_03601"; transcript_id "RvY_03601.1"; Scaffold002 rebuild exon 648208 648247 . - . gene_id "RvY_03601"; transcript_id "RvY_03601.1"; Scaffold002 rebuild transcript 649515 651200 . - . gene_id "RvY_03602"; transcript_id "RvY_03602.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 649515 650089 . - . gene_id "RvY_03602"; transcript_id "RvY_03602.1"; Scaffold002 rebuild exon 651059 651200 . - . gene_id "RvY_03602"; transcript_id "RvY_03602.1"; Scaffold002 rebuild transcript 652083 653054 . + . gene_id "RvY_03603"; transcript_id "RvY_03603.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 652083 652200 . + . gene_id "RvY_03603"; transcript_id "RvY_03603.1"; Scaffold002 rebuild exon 652263 652621 . + . gene_id "RvY_03603"; transcript_id "RvY_03603.1"; Scaffold002 rebuild exon 652659 652840 . + . gene_id "RvY_03603"; transcript_id "RvY_03603.1"; Scaffold002 rebuild exon 652910 653054 . + . gene_id "RvY_03603"; transcript_id "RvY_03603.1"; Scaffold002 rebuild transcript 653085 653879 . + . gene_id "RvY_03604"; transcript_id "RvY_03604.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 653085 653879 . + . gene_id "RvY_03604"; transcript_id "RvY_03604.1"; Scaffold002 rebuild transcript 657407 659594 . + . gene_id "RvY_03605"; transcript_id "RvY_03605.1"; product "FOXO"; gene_name "FOXO3"; annotation "FOXO | putative Forkhead box protein O"; Pfam "[Fork_head] Fork head domain"; CDD "FORKHEAD. FORKHEAD, also known as a ""winged helix"""; KO "K09408"; similar_genes "FOXO_DROME(e-value:3.4e-43;bit-score:173.0)"; Scaffold002 rebuild exon 657407 657850 . + . gene_id "RvY_03605"; transcript_id "RvY_03605.1"; Scaffold002 rebuild exon 658038 658121 . + . gene_id "RvY_03605"; transcript_id "RvY_03605.1"; Scaffold002 rebuild exon 658252 658684 . + . gene_id "RvY_03605"; transcript_id "RvY_03605.1"; Scaffold002 rebuild exon 659086 659594 . + . gene_id "RvY_03605"; transcript_id "RvY_03605.1"; Scaffold002 rebuild transcript 660876 661094 . - . gene_id "RvY_03606"; transcript_id "RvY_03606.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 660876 661094 . - . gene_id "RvY_03606"; transcript_id "RvY_03606.1"; Scaffold002 rebuild transcript 660973 661398 . + . gene_id "RvY_03607"; transcript_id "RvY_03607.1"; annotation "hypothetical protein."; Pfam "[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; Scaffold002 rebuild exon 660973 661144 . + . gene_id "RvY_03607"; transcript_id "RvY_03607.1"; Scaffold002 rebuild exon 661232 661398 . + . gene_id "RvY_03607"; transcript_id "RvY_03607.1"; Scaffold002 rebuild transcript 662595 663053 . + . gene_id "RvY_03608"; transcript_id "RvY_03608.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 662595 663053 . + . gene_id "RvY_03608"; transcript_id "RvY_03608.1"; Scaffold002 rebuild transcript 663473 663820 . + . gene_id "RvY_03609"; transcript_id "RvY_03609.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 663473 663820 . + . gene_id "RvY_03609"; transcript_id "RvY_03609.1"; Scaffold002 rebuild transcript 664237 665027 . - . gene_id "RvY_03610"; transcript_id "RvY_03610.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 664237 664484 . - . gene_id "RvY_03610"; transcript_id "RvY_03610.1"; Scaffold002 rebuild exon 664562 665027 . - . gene_id "RvY_03610"; transcript_id "RvY_03610.1"; Scaffold002 rebuild transcript 666747 667386 . + . gene_id "RvY_03611"; transcript_id "RvY_03611.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 666747 666837 . + . gene_id "RvY_03611"; transcript_id "RvY_03611.1"; Scaffold002 rebuild exon 666935 667386 . + . gene_id "RvY_03611"; transcript_id "RvY_03611.1"; Scaffold002 rebuild transcript 667579 667980 . + . gene_id "RvY_03612"; transcript_id "RvY_03612.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 667579 667980 . + . gene_id "RvY_03612"; transcript_id "RvY_03612.1"; Scaffold002 rebuild transcript 669311 670432 . + . gene_id "RvY_03613"; transcript_id "RvY_03613.1"; annotation "hypothetical protein."; Pfam "[Amino_oxidase] Flavin containing amine oxidoreductase"; Scaffold002 rebuild exon 669311 669816 . + . gene_id "RvY_03613"; transcript_id "RvY_03613.1"; Scaffold002 rebuild exon 670093 670432 . + . gene_id "RvY_03613"; transcript_id "RvY_03613.1"; Scaffold002 rebuild transcript 669311 669820 . + . gene_id "RvY_03613"; transcript_id "RvY_03613.2"; annotation "hypothetical protein."; Pfam "[Amino_oxidase] Flavin containing amine oxidoreductase"; Scaffold002 rebuild exon 669311 669820 . + . gene_id "RvY_03613"; transcript_id "RvY_03613.2"; Scaffold002 rebuild transcript 671603 675032 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; gene_name "PAOX"; annotation "N1-acetylpolyamine oxidase [EC:1.5.3.13]"; Pfam "[FAD_binding_2] FAD binding domain|[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; EC "EC1.5.3.13"; KO "K00308"; similar_genes "PAOX_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 671603 671927 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; Scaffold002 rebuild exon 672910 673044 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; Scaffold002 rebuild exon 673141 673304 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; Scaffold002 rebuild exon 673513 673727 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; Scaffold002 rebuild exon 673814 674494 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; Scaffold002 rebuild exon 674771 675032 . + . gene_id "RvY_03614"; transcript_id "RvY_03614.1"; Scaffold002 rebuild transcript 671799 672008 . - . gene_id "RvY_03615"; transcript_id "RvY_03615.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 671799 672008 . - . gene_id "RvY_03615"; transcript_id "RvY_03615.1"; Scaffold002 rebuild transcript 675559 677808 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 675559 676093 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.1"; Scaffold002 rebuild exon 676322 676557 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.1"; Scaffold002 rebuild exon 676635 676747 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.1"; Scaffold002 rebuild exon 676822 677135 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.1"; Scaffold002 rebuild exon 677480 677808 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.1"; Scaffold002 rebuild transcript 675576 677808 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 675576 675645 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; Scaffold002 rebuild exon 675707 676093 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; Scaffold002 rebuild exon 676322 676557 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; Scaffold002 rebuild exon 676635 676747 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; Scaffold002 rebuild exon 676822 677135 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; Scaffold002 rebuild exon 677480 677808 . + . gene_id "RvY_03616"; transcript_id "RvY_03616.2"; Scaffold002 rebuild transcript 678501 680389 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.1"; annotation "hypothetical protein."; Pfam "[LIM]"; Scaffold002 rebuild exon 678501 678563 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.1"; Scaffold002 rebuild exon 678846 679124 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.1"; Scaffold002 rebuild exon 679187 679486 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.1"; Scaffold002 rebuild exon 679950 680192 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.1"; Scaffold002 rebuild exon 680282 680389 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.1"; Scaffold002 rebuild transcript 678828 679549 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.2"; annotation "hypothetical protein."; Pfam "[LIM]"; Scaffold002 rebuild exon 678828 679124 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.2"; Scaffold002 rebuild exon 679187 679549 . + . gene_id "RvY_03617"; transcript_id "RvY_03617.2"; Scaffold002 rebuild transcript 681404 682322 . + . gene_id "RvY_03618"; transcript_id "RvY_03618.1"; annotation "hypothetical protein."; Pfam "[LIM]"; Scaffold002 rebuild exon 681404 681460 . + . gene_id "RvY_03618"; transcript_id "RvY_03618.1"; Scaffold002 rebuild exon 681852 682085 . + . gene_id "RvY_03618"; transcript_id "RvY_03618.1"; Scaffold002 rebuild exon 682167 682322 . + . gene_id "RvY_03618"; transcript_id "RvY_03618.1"; Scaffold002 rebuild transcript 685157 685402 . + . gene_id "RvY_03619"; transcript_id "RvY_03619.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 685157 685402 . + . gene_id "RvY_03619"; transcript_id "RvY_03619.1"; Scaffold002 rebuild transcript 687810 688541 . + . gene_id "RvY_03620"; transcript_id "RvY_03620.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 687810 688541 . + . gene_id "RvY_03620"; transcript_id "RvY_03620.1"; Scaffold002 rebuild transcript 689176 690944 . - . gene_id "RvY_03621"; transcript_id "RvY_03621.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 689176 689242 . - . gene_id "RvY_03621"; transcript_id "RvY_03621.1"; Scaffold002 rebuild exon 689317 689612 . - . gene_id "RvY_03621"; transcript_id "RvY_03621.1"; Scaffold002 rebuild exon 690849 690944 . - . gene_id "RvY_03621"; transcript_id "RvY_03621.1"; Scaffold002 rebuild transcript 691440 691886 . - . gene_id "RvY_03622"; transcript_id "RvY_03622.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 691440 691886 . - . gene_id "RvY_03622"; transcript_id "RvY_03622.1"; Scaffold002 rebuild transcript 691485 691886 . - . gene_id "RvY_03622"; transcript_id "RvY_03622.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 691485 691485 . - . gene_id "RvY_03622"; transcript_id "RvY_03622.2"; Scaffold002 rebuild exon 691552 691886 . - . gene_id "RvY_03622"; transcript_id "RvY_03622.2"; Scaffold002 rebuild transcript 691967 692748 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 691967 692100 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.1"; Scaffold002 rebuild exon 692161 692271 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.1"; Scaffold002 rebuild exon 692342 692419 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.1"; Scaffold002 rebuild exon 692486 692576 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.1"; Scaffold002 rebuild exon 692653 692748 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.1"; Scaffold002 rebuild transcript 692083 692789 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 692083 692100 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.2"; Scaffold002 rebuild exon 692161 692271 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.2"; Scaffold002 rebuild exon 692342 692419 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.2"; Scaffold002 rebuild exon 692486 692576 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.2"; Scaffold002 rebuild exon 692653 692789 . - . gene_id "RvY_03623"; transcript_id "RvY_03623.2"; Scaffold002 rebuild transcript 692849 693159 . - . gene_id "RvY_03624"; transcript_id "RvY_03624.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 692849 692902 . - . gene_id "RvY_03624"; transcript_id "RvY_03624.1"; Scaffold002 rebuild exon 693034 693159 . - . gene_id "RvY_03624"; transcript_id "RvY_03624.1"; Scaffold002 rebuild transcript 693175 693433 . - . gene_id "RvY_03625"; transcript_id "RvY_03625.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 693175 693276 . - . gene_id "RvY_03625"; transcript_id "RvY_03625.1"; Scaffold002 rebuild exon 693365 693433 . - . gene_id "RvY_03625"; transcript_id "RvY_03625.1"; Scaffold002 rebuild transcript 693882 694064 . - . gene_id "RvY_03626"; transcript_id "RvY_03626.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 693882 694064 . - . gene_id "RvY_03626"; transcript_id "RvY_03626.1"; Scaffold002 rebuild transcript 694394 695056 . + . gene_id "RvY_03627"; transcript_id "RvY_03627.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 694394 695056 . + . gene_id "RvY_03627"; transcript_id "RvY_03627.1"; Scaffold002 rebuild transcript 695201 695467 . - . gene_id "RvY_03628"; transcript_id "RvY_03628.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 695201 695467 . - . gene_id "RvY_03628"; transcript_id "RvY_03628.1"; Scaffold002 rebuild transcript 695546 695866 . + . gene_id "RvY_03629"; transcript_id "RvY_03629.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 695546 695866 . + . gene_id "RvY_03629"; transcript_id "RvY_03629.1"; Scaffold002 rebuild transcript 697217 698264 . - . gene_id "RvY_03630"; transcript_id "RvY_03630.1"; annotation "hypothetical protein."; Pfam "[Collagen] Collagen triple helix repeat (20 copies)"; Scaffold002 rebuild exon 697217 697473 . - . gene_id "RvY_03630"; transcript_id "RvY_03630.1"; Scaffold002 rebuild exon 697713 697892 . - . gene_id "RvY_03630"; transcript_id "RvY_03630.1"; Scaffold002 rebuild exon 698258 698264 . - . gene_id "RvY_03630"; transcript_id "RvY_03630.1"; Scaffold002 rebuild transcript 702976 704375 . + . gene_id "RvY_03631"; transcript_id "RvY_03631.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.115"; similar_genes "UFOG2_MANES(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 702976 703723 . + . gene_id "RvY_03631"; transcript_id "RvY_03631.1"; Scaffold002 rebuild exon 703915 704375 . + . gene_id "RvY_03631"; transcript_id "RvY_03631.1"; Scaffold002 rebuild transcript 706913 709724 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.1"; gene_name "(1)MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "(1)The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 706913 707482 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.1"; Scaffold002 rebuild exon 708668 709157 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.1"; Scaffold002 rebuild exon 709438 709724 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.1"; Scaffold002 rebuild transcript 708659 709724 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.2"; gene_name "(1)MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "(1)The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 708659 709157 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.2"; Scaffold002 rebuild exon 709438 709724 . - . gene_id "RvY_03634"; transcript_id "RvY_03634.2"; Scaffold002 rebuild transcript 710225 712839 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERM_MOUSE(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 710225 710396 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 710478 710583 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 710777 710949 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 711222 711757 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 711900 712052 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 712146 712168 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 712259 712372 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 712461 712511 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 712606 712721 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild exon 712799 712839 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.1"; Scaffold002 rebuild transcript 710557 712839 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERM_MOUSE(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 710557 710717 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 710777 710949 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 711222 711757 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 711900 712052 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 712146 712168 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 712259 712372 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 712461 712511 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 712606 712721 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild exon 712799 712839 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.2"; Scaffold002 rebuild transcript 710557 712839 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERM_MOUSE(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 710557 710714 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 710777 710949 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 711222 711757 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 711900 712052 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 712146 712168 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 712259 712372 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 712461 712511 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 712606 712721 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild exon 712799 712839 . - . gene_id "RvY_03635"; transcript_id "RvY_03635.3"; Scaffold002 rebuild transcript 712953 714204 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 712953 713081 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; Scaffold002 rebuild exon 713185 713208 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; Scaffold002 rebuild exon 713282 713394 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; Scaffold002 rebuild exon 713487 713653 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; Scaffold002 rebuild exon 713933 714088 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; Scaffold002 rebuild exon 714179 714204 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.1"; Scaffold002 rebuild transcript 713479 714204 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.2"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 713479 713653 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.2"; Scaffold002 rebuild exon 713933 714088 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.2"; Scaffold002 rebuild exon 714179 714204 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.2"; Scaffold002 rebuild transcript 714041 714616 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.3"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 714041 714088 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.3"; Scaffold002 rebuild exon 714179 714346 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.3"; Scaffold002 rebuild exon 714479 714616 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.3"; Scaffold002 rebuild transcript 713284 714005 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.4"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 713284 713394 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.4"; Scaffold002 rebuild exon 713487 713653 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.4"; Scaffold002 rebuild exon 713933 714005 . - . gene_id "RvY_03636"; transcript_id "RvY_03636.4"; Scaffold002 rebuild transcript 716699 717265 . - . gene_id "RvY_03637"; transcript_id "RvY_03637.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 716699 716704 . - . gene_id "RvY_03637"; transcript_id "RvY_03637.1"; Scaffold002 rebuild exon 716794 716922 . - . gene_id "RvY_03637"; transcript_id "RvY_03637.1"; Scaffold002 rebuild exon 716958 717047 . - . gene_id "RvY_03637"; transcript_id "RvY_03637.1"; Scaffold002 rebuild exon 717185 717265 . - . gene_id "RvY_03637"; transcript_id "RvY_03637.1"; Scaffold002 rebuild transcript 717992 718577 . - . gene_id "RvY_03638"; transcript_id "RvY_03638.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 717992 718042 . - . gene_id "RvY_03638"; transcript_id "RvY_03638.1"; Scaffold002 rebuild exon 718143 718399 . - . gene_id "RvY_03638"; transcript_id "RvY_03638.1"; Scaffold002 rebuild exon 718481 718577 . - . gene_id "RvY_03638"; transcript_id "RvY_03638.1"; Scaffold002 rebuild transcript 719997 721772 . - . gene_id "RvY_03639"; transcript_id "RvY_03639.1"; annotation "putative Retinitis pigmentosa 9 protein"; similar_genes "RP9_HUMAN(e-value:2.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 719997 720338 . - . gene_id "RvY_03639"; transcript_id "RvY_03639.1"; Scaffold002 rebuild exon 720955 721046 . - . gene_id "RvY_03639"; transcript_id "RvY_03639.1"; Scaffold002 rebuild exon 721342 721375 . - . gene_id "RvY_03639"; transcript_id "RvY_03639.1"; Scaffold002 rebuild exon 721441 721570 . - . gene_id "RvY_03639"; transcript_id "RvY_03639.1"; Scaffold002 rebuild exon 721642 721772 . - . gene_id "RvY_03639"; transcript_id "RvY_03639.1"; Scaffold002 rebuild transcript 722160 723373 . + . gene_id "RvY_03640"; transcript_id "RvY_03640.1"; annotation "hypothetical protein."; KO "K14618"; similar_genes "MMAC_CHICK(e-value:3.9e-06;bit-score:49.0)"; Scaffold002 rebuild exon 722160 722355 . + . gene_id "RvY_03640"; transcript_id "RvY_03640.1"; Scaffold002 rebuild exon 722409 722758 . + . gene_id "RvY_03640"; transcript_id "RvY_03640.1"; Scaffold002 rebuild exon 723065 723373 . + . gene_id "RvY_03640"; transcript_id "RvY_03640.1"; Scaffold002 rebuild transcript 723423 724943 . - . gene_id "RvY_03641"; transcript_id "RvY_03641.1"; gene_name "MRP_L46"; annotation "hypothetical protein."; Pfam "[MRP-L46] 39S mitochondrial ribosomal protein L46|[NUDIX]"; CDD "Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U"; Scaffold002 rebuild exon 723423 723638 . - . gene_id "RvY_03641"; transcript_id "RvY_03641.1"; Scaffold002 rebuild exon 723728 724005 . - . gene_id "RvY_03641"; transcript_id "RvY_03641.1"; Scaffold002 rebuild exon 724280 724425 . - . gene_id "RvY_03641"; transcript_id "RvY_03641.1"; Scaffold002 rebuild exon 724507 724774 . - . gene_id "RvY_03641"; transcript_id "RvY_03641.1"; Scaffold002 rebuild exon 724847 724943 . - . gene_id "RvY_03641"; transcript_id "RvY_03641.1"; Scaffold002 rebuild transcript 725444 726736 . + . gene_id "RvY_03642"; transcript_id "RvY_03642.1"; gene_name "KLF6_7"; annotation "putative Krueppel-like factor 5"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09207"; similar_genes "KLF5_HUMAN(e-value:3.3e-37;bit-score:153.0)"; Scaffold002 rebuild exon 725444 725720 . + . gene_id "RvY_03642"; transcript_id "RvY_03642.1"; Scaffold002 rebuild exon 726167 726583 . + . gene_id "RvY_03642"; transcript_id "RvY_03642.1"; Scaffold002 rebuild exon 726642 726736 . + . gene_id "RvY_03642"; transcript_id "RvY_03642.1"; Scaffold002 rebuild transcript 727193 728653 . + . gene_id "RvY_03643"; transcript_id "RvY_03643.1"; gene_name "COG2850"; annotation "hypothetical protein."; Pfam "[Cupin_8] Cupin-like domain|[Cupin_4] Cupin superfamily protein"; CDD "Uncharacterized conserved protein [Function unknown]"; similar_genes "CB060_HUMAN(e-value:2.2e-23;bit-score:107.0)"; Scaffold002 rebuild exon 727193 727708 . + . gene_id "RvY_03643"; transcript_id "RvY_03643.1"; Scaffold002 rebuild exon 728146 728423 . + . gene_id "RvY_03643"; transcript_id "RvY_03643.1"; Scaffold002 rebuild exon 728488 728653 . + . gene_id "RvY_03643"; transcript_id "RvY_03643.1"; Scaffold002 rebuild transcript 729768 730646 . - . gene_id "RvY_03644"; transcript_id "RvY_03644.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 729768 730646 . - . gene_id "RvY_03644"; transcript_id "RvY_03644.1"; Scaffold002 rebuild transcript 730806 731015 . - . gene_id "RvY_03645"; transcript_id "RvY_03645.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 730806 731015 . - . gene_id "RvY_03645"; transcript_id "RvY_03645.1"; Scaffold002 rebuild transcript 732294 733445 . + . gene_id "RvY_03646"; transcript_id "RvY_03646.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 732294 732589 . + . gene_id "RvY_03646"; transcript_id "RvY_03646.1"; Scaffold002 rebuild exon 732672 732787 . + . gene_id "RvY_03646"; transcript_id "RvY_03646.1"; Scaffold002 rebuild exon 732852 732939 . + . gene_id "RvY_03646"; transcript_id "RvY_03646.1"; Scaffold002 rebuild exon 733235 733445 . + . gene_id "RvY_03646"; transcript_id "RvY_03646.1"; Scaffold002 rebuild transcript 734197 736077 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; gene_name "K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; KO "K01025"; Scaffold002 rebuild exon 734197 734321 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; Scaffold002 rebuild exon 734400 734512 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; Scaffold002 rebuild exon 734813 735045 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; Scaffold002 rebuild exon 735115 735339 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; Scaffold002 rebuild exon 735696 735879 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; Scaffold002 rebuild exon 735956 736077 . + . gene_id "RvY_03647"; transcript_id "RvY_03647.1"; Scaffold002 rebuild transcript 737995 739956 . + . gene_id "RvY_03648"; transcript_id "RvY_03648.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 737995 738106 . + . gene_id "RvY_03648"; transcript_id "RvY_03648.1"; Scaffold002 rebuild exon 738178 738775 . + . gene_id "RvY_03648"; transcript_id "RvY_03648.1"; Scaffold002 rebuild exon 738981 739956 . + . gene_id "RvY_03648"; transcript_id "RvY_03648.1"; Scaffold002 rebuild transcript 741024 741689 . - . gene_id "RvY_03649"; transcript_id "RvY_03649.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 741024 741179 . - . gene_id "RvY_03649"; transcript_id "RvY_03649.1"; Scaffold002 rebuild exon 741573 741689 . - . gene_id "RvY_03649"; transcript_id "RvY_03649.1"; Scaffold002 rebuild transcript 743720 752357 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; gene_name "CHS1"; annotation "chitin synthase [EC:2.4.1.16]"; Pfam "[Chitin_synth_2] Chitin synthase|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_trans_2_3] Glycosyl transferase family group 2"; CDD "C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified."; EC "EC2.4.1.16"; KO "K00698"; Scaffold002 rebuild exon 743720 743926 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 746257 746435 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 747012 747238 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 747309 747460 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 747737 748704 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 748973 749066 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 749134 749407 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 749714 749991 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 750090 750501 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 750571 750990 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 751308 752046 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild exon 752333 752357 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.1"; Scaffold002 rebuild transcript 743720 752354 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; gene_name "CHS1"; annotation "chitin synthase [EC:2.4.1.16]"; Pfam "[Chitin_synth_2] Chitin synthase|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_trans_2_3] Glycosyl transferase family group 2"; CDD "C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified."; EC "EC2.4.1.16"; KO "K00698"; Scaffold002 rebuild exon 743720 743926 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 746257 746435 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 747012 747238 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 747309 747460 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 747737 748704 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 748973 749066 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 749134 749407 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 749714 749991 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 750090 750501 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 750571 750990 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 751308 752046 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild exon 752333 752354 . + . gene_id "RvY_03650"; transcript_id "RvY_03650.2"; Scaffold002 rebuild transcript 754643 754996 . + . gene_id "RvY_03651"; transcript_id "RvY_03651.1"; annotation "hypothetical protein."; Pfam "(2)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 754643 754996 . + . gene_id "RvY_03651"; transcript_id "RvY_03651.1"; Scaffold002 rebuild transcript 754865 755098 . + . gene_id "RvY_03651"; transcript_id "RvY_03651.2"; annotation "hypothetical protein."; Pfam "(2)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 754865 755098 . + . gene_id "RvY_03651"; transcript_id "RvY_03651.2"; Scaffold002 rebuild transcript 763348 764467 . + . gene_id "RvY_03652"; transcript_id "RvY_03652.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 763348 764223 . + . gene_id "RvY_03652"; transcript_id "RvY_03652.1"; Scaffold002 rebuild exon 764282 764467 . + . gene_id "RvY_03652"; transcript_id "RvY_03652.1"; Scaffold002 rebuild transcript 763426 764250 . + . gene_id "RvY_03652"; transcript_id "RvY_03652.2"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 763426 764250 . + . gene_id "RvY_03652"; transcript_id "RvY_03652.2"; Scaffold002 rebuild transcript 764944 765129 . + . gene_id "RvY_03653"; transcript_id "RvY_03653.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 764944 765129 . + . gene_id "RvY_03653"; transcript_id "RvY_03653.1"; Scaffold002 rebuild transcript 768617 769137 . + . gene_id "RvY_03654"; transcript_id "RvY_03654.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 768617 769081 . + . gene_id "RvY_03654"; transcript_id "RvY_03654.1"; Scaffold002 rebuild exon 769087 769137 . + . gene_id "RvY_03654"; transcript_id "RvY_03654.1"; Scaffold002 rebuild transcript 769144 777968 . - . gene_id "RvY_03655"; transcript_id "RvY_03655.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 769144 769259 . - . gene_id "RvY_03655"; transcript_id "RvY_03655.1"; Scaffold002 rebuild exon 775550 776301 . - . gene_id "RvY_03655"; transcript_id "RvY_03655.1"; Scaffold002 rebuild exon 777919 777968 . - . gene_id "RvY_03655"; transcript_id "RvY_03655.1"; Scaffold002 rebuild transcript 778358 780805 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; gene_name "Phe4hydrox_tetr"; annotation "Phenylalanine-4-hydroxylase"; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PMID:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered."; EC "EC1.14.16.1"; similar_genes "(1)PH4H_BOVIN(e-value:3.0e-80;bit-score:296.0)(2)PH4H_BOVIN(e-value:2.1e-51;bit-score:200.0)"; Scaffold002 rebuild exon 778358 778492 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 778571 778921 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 778978 779045 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 779109 779159 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 779244 779389 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 779460 779535 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 779597 779783 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 779990 780091 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 780380 780513 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 780579 780694 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild exon 780762 780805 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.1"; Scaffold002 rebuild transcript 779308 780759 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; gene_name "Phe4hydrox_tetr"; annotation "Phenylalanine-4-hydroxylase"; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PMID:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered."; EC "EC1.14.16.1"; similar_genes "(1)PH4H_BOVIN(e-value:3.0e-80;bit-score:296.0)(2)PH4H_BOVIN(e-value:2.1e-51;bit-score:200.0)"; Scaffold002 rebuild exon 779308 779389 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; Scaffold002 rebuild exon 779460 779535 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; Scaffold002 rebuild exon 779597 779783 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; Scaffold002 rebuild exon 779990 780091 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; Scaffold002 rebuild exon 780380 780513 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; Scaffold002 rebuild exon 780579 780759 . + . gene_id "RvY_03656"; transcript_id "RvY_03656.2"; Scaffold002 rebuild transcript 783113 784312 . + . gene_id "RvY_03657"; transcript_id "RvY_03657.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 783113 784312 . + . gene_id "RvY_03657"; transcript_id "RvY_03657.1"; Scaffold002 rebuild transcript 782899 783654 . + . gene_id "RvY_03657"; transcript_id "RvY_03657.2"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 782899 783654 . + . gene_id "RvY_03657"; transcript_id "RvY_03657.2"; Scaffold002 rebuild transcript 787695 788667 . + . gene_id "RvY_03658"; transcript_id "RvY_03658.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 787695 787842 . + . gene_id "RvY_03658"; transcript_id "RvY_03658.1"; Scaffold002 rebuild exon 788495 788667 . + . gene_id "RvY_03658"; transcript_id "RvY_03658.1"; Scaffold002 rebuild transcript 790302 791462 . - . gene_id "RvY_03659"; transcript_id "RvY_03659.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 790302 790455 . - . gene_id "RvY_03659"; transcript_id "RvY_03659.1"; Scaffold002 rebuild exon 790766 790866 . - . gene_id "RvY_03659"; transcript_id "RvY_03659.1"; Scaffold002 rebuild exon 791190 791462 . - . gene_id "RvY_03659"; transcript_id "RvY_03659.1"; Scaffold002 rebuild transcript 792892 795046 . - . gene_id "RvY_03660"; transcript_id "RvY_03660.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 792892 793396 . - . gene_id "RvY_03660"; transcript_id "RvY_03660.1"; Scaffold002 rebuild exon 793462 794337 . - . gene_id "RvY_03660"; transcript_id "RvY_03660.1"; Scaffold002 rebuild exon 795030 795046 . - . gene_id "RvY_03660"; transcript_id "RvY_03660.1"; Scaffold002 rebuild transcript 796479 798159 . + . gene_id "RvY_03661"; transcript_id "RvY_03661.1"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; Scaffold002 rebuild exon 796479 797604 . + . gene_id "RvY_03661"; transcript_id "RvY_03661.1"; Scaffold002 rebuild exon 797784 797878 . + . gene_id "RvY_03661"; transcript_id "RvY_03661.1"; Scaffold002 rebuild exon 797956 798159 . + . gene_id "RvY_03661"; transcript_id "RvY_03661.1"; Scaffold002 rebuild transcript 797141 797639 . - . gene_id "RvY_03662"; transcript_id "RvY_03662.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 797141 797178 . - . gene_id "RvY_03662"; transcript_id "RvY_03662.1"; Scaffold002 rebuild exon 797285 797639 . - . gene_id "RvY_03662"; transcript_id "RvY_03662.1"; Scaffold002 rebuild transcript 799823 800187 . - . gene_id "RvY_03663"; transcript_id "RvY_03663.1"; annotation "hypothetical protein."; Pfam "[Crisp]"; Scaffold002 rebuild exon 799823 799977 . - . gene_id "RvY_03663"; transcript_id "RvY_03663.1"; Scaffold002 rebuild exon 800097 800187 . - . gene_id "RvY_03663"; transcript_id "RvY_03663.1"; Scaffold002 rebuild transcript 800538 803568 . - . gene_id "RvY_03664"; transcript_id "RvY_03664.1"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family"; Scaffold002 rebuild exon 800538 800719 . - . gene_id "RvY_03664"; transcript_id "RvY_03664.1"; Scaffold002 rebuild exon 800807 801520 . - . gene_id "RvY_03664"; transcript_id "RvY_03664.1"; Scaffold002 rebuild exon 803277 803568 . - . gene_id "RvY_03664"; transcript_id "RvY_03664.1"; Scaffold002 rebuild transcript 804485 805037 . - . gene_id "RvY_03665"; transcript_id "RvY_03665.1"; gene_name "Crisp"; annotation "hypothetical protein."; Pfam "[Crisp]"; CDD "Crisp. This domain is found on Crisp proteins which contain pfam00188 and has been termed the Crisp domain. It is found in the mammalian reproductive tract and the venom of reptiles, and has been shown to regulate ryanodine receptor Ca2+ signalling. It contains 10 conserved cysteines which are all involved in disulphide bonds and is structurally related to the ion channel inhibitor toxins BgK and ShK."; Scaffold002 rebuild exon 804485 804630 . - . gene_id "RvY_03665"; transcript_id "RvY_03665.1"; Scaffold002 rebuild exon 804699 804820 . - . gene_id "RvY_03665"; transcript_id "RvY_03665.1"; Scaffold002 rebuild exon 804910 805037 . - . gene_id "RvY_03665"; transcript_id "RvY_03665.1"; Scaffold002 rebuild transcript 805040 807087 . - . gene_id "RvY_03666"; transcript_id "RvY_03666.1"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Mucin] Mucin-like glycoprotein"; similar_genes "SGS3_DROYA(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 805040 805057 . - . gene_id "RvY_03666"; transcript_id "RvY_03666.1"; Scaffold002 rebuild exon 805135 805304 . - . gene_id "RvY_03666"; transcript_id "RvY_03666.1"; Scaffold002 rebuild exon 805575 806582 . - . gene_id "RvY_03666"; transcript_id "RvY_03666.1"; Scaffold002 rebuild exon 806751 807087 . - . gene_id "RvY_03666"; transcript_id "RvY_03666.1"; Scaffold002 rebuild transcript 809092 810070 . - . gene_id "RvY_03667"; transcript_id "RvY_03667.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:8.9e-10;bit-score:62.0)"; Scaffold002 rebuild exon 809092 809516 . - . gene_id "RvY_03667"; transcript_id "RvY_03667.1"; Scaffold002 rebuild exon 809615 809746 . - . gene_id "RvY_03667"; transcript_id "RvY_03667.1"; Scaffold002 rebuild exon 809830 810070 . - . gene_id "RvY_03667"; transcript_id "RvY_03667.1"; Scaffold002 rebuild transcript 810526 811097 . + . gene_id "RvY_03668"; transcript_id "RvY_03668.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 810526 810664 . + . gene_id "RvY_03668"; transcript_id "RvY_03668.1"; Scaffold002 rebuild exon 810976 811097 . + . gene_id "RvY_03668"; transcript_id "RvY_03668.1"; Scaffold002 rebuild transcript 814583 814852 . + . gene_id "RvY_03669"; transcript_id "RvY_03669.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 814583 814852 . + . gene_id "RvY_03669"; transcript_id "RvY_03669.1"; Scaffold002 rebuild transcript 816113 817130 . - . gene_id "RvY_03670"; transcript_id "RvY_03670.1"; annotation "hypothetical protein."; similar_genes "Y6504_DICDI(e-value:6.0e-11;bit-score:65.0)"; Scaffold002 rebuild exon 816113 816177 . - . gene_id "RvY_03670"; transcript_id "RvY_03670.1"; Scaffold002 rebuild exon 816254 817130 . - . gene_id "RvY_03670"; transcript_id "RvY_03670.1"; Scaffold002 rebuild transcript 819508 819891 . - . gene_id "RvY_03671"; transcript_id "RvY_03671.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 819508 819891 . - . gene_id "RvY_03671"; transcript_id "RvY_03671.1"; Scaffold002 rebuild transcript 820877 821206 . + . gene_id "RvY_03672"; transcript_id "RvY_03672.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 820877 821206 . + . gene_id "RvY_03672"; transcript_id "RvY_03672.1"; Scaffold002 rebuild transcript 821217 821960 . + . gene_id "RvY_03673"; transcript_id "RvY_03673.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 821217 821960 . + . gene_id "RvY_03673"; transcript_id "RvY_03673.1"; Scaffold002 rebuild transcript 822255 823801 . - . gene_id "RvY_03674"; transcript_id "RvY_03674.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 822255 822434 . - . gene_id "RvY_03674"; transcript_id "RvY_03674.1"; Scaffold002 rebuild exon 822732 823310 . - . gene_id "RvY_03674"; transcript_id "RvY_03674.1"; Scaffold002 rebuild exon 823757 823801 . - . gene_id "RvY_03674"; transcript_id "RvY_03674.1"; Scaffold002 rebuild transcript 826520 826681 . - . gene_id "RvY_03675"; transcript_id "RvY_03675.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 826520 826681 . - . gene_id "RvY_03675"; transcript_id "RvY_03675.1"; Scaffold002 rebuild transcript 827442 827591 . - . gene_id "RvY_03676"; transcript_id "RvY_03676.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 827442 827591 . - . gene_id "RvY_03676"; transcript_id "RvY_03676.1"; Scaffold002 rebuild transcript 827637 828573 . - . gene_id "RvY_03677"; transcript_id "RvY_03677.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 827637 827831 . - . gene_id "RvY_03677"; transcript_id "RvY_03677.1"; Scaffold002 rebuild exon 828351 828438 . - . gene_id "RvY_03677"; transcript_id "RvY_03677.1"; Scaffold002 rebuild exon 828530 828573 . - . gene_id "RvY_03677"; transcript_id "RvY_03677.1"; Scaffold002 rebuild transcript 831119 831442 . + . gene_id "RvY_03678"; transcript_id "RvY_03678.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 831119 831442 . + . gene_id "RvY_03678"; transcript_id "RvY_03678.1"; Scaffold002 rebuild transcript 832950 833771 . + . gene_id "RvY_03679"; transcript_id "RvY_03679.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 832950 832982 . + . gene_id "RvY_03679"; transcript_id "RvY_03679.1"; Scaffold002 rebuild exon 833226 833771 . + . gene_id "RvY_03679"; transcript_id "RvY_03679.1"; Scaffold002 rebuild transcript 833920 834171 . - . gene_id "RvY_03680"; transcript_id "RvY_03680.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 833920 834171 . - . gene_id "RvY_03680"; transcript_id "RvY_03680.1"; Scaffold002 framed transcript 841885 843566 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; gene_name "(3)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[HNOBA] Heme NO binding associated|(3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold002 framed exon 841885 841934 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; Scaffold002 framed exon 842053 842182 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; Scaffold002 framed exon 842263 842704 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; Scaffold002 framed exon 843119 843228 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; Scaffold002 framed exon 843297 843419 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; Scaffold002 framed exon 843513 843566 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.1"; Scaffold002 rebuild transcript 842108 842724 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.2"; gene_name "(3)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[HNOBA] Heme NO binding associated|(3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold002 rebuild exon 842108 842182 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.2"; Scaffold002 rebuild exon 842263 842724 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.2"; Scaffold002 rebuild transcript 842338 843270 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.3"; gene_name "(3)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[HNOBA] Heme NO binding associated|(3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold002 rebuild exon 842338 842704 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.3"; Scaffold002 rebuild exon 843119 843270 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.3"; Scaffold002 rebuild transcript 843078 843562 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.4"; gene_name "(3)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[HNOBA] Heme NO binding associated|(3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold002 rebuild exon 843078 843228 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.4"; Scaffold002 rebuild exon 843297 843562 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.4"; Scaffold002 rebuild transcript 842338 842724 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.5"; gene_name "(3)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[HNOBA] Heme NO binding associated|(3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold002 rebuild exon 842338 842724 . + . gene_id "RvY_03681"; transcript_id "RvY_03681.5"; Scaffold002 rebuild transcript 844732 845447 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.1"; gene_name "(1,2)COG4907"; annotation "hypothetical protein."; CDD "(1,2)Predicted membrane protein [Function unknown]"; EC "(1,2)EC3.6.1.-"; similar_genes "(1)DED1_MAGGR(e-value:4.7e-13;bit-score:72.0)(2)DED1_MAGGR(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 844732 844771 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.1"; Scaffold002 rebuild exon 844857 845333 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.1"; Scaffold002 rebuild exon 845422 845447 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.1"; Scaffold002 rebuild transcript 844732 845567 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.2"; gene_name "(1,2)COG4907"; annotation "hypothetical protein."; CDD "(1,2)Predicted membrane protein [Function unknown]"; EC "(1,2)EC3.6.1.-"; similar_genes "(1)DED1_MAGGR(e-value:4.7e-13;bit-score:72.0)(2)DED1_MAGGR(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 844732 844771 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.2"; Scaffold002 rebuild exon 844857 845333 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.2"; Scaffold002 rebuild exon 845554 845567 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.2"; Scaffold002 rebuild transcript 845049 845691 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.3"; gene_name "(1,2)COG4907"; annotation "hypothetical protein."; CDD "(1,2)Predicted membrane protein [Function unknown]"; EC "(1,2)EC3.6.1.-"; similar_genes "(1)DED1_MAGGR(e-value:4.7e-13;bit-score:72.0)(2)DED1_MAGGR(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 845049 845333 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.3"; Scaffold002 rebuild exon 845422 845454 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.3"; Scaffold002 rebuild exon 845554 845691 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.3"; Scaffold002 rebuild transcript 845049 845691 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.4"; gene_name "(1,2)COG4907"; annotation "hypothetical protein."; CDD "(1,2)Predicted membrane protein [Function unknown]"; EC "(1,2)EC3.6.1.-"; similar_genes "(1)DED1_MAGGR(e-value:4.7e-13;bit-score:72.0)(2)DED1_MAGGR(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 845049 845333 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.4"; Scaffold002 rebuild exon 845554 845691 . + . gene_id "RvY_03682"; transcript_id "RvY_03682.4"; Scaffold002 rebuild transcript 845795 846148 . + . gene_id "RvY_03683"; transcript_id "RvY_03683.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 845795 846148 . + . gene_id "RvY_03683"; transcript_id "RvY_03683.1"; Scaffold002 rebuild transcript 847359 848258 . - . gene_id "RvY_03684"; transcript_id "RvY_03684.1"; annotation "hypothetical protein."; Pfam "[EMP24_GP25L] emp24/gp25L/p24 family/GOLD"; KO "K14825"; similar_genes "TMED3_HUMAN(e-value:6.4e-19;bit-score:92.0)"; Scaffold002 rebuild exon 847359 847586 . - . gene_id "RvY_03684"; transcript_id "RvY_03684.1"; Scaffold002 rebuild exon 847643 847888 . - . gene_id "RvY_03684"; transcript_id "RvY_03684.1"; Scaffold002 rebuild exon 848097 848258 . - . gene_id "RvY_03684"; transcript_id "RvY_03684.1"; Scaffold002 rebuild transcript 849770 850699 . + . gene_id "RvY_03685"; transcript_id "RvY_03685.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 849770 849856 . + . gene_id "RvY_03685"; transcript_id "RvY_03685.1"; Scaffold002 rebuild exon 850147 850408 . + . gene_id "RvY_03685"; transcript_id "RvY_03685.1"; Scaffold002 rebuild exon 850479 850699 . + . gene_id "RvY_03685"; transcript_id "RvY_03685.1"; Scaffold002 rebuild transcript 851665 852141 . - . gene_id "RvY_03686"; transcript_id "RvY_03686.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 851665 852141 . - . gene_id "RvY_03686"; transcript_id "RvY_03686.1"; Scaffold002 rebuild transcript 852210 852538 . - . gene_id "RvY_03687"; transcript_id "RvY_03687.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 852210 852301 . - . gene_id "RvY_03687"; transcript_id "RvY_03687.1"; Scaffold002 rebuild exon 852454 852538 . - . gene_id "RvY_03687"; transcript_id "RvY_03687.1"; Scaffold002 rebuild transcript 853662 853820 . - . gene_id "RvY_03688"; transcript_id "RvY_03688.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 853662 853820 . - . gene_id "RvY_03688"; transcript_id "RvY_03688.1"; Scaffold002 rebuild transcript 854184 854357 . - . gene_id "RvY_03689"; transcript_id "RvY_03689.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 854184 854357 . - . gene_id "RvY_03689"; transcript_id "RvY_03689.1"; Scaffold002 rebuild transcript 855513 858213 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; gene_name "lipA"; annotation "Lipoyl synthase, mitochondrial"; Pfam "[Radical_SAM] Radical SAM superfamily"; CDD "lipoyl synthase; Provisional"; EC "EC2.8.1.8"; KO "K03644"; similar_genes "LIAS_MOUSE(e-value:2.0e-128;bit-score:456.0)"; Scaffold002 rebuild exon 855513 855575 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 855689 855843 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 855899 855992 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 856979 857059 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 857131 857287 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 857348 857534 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 857697 857842 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 857903 857973 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild exon 858031 858213 . + . gene_id "RvY_03690"; transcript_id "RvY_03690.1"; Scaffold002 rebuild transcript 856352 856618 . - . gene_id "RvY_03691"; transcript_id "RvY_03691.1"; annotation "hypothetical protein."; Pfam "[DUF3317]"; Scaffold002 rebuild exon 856352 856618 . - . gene_id "RvY_03691"; transcript_id "RvY_03691.1"; Scaffold002 rebuild transcript 860832 862236 . - . gene_id "RvY_03692"; transcript_id "RvY_03692.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 860832 861256 . - . gene_id "RvY_03692"; transcript_id "RvY_03692.1"; Scaffold002 rebuild exon 861447 861944 . - . gene_id "RvY_03692"; transcript_id "RvY_03692.1"; Scaffold002 rebuild exon 862152 862236 . - . gene_id "RvY_03692"; transcript_id "RvY_03692.1"; Scaffold002 rebuild transcript 864289 866158 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 864289 864530 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; Scaffold002 rebuild exon 864597 864801 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; Scaffold002 rebuild exon 864861 865028 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; Scaffold002 rebuild exon 865095 865597 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; Scaffold002 rebuild exon 865667 865808 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; Scaffold002 rebuild exon 866030 866158 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.1"; Scaffold002 rebuild transcript 864289 866158 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 864289 864530 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; Scaffold002 rebuild exon 864597 864801 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; Scaffold002 rebuild exon 864861 865028 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; Scaffold002 rebuild exon 865095 865597 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; Scaffold002 rebuild exon 865667 865808 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; Scaffold002 rebuild exon 866117 866158 . - . gene_id "RvY_03693"; transcript_id "RvY_03693.2"; Scaffold002 rebuild transcript 866438 867367 . - . gene_id "RvY_03694"; transcript_id "RvY_03694.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 866438 866518 . - . gene_id "RvY_03694"; transcript_id "RvY_03694.1"; Scaffold002 rebuild exon 867347 867367 . - . gene_id "RvY_03694"; transcript_id "RvY_03694.1"; Scaffold002 rebuild transcript 868772 869652 . - . gene_id "RvY_03695"; transcript_id "RvY_03695.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 868772 869274 . - . gene_id "RvY_03695"; transcript_id "RvY_03695.1"; Scaffold002 rebuild exon 869355 869652 . - . gene_id "RvY_03695"; transcript_id "RvY_03695.1"; Scaffold002 rebuild transcript 871035 871208 . + . gene_id "RvY_03696"; transcript_id "RvY_03696.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 871035 871208 . + . gene_id "RvY_03696"; transcript_id "RvY_03696.1"; Scaffold002 rebuild transcript 871800 872796 . + . gene_id "RvY_03697"; transcript_id "RvY_03697.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 871800 871880 . + . gene_id "RvY_03697"; transcript_id "RvY_03697.1"; Scaffold002 rebuild exon 872704 872796 . + . gene_id "RvY_03697"; transcript_id "RvY_03697.1"; Scaffold002 rebuild transcript 873357 873575 . + . gene_id "RvY_03698"; transcript_id "RvY_03698.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 873357 873575 . + . gene_id "RvY_03698"; transcript_id "RvY_03698.1"; Scaffold002 rebuild transcript 874561 877237 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold002 rebuild exon 874561 874739 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 874971 875162 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 875435 875484 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 875696 875881 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 875948 875983 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 876049 876199 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 876388 876430 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 876503 876540 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 876618 876699 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild exon 877016 877237 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.1"; Scaffold002 rebuild transcript 874273 876535 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold002 rebuild exon 874273 874376 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 874454 874494 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 874571 874739 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 874971 875162 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 875435 875484 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 875696 875881 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 875948 875983 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 876049 876199 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 876388 876430 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild exon 876503 876535 . - . gene_id "RvY_03699"; transcript_id "RvY_03699.2"; Scaffold002 rebuild transcript 878035 880480 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; gene_name "2A1904"; annotation "putative Acidic leucine-rich nuclear phosphoprotein 32 family member B"; Pfam "[LRR_8] Leucine rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; CDD "K+-dependent Na+/Ca+ exchanger."; similar_genes "AN32B_BOVIN(e-value:8.1e-32;bit-score:135.0)"; Scaffold002 rebuild exon 878035 878082 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 878770 878922 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 878985 879107 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 879431 879758 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 879825 879874 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 879945 880029 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 880191 880274 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild exon 880350 880480 . + . gene_id "RvY_03700"; transcript_id "RvY_03700.1"; Scaffold002 rebuild transcript 881326 885790 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; gene_name "PK"; annotation "Pyruvate kinase isozymes M1/M2"; Pfam "[PK_C] Pyruvate kinase, alpha/beta domain|[PK] Pyruvate kinase, barrel domain"; CDD "Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer."; EC "EC2.7.1.40"; KO "K00873"; similar_genes "KPYM_HUMAN(e-value:5.2e-97;bit-score:351.0)"; Scaffold002 rebuild exon 881326 881522 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 881584 881702 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 881961 882280 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 882529 882679 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 882764 882891 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 883161 883303 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 883377 883689 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 885224 885315 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 885417 885534 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild exon 885671 885790 . - . gene_id "RvY_03701"; transcript_id "RvY_03701.1"; Scaffold002 rebuild transcript 886502 887632 . + . gene_id "RvY_03702"; transcript_id "RvY_03702.1"; gene_name "spoT"; annotation "HD domain-containing protein 3"; Pfam "[HD_4] HD domain"; CDD "(p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species."; EC "EC3.1.7.2"; KO "K01139"; similar_genes "HDDC3_XENTR(e-value:3.3e-54;bit-score:209.0)"; Scaffold002 rebuild exon 886502 886801 . + . gene_id "RvY_03702"; transcript_id "RvY_03702.1"; Scaffold002 rebuild exon 886870 886965 . + . gene_id "RvY_03702"; transcript_id "RvY_03702.1"; Scaffold002 rebuild exon 887303 887632 . + . gene_id "RvY_03702"; transcript_id "RvY_03702.1"; Scaffold002 rebuild transcript 888319 889081 . + . gene_id "RvY_03703"; transcript_id "RvY_03703.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold002 rebuild exon 888319 888463 . + . gene_id "RvY_03703"; transcript_id "RvY_03703.1"; Scaffold002 rebuild exon 888770 888960 . + . gene_id "RvY_03703"; transcript_id "RvY_03703.1"; Scaffold002 rebuild exon 889058 889081 . + . gene_id "RvY_03703"; transcript_id "RvY_03703.1"; Scaffold002 rebuild transcript 889096 890986 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold002 rebuild exon 889096 889183 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; Scaffold002 rebuild exon 889249 889476 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; Scaffold002 rebuild exon 889948 890029 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; Scaffold002 rebuild exon 890426 890604 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; Scaffold002 rebuild exon 890711 890812 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; Scaffold002 rebuild exon 890892 890986 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.1"; Scaffold002 rebuild transcript 889096 890895 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.2"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold002 rebuild exon 889096 889183 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.2"; Scaffold002 rebuild exon 889249 889476 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.2"; Scaffold002 rebuild exon 889948 890029 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.2"; Scaffold002 rebuild exon 890426 890604 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.2"; Scaffold002 rebuild exon 890711 890895 . + . gene_id "RvY_03704"; transcript_id "RvY_03704.2"; Scaffold002 rebuild transcript 891376 897359 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 891376 891760 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; Scaffold002 rebuild exon 892653 892839 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; Scaffold002 rebuild exon 893609 893853 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; Scaffold002 rebuild exon 894477 894580 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; Scaffold002 rebuild exon 896504 896597 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; Scaffold002 rebuild exon 896959 897359 . - . gene_id "RvY_03705"; transcript_id "RvY_03705.1"; Scaffold002 rebuild transcript 897796 898005 . + . gene_id "RvY_03706"; transcript_id "RvY_03706.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 897796 898005 . + . gene_id "RvY_03706"; transcript_id "RvY_03706.1"; Scaffold002 rebuild transcript 901256 903122 . + . gene_id "RvY_03707"; transcript_id "RvY_03707.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 901256 901373 . + . gene_id "RvY_03707"; transcript_id "RvY_03707.1"; Scaffold002 rebuild exon 901445 902030 . + . gene_id "RvY_03707"; transcript_id "RvY_03707.1"; Scaffold002 rebuild exon 902144 903122 . + . gene_id "RvY_03707"; transcript_id "RvY_03707.1"; Scaffold002 rebuild transcript 909583 910687 . + . gene_id "RvY_03708"; transcript_id "RvY_03708.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 909583 910152 . + . gene_id "RvY_03708"; transcript_id "RvY_03708.1"; Scaffold002 rebuild exon 910490 910687 . + . gene_id "RvY_03708"; transcript_id "RvY_03708.1"; Scaffold002 rebuild transcript 915191 916045 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.1"; gene_name "(3)PTZ00146"; annotation "hypothetical protein."; CDD "(3)fibrillarin; Provisional"; similar_genes "(3)K2C1_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold002 rebuild exon 915191 916045 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.1"; Scaffold002 rebuild transcript 915191 916045 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.2"; gene_name "(3)PTZ00146"; annotation "hypothetical protein."; CDD "(3)fibrillarin; Provisional"; similar_genes "(3)K2C1_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold002 rebuild exon 915191 915712 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.2"; Scaffold002 rebuild exon 915803 916045 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.2"; Scaffold002 rebuild transcript 915052 915717 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.3"; gene_name "(3)PTZ00146"; annotation "hypothetical protein."; CDD "(3)fibrillarin; Provisional"; similar_genes "(3)K2C1_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold002 rebuild exon 915052 915103 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.3"; Scaffold002 rebuild exon 915188 915717 . + . gene_id "RvY_03709"; transcript_id "RvY_03709.3"; Scaffold002 rebuild transcript 916178 916806 . - . gene_id "RvY_03710"; transcript_id "RvY_03710.1"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain"; Scaffold002 rebuild exon 916178 916248 . - . gene_id "RvY_03710"; transcript_id "RvY_03710.1"; Scaffold002 rebuild exon 916587 916806 . - . gene_id "RvY_03710"; transcript_id "RvY_03710.1"; Scaffold002 rebuild transcript 921616 922277 . - . gene_id "RvY_03711"; transcript_id "RvY_03711.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 921616 921686 . - . gene_id "RvY_03711"; transcript_id "RvY_03711.1"; Scaffold002 rebuild exon 921806 922277 . - . gene_id "RvY_03711"; transcript_id "RvY_03711.1"; Scaffold002 rebuild transcript 924187 924771 . + . gene_id "RvY_03712"; transcript_id "RvY_03712.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 924187 924304 . + . gene_id "RvY_03712"; transcript_id "RvY_03712.1"; Scaffold002 rebuild exon 924372 924638 . + . gene_id "RvY_03712"; transcript_id "RvY_03712.1"; Scaffold002 rebuild exon 924644 924771 . + . gene_id "RvY_03712"; transcript_id "RvY_03712.1"; Scaffold002 rebuild transcript 925395 925730 . + . gene_id "RvY_03713"; transcript_id "RvY_03713.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 925395 925730 . + . gene_id "RvY_03713"; transcript_id "RvY_03713.1"; Scaffold002 rebuild transcript 927651 930133 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; gene_name "(1,2,3,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(1,2)[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1,2,3,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1,2,3)HR4_DROME(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 927651 927734 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 927977 928118 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 928205 928372 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 928514 929055 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 929123 929290 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 929361 929574 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 929670 929797 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild exon 929990 930133 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.1"; Scaffold002 rebuild transcript 927651 930133 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; gene_name "(1,2,3,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(1,2)[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1,2,3,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1,2,3)HR4_DROME(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 927651 927734 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 927977 928118 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 928205 928348 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 928514 929055 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 929123 929290 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 929361 929574 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 929670 929797 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild exon 929990 930133 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.2"; Scaffold002 rebuild transcript 927651 929657 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; gene_name "(1,2,3,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(1,2)[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1,2,3,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1,2,3)HR4_DROME(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 927651 927734 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; Scaffold002 rebuild exon 927977 928118 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; Scaffold002 rebuild exon 928205 928372 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; Scaffold002 rebuild exon 928514 929055 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; Scaffold002 rebuild exon 929123 929290 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; Scaffold002 rebuild exon 929361 929657 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.3"; Scaffold002 rebuild transcript 927651 929464 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; gene_name "(1,2,3,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(1,2)[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1,2,3,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1,2,3)HR4_DROME(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 927651 927734 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; Scaffold002 rebuild exon 927820 927918 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; Scaffold002 rebuild exon 927977 928118 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; Scaffold002 rebuild exon 928205 928372 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; Scaffold002 rebuild exon 928514 929055 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; Scaffold002 rebuild exon 929123 929464 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.4"; Scaffold002 rebuild transcript 928106 929657 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.5"; gene_name "(1,2,3,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(1,2)[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1,2,3,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(1,2,3)HR4_DROME(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 928106 928118 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.5"; Scaffold002 rebuild exon 928205 928348 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.5"; Scaffold002 rebuild exon 928514 929055 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.5"; Scaffold002 rebuild exon 929123 929290 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.5"; Scaffold002 rebuild exon 929361 929657 . + . gene_id "RvY_03714"; transcript_id "RvY_03714.5"; Scaffold002 rebuild transcript 930473 930772 . - . gene_id "RvY_03715"; transcript_id "RvY_03715.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 930473 930772 . - . gene_id "RvY_03715"; transcript_id "RvY_03715.1"; Scaffold002 rebuild transcript 933715 934605 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.1"; gene_name "(1)PTZ00146"; annotation "hypothetical protein."; CDD "(1)fibrillarin; Provisional"; similar_genes "(1)GRP1_PHAVU(e-value:1.9e-20;bit-score:97.0)"; Scaffold002 rebuild exon 933715 933775 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.1"; Scaffold002 rebuild exon 933846 934211 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.1"; Scaffold002 rebuild exon 934340 934605 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.1"; Scaffold002 rebuild transcript 934122 934735 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.2"; gene_name "(1)PTZ00146"; annotation "hypothetical protein."; CDD "(1)fibrillarin; Provisional"; similar_genes "(1)GRP1_PHAVU(e-value:1.9e-20;bit-score:97.0)"; Scaffold002 rebuild exon 934122 934211 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.2"; Scaffold002 rebuild exon 934340 934735 . + . gene_id "RvY_03716"; transcript_id "RvY_03716.2"; Scaffold002 rebuild transcript 936024 937595 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; annotation "putative Chromaffin granule amine transporter"; Pfam "[MFS_1] Major Facilitator Superfamily|(2)[Sugar_tr] Sugar (and other) transporter"; similar_genes "VMAT1_HUMAN(e-value:7.4e-37;bit-score:152.0)"; Scaffold002 rebuild exon 936024 936117 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; Scaffold002 rebuild exon 936237 936329 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; Scaffold002 rebuild exon 936601 936690 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; Scaffold002 rebuild exon 936759 937090 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; Scaffold002 rebuild exon 937170 937233 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; Scaffold002 rebuild exon 937351 937595 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.1"; Scaffold002 rebuild transcript 936890 937595 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.2"; annotation "putative Chromaffin granule amine transporter"; Pfam "[MFS_1] Major Facilitator Superfamily|(2)[Sugar_tr] Sugar (and other) transporter"; similar_genes "VMAT1_HUMAN(e-value:7.4e-37;bit-score:152.0)"; Scaffold002 rebuild exon 936890 937090 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.2"; Scaffold002 rebuild exon 937170 937233 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.2"; Scaffold002 rebuild exon 937351 937595 . + . gene_id "RvY_03717"; transcript_id "RvY_03717.2"; Scaffold002 rebuild transcript 939960 942791 . - . gene_id "RvY_03718"; transcript_id "RvY_03718.1"; gene_name "NPYNR"; annotation "neuropeptide Y receptor, invertebrate"; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; KO "K04209"; Scaffold002 rebuild exon 939960 940576 . - . gene_id "RvY_03718"; transcript_id "RvY_03718.1"; Scaffold002 rebuild exon 941939 942791 . - . gene_id "RvY_03718"; transcript_id "RvY_03718.1"; Scaffold002 rebuild transcript 948263 948504 . + . gene_id "RvY_03719"; transcript_id "RvY_03719.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 948263 948289 . + . gene_id "RvY_03719"; transcript_id "RvY_03719.1"; Scaffold002 rebuild exon 948316 948504 . + . gene_id "RvY_03719"; transcript_id "RvY_03719.1"; Scaffold002 rebuild transcript 951535 955470 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 951535 951822 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; Scaffold002 rebuild exon 952300 952602 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; Scaffold002 rebuild exon 953170 953886 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; Scaffold002 rebuild exon 954141 954418 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; Scaffold002 rebuild exon 954882 955275 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; Scaffold002 rebuild exon 955345 955470 . + . gene_id "RvY_03720"; transcript_id "RvY_03720.1"; Scaffold002 rebuild transcript 951552 951755 . - . gene_id "RvY_03721"; transcript_id "RvY_03721.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 951552 951755 . - . gene_id "RvY_03721"; transcript_id "RvY_03721.1"; Scaffold002 rebuild transcript 955686 958076 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 955686 956477 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild exon 956554 956733 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild exon 956803 957042 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild exon 957115 957229 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild exon 957308 957453 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild exon 957527 957739 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild exon 957819 958076 . - . gene_id "RvY_03722"; transcript_id "RvY_03722.1"; Scaffold002 rebuild transcript 958524 960067 . - . gene_id "RvY_03723"; transcript_id "RvY_03723.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold002 rebuild exon 958524 958795 . - . gene_id "RvY_03723"; transcript_id "RvY_03723.1"; Scaffold002 rebuild exon 959121 959309 . - . gene_id "RvY_03723"; transcript_id "RvY_03723.1"; Scaffold002 rebuild exon 959493 959654 . - . gene_id "RvY_03723"; transcript_id "RvY_03723.1"; Scaffold002 rebuild exon 959776 960067 . - . gene_id "RvY_03723"; transcript_id "RvY_03723.1"; Scaffold002 rebuild transcript 960174 960500 . - . gene_id "RvY_03724"; transcript_id "RvY_03724.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 960174 960500 . - . gene_id "RvY_03724"; transcript_id "RvY_03724.1"; Scaffold002 rebuild transcript 961838 962717 . - . gene_id "RvY_03725"; transcript_id "RvY_03725.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 961838 961961 . - . gene_id "RvY_03725"; transcript_id "RvY_03725.1"; Scaffold002 rebuild exon 962324 962503 . - . gene_id "RvY_03725"; transcript_id "RvY_03725.1"; Scaffold002 rebuild exon 962587 962717 . - . gene_id "RvY_03725"; transcript_id "RvY_03725.1"; Scaffold002 rebuild transcript 964099 964983 . + . gene_id "RvY_03726"; transcript_id "RvY_03726.1"; annotation "hypothetical protein."; Pfam "[DUF2870]"; Scaffold002 rebuild exon 964099 964983 . + . gene_id "RvY_03726"; transcript_id "RvY_03726.1"; Scaffold002 rebuild transcript 967554 979051 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; gene_name "NPR1"; annotation "Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; EC "EC4.6.1.2"; KO "K12323"; similar_genes "ANPRA_MOUSE(e-value:2.8e-102;bit-score:369.0)"; Scaffold002 rebuild exon 967554 967808 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 967869 967905 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 968101 968138 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 968274 968390 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 968509 968656 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 968930 969073 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 970227 970312 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 970382 970410 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 970469 970664 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 970948 971083 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 971284 971323 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 971433 971484 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 971569 971704 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 971769 971806 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 971884 972045 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 972412 972570 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 972657 972833 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 973212 973308 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 973401 973478 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 973936 974103 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 974548 974722 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 974817 974966 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 976471 976510 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 976732 976766 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 976900 976934 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 977150 977192 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 977301 977343 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 977480 977503 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 977745 977941 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 978007 978056 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 978117 978208 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 978316 978543 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild exon 978878 979051 . + . gene_id "RvY_03727"; transcript_id "RvY_03727.1"; Scaffold002 rebuild transcript 979659 980096 . - . gene_id "RvY_03728"; transcript_id "RvY_03728.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 979659 980096 . - . gene_id "RvY_03728"; transcript_id "RvY_03728.1"; Scaffold002 rebuild transcript 984532 984945 . - . gene_id "RvY_03729"; transcript_id "RvY_03729.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 984532 984945 . - . gene_id "RvY_03729"; transcript_id "RvY_03729.1"; Scaffold002 rebuild transcript 986754 986963 . + . gene_id "RvY_03730"; transcript_id "RvY_03730.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 986754 986963 . + . gene_id "RvY_03730"; transcript_id "RvY_03730.1"; Scaffold002 rebuild transcript 987013 988471 . + . gene_id "RvY_03731"; transcript_id "RvY_03731.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 987013 987124 . + . gene_id "RvY_03731"; transcript_id "RvY_03731.1"; Scaffold002 rebuild exon 988287 988471 . + . gene_id "RvY_03731"; transcript_id "RvY_03731.1"; Scaffold002 rebuild transcript 989578 990722 . + . gene_id "RvY_03732"; transcript_id "RvY_03732.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 989578 989652 . + . gene_id "RvY_03732"; transcript_id "RvY_03732.1"; Scaffold002 rebuild exon 990609 990722 . + . gene_id "RvY_03732"; transcript_id "RvY_03732.1"; Scaffold002 rebuild transcript 993279 995960 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold002 rebuild exon 993279 993384 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; Scaffold002 rebuild exon 993820 994124 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; Scaffold002 rebuild exon 994186 994692 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; Scaffold002 rebuild exon 994757 995122 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; Scaffold002 rebuild exon 995318 995686 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; Scaffold002 rebuild exon 995778 995960 . + . gene_id "RvY_03733"; transcript_id "RvY_03733.1"; Scaffold002 rebuild transcript 997463 998197 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 997463 997574 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.1"; Scaffold002 rebuild exon 997632 997799 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.1"; Scaffold002 rebuild exon 997887 998197 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.1"; Scaffold002 rebuild transcript 997463 998121 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 997463 997574 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.2"; Scaffold002 rebuild exon 997632 997799 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.2"; Scaffold002 rebuild exon 997887 997931 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.2"; Scaffold002 rebuild exon 997994 998121 . + . gene_id "RvY_03734"; transcript_id "RvY_03734.2"; Scaffold002 rebuild transcript 999221 1000711 . - . gene_id "RvY_03735"; transcript_id "RvY_03735.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 999221 999464 . - . gene_id "RvY_03735"; transcript_id "RvY_03735.1"; Scaffold002 rebuild exon 999609 999929 . - . gene_id "RvY_03735"; transcript_id "RvY_03735.1"; Scaffold002 rebuild exon 999950 1000057 . - . gene_id "RvY_03735"; transcript_id "RvY_03735.1"; Scaffold002 rebuild exon 1000563 1000711 . - . gene_id "RvY_03735"; transcript_id "RvY_03735.1"; Scaffold002 rebuild transcript 1000998 1001729 . - . gene_id "RvY_03736"; transcript_id "RvY_03736.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1000998 1001729 . - . gene_id "RvY_03736"; transcript_id "RvY_03736.1"; Scaffold002 rebuild transcript 1001895 1002382 . - . gene_id "RvY_03737"; transcript_id "RvY_03737.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 1001895 1002193 . - . gene_id "RvY_03737"; transcript_id "RvY_03737.1"; Scaffold002 rebuild exon 1002286 1002382 . - . gene_id "RvY_03737"; transcript_id "RvY_03737.1"; Scaffold002 rebuild transcript 1002905 1003790 . - . gene_id "RvY_03738"; transcript_id "RvY_03738.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1002905 1003272 . - . gene_id "RvY_03738"; transcript_id "RvY_03738.1"; Scaffold002 rebuild exon 1003580 1003790 . - . gene_id "RvY_03738"; transcript_id "RvY_03738.1"; Scaffold002 rebuild transcript 1003809 1004656 . + . gene_id "RvY_03739"; transcript_id "RvY_03739.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1003809 1003843 . + . gene_id "RvY_03739"; transcript_id "RvY_03739.1"; Scaffold002 rebuild exon 1003902 1004260 . + . gene_id "RvY_03739"; transcript_id "RvY_03739.1"; Scaffold002 rebuild exon 1004469 1004656 . + . gene_id "RvY_03739"; transcript_id "RvY_03739.1"; Scaffold002 rebuild transcript 1004714 1005067 . - . gene_id "RvY_03740"; transcript_id "RvY_03740.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 1004714 1005067 . - . gene_id "RvY_03740"; transcript_id "RvY_03740.1"; Scaffold002 rebuild transcript 1005570 1006393 . + . gene_id "RvY_03741"; transcript_id "RvY_03741.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1005570 1005605 . + . gene_id "RvY_03741"; transcript_id "RvY_03741.1"; Scaffold002 rebuild exon 1006211 1006393 . + . gene_id "RvY_03741"; transcript_id "RvY_03741.1"; Scaffold002 rebuild transcript 1007743 1009704 . + . gene_id "RvY_03742"; transcript_id "RvY_03742.1"; gene_name "PRK05648"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold002 rebuild exon 1007743 1007884 . + . gene_id "RvY_03742"; transcript_id "RvY_03742.1"; Scaffold002 rebuild exon 1007976 1008146 . + . gene_id "RvY_03742"; transcript_id "RvY_03742.1"; Scaffold002 rebuild exon 1008337 1008390 . + . gene_id "RvY_03742"; transcript_id "RvY_03742.1"; Scaffold002 rebuild exon 1008467 1009704 . + . gene_id "RvY_03742"; transcript_id "RvY_03742.1"; Scaffold002 rebuild transcript 1011453 1013433 . + . gene_id "RvY_03743"; transcript_id "RvY_03743.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1011453 1011615 . + . gene_id "RvY_03743"; transcript_id "RvY_03743.1"; Scaffold002 rebuild exon 1011698 1011865 . + . gene_id "RvY_03743"; transcript_id "RvY_03743.1"; Scaffold002 rebuild exon 1012835 1012891 . + . gene_id "RvY_03743"; transcript_id "RvY_03743.1"; Scaffold002 rebuild exon 1012961 1013433 . + . gene_id "RvY_03743"; transcript_id "RvY_03743.1"; Scaffold002 rebuild transcript 1014387 1015597 . + . gene_id "RvY_03744"; transcript_id "RvY_03744.1"; gene_name "PRK10263"; annotation "hypothetical protein."; CDD "DNA translocase FtsK; Provisional"; Scaffold002 rebuild exon 1014387 1014501 . + . gene_id "RvY_03744"; transcript_id "RvY_03744.1"; Scaffold002 rebuild exon 1014567 1014734 . + . gene_id "RvY_03744"; transcript_id "RvY_03744.1"; Scaffold002 rebuild exon 1014790 1014846 . + . gene_id "RvY_03744"; transcript_id "RvY_03744.1"; Scaffold002 rebuild exon 1014930 1015597 . + . gene_id "RvY_03744"; transcript_id "RvY_03744.1"; Scaffold002 rebuild transcript 1016609 1022755 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1016609 1016711 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1017040 1017210 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1017294 1017338 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1017411 1018067 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1018284 1019683 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1019785 1019907 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1020027 1020411 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1020828 1021154 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1021240 1021457 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1021581 1021669 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1021736 1022064 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1022352 1022544 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild exon 1022608 1022755 . + . gene_id "RvY_03745"; transcript_id "RvY_03745.1"; Scaffold002 rebuild transcript 1025694 1026131 . - . gene_id "RvY_03746"; transcript_id "RvY_03746.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1025694 1026131 . - . gene_id "RvY_03746"; transcript_id "RvY_03746.1"; Scaffold002 rebuild transcript 1026157 1026942 . - . gene_id "RvY_03747"; transcript_id "RvY_03747.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1026157 1026323 . - . gene_id "RvY_03747"; transcript_id "RvY_03747.1"; Scaffold002 rebuild exon 1026720 1026818 . - . gene_id "RvY_03747"; transcript_id "RvY_03747.1"; Scaffold002 rebuild exon 1026888 1026942 . - . gene_id "RvY_03747"; transcript_id "RvY_03747.1"; Scaffold002 rebuild transcript 1027363 1030038 . + . gene_id "RvY_03748"; transcript_id "RvY_03748.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1027363 1027384 . + . gene_id "RvY_03748"; transcript_id "RvY_03748.1"; Scaffold002 rebuild exon 1028591 1028745 . + . gene_id "RvY_03748"; transcript_id "RvY_03748.1"; Scaffold002 rebuild exon 1028838 1029225 . + . gene_id "RvY_03748"; transcript_id "RvY_03748.1"; Scaffold002 rebuild exon 1029358 1029521 . + . gene_id "RvY_03748"; transcript_id "RvY_03748.1"; Scaffold002 rebuild exon 1029628 1030038 . + . gene_id "RvY_03748"; transcript_id "RvY_03748.1"; Scaffold002 rebuild transcript 1031115 1031426 . + . gene_id "RvY_03749"; transcript_id "RvY_03749.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1031115 1031426 . + . gene_id "RvY_03749"; transcript_id "RvY_03749.1"; Scaffold002 rebuild transcript 1032234 1032293 . + . gene_id "RvY_03750"; transcript_id "RvY_03750.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1032234 1032293 . + . gene_id "RvY_03750"; transcript_id "RvY_03750.1"; Scaffold002 rebuild transcript 1035061 1037355 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; gene_name "PRK13108"; annotation "hypothetical protein."; CDD "prolipoprotein diacylglyceryl transferase; Reviewed"; Scaffold002 rebuild exon 1035061 1035087 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; Scaffold002 rebuild exon 1035428 1035646 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; Scaffold002 rebuild exon 1035718 1035830 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; Scaffold002 rebuild exon 1036134 1036290 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; Scaffold002 rebuild exon 1036418 1036618 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; Scaffold002 rebuild exon 1037044 1037355 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.1"; Scaffold002 rebuild transcript 1035061 1037355 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; gene_name "PRK13108"; annotation "hypothetical protein."; CDD "prolipoprotein diacylglyceryl transferase; Reviewed"; Scaffold002 rebuild exon 1035061 1035087 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; Scaffold002 rebuild exon 1035428 1035646 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; Scaffold002 rebuild exon 1035718 1035830 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; Scaffold002 rebuild exon 1036134 1036290 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; Scaffold002 rebuild exon 1036418 1036603 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; Scaffold002 rebuild exon 1037044 1037355 . - . gene_id "RvY_03751"; transcript_id "RvY_03751.2"; Scaffold002 rebuild transcript 1038496 1040328 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; annotation "hypothetical protein."; Pfam "[Fringe] Fringe-like|[Galactosyl_T] Galactosyltransferase"; Scaffold002 rebuild exon 1038496 1038562 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild exon 1038640 1038734 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild exon 1038836 1038927 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild exon 1038997 1039331 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild exon 1039566 1039631 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild exon 1039723 1039814 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild exon 1039891 1040328 . - . gene_id "RvY_03752"; transcript_id "RvY_03752.1"; Scaffold002 rebuild transcript 1040750 1044009 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; gene_name "PRK05434"; annotation "putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase"; Pfam "[Sulfatase]|[iPGM_N] BPG-independent PGAM N-terminus (iPGM_N)|[Metalloenzyme] Metalloenzyme superfamily"; CDD "phosphoglyceromutase; Provisional"; EC "EC5.4.2.1"; KO "K15633"; similar_genes "GPMI_CELJU(e-value:1.5e-37;bit-score:154.0)"; Scaffold002 rebuild exon 1040750 1040907 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1040987 1041121 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1041554 1041671 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1041746 1041894 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1042036 1042162 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1042250 1042359 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1042435 1042531 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1042586 1042767 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1042964 1043213 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1043708 1043877 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild exon 1043937 1044009 . - . gene_id "RvY_03753"; transcript_id "RvY_03753.1"; Scaffold002 rebuild transcript 1044311 1045257 . + . gene_id "RvY_03754"; transcript_id "RvY_03754.1"; gene_name "sodC"; annotation "Superoxide dismutase [Cu-Zn]"; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; KO "K04565"; similar_genes "SODC_HYLLA(e-value:8.3e-53;bit-score:204.0)"; Scaffold002 rebuild exon 1044311 1044434 . + . gene_id "RvY_03754"; transcript_id "RvY_03754.1"; Scaffold002 rebuild exon 1044541 1044562 . + . gene_id "RvY_03754"; transcript_id "RvY_03754.1"; Scaffold002 rebuild exon 1044771 1044898 . + . gene_id "RvY_03754"; transcript_id "RvY_03754.1"; Scaffold002 rebuild exon 1044991 1045069 . + . gene_id "RvY_03754"; transcript_id "RvY_03754.1"; Scaffold002 rebuild exon 1045140 1045257 . + . gene_id "RvY_03754"; transcript_id "RvY_03754.1"; Scaffold002 rebuild transcript 1045333 1045722 . + . gene_id "RvY_03755"; transcript_id "RvY_03755.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1045333 1045722 . + . gene_id "RvY_03755"; transcript_id "RvY_03755.1"; Scaffold002 rebuild transcript 1045943 1046506 . - . gene_id "RvY_03756"; transcript_id "RvY_03756.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1045943 1046045 . - . gene_id "RvY_03756"; transcript_id "RvY_03756.1"; Scaffold002 rebuild exon 1046360 1046418 . - . gene_id "RvY_03756"; transcript_id "RvY_03756.1"; Scaffold002 rebuild exon 1046438 1046506 . - . gene_id "RvY_03756"; transcript_id "RvY_03756.1"; Scaffold002 rebuild transcript 1047462 1048476 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.1"; gene_name "(1)sodC"; annotation "(1)putative Superoxide dismutase [Cu-Zn](2,3)hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; KO "(1)K04565"; similar_genes "(1)SODC_DANRE(e-value:1.4e-46;bit-score:184.0)(2)SODC_DANRE(e-value:1.0e-23;bit-score:108.0)(3)SODC_ANACO(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 1047462 1047645 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.1"; Scaffold002 rebuild exon 1047864 1047885 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.1"; Scaffold002 rebuild exon 1047949 1048076 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.1"; Scaffold002 rebuild exon 1048157 1048235 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.1"; Scaffold002 rebuild exon 1048308 1048476 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.1"; Scaffold002 rebuild transcript 1047462 1048147 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.2"; gene_name "(1)sodC"; annotation "(1)putative Superoxide dismutase [Cu-Zn](2,3)hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; KO "(1)K04565"; similar_genes "(1)SODC_DANRE(e-value:1.4e-46;bit-score:184.0)(2)SODC_DANRE(e-value:1.0e-23;bit-score:108.0)(3)SODC_ANACO(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 1047462 1047645 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.2"; Scaffold002 rebuild exon 1047864 1047885 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.2"; Scaffold002 rebuild exon 1047949 1048147 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.2"; Scaffold002 rebuild transcript 1047973 1048476 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.3"; gene_name "(1)sodC"; annotation "(1)putative Superoxide dismutase [Cu-Zn](2,3)hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; KO "(1)K04565"; similar_genes "(1)SODC_DANRE(e-value:1.4e-46;bit-score:184.0)(2)SODC_DANRE(e-value:1.0e-23;bit-score:108.0)(3)SODC_ANACO(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 1047973 1048078 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.3"; Scaffold002 rebuild exon 1048157 1048235 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.3"; Scaffold002 rebuild exon 1048308 1048476 . + . gene_id "RvY_03757"; transcript_id "RvY_03757.3"; Scaffold002 rebuild transcript 1048706 1049206 . - . gene_id "RvY_03758"; transcript_id "RvY_03758.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1048706 1048815 . - . gene_id "RvY_03758"; transcript_id "RvY_03758.1"; Scaffold002 rebuild exon 1048885 1049206 . - . gene_id "RvY_03758"; transcript_id "RvY_03758.1"; Scaffold002 rebuild transcript 1049741 1050679 . + . gene_id "RvY_03759"; transcript_id "RvY_03759.1"; annotation "hypothetical protein."; Pfam "[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; Scaffold002 rebuild exon 1049741 1049788 . + . gene_id "RvY_03759"; transcript_id "RvY_03759.1"; Scaffold002 rebuild exon 1049910 1050158 . + . gene_id "RvY_03759"; transcript_id "RvY_03759.1"; Scaffold002 rebuild exon 1050191 1050364 . + . gene_id "RvY_03759"; transcript_id "RvY_03759.1"; Scaffold002 rebuild exon 1050431 1050679 . + . gene_id "RvY_03759"; transcript_id "RvY_03759.1"; Scaffold002 rebuild transcript 1051012 1051308 . - . gene_id "RvY_03760"; transcript_id "RvY_03760.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1051012 1051308 . - . gene_id "RvY_03760"; transcript_id "RvY_03760.1"; Scaffold002 rebuild transcript 1051347 1052440 . - . gene_id "RvY_03761"; transcript_id "RvY_03761.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 1051347 1051433 . - . gene_id "RvY_03761"; transcript_id "RvY_03761.1"; Scaffold002 rebuild exon 1051646 1052440 . - . gene_id "RvY_03761"; transcript_id "RvY_03761.1"; Scaffold002 rebuild transcript 1056026 1056367 . - . gene_id "RvY_03762"; transcript_id "RvY_03762.1"; annotation "hypothetical protein."; Pfam "[Sulfakinin] Sulfakinin family"; Scaffold002 rebuild exon 1056026 1056367 . - . gene_id "RvY_03762"; transcript_id "RvY_03762.1"; Scaffold002 rebuild transcript 1058260 1060103 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1058260 1058625 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; Scaffold002 rebuild exon 1058782 1058853 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; Scaffold002 rebuild exon 1059226 1059308 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; Scaffold002 rebuild exon 1059397 1059502 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; Scaffold002 rebuild exon 1059601 1059689 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; Scaffold002 rebuild exon 1059902 1060103 . - . gene_id "RvY_03763"; transcript_id "RvY_03763.1"; Scaffold002 rebuild transcript 1060836 1065511 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PXDN_XENTR(e-value:1.3e-08;bit-score:58.0)"; Scaffold002 rebuild exon 1060836 1060856 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1061137 1061303 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1061363 1061529 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1061593 1061710 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1061775 1062040 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1062108 1062298 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1062614 1062694 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1062757 1063190 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1063705 1063734 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1063819 1063992 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1064336 1064562 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1065043 1065187 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild exon 1065247 1065511 . - . gene_id "RvY_03764"; transcript_id "RvY_03764.1"; Scaffold002 rebuild transcript 1069004 1069544 . - . gene_id "RvY_03765"; transcript_id "RvY_03765.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1069004 1069161 . - . gene_id "RvY_03765"; transcript_id "RvY_03765.1"; Scaffold002 rebuild exon 1069379 1069544 . - . gene_id "RvY_03765"; transcript_id "RvY_03765.1"; Scaffold002 rebuild transcript 1070159 1071279 . - . gene_id "RvY_03766"; transcript_id "RvY_03766.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1070159 1070855 . - . gene_id "RvY_03766"; transcript_id "RvY_03766.1"; Scaffold002 rebuild exon 1071080 1071279 . - . gene_id "RvY_03766"; transcript_id "RvY_03766.1"; Scaffold002 rebuild transcript 1073515 1083222 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; gene_name "SLC17A6_7_8"; annotation "Vesicular glutamate transporter 3"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "Na(+)-dependent inorganic phosphate cotransporter."; KO "K12302"; similar_genes "VGLU3_HUMAN(e-value:2.4e-84;bit-score:309.0)"; Scaffold002 rebuild exon 1073515 1073780 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1074021 1074219 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1074332 1074459 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1074725 1074835 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1074908 1075037 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1076560 1076712 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1076805 1076950 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1077096 1077270 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1077637 1077751 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1077868 1078004 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1078264 1078558 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild exon 1083098 1083222 . - . gene_id "RvY_03767"; transcript_id "RvY_03767.1"; Scaffold002 rebuild transcript 1075442 1076283 . + . gene_id "RvY_03768"; transcript_id "RvY_03768.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1075442 1075708 . + . gene_id "RvY_03768"; transcript_id "RvY_03768.1"; Scaffold002 rebuild exon 1076050 1076157 . + . gene_id "RvY_03768"; transcript_id "RvY_03768.1"; Scaffold002 rebuild exon 1076215 1076283 . + . gene_id "RvY_03768"; transcript_id "RvY_03768.1"; Scaffold002 rebuild transcript 1079657 1079959 . + . gene_id "RvY_03769"; transcript_id "RvY_03769.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1079657 1079959 . + . gene_id "RvY_03769"; transcript_id "RvY_03769.1"; Scaffold002 rebuild transcript 1083077 1083388 . + . gene_id "RvY_03770"; transcript_id "RvY_03770.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1083077 1083388 . + . gene_id "RvY_03770"; transcript_id "RvY_03770.1"; Scaffold002 rebuild transcript 1087004 1091848 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; annotation "hypothetical protein."; Pfam "[Drf_GBD] Diaphanous GTPase-binding Domain|[FH2] Formin Homology 2 Domain"; similar_genes "SSGP_VOLCA(e-value:4.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 1087004 1087187 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1087258 1087497 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1088083 1088198 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1088419 1088479 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1088602 1088947 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1089254 1089807 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1090098 1090426 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1090496 1090753 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1090830 1091011 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1091081 1091369 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild exon 1091585 1091848 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.1"; Scaffold002 rebuild transcript 1087004 1090465 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; annotation "hypothetical protein."; Pfam "[Drf_GBD] Diaphanous GTPase-binding Domain|[FH2] Formin Homology 2 Domain"; similar_genes "SSGP_VOLCA(e-value:4.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 1087004 1087187 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild exon 1087258 1087497 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild exon 1088083 1088198 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild exon 1088419 1088479 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild exon 1088602 1088947 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild exon 1089254 1089807 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild exon 1090098 1090465 . + . gene_id "RvY_03771"; transcript_id "RvY_03771.2"; Scaffold002 rebuild transcript 1087041 1087487 . - . gene_id "RvY_03772"; transcript_id "RvY_03772.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1087041 1087179 . - . gene_id "RvY_03772"; transcript_id "RvY_03772.1"; Scaffold002 rebuild exon 1087238 1087271 . - . gene_id "RvY_03772"; transcript_id "RvY_03772.1"; Scaffold002 rebuild exon 1087358 1087487 . - . gene_id "RvY_03772"; transcript_id "RvY_03772.1"; Scaffold002 rebuild transcript 1093483 1094340 . - . gene_id "RvY_03773"; transcript_id "RvY_03773.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 1093483 1094340 . - . gene_id "RvY_03773"; transcript_id "RvY_03773.1"; Scaffold002 rebuild transcript 1096607 1098186 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold002 rebuild exon 1096607 1096958 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.1"; Scaffold002 rebuild exon 1097093 1097131 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.1"; Scaffold002 rebuild exon 1097196 1097220 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.1"; Scaffold002 rebuild exon 1097341 1097651 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.1"; Scaffold002 rebuild exon 1098062 1098186 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.1"; Scaffold002 rebuild transcript 1096607 1097701 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.2"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold002 rebuild exon 1096607 1096958 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.2"; Scaffold002 rebuild exon 1097093 1097131 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.2"; Scaffold002 rebuild exon 1097196 1097220 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.2"; Scaffold002 rebuild exon 1097341 1097701 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.2"; Scaffold002 rebuild transcript 1097068 1097701 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.3"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold002 rebuild exon 1097068 1097131 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.3"; Scaffold002 rebuild exon 1097196 1097220 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.3"; Scaffold002 rebuild exon 1097341 1097701 . + . gene_id "RvY_03774"; transcript_id "RvY_03774.3"; Scaffold002 rebuild transcript 1098298 1099641 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1098298 1098300 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild exon 1098364 1098498 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild exon 1098571 1098621 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild exon 1098713 1098886 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild exon 1098950 1099118 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild exon 1099423 1099501 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild exon 1099572 1099641 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.1"; Scaffold002 rebuild transcript 1098298 1098895 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1098298 1098300 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.2"; Scaffold002 rebuild exon 1098364 1098498 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.2"; Scaffold002 rebuild exon 1098571 1098621 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.2"; Scaffold002 rebuild exon 1098713 1098895 . + . gene_id "RvY_03775"; transcript_id "RvY_03775.2"; Scaffold002 rebuild transcript 1100508 1100804 . + . gene_id "RvY_03776"; transcript_id "RvY_03776.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1100508 1100804 . + . gene_id "RvY_03776"; transcript_id "RvY_03776.1"; Scaffold002 rebuild transcript 1102353 1103959 . + . gene_id "RvY_03777"; transcript_id "RvY_03777.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1102353 1102415 . + . gene_id "RvY_03777"; transcript_id "RvY_03777.1"; Scaffold002 rebuild exon 1103873 1103959 . + . gene_id "RvY_03777"; transcript_id "RvY_03777.1"; Scaffold002 rebuild transcript 1104234 1104608 . - . gene_id "RvY_03778"; transcript_id "RvY_03778.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1104234 1104608 . - . gene_id "RvY_03778"; transcript_id "RvY_03778.1"; Scaffold002 rebuild transcript 1109936 1110124 . + . gene_id "RvY_03779"; transcript_id "RvY_03779.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1109936 1110124 . + . gene_id "RvY_03779"; transcript_id "RvY_03779.1"; Scaffold002 rebuild transcript 1110233 1112748 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; gene_name "aslA"; annotation "arylsulfatase [EC:3.1.6.1]"; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.1|EC3.1.6.12"; KO "K01130"; similar_genes "ARSB_RAT(e-value:2.7e-11;bit-score:67.0)"; Scaffold002 rebuild exon 1110233 1110607 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1110691 1110753 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1110817 1110955 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1111014 1111124 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1111193 1111887 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1111944 1111983 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1112048 1112192 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1112254 1112425 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1112483 1112604 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild exon 1112661 1112748 . + . gene_id "RvY_03780"; transcript_id "RvY_03780.1"; Scaffold002 rebuild transcript 1115342 1115855 . - . gene_id "RvY_03781"; transcript_id "RvY_03781.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1115342 1115370 . - . gene_id "RvY_03781"; transcript_id "RvY_03781.1"; Scaffold002 rebuild exon 1115552 1115855 . - . gene_id "RvY_03781"; transcript_id "RvY_03781.1"; Scaffold002 rebuild transcript 1116935 1119468 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "TRPA1_DROME(e-value:1.2e-09;bit-score:61.0)"; Scaffold002 rebuild exon 1116935 1117120 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild exon 1117199 1117355 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild exon 1117889 1118317 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild exon 1118552 1118691 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild exon 1118774 1118894 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild exon 1118950 1119227 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild exon 1119304 1119468 . + . gene_id "RvY_03782"; transcript_id "RvY_03782.1"; Scaffold002 rebuild transcript 1119746 1122988 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; gene_name "(1,2)ANK(4)trp"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.(4)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; similar_genes "TRPA1_DROME(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 1119746 1119771 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1119890 1119942 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1120008 1120069 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1120147 1120313 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1120378 1120462 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1120528 1120587 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1120656 1120766 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1120985 1121055 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1121123 1121447 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1121711 1121892 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1121961 1122120 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1122336 1122554 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1122618 1122800 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild exon 1122878 1122988 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.1"; Scaffold002 rebuild transcript 1119746 1122809 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; gene_name "(1,2)ANK(4)trp"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.(4)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; similar_genes "TRPA1_DROME(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 1119746 1119771 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1119890 1119942 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1120008 1120069 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1120147 1120313 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1120378 1120462 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1120528 1120587 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1120656 1120766 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1120985 1121055 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1121123 1121447 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1121711 1121892 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1121961 1122120 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1122336 1122554 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild exon 1122618 1122809 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.2"; Scaffold002 rebuild transcript 1121241 1123315 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; gene_name "(1,2)ANK(4)trp"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.(4)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; similar_genes "TRPA1_DROME(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 1121241 1121447 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild exon 1121711 1121892 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild exon 1121961 1122120 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild exon 1122336 1122554 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild exon 1122618 1122800 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild exon 1122878 1122984 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild exon 1123051 1123315 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.3"; Scaffold002 rebuild transcript 1120988 1122988 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; gene_name "(1,2)ANK(4)trp"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.(4)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; similar_genes "TRPA1_DROME(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 1120988 1121055 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild exon 1121123 1121447 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild exon 1121711 1121892 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild exon 1121961 1122120 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild exon 1122336 1122554 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild exon 1122618 1122800 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild exon 1122878 1122988 . + . gene_id "RvY_03783"; transcript_id "RvY_03783.4"; Scaffold002 rebuild transcript 1124238 1126211 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; annotation "hypothetical protein."; Pfam "[ERGIC_N] Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)|[COPIIcoated_ERV] Endoplasmic reticulum vesicle transporter"; similar_genes "ERGI1_DANRE(e-value:5.6e-20;bit-score:95.0)"; Scaffold002 rebuild exon 1124238 1124333 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1124399 1124562 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1124626 1124676 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1124751 1124811 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1125111 1125215 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1125302 1125400 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1125469 1125488 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1125803 1125894 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1125973 1126107 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild exon 1126192 1126211 . - . gene_id "RvY_03784"; transcript_id "RvY_03784.1"; Scaffold002 rebuild transcript 1126880 1133710 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; gene_name "SMC1"; annotation "putative Structural maintenance of chromosomes protein 1A"; Pfam "[SMC_hinge] SMC proteins Flexible Hinge Domain|[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[AAA_21] AAA domain"; KO "K06636"; similar_genes "SMC1A_XENLA(e-value:1.8e-33;bit-score:140.0)"; Scaffold002 rebuild exon 1126880 1127009 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1127068 1127144 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1127204 1127356 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1127596 1127913 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1127976 1128188 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1128267 1128352 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1128427 1128475 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1128542 1128658 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1128777 1128991 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1129293 1129509 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1129683 1129894 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1130077 1130304 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1130487 1130682 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1130753 1130818 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1130881 1131014 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1131244 1131371 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1131468 1131553 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1131617 1131835 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1132109 1132285 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1132387 1132668 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1132923 1133110 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1133397 1133568 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild exon 1133639 1133710 . + . gene_id "RvY_03785"; transcript_id "RvY_03785.1"; Scaffold002 rebuild transcript 1142882 1146758 . - . gene_id "RvY_03786"; transcript_id "RvY_03786.1"; gene_name "NKX2-4"; annotation "homeobox protein Nkx-2.4"; Pfam "[Homeobox]"; KO "K09344"; similar_genes "HM24_CAEBR(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 1142882 1143394 . - . gene_id "RvY_03786"; transcript_id "RvY_03786.1"; Scaffold002 rebuild exon 1143807 1144063 . - . gene_id "RvY_03786"; transcript_id "RvY_03786.1"; Scaffold002 rebuild exon 1146494 1146758 . - . gene_id "RvY_03786"; transcript_id "RvY_03786.1"; Scaffold002 rebuild transcript 1147261 1147581 . - . gene_id "RvY_03787"; transcript_id "RvY_03787.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1147261 1147581 . - . gene_id "RvY_03787"; transcript_id "RvY_03787.1"; Scaffold002 rebuild transcript 1149391 1155665 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family|[Ion_trans] Ion transport protein"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; KO "(1)K14726"; Scaffold002 rebuild exon 1149391 1149919 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1150264 1150566 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1150726 1150785 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1150910 1150996 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1151061 1151255 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1151528 1151888 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1151945 1152216 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1152756 1153525 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1153791 1154021 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1154090 1154440 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1154682 1155125 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1155189 1155317 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild exon 1155390 1155665 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.1"; Scaffold002 rebuild transcript 1149391 1154782 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family|[Ion_trans] Ion transport protein"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; KO "(1)K14726"; Scaffold002 rebuild exon 1149391 1149919 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1150264 1150566 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1150726 1150785 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1150910 1150996 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1151061 1151255 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1151528 1151888 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1151945 1152216 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1152756 1153525 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1153791 1154021 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1154090 1154402 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild exon 1154682 1154782 . + . gene_id "RvY_03788"; transcript_id "RvY_03788.2"; Scaffold002 rebuild transcript 1155752 1156204 . + . gene_id "RvY_03789"; transcript_id "RvY_03789.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1155752 1156204 . + . gene_id "RvY_03789"; transcript_id "RvY_03789.1"; Scaffold002 rebuild transcript 1157609 1159024 . + . gene_id "RvY_03790"; transcript_id "RvY_03790.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 1157609 1159024 . + . gene_id "RvY_03790"; transcript_id "RvY_03790.1"; Scaffold002 rebuild transcript 1159021 1159380 . - . gene_id "RvY_03791"; transcript_id "RvY_03791.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1159021 1159380 . - . gene_id "RvY_03791"; transcript_id "RvY_03791.1"; Scaffold002 rebuild transcript 1159570 1160031 . + . gene_id "RvY_03792"; transcript_id "RvY_03792.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1159570 1160031 . + . gene_id "RvY_03792"; transcript_id "RvY_03792.1"; Scaffold002 rebuild transcript 1160324 1160750 . - . gene_id "RvY_03793"; transcript_id "RvY_03793.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1160324 1160353 . - . gene_id "RvY_03793"; transcript_id "RvY_03793.1"; Scaffold002 rebuild exon 1160439 1160750 . - . gene_id "RvY_03793"; transcript_id "RvY_03793.1"; Scaffold002 rebuild transcript 1164979 1165955 . + . gene_id "RvY_03794"; transcript_id "RvY_03794.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1164979 1165075 . + . gene_id "RvY_03794"; transcript_id "RvY_03794.1"; Scaffold002 rebuild exon 1165672 1165955 . + . gene_id "RvY_03794"; transcript_id "RvY_03794.1"; Scaffold002 rebuild transcript 1169009 1169383 . + . gene_id "RvY_03795"; transcript_id "RvY_03795.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1169009 1169383 . + . gene_id "RvY_03795"; transcript_id "RvY_03795.1"; Scaffold002 rebuild transcript 1169783 1170342 . + . gene_id "RvY_03796"; transcript_id "RvY_03796.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1169783 1170209 . + . gene_id "RvY_03796"; transcript_id "RvY_03796.1"; Scaffold002 rebuild exon 1170272 1170342 . + . gene_id "RvY_03796"; transcript_id "RvY_03796.1"; Scaffold002 rebuild transcript 1174781 1174975 . - . gene_id "RvY_03797"; transcript_id "RvY_03797.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1174781 1174975 . - . gene_id "RvY_03797"; transcript_id "RvY_03797.1"; Scaffold002 rebuild transcript 1178837 1179028 . + . gene_id "RvY_03798"; transcript_id "RvY_03798.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1178837 1179028 . + . gene_id "RvY_03798"; transcript_id "RvY_03798.1"; Scaffold002 rebuild transcript 1180489 1181553 . + . gene_id "RvY_03799"; transcript_id "RvY_03799.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 1180489 1181553 . + . gene_id "RvY_03799"; transcript_id "RvY_03799.1"; Scaffold002 rebuild transcript 1182619 1182876 . + . gene_id "RvY_03800"; transcript_id "RvY_03800.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1182619 1182876 . + . gene_id "RvY_03800"; transcript_id "RvY_03800.1"; Scaffold002 rebuild transcript 1184107 1184358 . + . gene_id "RvY_03801"; transcript_id "RvY_03801.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1184107 1184358 . + . gene_id "RvY_03801"; transcript_id "RvY_03801.1"; Scaffold002 rebuild transcript 1186734 1187783 . - . gene_id "RvY_03802"; transcript_id "RvY_03802.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1186734 1187783 . - . gene_id "RvY_03802"; transcript_id "RvY_03802.1"; Scaffold002 rebuild transcript 1187790 1188328 . - . gene_id "RvY_03803"; transcript_id "RvY_03803.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1187790 1188081 . - . gene_id "RvY_03803"; transcript_id "RvY_03803.1"; Scaffold002 rebuild exon 1188243 1188328 . - . gene_id "RvY_03803"; transcript_id "RvY_03803.1"; Scaffold002 rebuild transcript 1190603 1191331 . + . gene_id "RvY_03804"; transcript_id "RvY_03804.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1190603 1190710 . + . gene_id "RvY_03804"; transcript_id "RvY_03804.1"; Scaffold002 rebuild exon 1190793 1190853 . + . gene_id "RvY_03804"; transcript_id "RvY_03804.1"; Scaffold002 rebuild exon 1190939 1191109 . + . gene_id "RvY_03804"; transcript_id "RvY_03804.1"; Scaffold002 rebuild exon 1191178 1191225 . + . gene_id "RvY_03804"; transcript_id "RvY_03804.1"; Scaffold002 rebuild exon 1191294 1191331 . + . gene_id "RvY_03804"; transcript_id "RvY_03804.1"; Scaffold002 rebuild transcript 1191396 1192001 . + . gene_id "RvY_03805"; transcript_id "RvY_03805.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1191396 1191593 . + . gene_id "RvY_03805"; transcript_id "RvY_03805.1"; Scaffold002 rebuild exon 1191897 1192001 . + . gene_id "RvY_03805"; transcript_id "RvY_03805.1"; Scaffold002 rebuild transcript 1192024 1195314 . - . gene_id "RvY_03806"; transcript_id "RvY_03806.1"; annotation "hypothetical protein."; Pfam "[MIP-T3] Microtubule-binding protein MIP-T3"; Scaffold002 rebuild exon 1192024 1192174 . - . gene_id "RvY_03806"; transcript_id "RvY_03806.1"; Scaffold002 rebuild exon 1193090 1193304 . - . gene_id "RvY_03806"; transcript_id "RvY_03806.1"; Scaffold002 rebuild exon 1193371 1193453 . - . gene_id "RvY_03806"; transcript_id "RvY_03806.1"; Scaffold002 rebuild exon 1193706 1194540 . - . gene_id "RvY_03806"; transcript_id "RvY_03806.1"; Scaffold002 rebuild exon 1195081 1195314 . - . gene_id "RvY_03806"; transcript_id "RvY_03806.1"; Scaffold002 rebuild transcript 1195782 1197254 . - . gene_id "RvY_03807"; transcript_id "RvY_03807.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1195782 1196499 . - . gene_id "RvY_03807"; transcript_id "RvY_03807.1"; Scaffold002 rebuild exon 1196675 1196878 . - . gene_id "RvY_03807"; transcript_id "RvY_03807.1"; Scaffold002 rebuild exon 1196938 1197254 . - . gene_id "RvY_03807"; transcript_id "RvY_03807.1"; Scaffold002 rebuild transcript 1197664 1199114 . - . gene_id "RvY_03808"; transcript_id "RvY_03808.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1197664 1198228 . - . gene_id "RvY_03808"; transcript_id "RvY_03808.1"; Scaffold002 rebuild exon 1198510 1198710 . - . gene_id "RvY_03808"; transcript_id "RvY_03808.1"; Scaffold002 rebuild exon 1198786 1199114 . - . gene_id "RvY_03808"; transcript_id "RvY_03808.1"; Scaffold002 rebuild transcript 1199805 1203270 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; gene_name "(1)K01081(2)HAD-IG-Ncltidse"; annotation "(1)Cytosolic purine 5'-nucleotidase(2)hypothetical protein."; Pfam "[5_nucleotid] 5' nucleotidase family"; CDD "(2)HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model."; EC "(1)EC3.1.3.5"; KO "(1)K01081"; similar_genes "(1)5NTC_HUMAN(e-value:4.2e-86;bit-score:315.0)(2)NT5D4_HUMAN(e-value:6.6e-23;bit-score:105.0)"; Scaffold002 rebuild exon 1199805 1200032 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1200361 1200787 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1200936 1201225 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1201497 1201634 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1201734 1201874 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1202124 1202217 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1202295 1202441 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1202495 1202590 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1202661 1202778 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1202994 1203067 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild exon 1203131 1203270 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.1"; Scaffold002 rebuild transcript 1201476 1203461 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; gene_name "(1)K01081(2)HAD-IG-Ncltidse"; annotation "(1)Cytosolic purine 5'-nucleotidase(2)hypothetical protein."; Pfam "[5_nucleotid] 5' nucleotidase family"; CDD "(2)HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model."; EC "(1)EC3.1.3.5"; KO "(1)K01081"; similar_genes "(1)5NTC_HUMAN(e-value:4.2e-86;bit-score:315.0)(2)NT5D4_HUMAN(e-value:6.6e-23;bit-score:105.0)"; Scaffold002 rebuild exon 1201476 1201634 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1201734 1201874 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1202124 1202217 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1202295 1202441 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1202495 1202590 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1202661 1202778 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1202994 1203067 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1203131 1203334 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild exon 1203400 1203461 . - . gene_id "RvY_03809"; transcript_id "RvY_03809.2"; Scaffold002 rebuild transcript 1205983 1206856 . + . gene_id "RvY_03810"; transcript_id "RvY_03810.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1205983 1206190 . + . gene_id "RvY_03810"; transcript_id "RvY_03810.1"; Scaffold002 rebuild exon 1206339 1206856 . + . gene_id "RvY_03810"; transcript_id "RvY_03810.1"; Scaffold002 rebuild transcript 1208018 1208372 . + . gene_id "RvY_03811"; transcript_id "RvY_03811.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1208018 1208166 . + . gene_id "RvY_03811"; transcript_id "RvY_03811.1"; Scaffold002 rebuild exon 1208240 1208372 . + . gene_id "RvY_03811"; transcript_id "RvY_03811.1"; Scaffold002 rebuild transcript 1209592 1213377 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; gene_name "PPP2R2"; annotation "putative Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]"; KO "K04354"; similar_genes "2ABA_RABIT(e-value:1.3e-44;bit-score:177.0)"; Scaffold002 rebuild exon 1209592 1209610 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1210066 1210179 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1210297 1210394 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1211143 1211305 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1211427 1211717 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1211970 1212134 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1212535 1212796 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild exon 1213077 1213377 . + . gene_id "RvY_03812"; transcript_id "RvY_03812.1"; Scaffold002 rebuild transcript 1214902 1219925 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; gene_name "HepA"; annotation "putative Putative DNA helicase INO80"; Pfam "[HDA2-3] Class II histone deacetylase complex subunits 2 and 3|[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K14439"; similar_genes "INO80_PHANO(e-value:2.1e-32;bit-score:137.0)"; Scaffold002 rebuild exon 1214902 1215020 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1215365 1215465 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1215536 1215641 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1215709 1215850 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1216150 1216203 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1216289 1216381 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1216455 1216553 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1216685 1217026 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1217421 1217525 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1217605 1217796 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1217850 1218162 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1218493 1218686 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1218748 1218962 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1219027 1219258 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild exon 1219542 1219925 . - . gene_id "RvY_03813"; transcript_id "RvY_03813.1"; Scaffold002 rebuild transcript 1221120 1221603 . - . gene_id "RvY_03814"; transcript_id "RvY_03814.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1221120 1221352 . - . gene_id "RvY_03814"; transcript_id "RvY_03814.1"; Scaffold002 rebuild exon 1221528 1221603 . - . gene_id "RvY_03814"; transcript_id "RvY_03814.1"; Scaffold002 rebuild transcript 1222452 1223744 . + . gene_id "RvY_03815"; transcript_id "RvY_03815.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1222452 1222585 . + . gene_id "RvY_03815"; transcript_id "RvY_03815.1"; Scaffold002 rebuild exon 1223073 1223214 . + . gene_id "RvY_03815"; transcript_id "RvY_03815.1"; Scaffold002 rebuild exon 1223519 1223618 . + . gene_id "RvY_03815"; transcript_id "RvY_03815.1"; Scaffold002 rebuild exon 1223692 1223744 . + . gene_id "RvY_03815"; transcript_id "RvY_03815.1"; Scaffold002 rebuild transcript 1223850 1224890 . - . gene_id "RvY_03816"; transcript_id "RvY_03816.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 1223850 1224302 . - . gene_id "RvY_03816"; transcript_id "RvY_03816.1"; Scaffold002 rebuild exon 1224450 1224890 . - . gene_id "RvY_03816"; transcript_id "RvY_03816.1"; Scaffold002 rebuild transcript 1225517 1225750 . + . gene_id "RvY_03817"; transcript_id "RvY_03817.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1225517 1225750 . + . gene_id "RvY_03817"; transcript_id "RvY_03817.1"; Scaffold002 rebuild transcript 1226906 1237676 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; gene_name "COL4A"; annotation "Collagen alpha-5(IV) chain"; Pfam "[Collagen] Collagen triple helix repeat (20 copies)|[C4] C-terminal tandem repeated domain in type 4 procollagen"; KO "K06237"; similar_genes "CO4A5_CANFA(e-value:1.6e-85;bit-score:313.0)"; Scaffold002 rebuild exon 1226906 1227028 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1227521 1227580 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1227680 1227761 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1227847 1227944 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1228015 1228077 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1228160 1228240 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1228314 1228391 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1228460 1228522 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1228745 1229080 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1229343 1229703 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1229968 1230449 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1231577 1231777 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1231848 1232019 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1232261 1232568 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1232837 1233278 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1233474 1233725 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1233951 1234136 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1234222 1234355 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1234427 1234733 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1235016 1235120 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1235197 1235328 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1235528 1235658 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1235724 1235991 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1236066 1236173 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1236456 1236668 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1236735 1237027 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild exon 1237359 1237676 . + . gene_id "RvY_03818"; transcript_id "RvY_03818.1"; Scaffold002 rebuild transcript 1238106 1239492 . - . gene_id "RvY_03819"; transcript_id "RvY_03819.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1238106 1238475 . - . gene_id "RvY_03819"; transcript_id "RvY_03819.1"; Scaffold002 rebuild exon 1238627 1238905 . - . gene_id "RvY_03819"; transcript_id "RvY_03819.1"; Scaffold002 rebuild exon 1239080 1239492 . - . gene_id "RvY_03819"; transcript_id "RvY_03819.1"; Scaffold002 rebuild transcript 1240697 1243173 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.1"; gene_name "(1)Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1240697 1241600 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.1"; Scaffold002 rebuild exon 1241866 1242559 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.1"; Scaffold002 rebuild exon 1242663 1243173 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.1"; Scaffold002 rebuild transcript 1240697 1242569 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.2"; gene_name "(1)Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1240697 1241600 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.2"; Scaffold002 rebuild exon 1241866 1242569 . + . gene_id "RvY_03820"; transcript_id "RvY_03820.2"; Scaffold002 rebuild transcript 1246225 1247398 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1246225 1247142 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.1"; Scaffold002 rebuild exon 1247378 1247398 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.1"; Scaffold002 rebuild transcript 1245322 1247398 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1245322 1245436 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.2"; Scaffold002 rebuild exon 1245804 1246066 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.2"; Scaffold002 rebuild exon 1246618 1247142 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.2"; Scaffold002 rebuild exon 1247378 1247398 . - . gene_id "RvY_03821"; transcript_id "RvY_03821.2"; Scaffold002 rebuild transcript 1247583 1247885 . + . gene_id "RvY_03822"; transcript_id "RvY_03822.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1247583 1247885 . + . gene_id "RvY_03822"; transcript_id "RvY_03822.1"; Scaffold002 rebuild transcript 1254122 1254325 . - . gene_id "RvY_03823"; transcript_id "RvY_03823.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1254122 1254325 . - . gene_id "RvY_03823"; transcript_id "RvY_03823.1"; Scaffold002 rebuild transcript 1257500 1258108 . + . gene_id "RvY_03824"; transcript_id "RvY_03824.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1257500 1257719 . + . gene_id "RvY_03824"; transcript_id "RvY_03824.1"; Scaffold002 rebuild exon 1257897 1258108 . + . gene_id "RvY_03824"; transcript_id "RvY_03824.1"; Scaffold002 rebuild transcript 1258115 1259271 . + . gene_id "RvY_03825"; transcript_id "RvY_03825.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1258115 1258336 . + . gene_id "RvY_03825"; transcript_id "RvY_03825.1"; Scaffold002 rebuild exon 1258509 1258718 . + . gene_id "RvY_03825"; transcript_id "RvY_03825.1"; Scaffold002 rebuild exon 1258786 1259271 . + . gene_id "RvY_03825"; transcript_id "RvY_03825.1"; Scaffold002 rebuild transcript 1265111 1266265 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1265111 1265357 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.1"; Scaffold002 rebuild exon 1265458 1265630 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.1"; Scaffold002 rebuild exon 1266053 1266265 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.1"; Scaffold002 rebuild transcript 1265111 1265732 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1265111 1265357 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.2"; Scaffold002 rebuild exon 1265458 1265732 . + . gene_id "RvY_03827"; transcript_id "RvY_03827.2"; Scaffold002 rebuild transcript 1268015 1268329 . + . gene_id "RvY_03828"; transcript_id "RvY_03828.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1268015 1268329 . + . gene_id "RvY_03828"; transcript_id "RvY_03828.1"; Scaffold002 rebuild transcript 1268784 1269086 . - . gene_id "RvY_03829"; transcript_id "RvY_03829.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1268784 1269086 . - . gene_id "RvY_03829"; transcript_id "RvY_03829.1"; Scaffold002 rebuild transcript 1270665 1270949 . + . gene_id "RvY_03830"; transcript_id "RvY_03830.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1270665 1270949 . + . gene_id "RvY_03830"; transcript_id "RvY_03830.1"; Scaffold002 rebuild transcript 1271611 1275592 . - . gene_id "RvY_03831"; transcript_id "RvY_03831.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1271611 1271913 . - . gene_id "RvY_03831"; transcript_id "RvY_03831.1"; Scaffold002 rebuild exon 1272442 1272787 . - . gene_id "RvY_03831"; transcript_id "RvY_03831.1"; Scaffold002 rebuild exon 1275063 1275378 . - . gene_id "RvY_03831"; transcript_id "RvY_03831.1"; Scaffold002 rebuild exon 1275538 1275592 . - . gene_id "RvY_03831"; transcript_id "RvY_03831.1"; Scaffold002 rebuild transcript 1273470 1273631 . + . gene_id "RvY_03832"; transcript_id "RvY_03832.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1273470 1273631 . + . gene_id "RvY_03832"; transcript_id "RvY_03832.1"; Scaffold002 rebuild transcript 1275177 1275386 . + . gene_id "RvY_03833"; transcript_id "RvY_03833.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1275177 1275386 . + . gene_id "RvY_03833"; transcript_id "RvY_03833.1"; Scaffold002 rebuild transcript 1280676 1281969 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 1280676 1280859 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; Scaffold002 rebuild exon 1280936 1281080 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; Scaffold002 rebuild exon 1281163 1281336 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; Scaffold002 rebuild exon 1281405 1281445 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; Scaffold002 rebuild exon 1281514 1281765 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; Scaffold002 rebuild exon 1281854 1281969 . + . gene_id "RvY_03834"; transcript_id "RvY_03834.1"; Scaffold002 rebuild transcript 1283217 1284800 . + . gene_id "RvY_03835"; transcript_id "RvY_03835.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 1283217 1283346 . + . gene_id "RvY_03835"; transcript_id "RvY_03835.1"; Scaffold002 rebuild exon 1283415 1283559 . + . gene_id "RvY_03835"; transcript_id "RvY_03835.1"; Scaffold002 rebuild exon 1283835 1284283 . + . gene_id "RvY_03835"; transcript_id "RvY_03835.1"; Scaffold002 rebuild exon 1284352 1284800 . + . gene_id "RvY_03835"; transcript_id "RvY_03835.1"; Scaffold002 rebuild transcript 1286260 1286502 . + . gene_id "RvY_03836"; transcript_id "RvY_03836.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1286260 1286502 . + . gene_id "RvY_03836"; transcript_id "RvY_03836.1"; Scaffold002 rebuild transcript 1287386 1289219 . + . gene_id "RvY_03837"; transcript_id "RvY_03837.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold002 rebuild exon 1287386 1287454 . + . gene_id "RvY_03837"; transcript_id "RvY_03837.1"; Scaffold002 rebuild exon 1288168 1288348 . + . gene_id "RvY_03837"; transcript_id "RvY_03837.1"; Scaffold002 rebuild exon 1288573 1289219 . + . gene_id "RvY_03837"; transcript_id "RvY_03837.1"; Scaffold002 rebuild transcript 1292245 1293267 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1292245 1292313 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.1"; Scaffold002 rebuild exon 1292425 1292667 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.1"; Scaffold002 rebuild exon 1292751 1292913 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.1"; Scaffold002 rebuild exon 1293002 1293053 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.1"; Scaffold002 rebuild exon 1293174 1293267 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.1"; Scaffold002 rebuild transcript 1292604 1293535 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1292604 1292913 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.2"; Scaffold002 rebuild exon 1293002 1293053 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.2"; Scaffold002 rebuild exon 1293174 1293287 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.2"; Scaffold002 rebuild exon 1293463 1293535 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.2"; Scaffold002 rebuild transcript 1292245 1292906 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1292245 1292313 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.3"; Scaffold002 rebuild exon 1292425 1292667 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.3"; Scaffold002 rebuild exon 1292751 1292906 . - . gene_id "RvY_03838"; transcript_id "RvY_03838.3"; Scaffold002 rebuild transcript 1296061 1297781 . - . gene_id "RvY_03839"; transcript_id "RvY_03839.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold002 rebuild exon 1296061 1296221 . - . gene_id "RvY_03839"; transcript_id "RvY_03839.1"; Scaffold002 rebuild exon 1296575 1297781 . - . gene_id "RvY_03839"; transcript_id "RvY_03839.1"; Scaffold002 rebuild transcript 1301430 1306256 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; annotation "hypothetical protein."; Pfam "[Ammonium_transp] Ammonium Transporter Family"; Scaffold002 rebuild exon 1301430 1301751 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1303480 1303543 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1303714 1303836 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1304182 1304650 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1305116 1305253 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1305337 1305470 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1305776 1305957 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild exon 1306021 1306256 . + . gene_id "RvY_03840"; transcript_id "RvY_03840.1"; Scaffold002 rebuild transcript 1307513 1307806 . + . gene_id "RvY_03841"; transcript_id "RvY_03841.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 1307513 1307806 . + . gene_id "RvY_03841"; transcript_id "RvY_03841.1"; Scaffold002 rebuild transcript 1307829 1308203 . + . gene_id "RvY_03842"; transcript_id "RvY_03842.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1307829 1308203 . + . gene_id "RvY_03842"; transcript_id "RvY_03842.1"; Scaffold002 rebuild transcript 1308581 1308814 . - . gene_id "RvY_03843"; transcript_id "RvY_03843.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1308581 1308814 . - . gene_id "RvY_03843"; transcript_id "RvY_03843.1"; Scaffold002 rebuild transcript 1309564 1309866 . + . gene_id "RvY_03844"; transcript_id "RvY_03844.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1309564 1309866 . + . gene_id "RvY_03844"; transcript_id "RvY_03844.1"; Scaffold002 rebuild transcript 1312532 1313428 . - . gene_id "RvY_03845"; transcript_id "RvY_03845.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1312532 1312997 . - . gene_id "RvY_03845"; transcript_id "RvY_03845.1"; Scaffold002 rebuild exon 1313076 1313428 . - . gene_id "RvY_03845"; transcript_id "RvY_03845.1"; Scaffold002 rebuild transcript 1313567 1314046 . - . gene_id "RvY_03846"; transcript_id "RvY_03846.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 1313567 1314046 . - . gene_id "RvY_03846"; transcript_id "RvY_03846.1"; Scaffold002 rebuild transcript 1316588 1316902 . + . gene_id "RvY_03847"; transcript_id "RvY_03847.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1316588 1316902 . + . gene_id "RvY_03847"; transcript_id "RvY_03847.1"; Scaffold002 rebuild transcript 1317712 1318496 . + . gene_id "RvY_03848"; transcript_id "RvY_03848.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1317712 1317963 . + . gene_id "RvY_03848"; transcript_id "RvY_03848.1"; Scaffold002 rebuild exon 1318248 1318496 . + . gene_id "RvY_03848"; transcript_id "RvY_03848.1"; Scaffold002 rebuild transcript 1323409 1324504 . - . gene_id "RvY_03849"; transcript_id "RvY_03849.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1323409 1323677 . - . gene_id "RvY_03849"; transcript_id "RvY_03849.1"; Scaffold002 rebuild exon 1323877 1324504 . - . gene_id "RvY_03849"; transcript_id "RvY_03849.1"; Scaffold002 rebuild transcript 1323848 1324504 . - . gene_id "RvY_03849"; transcript_id "RvY_03849.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1323848 1324504 . - . gene_id "RvY_03849"; transcript_id "RvY_03849.4"; Scaffold002 rebuild transcript 1324565 1325365 . - . gene_id "RvY_03850"; transcript_id "RvY_03850.1"; gene_name "(1)HemY"; annotation "hypothetical protein."; Pfam "[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "(1)Protoporphyrinogen oxidase [Coenzyme metabolism]"; Scaffold002 rebuild exon 1324565 1324700 . - . gene_id "RvY_03850"; transcript_id "RvY_03850.1"; Scaffold002 rebuild exon 1324836 1325365 . - . gene_id "RvY_03850"; transcript_id "RvY_03850.1"; Scaffold002 rebuild transcript 1325055 1325420 . - . gene_id "RvY_03850"; transcript_id "RvY_03850.2"; gene_name "(1)HemY"; annotation "hypothetical protein."; Pfam "[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "(1)Protoporphyrinogen oxidase [Coenzyme metabolism]"; Scaffold002 rebuild exon 1325055 1325420 . - . gene_id "RvY_03850"; transcript_id "RvY_03850.2"; Scaffold002 rebuild transcript 1325999 1326301 . - . gene_id "RvY_03851"; transcript_id "RvY_03851.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1325999 1326301 . - . gene_id "RvY_03851"; transcript_id "RvY_03851.1"; Scaffold002 rebuild transcript 1326825 1327921 . - . gene_id "RvY_03852"; transcript_id "RvY_03852.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1326825 1327363 . - . gene_id "RvY_03852"; transcript_id "RvY_03852.1"; Scaffold002 rebuild exon 1327558 1327921 . - . gene_id "RvY_03852"; transcript_id "RvY_03852.1"; Scaffold002 rebuild transcript 1328409 1328774 . - . gene_id "RvY_03853"; transcript_id "RvY_03853.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1328409 1328774 . - . gene_id "RvY_03853"; transcript_id "RvY_03853.1"; Scaffold002 rebuild transcript 1329199 1329567 . + . gene_id "RvY_03854"; transcript_id "RvY_03854.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1329199 1329567 . + . gene_id "RvY_03854"; transcript_id "RvY_03854.1"; Scaffold002 rebuild transcript 1329211 1330141 . - . gene_id "RvY_03855"; transcript_id "RvY_03855.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1329211 1329602 . - . gene_id "RvY_03855"; transcript_id "RvY_03855.1"; Scaffold002 rebuild exon 1329853 1330141 . - . gene_id "RvY_03855"; transcript_id "RvY_03855.1"; Scaffold002 rebuild transcript 1330714 1331228 . - . gene_id "RvY_03856"; transcript_id "RvY_03856.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1330714 1330889 . - . gene_id "RvY_03856"; transcript_id "RvY_03856.1"; Scaffold002 rebuild exon 1330955 1331228 . - . gene_id "RvY_03856"; transcript_id "RvY_03856.1"; Scaffold002 rebuild transcript 1331642 1334368 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold002 rebuild exon 1331642 1331833 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; Scaffold002 rebuild exon 1331907 1332272 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; Scaffold002 rebuild exon 1332506 1332865 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; Scaffold002 rebuild exon 1332949 1333415 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; Scaffold002 rebuild exon 1333777 1333888 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; Scaffold002 rebuild exon 1333964 1334368 . - . gene_id "RvY_03857"; transcript_id "RvY_03857.1"; Scaffold002 rebuild transcript 1335683 1338110 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold002 rebuild exon 1335683 1335776 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1335872 1335935 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1336001 1336226 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1336289 1336753 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1336823 1336883 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1336943 1337259 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1337469 1337825 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild exon 1337892 1338110 . + . gene_id "RvY_03858"; transcript_id "RvY_03858.1"; Scaffold002 rebuild transcript 1338247 1338687 . - . gene_id "RvY_03859"; transcript_id "RvY_03859.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1338247 1338503 . - . gene_id "RvY_03859"; transcript_id "RvY_03859.1"; Scaffold002 rebuild exon 1338588 1338687 . - . gene_id "RvY_03859"; transcript_id "RvY_03859.1"; Scaffold002 rebuild transcript 1339459 1342157 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; gene_name "SCPEP1"; annotation "putative Retinoid-inducible serine carboxypeptidase"; Pfam "[Peptidase_S10] Serine carboxypeptidase"; EC "EC3.4.16.-"; KO "K09646"; similar_genes "RISC_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 1339459 1339760 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1339909 1339971 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1340058 1340171 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1340239 1340350 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1340864 1340992 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1341091 1341152 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1341217 1341340 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1341412 1341657 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1341777 1341851 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1341949 1342013 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild exon 1342088 1342157 . - . gene_id "RvY_03860"; transcript_id "RvY_03860.1"; Scaffold002 rebuild transcript 1342571 1343799 . + . gene_id "RvY_03861"; transcript_id "RvY_03861.1"; gene_name "bkdA2"; annotation "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial"; Pfam "[Transket_pyr] Transketolase, pyrimidine binding domain|[Transketolase_C] Transketolase, C-terminal domain"; CDD "3-methyl-2-oxobutanate dehydrogenase; Provisional"; EC "EC1.2.4.4"; KO "K00167"; similar_genes "ODBB_DICDI(e-value:9.5e-122;bit-score:434.0)"; Scaffold002 rebuild exon 1342571 1343217 . + . gene_id "RvY_03861"; transcript_id "RvY_03861.1"; Scaffold002 rebuild exon 1343355 1343799 . + . gene_id "RvY_03861"; transcript_id "RvY_03861.1"; Scaffold002 rebuild transcript 1345150 1348236 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; gene_name "2A1904"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-H2C2_5] C2H2-type zinc-finger domain|[zf-C2H2_4] C2H2-type zinc finger"; CDD "K+-dependent Na+/Ca+ exchanger."; similar_genes "TYY2_HUMAN(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 1345150 1345240 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1345309 1345368 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1345430 1345519 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1345583 1345717 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1345802 1345891 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1346102 1346191 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1346265 1346369 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1346452 1346541 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1346725 1346904 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1347008 1347058 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1347194 1347535 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1347757 1348033 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild exon 1348179 1348236 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.1"; Scaffold002 rebuild transcript 1345150 1348058 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; gene_name "2A1904"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-H2C2_5] C2H2-type zinc-finger domain|[zf-C2H2_4] C2H2-type zinc finger"; CDD "K+-dependent Na+/Ca+ exchanger."; similar_genes "TYY2_HUMAN(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 1345150 1345240 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1345309 1345368 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1345430 1345519 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1345583 1345717 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1345802 1345891 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1346102 1346191 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1346265 1346369 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1346452 1346541 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1346725 1346904 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1347008 1347058 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1347194 1347535 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild exon 1347757 1348058 . + . gene_id "RvY_03862"; transcript_id "RvY_03862.2"; Scaffold002 rebuild transcript 1348255 1348599 . + . gene_id "RvY_03863"; transcript_id "RvY_03863.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1348255 1348599 . + . gene_id "RvY_03863"; transcript_id "RvY_03863.1"; Scaffold002 rebuild transcript 1353310 1356847 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; gene_name "(1)KRAB(2)COG5048"; annotation "(1)KRAB domain-containing zinc finger protein(2)hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger|(1)[zf-H2C2_5] C2H2-type zinc-finger domain"; CDD "FOG: Zn-finger [General function prediction only]"; KO "(1)K09228"; similar_genes "(1)KLF15_MOUSE(e-value:5.2e-10;bit-score:62.0)"; Scaffold002 rebuild exon 1353310 1353326 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1353458 1353786 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1353846 1353905 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1353978 1354067 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1354137 1354226 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1354314 1354403 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1354482 1354571 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1354652 1354741 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1354821 1354910 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1355165 1355410 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild exon 1356255 1356847 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.1"; Scaffold002 rebuild transcript 1353310 1355230 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; gene_name "(1)KRAB(2)COG5048"; annotation "(1)KRAB domain-containing zinc finger protein(2)hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger|(1)[zf-H2C2_5] C2H2-type zinc-finger domain"; CDD "FOG: Zn-finger [General function prediction only]"; KO "(1)K09228"; similar_genes "(1)KLF15_MOUSE(e-value:5.2e-10;bit-score:62.0)"; Scaffold002 rebuild exon 1353310 1353326 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1353458 1353786 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1353846 1353905 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1353978 1354067 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1354137 1354226 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1354314 1354403 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1354482 1354549 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1354652 1354741 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1354821 1354910 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild exon 1355165 1355230 . + . gene_id "RvY_03864"; transcript_id "RvY_03864.2"; Scaffold002 rebuild transcript 1357338 1357554 . + . gene_id "RvY_03865"; transcript_id "RvY_03865.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1357338 1357412 . + . gene_id "RvY_03865"; transcript_id "RvY_03865.1"; Scaffold002 rebuild exon 1357489 1357554 . + . gene_id "RvY_03865"; transcript_id "RvY_03865.1"; Scaffold002 rebuild transcript 1358126 1360906 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; gene_name "K00934"; annotation "Arginine kinase"; Pfam "[ATP-gua_PtransN] ATP:guanido phosphotransferase, N-terminal domain|[ATP-gua_Ptrans] ATP:guanido phosphotransferase, C-terminal catalytic domain"; EC "EC2.7.3.3"; KO "K00934"; similar_genes "KARG_PENJP(e-value:1.1e-109;bit-score:393.0)"; Scaffold002 rebuild exon 1358126 1358300 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild exon 1358641 1358732 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild exon 1359008 1359184 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild exon 1359256 1359404 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild exon 1359694 1359859 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild exon 1360395 1360634 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild exon 1360811 1360906 . + . gene_id "RvY_03866"; transcript_id "RvY_03866.1"; Scaffold002 rebuild transcript 1363943 1364344 . - . gene_id "RvY_03867"; transcript_id "RvY_03867.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1363943 1364344 . - . gene_id "RvY_03867"; transcript_id "RvY_03867.1"; Scaffold002 rebuild transcript 1365245 1366360 . - . gene_id "RvY_03868"; transcript_id "RvY_03868.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 1365245 1366360 . - . gene_id "RvY_03868"; transcript_id "RvY_03868.1"; Scaffold002 rebuild transcript 1366360 1366548 . - . gene_id "RvY_03869"; transcript_id "RvY_03869.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1366360 1366548 . - . gene_id "RvY_03869"; transcript_id "RvY_03869.1"; Scaffold002 rebuild transcript 1367647 1367802 . + . gene_id "RvY_03870"; transcript_id "RvY_03870.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1367647 1367802 . + . gene_id "RvY_03870"; transcript_id "RvY_03870.1"; Scaffold002 rebuild transcript 1368803 1369618 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1368803 1368851 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.1"; Scaffold002 rebuild exon 1368927 1369618 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.1"; Scaffold002 rebuild transcript 1368923 1369618 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1368923 1369618 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.2"; Scaffold002 rebuild transcript 1368803 1369857 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1368803 1368851 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.3"; Scaffold002 rebuild exon 1368927 1369066 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.3"; Scaffold002 rebuild exon 1369172 1369469 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.3"; Scaffold002 rebuild exon 1369676 1369857 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.3"; Scaffold002 rebuild transcript 1368803 1369618 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1368803 1368851 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.4"; Scaffold002 rebuild exon 1368927 1369066 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.4"; Scaffold002 rebuild exon 1369178 1369618 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.4"; Scaffold002 rebuild transcript 1368923 1369857 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.5"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1368923 1369066 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.5"; Scaffold002 rebuild exon 1369178 1369469 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.5"; Scaffold002 rebuild exon 1369676 1369857 . - . gene_id "RvY_03871"; transcript_id "RvY_03871.5"; Scaffold002 rebuild transcript 1369948 1372129 . - . gene_id "RvY_03872"; transcript_id "RvY_03872.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1369948 1370160 . - . gene_id "RvY_03872"; transcript_id "RvY_03872.1"; Scaffold002 rebuild exon 1371100 1371309 . - . gene_id "RvY_03872"; transcript_id "RvY_03872.1"; Scaffold002 rebuild exon 1372013 1372129 . - . gene_id "RvY_03872"; transcript_id "RvY_03872.1"; Scaffold002 rebuild transcript 1372992 1373183 . - . gene_id "RvY_03873"; transcript_id "RvY_03873.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1372992 1373183 . - . gene_id "RvY_03873"; transcript_id "RvY_03873.1"; Scaffold002 rebuild transcript 1373949 1377951 . + . gene_id "RvY_03874"; transcript_id "RvY_03874.1"; gene_name "TRHR"; annotation "thyrotropin-releasing hormone receptor"; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04282"; Scaffold002 rebuild exon 1373949 1374242 . + . gene_id "RvY_03874"; transcript_id "RvY_03874.1"; Scaffold002 rebuild exon 1374931 1375082 . + . gene_id "RvY_03874"; transcript_id "RvY_03874.1"; Scaffold002 rebuild exon 1376471 1376990 . + . gene_id "RvY_03874"; transcript_id "RvY_03874.1"; Scaffold002 rebuild exon 1377436 1377951 . + . gene_id "RvY_03874"; transcript_id "RvY_03874.1"; Scaffold002 rebuild transcript 1379506 1379769 . - . gene_id "RvY_03875"; transcript_id "RvY_03875.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1379506 1379769 . - . gene_id "RvY_03875"; transcript_id "RvY_03875.1"; Scaffold002 rebuild transcript 1381214 1381630 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1381214 1381630 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.1"; Scaffold002 rebuild transcript 1381214 1381630 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1381214 1381223 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.2"; Scaffold002 rebuild exon 1381365 1381630 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.2"; Scaffold002 rebuild transcript 1381048 1381440 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1381048 1381223 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.3"; Scaffold002 rebuild exon 1381365 1381440 . - . gene_id "RvY_03876"; transcript_id "RvY_03876.3"; Scaffold002 rebuild transcript 1381777 1382416 . - . gene_id "RvY_03877"; transcript_id "RvY_03877.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1381777 1382198 . - . gene_id "RvY_03877"; transcript_id "RvY_03877.1"; Scaffold002 rebuild exon 1382308 1382416 . - . gene_id "RvY_03877"; transcript_id "RvY_03877.1"; Scaffold002 rebuild transcript 1382120 1382371 . + . gene_id "RvY_03878"; transcript_id "RvY_03878.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1382120 1382371 . + . gene_id "RvY_03878"; transcript_id "RvY_03878.1"; Scaffold002 rebuild transcript 1382830 1383225 . + . gene_id "RvY_03879"; transcript_id "RvY_03879.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1382830 1383225 . + . gene_id "RvY_03879"; transcript_id "RvY_03879.1"; Scaffold002 rebuild transcript 1384074 1384364 . + . gene_id "RvY_03880"; transcript_id "RvY_03880.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1384074 1384364 . + . gene_id "RvY_03880"; transcript_id "RvY_03880.1"; Scaffold002 rebuild transcript 1385514 1386630 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1385514 1385586 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; Scaffold002 rebuild exon 1385679 1385798 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; Scaffold002 rebuild exon 1385879 1385930 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; Scaffold002 rebuild exon 1386022 1386181 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; Scaffold002 rebuild exon 1386265 1386519 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; Scaffold002 rebuild exon 1386592 1386630 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.1"; Scaffold002 rebuild transcript 1385514 1386534 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1385514 1385586 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.2"; Scaffold002 rebuild exon 1385679 1385798 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.2"; Scaffold002 rebuild exon 1385879 1385930 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.2"; Scaffold002 rebuild exon 1386022 1386181 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.2"; Scaffold002 rebuild exon 1386265 1386534 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.2"; Scaffold002 rebuild transcript 1386044 1386630 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1386044 1386181 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.3"; Scaffold002 rebuild exon 1386265 1386519 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.3"; Scaffold002 rebuild exon 1386586 1386630 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.3"; Scaffold002 rebuild transcript 1386049 1386515 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.4"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 1386049 1386181 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.4"; Scaffold002 rebuild exon 1386265 1386515 . + . gene_id "RvY_03881"; transcript_id "RvY_03881.4"; Scaffold002 rebuild transcript 1388916 1389134 . - . gene_id "RvY_03882"; transcript_id "RvY_03882.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1388916 1389134 . - . gene_id "RvY_03882"; transcript_id "RvY_03882.1"; Scaffold002 rebuild transcript 1390544 1392422 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; gene_name "K01310"; annotation "chymotrypsin [EC:3.4.21.1]"; Pfam "[DUF1986]|[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1390544 1390631 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild exon 1390707 1391062 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild exon 1391128 1391355 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild exon 1391419 1391669 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild exon 1391760 1391837 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild exon 1391920 1391980 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild exon 1392066 1392422 . - . gene_id "RvY_03883"; transcript_id "RvY_03883.1"; Scaffold002 rebuild transcript 1393542 1394090 . + . gene_id "RvY_03884"; transcript_id "RvY_03884.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1393542 1394090 . + . gene_id "RvY_03884"; transcript_id "RvY_03884.1"; Scaffold002 rebuild transcript 1394479 1395199 . + . gene_id "RvY_03885"; transcript_id "RvY_03885.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1394479 1394518 . + . gene_id "RvY_03885"; transcript_id "RvY_03885.1"; Scaffold002 rebuild exon 1395018 1395199 . + . gene_id "RvY_03885"; transcript_id "RvY_03885.1"; Scaffold002 rebuild transcript 1396224 1397059 . - . gene_id "RvY_03886"; transcript_id "RvY_03886.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; Pfam "[Phage_integrase] Phage integrase family"; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold002 rebuild exon 1396224 1397008 . - . gene_id "RvY_03886"; transcript_id "RvY_03886.1"; Scaffold002 rebuild exon 1397017 1397059 . - . gene_id "RvY_03886"; transcript_id "RvY_03886.1"; Scaffold002 rebuild transcript 1397165 1398688 . - . gene_id "RvY_03887"; transcript_id "RvY_03887.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold002 rebuild exon 1397165 1398688 . - . gene_id "RvY_03887"; transcript_id "RvY_03887.1"; Scaffold002 rebuild transcript 1398738 1400492 . - . gene_id "RvY_03888"; transcript_id "RvY_03888.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1398738 1399805 . - . gene_id "RvY_03888"; transcript_id "RvY_03888.1"; Scaffold002 rebuild exon 1400397 1400492 . - . gene_id "RvY_03888"; transcript_id "RvY_03888.1"; Scaffold002 rebuild transcript 1403877 1406207 . + . gene_id "RvY_03889"; transcript_id "RvY_03889.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 1403877 1404166 . + . gene_id "RvY_03889"; transcript_id "RvY_03889.1"; Scaffold002 rebuild exon 1404557 1405040 . + . gene_id "RvY_03889"; transcript_id "RvY_03889.1"; Scaffold002 rebuild exon 1405181 1405520 . + . gene_id "RvY_03889"; transcript_id "RvY_03889.1"; Scaffold002 rebuild exon 1405840 1406207 . + . gene_id "RvY_03889"; transcript_id "RvY_03889.1"; Scaffold002 rebuild transcript 1406512 1409654 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; gene_name "GST_N_Metaxin_like"; annotation "hypothetical protein."; CDD "GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. elegans. The fax gene of Drosophila was identified as a genetic modifier of Abelson (Abl) tyrosine kinase. The fax protein is localized in cellular membranes and is expressed in embryonic mesoderm and axons of the central nervous system."; Scaffold002 rebuild exon 1406512 1406646 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild exon 1406727 1407091 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild exon 1407515 1407631 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild exon 1408296 1408504 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild exon 1408940 1409139 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild exon 1409298 1409445 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild exon 1409647 1409654 . - . gene_id "RvY_03890"; transcript_id "RvY_03890.1"; Scaffold002 rebuild transcript 1410937 1411131 . - . gene_id "RvY_03891"; transcript_id "RvY_03891.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1410937 1411131 . - . gene_id "RvY_03891"; transcript_id "RvY_03891.1"; Scaffold002 rebuild transcript 1411878 1413062 . + . gene_id "RvY_03892"; transcript_id "RvY_03892.1"; gene_name "GRX_PICOT_like"; annotation "putative Glutaredoxin-3"; Pfam "[Glutaredoxin]|[Thioredoxin]"; CDD "Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum."; similar_genes "GLRX3_XENTR(e-value:4.2e-33;bit-score:139.0)"; Scaffold002 rebuild exon 1411878 1411978 . + . gene_id "RvY_03892"; transcript_id "RvY_03892.1"; Scaffold002 rebuild exon 1412111 1412300 . + . gene_id "RvY_03892"; transcript_id "RvY_03892.1"; Scaffold002 rebuild exon 1412580 1412781 . + . gene_id "RvY_03892"; transcript_id "RvY_03892.1"; Scaffold002 rebuild exon 1412839 1413062 . + . gene_id "RvY_03892"; transcript_id "RvY_03892.1"; Scaffold002 rebuild transcript 1413404 1415943 . + . gene_id "RvY_03893"; transcript_id "RvY_03893.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1413404 1413716 . + . gene_id "RvY_03893"; transcript_id "RvY_03893.1"; Scaffold002 rebuild exon 1414578 1414850 . + . gene_id "RvY_03893"; transcript_id "RvY_03893.1"; Scaffold002 rebuild exon 1415151 1415392 . + . gene_id "RvY_03893"; transcript_id "RvY_03893.1"; Scaffold002 rebuild exon 1415488 1415818 . + . gene_id "RvY_03893"; transcript_id "RvY_03893.1"; Scaffold002 rebuild exon 1415855 1415943 . + . gene_id "RvY_03893"; transcript_id "RvY_03893.1"; Scaffold002 rebuild transcript 1417764 1418006 . + . gene_id "RvY_03894"; transcript_id "RvY_03894.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1417764 1418006 . + . gene_id "RvY_03894"; transcript_id "RvY_03894.1"; Scaffold002 rebuild transcript 1418173 1418559 . + . gene_id "RvY_03895"; transcript_id "RvY_03895.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1418173 1418559 . + . gene_id "RvY_03895"; transcript_id "RvY_03895.1"; Scaffold002 rebuild transcript 1418875 1420104 . + . gene_id "RvY_03896"; transcript_id "RvY_03896.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1418875 1419058 . + . gene_id "RvY_03896"; transcript_id "RvY_03896.1"; Scaffold002 rebuild exon 1419375 1419710 . + . gene_id "RvY_03896"; transcript_id "RvY_03896.1"; Scaffold002 rebuild exon 1419908 1420104 . + . gene_id "RvY_03896"; transcript_id "RvY_03896.1"; Scaffold002 rebuild transcript 1420314 1421324 . - . gene_id "RvY_03897"; transcript_id "RvY_03897.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1420314 1421324 . - . gene_id "RvY_03897"; transcript_id "RvY_03897.1"; Scaffold002 rebuild transcript 1422250 1425494 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; gene_name "ABLIM"; annotation "actin-binding LIM protein"; Pfam "[VHP] Villin headpiece domain"; CDD "Villin headpiece domain."; KO "K07520"; Scaffold002 rebuild exon 1422250 1422363 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1422462 1422524 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1422588 1422754 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1422841 1422907 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1422975 1423081 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1423156 1423275 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1423355 1423942 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1424230 1424377 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1424502 1424561 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1424857 1425055 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild exon 1425421 1425494 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.1"; Scaffold002 rebuild transcript 1422250 1425494 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; gene_name "ABLIM"; annotation "actin-binding LIM protein"; Pfam "[VHP] Villin headpiece domain"; CDD "Villin headpiece domain."; KO "K07520"; Scaffold002 rebuild exon 1422250 1422363 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1422462 1422524 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1422588 1422754 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1422841 1422907 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1422975 1423081 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1423156 1423275 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1423355 1423942 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1424230 1424377 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1424857 1425055 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild exon 1425421 1425494 . - . gene_id "RvY_03898"; transcript_id "RvY_03898.2"; Scaffold002 rebuild transcript 1431865 1432161 . + . gene_id "RvY_03899"; transcript_id "RvY_03899.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1431865 1431954 . + . gene_id "RvY_03899"; transcript_id "RvY_03899.1"; Scaffold002 rebuild exon 1432075 1432161 . + . gene_id "RvY_03899"; transcript_id "RvY_03899.1"; Scaffold002 rebuild transcript 1432649 1432822 . + . gene_id "RvY_03900"; transcript_id "RvY_03900.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1432649 1432822 . + . gene_id "RvY_03900"; transcript_id "RvY_03900.1"; Scaffold002 rebuild transcript 1432941 1433243 . - . gene_id "RvY_03901"; transcript_id "RvY_03901.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1432941 1433243 . - . gene_id "RvY_03901"; transcript_id "RvY_03901.1"; Scaffold002 rebuild transcript 1433661 1434283 . - . gene_id "RvY_03902"; transcript_id "RvY_03902.1"; gene_name "NmrA"; annotation "hypothetical protein."; Pfam "[NmrA] NmrA-like family|[NAD_binding_10] NADH(P)-binding"; CDD "NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families."; Scaffold002 rebuild exon 1433661 1434066 . - . gene_id "RvY_03902"; transcript_id "RvY_03902.1"; Scaffold002 rebuild exon 1434222 1434283 . - . gene_id "RvY_03902"; transcript_id "RvY_03902.1"; Scaffold002 rebuild transcript 1434380 1435307 . - . gene_id "RvY_03903"; transcript_id "RvY_03903.1"; annotation "hypothetical protein."; Pfam "[Sugar_tr] Sugar (and other) transporter"; Scaffold002 rebuild exon 1434380 1434885 . - . gene_id "RvY_03903"; transcript_id "RvY_03903.1"; Scaffold002 rebuild exon 1435139 1435307 . - . gene_id "RvY_03903"; transcript_id "RvY_03903.1"; Scaffold002 rebuild transcript 1435488 1436091 . - . gene_id "RvY_03904"; transcript_id "RvY_03904.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1435488 1435804 . - . gene_id "RvY_03904"; transcript_id "RvY_03904.1"; Scaffold002 rebuild exon 1435869 1436091 . - . gene_id "RvY_03904"; transcript_id "RvY_03904.1"; Scaffold002 rebuild transcript 1435771 1436200 . - . gene_id "RvY_03904"; transcript_id "RvY_03904.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1435771 1435804 . - . gene_id "RvY_03904"; transcript_id "RvY_03904.2"; Scaffold002 rebuild exon 1435869 1436200 . - . gene_id "RvY_03904"; transcript_id "RvY_03904.2"; Scaffold002 rebuild transcript 1437085 1442321 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; gene_name "PRSS15"; annotation "Lon protease homolog, mitochondrial"; Pfam "[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[LON] ATP-dependent protease La (LON) domain|[AAA_2] AAA domain (Cdc48 subfamily)|[ChlI] Subunit ChlI of Mg-chelatase|[Lon_C] Lon protease (S16) C-terminal proteolytic domain"; CDD "ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock."; EC "EC3.4.21.-"; KO "K08675"; similar_genes "LONM_MOUSE(e-value:7.9e-185;bit-score:643.0)"; Scaffold002 rebuild exon 1437085 1437477 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1437551 1437651 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1438352 1438667 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1438729 1438962 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1439154 1439563 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1439829 1440014 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1440153 1440411 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1440637 1440894 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1440957 1441125 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1441582 1441958 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild exon 1442136 1442321 . + . gene_id "RvY_03905"; transcript_id "RvY_03905.1"; Scaffold002 rebuild transcript 1442603 1444067 . + . gene_id "RvY_03906"; transcript_id "RvY_03906.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; similar_genes "CASD1_DANRE(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 1442603 1442874 . + . gene_id "RvY_03906"; transcript_id "RvY_03906.1"; Scaffold002 rebuild exon 1442943 1443302 . + . gene_id "RvY_03906"; transcript_id "RvY_03906.1"; Scaffold002 rebuild exon 1443414 1443603 . + . gene_id "RvY_03906"; transcript_id "RvY_03906.1"; Scaffold002 rebuild exon 1443933 1444067 . + . gene_id "RvY_03906"; transcript_id "RvY_03906.1"; Scaffold002 rebuild transcript 1444402 1444890 . + . gene_id "RvY_03907"; transcript_id "RvY_03907.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1444402 1444462 . + . gene_id "RvY_03907"; transcript_id "RvY_03907.1"; Scaffold002 rebuild exon 1444559 1444890 . + . gene_id "RvY_03907"; transcript_id "RvY_03907.1"; Scaffold002 rebuild transcript 1444566 1444874 . + . gene_id "RvY_03907"; transcript_id "RvY_03907.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1444566 1444874 . + . gene_id "RvY_03907"; transcript_id "RvY_03907.2"; Scaffold002 rebuild transcript 1445606 1446346 . + . gene_id "RvY_03908"; transcript_id "RvY_03908.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1445606 1445675 . + . gene_id "RvY_03908"; transcript_id "RvY_03908.1"; Scaffold002 rebuild exon 1446033 1446346 . + . gene_id "RvY_03908"; transcript_id "RvY_03908.1"; Scaffold002 rebuild transcript 1447252 1448842 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1447252 1447503 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.1"; Scaffold002 rebuild exon 1447754 1447787 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.1"; Scaffold002 rebuild exon 1448295 1448475 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.1"; Scaffold002 rebuild exon 1448770 1448842 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.1"; Scaffold002 rebuild transcript 1448291 1448995 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1448291 1448475 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.2"; Scaffold002 rebuild exon 1448770 1448995 . - . gene_id "RvY_03909"; transcript_id "RvY_03909.2"; Scaffold002 rebuild transcript 1449236 1449587 . - . gene_id "RvY_03910"; transcript_id "RvY_03910.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1449236 1449391 . - . gene_id "RvY_03910"; transcript_id "RvY_03910.1"; Scaffold002 rebuild exon 1449474 1449587 . - . gene_id "RvY_03910"; transcript_id "RvY_03910.1"; Scaffold002 rebuild transcript 1450690 1452958 . + . gene_id "RvY_03911"; transcript_id "RvY_03911.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1450690 1450857 . + . gene_id "RvY_03911"; transcript_id "RvY_03911.1"; Scaffold002 rebuild exon 1452794 1452958 . + . gene_id "RvY_03911"; transcript_id "RvY_03911.1"; Scaffold002 rebuild transcript 1453039 1454472 . + . gene_id "RvY_03912"; transcript_id "RvY_03912.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 1453039 1453182 . + . gene_id "RvY_03912"; transcript_id "RvY_03912.1"; Scaffold002 rebuild exon 1453328 1453960 . + . gene_id "RvY_03912"; transcript_id "RvY_03912.1"; Scaffold002 rebuild exon 1454110 1454472 . + . gene_id "RvY_03912"; transcript_id "RvY_03912.1"; Scaffold002 rebuild transcript 1459583 1461954 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; gene_name "(1)NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 1459583 1459676 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1459735 1459772 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1459859 1460000 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1460119 1460702 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1461017 1461184 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1461265 1461469 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1461550 1461788 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild exon 1461928 1461954 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.1"; Scaffold002 rebuild transcript 1460127 1461800 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.2"; gene_name "(1)NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "(1)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 1460127 1460702 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.2"; Scaffold002 rebuild exon 1461017 1461184 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.2"; Scaffold002 rebuild exon 1461265 1461469 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.2"; Scaffold002 rebuild exon 1461550 1461800 . + . gene_id "RvY_03913"; transcript_id "RvY_03913.2"; Scaffold002 rebuild transcript 1464009 1464796 . - . gene_id "RvY_03914"; transcript_id "RvY_03914.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1464009 1464415 . - . gene_id "RvY_03914"; transcript_id "RvY_03914.1"; Scaffold002 rebuild exon 1464715 1464796 . - . gene_id "RvY_03914"; transcript_id "RvY_03914.1"; Scaffold002 rebuild transcript 1465027 1469301 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; gene_name "TPP2"; annotation "tripeptidyl-peptidase II [EC:3.4.14.10]"; Pfam "[Peptidase_S8] Subtilase family|[TPPII] Tripeptidyl peptidase II"; EC "EC3.4.14.10"; KO "K01280"; similar_genes "TPP2_HUMAN(e-value:6.3e-17;bit-score:85.0)"; Scaffold002 rebuild exon 1465027 1465388 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1465623 1465802 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1465873 1466167 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1466482 1466859 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1467145 1467299 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1467364 1467671 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1467980 1468409 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1468780 1468953 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild exon 1469025 1469301 . - . gene_id "RvY_03915"; transcript_id "RvY_03915.1"; Scaffold002 rebuild transcript 1469346 1470477 . - . gene_id "RvY_03916"; transcript_id "RvY_03916.1"; annotation "hypothetical protein."; EC "EC3.4.14.10"; similar_genes "TPP2_HUMAN(e-value:5.0e-21;bit-score:99.0)"; Scaffold002 rebuild exon 1469346 1469561 . - . gene_id "RvY_03916"; transcript_id "RvY_03916.1"; Scaffold002 rebuild exon 1469873 1470187 . - . gene_id "RvY_03916"; transcript_id "RvY_03916.1"; Scaffold002 rebuild exon 1470258 1470313 . - . gene_id "RvY_03916"; transcript_id "RvY_03916.1"; Scaffold002 rebuild exon 1470381 1470477 . - . gene_id "RvY_03916"; transcript_id "RvY_03916.1"; Scaffold002 rebuild transcript 1470539 1470907 . + . gene_id "RvY_03917"; transcript_id "RvY_03917.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1470539 1470907 . + . gene_id "RvY_03917"; transcript_id "RvY_03917.1"; Scaffold002 rebuild transcript 1471140 1472436 . + . gene_id "RvY_03918"; transcript_id "RvY_03918.1"; gene_name "K00326"; annotation "NADH-cytochrome b5 reductase 2"; Pfam "[FAD_binding_6] Oxidoreductase FAD-binding domain|[NAD_binding_6] Ferric reductase NAD binding domain|[NAD_binding_1] Oxidoreductase NAD-binding domain"; CDD "Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH."; EC "EC1.6.2.2"; KO "K00326"; similar_genes "NB5R2_XENLA(e-value:9.8e-109;bit-score:390.0)"; Scaffold002 rebuild exon 1471140 1471512 . + . gene_id "RvY_03918"; transcript_id "RvY_03918.1"; Scaffold002 rebuild exon 1471720 1471935 . + . gene_id "RvY_03918"; transcript_id "RvY_03918.1"; Scaffold002 rebuild exon 1471997 1472031 . + . gene_id "RvY_03918"; transcript_id "RvY_03918.1"; Scaffold002 rebuild exon 1472092 1472436 . + . gene_id "RvY_03918"; transcript_id "RvY_03918.1"; Scaffold002 rebuild transcript 1472768 1474887 . - . gene_id "RvY_03919"; transcript_id "RvY_03919.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1472768 1472904 . - . gene_id "RvY_03919"; transcript_id "RvY_03919.1"; Scaffold002 rebuild exon 1472977 1473242 . - . gene_id "RvY_03919"; transcript_id "RvY_03919.1"; Scaffold002 rebuild exon 1473304 1473460 . - . gene_id "RvY_03919"; transcript_id "RvY_03919.1"; Scaffold002 rebuild exon 1474722 1474887 . - . gene_id "RvY_03919"; transcript_id "RvY_03919.1"; Scaffold002 rebuild transcript 1475421 1478819 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; gene_name "katE"; annotation "Catalase HPII"; Pfam "[Catalase-rel] Catalase-related immune-responsive|[Catalase]|[DJ-1_PfpI] DJ-1/PfpI family"; CDD "hydroperoxidase II; Provisional"; EC "EC1.11.1.6"; KO "K03781"; similar_genes "CATE_ECOLI(e-value:2.0e-164;bit-score:575.0)"; Scaffold002 rebuild exon 1475421 1475711 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1475883 1476218 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1476467 1476611 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1476724 1476807 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1476879 1476946 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1477008 1477428 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1477792 1478318 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild exon 1478460 1478819 . + . gene_id "RvY_03920"; transcript_id "RvY_03920.1"; Scaffold002 rebuild transcript 1479938 1483532 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; gene_name "PDZ_signaling"; annotation "hypothetical protein."; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; Scaffold002 rebuild exon 1479938 1480127 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1480478 1480579 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1480651 1480860 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1481785 1481885 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1481976 1482126 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1482189 1482609 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1482679 1483282 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild exon 1483350 1483532 . + . gene_id "RvY_03921"; transcript_id "RvY_03921.1"; Scaffold002 rebuild transcript 1484533 1487663 . - . gene_id "RvY_03922"; transcript_id "RvY_03922.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1484533 1485945 . - . gene_id "RvY_03922"; transcript_id "RvY_03922.1"; Scaffold002 rebuild exon 1486179 1486336 . - . gene_id "RvY_03922"; transcript_id "RvY_03922.1"; Scaffold002 rebuild exon 1486410 1486793 . - . gene_id "RvY_03922"; transcript_id "RvY_03922.1"; Scaffold002 rebuild exon 1486965 1487052 . - . gene_id "RvY_03922"; transcript_id "RvY_03922.1"; Scaffold002 rebuild exon 1487172 1487663 . - . gene_id "RvY_03922"; transcript_id "RvY_03922.1"; Scaffold002 rebuild transcript 1488386 1489129 . - . gene_id "RvY_03923"; transcript_id "RvY_03923.1"; gene_name "AdoMet_MTases"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain"; CDD "S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.)."; Scaffold002 rebuild exon 1488386 1489129 . - . gene_id "RvY_03923"; transcript_id "RvY_03923.1"; Scaffold002 rebuild transcript 1490399 1492095 . - . gene_id "RvY_03924"; transcript_id "RvY_03924.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1490399 1490923 . - . gene_id "RvY_03924"; transcript_id "RvY_03924.1"; Scaffold002 rebuild exon 1490995 1491348 . - . gene_id "RvY_03924"; transcript_id "RvY_03924.1"; Scaffold002 rebuild exon 1491524 1491771 . - . gene_id "RvY_03924"; transcript_id "RvY_03924.1"; Scaffold002 rebuild exon 1491835 1492010 . - . gene_id "RvY_03924"; transcript_id "RvY_03924.1"; Scaffold002 rebuild exon 1492076 1492095 . - . gene_id "RvY_03924"; transcript_id "RvY_03924.1"; Scaffold002 rebuild transcript 1490433 1490664 . + . gene_id "RvY_03925"; transcript_id "RvY_03925.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1490433 1490529 . + . gene_id "RvY_03925"; transcript_id "RvY_03925.1"; Scaffold002 rebuild exon 1490564 1490664 . + . gene_id "RvY_03925"; transcript_id "RvY_03925.1"; Scaffold002 rebuild transcript 1493024 1494911 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; gene_name "AURKX"; annotation "Serine/threonine-protein kinase ark1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08850"; similar_genes "ARK1_SCHPO(e-value:2.8e-68;bit-score:256.0)"; Scaffold002 rebuild exon 1493024 1493094 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; Scaffold002 rebuild exon 1493161 1493360 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; Scaffold002 rebuild exon 1493493 1493779 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; Scaffold002 rebuild exon 1493848 1493938 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; Scaffold002 rebuild exon 1494195 1494258 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; Scaffold002 rebuild exon 1494584 1494911 . + . gene_id "RvY_03926"; transcript_id "RvY_03926.1"; Scaffold002 rebuild transcript 1496229 1499237 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; gene_name "purF"; annotation "Amidophosphoribosyltransferase"; Pfam "[Pribosyltran] Phosphoribosyl transferase domain|[GATase_7] Glutamine amidotransferase domain|[GATase_2] Glutamine amidotransferases class-II|[GATase_6] Glutamine amidotransferase domain"; CDD "amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase."; EC "EC2.4.2.14"; KO "K00764"; similar_genes "PUR1_RAT(e-value:1.4e-69;bit-score:260.0)"; Scaffold002 rebuild exon 1496229 1496362 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1496685 1497045 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1497202 1497426 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1497516 1497684 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1497778 1498026 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1498093 1498220 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1498456 1498677 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild exon 1498917 1499237 . + . gene_id "RvY_03927"; transcript_id "RvY_03927.1"; Scaffold002 rebuild transcript 1501116 1505313 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; gene_name "GNRHR"; annotation "gonadotropin-releasing hormone receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04280"; Scaffold002 rebuild exon 1501116 1501388 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; Scaffold002 rebuild exon 1503554 1503644 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; Scaffold002 rebuild exon 1503746 1503885 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; Scaffold002 rebuild exon 1504072 1504282 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; Scaffold002 rebuild exon 1504467 1504583 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; Scaffold002 rebuild exon 1504835 1505313 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.1"; Scaffold002 rebuild transcript 1501116 1505313 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; gene_name "GNRHR"; annotation "gonadotropin-releasing hormone receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04280"; Scaffold002 rebuild exon 1501116 1501385 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; Scaffold002 rebuild exon 1503554 1503644 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; Scaffold002 rebuild exon 1503746 1503885 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; Scaffold002 rebuild exon 1504072 1504282 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; Scaffold002 rebuild exon 1504467 1504583 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; Scaffold002 rebuild exon 1504835 1505313 . + . gene_id "RvY_03928"; transcript_id "RvY_03928.2"; Scaffold002 rebuild transcript 1509021 1519614 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; annotation "hypothetical protein."; Pfam "[Reo_sigmaC] Reovirus sigma C capsid protein|[Cast] RIM-binding protein of the cytomatrix Scaffold002 rebuild exon 1509021 1509080 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1509186 1509333 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1509481 1509641 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1509768 1511717 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1512425 1512703 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1513014 1513181 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1513280 1513447 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1513554 1513712 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1515092 1515208 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1515387 1515794 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1517914 1518865 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild exon 1519217 1519614 . - . gene_id "RvY_03929"; transcript_id "RvY_03929.1"; Scaffold002 rebuild transcript 1521442 1521678 . - . gene_id "RvY_03930"; transcript_id "RvY_03930.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1521442 1521678 . - . gene_id "RvY_03930"; transcript_id "RvY_03930.1"; Scaffold002 rebuild transcript 1522943 1523425 . + . gene_id "RvY_03931"; transcript_id "RvY_03931.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1522943 1523425 . + . gene_id "RvY_03931"; transcript_id "RvY_03931.1"; Scaffold002 rebuild transcript 1524647 1526735 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 1524647 1526048 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.1"; Scaffold002 rebuild exon 1526210 1526379 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.1"; Scaffold002 rebuild exon 1526487 1526735 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.1"; Scaffold002 rebuild transcript 1524647 1526735 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.2"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 1524647 1526045 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.2"; Scaffold002 rebuild exon 1526219 1526379 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.2"; Scaffold002 rebuild exon 1526487 1526735 . - . gene_id "RvY_03932"; transcript_id "RvY_03932.2"; Scaffold002 rebuild transcript 1534042 1534533 . + . gene_id "RvY_03933"; transcript_id "RvY_03933.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1534042 1534533 . + . gene_id "RvY_03933"; transcript_id "RvY_03933.1"; Scaffold002 rebuild transcript 1538937 1540728 . + . gene_id "RvY_03934"; transcript_id "RvY_03934.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 1538937 1539848 . + . gene_id "RvY_03934"; transcript_id "RvY_03934.1"; Scaffold002 rebuild exon 1540594 1540728 . + . gene_id "RvY_03934"; transcript_id "RvY_03934.1"; Scaffold002 rebuild transcript 1548132 1552151 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; gene_name "QARS"; annotation "Probable glutaminyl-tRNA synthetase"; Pfam "(1)[tRNA-synt_1c_C] tRNA synthetases class I (E and Q), anti-codon binding domain|[tRNA_synt_1c_R1] Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1|[tRNA_synt_1c_R2] Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2|[tRNA-synt_1c] tRNA synthetases class I (E and Q), catalytic domain"; CDD "glutaminyl-tRNA synthetase; Provisional"; EC "EC6.1.1.18"; KO "K01886"; similar_genes "(1)SYQ_DROME(e-value:1.0e-201;bit-score:699.0)(2)SYQ_DROME(e-value:2.2e-144;bit-score:509.0)"; Scaffold002 rebuild exon 1548132 1548248 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1548323 1548476 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1548839 1548951 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1549029 1549226 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1549417 1549623 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1549710 1549896 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1549966 1550225 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1550391 1550680 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1550751 1550838 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1551152 1551400 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1551618 1552031 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild exon 1552101 1552151 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.1"; Scaffold002 rebuild transcript 1548132 1550684 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; gene_name "QARS"; annotation "Probable glutaminyl-tRNA synthetase"; Pfam "(1)[tRNA-synt_1c_C] tRNA synthetases class I (E and Q), anti-codon binding domain|[tRNA_synt_1c_R1] Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1|[tRNA_synt_1c_R2] Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2|[tRNA-synt_1c] tRNA synthetases class I (E and Q), catalytic domain"; CDD "glutaminyl-tRNA synthetase; Provisional"; EC "EC6.1.1.18"; KO "K01886"; similar_genes "(1)SYQ_DROME(e-value:1.0e-201;bit-score:699.0)(2)SYQ_DROME(e-value:2.2e-144;bit-score:509.0)"; Scaffold002 rebuild exon 1548132 1548248 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1548323 1548476 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1548839 1548951 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1549029 1549226 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1549417 1549623 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1549710 1549896 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1549966 1550225 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild exon 1550391 1550684 . + . gene_id "RvY_03935"; transcript_id "RvY_03935.2"; Scaffold002 rebuild transcript 1552547 1552744 . + . gene_id "RvY_03936"; transcript_id "RvY_03936.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1552547 1552744 . + . gene_id "RvY_03936"; transcript_id "RvY_03936.1"; Scaffold002 rebuild transcript 1554114 1555133 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.1"; annotation "hypothetical protein."; similar_genes "IQUB_MOUSE(e-value:2.7e-11;bit-score:67.0)"; Scaffold002 rebuild exon 1554114 1554224 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.1"; Scaffold002 rebuild exon 1554432 1554872 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.1"; Scaffold002 rebuild exon 1554978 1555133 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.1"; Scaffold002 rebuild transcript 1554498 1555133 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.2"; annotation "hypothetical protein."; similar_genes "IQUB_MOUSE(e-value:2.7e-11;bit-score:67.0)"; Scaffold002 rebuild exon 1554498 1554872 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.2"; Scaffold002 rebuild exon 1554978 1555133 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.2"; Scaffold002 rebuild transcript 1554549 1555133 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.3"; annotation "hypothetical protein."; similar_genes "IQUB_MOUSE(e-value:2.7e-11;bit-score:67.0)"; Scaffold002 rebuild exon 1554549 1554872 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.3"; Scaffold002 rebuild exon 1554978 1555133 . + . gene_id "RvY_03937"; transcript_id "RvY_03937.3"; Scaffold002 rebuild transcript 1555459 1557771 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; gene_name "GH18_chitolectin_chitotriosidase"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold002 rebuild exon 1555459 1555668 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1555735 1555792 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1555883 1555943 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1556006 1556048 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1556115 1556199 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1556261 1556334 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1556422 1556540 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1556634 1557063 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1557132 1557195 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild exon 1557266 1557771 . + . gene_id "RvY_03938"; transcript_id "RvY_03938.1"; Scaffold002 rebuild transcript 1557448 1558275 . - . gene_id "RvY_03939"; transcript_id "RvY_03939.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1557448 1557640 . - . gene_id "RvY_03939"; transcript_id "RvY_03939.1"; Scaffold002 rebuild exon 1558124 1558275 . - . gene_id "RvY_03939"; transcript_id "RvY_03939.1"; Scaffold002 rebuild transcript 1562319 1564738 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; EC "EC3.1.1.1"; similar_genes "ES31L_MOUSE(e-value:2.4e-16;bit-score:83.0)"; Scaffold002 rebuild exon 1562319 1562727 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1562890 1562979 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1563128 1563313 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1563386 1563582 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1563678 1563855 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1563928 1564127 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1564211 1564331 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1564397 1564523 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild exon 1564603 1564738 . + . gene_id "RvY_03940"; transcript_id "RvY_03940.1"; Scaffold002 rebuild transcript 1565285 1567649 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold002 rebuild exon 1565285 1565347 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1565413 1565612 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1565688 1565829 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1565893 1566050 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1566158 1566352 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1566425 1566963 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1567052 1567176 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1567253 1567445 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild exon 1567534 1567649 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.1"; Scaffold002 rebuild transcript 1565285 1567601 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold002 rebuild exon 1565285 1565347 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild exon 1565413 1565612 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild exon 1566425 1566703 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild exon 1566767 1566963 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild exon 1567052 1567176 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild exon 1567253 1567445 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild exon 1567534 1567601 . - . gene_id "RvY_03941"; transcript_id "RvY_03941.2"; Scaffold002 rebuild transcript 1569692 1570325 . + . gene_id "RvY_03942"; transcript_id "RvY_03942.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1569692 1569880 . + . gene_id "RvY_03942"; transcript_id "RvY_03942.1"; Scaffold002 rebuild exon 1569995 1570141 . + . gene_id "RvY_03942"; transcript_id "RvY_03942.1"; Scaffold002 rebuild exon 1570284 1570325 . + . gene_id "RvY_03942"; transcript_id "RvY_03942.1"; Scaffold002 rebuild transcript 1579144 1580169 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.1"; gene_name "(1,3)CYCc"; annotation "(1)putative Guanylate cyclase 32E(2)Atrial natriuretic peptide receptor 1(3)hypothetical protein."; Pfam "(1)[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY3E_DROME(e-value:1.0e-27;bit-score:121.0)(2)ANPRA_RAT(e-value:8.5e-55;bit-score:211.0)(3)GUC2D_HUMAN(e-value:1.9e-20;bit-score:97.0)"; Scaffold002 rebuild exon 1579144 1579165 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.1"; Scaffold002 rebuild exon 1579429 1579606 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.1"; Scaffold002 rebuild exon 1579669 1579821 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.1"; Scaffold002 rebuild exon 1579902 1580169 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.1"; Scaffold002 rebuild transcript 1580020 1580743 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.2"; gene_name "(1,3)CYCc"; annotation "(1)putative Guanylate cyclase 32E(2)Atrial natriuretic peptide receptor 1(3)hypothetical protein."; Pfam "(1)[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY3E_DROME(e-value:1.0e-27;bit-score:121.0)(2)ANPRA_RAT(e-value:8.5e-55;bit-score:211.0)(3)GUC2D_HUMAN(e-value:1.9e-20;bit-score:97.0)"; Scaffold002 rebuild exon 1580020 1580121 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.2"; Scaffold002 rebuild exon 1580189 1580336 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.2"; Scaffold002 rebuild exon 1580420 1580518 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.2"; Scaffold002 rebuild exon 1580580 1580743 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.2"; Scaffold002 rebuild transcript 1579849 1580169 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.3"; gene_name "(1,3)CYCc"; annotation "(1)putative Guanylate cyclase 32E(2)Atrial natriuretic peptide receptor 1(3)hypothetical protein."; Pfam "(1)[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY3E_DROME(e-value:1.0e-27;bit-score:121.0)(2)ANPRA_RAT(e-value:8.5e-55;bit-score:211.0)(3)GUC2D_HUMAN(e-value:1.9e-20;bit-score:97.0)"; Scaffold002 rebuild exon 1579849 1580169 . + . gene_id "RvY_03943"; transcript_id "RvY_03943.3"; Scaffold002 rebuild transcript 1581246 1582783 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; gene_name "(1)Kelch"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|(1)[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "(1)Kelch domain."; Scaffold002 rebuild exon 1581246 1581270 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild exon 1581425 1581620 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild exon 1581695 1581815 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild exon 1581874 1581958 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild exon 1582036 1582185 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild exon 1582275 1582428 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild exon 1582528 1582783 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.1"; Scaffold002 rebuild transcript 1581246 1582190 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.2"; gene_name "(1)Kelch"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|(1)[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "(1)Kelch domain."; Scaffold002 rebuild exon 1581246 1581270 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.2"; Scaffold002 rebuild exon 1581425 1581620 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.2"; Scaffold002 rebuild exon 1581695 1581815 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.2"; Scaffold002 rebuild exon 1581874 1581958 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.2"; Scaffold002 rebuild exon 1582036 1582190 . + . gene_id "RvY_03944"; transcript_id "RvY_03944.2"; Scaffold002 rebuild transcript 1583289 1585246 . + . gene_id "RvY_03945"; transcript_id "RvY_03945.1"; annotation "hypothetical protein."; Pfam "[HTH_23] Homeodomain-like domain|[Homeobox]|[HTH_7] Helix-turn-helix domain of resolvase"; Scaffold002 rebuild exon 1583289 1583583 . + . gene_id "RvY_03945"; transcript_id "RvY_03945.1"; Scaffold002 rebuild exon 1583829 1584203 . + . gene_id "RvY_03945"; transcript_id "RvY_03945.1"; Scaffold002 rebuild exon 1584274 1584576 . + . gene_id "RvY_03945"; transcript_id "RvY_03945.1"; Scaffold002 rebuild exon 1584649 1584742 . + . gene_id "RvY_03945"; transcript_id "RvY_03945.1"; Scaffold002 rebuild exon 1585081 1585246 . + . gene_id "RvY_03945"; transcript_id "RvY_03945.1"; Scaffold002 rebuild transcript 1585677 1586222 . + . gene_id "RvY_03946"; transcript_id "RvY_03946.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1585677 1585818 . + . gene_id "RvY_03946"; transcript_id "RvY_03946.1"; Scaffold002 rebuild exon 1585918 1586222 . + . gene_id "RvY_03946"; transcript_id "RvY_03946.1"; Scaffold002 rebuild transcript 1586729 1589502 . - . gene_id "RvY_03947"; transcript_id "RvY_03947.1"; annotation "hypothetical protein."; Pfam "[VRR_NUC] VRR-NUC domain"; KO "K15363"; similar_genes "MTMRF_DANRE(e-value:3.7e-17;bit-score:86.0)"; Scaffold002 rebuild exon 1586729 1586969 . - . gene_id "RvY_03947"; transcript_id "RvY_03947.1"; Scaffold002 rebuild exon 1587025 1587373 . - . gene_id "RvY_03947"; transcript_id "RvY_03947.1"; Scaffold002 rebuild exon 1587548 1588413 . - . gene_id "RvY_03947"; transcript_id "RvY_03947.1"; Scaffold002 rebuild exon 1588919 1589502 . - . gene_id "RvY_03947"; transcript_id "RvY_03947.1"; Scaffold002 rebuild transcript 1590121 1591279 . - . gene_id "RvY_03948"; transcript_id "RvY_03948.1"; annotation "hypothetical protein."; Pfam "[TBCC] Tubulin binding cofactor C"; Scaffold002 rebuild exon 1590121 1590713 . - . gene_id "RvY_03948"; transcript_id "RvY_03948.1"; Scaffold002 rebuild exon 1590877 1591279 . - . gene_id "RvY_03948"; transcript_id "RvY_03948.1"; Scaffold002 rebuild transcript 1591621 1591959 . + . gene_id "RvY_03949"; transcript_id "RvY_03949.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1591621 1591959 . + . gene_id "RvY_03949"; transcript_id "RvY_03949.1"; Scaffold002 rebuild transcript 1591966 1593416 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; annotation "hypothetical protein."; Pfam "[GILT] Gamma interferon inducible lysosomal thiol reductase (GILT)"; Scaffold002 rebuild exon 1591966 1592199 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild exon 1592361 1592498 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild exon 1592557 1592625 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild exon 1592708 1592782 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild exon 1592854 1592955 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild exon 1593034 1593249 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild exon 1593387 1593416 . + . gene_id "RvY_03950"; transcript_id "RvY_03950.1"; Scaffold002 rebuild transcript 1593705 1594212 . - . gene_id "RvY_03951"; transcript_id "RvY_03951.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1593705 1593775 . - . gene_id "RvY_03951"; transcript_id "RvY_03951.1"; Scaffold002 rebuild exon 1593870 1594212 . - . gene_id "RvY_03951"; transcript_id "RvY_03951.1"; Scaffold002 rebuild transcript 1596679 1597673 . + . gene_id "RvY_03952"; transcript_id "RvY_03952.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1596679 1596989 . + . gene_id "RvY_03952"; transcript_id "RvY_03952.1"; Scaffold002 rebuild exon 1597034 1597673 . + . gene_id "RvY_03952"; transcript_id "RvY_03952.1"; Scaffold002 rebuild transcript 1597702 1598622 . + . gene_id "RvY_03953"; transcript_id "RvY_03953.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 1597702 1598622 . + . gene_id "RvY_03953"; transcript_id "RvY_03953.1"; Scaffold002 rebuild transcript 1598979 1599479 . + . gene_id "RvY_03954"; transcript_id "RvY_03954.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1598979 1599479 . + . gene_id "RvY_03954"; transcript_id "RvY_03954.1"; Scaffold002 rebuild transcript 1600702 1603457 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; gene_name "PIGT"; annotation "phosphatidylinositol glycan, class T"; Pfam "[Gpi16] Gpi16 subunit, GPI transamidase component"; KO "K05292"; similar_genes "PIGT_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold002 rebuild exon 1600702 1601287 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; Scaffold002 rebuild exon 1601504 1601686 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; Scaffold002 rebuild exon 1601757 1601964 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; Scaffold002 rebuild exon 1602034 1602345 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; Scaffold002 rebuild exon 1602752 1603081 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; Scaffold002 rebuild exon 1603232 1603457 . - . gene_id "RvY_03955"; transcript_id "RvY_03955.1"; Scaffold002 rebuild transcript 1603853 1605796 . + . gene_id "RvY_03956"; transcript_id "RvY_03956.1"; gene_name "gatA"; annotation "putative Glutamyl-tRNA(Gln) amidotransferase subunit A"; Pfam "[Amidase]"; CDD "aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed"; EC "EC6.3.5.-|EC6.3.5.6|EC6.3.5.7"; KO "K02433"; similar_genes "GATA_PROM3(e-value:1.0e-42;bit-score:171.0)"; Scaffold002 rebuild exon 1603853 1604342 . + . gene_id "RvY_03956"; transcript_id "RvY_03956.1"; Scaffold002 rebuild exon 1604652 1604888 . + . gene_id "RvY_03956"; transcript_id "RvY_03956.1"; Scaffold002 rebuild exon 1604966 1605313 . + . gene_id "RvY_03956"; transcript_id "RvY_03956.1"; Scaffold002 rebuild exon 1605375 1605796 . + . gene_id "RvY_03956"; transcript_id "RvY_03956.1"; Scaffold002 rebuild transcript 1606909 1607921 . - . gene_id "RvY_03957"; transcript_id "RvY_03957.1"; product "CAHS8"; annotation "CAHS8 | hypothetical protein."; Scaffold002 rebuild exon 1606909 1607001 . - . gene_id "RvY_03957"; transcript_id "RvY_03957.1"; Scaffold002 rebuild exon 1607067 1607132 . - . gene_id "RvY_03957"; transcript_id "RvY_03957.1"; Scaffold002 rebuild exon 1607211 1607263 . - . gene_id "RvY_03957"; transcript_id "RvY_03957.1"; Scaffold002 rebuild exon 1607465 1607921 . - . gene_id "RvY_03957"; transcript_id "RvY_03957.1"; Scaffold002 rebuild transcript 1612220 1612711 . - . gene_id "RvY_03958"; transcript_id "RvY_03958.1"; annotation "hypothetical protein."; similar_genes "GRP1_PETHY(e-value:7.0e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1612220 1612615 . - . gene_id "RvY_03958"; transcript_id "RvY_03958.1"; Scaffold002 rebuild exon 1612697 1612711 . - . gene_id "RvY_03958"; transcript_id "RvY_03958.1"; Scaffold002 rebuild transcript 1614128 1615673 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; gene_name "RP-S4e"; annotation "40S ribosomal protein S4"; Pfam "[S4]|[Ribosomal_S4e] Ribosomal family S4e|[RS4NT] RS4NT (NUC023) domain"; CDD "40S ribosomal protein S4; Provisional"; KO "K02987"; similar_genes "RS4_SPOFR(e-value:8.5e-125;bit-score:444.0)"; Scaffold002 rebuild exon 1614128 1614260 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; Scaffold002 rebuild exon 1614485 1614786 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; Scaffold002 rebuild exon 1615042 1615139 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; Scaffold002 rebuild exon 1615198 1615378 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; Scaffold002 rebuild exon 1615474 1615551 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; Scaffold002 rebuild exon 1615671 1615673 . - . gene_id "RvY_03959"; transcript_id "RvY_03959.1"; Scaffold002 rebuild transcript 1616221 1618039 . + . gene_id "RvY_03960"; transcript_id "RvY_03960.1"; gene_name "trxA"; annotation "thioredoxin 1"; Pfam "[Thioredoxin]|[PUL]"; KO "K03671"; similar_genes "THIO_PENCH(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 1616221 1616315 . + . gene_id "RvY_03960"; transcript_id "RvY_03960.1"; Scaffold002 rebuild exon 1616383 1616479 . + . gene_id "RvY_03960"; transcript_id "RvY_03960.1"; Scaffold002 rebuild exon 1616664 1617048 . + . gene_id "RvY_03960"; transcript_id "RvY_03960.1"; Scaffold002 rebuild exon 1617122 1617259 . + . gene_id "RvY_03960"; transcript_id "RvY_03960.1"; Scaffold002 rebuild exon 1617354 1618039 . + . gene_id "RvY_03960"; transcript_id "RvY_03960.1"; Scaffold002 rebuild transcript 1618477 1619790 . - . gene_id "RvY_03961"; transcript_id "RvY_03961.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold002 rebuild exon 1618477 1619165 . - . gene_id "RvY_03961"; transcript_id "RvY_03961.1"; Scaffold002 rebuild exon 1619508 1619790 . - . gene_id "RvY_03961"; transcript_id "RvY_03961.1"; Scaffold002 rebuild transcript 1631839 1632057 . + . gene_id "RvY_03962"; transcript_id "RvY_03962.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1631839 1632057 . + . gene_id "RvY_03962"; transcript_id "RvY_03962.1"; Scaffold002 rebuild transcript 1633838 1634200 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1633838 1634200 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.1"; Scaffold002 rebuild transcript 1633838 1634452 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1633838 1633867 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.2"; Scaffold002 rebuild exon 1633985 1634107 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.2"; Scaffold002 rebuild exon 1634270 1634452 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.2"; Scaffold002 rebuild transcript 1634250 1634549 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1634250 1634549 . + . gene_id "RvY_03963"; transcript_id "RvY_03963.3"; Scaffold002 rebuild transcript 1635017 1636205 . - . gene_id "RvY_03964"; transcript_id "RvY_03964.1"; gene_name "RNF1_2"; annotation "E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10695"; similar_genes "RING1_GORGO(e-value:4.4e-22;bit-score:102.0)"; Scaffold002 rebuild exon 1635017 1635261 . - . gene_id "RvY_03964"; transcript_id "RvY_03964.1"; Scaffold002 rebuild exon 1635394 1635841 . - . gene_id "RvY_03964"; transcript_id "RvY_03964.1"; Scaffold002 rebuild exon 1635978 1636205 . - . gene_id "RvY_03964"; transcript_id "RvY_03964.1"; Scaffold002 rebuild transcript 1637729 1641398 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; gene_name "HELICc"; annotation "ATP-dependent RNA helicase SUPV3L1, mitochondrial"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[SUV3_C] Mitochondrial degradasome RNA helicase subunit C terminal"; CDD "Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process"; EC "EC3.6.1.-"; similar_genes "SUV3_DANRE(e-value:8.5e-161;bit-score:563.0)"; Scaffold002 rebuild exon 1637729 1638107 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1638393 1638808 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1639018 1639129 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1639211 1639288 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1639364 1639507 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1639581 1639709 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1639794 1639887 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1640037 1640256 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1640331 1640411 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1640554 1640733 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild exon 1640940 1641398 . + . gene_id "RvY_03965"; transcript_id "RvY_03965.1"; Scaffold002 rebuild transcript 1641709 1642514 . - . gene_id "RvY_03966"; transcript_id "RvY_03966.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1641709 1641873 . - . gene_id "RvY_03966"; transcript_id "RvY_03966.1"; Scaffold002 rebuild exon 1642239 1642450 . - . gene_id "RvY_03966"; transcript_id "RvY_03966.1"; Scaffold002 rebuild exon 1642508 1642514 . - . gene_id "RvY_03966"; transcript_id "RvY_03966.1"; Scaffold002 rebuild transcript 1643131 1644090 . + . gene_id "RvY_03967"; transcript_id "RvY_03967.1"; gene_name "HSPB1"; annotation "heat shock 27kDa protein 1"; Pfam "[HSP20] Hsp20/alpha crystallin family"; CDD "Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally Scaffold002 rebuild exon 1643131 1643253 . + . gene_id "RvY_03967"; transcript_id "RvY_03967.1"; Scaffold002 rebuild exon 1643328 1643514 . + . gene_id "RvY_03967"; transcript_id "RvY_03967.1"; Scaffold002 rebuild exon 1643606 1643661 . + . gene_id "RvY_03967"; transcript_id "RvY_03967.1"; Scaffold002 rebuild exon 1643727 1643775 . + . gene_id "RvY_03967"; transcript_id "RvY_03967.1"; Scaffold002 rebuild exon 1643849 1644090 . + . gene_id "RvY_03967"; transcript_id "RvY_03967.1"; Scaffold002 rebuild transcript 1647970 1650509 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; gene_name "CTBP"; annotation "C-terminal-binding protein"; Pfam "[2-Hacid_dh_C] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain|[2-Hacid_dh] D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain"; CDD "Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]"; KO "K04496"; similar_genes "CTBP_DROME(e-value:6.5e-161;bit-score:564.0)"; Scaffold002 rebuild exon 1647970 1648066 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild exon 1648154 1648314 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild exon 1648450 1648801 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild exon 1649082 1649306 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild exon 1649363 1649494 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild exon 1649552 1649734 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild exon 1650196 1650509 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.1"; Scaffold002 rebuild transcript 1647828 1649745 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; gene_name "CTBP"; annotation "C-terminal-binding protein"; Pfam "[2-Hacid_dh_C] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain|[2-Hacid_dh] D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain"; CDD "Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]"; KO "K04496"; similar_genes "CTBP_DROME(e-value:6.5e-161;bit-score:564.0)"; Scaffold002 rebuild exon 1647828 1647899 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild exon 1647961 1648066 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild exon 1648154 1648314 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild exon 1648450 1648801 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild exon 1649082 1649306 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild exon 1649363 1649494 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild exon 1649552 1649745 . + . gene_id "RvY_03968"; transcript_id "RvY_03968.2"; Scaffold002 rebuild transcript 1652359 1653356 . + . gene_id "RvY_03969"; transcript_id "RvY_03969.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1652359 1652538 . + . gene_id "RvY_03969"; transcript_id "RvY_03969.1"; Scaffold002 rebuild exon 1653213 1653356 . + . gene_id "RvY_03969"; transcript_id "RvY_03969.1"; Scaffold002 rebuild transcript 1655506 1655691 . + . gene_id "RvY_03970"; transcript_id "RvY_03970.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1655506 1655691 . + . gene_id "RvY_03970"; transcript_id "RvY_03970.1"; Scaffold002 rebuild transcript 1655703 1655939 . + . gene_id "RvY_03971"; transcript_id "RvY_03971.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1655703 1655939 . + . gene_id "RvY_03971"; transcript_id "RvY_03971.1"; Scaffold002 rebuild transcript 1656395 1656571 . - . gene_id "RvY_03972"; transcript_id "RvY_03972.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1656395 1656571 . - . gene_id "RvY_03972"; transcript_id "RvY_03972.1"; Scaffold002 rebuild transcript 1657627 1658211 . + . gene_id "RvY_03973"; transcript_id "RvY_03973.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1657627 1657772 . + . gene_id "RvY_03973"; transcript_id "RvY_03973.1"; Scaffold002 rebuild exon 1658015 1658162 . + . gene_id "RvY_03973"; transcript_id "RvY_03973.1"; Scaffold002 rebuild exon 1658188 1658211 . + . gene_id "RvY_03973"; transcript_id "RvY_03973.1"; Scaffold002 rebuild transcript 1658270 1659452 . + . gene_id "RvY_03974"; transcript_id "RvY_03974.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 1658270 1658402 . + . gene_id "RvY_03974"; transcript_id "RvY_03974.1"; Scaffold002 rebuild exon 1658528 1658933 . + . gene_id "RvY_03974"; transcript_id "RvY_03974.1"; Scaffold002 rebuild exon 1659008 1659452 . + . gene_id "RvY_03974"; transcript_id "RvY_03974.1"; Scaffold002 rebuild transcript 1661403 1661927 . - . gene_id "RvY_03975"; transcript_id "RvY_03975.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1661403 1661927 . - . gene_id "RvY_03975"; transcript_id "RvY_03975.1"; Scaffold002 rebuild transcript 1661406 1661762 . - . gene_id "RvY_03975"; transcript_id "RvY_03975.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1661406 1661762 . - . gene_id "RvY_03975"; transcript_id "RvY_03975.2"; Scaffold002 rebuild transcript 1662336 1662835 . - . gene_id "RvY_03976"; transcript_id "RvY_03976.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1662336 1662622 . - . gene_id "RvY_03976"; transcript_id "RvY_03976.1"; Scaffold002 rebuild exon 1662766 1662835 . - . gene_id "RvY_03976"; transcript_id "RvY_03976.1"; Scaffold002 rebuild transcript 1667618 1670319 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; gene_name "truA"; annotation "tRNA pseudouridine synthase A [EC:5.4.99.12]"; Pfam "[PseudoU_synth_1] tRNA pseudouridine synthase"; CDD "PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U2 snRNA and psi32 in tRNAs are highly phylogenetically conserved. Psi 26,27,28,34,35,36,65 and 67 in tRNAs are less highly conserved. Mouse Pus1p regulates nuclear receptor activity through pseudouridylation of Steroid Receptor RNA Activator. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA)."; EC "EC5.4.99.12"; KO "K06173"; similar_genes "TRUA_RAT(e-value:1.3e-08;bit-score:58.0)"; Scaffold002 rebuild exon 1667618 1667849 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1668045 1668291 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1668367 1668406 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1668507 1668621 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1668705 1668912 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1668984 1669052 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1669200 1669366 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1669448 1669527 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild exon 1669774 1670319 . - . gene_id "RvY_03977"; transcript_id "RvY_03977.1"; Scaffold002 rebuild transcript 1672884 1675389 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1672884 1673205 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild exon 1673265 1673783 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild exon 1674052 1674230 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild exon 1674304 1674477 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild exon 1674558 1674599 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild exon 1674663 1674834 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild exon 1675106 1675389 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.1"; Scaffold002 rebuild transcript 1672773 1675389 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1672773 1672778 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1672920 1673205 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1673265 1673783 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1674052 1674230 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1674304 1674477 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1674558 1674599 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1674663 1674834 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild exon 1675106 1675389 . + . gene_id "RvY_03978"; transcript_id "RvY_03978.2"; Scaffold002 rebuild transcript 1676972 1677321 . - . gene_id "RvY_03979"; transcript_id "RvY_03979.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1676972 1677172 . - . gene_id "RvY_03979"; transcript_id "RvY_03979.1"; Scaffold002 rebuild exon 1677274 1677321 . - . gene_id "RvY_03979"; transcript_id "RvY_03979.1"; Scaffold002 rebuild transcript 1677383 1677904 . - . gene_id "RvY_03980"; transcript_id "RvY_03980.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1677383 1677567 . - . gene_id "RvY_03980"; transcript_id "RvY_03980.1"; Scaffold002 rebuild exon 1677808 1677904 . - . gene_id "RvY_03980"; transcript_id "RvY_03980.1"; Scaffold002 rebuild transcript 1678576 1679600 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1678576 1678880 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.1"; Scaffold002 rebuild exon 1678951 1679250 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.1"; Scaffold002 rebuild exon 1679420 1679600 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.1"; Scaffold002 rebuild transcript 1678998 1679712 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1678998 1679250 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.2"; Scaffold002 rebuild exon 1679420 1679712 . - . gene_id "RvY_03981"; transcript_id "RvY_03981.2"; Scaffold002 rebuild transcript 1681063 1683953 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 1681063 1681447 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild exon 1681525 1681588 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild exon 1681654 1681870 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild exon 1682289 1682507 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild exon 1682570 1682803 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild exon 1683544 1683788 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild exon 1683860 1683953 . + . gene_id "RvY_03982"; transcript_id "RvY_03982.1"; Scaffold002 rebuild transcript 1686274 1687989 . - . gene_id "RvY_03983"; transcript_id "RvY_03983.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1686274 1686629 . - . gene_id "RvY_03983"; transcript_id "RvY_03983.1"; Scaffold002 rebuild exon 1686745 1686905 . - . gene_id "RvY_03983"; transcript_id "RvY_03983.1"; Scaffold002 rebuild exon 1687139 1687311 . - . gene_id "RvY_03983"; transcript_id "RvY_03983.1"; Scaffold002 rebuild exon 1687428 1687600 . - . gene_id "RvY_03983"; transcript_id "RvY_03983.1"; Scaffold002 rebuild exon 1687920 1687989 . - . gene_id "RvY_03983"; transcript_id "RvY_03983.1"; Scaffold002 rebuild transcript 1689895 1691705 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; gene_name "EKI1"; annotation "ethanolamine kinase [EC:2.7.1.82]"; Pfam "[APH] Phosphotransferase enzyme family|[Choline_kinase] Choline/ethanolamine kinase"; CDD "Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryonic development. It may also have a role in testicular maturation."; EC "EC2.7.1.82"; KO "K00894"; similar_genes "EKIB_DICDI(e-value:1.0e-10;bit-score:65.0)"; Scaffold002 rebuild exon 1689895 1689952 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild exon 1690007 1690244 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild exon 1690313 1690396 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild exon 1690484 1690629 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild exon 1690690 1690830 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild exon 1691098 1691357 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild exon 1691511 1691705 . - . gene_id "RvY_03984"; transcript_id "RvY_03984.1"; Scaffold002 rebuild transcript 1694224 1695028 . - . gene_id "RvY_03985"; transcript_id "RvY_03985.1"; gene_name "RAP2B"; annotation "Ras-related protein Rap-2b"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; KO "K07838"; similar_genes "RAP2B_HUMAN(e-value:2.1e-66;bit-score:250.0)"; Scaffold002 rebuild exon 1694224 1694543 . - . gene_id "RvY_03985"; transcript_id "RvY_03985.1"; Scaffold002 rebuild exon 1694597 1694713 . - . gene_id "RvY_03985"; transcript_id "RvY_03985.1"; Scaffold002 rebuild exon 1694917 1695028 . - . gene_id "RvY_03985"; transcript_id "RvY_03985.1"; Scaffold002 rebuild transcript 1697694 1699469 . + . gene_id "RvY_03986"; transcript_id "RvY_03986.1"; gene_name "COG5415"; annotation "hypothetical protein."; Pfam "[DUF2296] Predicted integral membrane metal-binding protein (DUF2296)"; CDD "Predicted integral membrane metal-binding protein [General function prediction only]"; similar_genes "LNP1_CAEBR(e-value:2.0e-09;bit-score:60.0)"; Scaffold002 rebuild exon 1697694 1697714 . + . gene_id "RvY_03986"; transcript_id "RvY_03986.1"; Scaffold002 rebuild exon 1697814 1698055 . + . gene_id "RvY_03986"; transcript_id "RvY_03986.1"; Scaffold002 rebuild exon 1698282 1698808 . + . gene_id "RvY_03986"; transcript_id "RvY_03986.1"; Scaffold002 rebuild exon 1699021 1699469 . + . gene_id "RvY_03986"; transcript_id "RvY_03986.1"; Scaffold002 rebuild transcript 1700276 1701543 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.1"; gene_name "(1)Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1700276 1700301 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.1"; Scaffold002 rebuild exon 1700456 1700480 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.1"; Scaffold002 rebuild exon 1700556 1700768 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.1"; Scaffold002 rebuild exon 1701004 1701543 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.1"; Scaffold002 rebuild transcript 1700968 1701543 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.2"; gene_name "(1)Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1700968 1701543 . - . gene_id "RvY_03987"; transcript_id "RvY_03987.2"; Scaffold002 rebuild transcript 1702125 1706180 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; gene_name "RBM25"; annotation "RNA-binding protein 25"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[PWI]"; CDD "PWI, domain in splicing factors."; KO "K12822"; similar_genes "RBM25_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold002 rebuild exon 1702125 1702229 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1702294 1702440 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1702505 1702818 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1702909 1703189 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1703392 1703885 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1704476 1704556 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1704640 1704689 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1704749 1705030 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1705092 1705149 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1705207 1705330 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1705403 1705632 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1705876 1705958 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild exon 1706018 1706180 . - . gene_id "RvY_03988"; transcript_id "RvY_03988.1"; Scaffold002 rebuild transcript 1708161 1712421 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; gene_name "RGS3"; annotation "regulator of G-protein signalling 3"; Pfam "[RGS] Regulator of G protein signaling domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; KO "K07524"; Scaffold002 rebuild exon 1708161 1708358 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1708423 1708692 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1708750 1708945 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1709208 1709726 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1710085 1710572 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1710647 1710733 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1710801 1710947 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1711145 1711372 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1711436 1711691 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild exon 1712030 1712421 . + . gene_id "RvY_03989"; transcript_id "RvY_03989.1"; Scaffold002 rebuild transcript 1713237 1714926 . + . gene_id "RvY_03990"; transcript_id "RvY_03990.1"; gene_name "TNG2"; annotation "hypothetical protein."; Pfam "[ING] Inhibitor of growth proteins N-terminal histone-binding|[PHD] PHD-finger"; CDD "Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]"; Scaffold002 rebuild exon 1713237 1713577 . + . gene_id "RvY_03990"; transcript_id "RvY_03990.1"; Scaffold002 rebuild exon 1713805 1714253 . + . gene_id "RvY_03990"; transcript_id "RvY_03990.1"; Scaffold002 rebuild exon 1714511 1714926 . + . gene_id "RvY_03990"; transcript_id "RvY_03990.1"; Scaffold002 rebuild transcript 1716829 1718124 . - . gene_id "RvY_03991"; transcript_id "RvY_03991.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1716829 1716998 . - . gene_id "RvY_03991"; transcript_id "RvY_03991.1"; Scaffold002 rebuild exon 1717115 1717488 . - . gene_id "RvY_03991"; transcript_id "RvY_03991.1"; Scaffold002 rebuild exon 1717624 1717940 . - . gene_id "RvY_03991"; transcript_id "RvY_03991.1"; Scaffold002 rebuild exon 1718044 1718124 . - . gene_id "RvY_03991"; transcript_id "RvY_03991.1"; Scaffold002 rebuild transcript 1718197 1719329 . - . gene_id "RvY_03992"; transcript_id "RvY_03992.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1718197 1718537 . - . gene_id "RvY_03992"; transcript_id "RvY_03992.1"; Scaffold002 rebuild exon 1718684 1719148 . - . gene_id "RvY_03992"; transcript_id "RvY_03992.1"; Scaffold002 rebuild exon 1719275 1719329 . - . gene_id "RvY_03992"; transcript_id "RvY_03992.1"; Scaffold002 rebuild transcript 1720078 1721410 . + . gene_id "RvY_03993"; transcript_id "RvY_03993.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold002 rebuild exon 1720078 1720518 . + . gene_id "RvY_03993"; transcript_id "RvY_03993.1"; Scaffold002 rebuild exon 1720716 1720995 . + . gene_id "RvY_03993"; transcript_id "RvY_03993.1"; Scaffold002 rebuild exon 1721070 1721410 . + . gene_id "RvY_03993"; transcript_id "RvY_03993.1"; Scaffold002 rebuild transcript 1721811 1722413 . + . gene_id "RvY_03994"; transcript_id "RvY_03994.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 1721811 1721859 . + . gene_id "RvY_03994"; transcript_id "RvY_03994.1"; Scaffold002 rebuild exon 1721989 1722413 . + . gene_id "RvY_03994"; transcript_id "RvY_03994.1"; Scaffold002 rebuild transcript 1723925 1726071 . - . gene_id "RvY_03995"; transcript_id "RvY_03995.1"; gene_name "TFIID4"; annotation "transcription initiation factor TFIID subunit D4"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K03130"; similar_genes "TAF5L_HUMAN(e-value:4.2e-16;bit-score:83.0)"; Scaffold002 rebuild exon 1723925 1724324 . - . gene_id "RvY_03995"; transcript_id "RvY_03995.1"; Scaffold002 rebuild exon 1724628 1725258 . - . gene_id "RvY_03995"; transcript_id "RvY_03995.1"; Scaffold002 rebuild exon 1725582 1726071 . - . gene_id "RvY_03995"; transcript_id "RvY_03995.1"; Scaffold002 rebuild transcript 1727000 1730784 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; gene_name "ahcY"; annotation "Putative adenosylhomocysteinase 3"; Pfam "[AdoHcyase_NAD] S-adenosyl-L-homocysteine hydrolase, NAD binding domain|[2-Hacid_dh_C] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain|[IlvN] Acetohydroxy acid isomeroreductase, catalytic domain|[NAD_binding_7] Putative NAD(P)-binding|[AdoHcyase] S-adenosyl-L-homocysteine hydrolase"; CDD "S-adenosyl-L-homocysteine hydrolase; Provisional"; EC "EC3.3.1.1"; KO "K01251"; similar_genes "SAHH3_MOUSE(e-value:1.7e-180;bit-score:629.0)"; Scaffold002 rebuild exon 1727000 1727224 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1728098 1728206 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1728537 1728787 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1728850 1729047 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1729394 1729617 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1729687 1729750 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1729870 1729958 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1730032 1730102 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1730170 1730363 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1730430 1730577 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild exon 1730657 1730784 . + . gene_id "RvY_03996"; transcript_id "RvY_03996.1"; Scaffold002 rebuild transcript 1731345 1733414 . + . gene_id "RvY_03997"; transcript_id "RvY_03997.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 1731345 1731646 . + . gene_id "RvY_03997"; transcript_id "RvY_03997.1"; Scaffold002 rebuild exon 1731858 1732356 . + . gene_id "RvY_03997"; transcript_id "RvY_03997.1"; Scaffold002 rebuild exon 1732761 1733414 . + . gene_id "RvY_03997"; transcript_id "RvY_03997.1"; Scaffold002 rebuild transcript 1734226 1736539 . + . gene_id "RvY_03998"; transcript_id "RvY_03998.1"; gene_name "TrkA"; annotation "hypothetical protein."; Pfam "[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[FMO-like] Flavin-binding monooxygenase-like|[K_oxygenase] L-lysine 6-monooxygenase (NADPH-requiring)|[NAD_binding_9] FAD-NAD(P)-binding|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]"; Scaffold002 rebuild exon 1734226 1734645 . + . gene_id "RvY_03998"; transcript_id "RvY_03998.1"; Scaffold002 rebuild exon 1734745 1734802 . + . gene_id "RvY_03998"; transcript_id "RvY_03998.1"; Scaffold002 rebuild exon 1735534 1735621 . + . gene_id "RvY_03998"; transcript_id "RvY_03998.1"; Scaffold002 rebuild exon 1735702 1736539 . + . gene_id "RvY_03998"; transcript_id "RvY_03998.1"; Scaffold002 rebuild transcript 1741756 1745475 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; gene_name "MRP_assoc_pro"; annotation "(1)putative Multidrug resistance-associated protein 1(2)Multidrug resistance-associated protein 1(3)putative Canalicular multispecific organic anion transporter 1"; Pfam "(3)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "(1)MRP1_CHICK(e-value:6.7e-42;bit-score:168.0)(2)MRP1_CHICK(e-value:1.9e-56;bit-score:217.0)(3)MRP2_RABIT(e-value:1.7e-42;bit-score:170.0)"; Scaffold002 rebuild exon 1741756 1741860 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1741936 1742397 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1742469 1742687 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1742762 1742893 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1742964 1743084 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1743150 1743283 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1743346 1743523 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1743585 1743869 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1743946 1744074 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1744152 1744213 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1744431 1744553 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1744618 1744761 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1744930 1745061 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1745207 1745383 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild exon 1745446 1745475 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.1"; Scaffold002 rebuild transcript 1739940 1742127 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; gene_name "MRP_assoc_pro"; annotation "(1)putative Multidrug resistance-associated protein 1(2)Multidrug resistance-associated protein 1(3)putative Canalicular multispecific organic anion transporter 1"; Pfam "(3)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "(1)MRP1_CHICK(e-value:6.7e-42;bit-score:168.0)(2)MRP1_CHICK(e-value:1.9e-56;bit-score:217.0)(3)MRP2_RABIT(e-value:1.7e-42;bit-score:170.0)"; Scaffold002 rebuild exon 1739940 1740283 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1740338 1740497 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1740582 1740823 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1740893 1741451 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1741530 1741584 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1741654 1741697 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1741774 1741860 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild exon 1741936 1742127 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.2"; Scaffold002 rebuild transcript 1738521 1740851 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; gene_name "MRP_assoc_pro"; annotation "(1)putative Multidrug resistance-associated protein 1(2)Multidrug resistance-associated protein 1(3)putative Canalicular multispecific organic anion transporter 1"; Pfam "(3)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "(1)MRP1_CHICK(e-value:6.7e-42;bit-score:168.0)(2)MRP1_CHICK(e-value:1.9e-56;bit-score:217.0)(3)MRP2_RABIT(e-value:1.7e-42;bit-score:170.0)"; Scaffold002 rebuild exon 1738521 1738632 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1738703 1738782 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1738849 1738963 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1739029 1739195 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1739270 1739428 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1739517 1739622 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1739684 1739826 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1739967 1740105 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1740175 1740283 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1740338 1740497 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild exon 1740582 1740851 . - . gene_id "RvY_03999"; transcript_id "RvY_03999.3"; Scaffold002 rebuild transcript 1750869 1751735 . + . gene_id "RvY_04000"; transcript_id "RvY_04000.1"; gene_name "PstS"; annotation "hypothetical protein."; Pfam "[PBP_like_2] PBP superfamily domain"; CDD "ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]"; Scaffold002 rebuild exon 1750869 1751735 . + . gene_id "RvY_04000"; transcript_id "RvY_04000.1"; Scaffold002 rebuild transcript 1751893 1752258 . + . gene_id "RvY_04001"; transcript_id "RvY_04001.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1751893 1752258 . + . gene_id "RvY_04001"; transcript_id "RvY_04001.1"; Scaffold002 rebuild transcript 1752572 1756407 . + . gene_id "RvY_04002"; transcript_id "RvY_04002.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold002 rebuild exon 1752572 1752902 . + . gene_id "RvY_04002"; transcript_id "RvY_04002.1"; Scaffold002 rebuild exon 1752974 1753340 . + . gene_id "RvY_04002"; transcript_id "RvY_04002.1"; Scaffold002 rebuild exon 1753573 1754284 . + . gene_id "RvY_04002"; transcript_id "RvY_04002.1"; Scaffold002 rebuild exon 1754632 1755023 . + . gene_id "RvY_04002"; transcript_id "RvY_04002.1"; Scaffold002 rebuild exon 1755144 1756407 . + . gene_id "RvY_04002"; transcript_id "RvY_04002.1"; Scaffold002 rebuild transcript 1757419 1757670 . + . gene_id "RvY_04003"; transcript_id "RvY_04003.1"; gene_name "(2)globin"; annotation "hypothetical protein."; CDD "(2)Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold002 rebuild exon 1757419 1757670 . + . gene_id "RvY_04003"; transcript_id "RvY_04003.1"; Scaffold002 rebuild transcript 1757419 1757788 . + . gene_id "RvY_04003"; transcript_id "RvY_04003.2"; gene_name "(2)globin"; annotation "hypothetical protein."; CDD "(2)Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold002 rebuild exon 1757419 1757487 . + . gene_id "RvY_04003"; transcript_id "RvY_04003.2"; Scaffold002 rebuild exon 1757609 1757788 . + . gene_id "RvY_04003"; transcript_id "RvY_04003.2"; Scaffold002 rebuild transcript 1757952 1765070 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; gene_name "(1)NOS1(2)DNOS"; annotation "putative Nitric oxide synthase, inducible"; Pfam "[NO_synthase] Nitric oxide synthase, oxygenase domain|(1)[NAD_binding_1] Oxidoreductase NAD-binding domain|[Flavodoxin_1] Flavodoxin|(1)[FAD_binding_1] FAD binding domain"; CDD "Nitric oxide synthase (NOS) eukaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain, which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOS's also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN."; EC "EC1.14.13.39"; KO "(1)K13240(2)K13253"; similar_genes "NOS2_BOVIN(e-value:2.7e-47;bit-score:186.0)"; Scaffold002 rebuild exon 1757952 1758002 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1758072 1758260 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1758318 1758576 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1758966 1759719 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1760471 1760811 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1761047 1761157 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1761244 1761467 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1761551 1761694 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1761781 1761954 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1762015 1762044 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1762129 1762203 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1762274 1762440 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1762510 1762616 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1762675 1762814 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1763115 1763351 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1763413 1763575 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1763794 1763933 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1764017 1764333 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild exon 1764518 1765070 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.1"; Scaffold002 rebuild transcript 1760463 1765070 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; gene_name "(1)NOS1(2)DNOS"; annotation "putative Nitric oxide synthase, inducible"; Pfam "[NO_synthase] Nitric oxide synthase, oxygenase domain|(1)[NAD_binding_1] Oxidoreductase NAD-binding domain|[Flavodoxin_1] Flavodoxin|(1)[FAD_binding_1] FAD binding domain"; CDD "Nitric oxide synthase (NOS) eukaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain, which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOS's also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN."; EC "EC1.14.13.39"; KO "(1)K13240(2)K13253"; similar_genes "NOS2_BOVIN(e-value:2.7e-47;bit-score:186.0)"; Scaffold002 rebuild exon 1760463 1760811 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1761047 1761157 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1761244 1761467 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1761551 1761694 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1761781 1761954 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1762015 1762044 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1762129 1762203 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1762274 1762440 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1762510 1762616 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1762675 1762814 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1763115 1763351 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1763413 1763575 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1763794 1763933 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1764017 1764333 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild exon 1764518 1765070 . - . gene_id "RvY_04004"; transcript_id "RvY_04004.2"; Scaffold002 rebuild transcript 1765671 1765985 . + . gene_id "RvY_04005"; transcript_id "RvY_04005.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1765671 1765985 . + . gene_id "RvY_04005"; transcript_id "RvY_04005.1"; Scaffold002 framed transcript 1768416 1770244 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.1"; annotation "hypothetical protein."; Scaffold002 framed exon 1768416 1768657 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.1"; Scaffold002 framed exon 1768747 1769575 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.1"; Scaffold002 framed exon 1769819 1769974 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.1"; Scaffold002 framed exon 1770086 1770244 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.1"; Scaffold002 rebuild transcript 1768772 1770244 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1768772 1769575 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.2"; Scaffold002 rebuild exon 1769819 1769974 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.2"; Scaffold002 rebuild exon 1770086 1770244 . + . gene_id "RvY_04006"; transcript_id "RvY_04006.2"; Scaffold002 rebuild transcript 1771060 1772067 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 1771060 1771221 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.1"; Scaffold002 rebuild exon 1771428 1771666 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.1"; Scaffold002 rebuild exon 1771719 1771837 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.1"; Scaffold002 rebuild exon 1771916 1772067 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.1"; Scaffold002 rebuild transcript 1771060 1771928 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.2"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 1771060 1771221 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.2"; Scaffold002 rebuild exon 1771428 1771837 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.2"; Scaffold002 rebuild exon 1771916 1771928 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.2"; Scaffold002 rebuild transcript 1770539 1771076 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.3"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 1770539 1770723 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.3"; Scaffold002 rebuild exon 1770800 1771076 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.3"; Scaffold002 rebuild transcript 1770569 1771076 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.4"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 1770569 1770723 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.4"; Scaffold002 rebuild exon 1770800 1771076 . - . gene_id "RvY_04007"; transcript_id "RvY_04007.4"; Scaffold002 rebuild transcript 1772634 1774549 . - . gene_id "RvY_04008"; transcript_id "RvY_04008.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 1772634 1773254 . - . gene_id "RvY_04008"; transcript_id "RvY_04008.1"; Scaffold002 rebuild exon 1773531 1774014 . - . gene_id "RvY_04008"; transcript_id "RvY_04008.1"; Scaffold002 rebuild exon 1774200 1774549 . - . gene_id "RvY_04008"; transcript_id "RvY_04008.1"; Scaffold002 rebuild transcript 1774938 1776759 . - . gene_id "RvY_04009"; transcript_id "RvY_04009.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 1774938 1775519 . - . gene_id "RvY_04009"; transcript_id "RvY_04009.1"; Scaffold002 rebuild exon 1775831 1776314 . - . gene_id "RvY_04009"; transcript_id "RvY_04009.1"; Scaffold002 rebuild exon 1776395 1776759 . - . gene_id "RvY_04009"; transcript_id "RvY_04009.1"; Scaffold002 rebuild transcript 1776720 1776914 . + . gene_id "RvY_04010"; transcript_id "RvY_04010.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1776720 1776914 . + . gene_id "RvY_04010"; transcript_id "RvY_04010.1"; Scaffold002 rebuild transcript 1778642 1779860 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 1778642 1778792 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; Scaffold002 rebuild exon 1778866 1779010 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; Scaffold002 rebuild exon 1779167 1779343 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; Scaffold002 rebuild exon 1779419 1779468 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; Scaffold002 rebuild exon 1779534 1779767 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; Scaffold002 rebuild exon 1779853 1779860 . + . gene_id "RvY_04011"; transcript_id "RvY_04011.1"; Scaffold002 rebuild transcript 1780981 1782045 . + . gene_id "RvY_04012"; transcript_id "RvY_04012.1"; annotation "hypothetical protein."; Pfam "[Synaphin] Synaphin protein"; similar_genes "CPLX1_CAEBR(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 1780981 1781202 . + . gene_id "RvY_04012"; transcript_id "RvY_04012.1"; Scaffold002 rebuild exon 1781741 1781879 . + . gene_id "RvY_04012"; transcript_id "RvY_04012.1"; Scaffold002 rebuild exon 1781963 1782045 . + . gene_id "RvY_04012"; transcript_id "RvY_04012.1"; Scaffold002 rebuild transcript 1782533 1784566 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1782533 1782615 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1782695 1782745 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1782809 1782952 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1783190 1783441 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1783506 1783697 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1783757 1783831 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1784039 1784108 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild exon 1784189 1784566 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.1"; Scaffold002 rebuild transcript 1782616 1784566 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1782616 1782626 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1782695 1782745 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1782809 1782952 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1783190 1783441 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1783506 1783697 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1783757 1783831 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1784039 1784108 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild exon 1784189 1784566 . - . gene_id "RvY_04013"; transcript_id "RvY_04013.2"; Scaffold002 rebuild transcript 1785443 1785682 . - . gene_id "RvY_04014"; transcript_id "RvY_04014.1"; annotation "hypothetical protein."; Pfam "[CCAP] Arthropod cardioacceleratory peptide 2a"; Scaffold002 rebuild exon 1785443 1785682 . - . gene_id "RvY_04014"; transcript_id "RvY_04014.1"; Scaffold002 rebuild transcript 1786202 1788665 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; gene_name "FBXW4"; annotation "F-box and WD-40 domain protein 4"; Pfam "[WD40] WD domain, G-beta repeat|[F-box-like]"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K10262"; Scaffold002 rebuild exon 1786202 1786330 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild exon 1786404 1786550 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild exon 1786712 1786842 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild exon 1787085 1787291 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild exon 1787427 1787578 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild exon 1787646 1788005 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild exon 1788436 1788665 . - . gene_id "RvY_04015"; transcript_id "RvY_04015.1"; Scaffold002 rebuild transcript 1789203 1789658 . - . gene_id "RvY_04016"; transcript_id "RvY_04016.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1789203 1789658 . - . gene_id "RvY_04016"; transcript_id "RvY_04016.1"; Scaffold002 rebuild transcript 1789010 1789414 . - . gene_id "RvY_04016"; transcript_id "RvY_04016.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1789010 1789414 . - . gene_id "RvY_04016"; transcript_id "RvY_04016.2"; Scaffold002 rebuild transcript 1796836 1798150 . + . gene_id "RvY_04017"; transcript_id "RvY_04017.1"; gene_name "CDO1"; annotation "cysteine dioxygenase [EC:1.13.11.20]"; Pfam "[CDO_I] Cysteine dioxygenase type I"; EC "EC1.13.11.20"; KO "K00456"; similar_genes "CDO_CAEBR(e-value:1.2e-13;bit-score:74.0)"; Scaffold002 rebuild exon 1796836 1796923 . + . gene_id "RvY_04017"; transcript_id "RvY_04017.1"; Scaffold002 rebuild exon 1797048 1797246 . + . gene_id "RvY_04017"; transcript_id "RvY_04017.1"; Scaffold002 rebuild exon 1797305 1797543 . + . gene_id "RvY_04017"; transcript_id "RvY_04017.1"; Scaffold002 rebuild exon 1797927 1798150 . + . gene_id "RvY_04017"; transcript_id "RvY_04017.1"; Scaffold002 rebuild transcript 1799496 1800392 . - . gene_id "RvY_04018"; transcript_id "RvY_04018.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1799496 1800392 . - . gene_id "RvY_04018"; transcript_id "RvY_04018.1"; Scaffold002 rebuild transcript 1801813 1802478 . - . gene_id "RvY_04019"; transcript_id "RvY_04019.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 1801813 1802207 . - . gene_id "RvY_04019"; transcript_id "RvY_04019.1"; Scaffold002 rebuild exon 1802271 1802478 . - . gene_id "RvY_04019"; transcript_id "RvY_04019.1"; Scaffold002 rebuild transcript 1802543 1803741 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1802543 1802686 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; Scaffold002 rebuild exon 1802768 1802893 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; Scaffold002 rebuild exon 1802997 1803108 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; Scaffold002 rebuild exon 1803187 1803361 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; Scaffold002 rebuild exon 1803399 1803587 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; Scaffold002 rebuild exon 1803663 1803741 . - . gene_id "RvY_04020"; transcript_id "RvY_04020.1"; Scaffold002 rebuild transcript 1803831 1804492 . - . gene_id "RvY_04021"; transcript_id "RvY_04021.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1803831 1803897 . - . gene_id "RvY_04021"; transcript_id "RvY_04021.1"; Scaffold002 rebuild exon 1803981 1804492 . - . gene_id "RvY_04021"; transcript_id "RvY_04021.1"; Scaffold002 rebuild transcript 1805709 1805954 . + . gene_id "RvY_04022"; transcript_id "RvY_04022.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1805709 1805954 . + . gene_id "RvY_04022"; transcript_id "RvY_04022.1"; Scaffold002 rebuild transcript 1810410 1812016 . + . gene_id "RvY_04023"; transcript_id "RvY_04023.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "LRC58_XENLA(e-value:2.0e-11;bit-score:67.0)"; Scaffold002 rebuild exon 1810410 1811003 . + . gene_id "RvY_04023"; transcript_id "RvY_04023.1"; Scaffold002 rebuild exon 1811280 1811506 . + . gene_id "RvY_04023"; transcript_id "RvY_04023.1"; Scaffold002 rebuild exon 1811581 1811750 . + . gene_id "RvY_04023"; transcript_id "RvY_04023.1"; Scaffold002 rebuild exon 1811838 1812016 . + . gene_id "RvY_04023"; transcript_id "RvY_04023.1"; Scaffold002 rebuild transcript 1812599 1815597 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; gene_name "CYCc"; annotation "putative Atrial natriuretic peptide receptor 2"; Pfam "[NIT] Nitrate and nitrite sensing|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:1.4e-31;bit-score:134.0)"; Scaffold002 rebuild exon 1812599 1812694 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1812878 1813013 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1813087 1813121 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1813213 1813339 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1813400 1813448 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1813517 1813567 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1813658 1814314 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1814442 1814764 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild exon 1815053 1815597 . - . gene_id "RvY_04024"; transcript_id "RvY_04024.1"; Scaffold002 rebuild transcript 1815965 1817588 . - . gene_id "RvY_04025"; transcript_id "RvY_04025.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold002 rebuild exon 1815965 1816762 . - . gene_id "RvY_04025"; transcript_id "RvY_04025.1"; Scaffold002 rebuild exon 1817127 1817588 . - . gene_id "RvY_04025"; transcript_id "RvY_04025.1"; Scaffold002 rebuild transcript 1817854 1819270 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; gene_name "MhpC"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]"; EC "EC3.1.-.-"; similar_genes "SERHL_DANRE(e-value:1.0e-08;bit-score:58.0)"; Scaffold002 rebuild exon 1817854 1818022 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild exon 1818111 1818187 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild exon 1818280 1818317 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild exon 1818395 1818477 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild exon 1818545 1818732 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild exon 1818854 1818915 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild exon 1818988 1819270 . - . gene_id "RvY_04026"; transcript_id "RvY_04026.1"; Scaffold002 rebuild transcript 1819584 1822186 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07418"; similar_genes "CP2U1_HUMAN(e-value:4.3e-20;bit-score:96.0)"; Scaffold002 rebuild exon 1819584 1819761 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; Scaffold002 rebuild exon 1819950 1820192 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; Scaffold002 rebuild exon 1820472 1820996 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; Scaffold002 rebuild exon 1821225 1821401 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; Scaffold002 rebuild exon 1821681 1821944 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; Scaffold002 rebuild exon 1822002 1822186 . + . gene_id "RvY_04027"; transcript_id "RvY_04027.1"; Scaffold002 rebuild transcript 1824232 1826064 . + . gene_id "RvY_04028"; transcript_id "RvY_04028.1"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; EC "EC3.4.17.20"; similar_genes "CBPB2_RAT(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 1824232 1824829 . + . gene_id "RvY_04028"; transcript_id "RvY_04028.1"; Scaffold002 rebuild exon 1825439 1825644 . + . gene_id "RvY_04028"; transcript_id "RvY_04028.1"; Scaffold002 rebuild exon 1825706 1825790 . + . gene_id "RvY_04028"; transcript_id "RvY_04028.1"; Scaffold002 rebuild exon 1825859 1826064 . + . gene_id "RvY_04028"; transcript_id "RvY_04028.1"; Scaffold002 rebuild transcript 1826641 1827181 . + . gene_id "RvY_04029"; transcript_id "RvY_04029.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1826641 1826695 . + . gene_id "RvY_04029"; transcript_id "RvY_04029.1"; Scaffold002 rebuild exon 1827075 1827181 . + . gene_id "RvY_04029"; transcript_id "RvY_04029.1"; Scaffold002 rebuild transcript 1828718 1831474 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[p450] Cytochrome P450"; Scaffold002 rebuild exon 1828718 1828890 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild exon 1828955 1829022 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild exon 1829108 1829616 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild exon 1829754 1829975 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild exon 1830030 1830655 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild exon 1830740 1830867 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild exon 1831206 1831474 . + . gene_id "RvY_04030"; transcript_id "RvY_04030.1"; Scaffold002 rebuild transcript 1831506 1831658 . + . gene_id "RvY_04031"; transcript_id "RvY_04031.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1831506 1831658 . + . gene_id "RvY_04031"; transcript_id "RvY_04031.1"; Scaffold002 rebuild transcript 1832367 1832537 . - . gene_id "RvY_04032"; transcript_id "RvY_04032.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1832367 1832537 . - . gene_id "RvY_04032"; transcript_id "RvY_04032.1"; Scaffold002 rebuild transcript 1833001 1833674 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1833001 1833054 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.1"; Scaffold002 rebuild exon 1833153 1833269 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.1"; Scaffold002 rebuild exon 1833349 1833527 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.1"; Scaffold002 rebuild exon 1833590 1833674 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.1"; Scaffold002 rebuild transcript 1832922 1833406 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1832922 1833054 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.2"; Scaffold002 rebuild exon 1833153 1833406 . - . gene_id "RvY_04033"; transcript_id "RvY_04033.2"; Scaffold002 rebuild transcript 1835228 1835458 . - . gene_id "RvY_04034"; transcript_id "RvY_04034.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1835228 1835458 . - . gene_id "RvY_04034"; transcript_id "RvY_04034.1"; Scaffold002 rebuild transcript 1835459 1839502 . - . gene_id "RvY_04035"; transcript_id "RvY_04035.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[DDE_3] DDE superfamily endonuclease"; Scaffold002 rebuild exon 1835459 1835914 . - . gene_id "RvY_04035"; transcript_id "RvY_04035.1"; Scaffold002 rebuild exon 1836004 1836293 . - . gene_id "RvY_04035"; transcript_id "RvY_04035.1"; Scaffold002 rebuild exon 1838351 1839297 . - . gene_id "RvY_04035"; transcript_id "RvY_04035.1"; Scaffold002 rebuild exon 1839411 1839502 . - . gene_id "RvY_04035"; transcript_id "RvY_04035.1"; Scaffold002 rebuild transcript 1839629 1840194 . - . gene_id "RvY_04036"; transcript_id "RvY_04036.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1839629 1840005 . - . gene_id "RvY_04036"; transcript_id "RvY_04036.1"; Scaffold002 rebuild exon 1840077 1840194 . - . gene_id "RvY_04036"; transcript_id "RvY_04036.1"; Scaffold002 rebuild transcript 1841974 1842892 . - . gene_id "RvY_04037"; transcript_id "RvY_04037.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 1841974 1842335 . - . gene_id "RvY_04037"; transcript_id "RvY_04037.1"; Scaffold002 rebuild exon 1842673 1842892 . - . gene_id "RvY_04037"; transcript_id "RvY_04037.1"; Scaffold002 rebuild transcript 1844941 1845319 . - . gene_id "RvY_04038"; transcript_id "RvY_04038.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1844941 1845171 . - . gene_id "RvY_04038"; transcript_id "RvY_04038.1"; Scaffold002 rebuild exon 1845302 1845319 . - . gene_id "RvY_04038"; transcript_id "RvY_04038.1"; Scaffold002 rebuild transcript 1849466 1849901 . + . gene_id "RvY_04039"; transcript_id "RvY_04039.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1849466 1849501 . + . gene_id "RvY_04039"; transcript_id "RvY_04039.1"; Scaffold002 rebuild exon 1849579 1849627 . + . gene_id "RvY_04039"; transcript_id "RvY_04039.1"; Scaffold002 rebuild exon 1849687 1849901 . + . gene_id "RvY_04039"; transcript_id "RvY_04039.1"; Scaffold002 rebuild transcript 1850254 1850583 . - . gene_id "RvY_04040"; transcript_id "RvY_04040.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1850254 1850583 . - . gene_id "RvY_04040"; transcript_id "RvY_04040.1"; Scaffold002 rebuild transcript 1851985 1854239 . + . gene_id "RvY_04041"; transcript_id "RvY_04041.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[DUF1986]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 1851985 1852569 . + . gene_id "RvY_04041"; transcript_id "RvY_04041.1"; Scaffold002 rebuild exon 1852793 1852872 . + . gene_id "RvY_04041"; transcript_id "RvY_04041.1"; Scaffold002 rebuild exon 1853077 1853360 . + . gene_id "RvY_04041"; transcript_id "RvY_04041.1"; Scaffold002 rebuild exon 1853784 1854042 . + . gene_id "RvY_04041"; transcript_id "RvY_04041.1"; Scaffold002 rebuild exon 1854122 1854239 . + . gene_id "RvY_04041"; transcript_id "RvY_04041.1"; Scaffold002 rebuild transcript 1854493 1858586 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; gene_name "(1)PABP-1234(2)RRM_2"; annotation "putative Probable RNA-binding protein 19"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1)polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range.(2)RNA recognition motif."; KO "(1)K14787"; similar_genes "(1)RBM19_MOUSE(e-value:7.7e-26;bit-score:115.0)(2)RBM19_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 1854493 1854717 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1854798 1854903 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1855050 1855163 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1855232 1855428 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1855539 1855805 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1855926 1856126 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1856584 1856794 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1856865 1856995 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1857133 1857260 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1857349 1857624 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1857795 1858491 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild exon 1858551 1858586 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.1"; Scaffold002 rebuild transcript 1855530 1858586 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; gene_name "(1)PABP-1234(2)RRM_2"; annotation "putative Probable RNA-binding protein 19"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1)polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range.(2)RNA recognition motif."; KO "(1)K14787"; similar_genes "(1)RBM19_MOUSE(e-value:7.7e-26;bit-score:115.0)(2)RBM19_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 1855530 1855805 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1855926 1856126 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1856584 1856794 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1856865 1856995 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1857133 1857260 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1857349 1857624 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1857795 1858491 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild exon 1858551 1858586 . - . gene_id "RvY_04042"; transcript_id "RvY_04042.2"; Scaffold002 rebuild transcript 1856647 1856856 . + . gene_id "RvY_04043"; transcript_id "RvY_04043.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1856647 1856856 . + . gene_id "RvY_04043"; transcript_id "RvY_04043.1"; Scaffold002 rebuild transcript 1859043 1860640 . + . gene_id "RvY_04044"; transcript_id "RvY_04044.1"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; Scaffold002 rebuild exon 1859043 1859352 . + . gene_id "RvY_04044"; transcript_id "RvY_04044.1"; Scaffold002 rebuild exon 1860009 1860640 . + . gene_id "RvY_04044"; transcript_id "RvY_04044.1"; Scaffold002 rebuild transcript 1861024 1861665 . - . gene_id "RvY_04045"; transcript_id "RvY_04045.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1861024 1861097 . - . gene_id "RvY_04045"; transcript_id "RvY_04045.1"; Scaffold002 rebuild exon 1861338 1861665 . - . gene_id "RvY_04045"; transcript_id "RvY_04045.1"; Scaffold002 rebuild transcript 1864663 1867144 . + . gene_id "RvY_04046"; transcript_id "RvY_04046.1"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold002 rebuild exon 1864663 1865055 . + . gene_id "RvY_04046"; transcript_id "RvY_04046.1"; Scaffold002 rebuild exon 1865278 1865513 . + . gene_id "RvY_04046"; transcript_id "RvY_04046.1"; Scaffold002 rebuild exon 1865627 1865963 . + . gene_id "RvY_04046"; transcript_id "RvY_04046.1"; Scaffold002 rebuild exon 1866040 1866187 . + . gene_id "RvY_04046"; transcript_id "RvY_04046.1"; Scaffold002 rebuild exon 1866279 1867144 . + . gene_id "RvY_04046"; transcript_id "RvY_04046.1"; Scaffold002 rebuild transcript 1869683 1870531 . + . gene_id "RvY_04047"; transcript_id "RvY_04047.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1869683 1870156 . + . gene_id "RvY_04047"; transcript_id "RvY_04047.1"; Scaffold002 rebuild exon 1870472 1870531 . + . gene_id "RvY_04047"; transcript_id "RvY_04047.1"; Scaffold002 rebuild transcript 1881644 1882514 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1881644 1881713 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.1"; Scaffold002 rebuild exon 1881790 1881860 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.1"; Scaffold002 rebuild exon 1881969 1882272 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.1"; Scaffold002 rebuild exon 1882333 1882514 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.1"; Scaffold002 rebuild transcript 1881795 1882514 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1881795 1881860 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.2"; Scaffold002 rebuild exon 1881969 1882272 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.2"; Scaffold002 rebuild exon 1882333 1882514 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.2"; Scaffold002 rebuild transcript 1882062 1882514 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1882062 1882272 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.3"; Scaffold002 rebuild exon 1882333 1882514 . + . gene_id "RvY_04048"; transcript_id "RvY_04048.3"; Scaffold002 rebuild transcript 1882586 1884512 . - . gene_id "RvY_04049"; transcript_id "RvY_04049.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "GTR3_RAT(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 1882586 1883481 . - . gene_id "RvY_04049"; transcript_id "RvY_04049.1"; Scaffold002 rebuild exon 1883750 1884512 . - . gene_id "RvY_04049"; transcript_id "RvY_04049.1"; Scaffold002 rebuild transcript 1885211 1888758 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; gene_name "MMEL1"; annotation "putative Endothelin-converting enzyme 1"; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.71"; KO "K08635"; similar_genes "ECE1_HUMAN(e-value:4.0e-27;bit-score:119.0)"; Scaffold002 rebuild exon 1885211 1885397 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1885469 1885561 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1885687 1885767 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1885849 1885950 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1886043 1886102 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1886181 1886264 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1886335 1886492 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1886558 1886710 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1886775 1886843 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1886911 1887345 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1887550 1887648 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1887733 1887973 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1888042 1888161 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1888227 1888357 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild exon 1888420 1888758 . + . gene_id "RvY_04050"; transcript_id "RvY_04050.1"; Scaffold002 rebuild transcript 1888903 1891718 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; gene_name "aslA"; annotation "arylsulfatase [EC:3.1.6.1]"; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.1|EC3.1.6.12"; KO "K01130"; similar_genes "ARSB_RAT(e-value:2.0e-11;bit-score:67.0)"; Scaffold002 rebuild exon 1888903 1888990 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1889051 1889172 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1889230 1889401 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1889465 1889609 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1889670 1889709 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1889766 1890460 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1890528 1890638 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1890697 1890835 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1890895 1890957 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild exon 1891032 1891718 . - . gene_id "RvY_04051"; transcript_id "RvY_04051.1"; Scaffold002 rebuild transcript 1893973 1894957 . + . gene_id "RvY_04052"; transcript_id "RvY_04052.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1893973 1894036 . + . gene_id "RvY_04052"; transcript_id "RvY_04052.1"; Scaffold002 rebuild exon 1894101 1894156 . + . gene_id "RvY_04052"; transcript_id "RvY_04052.1"; Scaffold002 rebuild exon 1894663 1894725 . + . gene_id "RvY_04052"; transcript_id "RvY_04052.1"; Scaffold002 rebuild exon 1894793 1894957 . + . gene_id "RvY_04052"; transcript_id "RvY_04052.1"; Scaffold002 rebuild transcript 1898284 1900887 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.-"; similar_genes "ARSJ_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 1898284 1899005 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild exon 1899319 1899852 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild exon 1899936 1899972 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild exon 1900064 1900176 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild exon 1900271 1900370 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild exon 1900486 1900548 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild exon 1900645 1900887 . - . gene_id "RvY_04053"; transcript_id "RvY_04053.1"; Scaffold002 rebuild transcript 1901351 1902148 . - . gene_id "RvY_04054"; transcript_id "RvY_04054.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1901351 1901827 . - . gene_id "RvY_04054"; transcript_id "RvY_04054.1"; Scaffold002 rebuild exon 1902002 1902148 . - . gene_id "RvY_04054"; transcript_id "RvY_04054.1"; Scaffold002 rebuild transcript 1902224 1904954 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; annotation "hypothetical protein."; Pfam "[RFX_DNA_binding] RFX DNA-binding domain"; Scaffold002 rebuild exon 1902224 1902478 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1902555 1902704 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1902771 1902868 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1902928 1903076 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1903161 1903511 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1903750 1903875 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1903956 1904137 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1904195 1904370 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1904442 1904549 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild exon 1904852 1904954 . - . gene_id "RvY_04055"; transcript_id "RvY_04055.1"; Scaffold002 rebuild transcript 1906197 1908329 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold002 rebuild exon 1906197 1906296 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1906392 1906536 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1906602 1906629 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1906697 1906823 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1906899 1906926 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1907012 1907076 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1907157 1907249 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1907302 1907364 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1907441 1907547 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1907625 1907835 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild exon 1907893 1908329 . + . gene_id "RvY_04056"; transcript_id "RvY_04056.1"; Scaffold002 rebuild transcript 1908817 1909784 . - . gene_id "RvY_04057"; transcript_id "RvY_04057.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1908817 1909133 . - . gene_id "RvY_04057"; transcript_id "RvY_04057.1"; Scaffold002 rebuild exon 1909241 1909363 . - . gene_id "RvY_04057"; transcript_id "RvY_04057.1"; Scaffold002 rebuild exon 1909628 1909784 . - . gene_id "RvY_04057"; transcript_id "RvY_04057.1"; Scaffold002 rebuild transcript 1913385 1915398 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; gene_name "ARSB"; annotation "arylsulfatase B [EC:3.1.6.12]"; Pfam "[Sulfatase]|[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; EC "EC3.1.6.12"; KO "K01135"; similar_genes "ARSB_RAT(e-value:8.0e-13;bit-score:72.0)"; Scaffold002 rebuild exon 1913385 1913504 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild exon 1913588 1913747 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild exon 1913830 1913942 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild exon 1914019 1914055 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild exon 1914149 1914222 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild exon 1914301 1914553 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild exon 1914617 1915398 . + . gene_id "RvY_04058"; transcript_id "RvY_04058.1"; Scaffold002 rebuild transcript 1916225 1916539 . + . gene_id "RvY_04059"; transcript_id "RvY_04059.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1916225 1916306 . + . gene_id "RvY_04059"; transcript_id "RvY_04059.1"; Scaffold002 rebuild exon 1916379 1916539 . + . gene_id "RvY_04059"; transcript_id "RvY_04059.1"; Scaffold002 rebuild transcript 1916606 1917358 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1916606 1916824 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.1"; Scaffold002 rebuild exon 1916982 1917180 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.1"; Scaffold002 rebuild exon 1917255 1917358 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.1"; Scaffold002 rebuild transcript 1916606 1917284 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1916606 1916824 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.2"; Scaffold002 rebuild exon 1916982 1917284 . + . gene_id "RvY_04060"; transcript_id "RvY_04060.2"; Scaffold002 rebuild transcript 1918248 1919265 . + . gene_id "RvY_04061"; transcript_id "RvY_04061.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1918248 1918248 . + . gene_id "RvY_04061"; transcript_id "RvY_04061.1"; Scaffold002 rebuild exon 1918310 1918444 . + . gene_id "RvY_04061"; transcript_id "RvY_04061.1"; Scaffold002 rebuild exon 1918510 1918629 . + . gene_id "RvY_04061"; transcript_id "RvY_04061.1"; Scaffold002 rebuild exon 1918696 1918977 . + . gene_id "RvY_04061"; transcript_id "RvY_04061.1"; Scaffold002 rebuild exon 1919054 1919265 . + . gene_id "RvY_04061"; transcript_id "RvY_04061.1"; Scaffold002 rebuild transcript 1922369 1928477 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 1922369 1922616 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1923107 1923213 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1925978 1926091 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1926172 1926438 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1926513 1926556 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1926627 1926665 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1926731 1926808 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1926941 1927078 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1927513 1927982 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1928043 1928172 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild exon 1928256 1928477 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.1"; Scaffold002 rebuild transcript 1922369 1928298 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 1922369 1922616 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1923107 1923213 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1925978 1926091 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1926172 1926438 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1926513 1926556 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1926627 1926665 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1926731 1926808 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1926941 1927078 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1927513 1927982 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild exon 1928043 1928298 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.2"; Scaffold002 rebuild transcript 1926076 1928298 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 1926076 1926091 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1926172 1926438 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1926513 1926556 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1926627 1926665 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1926731 1926808 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1926941 1927078 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1927513 1927982 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild exon 1928043 1928298 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.3"; Scaffold002 rebuild transcript 1926603 1928298 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.4"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 1926603 1926665 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.4"; Scaffold002 rebuild exon 1926731 1926808 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.4"; Scaffold002 rebuild exon 1926941 1927078 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.4"; Scaffold002 rebuild exon 1927513 1928298 . + . gene_id "RvY_04062"; transcript_id "RvY_04062.4"; Scaffold002 rebuild transcript 1928773 1931459 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; gene_name "(1,2)CYCc(3)TyrKc"; annotation "hypothetical protein."; Pfam "(1,3)[Pkinase] Protein kinase domain|(1,3)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)GCY35_CAEEL(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 1928773 1929007 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1929667 1929791 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1929869 1930096 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1930183 1930256 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1930327 1930369 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1930446 1930622 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1930685 1930841 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1931030 1931078 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1931134 1931183 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1931262 1931347 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild exon 1931412 1931459 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.1"; Scaffold002 rebuild transcript 1929693 1931459 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; gene_name "(1,2)CYCc(3)TyrKc"; annotation "hypothetical protein."; Pfam "(1,3)[Pkinase] Protein kinase domain|(1,3)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)GCY35_CAEEL(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 1929693 1929791 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1929869 1930096 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1930183 1930256 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1930327 1930369 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1930446 1930622 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1930685 1930841 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1931030 1931078 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1931134 1931183 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1931262 1931347 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild exon 1931412 1931459 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.2"; Scaffold002 rebuild transcript 1928684 1930464 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; gene_name "(1,2)CYCc(3)TyrKc"; annotation "hypothetical protein."; Pfam "(1,3)[Pkinase] Protein kinase domain|(1,3)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)GCY35_CAEEL(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 1928684 1928692 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild exon 1928770 1929007 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild exon 1929667 1929791 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild exon 1929869 1930096 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild exon 1930183 1930256 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild exon 1930327 1930369 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild exon 1930444 1930464 . + . gene_id "RvY_04063"; transcript_id "RvY_04063.3"; Scaffold002 rebuild transcript 1933407 1933858 . + . gene_id "RvY_04064"; transcript_id "RvY_04064.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1933407 1933534 . + . gene_id "RvY_04064"; transcript_id "RvY_04064.1"; Scaffold002 rebuild exon 1933594 1933858 . + . gene_id "RvY_04064"; transcript_id "RvY_04064.1"; Scaffold002 rebuild transcript 1933975 1936411 . + . gene_id "RvY_04065"; transcript_id "RvY_04065.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 1933975 1934197 . + . gene_id "RvY_04065"; transcript_id "RvY_04065.1"; Scaffold002 rebuild exon 1934287 1934330 . + . gene_id "RvY_04065"; transcript_id "RvY_04065.1"; Scaffold002 rebuild exon 1934946 1935320 . + . gene_id "RvY_04065"; transcript_id "RvY_04065.1"; Scaffold002 rebuild exon 1936268 1936411 . + . gene_id "RvY_04065"; transcript_id "RvY_04065.1"; Scaffold002 rebuild transcript 1936664 1940555 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[DDE_1] DDE superfamily endonuclease|[Pkinase_Tyr] Protein tyrosine kinase|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GCY3E_DROME(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 1936664 1936780 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1936867 1937203 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1937292 1937543 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1937622 1938196 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1938469 1938651 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1938690 1938969 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1939270 1939400 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1939457 1939594 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1940012 1940188 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1940261 1940417 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild exon 1940503 1940555 . + . gene_id "RvY_04066"; transcript_id "RvY_04066.1"; Scaffold002 rebuild transcript 1941443 1942120 . - . gene_id "RvY_04067"; transcript_id "RvY_04067.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1941443 1942120 . - . gene_id "RvY_04067"; transcript_id "RvY_04067.1"; Scaffold002 rebuild transcript 1941913 1942257 . - . gene_id "RvY_04067"; transcript_id "RvY_04067.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1941913 1942257 . - . gene_id "RvY_04067"; transcript_id "RvY_04067.2"; Scaffold002 rebuild transcript 1942829 1947613 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1942829 1942930 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1943149 1943540 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1943955 1944115 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1944240 1944646 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1945394 1945607 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1945672 1946013 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1946353 1946518 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1947176 1947304 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild exon 1947586 1947613 . - . gene_id "RvY_04068"; transcript_id "RvY_04068.1"; Scaffold002 rebuild transcript 1947910 1948251 . + . gene_id "RvY_04069"; transcript_id "RvY_04069.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1947910 1948251 . + . gene_id "RvY_04069"; transcript_id "RvY_04069.1"; Scaffold002 rebuild transcript 1948558 1949188 . - . gene_id "RvY_04070"; transcript_id "RvY_04070.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1948558 1948660 . - . gene_id "RvY_04070"; transcript_id "RvY_04070.1"; Scaffold002 rebuild exon 1949106 1949188 . - . gene_id "RvY_04070"; transcript_id "RvY_04070.1"; Scaffold002 rebuild transcript 1948636 1949267 . + . gene_id "RvY_04071"; transcript_id "RvY_04071.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1948636 1948735 . + . gene_id "RvY_04071"; transcript_id "RvY_04071.1"; Scaffold002 rebuild exon 1948978 1949267 . + . gene_id "RvY_04071"; transcript_id "RvY_04071.1"; Scaffold002 rebuild transcript 1949706 1950347 . + . gene_id "RvY_04072"; transcript_id "RvY_04072.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1949706 1950012 . + . gene_id "RvY_04072"; transcript_id "RvY_04072.1"; Scaffold002 rebuild exon 1950112 1950197 . + . gene_id "RvY_04072"; transcript_id "RvY_04072.1"; Scaffold002 rebuild exon 1950318 1950347 . + . gene_id "RvY_04072"; transcript_id "RvY_04072.1"; Scaffold002 rebuild transcript 1950776 1952484 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15118"; similar_genes "S2538_XENLA(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 1950776 1950847 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1950943 1951205 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1951271 1951369 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1951589 1951658 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1951783 1951885 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1951949 1952119 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1952186 1952334 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild exon 1952437 1952484 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.1"; Scaffold002 rebuild transcript 1950883 1952484 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15118"; similar_genes "S2538_XENLA(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 1950883 1951205 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild exon 1951271 1951369 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild exon 1951589 1951658 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild exon 1951783 1951885 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild exon 1951949 1952119 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild exon 1952186 1952334 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild exon 1952437 1952484 . - . gene_id "RvY_04073"; transcript_id "RvY_04073.2"; Scaffold002 rebuild transcript 1952924 1954487 . - . gene_id "RvY_04074"; transcript_id "RvY_04074.1"; annotation "hypothetical protein."; Pfam "[FimP] Fms-interacting protein"; Scaffold002 rebuild exon 1952924 1953334 . - . gene_id "RvY_04074"; transcript_id "RvY_04074.1"; Scaffold002 rebuild exon 1953674 1954087 . - . gene_id "RvY_04074"; transcript_id "RvY_04074.1"; Scaffold002 rebuild exon 1954221 1954487 . - . gene_id "RvY_04074"; transcript_id "RvY_04074.1"; Scaffold002 rebuild transcript 1954894 1956486 . + . gene_id "RvY_04075"; transcript_id "RvY_04075.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1954894 1955238 . + . gene_id "RvY_04075"; transcript_id "RvY_04075.1"; Scaffold002 rebuild exon 1955312 1955769 . + . gene_id "RvY_04075"; transcript_id "RvY_04075.1"; Scaffold002 rebuild exon 1955820 1956486 . + . gene_id "RvY_04075"; transcript_id "RvY_04075.1"; Scaffold002 rebuild transcript 1957077 1965991 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; gene_name "DICER1"; annotation "endoribonuclease Dicer [EC:3.1.26.-]"; Pfam "[dsRNA_bind] Double stranded RNA binding domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[Ribonuclease_3] Ribonuclease III domain|[PAZ]|[ResIII] Type III restriction enzyme, res subunit"; CDD "Ribonuclease III family."; EC "EC3.1.26.-"; KO "K11592"; similar_genes "DCR1_DROME(e-value:3.2e-16;bit-score:83.0)"; Scaffold002 rebuild exon 1957077 1957242 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1957412 1957671 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1957741 1958000 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1958377 1959923 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1960210 1960907 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1961364 1961591 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1961669 1961801 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1961878 1962144 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1962443 1962779 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1963051 1963285 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1963352 1963618 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1963946 1964163 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1964228 1964476 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1964555 1964614 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1964678 1964785 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1965796 1965850 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild exon 1965908 1965991 . - . gene_id "RvY_04076"; transcript_id "RvY_04076.1"; Scaffold002 rebuild transcript 1967678 1968806 . + . gene_id "RvY_04077"; transcript_id "RvY_04077.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1967678 1967775 . + . gene_id "RvY_04077"; transcript_id "RvY_04077.1"; Scaffold002 rebuild exon 1967883 1968059 . + . gene_id "RvY_04077"; transcript_id "RvY_04077.1"; Scaffold002 rebuild exon 1968132 1968337 . + . gene_id "RvY_04077"; transcript_id "RvY_04077.1"; Scaffold002 rebuild exon 1968421 1968806 . + . gene_id "RvY_04077"; transcript_id "RvY_04077.1"; Scaffold002 rebuild transcript 1968903 1969176 . + . gene_id "RvY_04078"; transcript_id "RvY_04078.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1968903 1968914 . + . gene_id "RvY_04078"; transcript_id "RvY_04078.1"; Scaffold002 rebuild exon 1968997 1969176 . + . gene_id "RvY_04078"; transcript_id "RvY_04078.1"; Scaffold002 rebuild transcript 1972193 1973740 . + . gene_id "RvY_04079"; transcript_id "RvY_04079.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1972193 1972299 . + . gene_id "RvY_04079"; transcript_id "RvY_04079.1"; Scaffold002 rebuild exon 1972401 1972488 . + . gene_id "RvY_04079"; transcript_id "RvY_04079.1"; Scaffold002 rebuild exon 1972731 1972785 . + . gene_id "RvY_04079"; transcript_id "RvY_04079.1"; Scaffold002 rebuild exon 1972867 1973368 . + . gene_id "RvY_04079"; transcript_id "RvY_04079.1"; Scaffold002 rebuild exon 1973686 1973740 . + . gene_id "RvY_04079"; transcript_id "RvY_04079.1"; Scaffold002 rebuild transcript 1977490 1978142 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1977490 1977730 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.1"; Scaffold002 rebuild exon 1977804 1977908 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.1"; Scaffold002 rebuild exon 1978009 1978142 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.1"; Scaffold002 rebuild transcript 1977490 1977922 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1977490 1977730 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.2"; Scaffold002 rebuild exon 1977804 1977922 . + . gene_id "RvY_04080"; transcript_id "RvY_04080.2"; Scaffold002 rebuild transcript 1978452 1978757 . + . gene_id "RvY_04081"; transcript_id "RvY_04081.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1978452 1978757 . + . gene_id "RvY_04081"; transcript_id "RvY_04081.1"; Scaffold002 rebuild transcript 1981086 1982197 . - . gene_id "RvY_04082"; transcript_id "RvY_04082.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 1981086 1981352 . - . gene_id "RvY_04082"; transcript_id "RvY_04082.1"; Scaffold002 rebuild exon 1981546 1981970 . - . gene_id "RvY_04082"; transcript_id "RvY_04082.1"; Scaffold002 rebuild exon 1982047 1982197 . - . gene_id "RvY_04082"; transcript_id "RvY_04082.1"; Scaffold002 rebuild transcript 1984589 1985965 . + . gene_id "RvY_04083"; transcript_id "RvY_04083.1"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; Scaffold002 rebuild exon 1984589 1984706 . + . gene_id "RvY_04083"; transcript_id "RvY_04083.1"; Scaffold002 rebuild exon 1985766 1985965 . + . gene_id "RvY_04083"; transcript_id "RvY_04083.1"; Scaffold002 rebuild transcript 1988511 1990848 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(6)[ANF_receptor] Receptor family ligand binding region|(1,2,3,4,5)[Pkinase] Protein kinase domain|(1,2,3,4,5)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(4)EC4.6.1.2"; similar_genes "(4)ANPRA_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1988511 1989158 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1989229 1989436 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1989518 1989726 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1989955 1990128 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1990227 1990277 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1990364 1990501 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1990571 1990648 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1990726 1990764 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild exon 1990846 1990848 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.1"; Scaffold002 rebuild transcript 1988511 1990743 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(6)[ANF_receptor] Receptor family ligand binding region|(1,2,3,4,5)[Pkinase] Protein kinase domain|(1,2,3,4,5)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(4)EC4.6.1.2"; similar_genes "(4)ANPRA_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1988511 1989158 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1989229 1989436 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1989518 1989726 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1989955 1990128 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1990227 1990277 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1990364 1990501 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1990571 1990648 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild exon 1990726 1990743 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.2"; Scaffold002 rebuild transcript 1988511 1990642 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(6)[ANF_receptor] Receptor family ligand binding region|(1,2,3,4,5)[Pkinase] Protein kinase domain|(1,2,3,4,5)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(4)EC4.6.1.2"; similar_genes "(4)ANPRA_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1988511 1989158 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild exon 1989229 1989436 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild exon 1989518 1989726 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild exon 1989955 1990128 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild exon 1990227 1990277 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild exon 1990364 1990501 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild exon 1990571 1990642 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.3"; Scaffold002 rebuild transcript 1987042 1989402 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(6)[ANF_receptor] Receptor family ligand binding region|(1,2,3,4,5)[Pkinase] Protein kinase domain|(1,2,3,4,5)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(4)EC4.6.1.2"; similar_genes "(4)ANPRA_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1987042 1987095 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1987197 1987312 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1987398 1987447 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1987518 1987551 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1987756 1987903 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1988151 1988370 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1988515 1989158 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild exon 1989229 1989402 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.4"; Scaffold002 rebuild transcript 1988511 1990247 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.5"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(6)[ANF_receptor] Receptor family ligand binding region|(1,2,3,4,5)[Pkinase] Protein kinase domain|(1,2,3,4,5)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(4)EC4.6.1.2"; similar_genes "(4)ANPRA_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1988511 1989158 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.5"; Scaffold002 rebuild exon 1989229 1989436 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.5"; Scaffold002 rebuild exon 1989518 1989726 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.5"; Scaffold002 rebuild exon 1989955 1990128 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.5"; Scaffold002 rebuild exon 1990227 1990247 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.5"; Scaffold002 rebuild transcript 1990372 1992697 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(6)[ANF_receptor] Receptor family ligand binding region|(1,2,3,4,5)[Pkinase] Protein kinase domain|(1,2,3,4,5)[Pkinase_Tyr] Protein tyrosine kinase|(4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(4)EC4.6.1.2"; similar_genes "(4)ANPRA_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 1990372 1990501 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; Scaffold002 rebuild exon 1990571 1990764 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; Scaffold002 rebuild exon 1990846 1990889 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; Scaffold002 rebuild exon 1990975 1991301 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; Scaffold002 rebuild exon 1991366 1991407 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; Scaffold002 rebuild exon 1992313 1992697 . - . gene_id "RvY_04084"; transcript_id "RvY_04084.6"; Scaffold002 rebuild transcript 1994696 1996999 . + . gene_id "RvY_04085"; transcript_id "RvY_04085.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 1994696 1994716 . + . gene_id "RvY_04085"; transcript_id "RvY_04085.1"; Scaffold002 rebuild exon 1994797 1994941 . + . gene_id "RvY_04085"; transcript_id "RvY_04085.1"; Scaffold002 rebuild exon 1995406 1995867 . + . gene_id "RvY_04085"; transcript_id "RvY_04085.1"; Scaffold002 rebuild exon 1995948 1996056 . + . gene_id "RvY_04085"; transcript_id "RvY_04085.1"; Scaffold002 rebuild exon 1996366 1996999 . + . gene_id "RvY_04085"; transcript_id "RvY_04085.1"; Scaffold002 rebuild transcript 1997249 1999794 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "(1,2,3)EC1.11.1.7"; similar_genes "(1,2,3)PXDN_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 1997249 1997315 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild exon 1997417 1997519 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild exon 1997595 1997742 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild exon 1998002 1998305 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild exon 1998649 1999200 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild exon 1999267 1999348 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild exon 1999590 1999794 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.1"; Scaffold002 rebuild transcript 1997249 1999298 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "(1,2,3)EC1.11.1.7"; similar_genes "(1,2,3)PXDN_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 1997249 1997315 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; Scaffold002 rebuild exon 1997417 1997519 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; Scaffold002 rebuild exon 1997595 1997742 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; Scaffold002 rebuild exon 1998002 1998305 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; Scaffold002 rebuild exon 1998649 1999200 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; Scaffold002 rebuild exon 1999267 1999298 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.2"; Scaffold002 rebuild transcript 1997249 1999178 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.3"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "(1,2,3)EC1.11.1.7"; similar_genes "(1,2,3)PXDN_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 1997249 1997315 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.3"; Scaffold002 rebuild exon 1997417 1997519 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.3"; Scaffold002 rebuild exon 1997595 1997742 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.3"; Scaffold002 rebuild exon 1998002 1998305 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.3"; Scaffold002 rebuild exon 1998649 1999178 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.3"; Scaffold002 rebuild transcript 1999769 2000771 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.4"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "(1,2,3)EC1.11.1.7"; similar_genes "(1,2,3)PXDN_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 1999769 1999769 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.4"; Scaffold002 rebuild exon 1999838 1999873 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.4"; Scaffold002 rebuild exon 1999951 2000498 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.4"; Scaffold002 rebuild exon 2000571 2000771 . - . gene_id "RvY_04086"; transcript_id "RvY_04086.4"; Scaffold002 rebuild transcript 2000780 2001079 . + . gene_id "RvY_04087"; transcript_id "RvY_04087.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2000780 2001079 . + . gene_id "RvY_04087"; transcript_id "RvY_04087.1"; Scaffold002 rebuild transcript 2002904 2004190 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; gene_name "Ndr"; annotation "hypothetical protein."; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Ndr] Ndr family"; CDD "Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.)."; Scaffold002 rebuild exon 2002904 2003043 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003119 2003170 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003242 2003374 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003441 2003479 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003554 2003618 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003675 2003761 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003845 2003905 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2003982 2004038 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild exon 2004108 2004190 . - . gene_id "RvY_04088"; transcript_id "RvY_04088.1"; Scaffold002 rebuild transcript 2005064 2008119 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; gene_name "Ndr"; annotation "hypothetical protein."; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Ndr] Ndr family"; CDD "Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.)."; Scaffold002 rebuild exon 2005064 2005221 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2005589 2005640 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2005775 2005907 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2006125 2006163 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2006266 2006378 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2006454 2006621 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2006681 2006741 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2006883 2006945 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2007040 2007157 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2007319 2007382 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2007720 2007773 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild exon 2008096 2008119 . - . gene_id "RvY_04089"; transcript_id "RvY_04089.1"; Scaffold002 rebuild transcript 2007177 2007365 . + . gene_id "RvY_04090"; transcript_id "RvY_04090.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2007177 2007365 . + . gene_id "RvY_04090"; transcript_id "RvY_04090.1"; Scaffold002 rebuild transcript 2009090 2010961 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; gene_name "F7"; annotation "coagulation factor VII [EC:3.4.21.21]"; Pfam "[DUF1986]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 2009090 2009160 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; Scaffold002 rebuild exon 2009221 2009311 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; Scaffold002 rebuild exon 2009392 2009827 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; Scaffold002 rebuild exon 2010096 2010270 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; Scaffold002 rebuild exon 2010332 2010643 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; Scaffold002 rebuild exon 2010706 2010961 . - . gene_id "RvY_04091"; transcript_id "RvY_04091.1"; Scaffold002 rebuild transcript 2012452 2013638 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2012452 2012724 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.1"; Scaffold002 rebuild exon 2012919 2013638 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.1"; Scaffold002 rebuild transcript 2012452 2013876 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2012452 2012724 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.2"; Scaffold002 rebuild exon 2012919 2013561 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.2"; Scaffold002 rebuild exon 2013821 2013876 . - . gene_id "RvY_04092"; transcript_id "RvY_04092.2"; Scaffold002 rebuild transcript 2014172 2017165 . - . gene_id "RvY_04093"; transcript_id "RvY_04093.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2014172 2014234 . - . gene_id "RvY_04093"; transcript_id "RvY_04093.1"; Scaffold002 rebuild exon 2017115 2017165 . - . gene_id "RvY_04093"; transcript_id "RvY_04093.1"; Scaffold002 rebuild transcript 2017927 2018154 . + . gene_id "RvY_04094"; transcript_id "RvY_04094.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2017927 2018154 . + . gene_id "RvY_04094"; transcript_id "RvY_04094.1"; Scaffold002 rebuild transcript 2020217 2021299 . + . gene_id "RvY_04095"; transcript_id "RvY_04095.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 2020217 2021299 . + . gene_id "RvY_04095"; transcript_id "RvY_04095.1"; Scaffold002 rebuild transcript 2021499 2033289 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; gene_name "FASN"; annotation "putative Fatty acid synthase"; Pfam "[Ketoacyl-synt_C] Beta-ketoacyl synthase, C-terminal domain|[ketoacyl-synt] Beta-ketoacyl synthase, N-terminal domain|[Acyl_transf_1] Acyl transferase domain|[Thioesterase]"; CDD "Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The Scaffold002 rebuild exon 2021499 2021612 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2021668 2021919 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2021979 2022275 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2022489 2022973 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2023235 2023477 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2023666 2024112 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2024256 2024589 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2024655 2025105 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2026180 2026501 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2026561 2026905 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2027208 2027784 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2028064 2028545 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2028748 2028892 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2028957 2029379 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2029746 2030018 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2030076 2030418 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2030660 2031131 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2031460 2031690 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2032065 2032466 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2032770 2033113 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild exon 2033195 2033289 . - . gene_id "RvY_04096"; transcript_id "RvY_04096.1"; Scaffold002 rebuild transcript 2037121 2044050 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; gene_name "(2)CACNA1N"; annotation "(1)Voltage-dependent calcium channel type D subunit alpha-1(2)Voltage-dependent L-type calcium channel subunit alpha-1F"; Pfam "(2)[PKD_channel] Polycystin cation channel|(2)[Ca_chan_IQ] Voltage gated calcium channel IQ domain|[Ion_trans] Ion transport protein"; KO "(2)K05315"; similar_genes "(1)CAC1D_DROME(e-value:6.1e-100;bit-score:361.0)(2)CAC1F_MOUSE(e-value:4.2e-86;bit-score:315.0)"; Scaffold002 rebuild exon 2037121 2037355 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2037420 2037569 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2037892 2037953 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2038131 2038157 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2038265 2038336 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2038618 2038705 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2038775 2038941 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2039016 2039492 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2039823 2040100 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2040278 2040836 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2041040 2041172 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2041240 2041536 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2041798 2042086 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2042428 2042866 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2043300 2043405 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2043522 2043747 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2043822 2043920 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild exon 2044038 2044050 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.1"; Scaffold002 rebuild transcript 2034112 2037127 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; gene_name "(2)CACNA1N"; annotation "(1)Voltage-dependent calcium channel type D subunit alpha-1(2)Voltage-dependent L-type calcium channel subunit alpha-1F"; Pfam "(2)[PKD_channel] Polycystin cation channel|(2)[Ca_chan_IQ] Voltage gated calcium channel IQ domain|[Ion_trans] Ion transport protein"; KO "(2)K05315"; similar_genes "(1)CAC1D_DROME(e-value:6.1e-100;bit-score:361.0)(2)CAC1F_MOUSE(e-value:4.2e-86;bit-score:315.0)"; Scaffold002 rebuild exon 2034112 2034254 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2034321 2034558 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2034922 2035356 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2035617 2035771 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2035828 2036152 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2036319 2036507 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2036591 2036677 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2036751 2036861 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild exon 2036942 2037127 . - . gene_id "RvY_04097"; transcript_id "RvY_04097.2"; Scaffold002 rebuild transcript 2045795 2050214 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; gene_name "DCP1B"; annotation "mRNA-decapping enzyme 1B [EC:3.-.-.-]"; Pfam "[DCP1] Dcp1-like decapping family"; EC "EC3.-.-.-"; KO "K12611"; Scaffold002 rebuild exon 2045795 2045992 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; Scaffold002 rebuild exon 2046063 2046103 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; Scaffold002 rebuild exon 2048403 2048545 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; Scaffold002 rebuild exon 2048618 2049015 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; Scaffold002 rebuild exon 2049152 2049635 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; Scaffold002 rebuild exon 2049847 2050214 . + . gene_id "RvY_04098"; transcript_id "RvY_04098.1"; Scaffold002 rebuild transcript 2050845 2051673 . + . gene_id "RvY_04099"; transcript_id "RvY_04099.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2050845 2051067 . + . gene_id "RvY_04099"; transcript_id "RvY_04099.1"; Scaffold002 rebuild exon 2051135 2051518 . + . gene_id "RvY_04099"; transcript_id "RvY_04099.1"; Scaffold002 rebuild exon 2051606 2051673 . + . gene_id "RvY_04099"; transcript_id "RvY_04099.1"; Scaffold002 rebuild transcript 2051843 2052097 . - . gene_id "RvY_04100"; transcript_id "RvY_04100.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2051843 2052097 . - . gene_id "RvY_04100"; transcript_id "RvY_04100.1"; Scaffold002 rebuild transcript 2052201 2056650 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; gene_name "SR140"; annotation "putative U2-associated protein SR140"; Pfam "[cwf21]|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[Surp] Surp module|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "domain present in proteins, which are involved in regulation of nuclear pre-mRNA."; KO "K12842"; similar_genes "SR140_PONAB(e-value:3.2e-35;bit-score:146.0)"; Scaffold002 rebuild exon 2052201 2052722 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2052891 2053042 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2053255 2053416 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2053486 2053705 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2053890 2053977 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2054092 2054165 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2054247 2054409 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2054661 2055155 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2055355 2055608 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2055670 2056148 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2056345 2056477 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild exon 2056594 2056650 . - . gene_id "RvY_04101"; transcript_id "RvY_04101.1"; Scaffold002 rebuild transcript 2058783 2060991 . - . gene_id "RvY_04102"; transcript_id "RvY_04102.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2058783 2059211 . - . gene_id "RvY_04102"; transcript_id "RvY_04102.1"; Scaffold002 rebuild exon 2059737 2059855 . - . gene_id "RvY_04102"; transcript_id "RvY_04102.1"; Scaffold002 rebuild exon 2060014 2060120 . - . gene_id "RvY_04102"; transcript_id "RvY_04102.1"; Scaffold002 rebuild exon 2060465 2060731 . - . gene_id "RvY_04102"; transcript_id "RvY_04102.1"; Scaffold002 rebuild exon 2060828 2060991 . - . gene_id "RvY_04102"; transcript_id "RvY_04102.1"; Scaffold002 rebuild transcript 2064401 2066133 . - . gene_id "RvY_04103"; transcript_id "RvY_04103.1"; gene_name "ORB"; annotation "putative Cytoplasmic polyadenylation element-binding protein 1-B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; KO "K02602"; similar_genes "CPE1B_XENLA(e-value:2.2e-38;bit-score:157.0)"; Scaffold002 rebuild exon 2064401 2064726 . - . gene_id "RvY_04103"; transcript_id "RvY_04103.1"; Scaffold002 rebuild exon 2064791 2065108 . - . gene_id "RvY_04103"; transcript_id "RvY_04103.1"; Scaffold002 rebuild exon 2065471 2065597 . - . gene_id "RvY_04103"; transcript_id "RvY_04103.1"; Scaffold002 rebuild exon 2065658 2065953 . - . gene_id "RvY_04103"; transcript_id "RvY_04103.1"; Scaffold002 rebuild exon 2066025 2066133 . - . gene_id "RvY_04103"; transcript_id "RvY_04103.1"; Scaffold002 rebuild transcript 2067757 2068767 . - . gene_id "RvY_04104"; transcript_id "RvY_04104.1"; annotation "hypothetical protein."; Pfam "[Reticulon]"; Scaffold002 rebuild exon 2067757 2068078 . - . gene_id "RvY_04104"; transcript_id "RvY_04104.1"; Scaffold002 rebuild exon 2068391 2068767 . - . gene_id "RvY_04104"; transcript_id "RvY_04104.1"; Scaffold002 rebuild transcript 2069682 2072673 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; gene_name "ABTB1"; annotation "ankyrin repeat and BTB/POZ domain-containing protein 1"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[BTB] BTB/POZ domain|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; KO "K10520"; similar_genes "ABTB1_RAT(e-value:1.3e-23;bit-score:108.0)"; Scaffold002 rebuild exon 2069682 2069863 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2070087 2070257 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2070492 2070547 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2070607 2070751 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2070819 2070978 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2071138 2071300 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2071359 2071624 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2071841 2072002 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2072072 2072272 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2072401 2072485 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild exon 2072552 2072673 . + . gene_id "RvY_04105"; transcript_id "RvY_04105.1"; Scaffold002 rebuild transcript 2073187 2074897 . - . gene_id "RvY_04106"; transcript_id "RvY_04106.1"; annotation "hypothetical protein."; Pfam "[Ninjurin]"; Scaffold002 rebuild exon 2073187 2073700 . - . gene_id "RvY_04106"; transcript_id "RvY_04106.1"; Scaffold002 rebuild exon 2073892 2073921 . - . gene_id "RvY_04106"; transcript_id "RvY_04106.1"; Scaffold002 rebuild exon 2074003 2074040 . - . gene_id "RvY_04106"; transcript_id "RvY_04106.1"; Scaffold002 rebuild exon 2074440 2074683 . - . gene_id "RvY_04106"; transcript_id "RvY_04106.1"; Scaffold002 rebuild exon 2074884 2074897 . - . gene_id "RvY_04106"; transcript_id "RvY_04106.1"; Scaffold002 rebuild transcript 2076959 2077285 . + . gene_id "RvY_04107"; transcript_id "RvY_04107.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2076959 2077285 . + . gene_id "RvY_04107"; transcript_id "RvY_04107.1"; Scaffold002 rebuild transcript 2077299 2077523 . + . gene_id "RvY_04108"; transcript_id "RvY_04108.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2077299 2077523 . + . gene_id "RvY_04108"; transcript_id "RvY_04108.1"; Scaffold002 rebuild transcript 2079396 2080568 . - . gene_id "RvY_04109"; transcript_id "RvY_04109.1"; gene_name "COG1878"; annotation "hypothetical protein."; Pfam "[Cyclase] Putative cyclase"; CDD "Kynurenine formamidase [Amino acid transport and metabolism]"; Scaffold002 rebuild exon 2079396 2079948 . - . gene_id "RvY_04109"; transcript_id "RvY_04109.1"; Scaffold002 rebuild exon 2080276 2080568 . - . gene_id "RvY_04109"; transcript_id "RvY_04109.1"; Scaffold002 rebuild transcript 2081390 2087436 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; gene_name "PHKA_B"; annotation "Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform"; Pfam "[Glyco_hydro_15] Glycosyl hydrolases family 15"; KO "K07190"; similar_genes "KPB1_HUMAN(e-value:5.4e-120;bit-score:428.0)"; Scaffold002 rebuild exon 2081390 2081638 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2081867 2082070 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2082177 2082458 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2082528 2082736 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2082980 2083109 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2083174 2083329 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2083399 2083567 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2083869 2084379 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2084636 2085818 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2086122 2086601 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2087032 2087205 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild exon 2087275 2087436 . - . gene_id "RvY_04110"; transcript_id "RvY_04110.1"; Scaffold002 rebuild transcript 2088087 2090168 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; gene_name "CDC73"; annotation "hypothetical protein."; Pfam "[CDC73] RNA pol II accessory factor, Cdc73 family"; CDD "RNA pol II accessory factor, Cdc73 family."; KO "K15175"; similar_genes "CDC73_RAT(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 2088087 2088217 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; Scaffold002 rebuild exon 2088282 2088390 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; Scaffold002 rebuild exon 2088495 2089067 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; Scaffold002 rebuild exon 2089142 2089422 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; Scaffold002 rebuild exon 2089695 2089927 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; Scaffold002 rebuild exon 2089990 2090168 . + . gene_id "RvY_04111"; transcript_id "RvY_04111.1"; Scaffold002 rebuild transcript 2092048 2092266 . - . gene_id "RvY_04112"; transcript_id "RvY_04112.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2092048 2092266 . - . gene_id "RvY_04112"; transcript_id "RvY_04112.1"; Scaffold002 rebuild transcript 2092430 2093364 . + . gene_id "RvY_04113"; transcript_id "RvY_04113.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2092430 2092504 . + . gene_id "RvY_04113"; transcript_id "RvY_04113.1"; Scaffold002 rebuild exon 2092597 2092740 . + . gene_id "RvY_04113"; transcript_id "RvY_04113.1"; Scaffold002 rebuild exon 2092827 2092937 . + . gene_id "RvY_04113"; transcript_id "RvY_04113.1"; Scaffold002 rebuild exon 2093013 2093081 . + . gene_id "RvY_04113"; transcript_id "RvY_04113.1"; Scaffold002 rebuild exon 2093311 2093364 . + . gene_id "RvY_04113"; transcript_id "RvY_04113.1"; Scaffold002 rebuild transcript 2093509 2093871 . + . gene_id "RvY_04114"; transcript_id "RvY_04114.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2093509 2093871 . + . gene_id "RvY_04114"; transcript_id "RvY_04114.1"; Scaffold002 rebuild transcript 2093918 2095809 . - . gene_id "RvY_04115"; transcript_id "RvY_04115.1"; gene_name "OS9"; annotation "amplified in osteosarcoma"; Pfam "[PRKCSH] Glucosidase II beta subunit-like protein|[PRKCSH_1] Glucosidase II beta subunit-like protein"; KO "K10088"; Scaffold002 rebuild exon 2093918 2094417 . - . gene_id "RvY_04115"; transcript_id "RvY_04115.1"; Scaffold002 rebuild exon 2094607 2094976 . - . gene_id "RvY_04115"; transcript_id "RvY_04115.1"; Scaffold002 rebuild exon 2095162 2095305 . - . gene_id "RvY_04115"; transcript_id "RvY_04115.1"; Scaffold002 rebuild exon 2095383 2095562 . - . gene_id "RvY_04115"; transcript_id "RvY_04115.1"; Scaffold002 rebuild exon 2095672 2095809 . - . gene_id "RvY_04115"; transcript_id "RvY_04115.1"; Scaffold002 rebuild transcript 2097051 2097431 . + . gene_id "RvY_04116"; transcript_id "RvY_04116.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2097051 2097431 . + . gene_id "RvY_04116"; transcript_id "RvY_04116.1"; Scaffold002 rebuild transcript 2098244 2098811 . + . gene_id "RvY_04117"; transcript_id "RvY_04117.1"; gene_name "OXT"; annotation "oxytocin"; Pfam "[Hormone_5] Neurohypophysial hormones, C-terminal Domain"; CDD "Neurohypophysial hormones. Vasopressin/oxytocin gene family."; KO "K05243"; similar_genes "NEUI_TAKRU(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 2098244 2098393 . + . gene_id "RvY_04117"; transcript_id "RvY_04117.1"; Scaffold002 rebuild exon 2098465 2098672 . + . gene_id "RvY_04117"; transcript_id "RvY_04117.1"; Scaffold002 rebuild exon 2098738 2098811 . + . gene_id "RvY_04117"; transcript_id "RvY_04117.1"; Scaffold002 rebuild transcript 2099587 2100562 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2099587 2099790 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.1"; Scaffold002 rebuild exon 2099875 2099991 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.1"; Scaffold002 rebuild exon 2100178 2100301 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.1"; Scaffold002 rebuild exon 2100438 2100562 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.1"; Scaffold002 rebuild transcript 2099587 2100219 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2099587 2099790 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.2"; Scaffold002 rebuild exon 2099875 2099991 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.2"; Scaffold002 rebuild exon 2100178 2100219 . - . gene_id "RvY_04118"; transcript_id "RvY_04118.2"; Scaffold002 rebuild transcript 2102255 2103529 . - . gene_id "RvY_04119"; transcript_id "RvY_04119.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2102255 2103529 . - . gene_id "RvY_04119"; transcript_id "RvY_04119.1"; Scaffold002 rebuild transcript 2104252 2105265 . - . gene_id "RvY_04120"; transcript_id "RvY_04120.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2104252 2104893 . - . gene_id "RvY_04120"; transcript_id "RvY_04120.1"; Scaffold002 rebuild exon 2105188 2105265 . - . gene_id "RvY_04120"; transcript_id "RvY_04120.1"; Scaffold002 rebuild transcript 2105400 2106651 . + . gene_id "RvY_04121"; transcript_id "RvY_04121.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2105400 2105492 . + . gene_id "RvY_04121"; transcript_id "RvY_04121.1"; Scaffold002 rebuild exon 2106484 2106651 . + . gene_id "RvY_04121"; transcript_id "RvY_04121.1"; Scaffold002 rebuild transcript 2107306 2110431 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; gene_name "WD40"; annotation "putative Autophagy-related protein 16"; Pfam "[WD40] WD domain, G-beta repeat|[ATG16] Autophagy protein 16 (ATG16)"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "ATG16_XENTR(e-value:3.8e-38;bit-score:156.0)"; Scaffold002 rebuild exon 2107306 2107438 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2107595 2107712 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2107827 2107985 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2108275 2108674 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2109073 2109324 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2109397 2109691 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2109981 2110065 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild exon 2110179 2110431 . + . gene_id "RvY_04122"; transcript_id "RvY_04122.1"; Scaffold002 rebuild transcript 2110959 2111267 . - . gene_id "RvY_04123"; transcript_id "RvY_04123.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2110959 2111267 . - . gene_id "RvY_04123"; transcript_id "RvY_04123.1"; Scaffold002 rebuild transcript 2113315 2114637 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.1"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)"; Scaffold002 rebuild exon 2113315 2113601 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.1"; Scaffold002 rebuild exon 2113673 2114017 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.1"; Scaffold002 rebuild exon 2114105 2114217 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.1"; Scaffold002 rebuild exon 2114330 2114637 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.1"; Scaffold002 rebuild transcript 2113315 2114021 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.2"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)"; Scaffold002 rebuild exon 2113315 2113601 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.2"; Scaffold002 rebuild exon 2113673 2114021 . + . gene_id "RvY_04124"; transcript_id "RvY_04124.2"; Scaffold002 rebuild transcript 2115276 2115697 . - . gene_id "RvY_04125"; transcript_id "RvY_04125.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2115276 2115350 . - . gene_id "RvY_04125"; transcript_id "RvY_04125.1"; Scaffold002 rebuild exon 2115448 2115542 . - . gene_id "RvY_04125"; transcript_id "RvY_04125.1"; Scaffold002 rebuild exon 2115625 2115697 . - . gene_id "RvY_04125"; transcript_id "RvY_04125.1"; Scaffold002 rebuild transcript 2116294 2119537 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold002 rebuild exon 2116294 2116490 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild exon 2116570 2116836 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild exon 2116977 2117156 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild exon 2118134 2118321 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild exon 2118408 2118729 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild exon 2118995 2119255 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild exon 2119360 2119537 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.1"; Scaffold002 rebuild transcript 2116406 2119537 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold002 rebuild exon 2116406 2116836 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; Scaffold002 rebuild exon 2116977 2117156 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; Scaffold002 rebuild exon 2118134 2118321 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; Scaffold002 rebuild exon 2118408 2118729 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; Scaffold002 rebuild exon 2118995 2119255 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; Scaffold002 rebuild exon 2119360 2119537 . - . gene_id "RvY_04126"; transcript_id "RvY_04126.2"; Scaffold002 rebuild transcript 2120077 2120271 . + . gene_id "RvY_04127"; transcript_id "RvY_04127.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2120077 2120271 . + . gene_id "RvY_04127"; transcript_id "RvY_04127.1"; Scaffold002 rebuild transcript 2120465 2121678 . + . gene_id "RvY_04128"; transcript_id "RvY_04128.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2120465 2120524 . + . gene_id "RvY_04128"; transcript_id "RvY_04128.1"; Scaffold002 rebuild exon 2121154 2121219 . + . gene_id "RvY_04128"; transcript_id "RvY_04128.1"; Scaffold002 rebuild exon 2121613 2121678 . + . gene_id "RvY_04128"; transcript_id "RvY_04128.1"; Scaffold002 rebuild transcript 2122580 2123187 . - . gene_id "RvY_04129"; transcript_id "RvY_04129.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2122580 2122912 . - . gene_id "RvY_04129"; transcript_id "RvY_04129.1"; Scaffold002 rebuild exon 2123104 2123187 . - . gene_id "RvY_04129"; transcript_id "RvY_04129.1"; Scaffold002 rebuild transcript 2123470 2124655 . + . gene_id "RvY_04130"; transcript_id "RvY_04130.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2123470 2123646 . + . gene_id "RvY_04130"; transcript_id "RvY_04130.1"; Scaffold002 rebuild exon 2124062 2124128 . + . gene_id "RvY_04130"; transcript_id "RvY_04130.1"; Scaffold002 rebuild exon 2124315 2124655 . + . gene_id "RvY_04130"; transcript_id "RvY_04130.1"; Scaffold002 rebuild transcript 2125069 2126112 . + . gene_id "RvY_04131"; transcript_id "RvY_04131.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2125069 2125422 . + . gene_id "RvY_04131"; transcript_id "RvY_04131.1"; Scaffold002 rebuild exon 2125795 2126112 . + . gene_id "RvY_04131"; transcript_id "RvY_04131.1"; Scaffold002 rebuild transcript 2126427 2127275 . + . gene_id "RvY_04132"; transcript_id "RvY_04132.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2126427 2127275 . + . gene_id "RvY_04132"; transcript_id "RvY_04132.1"; Scaffold002 rebuild transcript 2128573 2130814 . - . gene_id "RvY_04133"; transcript_id "RvY_04133.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2128573 2128629 . - . gene_id "RvY_04133"; transcript_id "RvY_04133.1"; Scaffold002 rebuild exon 2128940 2129253 . - . gene_id "RvY_04133"; transcript_id "RvY_04133.1"; Scaffold002 rebuild exon 2129319 2129457 . - . gene_id "RvY_04133"; transcript_id "RvY_04133.1"; Scaffold002 rebuild exon 2129531 2130814 . - . gene_id "RvY_04133"; transcript_id "RvY_04133.1"; Scaffold002 rebuild transcript 2132291 2133091 . - . gene_id "RvY_04134"; transcript_id "RvY_04134.1"; gene_name "UBE2R"; annotation "putative Ubiquitin-conjugating enzyme E2 R1"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K02207"; similar_genes "UB2R1_HUMAN(e-value:5.3e-48;bit-score:189.0)"; Scaffold002 rebuild exon 2132291 2133091 . - . gene_id "RvY_04134"; transcript_id "RvY_04134.1"; Scaffold002 rebuild transcript 2135291 2137171 . + . gene_id "RvY_04135"; transcript_id "RvY_04135.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2135291 2136051 . + . gene_id "RvY_04135"; transcript_id "RvY_04135.1"; Scaffold002 rebuild exon 2136256 2136436 . + . gene_id "RvY_04135"; transcript_id "RvY_04135.1"; Scaffold002 rebuild exon 2136508 2136899 . + . gene_id "RvY_04135"; transcript_id "RvY_04135.1"; Scaffold002 rebuild exon 2136988 2137171 . + . gene_id "RvY_04135"; transcript_id "RvY_04135.1"; Scaffold002 rebuild transcript 2143229 2143516 . - . gene_id "RvY_04136"; transcript_id "RvY_04136.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2143229 2143516 . - . gene_id "RvY_04136"; transcript_id "RvY_04136.1"; Scaffold002 rebuild transcript 2145676 2147645 . + . gene_id "RvY_04137"; transcript_id "RvY_04137.1"; product "HOX1 labial"; gene_name "HOX_1"; annotation "HOX1 labial | homeobox protein HoxA/B/D1"; Pfam "[Homeobox]"; KO "K09301"; similar_genes "LAB_DROME(e-value:1.5e-22;bit-score:104.0)"; Scaffold002 rebuild exon 2145676 2145850 . + . gene_id "RvY_04137"; transcript_id "RvY_04137.1"; Scaffold002 rebuild exon 2146290 2146961 . + . gene_id "RvY_04137"; transcript_id "RvY_04137.1"; Scaffold002 rebuild exon 2147090 2147423 . + . gene_id "RvY_04137"; transcript_id "RvY_04137.1"; Scaffold002 rebuild exon 2147513 2147645 . + . gene_id "RvY_04137"; transcript_id "RvY_04137.1"; Scaffold002 rebuild transcript 2148823 2149269 . - . gene_id "RvY_04138"; transcript_id "RvY_04138.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2148823 2149269 . - . gene_id "RvY_04138"; transcript_id "RvY_04138.1"; Scaffold002 rebuild transcript 2149668 2150101 . - . gene_id "RvY_04139"; transcript_id "RvY_04139.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2149668 2149975 . - . gene_id "RvY_04139"; transcript_id "RvY_04139.1"; Scaffold002 rebuild exon 2150032 2150101 . - . gene_id "RvY_04139"; transcript_id "RvY_04139.1"; Scaffold002 rebuild transcript 2150973 2151269 . - . gene_id "RvY_04140"; transcript_id "RvY_04140.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2150973 2151269 . - . gene_id "RvY_04140"; transcript_id "RvY_04140.1"; Scaffold002 rebuild transcript 2155844 2157669 . - . gene_id "RvY_04141"; transcript_id "RvY_04141.1"; gene_name "nagK"; annotation "N-acetylglucosamine kinase [EC:2.7.1.59]"; Pfam "[BcrAD_BadFG] BadF/BadG/BcrA/BcrD ATPase family"; CDD "BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370."; EC "EC2.7.1.59"; KO "K00884"; similar_genes "NAGK_RAT(e-value:6.3e-17;bit-score:85.0)"; Scaffold002 rebuild exon 2155844 2156100 . - . gene_id "RvY_04141"; transcript_id "RvY_04141.1"; Scaffold002 rebuild exon 2156389 2156517 . - . gene_id "RvY_04141"; transcript_id "RvY_04141.1"; Scaffold002 rebuild exon 2156575 2156916 . - . gene_id "RvY_04141"; transcript_id "RvY_04141.1"; Scaffold002 rebuild exon 2157264 2157669 . - . gene_id "RvY_04141"; transcript_id "RvY_04141.1"; Scaffold002 rebuild transcript 2159426 2159632 . - . gene_id "RvY_04142"; transcript_id "RvY_04142.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2159426 2159632 . - . gene_id "RvY_04142"; transcript_id "RvY_04142.1"; Scaffold002 rebuild transcript 2159759 2160867 . - . gene_id "RvY_04143"; transcript_id "RvY_04143.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2159759 2159833 . - . gene_id "RvY_04143"; transcript_id "RvY_04143.1"; Scaffold002 rebuild exon 2159937 2160103 . - . gene_id "RvY_04143"; transcript_id "RvY_04143.1"; Scaffold002 rebuild exon 2160235 2160622 . - . gene_id "RvY_04143"; transcript_id "RvY_04143.1"; Scaffold002 rebuild exon 2160715 2160867 . - . gene_id "RvY_04143"; transcript_id "RvY_04143.1"; Scaffold002 rebuild transcript 2160869 2161347 . - . gene_id "RvY_04144"; transcript_id "RvY_04144.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2160869 2160922 . - . gene_id "RvY_04144"; transcript_id "RvY_04144.1"; Scaffold002 rebuild exon 2161051 2161347 . - . gene_id "RvY_04144"; transcript_id "RvY_04144.1"; Scaffold002 rebuild transcript 2164113 2165138 . - . gene_id "RvY_04145"; transcript_id "RvY_04145.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 2164113 2165138 . - . gene_id "RvY_04145"; transcript_id "RvY_04145.1"; Scaffold002 rebuild transcript 2170042 2170239 . - . gene_id "RvY_04146"; transcript_id "RvY_04146.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2170042 2170239 . - . gene_id "RvY_04146"; transcript_id "RvY_04146.1"; Scaffold002 rebuild transcript 2171018 2174361 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; gene_name "KLKB1"; annotation "plasma kallikrein [EC:3.4.21.34]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 2171018 2171378 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2171677 2172092 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2172192 2173071 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2173234 2173411 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2173478 2173719 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2173784 2173816 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2173875 2174029 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild exon 2174098 2174361 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.1"; Scaffold002 rebuild transcript 2170602 2174361 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; gene_name "KLKB1"; annotation "plasma kallikrein [EC:3.4.21.34]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 2170602 2170640 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2171069 2171378 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2171677 2172092 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2172192 2173071 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2173234 2173411 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2173478 2173719 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2173784 2173816 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2173875 2174029 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild exon 2174098 2174361 . + . gene_id "RvY_04147"; transcript_id "RvY_04147.2"; Scaffold002 rebuild transcript 2174944 2177348 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; annotation "hypothetical protein."; Pfam "[COesterase] Carboxylesterase family"; EC "EC3.1.1.1"; similar_genes "EST1_RABIT(e-value:2.3e-10;bit-score:63.0)"; Scaffold002 rebuild exon 2174944 2175177 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild exon 2175629 2175824 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild exon 2175895 2176185 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild exon 2176237 2176383 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild exon 2176751 2176861 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild exon 2176963 2177089 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild exon 2177210 2177348 . + . gene_id "RvY_04148"; transcript_id "RvY_04148.1"; Scaffold002 rebuild transcript 2178075 2184843 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; gene_name "SLK"; annotation "STE20-like serine/threonine-protein kinase"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[PKK] Polo kinase kinase"; CDD "Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions."; EC "EC2.7.11.1"; KO "K08836"; similar_genes "SLK_MOUSE(e-value:3.1e-99;bit-score:359.0)"; Scaffold002 rebuild exon 2178075 2178254 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2178330 2178443 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2178692 2178817 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2178912 2179118 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2179182 2179415 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2179739 2179882 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2179963 2180215 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2180520 2180740 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2180895 2181197 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2181530 2181907 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2181966 2182694 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2182960 2183128 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2183194 2183393 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2183727 2183794 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2183869 2184067 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2184463 2184627 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild exon 2184688 2184843 . - . gene_id "RvY_04149"; transcript_id "RvY_04149.1"; Scaffold002 rebuild transcript 2185128 2185690 . + . gene_id "RvY_04150"; transcript_id "RvY_04150.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2185128 2185149 . + . gene_id "RvY_04150"; transcript_id "RvY_04150.1"; Scaffold002 rebuild exon 2185419 2185690 . + . gene_id "RvY_04150"; transcript_id "RvY_04150.1"; Scaffold002 rebuild transcript 2186607 2189869 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; gene_name "ELAV_HUD_SF"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076)."; similar_genes "SHEP_DROWI(e-value:2.0e-24;bit-score:110.0)"; Scaffold002 rebuild exon 2186607 2186829 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild exon 2187036 2187495 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild exon 2187848 2188025 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild exon 2188296 2188518 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild exon 2188900 2189038 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild exon 2189143 2189335 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild exon 2189651 2189869 . + . gene_id "RvY_04151"; transcript_id "RvY_04151.1"; Scaffold002 rebuild transcript 2192281 2192841 . + . gene_id "RvY_04152"; transcript_id "RvY_04152.1"; annotation "putative Deoxynucleotidyltransferase terminal-interacting protein 2"; Pfam "[Fcf2] Fcf2 pre-rRNA processing"; similar_genes "TDIF2_HUMAN(e-value:1.1e-41;bit-score:167.0)"; Scaffold002 rebuild exon 2192281 2192841 . + . gene_id "RvY_04152"; transcript_id "RvY_04152.1"; Scaffold002 rebuild transcript 2193220 2193420 . - . gene_id "RvY_04153"; transcript_id "RvY_04153.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2193220 2193420 . - . gene_id "RvY_04153"; transcript_id "RvY_04153.1"; Scaffold002 rebuild transcript 2195324 2196167 . + . gene_id "RvY_04154"; transcript_id "RvY_04154.1"; annotation "hypothetical protein."; Pfam "[FR47] FR47-like protein"; Scaffold002 rebuild exon 2195324 2195432 . + . gene_id "RvY_04154"; transcript_id "RvY_04154.1"; Scaffold002 rebuild exon 2195510 2195654 . + . gene_id "RvY_04154"; transcript_id "RvY_04154.1"; Scaffold002 rebuild exon 2195711 2196167 . + . gene_id "RvY_04154"; transcript_id "RvY_04154.1"; Scaffold002 rebuild transcript 2196618 2197636 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.1"; gene_name "(1)ECE1"; annotation "(1)endothelin-converting enzyme [EC:3.4.24.71](2)hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|(1)[Ubie_methyltran] ubiE/COQ5 methyltransferase family|(1)[Methyltransf_23] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; EC "(1)EC2.1.1.-|EC3.4.24.71"; KO "(1)K01415"; similar_genes "(1)MTL13_HUMAN(e-value:7.6e-07;bit-score:52.0)"; Scaffold002 rebuild exon 2196618 2196680 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.1"; Scaffold002 rebuild exon 2196767 2196860 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.1"; Scaffold002 rebuild exon 2197022 2197141 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.1"; Scaffold002 rebuild exon 2197220 2197383 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.1"; Scaffold002 rebuild exon 2197466 2197636 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.1"; Scaffold002 rebuild transcript 2196790 2197636 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.2"; gene_name "(1)ECE1"; annotation "(1)endothelin-converting enzyme [EC:3.4.24.71](2)hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|(1)[Ubie_methyltran] ubiE/COQ5 methyltransferase family|(1)[Methyltransf_23] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; EC "(1)EC2.1.1.-|EC3.4.24.71"; KO "(1)K01415"; similar_genes "(1)MTL13_HUMAN(e-value:7.6e-07;bit-score:52.0)"; Scaffold002 rebuild exon 2196790 2196841 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.2"; Scaffold002 rebuild exon 2197022 2197141 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.2"; Scaffold002 rebuild exon 2197220 2197383 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.2"; Scaffold002 rebuild exon 2197466 2197636 . + . gene_id "RvY_04155"; transcript_id "RvY_04155.2"; Scaffold002 rebuild transcript 2199177 2200850 . - . gene_id "RvY_04156"; transcript_id "RvY_04156.1"; gene_name "FRQ1"; annotation "putative Myosin regulatory light chain 12A"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "ML12A_HUMAN(e-value:9.0e-46;bit-score:181.0)"; Scaffold002 rebuild exon 2199177 2199342 . - . gene_id "RvY_04156"; transcript_id "RvY_04156.1"; Scaffold002 rebuild exon 2199616 2199694 . - . gene_id "RvY_04156"; transcript_id "RvY_04156.1"; Scaffold002 rebuild exon 2199796 2199973 . - . gene_id "RvY_04156"; transcript_id "RvY_04156.1"; Scaffold002 rebuild exon 2200682 2200771 . - . gene_id "RvY_04156"; transcript_id "RvY_04156.1"; Scaffold002 rebuild exon 2200848 2200850 . - . gene_id "RvY_04156"; transcript_id "RvY_04156.1"; Scaffold002 rebuild transcript 2202441 2205132 . + . gene_id "RvY_04157"; transcript_id "RvY_04157.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 2202441 2204026 . + . gene_id "RvY_04157"; transcript_id "RvY_04157.1"; Scaffold002 rebuild exon 2204334 2204841 . + . gene_id "RvY_04157"; transcript_id "RvY_04157.1"; Scaffold002 rebuild exon 2204980 2205132 . + . gene_id "RvY_04157"; transcript_id "RvY_04157.1"; Scaffold002 rebuild transcript 2205371 2206952 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; gene_name "SEC11"; annotation "Signal peptidase complex catalytic subunit SEC11A"; Pfam "[Peptidase_S24] Peptidase S24-like"; CDD "signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I."; EC "EC3.4.-.-"; KO "K13280"; similar_genes "SC11A_BOVIN(e-value:1.3e-74;bit-score:277.0)"; Scaffold002 rebuild exon 2205371 2205424 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; Scaffold002 rebuild exon 2205512 2205569 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; Scaffold002 rebuild exon 2205641 2205760 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; Scaffold002 rebuild exon 2205825 2205974 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; Scaffold002 rebuild exon 2206697 2206806 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; Scaffold002 rebuild exon 2206878 2206952 . - . gene_id "RvY_04158"; transcript_id "RvY_04158.1"; Scaffold002 rebuild transcript 2207898 2209283 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.1"; gene_name "(1)TK(2)tdk"; annotation "(1)hypothetical protein.(2)putative Thymidine kinase, cytosolic"; Pfam "[TK] Thymidine kinase"; CDD "Thymidine kinase."; EC "EC2.7.1.21"; KO "(2)K00857"; similar_genes "(1)KITH_CHICK(e-value:2.5e-22;bit-score:103.0)(2)KITH_CHICK(e-value:1.2e-30;bit-score:131.0)"; Scaffold002 rebuild exon 2207898 2208323 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.1"; Scaffold002 rebuild exon 2208709 2208892 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.1"; Scaffold002 rebuild exon 2208959 2209072 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.1"; Scaffold002 rebuild exon 2209129 2209160 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.1"; Scaffold002 rebuild exon 2209221 2209283 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.1"; Scaffold002 rebuild transcript 2207898 2209283 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; gene_name "(1)TK(2)tdk"; annotation "(1)hypothetical protein.(2)putative Thymidine kinase, cytosolic"; Pfam "[TK] Thymidine kinase"; CDD "Thymidine kinase."; EC "EC2.7.1.21"; KO "(2)K00857"; similar_genes "(1)KITH_CHICK(e-value:2.5e-22;bit-score:103.0)(2)KITH_CHICK(e-value:1.2e-30;bit-score:131.0)"; Scaffold002 rebuild exon 2207898 2208098 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; Scaffold002 rebuild exon 2208204 2208323 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; Scaffold002 rebuild exon 2208709 2208892 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; Scaffold002 rebuild exon 2208959 2209072 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; Scaffold002 rebuild exon 2209129 2209160 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; Scaffold002 rebuild exon 2209221 2209283 . - . gene_id "RvY_04159"; transcript_id "RvY_04159.2"; Scaffold002 rebuild transcript 2210612 2212826 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; gene_name "rocD"; annotation "Ornithine aminotransferase, mitochondrial"; Pfam "[Aminotran_3] Aminotransferase class-III"; CDD "ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis."; EC "EC2.6.1.13"; KO "K00819"; similar_genes "OAT_DROME(e-value:4.7e-136;bit-score:481.0)"; Scaffold002 rebuild exon 2210612 2210733 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2210796 2210848 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2210962 2211123 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2211201 2211263 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2211328 2211551 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2211626 2211798 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2212109 2212187 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2212292 2212547 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild exon 2212642 2212826 . + . gene_id "RvY_04160"; transcript_id "RvY_04160.1"; Scaffold002 rebuild transcript 2214686 2215706 . - . gene_id "RvY_04161"; transcript_id "RvY_04161.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2214686 2214832 . - . gene_id "RvY_04161"; transcript_id "RvY_04161.1"; Scaffold002 rebuild exon 2214936 2215096 . - . gene_id "RvY_04161"; transcript_id "RvY_04161.1"; Scaffold002 rebuild exon 2215172 2215706 . - . gene_id "RvY_04161"; transcript_id "RvY_04161.1"; Scaffold002 rebuild transcript 2217143 2218319 . - . gene_id "RvY_04162"; transcript_id "RvY_04162.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2217143 2217280 . - . gene_id "RvY_04162"; transcript_id "RvY_04162.1"; Scaffold002 rebuild exon 2217403 2217563 . - . gene_id "RvY_04162"; transcript_id "RvY_04162.1"; Scaffold002 rebuild exon 2217839 2218319 . - . gene_id "RvY_04162"; transcript_id "RvY_04162.1"; Scaffold002 rebuild transcript 2220935 2221889 . - . gene_id "RvY_04163"; transcript_id "RvY_04163.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2220935 2221206 . - . gene_id "RvY_04163"; transcript_id "RvY_04163.1"; Scaffold002 rebuild exon 2221862 2221889 . - . gene_id "RvY_04163"; transcript_id "RvY_04163.1"; Scaffold002 rebuild transcript 2221897 2222749 . - . gene_id "RvY_04164"; transcript_id "RvY_04164.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 2221897 2222375 . - . gene_id "RvY_04164"; transcript_id "RvY_04164.1"; Scaffold002 rebuild exon 2222494 2222749 . - . gene_id "RvY_04164"; transcript_id "RvY_04164.1"; Scaffold002 rebuild transcript 2223844 2224976 . + . gene_id "RvY_04165"; transcript_id "RvY_04165.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2223844 2223963 . + . gene_id "RvY_04165"; transcript_id "RvY_04165.1"; Scaffold002 rebuild exon 2224821 2224976 . + . gene_id "RvY_04165"; transcript_id "RvY_04165.1"; Scaffold002 rebuild transcript 2226833 2227162 . + . gene_id "RvY_04166"; transcript_id "RvY_04166.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2226833 2227162 . + . gene_id "RvY_04166"; transcript_id "RvY_04166.1"; Scaffold002 rebuild transcript 2227415 2227645 . + . gene_id "RvY_04167"; transcript_id "RvY_04167.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2227415 2227645 . + . gene_id "RvY_04167"; transcript_id "RvY_04167.1"; Scaffold002 rebuild transcript 2230322 2231344 . + . gene_id "RvY_04168"; transcript_id "RvY_04168.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2230322 2231344 . + . gene_id "RvY_04168"; transcript_id "RvY_04168.1"; Scaffold002 rebuild transcript 2230247 2231395 . + . gene_id "RvY_04168"; transcript_id "RvY_04168.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2230247 2230912 . + . gene_id "RvY_04168"; transcript_id "RvY_04168.2"; Scaffold002 rebuild exon 2231375 2231395 . + . gene_id "RvY_04168"; transcript_id "RvY_04168.2"; Scaffold002 rebuild transcript 2231779 2235550 . - . gene_id "RvY_04169"; transcript_id "RvY_04169.1"; gene_name "CAP_ED"; annotation "hypothetical protein."; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; similar_genes "CNGB1_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 2231779 2232242 . - . gene_id "RvY_04169"; transcript_id "RvY_04169.1"; Scaffold002 rebuild exon 2232298 2233351 . - . gene_id "RvY_04169"; transcript_id "RvY_04169.1"; Scaffold002 rebuild exon 2233812 2234402 . - . gene_id "RvY_04169"; transcript_id "RvY_04169.1"; Scaffold002 rebuild exon 2234590 2235122 . - . gene_id "RvY_04169"; transcript_id "RvY_04169.1"; Scaffold002 rebuild exon 2235274 2235550 . - . gene_id "RvY_04169"; transcript_id "RvY_04169.1"; Scaffold002 rebuild transcript 2238650 2239613 . + . gene_id "RvY_04170"; transcript_id "RvY_04170.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2238650 2238779 . + . gene_id "RvY_04170"; transcript_id "RvY_04170.1"; Scaffold002 rebuild exon 2238862 2238899 . + . gene_id "RvY_04170"; transcript_id "RvY_04170.1"; Scaffold002 rebuild exon 2238961 2239069 . + . gene_id "RvY_04170"; transcript_id "RvY_04170.1"; Scaffold002 rebuild exon 2239249 2239353 . + . gene_id "RvY_04170"; transcript_id "RvY_04170.1"; Scaffold002 rebuild exon 2239429 2239613 . + . gene_id "RvY_04170"; transcript_id "RvY_04170.1"; Scaffold002 rebuild transcript 2241143 2241427 . + . gene_id "RvY_04171"; transcript_id "RvY_04171.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 2241143 2241427 . + . gene_id "RvY_04171"; transcript_id "RvY_04171.1"; Scaffold002 rebuild transcript 2243312 2243638 . - . gene_id "RvY_04172"; transcript_id "RvY_04172.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2243312 2243638 . - . gene_id "RvY_04172"; transcript_id "RvY_04172.1"; Scaffold002 rebuild transcript 2243974 2244609 . - . gene_id "RvY_04173"; transcript_id "RvY_04173.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2243974 2244096 . - . gene_id "RvY_04173"; transcript_id "RvY_04173.1"; Scaffold002 rebuild exon 2244430 2244609 . - . gene_id "RvY_04173"; transcript_id "RvY_04173.1"; Scaffold002 rebuild transcript 2245390 2245674 . + . gene_id "RvY_04174"; transcript_id "RvY_04174.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2245390 2245674 . + . gene_id "RvY_04174"; transcript_id "RvY_04174.1"; Scaffold002 rebuild transcript 2245678 2246766 . - . gene_id "RvY_04175"; transcript_id "RvY_04175.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2245678 2245845 . - . gene_id "RvY_04175"; transcript_id "RvY_04175.1"; Scaffold002 rebuild exon 2245942 2246121 . - . gene_id "RvY_04175"; transcript_id "RvY_04175.1"; Scaffold002 rebuild exon 2246749 2246766 . - . gene_id "RvY_04175"; transcript_id "RvY_04175.1"; Scaffold002 rebuild transcript 2248899 2251040 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold002 rebuild exon 2248899 2249204 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; Scaffold002 rebuild exon 2249301 2249458 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; Scaffold002 rebuild exon 2249561 2249750 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; Scaffold002 rebuild exon 2249814 2249965 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; Scaffold002 rebuild exon 2250055 2250246 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; Scaffold002 rebuild exon 2250944 2251040 . - . gene_id "RvY_04176"; transcript_id "RvY_04176.1"; Scaffold002 rebuild transcript 2251927 2253649 . - . gene_id "RvY_04177"; transcript_id "RvY_04177.1"; product "HOX3 zen"; gene_name "HOX_3"; annotation "HOX3 zen | putative Homeobox protein Hox-D3"; Pfam "[Homeobox]"; KO "K09303"; similar_genes "HXD3_XENLA(e-value:2.6e-26;bit-score:116.0)"; Scaffold002 rebuild exon 2251927 2252330 . - . gene_id "RvY_04177"; transcript_id "RvY_04177.1"; Scaffold002 rebuild exon 2252531 2252722 . - . gene_id "RvY_04177"; transcript_id "RvY_04177.1"; Scaffold002 rebuild exon 2252815 2253649 . - . gene_id "RvY_04177"; transcript_id "RvY_04177.1"; Scaffold002 rebuild transcript 2258411 2258722 . + . gene_id "RvY_04178"; transcript_id "RvY_04178.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2258411 2258722 . + . gene_id "RvY_04178"; transcript_id "RvY_04178.1"; Scaffold002 rebuild transcript 2260845 2261078 . - . gene_id "RvY_04179"; transcript_id "RvY_04179.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2260845 2261078 . - . gene_id "RvY_04179"; transcript_id "RvY_04179.1"; Scaffold002 rebuild transcript 2260864 2261226 . + . gene_id "RvY_04180"; transcript_id "RvY_04180.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2260864 2261226 . + . gene_id "RvY_04180"; transcript_id "RvY_04180.1"; Scaffold002 rebuild transcript 2261409 2261636 . + . gene_id "RvY_04181"; transcript_id "RvY_04181.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2261409 2261636 . + . gene_id "RvY_04181"; transcript_id "RvY_04181.1"; Scaffold002 rebuild transcript 2263325 2263573 . + . gene_id "RvY_04182"; transcript_id "RvY_04182.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2263325 2263573 . + . gene_id "RvY_04182"; transcript_id "RvY_04182.1"; Scaffold002 rebuild transcript 2263819 2264007 . + . gene_id "RvY_04183"; transcript_id "RvY_04183.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2263819 2264007 . + . gene_id "RvY_04183"; transcript_id "RvY_04183.1"; Scaffold002 rebuild transcript 2266683 2276120 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; annotation "hypothetical protein."; Pfam "[Collagen] Collagen triple helix repeat (20 copies)"; similar_genes "(1,2)COAA1_HUMAN(e-value:1.2e-17;bit-score:88.0)(3)CO4A2_HUMAN(e-value:5.5e-16;bit-score:82.0)(4)CO6A1_HUMAN(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 2266683 2266715 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2266808 2267056 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2267316 2267395 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2267486 2267639 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2267845 2267922 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2268182 2268289 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2268361 2268405 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2268505 2268609 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2268762 2268836 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2269012 2269089 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2269357 2269392 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2269578 2269586 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2269711 2269737 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2269842 2269901 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2270005 2270034 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2270116 2270142 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2270625 2270686 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2275300 2275525 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild exon 2275851 2276120 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.1"; Scaffold002 rebuild transcript 2266683 2276120 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; annotation "hypothetical protein."; Pfam "[Collagen] Collagen triple helix repeat (20 copies)"; similar_genes "(1,2)COAA1_HUMAN(e-value:1.2e-17;bit-score:88.0)(3)CO4A2_HUMAN(e-value:5.5e-16;bit-score:82.0)(4)CO6A1_HUMAN(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 2266683 2266715 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2266808 2267056 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2267316 2267395 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2267486 2267639 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2267845 2267922 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2268182 2268289 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2268361 2268405 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2268505 2268609 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2268762 2268836 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2269012 2269089 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2269357 2269392 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2269711 2269737 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2269842 2269901 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2270005 2270034 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2270116 2270142 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2270625 2270686 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2275300 2275525 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild exon 2275851 2276120 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.2"; Scaffold002 rebuild transcript 2266694 2276120 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; annotation "hypothetical protein."; Pfam "[Collagen] Collagen triple helix repeat (20 copies)"; similar_genes "(1,2)COAA1_HUMAN(e-value:1.2e-17;bit-score:88.0)(3)CO4A2_HUMAN(e-value:5.5e-16;bit-score:82.0)(4)CO6A1_HUMAN(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 2266694 2267056 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2267316 2267395 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2267486 2267639 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2267845 2267922 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2268182 2268289 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2268361 2268405 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2269012 2269089 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2269357 2269392 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2270439 2270474 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2270625 2270686 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2275300 2275525 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild exon 2275851 2276120 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.3"; Scaffold002 rebuild transcript 2265167 2269380 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; annotation "hypothetical protein."; Pfam "[Collagen] Collagen triple helix repeat (20 copies)"; similar_genes "(1,2)COAA1_HUMAN(e-value:1.2e-17;bit-score:88.0)(3)CO4A2_HUMAN(e-value:5.5e-16;bit-score:82.0)(4)CO6A1_HUMAN(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 2265167 2265346 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2265404 2265481 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2267316 2267395 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2267486 2267639 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2267845 2267922 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2268182 2268289 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2268361 2268405 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2268505 2268609 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2268762 2268836 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2269012 2269089 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild exon 2269357 2269380 . - . gene_id "RvY_04184"; transcript_id "RvY_04184.4"; Scaffold002 rebuild transcript 2278896 2287702 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "TRA1_DICDI(e-value:3.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 2278896 2282203 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; Scaffold002 rebuild exon 2282380 2282715 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; Scaffold002 rebuild exon 2284637 2285080 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; Scaffold002 rebuild exon 2285386 2285528 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; Scaffold002 rebuild exon 2287113 2287504 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; Scaffold002 rebuild exon 2287592 2287702 . - . gene_id "RvY_04185"; transcript_id "RvY_04185.1"; Scaffold002 rebuild transcript 2289260 2289703 . + . gene_id "RvY_04186"; transcript_id "RvY_04186.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2289260 2289703 . + . gene_id "RvY_04186"; transcript_id "RvY_04186.1"; Scaffold002 rebuild transcript 2291084 2291550 . + . gene_id "RvY_04187"; transcript_id "RvY_04187.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2291084 2291127 . + . gene_id "RvY_04187"; transcript_id "RvY_04187.1"; Scaffold002 rebuild exon 2291165 2291300 . + . gene_id "RvY_04187"; transcript_id "RvY_04187.1"; Scaffold002 rebuild exon 2291374 2291550 . + . gene_id "RvY_04187"; transcript_id "RvY_04187.1"; Scaffold002 rebuild transcript 2291816 2292973 . + . gene_id "RvY_04188"; transcript_id "RvY_04188.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 2291816 2292575 . + . gene_id "RvY_04188"; transcript_id "RvY_04188.1"; Scaffold002 rebuild exon 2292612 2292973 . + . gene_id "RvY_04188"; transcript_id "RvY_04188.1"; Scaffold002 rebuild transcript 2294090 2294614 . + . gene_id "RvY_04189"; transcript_id "RvY_04189.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2294090 2294614 . + . gene_id "RvY_04189"; transcript_id "RvY_04189.1"; Scaffold002 rebuild transcript 2296114 2296347 . + . gene_id "RvY_04190"; transcript_id "RvY_04190.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2296114 2296347 . + . gene_id "RvY_04190"; transcript_id "RvY_04190.1"; Scaffold002 rebuild transcript 2296656 2298921 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; gene_name "(1)K01509(2)GDA1_CD39"; annotation "(1)adenosinetriphosphatase [EC:3.6.1.3](2)hypothetical protein."; Pfam "[GDA1_CD39] GDA1/CD39 (nucleoside phosphatase) family"; CDD "GDA1/CD39 (nucleoside phosphatase) family."; EC "(1)EC3.6.1.3"; KO "(1)K01509"; Scaffold002 rebuild exon 2296656 2296730 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2296823 2297001 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2297060 2297156 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2297219 2297383 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2297470 2297808 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2298171 2298345 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2298425 2298572 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild exon 2298636 2298921 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.1"; Scaffold002 rebuild transcript 2297991 2298921 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.2"; gene_name "(1)K01509(2)GDA1_CD39"; annotation "(1)adenosinetriphosphatase [EC:3.6.1.3](2)hypothetical protein."; Pfam "[GDA1_CD39] GDA1/CD39 (nucleoside phosphatase) family"; CDD "GDA1/CD39 (nucleoside phosphatase) family."; EC "(1)EC3.6.1.3"; KO "(1)K01509"; Scaffold002 rebuild exon 2297991 2298345 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.2"; Scaffold002 rebuild exon 2298425 2298572 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.2"; Scaffold002 rebuild exon 2298636 2298921 . - . gene_id "RvY_04191"; transcript_id "RvY_04191.2"; Scaffold002 rebuild transcript 2299604 2302655 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2299604 2299858 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2300059 2300259 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2300327 2300620 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2300878 2301279 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2301383 2301508 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2301572 2301645 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2301710 2302051 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild exon 2302307 2302655 . - . gene_id "RvY_04192"; transcript_id "RvY_04192.1"; Scaffold002 rebuild transcript 2304057 2304437 . - . gene_id "RvY_04193"; transcript_id "RvY_04193.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2304057 2304437 . - . gene_id "RvY_04193"; transcript_id "RvY_04193.1"; Scaffold002 rebuild transcript 2304613 2307878 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold002 rebuild exon 2304613 2304618 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; Scaffold002 rebuild exon 2304728 2304856 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; Scaffold002 rebuild exon 2304930 2305165 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; Scaffold002 rebuild exon 2305392 2305754 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; Scaffold002 rebuild exon 2305945 2305993 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; Scaffold002 rebuild exon 2307744 2307878 . - . gene_id "RvY_04194"; transcript_id "RvY_04194.1"; Scaffold002 rebuild transcript 2310737 2311264 . + . gene_id "RvY_04195"; transcript_id "RvY_04195.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2310737 2310818 . + . gene_id "RvY_04195"; transcript_id "RvY_04195.1"; Scaffold002 rebuild exon 2311209 2311264 . + . gene_id "RvY_04195"; transcript_id "RvY_04195.1"; Scaffold002 rebuild transcript 2311569 2311814 . + . gene_id "RvY_04196"; transcript_id "RvY_04196.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2311569 2311814 . + . gene_id "RvY_04196"; transcript_id "RvY_04196.1"; Scaffold002 rebuild transcript 2312596 2314609 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2312596 2312888 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.1"; Scaffold002 rebuild exon 2313095 2313596 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.1"; Scaffold002 rebuild exon 2313677 2313779 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.1"; Scaffold002 rebuild exon 2314074 2314609 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.1"; Scaffold002 rebuild transcript 2312596 2314100 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.2"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2312596 2312888 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.2"; Scaffold002 rebuild exon 2313095 2313596 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.2"; Scaffold002 rebuild exon 2313677 2313781 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.2"; Scaffold002 rebuild exon 2314074 2314100 . + . gene_id "RvY_04197"; transcript_id "RvY_04197.2"; Scaffold002 rebuild transcript 2313962 2314599 . - . gene_id "RvY_04198"; transcript_id "RvY_04198.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2313962 2314365 . - . gene_id "RvY_04198"; transcript_id "RvY_04198.1"; Scaffold002 rebuild exon 2314530 2314599 . - . gene_id "RvY_04198"; transcript_id "RvY_04198.1"; Scaffold002 rebuild transcript 2316055 2317743 . + . gene_id "RvY_04199"; transcript_id "RvY_04199.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2316055 2316356 . + . gene_id "RvY_04199"; transcript_id "RvY_04199.1"; Scaffold002 rebuild exon 2316480 2316978 . + . gene_id "RvY_04199"; transcript_id "RvY_04199.1"; Scaffold002 rebuild exon 2317043 2317145 . + . gene_id "RvY_04199"; transcript_id "RvY_04199.1"; Scaffold002 rebuild exon 2317214 2317743 . + . gene_id "RvY_04199"; transcript_id "RvY_04199.1"; Scaffold002 rebuild transcript 2318208 2320098 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2318208 2318506 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.1"; Scaffold002 rebuild exon 2318715 2319213 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.1"; Scaffold002 rebuild exon 2319285 2319387 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.1"; Scaffold002 rebuild exon 2319468 2319734 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.1"; Scaffold002 rebuild exon 2319803 2320098 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.1"; Scaffold002 rebuild transcript 2318042 2320098 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2318042 2318049 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; Scaffold002 rebuild exon 2318243 2318506 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; Scaffold002 rebuild exon 2318715 2319213 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; Scaffold002 rebuild exon 2319285 2319387 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; Scaffold002 rebuild exon 2319468 2319734 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; Scaffold002 rebuild exon 2319803 2320098 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.2"; Scaffold002 rebuild transcript 2318208 2319392 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.3"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; Scaffold002 rebuild exon 2318208 2318506 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.3"; Scaffold002 rebuild exon 2318715 2319213 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.3"; Scaffold002 rebuild exon 2319285 2319392 . + . gene_id "RvY_04200"; transcript_id "RvY_04200.3"; Scaffold002 rebuild transcript 2320220 2320414 . - . gene_id "RvY_04201"; transcript_id "RvY_04201.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2320220 2320414 . - . gene_id "RvY_04201"; transcript_id "RvY_04201.1"; Scaffold002 rebuild transcript 2321284 2322486 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.1"; gene_name "RNase_T2"; annotation "hypothetical protein."; Pfam "[Ribonuclease_T2] Ribonuclease T2 family"; CDD "Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of ""self"" pollen."; Scaffold002 rebuild exon 2321284 2322116 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.1"; Scaffold002 rebuild exon 2322181 2322296 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.1"; Scaffold002 rebuild exon 2322398 2322486 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.1"; Scaffold002 rebuild transcript 2321284 2322099 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.2"; gene_name "RNase_T2"; annotation "hypothetical protein."; Pfam "[Ribonuclease_T2] Ribonuclease T2 family"; CDD "Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of ""self"" pollen."; Scaffold002 rebuild exon 2321284 2322099 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.2"; Scaffold002 rebuild transcript 2321284 2322099 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.3"; gene_name "RNase_T2"; annotation "hypothetical protein."; Pfam "[Ribonuclease_T2] Ribonuclease T2 family"; CDD "Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of ""self"" pollen."; Scaffold002 rebuild exon 2321284 2321456 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.3"; Scaffold002 rebuild exon 2321526 2322099 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.3"; Scaffold002 rebuild transcript 2321284 2322030 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.4"; gene_name "RNase_T2"; annotation "hypothetical protein."; Pfam "[Ribonuclease_T2] Ribonuclease T2 family"; CDD "Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of ""self"" pollen."; Scaffold002 rebuild exon 2321284 2322030 . - . gene_id "RvY_04202"; transcript_id "RvY_04202.4"; Scaffold002 rebuild transcript 2325812 2327625 . - . gene_id "RvY_04203"; transcript_id "RvY_04203.1"; gene_name "Tdh"; annotation "hypothetical protein."; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N] Zinc-binding dehydrogenase|[ADH_N_assoc] Alcohol dehydrogenase GroES-associated"; CDD "Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]"; Scaffold002 rebuild exon 2325812 2326461 . - . gene_id "RvY_04203"; transcript_id "RvY_04203.1"; Scaffold002 rebuild exon 2326800 2327625 . - . gene_id "RvY_04203"; transcript_id "RvY_04203.1"; Scaffold002 rebuild transcript 2328372 2329712 . + . gene_id "RvY_04204"; transcript_id "RvY_04204.1"; gene_name "ATP1B"; annotation "sodium/potassium-transporting ATPase subunit beta"; Pfam "[Na_K-ATPase] Sodium / potassium ATPase beta chain"; KO "K01540"; similar_genes "AT1B1_CAEEL(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 2328372 2328660 . + . gene_id "RvY_04204"; transcript_id "RvY_04204.1"; Scaffold002 rebuild exon 2328856 2328981 . + . gene_id "RvY_04204"; transcript_id "RvY_04204.1"; Scaffold002 rebuild exon 2329049 2329254 . + . gene_id "RvY_04204"; transcript_id "RvY_04204.1"; Scaffold002 rebuild exon 2329332 2329712 . + . gene_id "RvY_04204"; transcript_id "RvY_04204.1"; Scaffold002 rebuild transcript 2329881 2331329 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 2329881 2330017 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; Scaffold002 rebuild exon 2330109 2330292 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; Scaffold002 rebuild exon 2330350 2330574 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; Scaffold002 rebuild exon 2330635 2331043 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; Scaffold002 rebuild exon 2331132 2331175 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; Scaffold002 rebuild exon 2331258 2331329 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.1"; Scaffold002 rebuild transcript 2329881 2331329 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 2329881 2330017 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild exon 2330109 2330292 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild exon 2330350 2330574 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild exon 2330635 2330870 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild exon 2330931 2331043 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild exon 2331132 2331175 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild exon 2331258 2331329 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.2"; Scaffold002 rebuild transcript 2329881 2331057 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.3"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 2329881 2330017 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.3"; Scaffold002 rebuild exon 2330109 2330292 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.3"; Scaffold002 rebuild exon 2330350 2330574 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.3"; Scaffold002 rebuild exon 2330635 2330870 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.3"; Scaffold002 rebuild exon 2330931 2331057 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.3"; Scaffold002 rebuild transcript 2329881 2331009 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.4"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 2329881 2330017 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.4"; Scaffold002 rebuild exon 2330109 2330292 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.4"; Scaffold002 rebuild exon 2330350 2330574 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.4"; Scaffold002 rebuild exon 2330635 2330870 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.4"; Scaffold002 rebuild exon 2330931 2331009 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.4"; Scaffold002 rebuild transcript 2329881 2330841 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.5"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold002 rebuild exon 2329881 2330017 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.5"; Scaffold002 rebuild exon 2330109 2330292 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.5"; Scaffold002 rebuild exon 2330350 2330574 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.5"; Scaffold002 rebuild exon 2330635 2330841 . - . gene_id "RvY_04205"; transcript_id "RvY_04205.5"; Scaffold002 rebuild transcript 2333754 2334397 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2333754 2333779 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.1"; Scaffold002 rebuild exon 2333879 2333962 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.1"; Scaffold002 rebuild exon 2334105 2334257 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.1"; Scaffold002 rebuild exon 2334340 2334397 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.1"; Scaffold002 rebuild transcript 2334225 2334683 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2334225 2334257 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.2"; Scaffold002 rebuild exon 2334340 2334426 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.2"; Scaffold002 rebuild exon 2334510 2334683 . + . gene_id "RvY_04206"; transcript_id "RvY_04206.2"; Scaffold002 rebuild transcript 2338703 2343152 . + . gene_id "RvY_04207"; transcript_id "RvY_04207.1"; gene_name "NKX2-6"; annotation "homeobox protein Nkx-2.6"; Pfam "[Homeobox]"; KO "K09346"; similar_genes "NKX25_XENLA(e-value:1.1e-22;bit-score:104.0)"; Scaffold002 rebuild exon 2338703 2338928 . + . gene_id "RvY_04207"; transcript_id "RvY_04207.1"; Scaffold002 rebuild exon 2342127 2342428 . + . gene_id "RvY_04207"; transcript_id "RvY_04207.1"; Scaffold002 rebuild exon 2342727 2343152 . + . gene_id "RvY_04207"; transcript_id "RvY_04207.1"; Scaffold002 rebuild transcript 2344539 2348379 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold002 rebuild exon 2344539 2344893 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; Scaffold002 rebuild exon 2345087 2345289 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; Scaffold002 rebuild exon 2345418 2345584 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; Scaffold002 rebuild exon 2345670 2345936 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; Scaffold002 rebuild exon 2346129 2346606 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; Scaffold002 rebuild exon 2348173 2348379 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.1"; Scaffold002 rebuild transcript 2344539 2346942 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold002 rebuild exon 2344539 2344893 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; Scaffold002 rebuild exon 2345087 2345289 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; Scaffold002 rebuild exon 2345418 2345584 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; Scaffold002 rebuild exon 2345670 2345936 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; Scaffold002 rebuild exon 2346129 2346606 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; Scaffold002 rebuild exon 2346901 2346942 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.2"; Scaffold002 rebuild transcript 2344999 2346942 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.3"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold002 rebuild exon 2344999 2345289 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.3"; Scaffold002 rebuild exon 2345418 2345584 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.3"; Scaffold002 rebuild exon 2345670 2345936 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.3"; Scaffold002 rebuild exon 2346129 2346606 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.3"; Scaffold002 rebuild exon 2346901 2346942 . - . gene_id "RvY_04208"; transcript_id "RvY_04208.3"; Scaffold002 rebuild transcript 2350045 2350790 . + . gene_id "RvY_04209"; transcript_id "RvY_04209.1"; gene_name "Oscp1"; annotation "hypothetical protein."; Pfam "[Oscp1] Organic solute transport protein 1"; CDD "Organic solute transport protein 1. Oscp1 is a family of proteins conserved from plants to humans. It is called organic solute transport protein or oxido-red- nitro domain-containing protein 1, however no reference could be find to confirm the function of the protein."; Scaffold002 rebuild exon 2350045 2350231 . + . gene_id "RvY_04209"; transcript_id "RvY_04209.1"; Scaffold002 rebuild exon 2350294 2350403 . + . gene_id "RvY_04209"; transcript_id "RvY_04209.1"; Scaffold002 rebuild exon 2350474 2350518 . + . gene_id "RvY_04209"; transcript_id "RvY_04209.1"; Scaffold002 rebuild exon 2350611 2350790 . + . gene_id "RvY_04209"; transcript_id "RvY_04209.1"; Scaffold002 rebuild transcript 2351062 2351939 . + . gene_id "RvY_04210"; transcript_id "RvY_04210.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2351062 2351126 . + . gene_id "RvY_04210"; transcript_id "RvY_04210.1"; Scaffold002 rebuild exon 2351195 2351362 . + . gene_id "RvY_04210"; transcript_id "RvY_04210.1"; Scaffold002 rebuild exon 2351440 2351545 . + . gene_id "RvY_04210"; transcript_id "RvY_04210.1"; Scaffold002 rebuild exon 2351625 2351939 . + . gene_id "RvY_04210"; transcript_id "RvY_04210.1"; Scaffold002 rebuild transcript 2352582 2355283 . + . gene_id "RvY_04211"; transcript_id "RvY_04211.1"; gene_name "NAP1L1"; annotation "nucleosome assembly protein 1-like 1"; Pfam "[NAP] Nucleosome assembly protein (NAP)"; KO "K11279"; Scaffold002 rebuild exon 2352582 2353298 . + . gene_id "RvY_04211"; transcript_id "RvY_04211.1"; Scaffold002 rebuild exon 2354831 2355283 . + . gene_id "RvY_04211"; transcript_id "RvY_04211.1"; Scaffold002 rebuild transcript 2357659 2359195 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2357659 2357855 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; Scaffold002 rebuild exon 2357917 2358018 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; Scaffold002 rebuild exon 2358083 2358442 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; Scaffold002 rebuild exon 2358586 2358790 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; Scaffold002 rebuild exon 2358852 2358986 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; Scaffold002 rebuild exon 2359049 2359195 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.1"; Scaffold002 rebuild transcript 2356783 2357771 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2356783 2356902 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.2"; Scaffold002 rebuild exon 2356976 2357153 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.2"; Scaffold002 rebuild exon 2357224 2357542 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.2"; Scaffold002 rebuild exon 2357621 2357771 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.2"; Scaffold002 rebuild transcript 2357659 2358446 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2357659 2357855 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.3"; Scaffold002 rebuild exon 2357917 2358018 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.3"; Scaffold002 rebuild exon 2358083 2358446 . + . gene_id "RvY_04212"; transcript_id "RvY_04212.3"; Scaffold002 rebuild transcript 2360115 2361554 . + . gene_id "RvY_04213"; transcript_id "RvY_04213.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2360115 2360189 . + . gene_id "RvY_04213"; transcript_id "RvY_04213.1"; Scaffold002 rebuild exon 2361375 2361554 . + . gene_id "RvY_04213"; transcript_id "RvY_04213.1"; Scaffold002 rebuild transcript 2361881 2362168 . + . gene_id "RvY_04214"; transcript_id "RvY_04214.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 2361881 2362168 . + . gene_id "RvY_04214"; transcript_id "RvY_04214.1"; Scaffold002 rebuild transcript 2362613 2363092 . + . gene_id "RvY_04215"; transcript_id "RvY_04215.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2362613 2363092 . + . gene_id "RvY_04215"; transcript_id "RvY_04215.1"; Scaffold002 rebuild transcript 2363973 2365333 . - . gene_id "RvY_04216"; transcript_id "RvY_04216.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2363973 2363990 . - . gene_id "RvY_04216"; transcript_id "RvY_04216.1"; Scaffold002 rebuild exon 2364328 2364510 . - . gene_id "RvY_04216"; transcript_id "RvY_04216.1"; Scaffold002 rebuild exon 2365295 2365333 . - . gene_id "RvY_04216"; transcript_id "RvY_04216.1"; Scaffold002 rebuild transcript 2366182 2369769 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; annotation "putative Xenotropic and polytropic retrovirus receptor 1 homolog"; Pfam "[EXS] EXS family|[SPX]"; similar_genes "XPR1_DANRE(e-value:1.6e-32;bit-score:137.0)"; Scaffold002 rebuild exon 2366182 2366437 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2366504 2366677 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2366742 2367051 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2367286 2367637 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2367712 2367891 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2368054 2368310 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2368401 2368479 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2368545 2368625 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2368741 2368842 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2368913 2369196 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2369317 2369448 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2369590 2369638 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild exon 2369701 2369769 . - . gene_id "RvY_04217"; transcript_id "RvY_04217.1"; Scaffold002 rebuild transcript 2370475 2371132 . + . gene_id "RvY_04218"; transcript_id "RvY_04218.1"; gene_name "Cyt_c_Oxidase_VIc"; annotation "hypothetical protein."; Pfam "[COX6C] Cytochrome c oxidase subunit VIc"; CDD "Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer."; Scaffold002 rebuild exon 2370475 2370701 . + . gene_id "RvY_04218"; transcript_id "RvY_04218.1"; Scaffold002 rebuild exon 2370766 2370867 . + . gene_id "RvY_04218"; transcript_id "RvY_04218.1"; Scaffold002 rebuild exon 2371102 2371132 . + . gene_id "RvY_04218"; transcript_id "RvY_04218.1"; Scaffold002 rebuild transcript 2372173 2376265 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; gene_name "TR_FER"; annotation "hypothetical protein."; Pfam "[Transferrin]|[Phosphonate-bd] ABC transporter, phosphonate, periplasmic substrate-binding protein"; CDD "Transferrin."; Scaffold002 rebuild exon 2372173 2372852 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2373074 2373222 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2373347 2373601 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2373688 2373865 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2373941 2374299 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2374365 2374483 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2374551 2374681 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2374803 2375477 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild exon 2375701 2376265 . + . gene_id "RvY_04219"; transcript_id "RvY_04219.1"; Scaffold002 rebuild transcript 2378088 2381353 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; gene_name "IRK"; annotation "hypothetical protein."; Pfam "(2)[Ion_trans_2] Ion channel|[IRK] Inward rectifier potassium channel"; CDD "Inward rectifier potassium channel."; similar_genes "IRK3_HUMAN(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 2378088 2378167 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2378409 2378604 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2378686 2378774 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2378833 2379060 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2379189 2379384 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2379589 2379723 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2379784 2379868 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2379933 2380084 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2380403 2380789 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2381065 2381250 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild exon 2381321 2381353 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.1"; Scaffold002 rebuild transcript 2378088 2380333 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; gene_name "IRK"; annotation "hypothetical protein."; Pfam "(2)[Ion_trans_2] Ion channel|[IRK] Inward rectifier potassium channel"; CDD "Inward rectifier potassium channel."; similar_genes "IRK3_HUMAN(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 2378088 2378167 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2378409 2378604 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2378686 2378774 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2378833 2379060 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2379189 2379384 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2379589 2379723 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2379784 2379868 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild exon 2379933 2380333 . + . gene_id "RvY_04220"; transcript_id "RvY_04220.2"; Scaffold002 rebuild transcript 2382435 2382999 . - . gene_id "RvY_04221"; transcript_id "RvY_04221.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2382435 2382673 . - . gene_id "RvY_04221"; transcript_id "RvY_04221.1"; Scaffold002 rebuild exon 2382756 2382804 . - . gene_id "RvY_04221"; transcript_id "RvY_04221.1"; Scaffold002 rebuild exon 2382892 2382999 . - . gene_id "RvY_04221"; transcript_id "RvY_04221.1"; Scaffold002 rebuild transcript 2386547 2387360 . - . gene_id "RvY_04222"; transcript_id "RvY_04222.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 2386547 2386801 . - . gene_id "RvY_04222"; transcript_id "RvY_04222.1"; Scaffold002 rebuild exon 2386868 2387001 . - . gene_id "RvY_04222"; transcript_id "RvY_04222.1"; Scaffold002 rebuild exon 2387073 2387231 . - . gene_id "RvY_04222"; transcript_id "RvY_04222.1"; Scaffold002 rebuild exon 2387303 2387360 . - . gene_id "RvY_04222"; transcript_id "RvY_04222.1"; Scaffold002 rebuild transcript 2387422 2390008 . - . gene_id "RvY_04223"; transcript_id "RvY_04223.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 2387422 2388032 . - . gene_id "RvY_04223"; transcript_id "RvY_04223.1"; Scaffold002 rebuild exon 2388103 2388285 . - . gene_id "RvY_04223"; transcript_id "RvY_04223.1"; Scaffold002 rebuild exon 2388617 2388891 . - . gene_id "RvY_04223"; transcript_id "RvY_04223.1"; Scaffold002 rebuild exon 2389335 2390008 . - . gene_id "RvY_04223"; transcript_id "RvY_04223.1"; Scaffold002 rebuild transcript 2394689 2394958 . - . gene_id "RvY_04224"; transcript_id "RvY_04224.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2394689 2394958 . - . gene_id "RvY_04224"; transcript_id "RvY_04224.1"; Scaffold002 rebuild transcript 2396420 2398186 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2396420 2396593 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2396670 2396756 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2396840 2396991 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2397139 2397221 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2397345 2397392 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2397460 2397510 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2397871 2397918 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild exon 2397999 2398186 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.1"; Scaffold002 rebuild transcript 2396420 2398186 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2396420 2396593 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; Scaffold002 rebuild exon 2396670 2396756 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; Scaffold002 rebuild exon 2396840 2396991 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; Scaffold002 rebuild exon 2397136 2397221 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; Scaffold002 rebuild exon 2397871 2397918 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; Scaffold002 rebuild exon 2397999 2398186 . - . gene_id "RvY_04225"; transcript_id "RvY_04225.2"; Scaffold002 rebuild transcript 2399756 2400153 . + . gene_id "RvY_04226"; transcript_id "RvY_04226.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2399756 2399824 . + . gene_id "RvY_04226"; transcript_id "RvY_04226.1"; Scaffold002 rebuild exon 2400019 2400153 . + . gene_id "RvY_04226"; transcript_id "RvY_04226.1"; Scaffold002 rebuild transcript 2401052 2405684 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; annotation "hypothetical protein."; Pfam "[DOMON]|[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; EC "EC1.14.17.-"; similar_genes "TBH1_DROME(e-value:1.8e-10;bit-score:64.0)"; Scaffold002 rebuild exon 2401052 2401360 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2401440 2401604 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2401677 2402027 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2402246 2402410 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2402473 2402874 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2402939 2403085 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2403145 2403348 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2403622 2403708 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2403840 2404022 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2404128 2404230 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2404294 2404389 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2404462 2404538 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2404601 2404655 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2404735 2404862 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2404945 2405004 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2405076 2405206 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2405302 2405536 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild exon 2405610 2405684 . + . gene_id "RvY_04227"; transcript_id "RvY_04227.1"; Scaffold002 rebuild transcript 2408090 2409501 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2408090 2408327 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; Scaffold002 rebuild exon 2408414 2408457 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; Scaffold002 rebuild exon 2408728 2408766 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; Scaffold002 rebuild exon 2408865 2408942 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; Scaffold002 rebuild exon 2409182 2409319 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; Scaffold002 rebuild exon 2409403 2409501 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.1"; Scaffold002 rebuild transcript 2409436 2412525 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2409436 2409453 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; Scaffold002 rebuild exon 2409505 2409616 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; Scaffold002 rebuild exon 2411446 2411504 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; Scaffold002 rebuild exon 2411590 2411728 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; Scaffold002 rebuild exon 2411797 2411881 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; Scaffold002 rebuild exon 2412420 2412525 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.2"; Scaffold002 rebuild transcript 2409436 2411885 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.3"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2409436 2409453 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.3"; Scaffold002 rebuild exon 2409505 2409616 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.3"; Scaffold002 rebuild exon 2411446 2411504 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.3"; Scaffold002 rebuild exon 2411590 2411728 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.3"; Scaffold002 rebuild exon 2411797 2411885 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.3"; Scaffold002 rebuild transcript 2409483 2411881 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.4"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2409483 2409616 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.4"; Scaffold002 rebuild exon 2411446 2411504 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.4"; Scaffold002 rebuild exon 2411590 2411728 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.4"; Scaffold002 rebuild exon 2411797 2411881 . + . gene_id "RvY_04228"; transcript_id "RvY_04228.4"; Scaffold002 rebuild transcript 2411576 2411866 . - . gene_id "RvY_04229"; transcript_id "RvY_04229.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2411576 2411866 . - . gene_id "RvY_04229"; transcript_id "RvY_04229.1"; Scaffold002 rebuild transcript 2413160 2413345 . + . gene_id "RvY_04230"; transcript_id "RvY_04230.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2413160 2413345 . + . gene_id "RvY_04230"; transcript_id "RvY_04230.1"; Scaffold002 rebuild transcript 2413692 2414106 . + . gene_id "RvY_04231"; transcript_id "RvY_04231.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2413692 2413721 . + . gene_id "RvY_04231"; transcript_id "RvY_04231.1"; Scaffold002 rebuild exon 2414020 2414106 . + . gene_id "RvY_04231"; transcript_id "RvY_04231.1"; Scaffold002 rebuild transcript 2414343 2416290 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.-.-|EC1.14.14.1"; KO "K07418"; similar_genes "C82A1_PEA(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 2414343 2414563 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; Scaffold002 rebuild exon 2414618 2414739 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; Scaffold002 rebuild exon 2414879 2415118 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; Scaffold002 rebuild exon 2415204 2415552 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; Scaffold002 rebuild exon 2415609 2415835 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; Scaffold002 rebuild exon 2415971 2416290 . + . gene_id "RvY_04232"; transcript_id "RvY_04232.1"; Scaffold002 rebuild transcript 2416500 2417375 . - . gene_id "RvY_04233"; transcript_id "RvY_04233.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2416500 2416597 . - . gene_id "RvY_04233"; transcript_id "RvY_04233.1"; Scaffold002 rebuild exon 2417333 2417375 . - . gene_id "RvY_04233"; transcript_id "RvY_04233.1"; Scaffold002 rebuild transcript 2418339 2420783 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1|EC1.14.99.9"; KO "K07418"; similar_genes "CP17A_HORSE(e-value:2.0e-07;bit-score:54.0)"; Scaffold002 rebuild exon 2418339 2418691 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; Scaffold002 rebuild exon 2418809 2418933 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; Scaffold002 rebuild exon 2419042 2419281 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; Scaffold002 rebuild exon 2419677 2420025 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; Scaffold002 rebuild exon 2420094 2420320 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; Scaffold002 rebuild exon 2420464 2420783 . + . gene_id "RvY_04234"; transcript_id "RvY_04234.1"; Scaffold002 rebuild transcript 2421062 2425578 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERC_ANOGA(e-value:7.0e-14;bit-score:75.0)"; Scaffold002 rebuild exon 2421062 2421154 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2421253 2421325 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2421417 2421522 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2421591 2421738 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2421803 2421936 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2422007 2422242 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2422627 2423224 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2423756 2423935 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2424291 2424464 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2424578 2424732 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2424888 2425092 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild exon 2425260 2425578 . - . gene_id "RvY_04235"; transcript_id "RvY_04235.1"; Scaffold002 rebuild transcript 2427955 2430084 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; gene_name "eRF-1"; annotation "Eukaryotic peptide chain release factor subunit 1"; Pfam "[eRF1_1] eRF1 domain 1|[eRF1_3] eRF1 domain 3|[eRF1_2] eRF1 domain 2"; CDD "peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1."; KO "K03265"; similar_genes "ERF1_POLMI(e-value:1.2e-166;bit-score:583.0)"; Scaffold002 rebuild exon 2427955 2428197 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild exon 2428263 2428483 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild exon 2428751 2428880 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild exon 2428944 2429134 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild exon 2429215 2429353 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild exon 2429528 2429667 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild exon 2429817 2430084 . - . gene_id "RvY_04236"; transcript_id "RvY_04236.1"; Scaffold002 rebuild transcript 2430683 2431183 . - . gene_id "RvY_04237"; transcript_id "RvY_04237.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2430683 2430888 . - . gene_id "RvY_04237"; transcript_id "RvY_04237.1"; Scaffold002 rebuild exon 2431147 2431183 . - . gene_id "RvY_04237"; transcript_id "RvY_04237.1"; Scaffold002 rebuild transcript 2434517 2439383 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; gene_name "PRK07044"; annotation "Alpha-adducin"; Pfam "[Aldolase_II] Class II Aldolase and Adducin N-terminal domain"; CDD "aldolase_II super-family; Provisional"; similar_genes "ADDA_HUMAN(e-value:4.9e-72;bit-score:268.0)"; Scaffold002 rebuild exon 2434517 2434795 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2434871 2434997 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2435329 2435483 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2435945 2436175 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2436400 2436642 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2436716 2436889 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2436954 2437090 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2437304 2437433 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2437506 2437712 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2438157 2438520 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2438685 2438732 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2438890 2438946 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2439071 2439126 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild exon 2439237 2439383 . + . gene_id "RvY_04238"; transcript_id "RvY_04238.1"; Scaffold002 rebuild transcript 2439795 2441403 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; gene_name "PSMD4"; annotation "putative 26S proteasome non-ATPase regulatory subunit 4"; Pfam "[UIM] Ubiquitin interaction motif|[VWA_2] von Willebrand factor type A domain"; CDD "26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association."; KO "K03029"; similar_genes "PSMD4_MOUSE(e-value:1.4e-29;bit-score:127.0)"; Scaffold002 rebuild exon 2439795 2439844 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild exon 2439916 2440192 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild exon 2440365 2440652 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild exon 2440828 2440914 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild exon 2440981 2441092 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild exon 2441158 2441298 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild exon 2441378 2441403 . - . gene_id "RvY_04239"; transcript_id "RvY_04239.1"; Scaffold002 rebuild transcript 2444119 2445258 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.1"; gene_name "(1)qor(2,3)Qor"; annotation "(1)putative Quinone oxidoreductase(2,3)hypothetical protein."; Pfam "(2,3)[ADH_N] Alcohol dehydrogenase GroES-like domain|(1)[ADH_zinc_N_2] Zinc-binding dehydrogenase|(1)[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]"; EC "EC1.6.5.5"; KO "(1)K00344"; similar_genes "(1)QOR_CAVPO(e-value:3.5e-28;bit-score:123.0)(2,3)QOR_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold002 rebuild exon 2444119 2444285 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.1"; Scaffold002 rebuild exon 2444366 2444567 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.1"; Scaffold002 rebuild exon 2444837 2445136 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.1"; Scaffold002 rebuild exon 2445196 2445258 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.1"; Scaffold002 rebuild transcript 2443448 2444179 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.2"; gene_name "(1)qor(2,3)Qor"; annotation "(1)putative Quinone oxidoreductase(2,3)hypothetical protein."; Pfam "(2,3)[ADH_N] Alcohol dehydrogenase GroES-like domain|(1)[ADH_zinc_N_2] Zinc-binding dehydrogenase|(1)[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]"; EC "EC1.6.5.5"; KO "(1)K00344"; similar_genes "(1)QOR_CAVPO(e-value:3.5e-28;bit-score:123.0)(2,3)QOR_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold002 rebuild exon 2443448 2443636 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.2"; Scaffold002 rebuild exon 2443748 2443911 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.2"; Scaffold002 rebuild exon 2444119 2444179 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.2"; Scaffold002 rebuild transcript 2443448 2443972 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.3"; gene_name "(1)qor(2,3)Qor"; annotation "(1)putative Quinone oxidoreductase(2,3)hypothetical protein."; Pfam "(2,3)[ADH_N] Alcohol dehydrogenase GroES-like domain|(1)[ADH_zinc_N_2] Zinc-binding dehydrogenase|(1)[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]"; EC "EC1.6.5.5"; KO "(1)K00344"; similar_genes "(1)QOR_CAVPO(e-value:3.5e-28;bit-score:123.0)(2,3)QOR_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold002 rebuild exon 2443448 2443636 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.3"; Scaffold002 rebuild exon 2443748 2443972 . + . gene_id "RvY_04240"; transcript_id "RvY_04240.3"; Scaffold002 rebuild transcript 2446218 2448230 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2446218 2446350 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; Scaffold002 rebuild exon 2446428 2446558 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; Scaffold002 rebuild exon 2446622 2446691 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; Scaffold002 rebuild exon 2446751 2447007 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; Scaffold002 rebuild exon 2447211 2447419 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; Scaffold002 rebuild exon 2448050 2448230 . - . gene_id "RvY_04241"; transcript_id "RvY_04241.1"; Scaffold002 rebuild transcript 2449598 2452405 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; annotation "hypothetical protein."; Pfam "[DUF747] Eukaryotic membrane protein family"; similar_genes "TAPT1_XENLA(e-value:1.7e-23;bit-score:107.0)"; Scaffold002 rebuild exon 2449598 2449661 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2449736 2449927 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2450138 2450268 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2450339 2450662 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2450726 2450870 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2450955 2451052 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2451203 2451353 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2451445 2451617 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2451679 2451824 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild exon 2452087 2452405 . + . gene_id "RvY_04242"; transcript_id "RvY_04242.1"; Scaffold002 rebuild transcript 2452986 2454878 . + . gene_id "RvY_04243"; transcript_id "RvY_04243.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2452986 2453335 . + . gene_id "RvY_04243"; transcript_id "RvY_04243.1"; Scaffold002 rebuild exon 2453734 2454441 . + . gene_id "RvY_04243"; transcript_id "RvY_04243.1"; Scaffold002 rebuild exon 2454521 2454878 . + . gene_id "RvY_04243"; transcript_id "RvY_04243.1"; Scaffold002 rebuild transcript 2457656 2458394 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2457656 2457874 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.1"; Scaffold002 rebuild exon 2457957 2458103 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.1"; Scaffold002 rebuild exon 2458200 2458394 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.1"; Scaffold002 rebuild transcript 2457364 2458172 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2457364 2457436 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.2"; Scaffold002 rebuild exon 2457693 2457874 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.2"; Scaffold002 rebuild exon 2457957 2458172 . + . gene_id "RvY_04244"; transcript_id "RvY_04244.2"; Scaffold002 rebuild transcript 2460064 2461306 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2460064 2460148 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.1"; Scaffold002 rebuild exon 2460205 2460638 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.1"; Scaffold002 rebuild exon 2460704 2460983 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.1"; Scaffold002 rebuild exon 2461115 2461178 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.1"; Scaffold002 rebuild exon 2461285 2461306 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.1"; Scaffold002 rebuild transcript 2460064 2461306 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2460064 2460148 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; Scaffold002 rebuild exon 2460205 2460638 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; Scaffold002 rebuild exon 2460704 2460728 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; Scaffold002 rebuild exon 2460798 2460983 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; Scaffold002 rebuild exon 2461115 2461178 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; Scaffold002 rebuild exon 2461285 2461306 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.2"; Scaffold002 rebuild transcript 2460064 2460997 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2460064 2460148 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.3"; Scaffold002 rebuild exon 2460205 2460638 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.3"; Scaffold002 rebuild exon 2460704 2460997 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.3"; Scaffold002 rebuild transcript 2460064 2461031 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2460064 2460148 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.4"; Scaffold002 rebuild exon 2460205 2460638 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.4"; Scaffold002 rebuild exon 2460704 2460728 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.4"; Scaffold002 rebuild exon 2460798 2460903 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.4"; Scaffold002 rebuild exon 2461013 2461031 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.4"; Scaffold002 rebuild transcript 2461172 2462059 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.5"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2461172 2461178 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.5"; Scaffold002 rebuild exon 2461285 2461326 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.5"; Scaffold002 rebuild exon 2461406 2461525 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.5"; Scaffold002 rebuild exon 2461603 2461724 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.5"; Scaffold002 rebuild exon 2461778 2462059 . + . gene_id "RvY_04245"; transcript_id "RvY_04245.5"; Scaffold002 rebuild transcript 2462440 2462721 . - . gene_id "RvY_04246"; transcript_id "RvY_04246.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2462440 2462721 . - . gene_id "RvY_04246"; transcript_id "RvY_04246.1"; Scaffold002 rebuild transcript 2465999 2466217 . + . gene_id "RvY_04247"; transcript_id "RvY_04247.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2465999 2466217 . + . gene_id "RvY_04247"; transcript_id "RvY_04247.1"; Scaffold002 rebuild transcript 2466373 2466981 . + . gene_id "RvY_04248"; transcript_id "RvY_04248.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold002 rebuild exon 2466373 2466981 . + . gene_id "RvY_04248"; transcript_id "RvY_04248.1"; Scaffold002 rebuild transcript 2470930 2472955 . + . gene_id "RvY_04249"; transcript_id "RvY_04249.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2470930 2471101 . + . gene_id "RvY_04249"; transcript_id "RvY_04249.1"; Scaffold002 rebuild exon 2472311 2472528 . + . gene_id "RvY_04249"; transcript_id "RvY_04249.1"; Scaffold002 rebuild exon 2472821 2472955 . + . gene_id "RvY_04249"; transcript_id "RvY_04249.1"; Scaffold002 rebuild transcript 2473743 2474589 . - . gene_id "RvY_04250"; transcript_id "RvY_04250.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2473743 2474198 . - . gene_id "RvY_04250"; transcript_id "RvY_04250.1"; Scaffold002 rebuild exon 2474488 2474589 . - . gene_id "RvY_04250"; transcript_id "RvY_04250.1"; Scaffold002 rebuild transcript 2475389 2475583 . + . gene_id "RvY_04251"; transcript_id "RvY_04251.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2475389 2475583 . + . gene_id "RvY_04251"; transcript_id "RvY_04251.1"; Scaffold002 rebuild transcript 2475670 2475870 . + . gene_id "RvY_04252"; transcript_id "RvY_04252.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2475670 2475870 . + . gene_id "RvY_04252"; transcript_id "RvY_04252.1"; Scaffold002 rebuild transcript 2476096 2476692 . + . gene_id "RvY_04253"; transcript_id "RvY_04253.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2476096 2476692 . + . gene_id "RvY_04253"; transcript_id "RvY_04253.1"; Scaffold002 rebuild transcript 2477277 2478230 . + . gene_id "RvY_04254"; transcript_id "RvY_04254.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 2477277 2478230 . + . gene_id "RvY_04254"; transcript_id "RvY_04254.1"; Scaffold002 rebuild transcript 2478756 2479597 . - . gene_id "RvY_04255"; transcript_id "RvY_04255.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold002 rebuild exon 2478756 2478913 . - . gene_id "RvY_04255"; transcript_id "RvY_04255.1"; Scaffold002 rebuild exon 2478977 2479310 . - . gene_id "RvY_04255"; transcript_id "RvY_04255.1"; Scaffold002 rebuild exon 2479373 2479597 . - . gene_id "RvY_04255"; transcript_id "RvY_04255.1"; Scaffold002 rebuild transcript 2482628 2483947 . + . gene_id "RvY_04256"; transcript_id "RvY_04256.1"; gene_name "TyrKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; Scaffold002 rebuild exon 2482628 2483947 . + . gene_id "RvY_04256"; transcript_id "RvY_04256.1"; Scaffold002 rebuild transcript 2484965 2485168 . + . gene_id "RvY_04257"; transcript_id "RvY_04257.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2484965 2485168 . + . gene_id "RvY_04257"; transcript_id "RvY_04257.1"; Scaffold002 rebuild transcript 2485083 2485757 . - . gene_id "RvY_04258"; transcript_id "RvY_04258.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2485083 2485168 . - . gene_id "RvY_04258"; transcript_id "RvY_04258.1"; Scaffold002 rebuild exon 2485637 2485757 . - . gene_id "RvY_04258"; transcript_id "RvY_04258.1"; Scaffold002 rebuild transcript 2486361 2486839 . + . gene_id "RvY_04259"; transcript_id "RvY_04259.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2486361 2486657 . + . gene_id "RvY_04259"; transcript_id "RvY_04259.1"; Scaffold002 rebuild exon 2486786 2486839 . + . gene_id "RvY_04259"; transcript_id "RvY_04259.1"; Scaffold002 rebuild transcript 2486841 2488304 . + . gene_id "RvY_04260"; transcript_id "RvY_04260.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2486841 2486993 . + . gene_id "RvY_04260"; transcript_id "RvY_04260.1"; Scaffold002 rebuild exon 2487087 2487240 . + . gene_id "RvY_04260"; transcript_id "RvY_04260.1"; Scaffold002 rebuild exon 2487603 2487769 . + . gene_id "RvY_04260"; transcript_id "RvY_04260.1"; Scaffold002 rebuild exon 2487873 2488304 . + . gene_id "RvY_04260"; transcript_id "RvY_04260.1"; Scaffold002 rebuild transcript 2489340 2492222 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; gene_name "ZZ_PCMF_like"; annotation "hypothetical protein."; Pfam "[Di19] Drought induced 19 protein (Di19)|[ZZ] Zinc finger, ZZ type"; CDD "Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination."; EC "EC6.3.2.-"; similar_genes "KCMF1_BOVIN(e-value:1.9e-18;bit-score:90.0)"; Scaffold002 rebuild exon 2489340 2489361 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2489457 2489624 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2489685 2489824 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2490019 2490129 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2490214 2490429 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2490638 2490782 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2490978 2491392 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild exon 2491865 2492222 . + . gene_id "RvY_04261"; transcript_id "RvY_04261.1"; Scaffold002 rebuild transcript 2492647 2492990 . - . gene_id "RvY_04262"; transcript_id "RvY_04262.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2492647 2492835 . - . gene_id "RvY_04262"; transcript_id "RvY_04262.1"; Scaffold002 rebuild exon 2492928 2492990 . - . gene_id "RvY_04262"; transcript_id "RvY_04262.1"; Scaffold002 rebuild transcript 2493941 2498188 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; gene_name "dnaK"; annotation "Stress-70 protein, mitochondrial"; Pfam "[HSP70] Hsp70 protein|[MreB_Mbl] MreB/Mbl protein"; CDD "molecular chaperone DnaK; Provisional"; KO "K04043"; similar_genes "GRP75_RAT(e-value:9.5e-296;bit-score:1012.0)"; Scaffold002 rebuild exon 2493941 2493985 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2494089 2494144 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2494313 2494594 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2494673 2494797 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2494996 2495176 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2495302 2495464 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2495533 2495722 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2496026 2496138 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2496525 2496857 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2497262 2497379 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2497433 2497620 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2497699 2497839 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild exon 2498057 2498188 . + . gene_id "RvY_04263"; transcript_id "RvY_04263.1"; Scaffold002 rebuild transcript 2499982 2508200 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; gene_name "PDEase_I"; annotation "putative cGMP-specific 3',5'-cyclic phosphodiesterase"; Pfam "[GAF_3] GAF domain|[GAF_2] GAF domain|[GAF]|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.35"; KO "K13763"; similar_genes "PDE6_DROAN(e-value:9.3e-33;bit-score:138.0)"; Scaffold002 rebuild exon 2499982 2500594 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2501554 2501688 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2501787 2501920 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2503106 2503351 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2504651 2504794 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2504931 2505113 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2505410 2505595 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2505819 2505844 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2505971 2506088 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2506391 2506537 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2506618 2506801 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2507033 2507255 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2507340 2507553 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2507661 2507747 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2507906 2508062 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild exon 2508190 2508200 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.1"; Scaffold002 rebuild transcript 2499982 2508315 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; gene_name "PDEase_I"; annotation "putative cGMP-specific 3',5'-cyclic phosphodiesterase"; Pfam "[GAF_3] GAF domain|[GAF_2] GAF domain|[GAF]|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.35"; KO "K13763"; similar_genes "PDE6_DROAN(e-value:9.3e-33;bit-score:138.0)"; Scaffold002 rebuild exon 2499982 2500594 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2501554 2501688 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2501787 2501920 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2503106 2503351 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2504651 2504794 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2504931 2505113 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2505410 2505595 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2505819 2505844 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2505971 2506088 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2506391 2506537 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2506618 2506801 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2507033 2507255 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2507340 2507553 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2507661 2507747 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild exon 2508190 2508315 . + . gene_id "RvY_04264"; transcript_id "RvY_04264.2"; Scaffold002 rebuild transcript 2510132 2510716 . + . gene_id "RvY_04265"; transcript_id "RvY_04265.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2510132 2510193 . + . gene_id "RvY_04265"; transcript_id "RvY_04265.1"; Scaffold002 rebuild exon 2510560 2510716 . + . gene_id "RvY_04265"; transcript_id "RvY_04265.1"; Scaffold002 rebuild transcript 2511339 2513833 . + . gene_id "RvY_04266"; transcript_id "RvY_04266.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2511339 2511861 . + . gene_id "RvY_04266"; transcript_id "RvY_04266.1"; Scaffold002 rebuild exon 2512150 2513219 . + . gene_id "RvY_04266"; transcript_id "RvY_04266.1"; Scaffold002 rebuild exon 2513261 2513833 . + . gene_id "RvY_04266"; transcript_id "RvY_04266.1"; Scaffold002 rebuild transcript 2514604 2517946 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 2514604 2514687 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2515002 2515331 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2515381 2515698 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2515994 2516073 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2516348 2516521 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2516610 2516813 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2517061 2517230 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2517312 2517407 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2517474 2517595 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild exon 2517701 2517946 . - . gene_id "RvY_04267"; transcript_id "RvY_04267.1"; Scaffold002 rebuild transcript 2519917 2522322 . + . gene_id "RvY_04268"; transcript_id "RvY_04268.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2519917 2520603 . + . gene_id "RvY_04268"; transcript_id "RvY_04268.1"; Scaffold002 rebuild exon 2522230 2522322 . + . gene_id "RvY_04268"; transcript_id "RvY_04268.1"; Scaffold002 rebuild transcript 2523693 2524186 . - . gene_id "RvY_04269"; transcript_id "RvY_04269.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2523693 2523840 . - . gene_id "RvY_04269"; transcript_id "RvY_04269.1"; Scaffold002 rebuild exon 2524098 2524186 . - . gene_id "RvY_04269"; transcript_id "RvY_04269.1"; Scaffold002 rebuild transcript 2524333 2524512 . + . gene_id "RvY_04270"; transcript_id "RvY_04270.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2524333 2524512 . + . gene_id "RvY_04270"; transcript_id "RvY_04270.1"; Scaffold002 rebuild transcript 2528758 2528981 . + . gene_id "RvY_04271"; transcript_id "RvY_04271.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2528758 2528816 . + . gene_id "RvY_04271"; transcript_id "RvY_04271.1"; Scaffold002 rebuild exon 2528879 2528981 . + . gene_id "RvY_04271"; transcript_id "RvY_04271.1"; Scaffold002 rebuild transcript 2530008 2533673 . - . gene_id "RvY_04272"; transcript_id "RvY_04272.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2530008 2530175 . - . gene_id "RvY_04272"; transcript_id "RvY_04272.1"; Scaffold002 rebuild exon 2530431 2530513 . - . gene_id "RvY_04272"; transcript_id "RvY_04272.1"; Scaffold002 rebuild exon 2530584 2530882 . - . gene_id "RvY_04272"; transcript_id "RvY_04272.1"; Scaffold002 rebuild exon 2532148 2532211 . - . gene_id "RvY_04272"; transcript_id "RvY_04272.1"; Scaffold002 rebuild exon 2533310 2533673 . - . gene_id "RvY_04272"; transcript_id "RvY_04272.1"; Scaffold002 rebuild transcript 2537583 2538962 . - . gene_id "RvY_04273"; transcript_id "RvY_04273.1"; gene_name "PFN"; annotation "profilin"; Pfam "[Profilin]"; CDD "Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline."; KO "K05759"; similar_genes "PROF1_PHYPO(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 2537583 2537680 . - . gene_id "RvY_04273"; transcript_id "RvY_04273.1"; Scaffold002 rebuild exon 2538143 2538314 . - . gene_id "RvY_04273"; transcript_id "RvY_04273.1"; Scaffold002 rebuild exon 2538504 2538592 . - . gene_id "RvY_04273"; transcript_id "RvY_04273.1"; Scaffold002 rebuild exon 2538938 2538962 . - . gene_id "RvY_04273"; transcript_id "RvY_04273.1"; Scaffold002 rebuild transcript 2545517 2547857 . - . gene_id "RvY_04274"; transcript_id "RvY_04274.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2545517 2545816 . - . gene_id "RvY_04274"; transcript_id "RvY_04274.1"; Scaffold002 rebuild exon 2546311 2546427 . - . gene_id "RvY_04274"; transcript_id "RvY_04274.1"; Scaffold002 rebuild exon 2546973 2547195 . - . gene_id "RvY_04274"; transcript_id "RvY_04274.1"; Scaffold002 rebuild exon 2547772 2547857 . - . gene_id "RvY_04274"; transcript_id "RvY_04274.1"; Scaffold002 rebuild transcript 2549633 2549827 . - . gene_id "RvY_04275"; transcript_id "RvY_04275.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2549633 2549827 . - . gene_id "RvY_04275"; transcript_id "RvY_04275.1"; Scaffold002 rebuild transcript 2551592 2551912 . - . gene_id "RvY_04276"; transcript_id "RvY_04276.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2551592 2551912 . - . gene_id "RvY_04276"; transcript_id "RvY_04276.1"; Scaffold002 rebuild transcript 2558466 2558648 . + . gene_id "RvY_04277"; transcript_id "RvY_04277.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2558466 2558648 . + . gene_id "RvY_04277"; transcript_id "RvY_04277.1"; Scaffold002 rebuild transcript 2562567 2562872 . - . gene_id "RvY_04278"; transcript_id "RvY_04278.1"; gene_name "ATPase-IIB_Ca"; annotation "hypothetical protein."; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; Scaffold002 rebuild exon 2562567 2562872 . - . gene_id "RvY_04278"; transcript_id "RvY_04278.1"; Scaffold002 rebuild transcript 2565366 2566119 . - . gene_id "RvY_04279"; transcript_id "RvY_04279.1"; gene_name "ATPase-IIB_Ca"; annotation "hypothetical protein."; Pfam "[E1-E2_ATPase] E1-E2 ATPase"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; similar_genes "AT2B2_HUMAN(e-value:8.9e-10;bit-score:62.0)"; Scaffold002 rebuild exon 2565366 2565423 . - . gene_id "RvY_04279"; transcript_id "RvY_04279.1"; Scaffold002 rebuild exon 2565510 2565843 . - . gene_id "RvY_04279"; transcript_id "RvY_04279.1"; Scaffold002 rebuild exon 2566041 2566119 . - . gene_id "RvY_04279"; transcript_id "RvY_04279.1"; Scaffold002 rebuild transcript 2569234 2569383 . - . gene_id "RvY_04280"; transcript_id "RvY_04280.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2569234 2569383 . - . gene_id "RvY_04280"; transcript_id "RvY_04280.1"; Scaffold002 rebuild transcript 2570123 2572356 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2570123 2570295 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2570360 2570402 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2570479 2570631 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2570874 2570951 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2571081 2571119 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2571197 2571240 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2571303 2571613 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2571715 2571772 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild exon 2572038 2572356 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.1"; Scaffold002 rebuild transcript 2570123 2572091 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2570123 2570295 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2570360 2570402 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2570479 2570631 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2570874 2570951 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2571081 2571119 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2571197 2571240 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2571303 2571596 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2571715 2571772 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild exon 2572038 2572091 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.2"; Scaffold002 rebuild transcript 2571063 2572356 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.3"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 2571063 2571119 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.3"; Scaffold002 rebuild exon 2571197 2571240 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.3"; Scaffold002 rebuild exon 2571303 2571613 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.3"; Scaffold002 rebuild exon 2571715 2571772 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.3"; Scaffold002 rebuild exon 2572038 2572356 . - . gene_id "RvY_04281"; transcript_id "RvY_04281.3"; Scaffold002 rebuild transcript 2575252 2575890 . - . gene_id "RvY_04282"; transcript_id "RvY_04282.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2575252 2575424 . - . gene_id "RvY_04282"; transcript_id "RvY_04282.1"; Scaffold002 rebuild exon 2575797 2575890 . - . gene_id "RvY_04282"; transcript_id "RvY_04282.1"; Scaffold002 rebuild transcript 2578446 2578652 . + . gene_id "RvY_04283"; transcript_id "RvY_04283.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2578446 2578652 . + . gene_id "RvY_04283"; transcript_id "RvY_04283.1"; Scaffold002 rebuild transcript 2579432 2579650 . - . gene_id "RvY_04284"; transcript_id "RvY_04284.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2579432 2579562 . - . gene_id "RvY_04284"; transcript_id "RvY_04284.1"; Scaffold002 rebuild exon 2579620 2579650 . - . gene_id "RvY_04284"; transcript_id "RvY_04284.1"; Scaffold002 rebuild transcript 2580229 2580788 . + . gene_id "RvY_04285"; transcript_id "RvY_04285.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2580229 2580259 . + . gene_id "RvY_04285"; transcript_id "RvY_04285.1"; Scaffold002 rebuild exon 2580433 2580567 . + . gene_id "RvY_04285"; transcript_id "RvY_04285.1"; Scaffold002 rebuild exon 2580667 2580788 . + . gene_id "RvY_04285"; transcript_id "RvY_04285.1"; Scaffold002 rebuild transcript 2581558 2583460 . - . gene_id "RvY_04286"; transcript_id "RvY_04286.1"; annotation "putative T-cell leukemia homeobox protein 3"; Pfam "[Homeobox]"; KO "K15607"; similar_genes "TLX3_HUMAN(e-value:2.6e-41;bit-score:166.0)"; Scaffold002 rebuild exon 2581558 2581900 . - . gene_id "RvY_04286"; transcript_id "RvY_04286.1"; Scaffold002 rebuild exon 2582255 2582292 . - . gene_id "RvY_04286"; transcript_id "RvY_04286.1"; Scaffold002 rebuild exon 2582442 2582524 . - . gene_id "RvY_04286"; transcript_id "RvY_04286.1"; Scaffold002 rebuild exon 2582686 2582781 . - . gene_id "RvY_04286"; transcript_id "RvY_04286.1"; Scaffold002 rebuild exon 2583049 2583460 . - . gene_id "RvY_04286"; transcript_id "RvY_04286.1"; Scaffold002 rebuild transcript 2589089 2590536 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2589089 2589259 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.1"; Scaffold002 rebuild exon 2589417 2589592 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.1"; Scaffold002 rebuild exon 2589662 2590321 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.1"; Scaffold002 rebuild exon 2590470 2590536 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.1"; Scaffold002 rebuild transcript 2589204 2590536 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2589204 2589259 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.2"; Scaffold002 rebuild exon 2589419 2590321 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.2"; Scaffold002 rebuild exon 2590470 2590536 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.2"; Scaffold002 rebuild transcript 2588962 2590536 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2588962 2589116 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild exon 2589212 2589259 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild exon 2589419 2589592 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild exon 2589662 2589754 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild exon 2589815 2589904 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild exon 2589971 2590321 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild exon 2590470 2590536 . - . gene_id "RvY_04287"; transcript_id "RvY_04287.3"; Scaffold002 rebuild transcript 2591250 2592445 . + . gene_id "RvY_04288"; transcript_id "RvY_04288.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2591250 2591328 . + . gene_id "RvY_04288"; transcript_id "RvY_04288.1"; Scaffold002 rebuild exon 2591418 2592445 . + . gene_id "RvY_04288"; transcript_id "RvY_04288.1"; Scaffold002 rebuild transcript 2592605 2593677 . - . gene_id "RvY_04289"; transcript_id "RvY_04289.1"; annotation "hypothetical protein."; Pfam "[zf-HIT] HIT zinc finger"; Scaffold002 rebuild exon 2592605 2593029 . - . gene_id "RvY_04289"; transcript_id "RvY_04289.1"; Scaffold002 rebuild exon 2593173 2593677 . - . gene_id "RvY_04289"; transcript_id "RvY_04289.1"; Scaffold002 rebuild transcript 2594419 2598877 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; gene_name "ACSL"; annotation "putative Long-chain-fatty-acid--CoA ligase 1"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]"; EC "EC6.2.1.3"; KO "K01897"; similar_genes "ACSL1_HUMAN(e-value:6.1e-47;bit-score:185.0)"; Scaffold002 rebuild exon 2594419 2594421 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2594491 2594637 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2594704 2594812 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2595554 2595823 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2595894 2595949 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2596024 2596140 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2596261 2596419 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2596556 2596625 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2596951 2597324 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2597387 2597411 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2597727 2597980 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2598327 2598716 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild exon 2598803 2598877 . + . gene_id "RvY_04290"; transcript_id "RvY_04290.1"; Scaffold002 rebuild transcript 2600231 2600773 . + . gene_id "RvY_04291"; transcript_id "RvY_04291.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2600231 2600773 . + . gene_id "RvY_04291"; transcript_id "RvY_04291.1"; Scaffold002 rebuild transcript 2601692 2602732 . + . gene_id "RvY_04292"; transcript_id "RvY_04292.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2601692 2602732 . + . gene_id "RvY_04292"; transcript_id "RvY_04292.1"; Scaffold002 rebuild transcript 2603904 2604128 . - . gene_id "RvY_04293"; transcript_id "RvY_04293.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2603904 2604128 . - . gene_id "RvY_04293"; transcript_id "RvY_04293.1"; Scaffold002 rebuild transcript 2604198 2605197 . - . gene_id "RvY_04294"; transcript_id "RvY_04294.1"; gene_name "AbgB"; annotation "hypothetical protein."; CDD "Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]"; similar_genes "P20D2_HUMAN(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 2604198 2604494 . - . gene_id "RvY_04294"; transcript_id "RvY_04294.1"; Scaffold002 rebuild exon 2604580 2605197 . - . gene_id "RvY_04294"; transcript_id "RvY_04294.1"; Scaffold002 rebuild transcript 2607508 2610974 . - . gene_id "RvY_04295"; transcript_id "RvY_04295.1"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; KO "K15201"; Scaffold002 rebuild exon 2607508 2607969 . - . gene_id "RvY_04295"; transcript_id "RvY_04295.1"; Scaffold002 rebuild exon 2608178 2608462 . - . gene_id "RvY_04295"; transcript_id "RvY_04295.1"; Scaffold002 rebuild exon 2608953 2609616 . - . gene_id "RvY_04295"; transcript_id "RvY_04295.1"; Scaffold002 rebuild exon 2609760 2610226 . - . gene_id "RvY_04295"; transcript_id "RvY_04295.1"; Scaffold002 rebuild exon 2610423 2610974 . - . gene_id "RvY_04295"; transcript_id "RvY_04295.1"; Scaffold002 rebuild transcript 2611505 2612741 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; gene_name "YKT6"; annotation "putative Synaptobrevin homolog YKT6"; Pfam "[Longin] Regulated-SNARE-like domain|[Synaptobrevin]"; CDD "Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]"; EC "EC2.3.1.-"; KO "K08516"; similar_genes "YKT6_DANRE(e-value:1.2e-30;bit-score:131.0)"; Scaffold002 rebuild exon 2611505 2611605 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2611664 2611746 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2611913 2612013 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2612082 2612140 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2612256 2612301 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2612370 2612435 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2612500 2612601 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild exon 2612706 2612741 . + . gene_id "RvY_04296"; transcript_id "RvY_04296.1"; Scaffold002 rebuild transcript 2613714 2613878 . - . gene_id "RvY_04297"; transcript_id "RvY_04297.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2613714 2613878 . - . gene_id "RvY_04297"; transcript_id "RvY_04297.1"; Scaffold002 rebuild transcript 2613976 2615816 . + . gene_id "RvY_04298"; transcript_id "RvY_04298.1"; gene_name "udk"; annotation "putative Uridine-cytidine kinase 2-A"; Pfam "[PRK] Phosphoribulokinase / Uridine kinase family"; CDD "Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine."; EC "EC2.7.1.48"; KO "K00876"; similar_genes "UCK2A_DANRE(e-value:1.3e-38;bit-score:157.0)"; Scaffold002 rebuild exon 2613976 2614215 . + . gene_id "RvY_04298"; transcript_id "RvY_04298.1"; Scaffold002 rebuild exon 2614876 2615035 . + . gene_id "RvY_04298"; transcript_id "RvY_04298.1"; Scaffold002 rebuild exon 2615095 2615337 . + . gene_id "RvY_04298"; transcript_id "RvY_04298.1"; Scaffold002 rebuild exon 2615449 2615816 . + . gene_id "RvY_04298"; transcript_id "RvY_04298.1"; Scaffold002 rebuild transcript 2616705 2617758 . + . gene_id "RvY_04299"; transcript_id "RvY_04299.1"; gene_name "VPS24"; annotation "charged multivesicular body protein 3"; Pfam "[Snf7]"; KO "K12193"; similar_genes "CHMP3_DANRE(e-value:1.9e-16;bit-score:84.0)"; Scaffold002 rebuild exon 2616705 2616807 . + . gene_id "RvY_04299"; transcript_id "RvY_04299.1"; Scaffold002 rebuild exon 2616876 2617055 . + . gene_id "RvY_04299"; transcript_id "RvY_04299.1"; Scaffold002 rebuild exon 2617136 2617257 . + . gene_id "RvY_04299"; transcript_id "RvY_04299.1"; Scaffold002 rebuild exon 2617462 2617758 . + . gene_id "RvY_04299"; transcript_id "RvY_04299.1"; Scaffold002 rebuild transcript 2617980 2618324 . - . gene_id "RvY_04300"; transcript_id "RvY_04300.1"; gene_name "K01112"; annotation "hypothetical protein."; Pfam "[Ocnus] Janus/Ocnus family (Ocnus)"; KO "K01112"; Scaffold002 rebuild exon 2617980 2618324 . - . gene_id "RvY_04300"; transcript_id "RvY_04300.1"; Scaffold002 rebuild transcript 2618962 2622676 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; gene_name "STT3"; annotation "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B"; Pfam "[STT3] Oligosaccharyl transferase STT3 subunit"; EC "EC2.4.1.119"; KO "K07151"; similar_genes "STT3B_MOUSE(e-value:4.4e-128;bit-score:455.0)"; Scaffold002 rebuild exon 2618962 2619366 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild exon 2619549 2619836 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild exon 2620010 2620519 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild exon 2620662 2620862 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild exon 2621155 2621430 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild exon 2621699 2622014 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild exon 2622228 2622676 . + . gene_id "RvY_04301"; transcript_id "RvY_04301.1"; Scaffold002 rebuild transcript 2623269 2623684 . - . gene_id "RvY_04302"; transcript_id "RvY_04302.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2623269 2623413 . - . gene_id "RvY_04302"; transcript_id "RvY_04302.1"; Scaffold002 rebuild exon 2623623 2623684 . - . gene_id "RvY_04302"; transcript_id "RvY_04302.1"; Scaffold002 rebuild transcript 2625570 2627324 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; gene_name "PRSS21"; annotation "protease, serine, 21 (testisin) [EC:3.4.21.-]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 2625570 2625645 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; Scaffold002 rebuild exon 2625737 2626024 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; Scaffold002 rebuild exon 2626280 2626451 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; Scaffold002 rebuild exon 2626519 2626954 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; Scaffold002 rebuild exon 2627027 2627117 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; Scaffold002 rebuild exon 2627251 2627324 . + . gene_id "RvY_04303"; transcript_id "RvY_04303.1"; Scaffold002 rebuild transcript 2630694 2630870 . + . gene_id "RvY_04304"; transcript_id "RvY_04304.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2630694 2630870 . + . gene_id "RvY_04304"; transcript_id "RvY_04304.1"; Scaffold002 rebuild transcript 2633126 2634736 . - . gene_id "RvY_04305"; transcript_id "RvY_04305.1"; gene_name "FMO-like"; annotation "hypothetical protein."; Pfam "[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[FMO-like] Flavin-binding monooxygenase-like|[K_oxygenase] L-lysine 6-monooxygenase (NADPH-requiring)|[NAD_binding_9] FAD-NAD(P)-binding"; CDD "Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase."; EC "EC1.14.13.8"; similar_genes "FMO1_RAT(e-value:3.9e-06;bit-score:49.0)"; Scaffold002 rebuild exon 2633126 2633987 . - . gene_id "RvY_04305"; transcript_id "RvY_04305.1"; Scaffold002 rebuild exon 2634077 2634210 . - . gene_id "RvY_04305"; transcript_id "RvY_04305.1"; Scaffold002 rebuild exon 2634284 2634422 . - . gene_id "RvY_04305"; transcript_id "RvY_04305.1"; Scaffold002 rebuild exon 2634513 2634736 . - . gene_id "RvY_04305"; transcript_id "RvY_04305.1"; Scaffold002 rebuild transcript 2635611 2635733 . - . gene_id "RvY_04306"; transcript_id "RvY_04306.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2635611 2635733 . - . gene_id "RvY_04306"; transcript_id "RvY_04306.1"; Scaffold002 rebuild transcript 2638429 2639646 . - . gene_id "RvY_04307"; transcript_id "RvY_04307.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "OPS5_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold002 rebuild exon 2638429 2638571 . - . gene_id "RvY_04307"; transcript_id "RvY_04307.1"; Scaffold002 rebuild exon 2638857 2639091 . - . gene_id "RvY_04307"; transcript_id "RvY_04307.1"; Scaffold002 rebuild exon 2639311 2639646 . - . gene_id "RvY_04307"; transcript_id "RvY_04307.1"; Scaffold002 rebuild transcript 2639658 2639888 . - . gene_id "RvY_04308"; transcript_id "RvY_04308.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2639658 2639888 . - . gene_id "RvY_04308"; transcript_id "RvY_04308.1"; Scaffold002 rebuild transcript 2641041 2642423 . - . gene_id "RvY_04309"; transcript_id "RvY_04309.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2641041 2641079 . - . gene_id "RvY_04309"; transcript_id "RvY_04309.1"; Scaffold002 rebuild exon 2642289 2642423 . - . gene_id "RvY_04309"; transcript_id "RvY_04309.1"; Scaffold002 rebuild transcript 2646073 2648343 . - . gene_id "RvY_04310"; transcript_id "RvY_04310.1"; gene_name "MARS"; annotation "putative Methionyl-tRNA synthetase, mitochondrial"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[Anticodon_1] Anticodon-binding domain of tRNA|[tRNA-synt_1e] tRNA synthetases class I (C) catalytic domain|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)"; CDD "methionyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.10"; KO "K01874"; similar_genes "SYMM_HUMAN(e-value:4.4e-39;bit-score:159.0)"; Scaffold002 rebuild exon 2646073 2646671 . - . gene_id "RvY_04310"; transcript_id "RvY_04310.1"; Scaffold002 rebuild exon 2646867 2647078 . - . gene_id "RvY_04310"; transcript_id "RvY_04310.1"; Scaffold002 rebuild exon 2647171 2647300 . - . gene_id "RvY_04310"; transcript_id "RvY_04310.1"; Scaffold002 rebuild exon 2647502 2648131 . - . gene_id "RvY_04310"; transcript_id "RvY_04310.1"; Scaffold002 rebuild exon 2648292 2648343 . - . gene_id "RvY_04310"; transcript_id "RvY_04310.1"; Scaffold002 rebuild transcript 2648747 2650239 . + . gene_id "RvY_04311"; transcript_id "RvY_04311.1"; annotation "hypothetical protein."; Pfam "[Malectin] Di-glucose binding within endoplasmic reticulum"; Scaffold002 rebuild exon 2648747 2648967 . + . gene_id "RvY_04311"; transcript_id "RvY_04311.1"; Scaffold002 rebuild exon 2649222 2649399 . + . gene_id "RvY_04311"; transcript_id "RvY_04311.1"; Scaffold002 rebuild exon 2649473 2649700 . + . gene_id "RvY_04311"; transcript_id "RvY_04311.1"; Scaffold002 rebuild exon 2649759 2649816 . + . gene_id "RvY_04311"; transcript_id "RvY_04311.1"; Scaffold002 rebuild exon 2649995 2650239 . + . gene_id "RvY_04311"; transcript_id "RvY_04311.1"; Scaffold002 rebuild transcript 2653151 2654333 . + . gene_id "RvY_04312"; transcript_id "RvY_04312.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2653151 2653223 . + . gene_id "RvY_04312"; transcript_id "RvY_04312.1"; Scaffold002 rebuild exon 2653657 2653908 . + . gene_id "RvY_04312"; transcript_id "RvY_04312.1"; Scaffold002 rebuild exon 2654059 2654333 . + . gene_id "RvY_04312"; transcript_id "RvY_04312.1"; Scaffold002 rebuild transcript 2654833 2655153 . + . gene_id "RvY_04313"; transcript_id "RvY_04313.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2654833 2655153 . + . gene_id "RvY_04313"; transcript_id "RvY_04313.1"; Scaffold002 rebuild transcript 2655277 2656369 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.1"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; Scaffold002 rebuild exon 2655277 2655434 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.1"; Scaffold002 rebuild exon 2655562 2655744 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.1"; Scaffold002 rebuild exon 2655821 2656054 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.1"; Scaffold002 rebuild exon 2656179 2656236 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.1"; Scaffold002 rebuild exon 2656298 2656369 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.1"; Scaffold002 rebuild transcript 2655277 2656333 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.2"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; Scaffold002 rebuild exon 2655277 2655434 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.2"; Scaffold002 rebuild exon 2655562 2655744 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.2"; Scaffold002 rebuild exon 2655821 2656054 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.2"; Scaffold002 rebuild exon 2656179 2656236 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.2"; Scaffold002 rebuild exon 2656298 2656333 . - . gene_id "RvY_04314"; transcript_id "RvY_04314.2"; Scaffold002 rebuild transcript 2658778 2661361 . - . gene_id "RvY_04315"; transcript_id "RvY_04315.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold002 rebuild exon 2658778 2659580 . - . gene_id "RvY_04315"; transcript_id "RvY_04315.1"; Scaffold002 rebuild exon 2660800 2661361 . - . gene_id "RvY_04315"; transcript_id "RvY_04315.1"; Scaffold002 rebuild transcript 2668762 2670234 . - . gene_id "RvY_04316"; transcript_id "RvY_04316.1"; gene_name "RAB3A"; annotation "Ras-related protein Rab-3"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07882"; similar_genes "RAB3_DROME(e-value:8.1e-102;bit-score:367.0)"; Scaffold002 rebuild exon 2668762 2669110 . - . gene_id "RvY_04316"; transcript_id "RvY_04316.1"; Scaffold002 rebuild exon 2669480 2669598 . - . gene_id "RvY_04316"; transcript_id "RvY_04316.1"; Scaffold002 rebuild exon 2670013 2670234 . - . gene_id "RvY_04316"; transcript_id "RvY_04316.1"; Scaffold002 rebuild transcript 2672633 2675386 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; annotation "hypothetical protein."; similar_genes "SSBP3_CHICK(e-value:4.0e-12;bit-score:69.0)"; Scaffold002 rebuild exon 2672633 2672691 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2672775 2672847 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2672938 2673005 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2673096 2673180 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2673254 2673331 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2673402 2673720 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2673835 2674096 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2674234 2674342 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2674427 2674466 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2674598 2674726 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild exon 2675217 2675386 . + . gene_id "RvY_04317"; transcript_id "RvY_04317.1"; Scaffold002 rebuild transcript 2676104 2678518 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; gene_name "PARL"; annotation "rhomboid-like protein [EC:3.4.21.105]"; Pfam "[Rhomboid] Rhomboid family"; EC "EC3.4.21.105"; KO "K09650"; similar_genes "PARL_DANRE(e-value:1.2e-13;bit-score:74.0)"; Scaffold002 rebuild exon 2676104 2676197 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; Scaffold002 rebuild exon 2676282 2676552 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; Scaffold002 rebuild exon 2677680 2677974 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; Scaffold002 rebuild exon 2678039 2678161 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; Scaffold002 rebuild exon 2678225 2678345 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; Scaffold002 rebuild exon 2678457 2678518 . - . gene_id "RvY_04318"; transcript_id "RvY_04318.1"; Scaffold002 rebuild transcript 2676879 2678786 . + . gene_id "RvY_04319"; transcript_id "RvY_04319.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2676879 2676941 . + . gene_id "RvY_04319"; transcript_id "RvY_04319.1"; Scaffold002 rebuild exon 2678463 2678786 . + . gene_id "RvY_04319"; transcript_id "RvY_04319.1"; Scaffold002 rebuild transcript 2678925 2679398 . + . gene_id "RvY_04320"; transcript_id "RvY_04320.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2678925 2678984 . + . gene_id "RvY_04320"; transcript_id "RvY_04320.1"; Scaffold002 rebuild exon 2679135 2679398 . + . gene_id "RvY_04320"; transcript_id "RvY_04320.1"; Scaffold002 rebuild transcript 2681028 2682336 . + . gene_id "RvY_04321"; transcript_id "RvY_04321.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2681028 2681389 . + . gene_id "RvY_04321"; transcript_id "RvY_04321.1"; Scaffold002 rebuild exon 2681581 2681654 . + . gene_id "RvY_04321"; transcript_id "RvY_04321.1"; Scaffold002 rebuild exon 2681814 2681943 . + . gene_id "RvY_04321"; transcript_id "RvY_04321.1"; Scaffold002 rebuild exon 2682012 2682336 . + . gene_id "RvY_04321"; transcript_id "RvY_04321.1"; Scaffold002 rebuild transcript 2684377 2685432 . - . gene_id "RvY_04322"; transcript_id "RvY_04322.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 2684377 2685432 . - . gene_id "RvY_04322"; transcript_id "RvY_04322.1"; Scaffold002 rebuild transcript 2688031 2688639 . - . gene_id "RvY_04323"; transcript_id "RvY_04323.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 2688031 2688639 . - . gene_id "RvY_04323"; transcript_id "RvY_04323.1"; Scaffold002 rebuild transcript 2689251 2689844 . - . gene_id "RvY_04324"; transcript_id "RvY_04324.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2689251 2689387 . - . gene_id "RvY_04324"; transcript_id "RvY_04324.1"; Scaffold002 rebuild exon 2689393 2689659 . - . gene_id "RvY_04324"; transcript_id "RvY_04324.1"; Scaffold002 rebuild exon 2689727 2689844 . - . gene_id "RvY_04324"; transcript_id "RvY_04324.1"; Scaffold002 rebuild transcript 2689862 2692212 . + . gene_id "RvY_04325"; transcript_id "RvY_04325.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 2689862 2689883 . + . gene_id "RvY_04325"; transcript_id "RvY_04325.1"; Scaffold002 rebuild exon 2690171 2692212 . + . gene_id "RvY_04325"; transcript_id "RvY_04325.1"; Scaffold002 rebuild transcript 2693086 2693376 . + . gene_id "RvY_04326"; transcript_id "RvY_04326.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2693086 2693376 . + . gene_id "RvY_04326"; transcript_id "RvY_04326.1"; Scaffold002 rebuild transcript 2693824 2694582 . + . gene_id "RvY_04327"; transcript_id "RvY_04327.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "glutathione s-transferase; Provisional"; EC "EC2.5.1.18"; KO "K00799"; similar_genes "GST1_ASCSU(e-value:1.6e-11;bit-score:67.0)"; Scaffold002 rebuild exon 2693824 2694075 . + . gene_id "RvY_04327"; transcript_id "RvY_04327.1"; Scaffold002 rebuild exon 2694135 2694183 . + . gene_id "RvY_04327"; transcript_id "RvY_04327.1"; Scaffold002 rebuild exon 2694257 2694582 . + . gene_id "RvY_04327"; transcript_id "RvY_04327.1"; Scaffold002 rebuild transcript 2695510 2695755 . - . gene_id "RvY_04328"; transcript_id "RvY_04328.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2695510 2695755 . - . gene_id "RvY_04328"; transcript_id "RvY_04328.1"; Scaffold002 rebuild transcript 2696261 2696452 . + . gene_id "RvY_04329"; transcript_id "RvY_04329.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2696261 2696452 . + . gene_id "RvY_04329"; transcript_id "RvY_04329.1"; Scaffold002 rebuild transcript 2701122 2701793 . - . gene_id "RvY_04330"; transcript_id "RvY_04330.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold002 rebuild exon 2701122 2701534 . - . gene_id "RvY_04330"; transcript_id "RvY_04330.1"; Scaffold002 rebuild exon 2701658 2701793 . - . gene_id "RvY_04330"; transcript_id "RvY_04330.1"; Scaffold002 rebuild transcript 2701906 2702157 . + . gene_id "RvY_04331"; transcript_id "RvY_04331.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2701906 2702157 . + . gene_id "RvY_04331"; transcript_id "RvY_04331.1"; Scaffold002 rebuild transcript 2702282 2702650 . - . gene_id "RvY_04332"; transcript_id "RvY_04332.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2702282 2702650 . - . gene_id "RvY_04332"; transcript_id "RvY_04332.1"; Scaffold002 rebuild transcript 2709802 2710008 . + . gene_id "RvY_04333"; transcript_id "RvY_04333.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2709802 2710008 . + . gene_id "RvY_04333"; transcript_id "RvY_04333.1"; Scaffold002 rebuild transcript 2710266 2710604 . + . gene_id "RvY_04334"; transcript_id "RvY_04334.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2710266 2710604 . + . gene_id "RvY_04334"; transcript_id "RvY_04334.1"; Scaffold002 rebuild transcript 2713449 2717457 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; gene_name "(1)ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 2713449 2714410 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2714490 2714720 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2714794 2715020 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2715090 2715225 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2715309 2715431 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2715701 2715949 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2716045 2716275 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2716687 2716919 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2716985 2717243 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild exon 2717376 2717457 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.1"; Scaffold002 rebuild transcript 2712033 2717457 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; gene_name "(1)ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 2712033 2712086 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2712150 2712394 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2712475 2712619 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2712692 2712891 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2712972 2713124 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2715701 2715949 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2716045 2716275 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2716687 2716919 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2716985 2717243 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild exon 2717376 2717457 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.2"; Scaffold002 rebuild transcript 2712395 2717457 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; gene_name "(1)ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "(1)Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 2712395 2712619 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2712692 2712891 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2712972 2713124 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2715701 2715949 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2716045 2716275 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2716687 2716919 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2716985 2717243 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild exon 2717376 2717457 . - . gene_id "RvY_04335"; transcript_id "RvY_04335.3"; Scaffold002 rebuild transcript 2717815 2724723 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 2717815 2718758 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2719111 2721480 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2721566 2721888 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2721952 2722095 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2722189 2722330 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2722412 2722806 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2722933 2723452 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2723617 2723847 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2723937 2724014 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2724083 2724231 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2724291 2724426 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2724489 2724605 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild exon 2724669 2724723 . - . gene_id "RvY_04336"; transcript_id "RvY_04336.1"; Scaffold002 rebuild transcript 2725498 2726721 . + . gene_id "RvY_04337"; transcript_id "RvY_04337.1"; gene_name "FReD"; annotation "hypothetical protein."; Pfam "[Fibrinogen_C] Fibrinogen beta and gamma chains, C-terminal globular domain"; CDD "Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular arrangement called the disulfide knot. The C termini of fibrinogen chains end in globular domains, which are not completely equivalent. C terminal globular domains of the gamma chains (C-gamma) dimerize and bind to the GPR motif of the N-terminal domain of the alpha chain, while the GHR motif of N-terminal domain of the beta chain binds to the C terminal globular domains of another beta chain (C-beta), which leads to lattice formation."; Scaffold002 rebuild exon 2725498 2725702 . + . gene_id "RvY_04337"; transcript_id "RvY_04337.1"; Scaffold002 rebuild exon 2725804 2725877 . + . gene_id "RvY_04337"; transcript_id "RvY_04337.1"; Scaffold002 rebuild exon 2725970 2726138 . + . gene_id "RvY_04337"; transcript_id "RvY_04337.1"; Scaffold002 rebuild exon 2726336 2726721 . + . gene_id "RvY_04337"; transcript_id "RvY_04337.1"; Scaffold002 rebuild transcript 2726935 2727679 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.1"; annotation "hypothetical protein."; Pfam "[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold002 rebuild exon 2726935 2727132 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.1"; Scaffold002 rebuild exon 2727195 2727271 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.1"; Scaffold002 rebuild exon 2727371 2727524 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.1"; Scaffold002 rebuild exon 2727611 2727679 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.1"; Scaffold002 rebuild transcript 2726895 2727376 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.2"; annotation "hypothetical protein."; Pfam "[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold002 rebuild exon 2726895 2727132 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.2"; Scaffold002 rebuild exon 2727195 2727271 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.2"; Scaffold002 rebuild exon 2727371 2727376 . - . gene_id "RvY_04338"; transcript_id "RvY_04338.2"; Scaffold002 rebuild transcript 2728933 2730269 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.1"; gene_name "(1)TIAL1"; annotation "(1)nucleolysin TIAR(2)hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1)polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "(1)K13201"; Scaffold002 rebuild exon 2728933 2728975 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.1"; Scaffold002 rebuild exon 2729109 2729214 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.1"; Scaffold002 rebuild exon 2729302 2729555 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.1"; Scaffold002 rebuild exon 2729636 2729838 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.1"; Scaffold002 rebuild exon 2730081 2730269 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.1"; Scaffold002 rebuild transcript 2728933 2729484 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.2"; gene_name "(1)TIAL1"; annotation "(1)nucleolysin TIAR(2)hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1)polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "(1)K13201"; Scaffold002 rebuild exon 2728933 2729214 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.2"; Scaffold002 rebuild exon 2729302 2729484 . + . gene_id "RvY_04339"; transcript_id "RvY_04339.2"; Scaffold002 rebuild transcript 2730455 2732273 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; gene_name "PSMC6"; annotation "26S protease regulatory subunit S10B"; Pfam "[AAA_16] AAA ATPase domain|[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]"; KO "K03064"; similar_genes "PRS10_HUMAN(e-value:4.9e-193;bit-score:670.0)"; Scaffold002 rebuild exon 2730455 2730645 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild exon 2730732 2730812 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild exon 2730875 2730995 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild exon 2731071 2731256 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild exon 2731324 2731473 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild exon 2731750 2732105 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild exon 2732186 2732273 . - . gene_id "RvY_04340"; transcript_id "RvY_04340.1"; Scaffold002 rebuild transcript 2732720 2737568 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; gene_name "RTEL1"; annotation "regulator of telomere elongation helicase 1"; Pfam "[DEAD_2]|[DEAD] DEAD/DEAH box helicase|[Helicase_C_2] Helicase C-terminal domain"; CDD "DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "K11136"; similar_genes "RTEL1_ANOGA(e-value:8.5e-21;bit-score:98.0)"; Scaffold002 rebuild exon 2732720 2733202 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; Scaffold002 rebuild exon 2733642 2733883 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; Scaffold002 rebuild exon 2734146 2734568 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; Scaffold002 rebuild exon 2734833 2735195 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; Scaffold002 rebuild exon 2735558 2736687 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; Scaffold002 rebuild exon 2737195 2737568 . - . gene_id "RvY_04341"; transcript_id "RvY_04341.1"; Scaffold002 rebuild transcript 2741825 2742388 . + . gene_id "RvY_04342"; transcript_id "RvY_04342.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2741825 2741870 . + . gene_id "RvY_04342"; transcript_id "RvY_04342.1"; Scaffold002 rebuild exon 2742052 2742179 . + . gene_id "RvY_04342"; transcript_id "RvY_04342.1"; Scaffold002 rebuild exon 2742242 2742388 . + . gene_id "RvY_04342"; transcript_id "RvY_04342.1"; Scaffold002 rebuild transcript 2742491 2743092 . + . gene_id "RvY_04343"; transcript_id "RvY_04343.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2742491 2742505 . + . gene_id "RvY_04343"; transcript_id "RvY_04343.1"; Scaffold002 rebuild exon 2742907 2743092 . + . gene_id "RvY_04343"; transcript_id "RvY_04343.1"; Scaffold002 rebuild transcript 2743105 2743386 . + . gene_id "RvY_04344"; transcript_id "RvY_04344.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2743105 2743386 . + . gene_id "RvY_04344"; transcript_id "RvY_04344.1"; Scaffold002 rebuild transcript 2748416 2750652 . - . gene_id "RvY_04345"; transcript_id "RvY_04345.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2748416 2748547 . - . gene_id "RvY_04345"; transcript_id "RvY_04345.1"; Scaffold002 rebuild exon 2750512 2750652 . - . gene_id "RvY_04345"; transcript_id "RvY_04345.1"; Scaffold002 rebuild transcript 2755468 2756644 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1,2,3)OPSD1_PATYE(e-value:1.5e-09;bit-score:61.0)(4)OPS5_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold002 rebuild exon 2755468 2755573 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.1"; Scaffold002 rebuild exon 2755642 2756145 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.1"; Scaffold002 rebuild exon 2756238 2756644 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.1"; Scaffold002 rebuild transcript 2755468 2756563 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1,2,3)OPSD1_PATYE(e-value:1.5e-09;bit-score:61.0)(4)OPS5_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold002 rebuild exon 2755468 2755573 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.2"; Scaffold002 rebuild exon 2755642 2756145 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.2"; Scaffold002 rebuild exon 2756238 2756563 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.2"; Scaffold002 rebuild transcript 2755468 2756548 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1,2,3)OPSD1_PATYE(e-value:1.5e-09;bit-score:61.0)(4)OPS5_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold002 rebuild exon 2755468 2755573 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.3"; Scaffold002 rebuild exon 2755642 2756145 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.3"; Scaffold002 rebuild exon 2756238 2756548 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.3"; Scaffold002 rebuild transcript 2755698 2756569 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.4"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1,2,3)OPSD1_PATYE(e-value:1.5e-09;bit-score:61.0)(4)OPS5_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold002 rebuild exon 2755698 2756145 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.4"; Scaffold002 rebuild exon 2756238 2756569 . + . gene_id "RvY_04346"; transcript_id "RvY_04346.4"; Scaffold002 rebuild transcript 2758605 2762403 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2758605 2758794 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2759086 2759760 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2760205 2761112 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2761182 2761274 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2761343 2761646 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2761712 2761776 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2761834 2762103 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild exon 2762182 2762403 . + . gene_id "RvY_04347"; transcript_id "RvY_04347.1"; Scaffold002 rebuild transcript 2762807 2763444 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2762807 2762903 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.1"; Scaffold002 rebuild exon 2762977 2763052 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.1"; Scaffold002 rebuild exon 2763126 2763264 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.1"; Scaffold002 rebuild exon 2763334 2763444 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.1"; Scaffold002 rebuild transcript 2762973 2763444 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2762973 2763052 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.2"; Scaffold002 rebuild exon 2763126 2763264 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.2"; Scaffold002 rebuild exon 2763334 2763444 . - . gene_id "RvY_04348"; transcript_id "RvY_04348.2"; Scaffold002 rebuild transcript 2763946 2764431 . - . gene_id "RvY_04349"; transcript_id "RvY_04349.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2763946 2764025 . - . gene_id "RvY_04349"; transcript_id "RvY_04349.1"; Scaffold002 rebuild exon 2764200 2764431 . - . gene_id "RvY_04349"; transcript_id "RvY_04349.1"; Scaffold002 rebuild transcript 2765374 2765655 . - . gene_id "RvY_04350"; transcript_id "RvY_04350.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2765374 2765655 . - . gene_id "RvY_04350"; transcript_id "RvY_04350.1"; Scaffold002 rebuild transcript 2767604 2768601 . + . gene_id "RvY_04351"; transcript_id "RvY_04351.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2767604 2768098 . + . gene_id "RvY_04351"; transcript_id "RvY_04351.1"; Scaffold002 rebuild exon 2768172 2768402 . + . gene_id "RvY_04351"; transcript_id "RvY_04351.1"; Scaffold002 rebuild exon 2768488 2768601 . + . gene_id "RvY_04351"; transcript_id "RvY_04351.1"; Scaffold002 rebuild transcript 2772277 2773735 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; gene_name "PBP1_iGluR_N_LIVBP_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. On the other hand, non-NMDA receptors have faster kinetics, are weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute to several forms of synaptic plasticity and are suggested to play an important role in the development of synaptic pathways."; Scaffold002 rebuild exon 2772277 2772329 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild exon 2772439 2772619 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild exon 2772680 2772723 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild exon 2772793 2773103 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild exon 2773162 2773186 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild exon 2773272 2773313 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild exon 2773387 2773735 . - . gene_id "RvY_04352"; transcript_id "RvY_04352.1"; Scaffold002 rebuild transcript 2776704 2778220 . + . gene_id "RvY_04353"; transcript_id "RvY_04353.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold002 rebuild exon 2776704 2777741 . + . gene_id "RvY_04353"; transcript_id "RvY_04353.1"; Scaffold002 rebuild exon 2777825 2778031 . + . gene_id "RvY_04353"; transcript_id "RvY_04353.1"; Scaffold002 rebuild exon 2778119 2778220 . + . gene_id "RvY_04353"; transcript_id "RvY_04353.1"; Scaffold002 rebuild transcript 2780393 2780728 . + . gene_id "RvY_04354"; transcript_id "RvY_04354.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2780393 2780728 . + . gene_id "RvY_04354"; transcript_id "RvY_04354.1"; Scaffold002 rebuild transcript 2783203 2783709 . - . gene_id "RvY_04355"; transcript_id "RvY_04355.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2783203 2783709 . - . gene_id "RvY_04355"; transcript_id "RvY_04355.1"; Scaffold002 rebuild transcript 2787157 2787513 . - . gene_id "RvY_04356"; transcript_id "RvY_04356.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2787157 2787513 . - . gene_id "RvY_04356"; transcript_id "RvY_04356.1"; Scaffold002 rebuild transcript 2787536 2787919 . - . gene_id "RvY_04357"; transcript_id "RvY_04357.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2787536 2787561 . - . gene_id "RvY_04357"; transcript_id "RvY_04357.1"; Scaffold002 rebuild exon 2787742 2787919 . - . gene_id "RvY_04357"; transcript_id "RvY_04357.1"; Scaffold002 rebuild transcript 2788156 2789009 . - . gene_id "RvY_04358"; transcript_id "RvY_04358.1"; gene_name "PIN1"; annotation "peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]"; Pfam "[WW]|[Rotamase_3] PPIC-type PPIASE domain|[Rotamase] PPIC-type PPIASE domain"; EC "EC5.2.1.8"; KO "K09578"; similar_genes "DOD_DROME(e-value:1.1e-24;bit-score:111.0)"; Scaffold002 rebuild exon 2788156 2788376 . - . gene_id "RvY_04358"; transcript_id "RvY_04358.1"; Scaffold002 rebuild exon 2788625 2788831 . - . gene_id "RvY_04358"; transcript_id "RvY_04358.1"; Scaffold002 rebuild exon 2788958 2789009 . - . gene_id "RvY_04358"; transcript_id "RvY_04358.1"; Scaffold002 rebuild transcript 2789031 2789318 . + . gene_id "RvY_04359"; transcript_id "RvY_04359.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2789031 2789318 . + . gene_id "RvY_04359"; transcript_id "RvY_04359.1"; Scaffold002 rebuild transcript 2790011 2790775 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 2790011 2790775 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.1"; Scaffold002 rebuild transcript 2789654 2790264 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.2"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 2789654 2789825 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.2"; Scaffold002 rebuild exon 2789888 2790264 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.2"; Scaffold002 rebuild transcript 2789842 2790264 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.3"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 2789842 2790264 . - . gene_id "RvY_04360"; transcript_id "RvY_04360.3"; Scaffold002 rebuild transcript 2791222 2791800 . - . gene_id "RvY_04361"; transcript_id "RvY_04361.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2791222 2791601 . - . gene_id "RvY_04361"; transcript_id "RvY_04361.1"; Scaffold002 rebuild exon 2791746 2791800 . - . gene_id "RvY_04361"; transcript_id "RvY_04361.1"; Scaffold002 rebuild transcript 2791944 2792168 . - . gene_id "RvY_04362"; transcript_id "RvY_04362.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2791944 2792168 . - . gene_id "RvY_04362"; transcript_id "RvY_04362.1"; Scaffold002 rebuild transcript 2792186 2792512 . - . gene_id "RvY_04363"; transcript_id "RvY_04363.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2792186 2792512 . - . gene_id "RvY_04363"; transcript_id "RvY_04363.1"; Scaffold002 rebuild transcript 2793798 2794193 . + . gene_id "RvY_04364"; transcript_id "RvY_04364.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2793798 2794193 . + . gene_id "RvY_04364"; transcript_id "RvY_04364.1"; Scaffold002 rebuild transcript 2794326 2796138 . - . gene_id "RvY_04365"; transcript_id "RvY_04365.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold002 rebuild exon 2794326 2794954 . - . gene_id "RvY_04365"; transcript_id "RvY_04365.1"; Scaffold002 rebuild exon 2795446 2795777 . - . gene_id "RvY_04365"; transcript_id "RvY_04365.1"; Scaffold002 rebuild exon 2795798 2796138 . - . gene_id "RvY_04365"; transcript_id "RvY_04365.1"; Scaffold002 rebuild transcript 2794955 2795812 . - . gene_id "RvY_04365"; transcript_id "RvY_04365.2"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold002 rebuild exon 2794955 2795812 . - . gene_id "RvY_04365"; transcript_id "RvY_04365.2"; Scaffold002 rebuild transcript 2801331 2803066 . + . gene_id "RvY_04366"; transcript_id "RvY_04366.1"; gene_name "PRCC"; annotation "proline-rich protein PRCC"; Pfam "[PRCC_Cterm] Mitotic checkpoint protein PRCC_Cterm"; KO "K13105"; Scaffold002 rebuild exon 2801331 2801762 . + . gene_id "RvY_04366"; transcript_id "RvY_04366.1"; Scaffold002 rebuild exon 2801850 2802354 . + . gene_id "RvY_04366"; transcript_id "RvY_04366.1"; Scaffold002 rebuild exon 2802690 2803066 . + . gene_id "RvY_04366"; transcript_id "RvY_04366.1"; Scaffold002 rebuild transcript 2804783 2806532 . + . gene_id "RvY_04367"; transcript_id "RvY_04367.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2804783 2805261 . + . gene_id "RvY_04367"; transcript_id "RvY_04367.1"; Scaffold002 rebuild exon 2806184 2806532 . + . gene_id "RvY_04367"; transcript_id "RvY_04367.1"; Scaffold002 rebuild transcript 2808401 2812834 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; gene_name "HDC"; annotation "Histidine decarboxylase"; Pfam "[Pyridoxal_deC] Pyridoxal-dependent decarboxylase conserved domain"; CDD "Pyridoxal-dependent decarboxylase conserved domain."; EC "EC4.1.1.22"; KO "K01590"; similar_genes "DCHS_DROME(e-value:4.7e-66;bit-score:249.0)"; Scaffold002 rebuild exon 2808401 2808428 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2809067 2809239 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2809316 2809429 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2809696 2809815 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2809913 2810047 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2810405 2810548 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2810614 2810680 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2810766 2810931 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2811002 2811092 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2811212 2811310 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2811703 2812150 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild exon 2812308 2812834 . + . gene_id "RvY_04368"; transcript_id "RvY_04368.1"; Scaffold002 rebuild transcript 2821943 2822508 . + . gene_id "RvY_04369"; transcript_id "RvY_04369.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2821943 2822077 . + . gene_id "RvY_04369"; transcript_id "RvY_04369.1"; Scaffold002 rebuild exon 2822392 2822508 . + . gene_id "RvY_04369"; transcript_id "RvY_04369.1"; Scaffold002 rebuild transcript 2825157 2827451 . + . gene_id "RvY_04370"; transcript_id "RvY_04370.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2825157 2825274 . + . gene_id "RvY_04370"; transcript_id "RvY_04370.1"; Scaffold002 rebuild exon 2825346 2825919 . + . gene_id "RvY_04370"; transcript_id "RvY_04370.1"; Scaffold002 rebuild exon 2826150 2826739 . + . gene_id "RvY_04370"; transcript_id "RvY_04370.1"; Scaffold002 rebuild exon 2827273 2827451 . + . gene_id "RvY_04370"; transcript_id "RvY_04370.1"; Scaffold002 rebuild transcript 2830397 2833134 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; gene_name "Ntn_AC_NAAA"; annotation "hypothetical protein."; Pfam "[CBAH] Linear amide C-N hydrolases, choloylglycine hydrolase family|[CUB]"; CDD "AC_NAAA This conserved domain includes two closely related proteins, acid ceramidase (AC, also known as N-acylsphingosine amidohydrolase), and N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC catalyzes the hydrolysis of ceramide to sphingosine and fatty acid. Ceramide is required for the biosynthesis of most sphingolipids and plays an important role in many signal transduction pathways by inducing apoptosis and/or arresting cell growth. An inherited deficiency of AC activity leads to the lysosomal storage disorder known as Farber disease. AC is considered a ""rheostat"" important for maintaining the proper intracellular levels of these lipids since hydrolysis of ceramide is the only source of sphingosine in cells. NAAA is a eukaryotic glycoprotein that hydrolyzes bioactive N-acylethanolamines, including anandamide (an endocannabinoid) and N-palmitoylethanolamine (an anti-inflammatory and neuroprotective substance), to fatty acids and ethanolamine at acidic pH. NAAA shows structural and functional similarity to acid ceramidase, but lacks the ceramide-hydrolyzing activity of AC."; EC "EC3.5.1.23"; similar_genes "ASAH1_PANTR(e-value:2.3e-10;bit-score:63.0)"; Scaffold002 rebuild exon 2830397 2830451 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2830655 2830959 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2831155 2831354 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2831437 2831561 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2831623 2831692 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2831852 2831990 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2832054 2832144 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2832209 2832303 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2832365 2832618 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2832699 2832794 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild exon 2832915 2833134 . + . gene_id "RvY_04371"; transcript_id "RvY_04371.1"; Scaffold002 rebuild transcript 2834423 2834611 . - . gene_id "RvY_04372"; transcript_id "RvY_04372.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2834423 2834611 . - . gene_id "RvY_04372"; transcript_id "RvY_04372.1"; Scaffold002 rebuild transcript 2836126 2838694 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; gene_name "Ntn_AC_NAAA"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "AC_NAAA This conserved domain includes two closely related proteins, acid ceramidase (AC, also known as N-acylsphingosine amidohydrolase), and N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC catalyzes the hydrolysis of ceramide to sphingosine and fatty acid. Ceramide is required for the biosynthesis of most sphingolipids and plays an important role in many signal transduction pathways by inducing apoptosis and/or arresting cell growth. An inherited deficiency of AC activity leads to the lysosomal storage disorder known as Farber disease. AC is considered a ""rheostat"" important for maintaining the proper intracellular levels of these lipids since hydrolysis of ceramide is the only source of sphingosine in cells. NAAA is a eukaryotic glycoprotein that hydrolyzes bioactive N-acylethanolamines, including anandamide (an endocannabinoid) and N-palmitoylethanolamine (an anti-inflammatory and neuroprotective substance), to fatty acids and ethanolamine at acidic pH. NAAA shows structural and functional similarity to acid ceramidase, but lacks the ceramide-hydrolyzing activity of AC."; EC "EC3.5.1.23"; similar_genes "ASAH1_PANTR(e-value:2.2e-06;bit-score:50.0)"; Scaffold002 rebuild exon 2836126 2836186 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2836270 2836568 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2836798 2836997 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2837072 2837196 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2837326 2837395 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2837462 2837588 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2837670 2837760 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2837843 2837922 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2838117 2838370 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2838435 2838530 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild exon 2838595 2838694 . + . gene_id "RvY_04373"; transcript_id "RvY_04373.1"; Scaffold002 rebuild transcript 2839614 2840920 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2839614 2840037 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.1"; Scaffold002 rebuild exon 2840232 2840432 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.1"; Scaffold002 rebuild exon 2840727 2840920 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.1"; Scaffold002 rebuild transcript 2839614 2840920 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2839614 2840028 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.2"; Scaffold002 rebuild exon 2840232 2840432 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.2"; Scaffold002 rebuild exon 2840727 2840920 . + . gene_id "RvY_04374"; transcript_id "RvY_04374.2"; Scaffold002 rebuild transcript 2841169 2843757 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; gene_name "RALBP1"; annotation "RalA-binding protein 1"; Pfam "[RhoGAP]"; CDD "RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold002 rebuild exon 2841169 2841372 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2841589 2841951 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2842188 2842374 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2842453 2842705 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2842771 2842974 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2843039 2843161 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2843358 2843560 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild exon 2843624 2843757 . - . gene_id "RvY_04375"; transcript_id "RvY_04375.1"; Scaffold002 rebuild transcript 2846211 2846405 . + . gene_id "RvY_04376"; transcript_id "RvY_04376.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2846211 2846405 . + . gene_id "RvY_04376"; transcript_id "RvY_04376.1"; Scaffold002 rebuild transcript 2846497 2847304 . - . gene_id "RvY_04377"; transcript_id "RvY_04377.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2846497 2846876 . - . gene_id "RvY_04377"; transcript_id "RvY_04377.1"; Scaffold002 rebuild exon 2847118 2847304 . - . gene_id "RvY_04377"; transcript_id "RvY_04377.1"; Scaffold002 rebuild transcript 2847404 2847553 . - . gene_id "RvY_04378"; transcript_id "RvY_04378.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2847404 2847553 . - . gene_id "RvY_04378"; transcript_id "RvY_04378.1"; Scaffold002 rebuild transcript 2847977 2848982 . + . gene_id "RvY_04379"; transcript_id "RvY_04379.1"; gene_name "BIR"; annotation "hypothetical protein."; Pfam "[BIR] Inhibitor of Apoptosis domain"; CDD "Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes."; Scaffold002 rebuild exon 2847977 2848075 . + . gene_id "RvY_04379"; transcript_id "RvY_04379.1"; Scaffold002 rebuild exon 2848145 2848510 . + . gene_id "RvY_04379"; transcript_id "RvY_04379.1"; Scaffold002 rebuild exon 2848692 2848982 . + . gene_id "RvY_04379"; transcript_id "RvY_04379.1"; Scaffold002 rebuild transcript 2849735 2850656 . + . gene_id "RvY_04380"; transcript_id "RvY_04380.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2849735 2850115 . + . gene_id "RvY_04380"; transcript_id "RvY_04380.1"; Scaffold002 rebuild exon 2850372 2850656 . + . gene_id "RvY_04380"; transcript_id "RvY_04380.1"; Scaffold002 rebuild transcript 2851659 2854057 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "GTR2_BOVIN(e-value:8.4e-19;bit-score:92.0)"; Scaffold002 rebuild exon 2851659 2851880 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2851961 2852088 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2852156 2852270 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2852350 2852565 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2852630 2852817 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2852890 2853168 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2853233 2853357 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2853564 2853799 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2853870 2853968 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild exon 2854040 2854057 . - . gene_id "RvY_04381"; transcript_id "RvY_04381.1"; Scaffold002 rebuild transcript 2854615 2858398 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; gene_name "K01836"; annotation "putative Phosphoacetylglucosamine mutase"; Pfam "[PGM_PMM_II] Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II|[PGM_PMM_I] Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I|[PGM_PMM_IV] Phosphoglucomutase/phosphomannomutase, C-terminal domain"; CDD "PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located Scaffold002 rebuild exon 2854615 2854759 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2854906 2855147 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2855406 2855704 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2855817 2856225 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2856533 2856669 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2856767 2856993 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2857302 2857736 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2857947 2858150 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild exon 2858304 2858398 . - . gene_id "RvY_04382"; transcript_id "RvY_04382.1"; Scaffold002 rebuild transcript 2859010 2859657 . - . gene_id "RvY_04383"; transcript_id "RvY_04383.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2859010 2859515 . - . gene_id "RvY_04383"; transcript_id "RvY_04383.1"; Scaffold002 rebuild exon 2859579 2859657 . - . gene_id "RvY_04383"; transcript_id "RvY_04383.1"; Scaffold002 rebuild transcript 2861881 2864705 . + . gene_id "RvY_04384"; transcript_id "RvY_04384.1"; gene_name "JUN"; annotation "transcription factor AP-1"; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper|[Jun] Jun-like transcription factor"; KO "K04448"; similar_genes "JUNB_MOUSE(e-value:2.0e-11;bit-score:67.0)"; Scaffold002 rebuild exon 2861881 2862253 . + . gene_id "RvY_04384"; transcript_id "RvY_04384.1"; Scaffold002 rebuild exon 2863368 2863490 . + . gene_id "RvY_04384"; transcript_id "RvY_04384.1"; Scaffold002 rebuild exon 2863782 2864062 . + . gene_id "RvY_04384"; transcript_id "RvY_04384.1"; Scaffold002 rebuild exon 2864445 2864705 . + . gene_id "RvY_04384"; transcript_id "RvY_04384.1"; Scaffold002 rebuild transcript 2865839 2869006 . - . gene_id "RvY_04385"; transcript_id "RvY_04385.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2865839 2865948 . - . gene_id "RvY_04385"; transcript_id "RvY_04385.1"; Scaffold002 rebuild exon 2866061 2866204 . - . gene_id "RvY_04385"; transcript_id "RvY_04385.1"; Scaffold002 rebuild exon 2867786 2868050 . - . gene_id "RvY_04385"; transcript_id "RvY_04385.1"; Scaffold002 rebuild exon 2868590 2869006 . - . gene_id "RvY_04385"; transcript_id "RvY_04385.1"; Scaffold002 rebuild transcript 2875503 2876854 . - . gene_id "RvY_04386"; transcript_id "RvY_04386.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2875503 2876014 . - . gene_id "RvY_04386"; transcript_id "RvY_04386.1"; Scaffold002 rebuild exon 2876085 2876351 . - . gene_id "RvY_04386"; transcript_id "RvY_04386.1"; Scaffold002 rebuild exon 2876518 2876854 . - . gene_id "RvY_04386"; transcript_id "RvY_04386.1"; Scaffold002 rebuild transcript 2877279 2878754 . - . gene_id "RvY_04387"; transcript_id "RvY_04387.1"; gene_name "c-SKI_SMAD_bind"; annotation "Ladybird homeobox corepressor 1 homolog"; Pfam "[c-SKI_SMAD_bind] c-SKI Smad4 binding domain|[Ski_Sno] SKI/SNO/DAC family"; CDD "c-SKI Smad4 binding domain. c-SKI is an oncoprotein that inhibits TGF-beta signaling through interaction with Smad proteins. This domain binds to Smad4."; similar_genes "LBXCO_DANRE(e-value:6.4e-72;bit-score:268.0)"; Scaffold002 rebuild exon 2877279 2877794 . - . gene_id "RvY_04387"; transcript_id "RvY_04387.1"; Scaffold002 rebuild exon 2878095 2878754 . - . gene_id "RvY_04387"; transcript_id "RvY_04387.1"; Scaffold002 rebuild transcript 2881265 2883444 . - . gene_id "RvY_04388"; transcript_id "RvY_04388.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2881265 2881713 . - . gene_id "RvY_04388"; transcript_id "RvY_04388.1"; Scaffold002 rebuild exon 2881774 2882784 . - . gene_id "RvY_04388"; transcript_id "RvY_04388.1"; Scaffold002 rebuild exon 2883033 2883117 . - . gene_id "RvY_04388"; transcript_id "RvY_04388.1"; Scaffold002 rebuild exon 2883202 2883444 . - . gene_id "RvY_04388"; transcript_id "RvY_04388.1"; Scaffold002 rebuild transcript 2884703 2886582 . - . gene_id "RvY_04389"; transcript_id "RvY_04389.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2884703 2885162 . - . gene_id "RvY_04389"; transcript_id "RvY_04389.1"; Scaffold002 rebuild exon 2885243 2885669 . - . gene_id "RvY_04389"; transcript_id "RvY_04389.1"; Scaffold002 rebuild exon 2885756 2885870 . - . gene_id "RvY_04389"; transcript_id "RvY_04389.1"; Scaffold002 rebuild exon 2885880 2886351 . - . gene_id "RvY_04389"; transcript_id "RvY_04389.1"; Scaffold002 rebuild exon 2886431 2886582 . - . gene_id "RvY_04389"; transcript_id "RvY_04389.1"; Scaffold002 rebuild transcript 2889338 2890491 . + . gene_id "RvY_04390"; transcript_id "RvY_04390.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2889338 2889743 . + . gene_id "RvY_04390"; transcript_id "RvY_04390.1"; Scaffold002 rebuild exon 2890304 2890491 . + . gene_id "RvY_04390"; transcript_id "RvY_04390.1"; Scaffold002 rebuild transcript 2890925 2891812 . - . gene_id "RvY_04391"; transcript_id "RvY_04391.1"; gene_name "PTZ00110"; annotation "putative Probable ATP-dependent RNA helicase DDX17"; Pfam "[Helicase_C] Helicase conserved C-terminal domain"; CDD "helicase; Provisional"; EC "EC3.6.1.-"; similar_genes "DDX17_MOUSE(e-value:8.9e-27;bit-score:118.0)"; Scaffold002 rebuild exon 2890925 2891049 . - . gene_id "RvY_04391"; transcript_id "RvY_04391.1"; Scaffold002 rebuild exon 2891114 2891356 . - . gene_id "RvY_04391"; transcript_id "RvY_04391.1"; Scaffold002 rebuild exon 2891422 2891479 . - . gene_id "RvY_04391"; transcript_id "RvY_04391.1"; Scaffold002 rebuild exon 2891771 2891812 . - . gene_id "RvY_04391"; transcript_id "RvY_04391.1"; Scaffold002 rebuild transcript 2892016 2893782 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; gene_name "PTZ00110"; annotation "DEAD-box ATP-dependent RNA helicase 30"; Pfam "[DEAD] DEAD/DEAH box helicase"; CDD "helicase; Provisional"; EC "EC3.6.1.-"; similar_genes "RH30_ARATH(e-value:1.2e-66;bit-score:250.0)"; Scaffold002 rebuild exon 2892016 2892198 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; Scaffold002 rebuild exon 2892330 2892632 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; Scaffold002 rebuild exon 2892922 2892987 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; Scaffold002 rebuild exon 2893063 2893293 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; Scaffold002 rebuild exon 2893353 2893689 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; Scaffold002 rebuild exon 2893772 2893782 . - . gene_id "RvY_04392"; transcript_id "RvY_04392.1"; Scaffold002 rebuild transcript 2896556 2899057 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; gene_name "HXT"; annotation "MFS transporter, SP family, sugar:H+ symporter"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; KO "K08139"; similar_genes "GTR4_HUMAN(e-value:8.5e-21;bit-score:98.0)"; Scaffold002 rebuild exon 2896556 2896776 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2896848 2896972 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2897263 2897541 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2897611 2897798 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2898005 2898220 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2898282 2898396 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2898594 2898721 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild exon 2898815 2899057 . + . gene_id "RvY_04393"; transcript_id "RvY_04393.1"; Scaffold002 rebuild transcript 2900230 2901888 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; annotation "hypothetical protein."; Pfam "(1,3)[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1,2)GTR5_BOVIN(e-value:3.2e-16;bit-score:83.0)(3)GTR5_BOVIN(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 2900230 2900269 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild exon 2900337 2900615 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild exon 2900676 2900863 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild exon 2900940 2901155 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild exon 2901241 2901352 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild exon 2901451 2901578 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild exon 2901661 2901888 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.1"; Scaffold002 rebuild transcript 2900303 2901888 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; annotation "hypothetical protein."; Pfam "(1,3)[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1,2)GTR5_BOVIN(e-value:3.2e-16;bit-score:83.0)(3)GTR5_BOVIN(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 2900303 2900615 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; Scaffold002 rebuild exon 2900676 2900863 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; Scaffold002 rebuild exon 2900940 2901155 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; Scaffold002 rebuild exon 2901241 2901352 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; Scaffold002 rebuild exon 2901451 2901578 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; Scaffold002 rebuild exon 2901661 2901888 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.2"; Scaffold002 rebuild transcript 2899315 2900629 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; annotation "hypothetical protein."; Pfam "(1,3)[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1,2)GTR5_BOVIN(e-value:3.2e-16;bit-score:83.0)(3)GTR5_BOVIN(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 2899315 2899378 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; Scaffold002 rebuild exon 2899504 2899580 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; Scaffold002 rebuild exon 2899647 2899745 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; Scaffold002 rebuild exon 2899834 2900069 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; Scaffold002 rebuild exon 2900145 2900269 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; Scaffold002 rebuild exon 2900337 2900629 . + . gene_id "RvY_04394"; transcript_id "RvY_04394.3"; Scaffold002 rebuild transcript 2903022 2903718 . - . gene_id "RvY_04395"; transcript_id "RvY_04395.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2903022 2903178 . - . gene_id "RvY_04395"; transcript_id "RvY_04395.1"; Scaffold002 rebuild exon 2903684 2903718 . - . gene_id "RvY_04395"; transcript_id "RvY_04395.1"; Scaffold002 rebuild transcript 2904049 2904318 . + . gene_id "RvY_04396"; transcript_id "RvY_04396.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2904049 2904318 . + . gene_id "RvY_04396"; transcript_id "RvY_04396.1"; Scaffold002 rebuild transcript 2904919 2905236 . - . gene_id "RvY_04397"; transcript_id "RvY_04397.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2904919 2905236 . - . gene_id "RvY_04397"; transcript_id "RvY_04397.1"; Scaffold002 rebuild transcript 2905938 2906360 . - . gene_id "RvY_04398"; transcript_id "RvY_04398.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2905938 2906360 . - . gene_id "RvY_04398"; transcript_id "RvY_04398.1"; Scaffold002 rebuild transcript 2906770 2907176 . - . gene_id "RvY_04399"; transcript_id "RvY_04399.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2906770 2906849 . - . gene_id "RvY_04399"; transcript_id "RvY_04399.1"; Scaffold002 rebuild exon 2906930 2907176 . - . gene_id "RvY_04399"; transcript_id "RvY_04399.1"; Scaffold002 rebuild transcript 2907981 2909275 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2907981 2908317 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild exon 2908376 2908507 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild exon 2908587 2908635 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild exon 2908693 2908779 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild exon 2908927 2909009 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild exon 2909076 2909152 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild exon 2909237 2909275 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.1"; Scaffold002 rebuild transcript 2907981 2909125 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2907981 2908317 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; Scaffold002 rebuild exon 2908376 2908507 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; Scaffold002 rebuild exon 2908587 2908635 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; Scaffold002 rebuild exon 2908693 2908779 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; Scaffold002 rebuild exon 2908927 2909009 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; Scaffold002 rebuild exon 2909076 2909125 . - . gene_id "RvY_04400"; transcript_id "RvY_04400.2"; Scaffold002 rebuild transcript 2909851 2910333 . - . gene_id "RvY_04401"; transcript_id "RvY_04401.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2909851 2910333 . - . gene_id "RvY_04401"; transcript_id "RvY_04401.1"; Scaffold002 rebuild transcript 2912367 2913519 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2912367 2912482 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2912554 2912607 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2912667 2912753 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2912819 2912901 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2912968 2913066 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2913161 2913182 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2913264 2913345 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild exon 2913403 2913519 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.1"; Scaffold002 rebuild transcript 2911897 2912575 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2911897 2912308 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.2"; Scaffold002 rebuild exon 2912371 2912482 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.2"; Scaffold002 rebuild exon 2912554 2912575 . - . gene_id "RvY_04402"; transcript_id "RvY_04402.2"; Scaffold002 rebuild transcript 2914045 2917298 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; annotation "hypothetical protein."; Pfam "[GH3] GH3 auxin-responsive promoter"; similar_genes "GHDC_HUMAN(e-value:6.0e-11;bit-score:65.0)"; Scaffold002 rebuild exon 2914045 2914266 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2914354 2914612 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2914691 2914751 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2914922 2914988 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2915086 2915258 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2915339 2915455 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2915525 2915930 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2916297 2916814 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2917020 2917231 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild exon 2917288 2917298 . - . gene_id "RvY_04403"; transcript_id "RvY_04403.1"; Scaffold002 rebuild transcript 2917874 2918349 . - . gene_id "RvY_04404"; transcript_id "RvY_04404.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2917874 2918046 . - . gene_id "RvY_04404"; transcript_id "RvY_04404.1"; Scaffold002 rebuild exon 2918199 2918349 . - . gene_id "RvY_04404"; transcript_id "RvY_04404.1"; Scaffold002 rebuild transcript 2920973 2921254 . + . gene_id "RvY_04405"; transcript_id "RvY_04405.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2920973 2921254 . + . gene_id "RvY_04405"; transcript_id "RvY_04405.1"; Scaffold002 rebuild transcript 2924443 2924688 . + . gene_id "RvY_04406"; transcript_id "RvY_04406.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2924443 2924688 . + . gene_id "RvY_04406"; transcript_id "RvY_04406.1"; Scaffold002 rebuild transcript 2927661 2927969 . + . gene_id "RvY_04407"; transcript_id "RvY_04407.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2927661 2927969 . + . gene_id "RvY_04407"; transcript_id "RvY_04407.1"; Scaffold002 rebuild transcript 2928453 2930539 . + . gene_id "RvY_04408"; transcript_id "RvY_04408.1"; gene_name "GFI1"; annotation "putative Zinc finger protein Gfi-1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09223"; similar_genes "GFI1_MOUSE(e-value:5.5e-35;bit-score:145.0)"; Scaffold002 rebuild exon 2928453 2928636 . + . gene_id "RvY_04408"; transcript_id "RvY_04408.1"; Scaffold002 rebuild exon 2928840 2929253 . + . gene_id "RvY_04408"; transcript_id "RvY_04408.1"; Scaffold002 rebuild exon 2929634 2930236 . + . gene_id "RvY_04408"; transcript_id "RvY_04408.1"; Scaffold002 rebuild exon 2930340 2930539 . + . gene_id "RvY_04408"; transcript_id "RvY_04408.1"; Scaffold002 rebuild transcript 2933192 2933551 . - . gene_id "RvY_04409"; transcript_id "RvY_04409.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2933192 2933551 . - . gene_id "RvY_04409"; transcript_id "RvY_04409.1"; Scaffold002 rebuild transcript 2934542 2936260 . - . gene_id "RvY_04410"; transcript_id "RvY_04410.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2934542 2934700 . - . gene_id "RvY_04410"; transcript_id "RvY_04410.1"; Scaffold002 rebuild exon 2935080 2935664 . - . gene_id "RvY_04410"; transcript_id "RvY_04410.1"; Scaffold002 rebuild exon 2935745 2936260 . - . gene_id "RvY_04410"; transcript_id "RvY_04410.1"; Scaffold002 rebuild transcript 2936833 2937267 . - . gene_id "RvY_04411"; transcript_id "RvY_04411.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2936833 2936948 . - . gene_id "RvY_04411"; transcript_id "RvY_04411.1"; Scaffold002 rebuild exon 2937153 2937267 . - . gene_id "RvY_04411"; transcript_id "RvY_04411.1"; Scaffold002 rebuild transcript 2938329 2939243 . - . gene_id "RvY_04412"; transcript_id "RvY_04412.1"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; Scaffold002 rebuild exon 2938329 2939243 . - . gene_id "RvY_04412"; transcript_id "RvY_04412.1"; Scaffold002 rebuild transcript 2939626 2939901 . - . gene_id "RvY_04413"; transcript_id "RvY_04413.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2939626 2939901 . - . gene_id "RvY_04413"; transcript_id "RvY_04413.1"; Scaffold002 rebuild transcript 2940757 2941533 . + . gene_id "RvY_04414"; transcript_id "RvY_04414.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2940757 2940943 . + . gene_id "RvY_04414"; transcript_id "RvY_04414.1"; Scaffold002 rebuild exon 2941066 2941305 . + . gene_id "RvY_04414"; transcript_id "RvY_04414.1"; Scaffold002 rebuild exon 2941382 2941533 . + . gene_id "RvY_04414"; transcript_id "RvY_04414.1"; Scaffold002 rebuild transcript 2941945 2942220 . + . gene_id "RvY_04415"; transcript_id "RvY_04415.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2941945 2942220 . + . gene_id "RvY_04415"; transcript_id "RvY_04415.1"; Scaffold002 rebuild transcript 2944626 2945693 . - . gene_id "RvY_04416"; transcript_id "RvY_04416.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold002 rebuild exon 2944626 2944726 . - . gene_id "RvY_04416"; transcript_id "RvY_04416.1"; Scaffold002 rebuild exon 2944791 2944842 . - . gene_id "RvY_04416"; transcript_id "RvY_04416.1"; Scaffold002 rebuild exon 2944917 2945024 . - . gene_id "RvY_04416"; transcript_id "RvY_04416.1"; Scaffold002 rebuild exon 2945155 2945347 . - . gene_id "RvY_04416"; transcript_id "RvY_04416.1"; Scaffold002 rebuild exon 2945434 2945693 . - . gene_id "RvY_04416"; transcript_id "RvY_04416.1"; Scaffold002 rebuild transcript 2948099 2949730 . - . gene_id "RvY_04417"; transcript_id "RvY_04417.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2948099 2948355 . - . gene_id "RvY_04417"; transcript_id "RvY_04417.1"; Scaffold002 rebuild exon 2949323 2949505 . - . gene_id "RvY_04417"; transcript_id "RvY_04417.1"; Scaffold002 rebuild exon 2949574 2949730 . - . gene_id "RvY_04417"; transcript_id "RvY_04417.1"; Scaffold002 rebuild transcript 2950201 2950418 . + . gene_id "RvY_04418"; transcript_id "RvY_04418.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2950201 2950266 . + . gene_id "RvY_04418"; transcript_id "RvY_04418.1"; Scaffold002 rebuild exon 2950347 2950418 . + . gene_id "RvY_04418"; transcript_id "RvY_04418.1"; Scaffold002 rebuild transcript 2951562 2951972 . + . gene_id "RvY_04419"; transcript_id "RvY_04419.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2951562 2951972 . + . gene_id "RvY_04419"; transcript_id "RvY_04419.1"; Scaffold002 rebuild transcript 2952312 2952779 . - . gene_id "RvY_04420"; transcript_id "RvY_04420.1"; annotation "hypothetical protein."; Pfam "[SET]"; Scaffold002 rebuild exon 2952312 2952779 . - . gene_id "RvY_04420"; transcript_id "RvY_04420.1"; Scaffold002 rebuild transcript 2953418 2953861 . - . gene_id "RvY_04421"; transcript_id "RvY_04421.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2953418 2953861 . - . gene_id "RvY_04421"; transcript_id "RvY_04421.1"; Scaffold002 rebuild transcript 2955311 2955620 . + . gene_id "RvY_04422"; transcript_id "RvY_04422.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2955311 2955368 . + . gene_id "RvY_04422"; transcript_id "RvY_04422.1"; Scaffold002 rebuild exon 2955499 2955620 . + . gene_id "RvY_04422"; transcript_id "RvY_04422.1"; Scaffold002 rebuild transcript 2956954 2958280 . + . gene_id "RvY_04423"; transcript_id "RvY_04423.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2956954 2957164 . + . gene_id "RvY_04423"; transcript_id "RvY_04423.1"; Scaffold002 rebuild exon 2957268 2957479 . + . gene_id "RvY_04423"; transcript_id "RvY_04423.1"; Scaffold002 rebuild exon 2958230 2958280 . + . gene_id "RvY_04423"; transcript_id "RvY_04423.1"; Scaffold002 rebuild transcript 2958382 2959985 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2958382 2958519 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; Scaffold002 rebuild exon 2958777 2958899 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; Scaffold002 rebuild exon 2959019 2959108 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; Scaffold002 rebuild exon 2959134 2959299 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; Scaffold002 rebuild exon 2959395 2959691 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; Scaffold002 rebuild exon 2959801 2959985 . + . gene_id "RvY_04424"; transcript_id "RvY_04424.1"; Scaffold002 rebuild transcript 2960899 2961642 . - . gene_id "RvY_04425"; transcript_id "RvY_04425.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2960899 2961642 . - . gene_id "RvY_04425"; transcript_id "RvY_04425.1"; Scaffold002 rebuild transcript 2961644 2962618 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2961644 2961721 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.1"; Scaffold002 rebuild exon 2961781 2961923 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.1"; Scaffold002 rebuild exon 2962005 2962120 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.1"; Scaffold002 rebuild exon 2962614 2962618 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.1"; Scaffold002 rebuild transcript 2961739 2962128 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2961739 2961923 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.2"; Scaffold002 rebuild exon 2962005 2962128 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.2"; Scaffold002 rebuild transcript 2962121 2962396 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2962121 2962396 . - . gene_id "RvY_04426"; transcript_id "RvY_04426.3"; Scaffold002 rebuild transcript 2964168 2965243 . + . gene_id "RvY_04427"; transcript_id "RvY_04427.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[DDE_3] DDE superfamily endonuclease"; Scaffold002 rebuild exon 2964168 2964360 . + . gene_id "RvY_04427"; transcript_id "RvY_04427.1"; Scaffold002 rebuild exon 2964510 2965243 . + . gene_id "RvY_04427"; transcript_id "RvY_04427.1"; Scaffold002 rebuild transcript 2966420 2967172 . + . gene_id "RvY_04428"; transcript_id "RvY_04428.1"; annotation "hypothetical protein."; similar_genes "GRP2_ORYSJ(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 2966420 2967172 . + . gene_id "RvY_04428"; transcript_id "RvY_04428.1"; Scaffold002 rebuild transcript 2969105 2970063 . + . gene_id "RvY_04429"; transcript_id "RvY_04429.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold002 rebuild exon 2969105 2969290 . + . gene_id "RvY_04429"; transcript_id "RvY_04429.1"; Scaffold002 rebuild exon 2969350 2969499 . + . gene_id "RvY_04429"; transcript_id "RvY_04429.1"; Scaffold002 rebuild exon 2969577 2969876 . + . gene_id "RvY_04429"; transcript_id "RvY_04429.1"; Scaffold002 rebuild exon 2969977 2970063 . + . gene_id "RvY_04429"; transcript_id "RvY_04429.1"; Scaffold002 rebuild transcript 2970518 2972338 . + . gene_id "RvY_04430"; transcript_id "RvY_04430.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2970518 2970635 . + . gene_id "RvY_04430"; transcript_id "RvY_04430.1"; Scaffold002 rebuild exon 2970703 2970969 . + . gene_id "RvY_04430"; transcript_id "RvY_04430.1"; Scaffold002 rebuild exon 2971116 2971252 . + . gene_id "RvY_04430"; transcript_id "RvY_04430.1"; Scaffold002 rebuild exon 2971868 2972338 . + . gene_id "RvY_04430"; transcript_id "RvY_04430.1"; Scaffold002 rebuild transcript 2973684 2974136 . + . gene_id "RvY_04431"; transcript_id "RvY_04431.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2973684 2974136 . + . gene_id "RvY_04431"; transcript_id "RvY_04431.1"; Scaffold002 rebuild transcript 2974834 2975019 . + . gene_id "RvY_04432"; transcript_id "RvY_04432.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2974834 2975019 . + . gene_id "RvY_04432"; transcript_id "RvY_04432.1"; Scaffold002 rebuild transcript 2975859 2976152 . - . gene_id "RvY_04433"; transcript_id "RvY_04433.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 2975859 2976152 . - . gene_id "RvY_04433"; transcript_id "RvY_04433.1"; Scaffold002 rebuild transcript 2989866 2990198 . + . gene_id "RvY_04434"; transcript_id "RvY_04434.1"; annotation "hypothetical protein."; similar_genes "CHB1_BOMMO(e-value:3.9e-06;bit-score:49.0)"; Scaffold002 rebuild exon 2989866 2989886 . + . gene_id "RvY_04434"; transcript_id "RvY_04434.1"; Scaffold002 rebuild exon 2989974 2990198 . + . gene_id "RvY_04434"; transcript_id "RvY_04434.1"; Scaffold002 rebuild transcript 2990396 2991235 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.1"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; similar_genes "CJ011_HUMAN(e-value:2.3e-08;bit-score:57.0)"; Scaffold002 rebuild exon 2990396 2990666 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.1"; Scaffold002 rebuild exon 2990734 2991104 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.1"; Scaffold002 rebuild exon 2991203 2991235 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.1"; Scaffold002 rebuild transcript 2990730 2991235 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.2"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; similar_genes "CJ011_HUMAN(e-value:2.3e-08;bit-score:57.0)"; Scaffold002 rebuild exon 2990730 2991104 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.2"; Scaffold002 rebuild exon 2991203 2991235 . - . gene_id "RvY_04435"; transcript_id "RvY_04435.2"; Scaffold002 rebuild transcript 2991936 2995339 . + . gene_id "RvY_04436"; transcript_id "RvY_04436.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 2991936 2992811 . + . gene_id "RvY_04436"; transcript_id "RvY_04436.1"; Scaffold002 rebuild exon 2993341 2993569 . + . gene_id "RvY_04436"; transcript_id "RvY_04436.1"; Scaffold002 rebuild exon 2995167 2995339 . + . gene_id "RvY_04436"; transcript_id "RvY_04436.1"; Scaffold002 rebuild transcript 2997857 3000628 . + . gene_id "RvY_04437"; transcript_id "RvY_04437.1"; gene_name "NKX6-2"; annotation "homeobox protein Nkx-6.2"; Pfam "[Homeobox]"; KO "K09350"; similar_genes "NKX63_XENLA(e-value:5.1e-25;bit-score:112.0)"; Scaffold002 rebuild exon 2997857 2998337 . + . gene_id "RvY_04437"; transcript_id "RvY_04437.1"; Scaffold002 rebuild exon 2998664 2998842 . + . gene_id "RvY_04437"; transcript_id "RvY_04437.1"; Scaffold002 rebuild exon 3000491 3000628 . + . gene_id "RvY_04437"; transcript_id "RvY_04437.1"; Scaffold002 rebuild transcript 3001156 3002034 . - . gene_id "RvY_04438"; transcript_id "RvY_04438.1"; annotation "hypothetical protein."; similar_genes "ACN1_ACAGO(e-value:3.5e-11;bit-score:66.0)"; Scaffold002 rebuild exon 3001156 3001883 . - . gene_id "RvY_04438"; transcript_id "RvY_04438.1"; Scaffold002 rebuild exon 3002004 3002034 . - . gene_id "RvY_04438"; transcript_id "RvY_04438.1"; Scaffold002 rebuild transcript 3002376 3002549 . + . gene_id "RvY_04439"; transcript_id "RvY_04439.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3002376 3002549 . + . gene_id "RvY_04439"; transcript_id "RvY_04439.1"; Scaffold002 rebuild transcript 3002773 3004355 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 3002773 3003017 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; Scaffold002 rebuild exon 3003098 3003169 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; Scaffold002 rebuild exon 3003414 3003574 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; Scaffold002 rebuild exon 3003660 3003777 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; Scaffold002 rebuild exon 3003994 3004200 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; Scaffold002 rebuild exon 3004301 3004355 . - . gene_id "RvY_04440"; transcript_id "RvY_04440.1"; Scaffold002 rebuild transcript 3005334 3006955 . - . gene_id "RvY_04441"; transcript_id "RvY_04441.1"; annotation "hypothetical protein."; Pfam "[MRP-L28] Mitochondrial ribosomal protein L28"; Scaffold002 rebuild exon 3005334 3005444 . - . gene_id "RvY_04441"; transcript_id "RvY_04441.1"; Scaffold002 rebuild exon 3005535 3005733 . - . gene_id "RvY_04441"; transcript_id "RvY_04441.1"; Scaffold002 rebuild exon 3006554 3006724 . - . gene_id "RvY_04441"; transcript_id "RvY_04441.1"; Scaffold002 rebuild exon 3006786 3006955 . - . gene_id "RvY_04441"; transcript_id "RvY_04441.1"; Scaffold002 rebuild transcript 3007387 3008964 . - . gene_id "RvY_04442"; transcript_id "RvY_04442.1"; annotation "hypothetical protein."; KO "K14001"; Scaffold002 rebuild exon 3007387 3007704 . - . gene_id "RvY_04442"; transcript_id "RvY_04442.1"; Scaffold002 rebuild exon 3007777 3008217 . - . gene_id "RvY_04442"; transcript_id "RvY_04442.1"; Scaffold002 rebuild exon 3008356 3008964 . - . gene_id "RvY_04442"; transcript_id "RvY_04442.1"; Scaffold002 rebuild transcript 3009816 3010207 . - . gene_id "RvY_04443"; transcript_id "RvY_04443.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3009816 3010024 . - . gene_id "RvY_04443"; transcript_id "RvY_04443.1"; Scaffold002 rebuild exon 3010141 3010207 . - . gene_id "RvY_04443"; transcript_id "RvY_04443.1"; Scaffold002 rebuild transcript 3010778 3011648 . - . gene_id "RvY_04444"; transcript_id "RvY_04444.1"; gene_name "chitinase_glyco_hydro_19"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_19] Chitinase class I"; CDD "Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence."; Scaffold002 rebuild exon 3010778 3011093 . - . gene_id "RvY_04444"; transcript_id "RvY_04444.1"; Scaffold002 rebuild exon 3011177 3011468 . - . gene_id "RvY_04444"; transcript_id "RvY_04444.1"; Scaffold002 rebuild exon 3011555 3011648 . - . gene_id "RvY_04444"; transcript_id "RvY_04444.1"; Scaffold002 rebuild transcript 3012538 3012714 . - . gene_id "RvY_04445"; transcript_id "RvY_04445.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3012538 3012714 . - . gene_id "RvY_04445"; transcript_id "RvY_04445.1"; Scaffold002 rebuild transcript 3014991 3015940 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3014991 3015275 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.1"; Scaffold002 rebuild exon 3015355 3015428 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.1"; Scaffold002 rebuild exon 3015782 3015852 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.1"; Scaffold002 rebuild exon 3015921 3015940 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.1"; Scaffold002 rebuild transcript 3014991 3015863 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3014991 3015275 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.2"; Scaffold002 rebuild exon 3015355 3015428 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.2"; Scaffold002 rebuild exon 3015782 3015863 . + . gene_id "RvY_04446"; transcript_id "RvY_04446.2"; Scaffold002 rebuild transcript 3017720 3021633 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; gene_name "PRPF39"; annotation "pre-mRNA-processing factor 39"; Pfam "[TPR_14] Tetratricopeptide repeat"; CDD "(1)Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]"; KO "K13217"; similar_genes "PRP39_DANRE(e-value:1.5e-24;bit-score:111.0)"; Scaffold002 rebuild exon 3017720 3018073 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3018444 3018569 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3018876 3018991 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3019051 3019218 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3019292 3019376 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3019448 3019489 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3019596 3019868 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3019935 3020064 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3020328 3020647 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3020714 3020898 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3021135 3021408 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild exon 3021505 3021633 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.1"; Scaffold002 rebuild transcript 3018648 3021633 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; gene_name "PRPF39"; annotation "pre-mRNA-processing factor 39"; Pfam "[TPR_14] Tetratricopeptide repeat"; CDD "(1)Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]"; KO "K13217"; similar_genes "PRP39_DANRE(e-value:1.5e-24;bit-score:111.0)"; Scaffold002 rebuild exon 3018648 3018776 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3018876 3018991 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3019051 3019218 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3019292 3019376 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3019448 3019489 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3019596 3019868 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3019935 3020064 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3020328 3020647 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3020714 3020898 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3021135 3021408 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild exon 3021505 3021633 . + . gene_id "RvY_04447"; transcript_id "RvY_04447.2"; Scaffold002 rebuild transcript 3022088 3023715 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; gene_name "Pancreat_lipase_like"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Lipase]|[Abhydrolase_6] Alpha/beta hydrolase family"; CDD "Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold002 rebuild exon 3022088 3022369 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3022429 3022486 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3022569 3022701 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3022781 3022940 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3023023 3023074 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3023140 3023185 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3023284 3023333 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3023415 3023473 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild exon 3023569 3023715 . + . gene_id "RvY_04448"; transcript_id "RvY_04448.1"; Scaffold002 rebuild transcript 3025016 3025201 . + . gene_id "RvY_04449"; transcript_id "RvY_04449.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3025016 3025201 . + . gene_id "RvY_04449"; transcript_id "RvY_04449.1"; Scaffold002 rebuild transcript 3026672 3026995 . + . gene_id "RvY_04450"; transcript_id "RvY_04450.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3026672 3026995 . + . gene_id "RvY_04450"; transcript_id "RvY_04450.1"; Scaffold002 rebuild transcript 3027155 3028190 . + . gene_id "RvY_04451"; transcript_id "RvY_04451.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP2DJ_CALJA(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 3027155 3027470 . + . gene_id "RvY_04451"; transcript_id "RvY_04451.1"; Scaffold002 rebuild exon 3027760 3028190 . + . gene_id "RvY_04451"; transcript_id "RvY_04451.1"; Scaffold002 rebuild transcript 3028724 3031679 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; gene_name "NR1B1"; annotation "nuclear receptor, subfamily 1, group B, member 1"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; KO "K08527"; similar_genes "RARG_NOTVI(e-value:1.1e-24;bit-score:111.0)"; Scaffold002 rebuild exon 3028724 3028986 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3029357 3029515 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3029590 3029794 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3029882 3030070 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3030161 3030294 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3030510 3030651 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3031039 3031373 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild exon 3031508 3031679 . - . gene_id "RvY_04452"; transcript_id "RvY_04452.1"; Scaffold002 rebuild transcript 3032825 3035120 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; gene_name "phoA"; annotation "alkaline phosphatase [EC:3.1.3.1]"; Pfam "[Alk_phosphatase] Alkaline phosphatase|[Metalloenzyme] Metalloenzyme superfamily"; CDD "Alkaline phosphatase homologues."; EC "EC3.1.3.1"; KO "K01077"; similar_genes "PPBT_CHICK(e-value:1.7e-21;bit-score:100.0)"; Scaffold002 rebuild exon 3032825 3032894 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; Scaffold002 rebuild exon 3032974 3033194 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; Scaffold002 rebuild exon 3033260 3033613 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; Scaffold002 rebuild exon 3033814 3034327 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; Scaffold002 rebuild exon 3034413 3034586 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; Scaffold002 rebuild exon 3034666 3035120 . + . gene_id "RvY_04453"; transcript_id "RvY_04453.1"; Scaffold002 rebuild transcript 3036824 3037743 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.1"; gene_name "alkPPc"; annotation "hypothetical protein."; Pfam "[Alk_phosphatase] Alkaline phosphatase|[Metalloenzyme] Metalloenzyme superfamily"; CDD "Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity."; EC "EC3.1.3.1"; similar_genes "PPBT_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 3036824 3037364 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.1"; Scaffold002 rebuild exon 3037487 3037743 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.1"; Scaffold002 rebuild transcript 3036824 3037804 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.2"; gene_name "alkPPc"; annotation "hypothetical protein."; Pfam "[Alk_phosphatase] Alkaline phosphatase|[Metalloenzyme] Metalloenzyme superfamily"; CDD "Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity."; EC "EC3.1.3.1"; similar_genes "PPBT_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 3036824 3037364 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.2"; Scaffold002 rebuild exon 3037487 3037651 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.2"; Scaffold002 rebuild exon 3037737 3037804 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.2"; Scaffold002 rebuild transcript 3036824 3037520 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.3"; gene_name "alkPPc"; annotation "hypothetical protein."; Pfam "[Alk_phosphatase] Alkaline phosphatase|[Metalloenzyme] Metalloenzyme superfamily"; CDD "Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity."; EC "EC3.1.3.1"; similar_genes "PPBT_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 3036824 3037368 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.3"; Scaffold002 rebuild exon 3037487 3037520 . + . gene_id "RvY_04454"; transcript_id "RvY_04454.3"; Scaffold002 rebuild transcript 3037992 3038459 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3037992 3038459 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.1"; Scaffold002 rebuild transcript 3037992 3038459 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3037992 3038185 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.2"; Scaffold002 rebuild exon 3038282 3038459 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.2"; Scaffold002 rebuild transcript 3038051 3038383 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3038051 3038383 . - . gene_id "RvY_04455"; transcript_id "RvY_04455.3"; Scaffold002 rebuild transcript 3039173 3040102 . + . gene_id "RvY_04456"; transcript_id "RvY_04456.1"; gene_name "cdd"; annotation "cytidine deaminase [EC:3.5.4.5]"; Pfam "[dCMP_cyt_deam_2] Cytidine and deoxycytidylate deaminase zinc-binding region|[dCMP_cyt_deam_1] Cytidine and deoxycytidylate deaminase zinc-binding region"; CDD "cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine."; EC "EC3.5.4.5"; KO "K01489"; Scaffold002 rebuild exon 3039173 3039212 . + . gene_id "RvY_04456"; transcript_id "RvY_04456.1"; Scaffold002 rebuild exon 3039298 3039420 . + . gene_id "RvY_04456"; transcript_id "RvY_04456.1"; Scaffold002 rebuild exon 3039520 3039631 . + . gene_id "RvY_04456"; transcript_id "RvY_04456.1"; Scaffold002 rebuild exon 3039865 3040102 . + . gene_id "RvY_04456"; transcript_id "RvY_04456.1"; Scaffold002 rebuild transcript 3040385 3047374 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; gene_name "Pat_PNPLA6_PNPLA7"; annotation "Uncharacterized NTE family protein ZK370.4"; Pfam "[Patatin] Patatin-like phospholipase|[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes PNPLA6 and PNPLA7 from Homo sapiens, YMF9 from Yeast, and Swiss Cheese protein (sws) from Drosophila melanogaster."; KO "K14676"; similar_genes "YOL4_CAEEL(e-value:1.8e-63;bit-score:240.0)"; Scaffold002 rebuild exon 3040385 3040787 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3040980 3041245 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3041313 3041558 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3041714 3041907 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3041968 3042358 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3042583 3042727 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3042802 3043067 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3043271 3043655 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3044393 3044621 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3044678 3044873 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3044979 3045145 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3045473 3045711 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3045773 3046141 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3046618 3046808 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild exon 3047081 3047374 . - . gene_id "RvY_04457"; transcript_id "RvY_04457.1"; Scaffold002 rebuild transcript 3048765 3049768 . + . gene_id "RvY_04458"; transcript_id "RvY_04458.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3048765 3049267 . + . gene_id "RvY_04458"; transcript_id "RvY_04458.1"; Scaffold002 rebuild exon 3049346 3049566 . + . gene_id "RvY_04458"; transcript_id "RvY_04458.1"; Scaffold002 rebuild exon 3049638 3049768 . + . gene_id "RvY_04458"; transcript_id "RvY_04458.1"; Scaffold002 rebuild transcript 3049928 3050749 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 3049928 3050075 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.1"; Scaffold002 rebuild exon 3050144 3050359 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.1"; Scaffold002 rebuild exon 3050436 3050749 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.1"; Scaffold002 rebuild transcript 3049928 3050439 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.2"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 3049928 3050075 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.2"; Scaffold002 rebuild exon 3050144 3050439 . + . gene_id "RvY_04459"; transcript_id "RvY_04459.2"; Scaffold002 rebuild transcript 3051110 3051340 . - . gene_id "RvY_04460"; transcript_id "RvY_04460.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3051110 3051340 . - . gene_id "RvY_04460"; transcript_id "RvY_04460.1"; Scaffold002 rebuild transcript 3051533 3052277 . - . gene_id "RvY_04461"; transcript_id "RvY_04461.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3051533 3051744 . - . gene_id "RvY_04461"; transcript_id "RvY_04461.1"; Scaffold002 rebuild exon 3051893 3051996 . - . gene_id "RvY_04461"; transcript_id "RvY_04461.1"; Scaffold002 rebuild exon 3052210 3052277 . - . gene_id "RvY_04461"; transcript_id "RvY_04461.1"; Scaffold002 rebuild transcript 3053205 3054138 . - . gene_id "RvY_04462"; transcript_id "RvY_04462.1"; gene_name "Lipocalin_2"; annotation "hypothetical protein."; Pfam "[Lipocalin_2] Lipocalin-like domain|[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; CDD "Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel."; Scaffold002 rebuild exon 3053205 3053362 . - . gene_id "RvY_04462"; transcript_id "RvY_04462.1"; Scaffold002 rebuild exon 3053445 3053487 . - . gene_id "RvY_04462"; transcript_id "RvY_04462.1"; Scaffold002 rebuild exon 3053569 3053713 . - . gene_id "RvY_04462"; transcript_id "RvY_04462.1"; Scaffold002 rebuild exon 3053779 3053906 . - . gene_id "RvY_04462"; transcript_id "RvY_04462.1"; Scaffold002 rebuild exon 3054004 3054138 . - . gene_id "RvY_04462"; transcript_id "RvY_04462.1"; Scaffold002 rebuild transcript 3059651 3060751 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; annotation "hypothetical protein."; Pfam "[Lipocalin_2] Lipocalin-like domain|[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; Scaffold002 rebuild exon 3059651 3059820 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; Scaffold002 rebuild exon 3059970 3060006 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; Scaffold002 rebuild exon 3060082 3060140 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; Scaffold002 rebuild exon 3060228 3060313 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; Scaffold002 rebuild exon 3060397 3060527 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; Scaffold002 rebuild exon 3060614 3060751 . - . gene_id "RvY_04463"; transcript_id "RvY_04463.1"; Scaffold002 rebuild transcript 3061516 3063288 . - . gene_id "RvY_04464"; transcript_id "RvY_04464.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 3061516 3062582 . - . gene_id "RvY_04464"; transcript_id "RvY_04464.1"; Scaffold002 rebuild exon 3062898 3063288 . - . gene_id "RvY_04464"; transcript_id "RvY_04464.1"; Scaffold002 rebuild transcript 3065820 3066203 . + . gene_id "RvY_04465"; transcript_id "RvY_04465.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3065820 3066203 . + . gene_id "RvY_04465"; transcript_id "RvY_04465.1"; Scaffold002 rebuild transcript 3066259 3067437 . + . gene_id "RvY_04466"; transcript_id "RvY_04466.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3066259 3066309 . + . gene_id "RvY_04466"; transcript_id "RvY_04466.1"; Scaffold002 rebuild exon 3066653 3066812 . + . gene_id "RvY_04466"; transcript_id "RvY_04466.1"; Scaffold002 rebuild exon 3067328 3067437 . + . gene_id "RvY_04466"; transcript_id "RvY_04466.1"; Scaffold002 rebuild transcript 3067689 3068705 . - . gene_id "RvY_04467"; transcript_id "RvY_04467.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold002 rebuild exon 3067689 3068705 . - . gene_id "RvY_04467"; transcript_id "RvY_04467.1"; Scaffold002 rebuild transcript 3068781 3069365 . - . gene_id "RvY_04468"; transcript_id "RvY_04468.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold002 rebuild exon 3068781 3068968 . - . gene_id "RvY_04468"; transcript_id "RvY_04468.1"; Scaffold002 rebuild exon 3069031 3069233 . - . gene_id "RvY_04468"; transcript_id "RvY_04468.1"; Scaffold002 rebuild exon 3069298 3069365 . - . gene_id "RvY_04468"; transcript_id "RvY_04468.1"; Scaffold002 rebuild transcript 3069892 3072300 . + . gene_id "RvY_04469"; transcript_id "RvY_04469.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3069892 3070072 . + . gene_id "RvY_04469"; transcript_id "RvY_04469.1"; Scaffold002 rebuild exon 3072110 3072300 . + . gene_id "RvY_04469"; transcript_id "RvY_04469.1"; Scaffold002 rebuild transcript 3072589 3073078 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3072589 3072796 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.1"; Scaffold002 rebuild exon 3072882 3073078 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.1"; Scaffold002 rebuild transcript 3072589 3073144 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3072589 3072796 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.2"; Scaffold002 rebuild exon 3072882 3072976 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.2"; Scaffold002 rebuild exon 3073079 3073144 . + . gene_id "RvY_04470"; transcript_id "RvY_04470.2"; Scaffold002 rebuild transcript 3073221 3073637 . + . gene_id "RvY_04471"; transcript_id "RvY_04471.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3073221 3073637 . + . gene_id "RvY_04471"; transcript_id "RvY_04471.1"; Scaffold002 rebuild transcript 3074545 3075780 . - . gene_id "RvY_04472"; transcript_id "RvY_04472.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3074545 3075780 . - . gene_id "RvY_04472"; transcript_id "RvY_04472.1"; Scaffold002 rebuild transcript 3076467 3076826 . - . gene_id "RvY_04473"; transcript_id "RvY_04473.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3076467 3076826 . - . gene_id "RvY_04473"; transcript_id "RvY_04473.1"; Scaffold002 rebuild transcript 3078098 3078517 . + . gene_id "RvY_04474"; transcript_id "RvY_04474.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3078098 3078517 . + . gene_id "RvY_04474"; transcript_id "RvY_04474.1"; Scaffold002 rebuild transcript 3078098 3078514 . + . gene_id "RvY_04474"; transcript_id "RvY_04474.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3078098 3078514 . + . gene_id "RvY_04474"; transcript_id "RvY_04474.2"; Scaffold002 rebuild transcript 3079047 3079486 . + . gene_id "RvY_04475"; transcript_id "RvY_04475.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3079047 3079061 . + . gene_id "RvY_04475"; transcript_id "RvY_04475.1"; Scaffold002 rebuild exon 3079157 3079486 . + . gene_id "RvY_04475"; transcript_id "RvY_04475.1"; Scaffold002 rebuild transcript 3079586 3080654 . + . gene_id "RvY_04476"; transcript_id "RvY_04476.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3079586 3079855 . + . gene_id "RvY_04476"; transcript_id "RvY_04476.1"; Scaffold002 rebuild exon 3080193 3080339 . + . gene_id "RvY_04476"; transcript_id "RvY_04476.1"; Scaffold002 rebuild exon 3080493 3080654 . + . gene_id "RvY_04476"; transcript_id "RvY_04476.1"; Scaffold002 rebuild transcript 3082376 3083612 . - . gene_id "RvY_04477"; transcript_id "RvY_04477.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3082376 3082537 . - . gene_id "RvY_04477"; transcript_id "RvY_04477.1"; Scaffold002 rebuild exon 3083442 3083612 . - . gene_id "RvY_04477"; transcript_id "RvY_04477.1"; Scaffold002 framed transcript 3082723 3083016 . + . gene_id "RvY_04478"; transcript_id "RvY_04478.1"; annotation "hypothetical protein."; Scaffold002 framed exon 3082723 3082917 . + . gene_id "RvY_04478"; transcript_id "RvY_04478.1"; Scaffold002 framed exon 3082993 3083016 . + . gene_id "RvY_04478"; transcript_id "RvY_04478.1"; Scaffold002 rebuild transcript 3084029 3084415 . - . gene_id "RvY_04479"; transcript_id "RvY_04479.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 3084029 3084415 . - . gene_id "RvY_04479"; transcript_id "RvY_04479.1"; Scaffold002 rebuild transcript 3084796 3085157 . + . gene_id "RvY_04480"; transcript_id "RvY_04480.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3084796 3085039 . + . gene_id "RvY_04480"; transcript_id "RvY_04480.1"; Scaffold002 rebuild exon 3085090 3085157 . + . gene_id "RvY_04480"; transcript_id "RvY_04480.1"; Scaffold002 rebuild transcript 3085216 3085398 . - . gene_id "RvY_04481"; transcript_id "RvY_04481.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3085216 3085398 . - . gene_id "RvY_04481"; transcript_id "RvY_04481.1"; Scaffold002 rebuild transcript 3085736 3086600 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.1"; gene_name "(1,2)PTZ00136"; annotation "hypothetical protein."; CDD "(1,2)eukaryotic translation initiation factor 6; Provisional"; Scaffold002 rebuild exon 3085736 3085897 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.1"; Scaffold002 rebuild exon 3086098 3086212 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.1"; Scaffold002 rebuild exon 3086303 3086385 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.1"; Scaffold002 rebuild exon 3086493 3086600 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.1"; Scaffold002 rebuild transcript 3085736 3086600 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.2"; gene_name "(1,2)PTZ00136"; annotation "hypothetical protein."; CDD "(1,2)eukaryotic translation initiation factor 6; Provisional"; Scaffold002 rebuild exon 3085736 3085897 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.2"; Scaffold002 rebuild exon 3086098 3086212 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.2"; Scaffold002 rebuild exon 3086303 3086385 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.2"; Scaffold002 rebuild exon 3086493 3086515 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.2"; Scaffold002 rebuild exon 3086579 3086600 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.2"; Scaffold002 rebuild transcript 3086068 3086600 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.3"; gene_name "(1,2)PTZ00136"; annotation "hypothetical protein."; CDD "(1,2)eukaryotic translation initiation factor 6; Provisional"; Scaffold002 rebuild exon 3086068 3086212 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.3"; Scaffold002 rebuild exon 3086303 3086385 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.3"; Scaffold002 rebuild exon 3086493 3086600 . - . gene_id "RvY_04482"; transcript_id "RvY_04482.3"; Scaffold002 rebuild transcript 3088248 3088487 . + . gene_id "RvY_04483"; transcript_id "RvY_04483.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3088248 3088487 . + . gene_id "RvY_04483"; transcript_id "RvY_04483.1"; Scaffold002 rebuild transcript 3092156 3092548 . - . gene_id "RvY_04484"; transcript_id "RvY_04484.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3092156 3092548 . - . gene_id "RvY_04484"; transcript_id "RvY_04484.1"; Scaffold002 rebuild transcript 3096241 3097851 . + . gene_id "RvY_04485"; transcript_id "RvY_04485.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold002 rebuild exon 3096241 3097423 . + . gene_id "RvY_04485"; transcript_id "RvY_04485.1"; Scaffold002 rebuild exon 3097491 3097549 . + . gene_id "RvY_04485"; transcript_id "RvY_04485.1"; Scaffold002 rebuild exon 3097632 3097687 . + . gene_id "RvY_04485"; transcript_id "RvY_04485.1"; Scaffold002 rebuild exon 3097782 3097851 . + . gene_id "RvY_04485"; transcript_id "RvY_04485.1"; Scaffold002 rebuild transcript 3098699 3099763 . + . gene_id "RvY_04486"; transcript_id "RvY_04486.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 3098699 3099763 . + . gene_id "RvY_04486"; transcript_id "RvY_04486.1"; Scaffold002 rebuild transcript 3099538 3099735 . - . gene_id "RvY_04487"; transcript_id "RvY_04487.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3099538 3099735 . - . gene_id "RvY_04487"; transcript_id "RvY_04487.1"; Scaffold002 rebuild transcript 3101447 3102736 . + . gene_id "RvY_04488"; transcript_id "RvY_04488.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3101447 3101500 . + . gene_id "RvY_04488"; transcript_id "RvY_04488.1"; Scaffold002 rebuild exon 3102251 3102332 . + . gene_id "RvY_04488"; transcript_id "RvY_04488.1"; Scaffold002 rebuild exon 3102498 3102736 . + . gene_id "RvY_04488"; transcript_id "RvY_04488.1"; Scaffold002 rebuild transcript 3102651 3104127 . - . gene_id "RvY_04489"; transcript_id "RvY_04489.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3102651 3103030 . - . gene_id "RvY_04489"; transcript_id "RvY_04489.1"; Scaffold002 rebuild exon 3103311 3104127 . - . gene_id "RvY_04489"; transcript_id "RvY_04489.1"; Scaffold002 rebuild transcript 3104933 3105384 . - . gene_id "RvY_04490"; transcript_id "RvY_04490.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3104933 3104978 . - . gene_id "RvY_04490"; transcript_id "RvY_04490.1"; Scaffold002 rebuild exon 3105008 3105384 . - . gene_id "RvY_04490"; transcript_id "RvY_04490.1"; Scaffold002 rebuild transcript 3105844 3106050 . + . gene_id "RvY_04491"; transcript_id "RvY_04491.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3105844 3106050 . + . gene_id "RvY_04491"; transcript_id "RvY_04491.1"; Scaffold002 rebuild transcript 3107202 3108624 . - . gene_id "RvY_04492"; transcript_id "RvY_04492.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3107202 3107554 . - . gene_id "RvY_04492"; transcript_id "RvY_04492.1"; Scaffold002 rebuild exon 3107922 3108624 . - . gene_id "RvY_04492"; transcript_id "RvY_04492.1"; Scaffold002 rebuild transcript 3109606 3112140 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; gene_name "POLL"; annotation "DNA polymerase lambda subunit [EC:2.7.7.7 4.2.99.-]"; Pfam "[DNA_pol_lambd_f] Fingers domain of DNA polymerase lambda|[BRCT] BRCA1 C Terminus (BRCT) domain"; CDD "Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this family."; EC "EC2.7.7.7|EC4.2.99.-"; KO "K03512"; Scaffold002 rebuild exon 3109606 3110115 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3110346 3110561 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3110638 3110826 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3110886 3111065 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3111262 3111559 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3111630 3111715 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3111795 3111956 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild exon 3112033 3112140 . + . gene_id "RvY_04493"; transcript_id "RvY_04493.1"; Scaffold002 rebuild transcript 3112592 3133772 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3112592 3113382 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3113522 3114160 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3114255 3114416 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3114611 3114965 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3115242 3115390 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3115506 3115783 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3115919 3116258 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3116467 3116590 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3126261 3126587 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3129401 3129712 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild exon 3133377 3133772 . - . gene_id "RvY_04494"; transcript_id "RvY_04494.1"; Scaffold002 rebuild transcript 3115249 3115416 . + . gene_id "RvY_04495"; transcript_id "RvY_04495.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3115249 3115416 . + . gene_id "RvY_04495"; transcript_id "RvY_04495.1"; Scaffold002 rebuild transcript 3130715 3131131 . + . gene_id "RvY_04496"; transcript_id "RvY_04496.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3130715 3131131 . + . gene_id "RvY_04496"; transcript_id "RvY_04496.1"; Scaffold002 rebuild transcript 3137388 3141967 . + . gene_id "RvY_04497"; transcript_id "RvY_04497.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3137388 3140517 . + . gene_id "RvY_04497"; transcript_id "RvY_04497.1"; Scaffold002 rebuild exon 3140580 3140722 . + . gene_id "RvY_04497"; transcript_id "RvY_04497.1"; Scaffold002 rebuild exon 3141273 3141521 . + . gene_id "RvY_04497"; transcript_id "RvY_04497.1"; Scaffold002 rebuild exon 3141593 3141967 . + . gene_id "RvY_04497"; transcript_id "RvY_04497.1"; Scaffold002 rebuild transcript 3143375 3143599 . - . gene_id "RvY_04498"; transcript_id "RvY_04498.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3143375 3143599 . - . gene_id "RvY_04498"; transcript_id "RvY_04498.1"; Scaffold002 rebuild transcript 3144608 3145104 . + . gene_id "RvY_04499"; transcript_id "RvY_04499.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3144608 3144634 . + . gene_id "RvY_04499"; transcript_id "RvY_04499.1"; Scaffold002 rebuild exon 3144952 3145104 . + . gene_id "RvY_04499"; transcript_id "RvY_04499.1"; Scaffold002 rebuild transcript 3154006 3154281 . + . gene_id "RvY_04500"; transcript_id "RvY_04500.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3154006 3154281 . + . gene_id "RvY_04500"; transcript_id "RvY_04500.1"; Scaffold002 rebuild transcript 3156204 3157096 . - . gene_id "RvY_04501"; transcript_id "RvY_04501.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3156204 3156430 . - . gene_id "RvY_04501"; transcript_id "RvY_04501.1"; Scaffold002 rebuild exon 3156949 3157096 . - . gene_id "RvY_04501"; transcript_id "RvY_04501.1"; Scaffold002 rebuild transcript 3169495 3170535 . - . gene_id "RvY_04502"; transcript_id "RvY_04502.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3169495 3169712 . - . gene_id "RvY_04502"; transcript_id "RvY_04502.1"; Scaffold002 rebuild exon 3170361 3170535 . - . gene_id "RvY_04502"; transcript_id "RvY_04502.1"; Scaffold002 rebuild transcript 3170522 3171229 . + . gene_id "RvY_04503"; transcript_id "RvY_04503.1"; annotation "hypothetical protein."; Pfam "[Acetyltransf_10] Acetyltransferase (GNAT) domain|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; EC "EC2.3.1.-"; similar_genes "NAT13_BOVIN(e-value:1.1e-18;bit-score:91.0)"; Scaffold002 rebuild exon 3170522 3171229 . + . gene_id "RvY_04503"; transcript_id "RvY_04503.1"; Scaffold002 rebuild transcript 3172541 3176956 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; gene_name "STK32"; annotation "serine/threonine kinase 32 [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_Yank1: Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A."; EC "EC2.7.11.1"; KO "K08793"; similar_genes "ST32B_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold002 rebuild exon 3172541 3172696 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3172766 3172891 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3173015 3173131 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3173196 3173299 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3173386 3173463 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3173588 3173643 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3173722 3173882 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3173968 3174023 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3174084 3174192 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3175933 3175988 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild exon 3176902 3176956 . - . gene_id "RvY_04504"; transcript_id "RvY_04504.1"; Scaffold002 rebuild transcript 3181167 3183324 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; gene_name "HTRA2"; annotation "HtrA serine peptidase 2 [EC:3.4.21.108]"; Pfam "[PDZ_2] PDZ domain|[Peptidase_S46] Peptidase S46|[Trypsin_2] Trypsin-like peptidase domain|[PDZ] PDZ domain (Also known as DHR or GLGF)|[Trypsin]"; CDD "periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures."; EC "EC3.4.21.108"; KO "K08669"; similar_genes "HTRA2_BOVIN(e-value:4.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 3181167 3181335 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3181401 3181602 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3181665 3181760 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3181884 3181932 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3181994 3182103 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3182210 3182315 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3182393 3182518 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3182791 3182863 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild exon 3182933 3183324 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.1"; Scaffold002 rebuild transcript 3181167 3183299 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; gene_name "HTRA2"; annotation "HtrA serine peptidase 2 [EC:3.4.21.108]"; Pfam "[PDZ_2] PDZ domain|[Peptidase_S46] Peptidase S46|[Trypsin_2] Trypsin-like peptidase domain|[PDZ] PDZ domain (Also known as DHR or GLGF)|[Trypsin]"; CDD "periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures."; EC "EC3.4.21.108"; KO "K08669"; similar_genes "HTRA2_BOVIN(e-value:4.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 3181167 3181335 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3181401 3181602 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3181665 3181760 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3181884 3181932 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3181994 3182103 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3182210 3182315 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3182393 3182518 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3182791 3182863 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3182933 3183173 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild exon 3183260 3183299 . - . gene_id "RvY_04505"; transcript_id "RvY_04505.2"; Scaffold002 rebuild transcript 3183560 3183892 . + . gene_id "RvY_04506"; transcript_id "RvY_04506.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3183560 3183892 . + . gene_id "RvY_04506"; transcript_id "RvY_04506.1"; Scaffold002 rebuild transcript 3184069 3186334 . - . gene_id "RvY_04507"; transcript_id "RvY_04507.1"; gene_name "ADARB1"; annotation "double stranded RNA-specific editase 1 [EC:3.5.-.-]"; Pfam "[A_deamin] Adenosine-deaminase (editase) domain"; CDD "tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)."; EC "EC3.5.-.-"; KO "K13194"; similar_genes "ADAR_DROME(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 3184069 3184509 . - . gene_id "RvY_04507"; transcript_id "RvY_04507.1"; Scaffold002 rebuild exon 3184623 3185216 . - . gene_id "RvY_04507"; transcript_id "RvY_04507.1"; Scaffold002 rebuild exon 3185372 3186334 . - . gene_id "RvY_04507"; transcript_id "RvY_04507.1"; Scaffold002 rebuild transcript 3186831 3190127 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; gene_name "PRMT5"; annotation "protein arginine N-methyltransferase 5 [EC:2.1.1.125]"; Pfam "[PRMT5] PRMT5 arginine-N-methyltransferase"; EC "EC2.1.1.-|EC2.1.1.125"; KO "K02516"; similar_genes "ANM5_DROME(e-value:1.4e-14;bit-score:78.0)"; Scaffold002 rebuild exon 3186831 3187196 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; Scaffold002 rebuild exon 3187263 3187538 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; Scaffold002 rebuild exon 3187702 3187811 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; Scaffold002 rebuild exon 3188050 3188743 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; Scaffold002 rebuild exon 3188925 3189342 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; Scaffold002 rebuild exon 3189793 3190127 . + . gene_id "RvY_04508"; transcript_id "RvY_04508.1"; Scaffold002 rebuild transcript 3191748 3194990 . + . gene_id "RvY_04509"; transcript_id "RvY_04509.1"; gene_name "K00654"; annotation "Serine palmitoyltransferase 2"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life."; EC "EC2.3.1.50"; KO "K00654"; similar_genes "SPTC2_DICDI(e-value:1.7e-106;bit-score:383.0)"; Scaffold002 rebuild exon 3191748 3192217 . + . gene_id "RvY_04509"; transcript_id "RvY_04509.1"; Scaffold002 rebuild exon 3192400 3192703 . + . gene_id "RvY_04509"; transcript_id "RvY_04509.1"; Scaffold002 rebuild exon 3192848 3193216 . + . gene_id "RvY_04509"; transcript_id "RvY_04509.1"; Scaffold002 rebuild exon 3193952 3194364 . + . gene_id "RvY_04509"; transcript_id "RvY_04509.1"; Scaffold002 rebuild exon 3194639 3194990 . + . gene_id "RvY_04509"; transcript_id "RvY_04509.1"; Scaffold002 rebuild transcript 3195641 3198247 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; gene_name "LIC"; annotation "Acetylcholine receptor subunit alpha-like 1"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "ACH1_DROME(e-value:5.7e-56;bit-score:215.0)"; Scaffold002 rebuild exon 3195641 3195847 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3196292 3196336 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3196429 3196538 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3196640 3196790 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3196857 3197094 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3197159 3197238 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3197298 3197357 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3197416 3197526 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3197587 3197949 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild exon 3198020 3198247 . + . gene_id "RvY_04510"; transcript_id "RvY_04510.1"; Scaffold002 rebuild transcript 3202710 3205171 . - . gene_id "RvY_04511"; transcript_id "RvY_04511.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_1_like] MFS_1 like family"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 3202710 3203071 . - . gene_id "RvY_04511"; transcript_id "RvY_04511.1"; Scaffold002 rebuild exon 3203306 3203393 . - . gene_id "RvY_04511"; transcript_id "RvY_04511.1"; Scaffold002 rebuild exon 3203498 3203612 . - . gene_id "RvY_04511"; transcript_id "RvY_04511.1"; Scaffold002 rebuild exon 3203700 3203840 . - . gene_id "RvY_04511"; transcript_id "RvY_04511.1"; Scaffold002 rebuild exon 3203901 3205171 . - . gene_id "RvY_04511"; transcript_id "RvY_04511.1"; Scaffold002 rebuild transcript 3206291 3207021 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3206291 3206342 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.1"; Scaffold002 rebuild exon 3206582 3206718 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.1"; Scaffold002 rebuild exon 3206789 3206833 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.1"; Scaffold002 rebuild exon 3206923 3207021 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.1"; Scaffold002 rebuild transcript 3206578 3207080 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3206578 3206718 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.2"; Scaffold002 rebuild exon 3206789 3206833 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.2"; Scaffold002 rebuild exon 3206955 3207080 . - . gene_id "RvY_04512"; transcript_id "RvY_04512.2"; Scaffold002 rebuild transcript 3208498 3208854 . - . gene_id "RvY_04513"; transcript_id "RvY_04513.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3208498 3208854 . - . gene_id "RvY_04513"; transcript_id "RvY_04513.1"; Scaffold002 rebuild transcript 3209073 3211139 . - . gene_id "RvY_04514"; transcript_id "RvY_04514.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 3209073 3209836 . - . gene_id "RvY_04514"; transcript_id "RvY_04514.1"; Scaffold002 rebuild exon 3209926 3210814 . - . gene_id "RvY_04514"; transcript_id "RvY_04514.1"; Scaffold002 rebuild exon 3210900 3211139 . - . gene_id "RvY_04514"; transcript_id "RvY_04514.1"; Scaffold002 rebuild transcript 3211143 3211490 . - . gene_id "RvY_04515"; transcript_id "RvY_04515.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3211143 3211490 . - . gene_id "RvY_04515"; transcript_id "RvY_04515.1"; Scaffold002 rebuild transcript 3213403 3213600 . + . gene_id "RvY_04516"; transcript_id "RvY_04516.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3213403 3213600 . + . gene_id "RvY_04516"; transcript_id "RvY_04516.1"; Scaffold002 rebuild transcript 3213601 3214386 . + . gene_id "RvY_04517"; transcript_id "RvY_04517.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3213601 3213855 . + . gene_id "RvY_04517"; transcript_id "RvY_04517.1"; Scaffold002 rebuild exon 3213934 3214064 . + . gene_id "RvY_04517"; transcript_id "RvY_04517.1"; Scaffold002 rebuild exon 3214212 3214386 . + . gene_id "RvY_04517"; transcript_id "RvY_04517.1"; Scaffold002 rebuild transcript 3214666 3216081 . - . gene_id "RvY_04518"; transcript_id "RvY_04518.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3214666 3214934 . - . gene_id "RvY_04518"; transcript_id "RvY_04518.1"; Scaffold002 rebuild exon 3215628 3216081 . - . gene_id "RvY_04518"; transcript_id "RvY_04518.1"; Scaffold002 rebuild transcript 3219872 3222104 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; annotation "hypothetical protein."; Pfam "[A_deamin] Adenosine-deaminase (editase) domain"; EC "EC3.5.4.-"; KO "(1)K15440"; similar_genes "ADAT1_XENTR(e-value:2.5e-18;bit-score:90.0)"; Scaffold002 rebuild exon 3219872 3220287 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; Scaffold002 rebuild exon 3220482 3220612 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; Scaffold002 rebuild exon 3220698 3221088 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; Scaffold002 rebuild exon 3221291 3221475 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; Scaffold002 rebuild exon 3221571 3221673 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; Scaffold002 rebuild exon 3221807 3222104 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.1"; Scaffold002 rebuild transcript 3219872 3221263 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.2"; annotation "hypothetical protein."; Pfam "[A_deamin] Adenosine-deaminase (editase) domain"; EC "EC3.5.4.-"; KO "(1)K15440"; similar_genes "ADAT1_XENTR(e-value:2.5e-18;bit-score:90.0)"; Scaffold002 rebuild exon 3219872 3220287 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.2"; Scaffold002 rebuild exon 3220482 3220612 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.2"; Scaffold002 rebuild exon 3220698 3221263 . + . gene_id "RvY_04519"; transcript_id "RvY_04519.2"; Scaffold002 rebuild transcript 3222165 3222687 . - . gene_id "RvY_04520"; transcript_id "RvY_04520.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3222165 3222398 . - . gene_id "RvY_04520"; transcript_id "RvY_04520.1"; Scaffold002 rebuild exon 3222667 3222687 . - . gene_id "RvY_04520"; transcript_id "RvY_04520.1"; Scaffold002 rebuild transcript 3227900 3228948 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 3227900 3228058 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.1"; Scaffold002 rebuild exon 3228115 3228368 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.1"; Scaffold002 rebuild exon 3228426 3228518 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.1"; Scaffold002 rebuild exon 3228582 3228948 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.1"; Scaffold002 rebuild transcript 3227427 3227960 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 3227427 3227960 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.2"; Scaffold002 rebuild transcript 3227900 3228522 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.3"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 3227900 3228058 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.3"; Scaffold002 rebuild exon 3228115 3228368 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.3"; Scaffold002 rebuild exon 3228426 3228522 . + . gene_id "RvY_04521"; transcript_id "RvY_04521.3"; Scaffold002 rebuild transcript 3229065 3231179 . - . gene_id "RvY_04522"; transcript_id "RvY_04522.1"; annotation "hypothetical protein."; EC "EC4.2.1.1"; similar_genes "MA66_PINMA(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 3229065 3229234 . - . gene_id "RvY_04522"; transcript_id "RvY_04522.1"; Scaffold002 rebuild exon 3230248 3230594 . - . gene_id "RvY_04522"; transcript_id "RvY_04522.1"; Scaffold002 rebuild exon 3230632 3231179 . - . gene_id "RvY_04522"; transcript_id "RvY_04522.1"; Scaffold002 rebuild transcript 3233222 3234078 . + . gene_id "RvY_04523"; transcript_id "RvY_04523.1"; gene_name "ARD"; annotation "hypothetical protein."; Pfam "[ARD] ARD/ARD' family"; CDD "ARD/ARD' family. The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels. This family also contains other members, whose functions are not well characterized."; Scaffold002 rebuild exon 3233222 3233368 . + . gene_id "RvY_04523"; transcript_id "RvY_04523.1"; Scaffold002 rebuild exon 3233435 3233560 . + . gene_id "RvY_04523"; transcript_id "RvY_04523.1"; Scaffold002 rebuild exon 3233652 3233802 . + . gene_id "RvY_04523"; transcript_id "RvY_04523.1"; Scaffold002 rebuild exon 3233870 3234078 . + . gene_id "RvY_04523"; transcript_id "RvY_04523.1"; Scaffold002 rebuild transcript 3234833 3237676 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; gene_name "aslA"; annotation "arylsulfatase [EC:3.1.6.1]"; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.-|EC3.1.6.1"; KO "K01130"; similar_genes "ARSJ_HUMAN(e-value:5.9e-09;bit-score:59.0)"; Scaffold002 rebuild exon 3234833 3234920 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3234993 3235114 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3235174 3235345 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3235445 3235589 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3235659 3235698 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3235761 3236455 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3236543 3236579 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3236645 3236757 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3236826 3236925 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3237000 3237062 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild exon 3237188 3237676 . - . gene_id "RvY_04524"; transcript_id "RvY_04524.1"; Scaffold002 rebuild transcript 3238646 3239116 . + . gene_id "RvY_04525"; transcript_id "RvY_04525.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)|[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:1.0e-23;bit-score:108.0)"; Scaffold002 rebuild exon 3238646 3239116 . + . gene_id "RvY_04525"; transcript_id "RvY_04525.1"; Scaffold002 rebuild transcript 3243183 3243698 . + . gene_id "RvY_04526"; transcript_id "RvY_04526.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3243183 3243698 . + . gene_id "RvY_04526"; transcript_id "RvY_04526.1"; Scaffold002 rebuild transcript 3244162 3244866 . + . gene_id "RvY_04527"; transcript_id "RvY_04527.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3244162 3244866 . + . gene_id "RvY_04527"; transcript_id "RvY_04527.1"; Scaffold002 rebuild transcript 3246422 3250118 . - . gene_id "RvY_04528"; transcript_id "RvY_04528.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3246422 3246475 . - . gene_id "RvY_04528"; transcript_id "RvY_04528.1"; Scaffold002 rebuild exon 3246766 3246882 . - . gene_id "RvY_04528"; transcript_id "RvY_04528.1"; Scaffold002 rebuild exon 3247758 3247942 . - . gene_id "RvY_04528"; transcript_id "RvY_04528.1"; Scaffold002 rebuild exon 3250040 3250118 . - . gene_id "RvY_04528"; transcript_id "RvY_04528.1"; Scaffold002 rebuild transcript 3247728 3247913 . + . gene_id "RvY_04529"; transcript_id "RvY_04529.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3247728 3247913 . + . gene_id "RvY_04529"; transcript_id "RvY_04529.1"; Scaffold002 rebuild transcript 3251207 3251971 . + . gene_id "RvY_04530"; transcript_id "RvY_04530.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3251207 3251449 . + . gene_id "RvY_04530"; transcript_id "RvY_04530.1"; Scaffold002 rebuild exon 3251508 3251601 . + . gene_id "RvY_04530"; transcript_id "RvY_04530.1"; Scaffold002 rebuild exon 3251682 3251971 . + . gene_id "RvY_04530"; transcript_id "RvY_04530.1"; Scaffold002 rebuild transcript 3255657 3256064 . - . gene_id "RvY_04531"; transcript_id "RvY_04531.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3255657 3256064 . - . gene_id "RvY_04531"; transcript_id "RvY_04531.1"; Scaffold002 rebuild transcript 3258303 3258578 . - . gene_id "RvY_04532"; transcript_id "RvY_04532.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3258303 3258578 . - . gene_id "RvY_04532"; transcript_id "RvY_04532.1"; Scaffold002 rebuild transcript 3259305 3260520 . - . gene_id "RvY_04533"; transcript_id "RvY_04533.1"; annotation "hypothetical protein."; Pfam "[DUF21] Domain of unknown function DUF21"; similar_genes "CNNM4_XENTR(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 3259305 3259571 . - . gene_id "RvY_04533"; transcript_id "RvY_04533.1"; Scaffold002 rebuild exon 3260503 3260520 . - . gene_id "RvY_04533"; transcript_id "RvY_04533.1"; Scaffold002 rebuild transcript 3260592 3260993 . - . gene_id "RvY_04534"; transcript_id "RvY_04534.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3260592 3260993 . - . gene_id "RvY_04534"; transcript_id "RvY_04534.1"; Scaffold002 rebuild transcript 3262931 3263767 . - . gene_id "RvY_04535"; transcript_id "RvY_04535.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3262931 3263131 . - . gene_id "RvY_04535"; transcript_id "RvY_04535.1"; Scaffold002 rebuild exon 3263630 3263767 . - . gene_id "RvY_04535"; transcript_id "RvY_04535.1"; Scaffold002 rebuild transcript 3265560 3265931 . - . gene_id "RvY_04536"; transcript_id "RvY_04536.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3265560 3265931 . - . gene_id "RvY_04536"; transcript_id "RvY_04536.1"; Scaffold002 rebuild transcript 3266355 3266675 . - . gene_id "RvY_04537"; transcript_id "RvY_04537.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3266355 3266590 . - . gene_id "RvY_04537"; transcript_id "RvY_04537.1"; Scaffold002 rebuild exon 3266669 3266675 . - . gene_id "RvY_04537"; transcript_id "RvY_04537.1"; Scaffold002 rebuild transcript 3266679 3267305 . - . gene_id "RvY_04538"; transcript_id "RvY_04538.1"; annotation "hypothetical protein."; Pfam "[FLYWCH] FLYWCH zinc finger domain"; Scaffold002 rebuild exon 3266679 3267305 . - . gene_id "RvY_04538"; transcript_id "RvY_04538.1"; Scaffold002 rebuild transcript 3277176 3279164 . - . gene_id "RvY_04539"; transcript_id "RvY_04539.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3277176 3278077 . - . gene_id "RvY_04539"; transcript_id "RvY_04539.1"; Scaffold002 rebuild exon 3279089 3279164 . - . gene_id "RvY_04539"; transcript_id "RvY_04539.1"; Scaffold002 rebuild transcript 3281100 3281698 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3281100 3281283 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.1"; Scaffold002 rebuild exon 3281354 3281397 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.1"; Scaffold002 rebuild exon 3281466 3281528 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.1"; Scaffold002 rebuild exon 3281594 3281698 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.1"; Scaffold002 rebuild transcript 3281350 3281876 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3281350 3281397 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.2"; Scaffold002 rebuild exon 3281466 3281528 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.2"; Scaffold002 rebuild exon 3281594 3281698 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.2"; Scaffold002 rebuild exon 3281781 3281876 . - . gene_id "RvY_04540"; transcript_id "RvY_04540.2"; Scaffold002 rebuild transcript 3286521 3288107 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; gene_name "K06997"; annotation "putative Proline synthetase co-transcribed bacterial homolog protein"; Pfam "[Ala_racemase_N] Alanine racemase, N-terminal domain"; CDD "Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)."; KO "K06997"; similar_genes "PROSC_MOUSE(e-value:2.9e-38;bit-score:156.0)"; Scaffold002 rebuild exon 3286521 3286646 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; Scaffold002 rebuild exon 3286709 3286801 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; Scaffold002 rebuild exon 3287128 3287239 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; Scaffold002 rebuild exon 3287328 3287462 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; Scaffold002 rebuild exon 3287559 3287704 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; Scaffold002 rebuild exon 3287853 3288107 . + . gene_id "RvY_04541"; transcript_id "RvY_04541.1"; Scaffold002 rebuild transcript 3288573 3289644 . - . gene_id "RvY_04542"; transcript_id "RvY_04542.1"; annotation "hypothetical protein."; Pfam "[Erf4] Golgin subfamily A member 7/ERF4 family"; Scaffold002 rebuild exon 3288573 3288593 . - . gene_id "RvY_04542"; transcript_id "RvY_04542.1"; Scaffold002 rebuild exon 3288671 3288769 . - . gene_id "RvY_04542"; transcript_id "RvY_04542.1"; Scaffold002 rebuild exon 3288826 3288978 . - . gene_id "RvY_04542"; transcript_id "RvY_04542.1"; Scaffold002 rebuild exon 3289413 3289565 . - . gene_id "RvY_04542"; transcript_id "RvY_04542.1"; Scaffold002 rebuild exon 3289633 3289644 . - . gene_id "RvY_04542"; transcript_id "RvY_04542.1"; Scaffold002 rebuild transcript 3290308 3292012 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; annotation "hypothetical protein."; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; Scaffold002 rebuild exon 3290308 3290561 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild exon 3290618 3290688 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild exon 3290746 3290881 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild exon 3291045 3291255 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild exon 3291326 3291448 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild exon 3291623 3291763 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild exon 3291845 3292012 . + . gene_id "RvY_04543"; transcript_id "RvY_04543.1"; Scaffold002 rebuild transcript 3293078 3295664 . + . gene_id "RvY_04544"; transcript_id "RvY_04544.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 3293078 3293267 . + . gene_id "RvY_04544"; transcript_id "RvY_04544.1"; Scaffold002 rebuild exon 3293622 3293763 . + . gene_id "RvY_04544"; transcript_id "RvY_04544.1"; Scaffold002 rebuild exon 3293842 3294056 . + . gene_id "RvY_04544"; transcript_id "RvY_04544.1"; Scaffold002 rebuild exon 3294471 3294704 . + . gene_id "RvY_04544"; transcript_id "RvY_04544.1"; Scaffold002 rebuild exon 3294805 3295664 . + . gene_id "RvY_04544"; transcript_id "RvY_04544.1"; Scaffold002 rebuild transcript 3296140 3298160 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.1"; annotation "hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; similar_genes "CES2_CAEEL(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 3296140 3296504 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.1"; Scaffold002 rebuild exon 3296827 3297123 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.1"; Scaffold002 rebuild exon 3298121 3298160 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.1"; Scaffold002 rebuild transcript 3296140 3297154 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.2"; annotation "hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; similar_genes "CES2_CAEEL(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 3296140 3296504 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.2"; Scaffold002 rebuild exon 3296827 3297154 . - . gene_id "RvY_04545"; transcript_id "RvY_04545.2"; Scaffold002 rebuild transcript 3302186 3302785 . - . gene_id "RvY_04546"; transcript_id "RvY_04546.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3302186 3302785 . - . gene_id "RvY_04546"; transcript_id "RvY_04546.1"; Scaffold002 rebuild transcript 3304945 3305474 . - . gene_id "RvY_04547"; transcript_id "RvY_04547.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3304945 3305268 . - . gene_id "RvY_04547"; transcript_id "RvY_04547.1"; Scaffold002 rebuild exon 3305361 3305474 . - . gene_id "RvY_04547"; transcript_id "RvY_04547.1"; Scaffold002 rebuild transcript 3308262 3308585 . - . gene_id "RvY_04548"; transcript_id "RvY_04548.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3308262 3308349 . - . gene_id "RvY_04548"; transcript_id "RvY_04548.1"; Scaffold002 rebuild exon 3308485 3308585 . - . gene_id "RvY_04548"; transcript_id "RvY_04548.1"; Scaffold002 rebuild transcript 3309510 3313167 . + . gene_id "RvY_04549"; transcript_id "RvY_04549.1"; gene_name "CHD"; annotation "hypothetical protein."; Pfam "[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide."; Scaffold002 rebuild exon 3309510 3309772 . + . gene_id "RvY_04549"; transcript_id "RvY_04549.1"; Scaffold002 rebuild exon 3311267 3311507 . + . gene_id "RvY_04549"; transcript_id "RvY_04549.1"; Scaffold002 rebuild exon 3311581 3312284 . + . gene_id "RvY_04549"; transcript_id "RvY_04549.1"; Scaffold002 rebuild exon 3312999 3313167 . + . gene_id "RvY_04549"; transcript_id "RvY_04549.1"; Scaffold002 rebuild transcript 3313594 3315578 . - . gene_id "RvY_04550"; transcript_id "RvY_04550.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold002 rebuild exon 3313594 3313847 . - . gene_id "RvY_04550"; transcript_id "RvY_04550.1"; Scaffold002 rebuild exon 3313936 3314583 . - . gene_id "RvY_04550"; transcript_id "RvY_04550.1"; Scaffold002 rebuild exon 3314703 3314846 . - . gene_id "RvY_04550"; transcript_id "RvY_04550.1"; Scaffold002 rebuild exon 3315215 3315578 . - . gene_id "RvY_04550"; transcript_id "RvY_04550.1"; Scaffold002 rebuild transcript 3315940 3316728 . + . gene_id "RvY_04551"; transcript_id "RvY_04551.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3315940 3316001 . + . gene_id "RvY_04551"; transcript_id "RvY_04551.1"; Scaffold002 rebuild exon 3316545 3316728 . + . gene_id "RvY_04551"; transcript_id "RvY_04551.1"; Scaffold002 rebuild transcript 3320637 3320825 . + . gene_id "RvY_04552"; transcript_id "RvY_04552.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3320637 3320825 . + . gene_id "RvY_04552"; transcript_id "RvY_04552.1"; Scaffold002 rebuild transcript 3322085 3322863 . + . gene_id "RvY_04553"; transcript_id "RvY_04553.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3322085 3322127 . + . gene_id "RvY_04553"; transcript_id "RvY_04553.1"; Scaffold002 rebuild exon 3322200 3322432 . + . gene_id "RvY_04553"; transcript_id "RvY_04553.1"; Scaffold002 rebuild exon 3322652 3322694 . + . gene_id "RvY_04553"; transcript_id "RvY_04553.1"; Scaffold002 rebuild exon 3322763 3322863 . + . gene_id "RvY_04553"; transcript_id "RvY_04553.1"; Scaffold002 rebuild transcript 3323004 3323324 . + . gene_id "RvY_04554"; transcript_id "RvY_04554.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 3323004 3323324 . + . gene_id "RvY_04554"; transcript_id "RvY_04554.1"; Scaffold002 rebuild transcript 3324799 3325360 . + . gene_id "RvY_04555"; transcript_id "RvY_04555.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3324799 3324958 . + . gene_id "RvY_04555"; transcript_id "RvY_04555.1"; Scaffold002 rebuild exon 3325011 3325360 . + . gene_id "RvY_04555"; transcript_id "RvY_04555.1"; Scaffold002 rebuild transcript 3326384 3331265 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; gene_name "RHD-n_TonEBP"; annotation "hypothetical protein."; Pfam "[RHD] Rel homology domain (RHD)"; CDD "N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt."; similar_genes "NFAC4_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold002 rebuild exon 3326384 3326736 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3328351 3328442 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3328626 3328696 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3328771 3328973 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3329039 3329232 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3330242 3330382 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3330447 3330514 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild exon 3330582 3331265 . + . gene_id "RvY_04556"; transcript_id "RvY_04556.1"; Scaffold002 rebuild transcript 3332489 3334360 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 3332489 3332865 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.1"; Scaffold002 rebuild exon 3332926 3333200 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.1"; Scaffold002 rebuild exon 3333290 3333369 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.1"; Scaffold002 rebuild exon 3333439 3334163 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.1"; Scaffold002 rebuild exon 3334249 3334360 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.1"; Scaffold002 rebuild transcript 3333280 3334360 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "(1)Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 3333280 3333369 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.2"; Scaffold002 rebuild exon 3333439 3334163 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.2"; Scaffold002 rebuild exon 3334249 3334360 . - . gene_id "RvY_04557"; transcript_id "RvY_04557.2"; Scaffold002 rebuild transcript 3334955 3337929 . - . gene_id "RvY_04558"; transcript_id "RvY_04558.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 3334955 3335160 . - . gene_id "RvY_04558"; transcript_id "RvY_04558.1"; Scaffold002 rebuild exon 3336086 3336251 . - . gene_id "RvY_04558"; transcript_id "RvY_04558.1"; Scaffold002 rebuild exon 3337843 3337929 . - . gene_id "RvY_04558"; transcript_id "RvY_04558.1"; Scaffold002 rebuild transcript 3340069 3341457 . + . gene_id "RvY_04559"; transcript_id "RvY_04559.1"; gene_name "MADF"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; CDD "subfamily of SANT domain."; Scaffold002 rebuild exon 3340069 3340288 . + . gene_id "RvY_04559"; transcript_id "RvY_04559.1"; Scaffold002 rebuild exon 3340356 3340494 . + . gene_id "RvY_04559"; transcript_id "RvY_04559.1"; Scaffold002 rebuild exon 3340780 3341066 . + . gene_id "RvY_04559"; transcript_id "RvY_04559.1"; Scaffold002 rebuild exon 3341135 3341297 . + . gene_id "RvY_04559"; transcript_id "RvY_04559.1"; Scaffold002 rebuild exon 3341382 3341457 . + . gene_id "RvY_04559"; transcript_id "RvY_04559.1"; Scaffold002 rebuild transcript 3341691 3344303 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PXDNL_HUMAN(e-value:1.5e-20;bit-score:97.0)"; Scaffold002 rebuild exon 3341691 3341853 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3341912 3342020 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3342083 3342230 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3342294 3342315 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3342436 3342553 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3342618 3343004 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3343281 3343691 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3343752 3343971 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild exon 3344208 3344303 . - . gene_id "RvY_04560"; transcript_id "RvY_04560.1"; Scaffold002 rebuild transcript 3348420 3352019 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family"; Scaffold002 rebuild exon 3348420 3348737 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3349068 3349418 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3349606 3349791 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3349858 3350079 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3350256 3350402 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3350463 3350678 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3350806 3350937 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3351033 3351218 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3351305 3351398 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3351526 3351759 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild exon 3351820 3352019 . - . gene_id "RvY_04561"; transcript_id "RvY_04561.1"; Scaffold002 rebuild transcript 3353382 3354178 . - . gene_id "RvY_04563"; transcript_id "RvY_04563.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3353382 3353569 . - . gene_id "RvY_04563"; transcript_id "RvY_04563.1"; Scaffold002 rebuild exon 3353616 3353960 . - . gene_id "RvY_04563"; transcript_id "RvY_04563.1"; Scaffold002 rebuild exon 3354133 3354178 . - . gene_id "RvY_04563"; transcript_id "RvY_04563.1"; Scaffold002 rebuild transcript 3354202 3354994 . - . gene_id "RvY_04564"; transcript_id "RvY_04564.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 3354202 3354354 . - . gene_id "RvY_04564"; transcript_id "RvY_04564.1"; Scaffold002 rebuild exon 3354488 3354994 . - . gene_id "RvY_04564"; transcript_id "RvY_04564.1"; Scaffold002 rebuild transcript 3355028 3355408 . - . gene_id "RvY_04565"; transcript_id "RvY_04565.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 3355028 3355408 . - . gene_id "RvY_04565"; transcript_id "RvY_04565.1"; Scaffold002 rebuild transcript 3357156 3358055 . + . gene_id "RvY_04566"; transcript_id "RvY_04566.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3357156 3357419 . + . gene_id "RvY_04566"; transcript_id "RvY_04566.1"; Scaffold002 rebuild exon 3357900 3358055 . + . gene_id "RvY_04566"; transcript_id "RvY_04566.1"; Scaffold002 rebuild transcript 3359312 3362164 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; gene_name "pyrG"; annotation "CTP synthase 1"; Pfam "[Peptidase_C26] Peptidase C26|[GATase] Glutamine amidotransferase class-I|[CTP_synth_N] CTP synthase N-terminus|[CbiA] CobQ/CobB/MinD/ParA nucleotide binding domain"; CDD "CTP synthetase; Validated"; EC "EC6.3.4.2"; KO "K01937"; similar_genes "PYRG1_DANRE(e-value:5.2e-63;bit-score:238.0)"; Scaffold002 rebuild exon 3359312 3359477 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3359632 3359912 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3360142 3360423 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3360488 3360645 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3360724 3360865 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3360940 3361028 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3361087 3361181 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3361259 3361365 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3361467 3361563 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild exon 3361719 3362164 . + . gene_id "RvY_04567"; transcript_id "RvY_04567.1"; Scaffold002 rebuild transcript 3362343 3363170 . - . gene_id "RvY_04568"; transcript_id "RvY_04568.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3362343 3362429 . - . gene_id "RvY_04568"; transcript_id "RvY_04568.1"; Scaffold002 rebuild exon 3363042 3363170 . - . gene_id "RvY_04568"; transcript_id "RvY_04568.1"; Scaffold002 rebuild transcript 3363259 3365061 . + . gene_id "RvY_04569"; transcript_id "RvY_04569.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3363259 3363292 . + . gene_id "RvY_04569"; transcript_id "RvY_04569.1"; Scaffold002 rebuild exon 3364130 3364482 . + . gene_id "RvY_04569"; transcript_id "RvY_04569.1"; Scaffold002 rebuild exon 3364531 3365061 . + . gene_id "RvY_04569"; transcript_id "RvY_04569.1"; Scaffold002 rebuild transcript 3368554 3371949 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; gene_name "PRPF3"; annotation "putative U4/U6 small nuclear ribonucleoprotein Prp3"; Pfam "[DUF1115]|[PRP3] pre-mRNA processing factor 3 (PRP3)"; KO "K12843"; similar_genes "PRPF3_HUMAN(e-value:2.4e-31;bit-score:133.0)"; Scaffold002 rebuild exon 3368554 3368625 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3368718 3368867 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3368952 3369036 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3369120 3369457 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3369651 3369903 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3370064 3370207 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3370295 3370394 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3370575 3370807 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild exon 3371669 3371949 . + . gene_id "RvY_04570"; transcript_id "RvY_04570.1"; Scaffold002 rebuild transcript 3372153 3373281 . - . gene_id "RvY_04571"; transcript_id "RvY_04571.1"; annotation "hypothetical protein."; Pfam "[KTI12] Chromatin associated protein KTI12|[AAA_33] AAA domain"; KO "K15456"; similar_genes "KTI12_XENLA(e-value:2.3e-08;bit-score:57.0)"; Scaffold002 rebuild exon 3372153 3372594 . - . gene_id "RvY_04571"; transcript_id "RvY_04571.1"; Scaffold002 rebuild exon 3372684 3372763 . - . gene_id "RvY_04571"; transcript_id "RvY_04571.1"; Scaffold002 rebuild exon 3372900 3373060 . - . gene_id "RvY_04571"; transcript_id "RvY_04571.1"; Scaffold002 rebuild exon 3373128 3373281 . - . gene_id "RvY_04571"; transcript_id "RvY_04571.1"; Scaffold002 rebuild transcript 3381569 3382711 . + . gene_id "RvY_04572"; transcript_id "RvY_04572.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3381569 3382457 . + . gene_id "RvY_04572"; transcript_id "RvY_04572.1"; Scaffold002 rebuild exon 3382548 3382711 . + . gene_id "RvY_04572"; transcript_id "RvY_04572.1"; Scaffold002 rebuild transcript 3383200 3383619 . - . gene_id "RvY_04573"; transcript_id "RvY_04573.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3383200 3383619 . - . gene_id "RvY_04573"; transcript_id "RvY_04573.1"; Scaffold002 rebuild transcript 3383927 3385790 . - . gene_id "RvY_04574"; transcript_id "RvY_04574.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3383927 3383973 . - . gene_id "RvY_04574"; transcript_id "RvY_04574.1"; Scaffold002 rebuild exon 3385210 3385420 . - . gene_id "RvY_04574"; transcript_id "RvY_04574.1"; Scaffold002 rebuild exon 3385502 3385562 . - . gene_id "RvY_04574"; transcript_id "RvY_04574.1"; Scaffold002 rebuild exon 3385723 3385790 . - . gene_id "RvY_04574"; transcript_id "RvY_04574.1"; Scaffold002 rebuild transcript 3384639 3385519 . + . gene_id "RvY_04575"; transcript_id "RvY_04575.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3384639 3384688 . + . gene_id "RvY_04575"; transcript_id "RvY_04575.1"; Scaffold002 rebuild exon 3385234 3385519 . + . gene_id "RvY_04575"; transcript_id "RvY_04575.1"; Scaffold002 rebuild transcript 3385911 3388044 . + . gene_id "RvY_04576"; transcript_id "RvY_04576.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3385911 3386331 . + . gene_id "RvY_04576"; transcript_id "RvY_04576.1"; Scaffold002 rebuild exon 3386966 3387442 . + . gene_id "RvY_04576"; transcript_id "RvY_04576.1"; Scaffold002 rebuild exon 3387647 3388044 . + . gene_id "RvY_04576"; transcript_id "RvY_04576.1"; Scaffold002 rebuild transcript 3386082 3386327 . - . gene_id "RvY_04577"; transcript_id "RvY_04577.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3386082 3386327 . - . gene_id "RvY_04577"; transcript_id "RvY_04577.1"; Scaffold002 rebuild transcript 3388362 3393617 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERL_BOVIN(e-value:1.5e-09;bit-score:61.0)"; Scaffold002 rebuild exon 3388362 3388821 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3389081 3389192 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3389288 3389632 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3389710 3389927 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3390159 3390425 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3390487 3390538 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3390625 3390735 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3390840 3390899 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3391007 3391250 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3391331 3391369 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3391443 3391877 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3392203 3392489 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3392966 3393185 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild exon 3393276 3393617 . - . gene_id "RvY_04578"; transcript_id "RvY_04578.1"; Scaffold002 rebuild transcript 3403014 3403748 . + . gene_id "RvY_04579"; transcript_id "RvY_04579.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3403014 3403092 . + . gene_id "RvY_04579"; transcript_id "RvY_04579.1"; Scaffold002 rebuild exon 3403681 3403748 . + . gene_id "RvY_04579"; transcript_id "RvY_04579.1"; Scaffold002 rebuild transcript 3405734 3408151 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; gene_name "(1,2,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3405734 3405971 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3406033 3406076 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3406137 3406175 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3406773 3406859 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3406991 3407128 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3407192 3407242 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3407299 3407410 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3407479 3407537 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3407597 3407735 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3407831 3407918 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild exon 3408004 3408151 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.1"; Scaffold002 rebuild transcript 3404561 3407191 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; gene_name "(1,2,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3404561 3404933 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3405038 3405079 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3405568 3405592 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3405655 3405971 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3406033 3406076 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3406137 3406175 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3406773 3406859 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild exon 3406991 3407191 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.2"; Scaffold002 rebuild transcript 3406698 3408151 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; gene_name "(1,2,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3406698 3406859 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3406991 3407128 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3407192 3407242 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3407299 3407410 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3407479 3407537 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3407597 3407735 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3407831 3407918 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild exon 3408004 3408151 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.3"; Scaffold002 rebuild transcript 3404561 3406044 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.4"; gene_name "(1,2,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3404561 3404933 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.4"; Scaffold002 rebuild exon 3405038 3405079 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.4"; Scaffold002 rebuild exon 3405568 3405592 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.4"; Scaffold002 rebuild exon 3405655 3405973 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.4"; Scaffold002 rebuild exon 3406033 3406044 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.4"; Scaffold002 rebuild transcript 3407021 3408151 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; gene_name "(1,2,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3407021 3407128 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild exon 3407192 3407242 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild exon 3407299 3407410 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild exon 3407479 3407537 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild exon 3407597 3407735 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild exon 3407831 3407918 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild exon 3408004 3408151 . + . gene_id "RvY_04580"; transcript_id "RvY_04580.5"; Scaffold002 rebuild transcript 3407622 3408038 . - . gene_id "RvY_04581"; transcript_id "RvY_04581.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3407622 3407753 . - . gene_id "RvY_04581"; transcript_id "RvY_04581.1"; Scaffold002 rebuild exon 3407820 3408038 . - . gene_id "RvY_04581"; transcript_id "RvY_04581.1"; Scaffold002 rebuild transcript 3409923 3410279 . + . gene_id "RvY_04582"; transcript_id "RvY_04582.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3409923 3410279 . + . gene_id "RvY_04582"; transcript_id "RvY_04582.1"; Scaffold002 rebuild transcript 3409655 3409996 . + . gene_id "RvY_04582"; transcript_id "RvY_04582.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3409655 3409996 . + . gene_id "RvY_04582"; transcript_id "RvY_04582.2"; Scaffold002 rebuild transcript 3410369 3410662 . - . gene_id "RvY_04583"; transcript_id "RvY_04583.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3410369 3410392 . - . gene_id "RvY_04583"; transcript_id "RvY_04583.1"; Scaffold002 rebuild exon 3410468 3410662 . - . gene_id "RvY_04583"; transcript_id "RvY_04583.1"; Scaffold002 rebuild transcript 3410743 3411183 . + . gene_id "RvY_04584"; transcript_id "RvY_04584.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3410743 3410761 . + . gene_id "RvY_04584"; transcript_id "RvY_04584.1"; Scaffold002 rebuild exon 3410897 3411183 . + . gene_id "RvY_04584"; transcript_id "RvY_04584.1"; Scaffold002 rebuild transcript 3411840 3412373 . - . gene_id "RvY_04585"; transcript_id "RvY_04585.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3411840 3412373 . - . gene_id "RvY_04585"; transcript_id "RvY_04585.1"; Scaffold002 rebuild transcript 3415922 3417301 . + . gene_id "RvY_04586"; transcript_id "RvY_04586.1"; annotation "hypothetical protein."; Pfam "[PBD] P21-Rho-binding domain"; Scaffold002 rebuild exon 3415922 3416002 . + . gene_id "RvY_04586"; transcript_id "RvY_04586.1"; Scaffold002 rebuild exon 3416473 3416583 . + . gene_id "RvY_04586"; transcript_id "RvY_04586.1"; Scaffold002 rebuild exon 3417206 3417301 . + . gene_id "RvY_04586"; transcript_id "RvY_04586.1"; Scaffold002 rebuild transcript 3422245 3428582 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; gene_name "Vinculin"; annotation "hypothetical protein."; Pfam "[Vinculin] Vinculin family"; CDD "Vinculin family."; similar_genes "CTNL1_PONAB(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 3422245 3422367 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3423190 3423379 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3423714 3423886 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3423992 3424201 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3424647 3424868 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3425727 3425918 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3426073 3426159 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3426280 3426438 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3426724 3426816 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3427007 3427195 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3427608 3428132 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild exon 3428343 3428582 . + . gene_id "RvY_04587"; transcript_id "RvY_04587.1"; Scaffold002 rebuild transcript 3428657 3429974 . - . gene_id "RvY_04588"; transcript_id "RvY_04588.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3428657 3428709 . - . gene_id "RvY_04588"; transcript_id "RvY_04588.1"; Scaffold002 rebuild exon 3429881 3429974 . - . gene_id "RvY_04588"; transcript_id "RvY_04588.1"; Scaffold002 rebuild transcript 3431188 3435880 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; gene_name "CACNBN"; annotation "putative Voltage-dependent L-type calcium channel subunit beta-2"; Pfam "[VGCC_beta4Aa_N] Voltage gated calcium channel subunit beta domain 4Aa N terminal|[Guanylate_kin] Guanylate kinase"; KO "K05317"; similar_genes "CACB2_RABIT(e-value:3.1e-48;bit-score:189.0)"; Scaffold002 rebuild exon 3431188 3431934 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3432013 3432164 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3432546 3432658 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3432945 3433084 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3433696 3433820 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3433918 3434116 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3434181 3434303 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild exon 3435548 3435880 . - . gene_id "RvY_04589"; transcript_id "RvY_04589.1"; Scaffold002 rebuild transcript 3436231 3437940 . + . gene_id "RvY_04590"; transcript_id "RvY_04590.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3436231 3436357 . + . gene_id "RvY_04590"; transcript_id "RvY_04590.1"; Scaffold002 rebuild exon 3437912 3437940 . + . gene_id "RvY_04590"; transcript_id "RvY_04590.1"; Scaffold002 rebuild transcript 3438233 3438409 . + . gene_id "RvY_04591"; transcript_id "RvY_04591.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3438233 3438409 . + . gene_id "RvY_04591"; transcript_id "RvY_04591.1"; Scaffold002 rebuild transcript 3440081 3442206 . - . gene_id "RvY_04592"; transcript_id "RvY_04592.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3440081 3440206 . - . gene_id "RvY_04592"; transcript_id "RvY_04592.1"; Scaffold002 rebuild exon 3441964 3442206 . - . gene_id "RvY_04592"; transcript_id "RvY_04592.1"; Scaffold002 rebuild transcript 3445779 3448867 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[MAM]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 3445779 3445990 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3446061 3446260 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3446637 3446938 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3446996 3447119 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3447185 3447307 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3447392 3447523 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3447585 3447648 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3447833 3448328 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild exon 3448508 3448867 . + . gene_id "RvY_04593"; transcript_id "RvY_04593.1"; Scaffold002 rebuild transcript 3449030 3452402 . - . gene_id "RvY_04594"; transcript_id "RvY_04594.1"; gene_name "3a0107s03"; annotation "hypothetical protein."; Pfam "[PBP_like_2] PBP superfamily domain"; CDD "phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins."; Scaffold002 rebuild exon 3449030 3449455 . - . gene_id "RvY_04594"; transcript_id "RvY_04594.1"; Scaffold002 rebuild exon 3449622 3450456 . - . gene_id "RvY_04594"; transcript_id "RvY_04594.1"; Scaffold002 rebuild exon 3451025 3451208 . - . gene_id "RvY_04594"; transcript_id "RvY_04594.1"; Scaffold002 rebuild exon 3452309 3452402 . - . gene_id "RvY_04594"; transcript_id "RvY_04594.1"; Scaffold002 rebuild transcript 3456471 3458846 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; gene_name "MTNR1A"; annotation "melatonin receptor 1A"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04285"; Scaffold002 rebuild exon 3456471 3456846 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3456916 3457243 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3457315 3457343 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3457419 3457470 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3458023 3458141 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3458237 3458357 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3458431 3458521 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3458584 3458610 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild exon 3458670 3458846 . - . gene_id "RvY_04595"; transcript_id "RvY_04595.1"; Scaffold002 rebuild transcript 3459109 3459315 . + . gene_id "RvY_04596"; transcript_id "RvY_04596.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3459109 3459315 . + . gene_id "RvY_04596"; transcript_id "RvY_04596.1"; Scaffold002 rebuild transcript 3459975 3463587 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; gene_name "PcbC"; annotation "hypothetical protein."; Pfam "[DIOX_N] non-haem dioxygenase in morphine synthesis N-terminal|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Isopenicillin N synthase and related dioxygenases [General function prediction only]"; Scaffold002 rebuild exon 3459975 3460172 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; Scaffold002 rebuild exon 3461362 3461515 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; Scaffold002 rebuild exon 3461625 3461887 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; Scaffold002 rebuild exon 3461997 3462060 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; Scaffold002 rebuild exon 3463215 3463336 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; Scaffold002 rebuild exon 3463444 3463587 . - . gene_id "RvY_04597"; transcript_id "RvY_04597.1"; Scaffold002 rebuild transcript 3464110 3464283 . + . gene_id "RvY_04598"; transcript_id "RvY_04598.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3464110 3464283 . + . gene_id "RvY_04598"; transcript_id "RvY_04598.1"; Scaffold002 rebuild transcript 3466181 3473332 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; gene_name "USP19"; annotation "ubiquitin carboxyl-terminal hydrolase 19 [EC:3.1.2.15]"; Pfam "[zf-MYND] MYND finger|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11847"; similar_genes "UBP9_ARATH(e-value:3.2e-16;bit-score:83.0)"; Scaffold002 rebuild exon 3466181 3466254 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3466392 3466697 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3467065 3467249 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3467311 3467545 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3467603 3468021 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3468302 3468448 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3468517 3468699 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3468909 3469111 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3469175 3469285 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3469370 3469546 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3469744 3469970 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3470357 3470782 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3471080 3471216 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3471330 3471428 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3471495 3471595 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3471658 3471892 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3471965 3472054 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3472120 3472208 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3472279 3472633 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild exon 3472917 3473332 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.1"; Scaffold002 rebuild transcript 3466351 3473332 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; gene_name "USP19"; annotation "ubiquitin carboxyl-terminal hydrolase 19 [EC:3.1.2.15]"; Pfam "[zf-MYND] MYND finger|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11847"; similar_genes "UBP9_ARATH(e-value:3.2e-16;bit-score:83.0)"; Scaffold002 rebuild exon 3466351 3466697 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3467065 3467249 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3467311 3467545 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3467603 3468021 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3468302 3468448 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3468517 3468699 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3468909 3469111 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3469175 3469285 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3469370 3469546 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3469744 3469970 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3470357 3470782 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3471080 3471216 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3471330 3471428 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3471495 3471595 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3471658 3471892 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3471965 3472054 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3472120 3472208 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3472279 3472633 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild exon 3472917 3473332 . - . gene_id "RvY_04599"; transcript_id "RvY_04599.2"; Scaffold002 rebuild transcript 3475387 3477144 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; annotation "putative Solute carrier family 25 member 34"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15117"; similar_genes "S2534_DANRE(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 3475387 3475458 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3475565 3475621 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3475717 3475933 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3475996 3476033 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3476124 3476273 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3476422 3476490 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3476568 3476697 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild exon 3476924 3477144 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.1"; Scaffold002 rebuild transcript 3475580 3476900 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; annotation "putative Solute carrier family 25 member 34"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15117"; similar_genes "S2534_DANRE(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 3475580 3475621 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; Scaffold002 rebuild exon 3475717 3475933 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; Scaffold002 rebuild exon 3475996 3476033 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; Scaffold002 rebuild exon 3476124 3476273 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; Scaffold002 rebuild exon 3476422 3476490 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; Scaffold002 rebuild exon 3476568 3476900 . + . gene_id "RvY_04600"; transcript_id "RvY_04600.2"; Scaffold002 rebuild transcript 3476532 3477664 . - . gene_id "RvY_04601"; transcript_id "RvY_04601.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3476532 3476669 . - . gene_id "RvY_04601"; transcript_id "RvY_04601.1"; Scaffold002 rebuild exon 3477593 3477664 . - . gene_id "RvY_04601"; transcript_id "RvY_04601.1"; Scaffold002 rebuild transcript 3477791 3479493 . + . gene_id "RvY_04602"; transcript_id "RvY_04602.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3477791 3478122 . + . gene_id "RvY_04602"; transcript_id "RvY_04602.1"; Scaffold002 rebuild exon 3478746 3478911 . + . gene_id "RvY_04602"; transcript_id "RvY_04602.1"; Scaffold002 rebuild exon 3478969 3479493 . + . gene_id "RvY_04602"; transcript_id "RvY_04602.1"; Scaffold002 rebuild transcript 3477823 3478122 . - . gene_id "RvY_04603"; transcript_id "RvY_04603.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3477823 3478122 . - . gene_id "RvY_04603"; transcript_id "RvY_04603.1"; Scaffold002 rebuild transcript 3480695 3483508 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; annotation "putative Excitatory amino acid transporter 3"; Pfam "[SDF] Sodium:dicarboxylate symporter family"; similar_genes "EAA3_HUMAN(e-value:5.4e-50;bit-score:195.0)"; Scaffold002 rebuild exon 3480695 3480794 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3481151 3481744 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3481815 3481895 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3481980 3482079 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3482163 3482241 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3482309 3482335 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3482413 3482600 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3482678 3482703 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3482775 3482883 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3482950 3483013 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3483105 3483175 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild exon 3483256 3483508 . + . gene_id "RvY_04604"; transcript_id "RvY_04604.1"; Scaffold002 rebuild transcript 3484123 3485168 . + . gene_id "RvY_04605"; transcript_id "RvY_04605.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold002 rebuild exon 3484123 3484361 . + . gene_id "RvY_04605"; transcript_id "RvY_04605.1"; Scaffold002 rebuild exon 3484426 3484486 . + . gene_id "RvY_04605"; transcript_id "RvY_04605.1"; Scaffold002 rebuild exon 3484580 3484623 . + . gene_id "RvY_04605"; transcript_id "RvY_04605.1"; Scaffold002 rebuild exon 3484743 3484801 . + . gene_id "RvY_04605"; transcript_id "RvY_04605.1"; Scaffold002 rebuild exon 3484870 3485168 . + . gene_id "RvY_04605"; transcript_id "RvY_04605.1"; Scaffold002 rebuild transcript 3485468 3487088 . + . gene_id "RvY_04606"; transcript_id "RvY_04606.1"; gene_name "PTZ00037"; annotation "hypothetical protein."; Pfam "[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "DnaJ_C chaperone protein; Provisional"; Scaffold002 rebuild exon 3485468 3485708 . + . gene_id "RvY_04606"; transcript_id "RvY_04606.1"; Scaffold002 rebuild exon 3485733 3485854 . + . gene_id "RvY_04606"; transcript_id "RvY_04606.1"; Scaffold002 rebuild exon 3486029 3486364 . + . gene_id "RvY_04606"; transcript_id "RvY_04606.1"; Scaffold002 rebuild exon 3486636 3487088 . + . gene_id "RvY_04606"; transcript_id "RvY_04606.1"; Scaffold002 rebuild transcript 3491014 3492571 . + . gene_id "RvY_04607"; transcript_id "RvY_04607.1"; product "HOX abdominal-B"; gene_name "HOX_10"; annotation "HOX abdominal-B | homeobox protein HoxA/C/D10"; Pfam "[Homeobox]"; KO "K09295"; similar_genes "ABDB_DROME(e-value:3.8e-23;bit-score:106.0)"; Scaffold002 rebuild exon 3491014 3491428 . + . gene_id "RvY_04607"; transcript_id "RvY_04607.1"; Scaffold002 rebuild exon 3492028 3492211 . + . gene_id "RvY_04607"; transcript_id "RvY_04607.1"; Scaffold002 rebuild exon 3492424 3492571 . + . gene_id "RvY_04607"; transcript_id "RvY_04607.1"; Scaffold002 rebuild transcript 3493555 3496314 . - . gene_id "RvY_04608"; transcript_id "RvY_04608.1"; product "HOX abdominal-B2"; gene_name "HOX_9"; annotation "HOX abdominal-B2 | putative Homeobox protein abdominal-B"; Pfam "[Homeobox]"; KO "K09294"; similar_genes "ABDB_DROME(e-value:7.7e-26;bit-score:115.0)"; Scaffold002 rebuild exon 3493555 3493702 . - . gene_id "RvY_04608"; transcript_id "RvY_04608.1"; Scaffold002 rebuild exon 3493788 3493968 . - . gene_id "RvY_04608"; transcript_id "RvY_04608.1"; Scaffold002 rebuild exon 3495885 3496314 . - . gene_id "RvY_04608"; transcript_id "RvY_04608.1"; Scaffold002 rebuild transcript 3499993 3500199 . - . gene_id "RvY_04609"; transcript_id "RvY_04609.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3499993 3500199 . - . gene_id "RvY_04609"; transcript_id "RvY_04609.1"; Scaffold002 rebuild transcript 3502049 3504538 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; gene_name "K06210"; annotation "ribosylnicotinamide kinase domain of NadR"; Pfam "[HEM4] Uroporphyrinogen-III synthase HemD|[CTP_transf_2] Cytidylyltransferase"; CDD "Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease."; KO "K06210"; Scaffold002 rebuild exon 3502049 3502168 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3502238 3502333 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3502407 3502492 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3502553 3502711 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3502895 3502969 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3503030 3503204 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3503277 3503355 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3503422 3503579 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3503634 3503732 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3503804 3504029 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3504182 3504255 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3504320 3504408 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild exon 3504469 3504538 . - . gene_id "RvY_04610"; transcript_id "RvY_04610.1"; Scaffold002 rebuild transcript 3505425 3505670 . - . gene_id "RvY_04611"; transcript_id "RvY_04611.1"; annotation "hypothetical protein."; Pfam "[Romo1] Reactive mitochondrial oxygen species modulator 1"; similar_genes "ROMO1_XENTR(e-value:6.6e-23;bit-score:105.0)"; Scaffold002 rebuild exon 3505425 3505670 . - . gene_id "RvY_04611"; transcript_id "RvY_04611.1"; Scaffold002 rebuild transcript 3506136 3507569 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; annotation "hypothetical protein."; Pfam "[BAR]"; Scaffold002 rebuild exon 3506136 3506227 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3506311 3506372 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3506598 3506734 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3506816 3506856 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3506916 3506976 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3507040 3507120 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3507196 3507330 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild exon 3507396 3507569 . + . gene_id "RvY_04612"; transcript_id "RvY_04612.1"; Scaffold002 rebuild transcript 3508310 3511652 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; gene_name "CHK2"; annotation "serine/threonine-protein kinase Chk2 [EC:2.7.11.1]"; Pfam "(1)[APH] Phosphotransferase enzyme family|[Pkinase] Protein kinase domain|[FHA]|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K06641"; similar_genes "RAD53_YEAST(e-value:3.4e-09;bit-score:60.0)"; Scaffold002 rebuild exon 3508310 3508692 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3508759 3508874 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3508954 3509111 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3509172 3509343 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3509436 3509464 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3509522 3509629 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3509709 3509905 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3509984 3510049 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3510132 3510198 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3510388 3510530 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3510601 3510771 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild exon 3511550 3511652 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.1"; Scaffold002 rebuild transcript 3508310 3511652 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; gene_name "CHK2"; annotation "serine/threonine-protein kinase Chk2 [EC:2.7.11.1]"; Pfam "(1)[APH] Phosphotransferase enzyme family|[Pkinase] Protein kinase domain|[FHA]|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K06641"; similar_genes "RAD53_YEAST(e-value:3.4e-09;bit-score:60.0)"; Scaffold002 rebuild exon 3508310 3508692 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3508759 3508874 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3508954 3509111 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3509172 3509343 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3509436 3509491 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3509576 3509629 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3509709 3509905 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3509984 3510049 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3510132 3510198 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3510388 3510530 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3510601 3510771 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild exon 3511550 3511652 . - . gene_id "RvY_04613"; transcript_id "RvY_04613.2"; Scaffold002 rebuild transcript 3512078 3512317 . + . gene_id "RvY_04614"; transcript_id "RvY_04614.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3512078 3512317 . + . gene_id "RvY_04614"; transcript_id "RvY_04614.1"; Scaffold002 rebuild transcript 3511890 3512204 . + . gene_id "RvY_04614"; transcript_id "RvY_04614.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3511890 3512051 . + . gene_id "RvY_04614"; transcript_id "RvY_04614.2"; Scaffold002 rebuild exon 3512133 3512204 . + . gene_id "RvY_04614"; transcript_id "RvY_04614.2"; Scaffold002 rebuild transcript 3514328 3517390 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; annotation "hypothetical protein."; Pfam "[GH3] GH3 auxin-responsive promoter"; similar_genes "GHDC_HUMAN(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 3514328 3514356 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3514420 3514625 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3514826 3515349 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3515526 3516042 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3516152 3516324 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3516419 3516485 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3516603 3516663 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3516741 3516901 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3517008 3517105 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild exon 3517166 3517390 . + . gene_id "RvY_04615"; transcript_id "RvY_04615.1"; Scaffold002 rebuild transcript 3523333 3527736 . + . gene_id "RvY_04616"; transcript_id "RvY_04616.1"; annotation "hypothetical protein."; Pfam "[Fez1]"; similar_genes "K0552_HUMAN(e-value:2.0e-07;bit-score:54.0)"; Scaffold002 rebuild exon 3523333 3523941 . + . gene_id "RvY_04616"; transcript_id "RvY_04616.1"; Scaffold002 rebuild exon 3526065 3526507 . + . gene_id "RvY_04616"; transcript_id "RvY_04616.1"; Scaffold002 rebuild exon 3526646 3526829 . + . gene_id "RvY_04616"; transcript_id "RvY_04616.1"; Scaffold002 rebuild exon 3526909 3527736 . + . gene_id "RvY_04616"; transcript_id "RvY_04616.1"; Scaffold002 rebuild transcript 3528605 3529673 . - . gene_id "RvY_04617"; transcript_id "RvY_04617.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3528605 3528795 . - . gene_id "RvY_04617"; transcript_id "RvY_04617.1"; Scaffold002 rebuild exon 3528907 3529083 . - . gene_id "RvY_04617"; transcript_id "RvY_04617.1"; Scaffold002 rebuild exon 3529160 3529673 . - . gene_id "RvY_04617"; transcript_id "RvY_04617.1"; Scaffold002 rebuild transcript 3530519 3531315 . - . gene_id "RvY_04618"; transcript_id "RvY_04618.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3530519 3530649 . - . gene_id "RvY_04618"; transcript_id "RvY_04618.1"; Scaffold002 rebuild exon 3530736 3530909 . - . gene_id "RvY_04618"; transcript_id "RvY_04618.1"; Scaffold002 rebuild exon 3530985 3531315 . - . gene_id "RvY_04618"; transcript_id "RvY_04618.1"; Scaffold002 rebuild transcript 3531812 3535393 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.1"; gene_name "(1)cNMP"; annotation "hypothetical protein."; Pfam "(1)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1)Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; Scaffold002 rebuild exon 3531812 3532408 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.1"; Scaffold002 rebuild exon 3532675 3533202 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.1"; Scaffold002 rebuild exon 3533422 3533663 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.1"; Scaffold002 rebuild exon 3535045 3535393 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.1"; Scaffold002 rebuild transcript 3532567 3535393 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.2"; gene_name "(1)cNMP"; annotation "hypothetical protein."; Pfam "(1)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1)Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; Scaffold002 rebuild exon 3532567 3533202 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.2"; Scaffold002 rebuild exon 3533422 3533663 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.2"; Scaffold002 rebuild exon 3535045 3535393 . - . gene_id "RvY_04619"; transcript_id "RvY_04619.2"; Scaffold002 rebuild transcript 3536721 3543455 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3536721 3536899 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3537031 3537170 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3537259 3537446 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3537512 3537824 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3538048 3538762 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3539022 3539451 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3539626 3540265 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3540518 3540780 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3540969 3541255 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild exon 3543395 3543455 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.1"; Scaffold002 rebuild transcript 3536721 3545212 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3536721 3536899 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3537031 3537170 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3537259 3537446 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3537512 3537824 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3538048 3538762 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3539022 3539451 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3539626 3540265 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3540518 3540780 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3540969 3541255 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild exon 3545164 3545212 . - . gene_id "RvY_04620"; transcript_id "RvY_04620.2"; Scaffold002 rebuild transcript 3543969 3544151 . + . gene_id "RvY_04621"; transcript_id "RvY_04621.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3543969 3544151 . + . gene_id "RvY_04621"; transcript_id "RvY_04621.1"; Scaffold002 rebuild transcript 3546776 3549288 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; gene_name "GEL"; annotation "hypothetical protein."; Pfam "[Gelsolin] Gelsolin repeat"; CDD "Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains."; similar_genes "GELS_HOMAM(e-value:2.4e-14;bit-score:77.0)"; Scaffold002 rebuild exon 3546776 3546865 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3546963 3547037 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3547371 3547409 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3547620 3547685 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3547760 3547890 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3547956 3548058 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3548158 3548329 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3548400 3548443 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3548535 3548644 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3548802 3548886 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3548971 3549078 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild exon 3549178 3549288 . + . gene_id "RvY_04622"; transcript_id "RvY_04622.1"; Scaffold002 rebuild transcript 3550187 3551332 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3550187 3550271 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.1"; Scaffold002 rebuild exon 3550695 3551332 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.1"; Scaffold002 rebuild transcript 3550187 3551332 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3550187 3550271 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.2"; Scaffold002 rebuild exon 3550695 3550735 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.2"; Scaffold002 rebuild exon 3550844 3551332 . + . gene_id "RvY_04623"; transcript_id "RvY_04623.2"; Scaffold002 rebuild transcript 3551423 3552145 . + . gene_id "RvY_04624"; transcript_id "RvY_04624.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold002 rebuild exon 3551423 3551448 . + . gene_id "RvY_04624"; transcript_id "RvY_04624.1"; Scaffold002 rebuild exon 3551773 3552145 . + . gene_id "RvY_04624"; transcript_id "RvY_04624.1"; Scaffold002 rebuild transcript 3552968 3553297 . + . gene_id "RvY_04625"; transcript_id "RvY_04625.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; Scaffold002 rebuild exon 3552968 3553037 . + . gene_id "RvY_04625"; transcript_id "RvY_04625.1"; Scaffold002 rebuild exon 3553104 3553297 . + . gene_id "RvY_04625"; transcript_id "RvY_04625.1"; Scaffold002 rebuild transcript 3553627 3553924 . + . gene_id "RvY_04626"; transcript_id "RvY_04626.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3553627 3553695 . + . gene_id "RvY_04626"; transcript_id "RvY_04626.1"; Scaffold002 rebuild exon 3553772 3553924 . + . gene_id "RvY_04626"; transcript_id "RvY_04626.1"; Scaffold002 rebuild transcript 3554698 3556235 . - . gene_id "RvY_04627"; transcript_id "RvY_04627.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold002 rebuild exon 3554698 3554909 . - . gene_id "RvY_04627"; transcript_id "RvY_04627.1"; Scaffold002 rebuild exon 3554982 3555737 . - . gene_id "RvY_04627"; transcript_id "RvY_04627.1"; Scaffold002 rebuild exon 3555811 3555954 . - . gene_id "RvY_04627"; transcript_id "RvY_04627.1"; Scaffold002 rebuild exon 3556049 3556235 . - . gene_id "RvY_04627"; transcript_id "RvY_04627.1"; Scaffold002 rebuild transcript 3556596 3558329 . - . gene_id "RvY_04628"; transcript_id "RvY_04628.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold002 rebuild exon 3556596 3556819 . - . gene_id "RvY_04628"; transcript_id "RvY_04628.1"; Scaffold002 rebuild exon 3556887 3557633 . - . gene_id "RvY_04628"; transcript_id "RvY_04628.1"; Scaffold002 rebuild exon 3557904 3558047 . - . gene_id "RvY_04628"; transcript_id "RvY_04628.1"; Scaffold002 rebuild exon 3558122 3558329 . - . gene_id "RvY_04628"; transcript_id "RvY_04628.1"; Scaffold002 rebuild transcript 3558359 3558713 . - . gene_id "RvY_04629"; transcript_id "RvY_04629.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3558359 3558534 . - . gene_id "RvY_04629"; transcript_id "RvY_04629.1"; Scaffold002 rebuild exon 3558632 3558713 . - . gene_id "RvY_04629"; transcript_id "RvY_04629.1"; Scaffold002 rebuild transcript 3558953 3560178 . + . gene_id "RvY_04630"; transcript_id "RvY_04630.1"; gene_name "ADO"; annotation "cysteamine dioxygenase [EC:1.13.11.19]"; Pfam "[DUF1637]"; EC "EC1.13.11.19"; KO "K10712"; Scaffold002 rebuild exon 3558953 3559408 . + . gene_id "RvY_04630"; transcript_id "RvY_04630.1"; Scaffold002 rebuild exon 3559707 3559962 . + . gene_id "RvY_04630"; transcript_id "RvY_04630.1"; Scaffold002 rebuild exon 3560060 3560178 . + . gene_id "RvY_04630"; transcript_id "RvY_04630.1"; Scaffold002 rebuild transcript 3563787 3564173 . + . gene_id "RvY_04631"; transcript_id "RvY_04631.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3563787 3564173 . + . gene_id "RvY_04631"; transcript_id "RvY_04631.1"; Scaffold002 rebuild transcript 3566618 3572031 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.1"; gene_name "EGR1"; annotation "putative Early growth response protein 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09203"; similar_genes "EGR1_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold002 rebuild exon 3566618 3566846 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.1"; Scaffold002 rebuild exon 3570114 3571309 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.1"; Scaffold002 rebuild exon 3571801 3572031 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.1"; Scaffold002 rebuild transcript 3570206 3572031 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.2"; gene_name "EGR1"; annotation "putative Early growth response protein 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09203"; similar_genes "EGR1_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold002 rebuild exon 3570206 3571309 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.2"; Scaffold002 rebuild exon 3571801 3572031 . + . gene_id "RvY_04632"; transcript_id "RvY_04632.2"; Scaffold002 rebuild transcript 3574399 3577849 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; gene_name "WD40"; annotation "WD repeat-containing protein 1"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR1_MOUSE(e-value:3.9e-93;bit-score:338.0)"; Scaffold002 rebuild exon 3574399 3574505 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3574617 3574767 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3575083 3575253 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3575339 3575534 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3575595 3575769 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3575934 3576021 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3576128 3576361 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3576427 3576510 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3576596 3576673 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3576761 3577089 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3577153 3577243 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3577638 3577759 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild exon 3577834 3577849 . - . gene_id "RvY_04633"; transcript_id "RvY_04633.1"; Scaffold002 rebuild transcript 3578782 3579445 . + . gene_id "RvY_04634"; transcript_id "RvY_04634.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3578782 3579130 . + . gene_id "RvY_04634"; transcript_id "RvY_04634.1"; Scaffold002 rebuild exon 3579144 3579445 . + . gene_id "RvY_04634"; transcript_id "RvY_04634.1"; Scaffold002 rebuild transcript 3580193 3580552 . + . gene_id "RvY_04635"; transcript_id "RvY_04635.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3580193 3580552 . + . gene_id "RvY_04635"; transcript_id "RvY_04635.1"; Scaffold002 rebuild transcript 3580705 3581640 . + . gene_id "RvY_04636"; transcript_id "RvY_04636.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3580705 3580755 . + . gene_id "RvY_04636"; transcript_id "RvY_04636.1"; Scaffold002 rebuild exon 3580893 3581105 . + . gene_id "RvY_04636"; transcript_id "RvY_04636.1"; Scaffold002 rebuild exon 3581177 3581293 . + . gene_id "RvY_04636"; transcript_id "RvY_04636.1"; Scaffold002 rebuild exon 3581373 3581462 . + . gene_id "RvY_04636"; transcript_id "RvY_04636.1"; Scaffold002 rebuild exon 3581590 3581640 . + . gene_id "RvY_04636"; transcript_id "RvY_04636.1"; Scaffold002 rebuild transcript 3582381 3583037 . + . gene_id "RvY_04637"; transcript_id "RvY_04637.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3582381 3582461 . + . gene_id "RvY_04637"; transcript_id "RvY_04637.1"; Scaffold002 rebuild exon 3582566 3582712 . + . gene_id "RvY_04637"; transcript_id "RvY_04637.1"; Scaffold002 rebuild exon 3582797 3582880 . + . gene_id "RvY_04637"; transcript_id "RvY_04637.1"; Scaffold002 rebuild exon 3582957 3583037 . + . gene_id "RvY_04637"; transcript_id "RvY_04637.1"; Scaffold002 rebuild transcript 3583431 3587675 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3583431 3583632 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3583892 3584451 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3584520 3585179 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3585511 3585875 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3586103 3586213 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3586315 3586564 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3586736 3586959 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild exon 3587528 3587675 . - . gene_id "RvY_04638"; transcript_id "RvY_04638.1"; Scaffold002 rebuild transcript 3591683 3591934 . - . gene_id "RvY_04639"; transcript_id "RvY_04639.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3591683 3591934 . - . gene_id "RvY_04639"; transcript_id "RvY_04639.1"; Scaffold002 rebuild transcript 3591933 3594298 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; gene_name "guaB"; annotation "Inosine-5'-monophosphate dehydrogenase 1"; Pfam "[IMPDH] IMP dehydrogenase / GMP reductase domain|[His_biosynth] Histidine biosynthesis protein|[CBS]|[FMN_dh] FMN-dependent dehydrogenase|[NMO] Nitronate monooxygenase"; CDD "inosine-5'-monophosphate dehydrogenase; Provisional"; EC "EC1.1.1.205"; KO "K00088"; similar_genes "IMDH1_HUMAN(e-value:5.0e-93;bit-score:338.0)"; Scaffold002 rebuild exon 3591933 3592202 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; Scaffold002 rebuild exon 3592445 3592949 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; Scaffold002 rebuild exon 3593205 3593363 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; Scaffold002 rebuild exon 3593431 3593526 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; Scaffold002 rebuild exon 3593638 3593781 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; Scaffold002 rebuild exon 3593904 3594298 . + . gene_id "RvY_04640"; transcript_id "RvY_04640.1"; Scaffold002 rebuild transcript 3597912 3598682 . - . gene_id "RvY_04641"; transcript_id "RvY_04641.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3597912 3598046 . - . gene_id "RvY_04641"; transcript_id "RvY_04641.1"; Scaffold002 rebuild exon 3598596 3598682 . - . gene_id "RvY_04641"; transcript_id "RvY_04641.1"; Scaffold002 rebuild transcript 3598852 3599255 . + . gene_id "RvY_04642"; transcript_id "RvY_04642.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3598852 3598976 . + . gene_id "RvY_04642"; transcript_id "RvY_04642.1"; Scaffold002 rebuild exon 3598985 3599255 . + . gene_id "RvY_04642"; transcript_id "RvY_04642.1"; Scaffold002 rebuild transcript 3599255 3599968 . + . gene_id "RvY_04643"; transcript_id "RvY_04643.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 3599255 3599968 . + . gene_id "RvY_04643"; transcript_id "RvY_04643.1"; Scaffold002 rebuild transcript 3600704 3601120 . + . gene_id "RvY_04644"; transcript_id "RvY_04644.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3600704 3601120 . + . gene_id "RvY_04644"; transcript_id "RvY_04644.1"; Scaffold002 rebuild transcript 3601791 3603048 . + . gene_id "RvY_04645"; transcript_id "RvY_04645.1"; annotation "hypothetical protein."; Pfam "(1)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3601791 3602684 . + . gene_id "RvY_04645"; transcript_id "RvY_04645.1"; Scaffold002 rebuild exon 3602830 3603048 . + . gene_id "RvY_04645"; transcript_id "RvY_04645.1"; Scaffold002 rebuild transcript 3601791 3602735 . + . gene_id "RvY_04645"; transcript_id "RvY_04645.2"; annotation "hypothetical protein."; Pfam "(1)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3601791 3602735 . + . gene_id "RvY_04645"; transcript_id "RvY_04645.2"; Scaffold002 rebuild transcript 3604069 3606997 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3604069 3604218 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; Scaffold002 rebuild exon 3604947 3605123 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; Scaffold002 rebuild exon 3605227 3605948 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; Scaffold002 rebuild exon 3606029 3606133 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; Scaffold002 rebuild exon 3606215 3606832 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; Scaffold002 rebuild exon 3606922 3606997 . - . gene_id "RvY_04646"; transcript_id "RvY_04646.1"; Scaffold002 rebuild transcript 3607923 3608228 . - . gene_id "RvY_04647"; transcript_id "RvY_04647.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3607923 3608228 . - . gene_id "RvY_04647"; transcript_id "RvY_04647.1"; Scaffold002 rebuild transcript 3610522 3614442 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; gene_name "TC.LAT"; annotation "putative Large neutral amino acids transporter small subunit 1"; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "L-type amino acid transporter."; KO "K03450"; similar_genes "LAT1_RAT(e-value:6.4e-36;bit-score:148.0)"; Scaffold002 rebuild exon 3610522 3610723 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3610886 3611003 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3611082 3611110 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3611193 3611252 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3611343 3611456 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3612656 3612781 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3612849 3612993 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3613094 3613331 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3613394 3613445 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3613514 3613656 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3614034 3614078 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3614154 3614238 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild exon 3614303 3614442 . + . gene_id "RvY_04648"; transcript_id "RvY_04648.1"; Scaffold002 rebuild transcript 3615225 3617632 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold002 rebuild exon 3615225 3615611 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.1"; Scaffold002 rebuild exon 3616380 3616505 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.1"; Scaffold002 rebuild exon 3616577 3616709 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.1"; Scaffold002 rebuild exon 3616856 3617056 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.1"; Scaffold002 rebuild exon 3617130 3617632 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.1"; Scaffold002 rebuild transcript 3614572 3617632 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold002 rebuild exon 3614572 3614697 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; Scaffold002 rebuild exon 3615282 3615611 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; Scaffold002 rebuild exon 3616380 3616505 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; Scaffold002 rebuild exon 3616577 3616709 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; Scaffold002 rebuild exon 3616856 3617056 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; Scaffold002 rebuild exon 3617130 3617632 . - . gene_id "RvY_04649"; transcript_id "RvY_04649.2"; Scaffold002 rebuild transcript 3618944 3622624 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; gene_name "ABCB10"; annotation "putative Multidrug resistance protein 2"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "Conjugate Transporter-2 (CT2) Family protein."; EC "EC3.6.3.44"; KO "K05657"; similar_genes "MDR2_CRIGR(e-value:2.1e-47;bit-score:187.0)"; Scaffold002 rebuild exon 3618944 3619379 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3619469 3619666 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3619748 3619950 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3620059 3620193 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3620386 3620532 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3620634 3620769 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3620970 3621065 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3621145 3621292 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3621410 3621548 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3621741 3621915 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3622062 3622105 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild exon 3622358 3622624 . + . gene_id "RvY_04650"; transcript_id "RvY_04650.1"; Scaffold002 rebuild transcript 3623399 3624569 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.1"; gene_name "(1)PBP1_NPR_like(2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3623399 3623608 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.1"; Scaffold002 rebuild exon 3623861 3624032 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.1"; Scaffold002 rebuild exon 3624140 3624183 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.1"; Scaffold002 rebuild exon 3624250 3624288 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.1"; Scaffold002 rebuild exon 3624375 3624569 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.1"; Scaffold002 rebuild transcript 3622964 3623629 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.2"; gene_name "(1)PBP1_NPR_like(2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 3622964 3623259 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.2"; Scaffold002 rebuild exon 3623329 3623629 . + . gene_id "RvY_04651"; transcript_id "RvY_04651.2"; Scaffold002 rebuild transcript 3626314 3628453 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; gene_name "(1,2)CYCc(3)PBP1_NPR_like(4)TyrKc"; annotation "(1,2)putative Atrial natriuretic peptide receptor 1(3,4)hypothetical protein."; Pfam "(3)[ANF_receptor] Receptor family ligand binding region|(1,2,4)[Pkinase] Protein kinase domain|(1,2,4)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold002 rebuild exon 3626314 3626331 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3626398 3626716 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3626937 3627252 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3627334 3627408 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3627500 3627576 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3627679 3627746 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3627850 3628113 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3628185 3628234 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild exon 3628375 3628453 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.1"; Scaffold002 rebuild transcript 3626314 3628277 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; gene_name "(1,2)CYCc(3)PBP1_NPR_like(4)TyrKc"; annotation "(1,2)putative Atrial natriuretic peptide receptor 1(3,4)hypothetical protein."; Pfam "(3)[ANF_receptor] Receptor family ligand binding region|(1,2,4)[Pkinase] Protein kinase domain|(1,2,4)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold002 rebuild exon 3626314 3626331 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3626398 3626716 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3626937 3627252 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3627334 3627408 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3627500 3627576 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3627679 3627746 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3627850 3628113 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild exon 3628185 3628277 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.2"; Scaffold002 rebuild transcript 3624617 3626154 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; gene_name "(1,2)CYCc(3)PBP1_NPR_like(4)TyrKc"; annotation "(1,2)putative Atrial natriuretic peptide receptor 1(3,4)hypothetical protein."; Pfam "(3)[ANF_receptor] Receptor family ligand binding region|(1,2,4)[Pkinase] Protein kinase domain|(1,2,4)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold002 rebuild exon 3624617 3624721 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild exon 3624809 3624859 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild exon 3624929 3625105 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild exon 3625165 3625391 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild exon 3625465 3625532 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild exon 3625595 3625743 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild exon 3625819 3626154 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.3"; Scaffold002 rebuild transcript 3625726 3626802 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.4"; gene_name "(1,2)CYCc(3)PBP1_NPR_like(4)TyrKc"; annotation "(1,2)putative Atrial natriuretic peptide receptor 1(3,4)hypothetical protein."; Pfam "(3)[ANF_receptor] Receptor family ligand binding region|(1,2,4)[Pkinase] Protein kinase domain|(1,2,4)[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(4)Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "(1,2)EC4.6.1.2"; similar_genes "(1,2)ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold002 rebuild exon 3625726 3625743 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.4"; Scaffold002 rebuild exon 3625819 3626088 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.4"; Scaffold002 rebuild exon 3626155 3626331 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.4"; Scaffold002 rebuild exon 3626398 3626802 . + . gene_id "RvY_04652"; transcript_id "RvY_04652.4"; Scaffold002 rebuild transcript 3630410 3633920 . - . gene_id "RvY_04653"; transcript_id "RvY_04653.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 3630410 3630558 . - . gene_id "RvY_04653"; transcript_id "RvY_04653.1"; Scaffold002 rebuild exon 3633113 3633920 . - . gene_id "RvY_04653"; transcript_id "RvY_04653.1"; Scaffold002 rebuild transcript 3631749 3632327 . + . gene_id "RvY_04654"; transcript_id "RvY_04654.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3631749 3632327 . + . gene_id "RvY_04654"; transcript_id "RvY_04654.1"; Scaffold002 rebuild transcript 3634578 3635429 . - . gene_id "RvY_04655"; transcript_id "RvY_04655.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold002 rebuild exon 3634578 3635429 . - . gene_id "RvY_04655"; transcript_id "RvY_04655.1"; Scaffold002 rebuild transcript 3636847 3637101 . - . gene_id "RvY_04656"; transcript_id "RvY_04656.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3636847 3637101 . - . gene_id "RvY_04656"; transcript_id "RvY_04656.1"; Scaffold002 rebuild transcript 3637103 3637820 . - . gene_id "RvY_04657"; transcript_id "RvY_04657.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3637103 3637245 . - . gene_id "RvY_04657"; transcript_id "RvY_04657.1"; Scaffold002 rebuild exon 3637374 3637482 . - . gene_id "RvY_04657"; transcript_id "RvY_04657.1"; Scaffold002 rebuild exon 3637556 3637699 . - . gene_id "RvY_04657"; transcript_id "RvY_04657.1"; Scaffold002 rebuild exon 3637815 3637820 . - . gene_id "RvY_04657"; transcript_id "RvY_04657.1"; Scaffold002 rebuild transcript 3639618 3644431 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; gene_name "CYCc"; annotation "putative Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRA_MOUSE(e-value:8.6e-40;bit-score:161.0)"; Scaffold002 rebuild exon 3639618 3639891 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3640116 3640315 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3640392 3640602 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3640663 3640706 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3640990 3641139 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3641243 3641380 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3641440 3641667 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3641749 3641893 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3641962 3642043 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3642099 3642243 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3642304 3642486 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3642550 3642783 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3642931 3643255 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3643371 3643686 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3643891 3643967 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3644031 3644098 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild exon 3644231 3644431 . + . gene_id "RvY_04658"; transcript_id "RvY_04658.1"; Scaffold002 rebuild transcript 3644616 3644823 . + . gene_id "RvY_04659"; transcript_id "RvY_04659.1"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; Scaffold002 rebuild exon 3644616 3644705 . + . gene_id "RvY_04659"; transcript_id "RvY_04659.1"; Scaffold002 rebuild exon 3644773 3644823 . + . gene_id "RvY_04659"; transcript_id "RvY_04659.1"; Scaffold002 rebuild transcript 3647304 3651294 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3647304 3647745 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3647902 3648130 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3648197 3648453 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3648692 3649352 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3649408 3649847 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3649905 3650131 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3650218 3650342 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3650409 3650590 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild exon 3650825 3651294 . + . gene_id "RvY_04660"; transcript_id "RvY_04660.1"; Scaffold002 rebuild transcript 3651857 3652333 . + . gene_id "RvY_04661"; transcript_id "RvY_04661.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3651857 3651930 . + . gene_id "RvY_04661"; transcript_id "RvY_04661.1"; Scaffold002 rebuild exon 3651998 3652140 . + . gene_id "RvY_04661"; transcript_id "RvY_04661.1"; Scaffold002 rebuild exon 3652158 3652333 . + . gene_id "RvY_04661"; transcript_id "RvY_04661.1"; Scaffold002 rebuild transcript 3653457 3654436 . - . gene_id "RvY_04662"; transcript_id "RvY_04662.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3653457 3653672 . - . gene_id "RvY_04662"; transcript_id "RvY_04662.1"; Scaffold002 rebuild exon 3653990 3654184 . - . gene_id "RvY_04662"; transcript_id "RvY_04662.1"; Scaffold002 rebuild exon 3654263 3654307 . - . gene_id "RvY_04662"; transcript_id "RvY_04662.1"; Scaffold002 rebuild exon 3654398 3654436 . - . gene_id "RvY_04662"; transcript_id "RvY_04662.1"; Scaffold002 rebuild transcript 3658006 3662690 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; gene_name "ENTH_epsin"; annotation "putative Clathrin interactor 1"; Pfam "[ENTH]"; CDD "ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding."; similar_genes "EPN4_BOVIN(e-value:7.6e-41;bit-score:165.0)"; Scaffold002 rebuild exon 3658006 3658178 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3658263 3658485 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3658754 3659168 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3661140 3661256 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3661328 3661754 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3661859 3661993 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3662109 3662247 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3662304 3662434 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3662531 3662601 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild exon 3662659 3662690 . - . gene_id "RvY_04663"; transcript_id "RvY_04663.1"; Scaffold002 rebuild transcript 3662717 3665451 . - . gene_id "RvY_04664"; transcript_id "RvY_04664.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3662717 3663015 . - . gene_id "RvY_04664"; transcript_id "RvY_04664.1"; Scaffold002 rebuild exon 3663809 3664019 . - . gene_id "RvY_04664"; transcript_id "RvY_04664.1"; Scaffold002 rebuild exon 3664348 3664696 . - . gene_id "RvY_04664"; transcript_id "RvY_04664.1"; Scaffold002 rebuild exon 3665297 3665451 . - . gene_id "RvY_04664"; transcript_id "RvY_04664.1"; Scaffold002 rebuild transcript 3666154 3668144 . - . gene_id "RvY_04665"; transcript_id "RvY_04665.1"; gene_name "SERPIN"; annotation "hypothetical protein."; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia."; similar_genes "SPB10_PAPAN(e-value:2.6e-07;bit-score:53.0)"; Scaffold002 rebuild exon 3666154 3666338 . - . gene_id "RvY_04665"; transcript_id "RvY_04665.1"; Scaffold002 rebuild exon 3667139 3668144 . - . gene_id "RvY_04665"; transcript_id "RvY_04665.1"; Scaffold002 rebuild transcript 3669720 3670758 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3669720 3669850 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.1"; Scaffold002 rebuild exon 3670445 3670573 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.1"; Scaffold002 rebuild exon 3670713 3670758 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.1"; Scaffold002 rebuild transcript 3670543 3670939 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3670543 3670573 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.2"; Scaffold002 rebuild exon 3670713 3670939 . - . gene_id "RvY_04666"; transcript_id "RvY_04666.2"; Scaffold002 rebuild transcript 3673012 3673961 . + . gene_id "RvY_04667"; transcript_id "RvY_04667.1"; gene_name "K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; EC "EC2.8.2.1"; KO "K01025"; similar_genes "ST1A1_MOUSE(e-value:2.2e-06;bit-score:50.0)"; Scaffold002 rebuild exon 3673012 3673227 . + . gene_id "RvY_04667"; transcript_id "RvY_04667.1"; Scaffold002 rebuild exon 3673284 3673505 . + . gene_id "RvY_04667"; transcript_id "RvY_04667.1"; Scaffold002 rebuild exon 3673570 3673753 . + . gene_id "RvY_04667"; transcript_id "RvY_04667.1"; Scaffold002 rebuild exon 3673843 3673961 . + . gene_id "RvY_04667"; transcript_id "RvY_04667.1"; Scaffold002 rebuild transcript 3675186 3676431 . - . gene_id "RvY_04668"; transcript_id "RvY_04668.1"; annotation "hypothetical protein."; Pfam "[zf-A20] A20-like zinc finger|[zf-AN1] AN1-like Zinc finger"; similar_genes "ZFAN6_BOVIN(e-value:3.7e-17;bit-score:86.0)"; Scaffold002 rebuild exon 3675186 3675334 . - . gene_id "RvY_04668"; transcript_id "RvY_04668.1"; Scaffold002 rebuild exon 3675406 3675580 . - . gene_id "RvY_04668"; transcript_id "RvY_04668.1"; Scaffold002 rebuild exon 3676090 3676431 . - . gene_id "RvY_04668"; transcript_id "RvY_04668.1"; Scaffold002 rebuild transcript 3676795 3677115 . + . gene_id "RvY_04669"; transcript_id "RvY_04669.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3676795 3677115 . + . gene_id "RvY_04669"; transcript_id "RvY_04669.1"; Scaffold002 rebuild transcript 3677243 3677608 . + . gene_id "RvY_04670"; transcript_id "RvY_04670.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3677243 3677608 . + . gene_id "RvY_04670"; transcript_id "RvY_04670.1"; Scaffold002 rebuild transcript 3681056 3696751 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; gene_name "gmk"; annotation "guanylate kinase [EC:2.7.4.8]"; Pfam "[PDZ_2] PDZ domain|[Guanylate_kin] Guanylate kinase|[SH3_2] Variant SH3 domain|[ZU5]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions."; EC "EC2.7.4.8"; KO "K00942"; similar_genes "ZO1_CANFA(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 3681056 3681159 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3681242 3681388 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3681455 3681592 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3681658 3681900 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3682283 3682762 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3682982 3683174 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3683243 3683593 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3684466 3684563 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3684645 3684852 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3684951 3685027 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3685303 3685560 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3685680 3685879 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3685942 3686093 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3686156 3686364 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3686674 3686906 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3686999 3687231 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3687619 3687909 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3688505 3688583 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3688724 3688848 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3688942 3688992 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3692549 3692702 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3692884 3693238 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild exon 3696400 3696751 . - . gene_id "RvY_04671"; transcript_id "RvY_04671.1"; Scaffold002 rebuild transcript 3695254 3695541 . + . gene_id "RvY_04672"; transcript_id "RvY_04672.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3695254 3695541 . + . gene_id "RvY_04672"; transcript_id "RvY_04672.1"; Scaffold002 rebuild transcript 3698441 3701423 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3698441 3698490 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; Scaffold002 rebuild exon 3700447 3700486 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; Scaffold002 rebuild exon 3700624 3700759 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; Scaffold002 rebuild exon 3700843 3700891 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; Scaffold002 rebuild exon 3700976 3701048 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; Scaffold002 rebuild exon 3701136 3701423 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.1"; Scaffold002 rebuild transcript 3700439 3701423 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3700439 3700486 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.2"; Scaffold002 rebuild exon 3700624 3700759 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.2"; Scaffold002 rebuild exon 3700843 3700891 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.2"; Scaffold002 rebuild exon 3700976 3701048 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.2"; Scaffold002 rebuild exon 3701136 3701423 . - . gene_id "RvY_04673"; transcript_id "RvY_04673.2"; Scaffold002 rebuild transcript 3703429 3703680 . - . gene_id "RvY_04674"; transcript_id "RvY_04674.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3703429 3703680 . - . gene_id "RvY_04674"; transcript_id "RvY_04674.1"; Scaffold002 rebuild transcript 3707262 3712031 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; EC "EC6.3.2.-"; similar_genes "BRE1A_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 3707262 3707555 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3707746 3707890 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3708695 3709133 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3709523 3709575 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3709633 3709736 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3709812 3709952 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3710063 3710177 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3710426 3710643 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3710724 3710896 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3711009 3711125 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3711190 3711426 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3711497 3711774 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild exon 3711844 3712031 . + . gene_id "RvY_04675"; transcript_id "RvY_04675.1"; Scaffold002 rebuild transcript 3712692 3717435 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; gene_name "RING"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)"; Scaffold002 rebuild exon 3712692 3713064 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3713942 3714280 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3714424 3714882 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3714961 3715011 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3715175 3715432 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3715702 3716064 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3716327 3716586 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3716949 3717076 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild exon 3717180 3717435 . + . gene_id "RvY_04676"; transcript_id "RvY_04676.1"; Scaffold002 rebuild transcript 3718574 3719518 . - . gene_id "RvY_04677"; transcript_id "RvY_04677.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3718574 3719518 . - . gene_id "RvY_04677"; transcript_id "RvY_04677.1"; Scaffold002 rebuild transcript 3722526 3723064 . - . gene_id "RvY_04678"; transcript_id "RvY_04678.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3722526 3722748 . - . gene_id "RvY_04678"; transcript_id "RvY_04678.1"; Scaffold002 rebuild exon 3722769 3723064 . - . gene_id "RvY_04678"; transcript_id "RvY_04678.1"; Scaffold002 rebuild transcript 3723587 3723787 . - . gene_id "RvY_04679"; transcript_id "RvY_04679.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3723587 3723787 . - . gene_id "RvY_04679"; transcript_id "RvY_04679.1"; Scaffold002 rebuild transcript 3725849 3726448 . - . gene_id "RvY_04680"; transcript_id "RvY_04680.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3725849 3726211 . - . gene_id "RvY_04680"; transcript_id "RvY_04680.1"; Scaffold002 rebuild exon 3726308 3726448 . - . gene_id "RvY_04680"; transcript_id "RvY_04680.1"; Scaffold002 rebuild transcript 3726882 3727521 . + . gene_id "RvY_04681"; transcript_id "RvY_04681.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3726882 3727149 . + . gene_id "RvY_04681"; transcript_id "RvY_04681.1"; Scaffold002 rebuild exon 3727289 3727521 . + . gene_id "RvY_04681"; transcript_id "RvY_04681.1"; Scaffold002 rebuild transcript 3727521 3727901 . + . gene_id "RvY_04682"; transcript_id "RvY_04682.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3727521 3727580 . + . gene_id "RvY_04682"; transcript_id "RvY_04682.1"; Scaffold002 rebuild exon 3727854 3727901 . + . gene_id "RvY_04682"; transcript_id "RvY_04682.1"; Scaffold002 rebuild transcript 3728576 3731708 . + . gene_id "RvY_04683"; transcript_id "RvY_04683.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 3728576 3728815 . + . gene_id "RvY_04683"; transcript_id "RvY_04683.1"; Scaffold002 rebuild exon 3728871 3729060 . + . gene_id "RvY_04683"; transcript_id "RvY_04683.1"; Scaffold002 rebuild exon 3730103 3730617 . + . gene_id "RvY_04683"; transcript_id "RvY_04683.1"; Scaffold002 rebuild exon 3730705 3730917 . + . gene_id "RvY_04683"; transcript_id "RvY_04683.1"; Scaffold002 rebuild exon 3731181 3731708 . + . gene_id "RvY_04683"; transcript_id "RvY_04683.1"; Scaffold002 rebuild transcript 3734239 3735271 . + . gene_id "RvY_04684"; transcript_id "RvY_04684.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3734239 3734464 . + . gene_id "RvY_04684"; transcript_id "RvY_04684.1"; Scaffold002 rebuild exon 3734559 3734744 . + . gene_id "RvY_04684"; transcript_id "RvY_04684.1"; Scaffold002 rebuild exon 3734816 3734875 . + . gene_id "RvY_04684"; transcript_id "RvY_04684.1"; Scaffold002 rebuild exon 3735042 3735271 . + . gene_id "RvY_04684"; transcript_id "RvY_04684.1"; Scaffold002 rebuild transcript 3736707 3738017 . - . gene_id "RvY_04685"; transcript_id "RvY_04685.1"; gene_name "UBE2R"; annotation "Ubiquitin-conjugating enzyme E2 R1"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K02207"; similar_genes "UB2R1_HUMAN(e-value:4.4e-58;bit-score:222.0)"; Scaffold002 rebuild exon 3736707 3737238 . - . gene_id "RvY_04685"; transcript_id "RvY_04685.1"; Scaffold002 rebuild exon 3737529 3737600 . - . gene_id "RvY_04685"; transcript_id "RvY_04685.1"; Scaffold002 rebuild exon 3737803 3738017 . - . gene_id "RvY_04685"; transcript_id "RvY_04685.1"; Scaffold002 rebuild transcript 3745344 3747865 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; annotation "hypothetical protein."; Pfam "[Aa_trans] Transmembrane amino acid transporter protein"; KO "(1,2)K14995"; similar_genes "(1,2)S38A9_DANRE(e-value:1.7e-08;bit-score:57.0)"; Scaffold002 rebuild exon 3745344 3745816 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3745873 3745936 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3746026 3746311 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3746547 3746855 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3747037 3747248 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3747309 3747457 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3747518 3747607 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild exon 3747691 3747865 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.1"; Scaffold002 rebuild transcript 3745344 3747865 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; annotation "hypothetical protein."; Pfam "[Aa_trans] Transmembrane amino acid transporter protein"; KO "(1,2)K14995"; similar_genes "(1,2)S38A9_DANRE(e-value:1.7e-08;bit-score:57.0)"; Scaffold002 rebuild exon 3745344 3745392 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3745477 3745816 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3745873 3745936 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3746026 3746311 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3746547 3746855 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3747037 3747248 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3747309 3747457 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3747518 3747607 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild exon 3747691 3747865 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.2"; Scaffold002 rebuild transcript 3745892 3747461 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.3"; annotation "hypothetical protein."; Pfam "[Aa_trans] Transmembrane amino acid transporter protein"; KO "(1,2)K14995"; similar_genes "(1,2)S38A9_DANRE(e-value:1.7e-08;bit-score:57.0)"; Scaffold002 rebuild exon 3745892 3745936 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.3"; Scaffold002 rebuild exon 3746026 3746311 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.3"; Scaffold002 rebuild exon 3746547 3746855 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.3"; Scaffold002 rebuild exon 3747037 3747248 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.3"; Scaffold002 rebuild exon 3747309 3747461 . + . gene_id "RvY_04686"; transcript_id "RvY_04686.3"; Scaffold002 rebuild transcript 3749049 3755491 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3749049 3749080 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3749180 3749457 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3749571 3749664 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3749875 3750069 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3750168 3751225 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3751457 3752042 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3752109 3752607 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3752749 3753259 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3753634 3754595 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3754659 3754823 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3754935 3755012 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3755095 3755248 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild exon 3755316 3755491 . + . gene_id "RvY_04687"; transcript_id "RvY_04687.1"; Scaffold002 rebuild transcript 3756552 3756779 . + . gene_id "RvY_04688"; transcript_id "RvY_04688.1"; gene_name "alkPPc"; annotation "hypothetical protein."; Pfam "[Alk_phosphatase] Alkaline phosphatase"; CDD "Alkaline phosphatase homologues."; Scaffold002 rebuild exon 3756552 3756779 . + . gene_id "RvY_04688"; transcript_id "RvY_04688.1"; Scaffold002 rebuild transcript 3759011 3760858 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; annotation "hypothetical protein."; Pfam "[EmrE] Multidrug resistance efflux transporter"; Scaffold002 rebuild exon 3759011 3759167 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3759328 3759616 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3759686 3759846 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3759914 3759972 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3760039 3760164 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3760252 3760441 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3760517 3760606 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild exon 3760707 3760858 . + . gene_id "RvY_04689"; transcript_id "RvY_04689.1"; Scaffold002 rebuild transcript 3761365 3763708 . + . gene_id "RvY_04690"; transcript_id "RvY_04690.1"; gene_name "K01099"; annotation "phosphatidylinositol-bisphosphatase [EC:3.1.3.36]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes."; EC "EC3.1.3.36"; KO "K01099"; similar_genes "INP5E_PANTR(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 3761365 3761959 . + . gene_id "RvY_04690"; transcript_id "RvY_04690.1"; Scaffold002 rebuild exon 3762168 3762763 . + . gene_id "RvY_04690"; transcript_id "RvY_04690.1"; Scaffold002 rebuild exon 3763268 3763708 . + . gene_id "RvY_04690"; transcript_id "RvY_04690.1"; Scaffold002 rebuild transcript 3766896 3772724 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; gene_name "CAMKK"; annotation "Calcium/calmodulin-dependent protein kinase kinase 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.17"; KO "K07359"; similar_genes "KKCC2_MOUSE(e-value:2.8e-51;bit-score:199.0)"; Scaffold002 rebuild exon 3766896 3767004 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3767400 3767733 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3768166 3768266 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3768421 3768532 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3770944 3771116 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3771249 3771348 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3771763 3772095 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild exon 3772328 3772724 . + . gene_id "RvY_04691"; transcript_id "RvY_04691.1"; Scaffold002 rebuild transcript 3773409 3774947 . - . gene_id "RvY_04692"; transcript_id "RvY_04692.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; Scaffold002 rebuild exon 3773409 3774947 . - . gene_id "RvY_04692"; transcript_id "RvY_04692.1"; Scaffold002 rebuild transcript 3775359 3776192 . - . gene_id "RvY_04693"; transcript_id "RvY_04693.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3775359 3775975 . - . gene_id "RvY_04693"; transcript_id "RvY_04693.1"; Scaffold002 rebuild exon 3776042 3776192 . - . gene_id "RvY_04693"; transcript_id "RvY_04693.1"; Scaffold002 rebuild transcript 3776577 3777107 . - . gene_id "RvY_04694"; transcript_id "RvY_04694.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3776577 3777107 . - . gene_id "RvY_04694"; transcript_id "RvY_04694.1"; Scaffold002 rebuild transcript 3777559 3779545 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; gene_name "CRA"; annotation "hypothetical protein."; Pfam "[CLTH] CTLH/CRA C-terminal to LisH motif domain|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)"; similar_genes "FYV10_NEOFI(e-value:5.5e-18;bit-score:89.0)"; Scaffold002 rebuild exon 3777559 3777750 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3777807 3777992 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3778053 3778244 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3778303 3778425 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3778575 3778778 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3778849 3778982 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3779073 3779277 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild exon 3779444 3779545 . + . gene_id "RvY_04695"; transcript_id "RvY_04695.1"; Scaffold002 rebuild transcript 3780631 3786909 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; gene_name "CNGB1"; annotation "cyclic nucleotide gated channel beta 1"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; KO "K04952"; similar_genes "CNG_DROME(e-value:1.5e-22;bit-score:104.0)"; Scaffold002 rebuild exon 3780631 3781033 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3782079 3782301 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3782694 3782961 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3783441 3783990 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3784550 3784977 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3785311 3785567 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3785675 3785831 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3786003 3786483 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild exon 3786539 3786909 . + . gene_id "RvY_04696"; transcript_id "RvY_04696.1"; Scaffold002 rebuild transcript 3787477 3788191 . + . gene_id "RvY_04697"; transcript_id "RvY_04697.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3787477 3787792 . + . gene_id "RvY_04697"; transcript_id "RvY_04697.1"; Scaffold002 rebuild exon 3787944 3788191 . + . gene_id "RvY_04697"; transcript_id "RvY_04697.1"; Scaffold002 rebuild transcript 3789093 3790349 . - . gene_id "RvY_04698"; transcript_id "RvY_04698.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3789093 3789441 . - . gene_id "RvY_04698"; transcript_id "RvY_04698.1"; Scaffold002 rebuild exon 3789651 3789762 . - . gene_id "RvY_04698"; transcript_id "RvY_04698.1"; Scaffold002 rebuild exon 3789832 3789856 . - . gene_id "RvY_04698"; transcript_id "RvY_04698.1"; Scaffold002 rebuild exon 3789952 3790045 . - . gene_id "RvY_04698"; transcript_id "RvY_04698.1"; Scaffold002 rebuild exon 3790147 3790349 . - . gene_id "RvY_04698"; transcript_id "RvY_04698.1"; Scaffold002 rebuild transcript 3791661 3794942 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; gene_name "(1)CNGB3(2)CAP_ED"; annotation "(1)cyclic nucleotide gated channel beta 3(2)hypothetical protein."; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K04953"; similar_genes "CNGB1_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 3791661 3791992 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; Scaffold002 rebuild exon 3792075 3792357 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; Scaffold002 rebuild exon 3792425 3793285 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; Scaffold002 rebuild exon 3793470 3794075 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; Scaffold002 rebuild exon 3794308 3794818 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; Scaffold002 rebuild exon 3794881 3794942 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.1"; Scaffold002 rebuild transcript 3792824 3795357 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.2"; gene_name "(1)CNGB3(2)CAP_ED"; annotation "(1)cyclic nucleotide gated channel beta 3(2)hypothetical protein."; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K04953"; similar_genes "CNGB1_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 3792824 3793285 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.2"; Scaffold002 rebuild exon 3793470 3794075 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.2"; Scaffold002 rebuild exon 3794308 3794818 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.2"; Scaffold002 rebuild exon 3794873 3795357 . + . gene_id "RvY_04699"; transcript_id "RvY_04699.2"; Scaffold002 rebuild transcript 3796170 3797928 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; gene_name "CCNB1IP1"; annotation "E3 ubiquitin-protein ligase CCNP1IP1 [EC:6.3.2.19]"; EC "EC6.3.2.19"; KO "K10639"; Scaffold002 rebuild exon 3796170 3796232 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3796366 3796381 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3796502 3796567 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3796680 3796750 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3796816 3796890 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3796971 3797064 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3797150 3797170 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3797224 3797315 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3797381 3797489 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3797551 3797685 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild exon 3797768 3797928 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.1"; Scaffold002 rebuild transcript 3796170 3797928 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; gene_name "CCNB1IP1"; annotation "E3 ubiquitin-protein ligase CCNP1IP1 [EC:6.3.2.19]"; EC "EC6.3.2.19"; KO "K10639"; Scaffold002 rebuild exon 3796170 3796232 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3796366 3796381 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3796502 3796567 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3796680 3796750 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3796816 3796890 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3796971 3797064 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3797224 3797315 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3797381 3797489 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3797551 3797685 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild exon 3797768 3797928 . + . gene_id "RvY_04700"; transcript_id "RvY_04700.2"; Scaffold002 rebuild transcript 3798339 3799266 . - . gene_id "RvY_04701"; transcript_id "RvY_04701.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3798339 3798398 . - . gene_id "RvY_04701"; transcript_id "RvY_04701.1"; Scaffold002 rebuild exon 3798458 3798596 . - . gene_id "RvY_04701"; transcript_id "RvY_04701.1"; Scaffold002 rebuild exon 3798685 3798733 . - . gene_id "RvY_04701"; transcript_id "RvY_04701.1"; Scaffold002 rebuild exon 3798806 3798878 . - . gene_id "RvY_04701"; transcript_id "RvY_04701.1"; Scaffold002 rebuild exon 3798946 3799266 . - . gene_id "RvY_04701"; transcript_id "RvY_04701.1"; Scaffold002 rebuild transcript 3800174 3819418 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; annotation "hypothetical protein."; Pfam "[FSA_C] Fragile site-associated protein C-terminus"; similar_genes "K1109_MOUSE(e-value:1.0e-08;bit-score:58.0)"; Scaffold002 rebuild exon 3800174 3800549 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3800614 3800754 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3800937 3801123 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3801182 3801275 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3801347 3801537 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3801619 3801843 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3801901 3802555 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3802774 3803061 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3803274 3803591 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3803645 3803956 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3804179 3804421 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3804474 3804763 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3804954 3805332 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3805554 3805959 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3806189 3806802 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3806959 3807504 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3807562 3807889 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3807980 3808385 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3808610 3808991 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3809118 3809653 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3810012 3810454 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3811222 3811672 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3811787 3811964 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3812032 3812361 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3812514 3812781 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3812838 3813125 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3813302 3813673 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3813975 3814334 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3814392 3814608 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3814785 3815239 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3815310 3815507 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3815681 3816100 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3816456 3816798 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3817027 3817388 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3817473 3817644 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3817701 3817921 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3817990 3818250 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3818423 3818587 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3818655 3818936 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3819017 3819122 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild exon 3819211 3819418 . + . gene_id "RvY_04702"; transcript_id "RvY_04702.1"; Scaffold002 rebuild transcript 3825885 3827010 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 3825885 3825929 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; Scaffold002 rebuild exon 3825984 3826300 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; Scaffold002 rebuild exon 3826368 3826578 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; Scaffold002 rebuild exon 3826640 3826704 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; Scaffold002 rebuild exon 3826780 3826861 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; Scaffold002 rebuild exon 3826927 3827010 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.1"; Scaffold002 rebuild transcript 3825235 3826355 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 3825235 3825376 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; Scaffold002 rebuild exon 3825435 3825488 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; Scaffold002 rebuild exon 3825566 3825595 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; Scaffold002 rebuild exon 3825666 3825732 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; Scaffold002 rebuild exon 3825896 3825929 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; Scaffold002 rebuild exon 3825984 3826355 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.2"; Scaffold002 rebuild transcript 3825918 3826653 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.3"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 3825918 3825929 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.3"; Scaffold002 rebuild exon 3825984 3826300 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.3"; Scaffold002 rebuild exon 3826368 3826653 . + . gene_id "RvY_04703"; transcript_id "RvY_04703.3"; Scaffold002 rebuild transcript 3828043 3829223 . + . gene_id "RvY_04704"; transcript_id "RvY_04704.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3828043 3828177 . + . gene_id "RvY_04704"; transcript_id "RvY_04704.1"; Scaffold002 rebuild exon 3828256 3828396 . + . gene_id "RvY_04704"; transcript_id "RvY_04704.1"; Scaffold002 rebuild exon 3829080 3829223 . + . gene_id "RvY_04704"; transcript_id "RvY_04704.1"; Scaffold002 rebuild transcript 3829679 3830282 . + . gene_id "RvY_04705"; transcript_id "RvY_04705.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3829679 3829681 . + . gene_id "RvY_04705"; transcript_id "RvY_04705.1"; Scaffold002 rebuild exon 3829745 3829816 . + . gene_id "RvY_04705"; transcript_id "RvY_04705.1"; Scaffold002 rebuild exon 3829911 3830282 . + . gene_id "RvY_04705"; transcript_id "RvY_04705.1"; Scaffold002 rebuild transcript 3831112 3831400 . + . gene_id "RvY_04706"; transcript_id "RvY_04706.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3831112 3831204 . + . gene_id "RvY_04706"; transcript_id "RvY_04706.1"; Scaffold002 rebuild exon 3831281 3831400 . + . gene_id "RvY_04706"; transcript_id "RvY_04706.1"; Scaffold002 rebuild transcript 3833675 3835414 . - . gene_id "RvY_04707"; transcript_id "RvY_04707.1"; gene_name "COG1819"; annotation "hypothetical protein."; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]"; EC "EC2.4.1.215"; similar_genes "CZOG_SORBI(e-value:4.0e-12;bit-score:69.0)"; Scaffold002 rebuild exon 3833675 3833944 . - . gene_id "RvY_04707"; transcript_id "RvY_04707.1"; Scaffold002 rebuild exon 3834160 3835290 . - . gene_id "RvY_04707"; transcript_id "RvY_04707.1"; Scaffold002 rebuild exon 3835364 3835414 . - . gene_id "RvY_04707"; transcript_id "RvY_04707.1"; Scaffold002 rebuild transcript 3839239 3839799 . + . gene_id "RvY_04708"; transcript_id "RvY_04708.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3839239 3839799 . + . gene_id "RvY_04708"; transcript_id "RvY_04708.1"; Scaffold002 rebuild transcript 3840397 3842077 . - . gene_id "RvY_04709"; transcript_id "RvY_04709.1"; gene_name "UGT73C"; annotation "UDP-glucosyl transferase 73C [EC:2.4.1.-]"; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "UDP-glucoronosyl and UDP-glucosyl transferase."; EC "EC2.4.1.-|EC2.4.1.85"; KO "K13496"; similar_genes "HMNGT_SORBI(e-value:1.0e-12;bit-score:71.0)"; Scaffold002 rebuild exon 3840397 3840684 . - . gene_id "RvY_04709"; transcript_id "RvY_04709.1"; Scaffold002 rebuild exon 3840752 3841876 . - . gene_id "RvY_04709"; transcript_id "RvY_04709.1"; Scaffold002 rebuild exon 3842060 3842077 . - . gene_id "RvY_04709"; transcript_id "RvY_04709.1"; Scaffold002 rebuild transcript 3843528 3846000 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; similar_genes "NHDC1_MACFA(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 3843528 3843824 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3843948 3844162 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3844254 3844527 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3844624 3844730 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3844843 3845018 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3845166 3845348 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3845410 3845497 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild exon 3845565 3846000 . - . gene_id "RvY_04710"; transcript_id "RvY_04710.1"; Scaffold002 rebuild transcript 3848336 3848704 . - . gene_id "RvY_04711"; transcript_id "RvY_04711.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3848336 3848704 . - . gene_id "RvY_04711"; transcript_id "RvY_04711.1"; Scaffold002 rebuild transcript 3849083 3849445 . - . gene_id "RvY_04712"; transcript_id "RvY_04712.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3849083 3849445 . - . gene_id "RvY_04712"; transcript_id "RvY_04712.1"; Scaffold002 rebuild transcript 3849878 3853314 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; gene_name "HK"; annotation "putative Hexokinase-1"; Pfam "[Hexokinase_2] Hexokinase|[Hexokinase_1] Hexokinase"; CDD "Hexokinase [Carbohydrate transport and metabolism]"; EC "EC2.7.1.1"; KO "K00844"; similar_genes "HXK1_PONAB(e-value:1.1e-31;bit-score:134.0)"; Scaffold002 rebuild exon 3849878 3849958 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3850072 3850208 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3850308 3850450 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3850511 3850666 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3850754 3850946 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3851522 3851621 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3851699 3851914 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3852071 3852385 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild exon 3853297 3853314 . - . gene_id "RvY_04713"; transcript_id "RvY_04713.1"; Scaffold002 rebuild transcript 3853664 3854065 . + . gene_id "RvY_04714"; transcript_id "RvY_04714.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3853664 3854065 . + . gene_id "RvY_04714"; transcript_id "RvY_04714.1"; Scaffold002 rebuild transcript 3855684 3858816 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; gene_name "Peptidase_M17"; annotation "putative Putative aminopeptidase W07G4.4"; Pfam "[Peptidase_M17] Cytosol aminopeptidase family, catalytic domain"; CDD "Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically Scaffold002 rebuild exon 3855684 3856061 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3856265 3856473 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3856560 3856740 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3857033 3857118 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3857200 3857375 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3857432 3857556 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3857616 3857742 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3857822 3857904 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3858099 3858173 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3858336 3858489 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild exon 3858608 3858816 . - . gene_id "RvY_04715"; transcript_id "RvY_04715.1"; Scaffold002 rebuild transcript 3861139 3861381 . + . gene_id "RvY_04716"; transcript_id "RvY_04716.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3861139 3861381 . + . gene_id "RvY_04716"; transcript_id "RvY_04716.1"; Scaffold002 rebuild transcript 3861638 3862743 . - . gene_id "RvY_04717"; transcript_id "RvY_04717.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3861638 3862167 . - . gene_id "RvY_04717"; transcript_id "RvY_04717.1"; Scaffold002 rebuild exon 3862250 3862342 . - . gene_id "RvY_04717"; transcript_id "RvY_04717.1"; Scaffold002 rebuild exon 3862533 3862743 . - . gene_id "RvY_04717"; transcript_id "RvY_04717.1"; Scaffold002 rebuild transcript 3863288 3864600 . + . gene_id "RvY_04718"; transcript_id "RvY_04718.1"; gene_name "SFRS1_9"; annotation "putative Splicing factor, arginine/serine-rich 1"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K12890"; similar_genes "SFRS1_XENTR(e-value:4.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 3863288 3863351 . + . gene_id "RvY_04718"; transcript_id "RvY_04718.1"; Scaffold002 rebuild exon 3863484 3863574 . + . gene_id "RvY_04718"; transcript_id "RvY_04718.1"; Scaffold002 rebuild exon 3863649 3863881 . + . gene_id "RvY_04718"; transcript_id "RvY_04718.1"; Scaffold002 rebuild exon 3863962 3864134 . + . gene_id "RvY_04718"; transcript_id "RvY_04718.1"; Scaffold002 rebuild exon 3864283 3864600 . + . gene_id "RvY_04718"; transcript_id "RvY_04718.1"; Scaffold002 rebuild transcript 3864618 3865782 . + . gene_id "RvY_04719"; transcript_id "RvY_04719.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3864618 3864679 . + . gene_id "RvY_04719"; transcript_id "RvY_04719.1"; Scaffold002 rebuild exon 3865653 3865782 . + . gene_id "RvY_04719"; transcript_id "RvY_04719.1"; Scaffold002 rebuild transcript 3865906 3866354 . + . gene_id "RvY_04720"; transcript_id "RvY_04720.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3865906 3865947 . + . gene_id "RvY_04720"; transcript_id "RvY_04720.1"; Scaffold002 rebuild exon 3866079 3866354 . + . gene_id "RvY_04720"; transcript_id "RvY_04720.1"; Scaffold002 rebuild transcript 3866644 3867003 . + . gene_id "RvY_04721"; transcript_id "RvY_04721.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3866644 3867003 . + . gene_id "RvY_04721"; transcript_id "RvY_04721.1"; Scaffold002 rebuild transcript 3867020 3871136 . + . gene_id "RvY_04722"; transcript_id "RvY_04722.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold002 rebuild exon 3867020 3867565 . + . gene_id "RvY_04722"; transcript_id "RvY_04722.1"; Scaffold002 rebuild exon 3868166 3869181 . + . gene_id "RvY_04722"; transcript_id "RvY_04722.1"; Scaffold002 rebuild exon 3869358 3870493 . + . gene_id "RvY_04722"; transcript_id "RvY_04722.1"; Scaffold002 rebuild exon 3870685 3871136 . + . gene_id "RvY_04722"; transcript_id "RvY_04722.1"; Scaffold002 rebuild transcript 3871585 3872160 . - . gene_id "RvY_04723"; transcript_id "RvY_04723.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3871585 3871922 . - . gene_id "RvY_04723"; transcript_id "RvY_04723.1"; Scaffold002 rebuild exon 3872010 3872160 . - . gene_id "RvY_04723"; transcript_id "RvY_04723.1"; Scaffold002 rebuild transcript 3874369 3874746 . - . gene_id "RvY_04724"; transcript_id "RvY_04724.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3874369 3874746 . - . gene_id "RvY_04724"; transcript_id "RvY_04724.1"; Scaffold002 rebuild transcript 3875953 3877666 . - . gene_id "RvY_04725"; transcript_id "RvY_04725.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3875953 3876609 . - . gene_id "RvY_04725"; transcript_id "RvY_04725.1"; Scaffold002 rebuild exon 3876777 3877237 . - . gene_id "RvY_04725"; transcript_id "RvY_04725.1"; Scaffold002 rebuild exon 3877363 3877666 . - . gene_id "RvY_04725"; transcript_id "RvY_04725.1"; Scaffold002 rebuild transcript 3877908 3878705 . + . gene_id "RvY_04726"; transcript_id "RvY_04726.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3877908 3878123 . + . gene_id "RvY_04726"; transcript_id "RvY_04726.1"; Scaffold002 rebuild exon 3878271 3878705 . + . gene_id "RvY_04726"; transcript_id "RvY_04726.1"; Scaffold002 rebuild transcript 3883818 3884471 . - . gene_id "RvY_04727"; transcript_id "RvY_04727.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3883818 3884471 . - . gene_id "RvY_04727"; transcript_id "RvY_04727.1"; Scaffold002 rebuild transcript 3885225 3885446 . + . gene_id "RvY_04728"; transcript_id "RvY_04728.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3885225 3885446 . + . gene_id "RvY_04728"; transcript_id "RvY_04728.1"; Scaffold002 rebuild transcript 3886105 3886524 . + . gene_id "RvY_04729"; transcript_id "RvY_04729.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3886105 3886524 . + . gene_id "RvY_04729"; transcript_id "RvY_04729.1"; Scaffold002 rebuild transcript 3888295 3891777 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3888295 3888411 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3888474 3888598 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3888653 3889011 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3889151 3889306 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3889433 3889572 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3889745 3890113 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3890219 3890629 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3890697 3890756 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3890941 3891168 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3891356 3891443 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild exon 3891605 3891777 . + . gene_id "RvY_04730"; transcript_id "RvY_04730.1"; Scaffold002 rebuild transcript 3892364 3898276 . - . gene_id "RvY_04731"; transcript_id "RvY_04731.1"; gene_name "RAB27A"; annotation "putative Ras-related protein Rab-27A"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07885"; similar_genes "RB27A_MOUSE(e-value:3.1e-46;bit-score:183.0)"; Scaffold002 rebuild exon 3892364 3892577 . - . gene_id "RvY_04731"; transcript_id "RvY_04731.1"; Scaffold002 rebuild exon 3897241 3897468 . - . gene_id "RvY_04731"; transcript_id "RvY_04731.1"; Scaffold002 rebuild exon 3897754 3897830 . - . gene_id "RvY_04731"; transcript_id "RvY_04731.1"; Scaffold002 rebuild exon 3898061 3898276 . - . gene_id "RvY_04731"; transcript_id "RvY_04731.1"; Scaffold002 rebuild transcript 3899107 3900112 . + . gene_id "RvY_04732"; transcript_id "RvY_04732.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3899107 3899236 . + . gene_id "RvY_04732"; transcript_id "RvY_04732.1"; Scaffold002 rebuild exon 3899312 3899428 . + . gene_id "RvY_04732"; transcript_id "RvY_04732.1"; Scaffold002 rebuild exon 3899492 3899771 . + . gene_id "RvY_04732"; transcript_id "RvY_04732.1"; Scaffold002 rebuild exon 3899848 3900112 . + . gene_id "RvY_04732"; transcript_id "RvY_04732.1"; Scaffold002 rebuild transcript 3901055 3901503 . + . gene_id "RvY_04733"; transcript_id "RvY_04733.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3901055 3901161 . + . gene_id "RvY_04733"; transcript_id "RvY_04733.1"; Scaffold002 rebuild exon 3901236 3901503 . + . gene_id "RvY_04733"; transcript_id "RvY_04733.1"; Scaffold002 rebuild transcript 3902821 3903027 . + . gene_id "RvY_04734"; transcript_id "RvY_04734.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3902821 3903027 . + . gene_id "RvY_04734"; transcript_id "RvY_04734.1"; Scaffold002 rebuild transcript 3903807 3906038 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14003"; Scaffold002 rebuild exon 3903807 3904027 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; Scaffold002 rebuild exon 3904351 3904882 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; Scaffold002 rebuild exon 3904951 3905034 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; Scaffold002 rebuild exon 3905133 3905377 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; Scaffold002 rebuild exon 3905467 3905830 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; Scaffold002 rebuild exon 3905889 3906038 . - . gene_id "RvY_04735"; transcript_id "RvY_04735.1"; Scaffold002 rebuild transcript 3907573 3912367 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; gene_name "GLDC"; annotation "Glycine dehydrogenase [decarboxylating]"; Pfam "[Beta_elim_lyase] Beta-eliminating lyase|[GDC-P] Glycine cleavage system P-protein"; CDD "glycine dehydrogenase; Provisional"; EC "EC1.4.4.2"; KO "K00281"; similar_genes "GCSP_SHELP(e-value:7.1e-103;bit-score:371.0)"; Scaffold002 rebuild exon 3907573 3907914 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3908104 3908182 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3908253 3908637 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3908931 3909087 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3909189 3909385 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3909472 3909568 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3909680 3910294 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3910476 3910618 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3910719 3911000 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3911113 3911295 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3911362 3911513 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3911592 3911783 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3911878 3911985 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild exon 3912069 3912367 . + . gene_id "RvY_04736"; transcript_id "RvY_04736.1"; Scaffold002 rebuild transcript 3912944 3913630 . - . gene_id "RvY_04737"; transcript_id "RvY_04737.1"; gene_name "UBC"; annotation "putative Ubiquitin"; Pfam "[TUG] GLUT4 regulating protein TUG|[DUF2407] DUF2407 ubiquitin-like domain|[ubiquitin] Ubiquitin family|[DUF2870]|[FlgD_ig] FlgD Ig-like domain|[Rad60-SLD_2] Ubiquitin-2 like Rad60 SUMO-like|[Telomere_Sde2] Telomere stability and silencing|[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)"; KO "K08770"; similar_genes "UBIQ_MACFA(e-value:6.4e-36;bit-score:148.0)"; Scaffold002 rebuild exon 3912944 3913630 . - . gene_id "RvY_04737"; transcript_id "RvY_04737.1"; Scaffold002 rebuild transcript 3914519 3915871 . + . gene_id "RvY_04738"; transcript_id "RvY_04738.1"; annotation "hypothetical protein."; Pfam "[PRELI] PRELI-like family"; Scaffold002 rebuild exon 3914519 3914658 . + . gene_id "RvY_04738"; transcript_id "RvY_04738.1"; Scaffold002 rebuild exon 3914745 3914964 . + . gene_id "RvY_04738"; transcript_id "RvY_04738.1"; Scaffold002 rebuild exon 3915497 3915871 . + . gene_id "RvY_04738"; transcript_id "RvY_04738.1"; Scaffold002 rebuild transcript 3916965 3917784 . + . gene_id "RvY_04739"; transcript_id "RvY_04739.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3916965 3917016 . + . gene_id "RvY_04739"; transcript_id "RvY_04739.1"; Scaffold002 rebuild exon 3917247 3917411 . + . gene_id "RvY_04739"; transcript_id "RvY_04739.1"; Scaffold002 rebuild exon 3917483 3917563 . + . gene_id "RvY_04739"; transcript_id "RvY_04739.1"; Scaffold002 rebuild exon 3917657 3917784 . + . gene_id "RvY_04739"; transcript_id "RvY_04739.1"; Scaffold002 rebuild transcript 3918470 3919351 . + . gene_id "RvY_04740"; transcript_id "RvY_04740.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3918470 3918641 . + . gene_id "RvY_04740"; transcript_id "RvY_04740.1"; Scaffold002 rebuild exon 3918757 3918894 . + . gene_id "RvY_04740"; transcript_id "RvY_04740.1"; Scaffold002 rebuild exon 3918997 3919077 . + . gene_id "RvY_04740"; transcript_id "RvY_04740.1"; Scaffold002 rebuild exon 3919218 3919351 . + . gene_id "RvY_04740"; transcript_id "RvY_04740.1"; Scaffold002 rebuild transcript 3920098 3921848 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; gene_name "SET"; annotation "putative SET and MYND domain-containing protein 5"; Pfam "[SET]"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; similar_genes "SMYD5_CHICK(e-value:4.0e-27;bit-score:119.0)"; Scaffold002 rebuild exon 3920098 3920139 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; Scaffold002 rebuild exon 3920238 3920780 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; Scaffold002 rebuild exon 3920859 3920992 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; Scaffold002 rebuild exon 3921116 3921273 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; Scaffold002 rebuild exon 3921385 3921550 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; Scaffold002 rebuild exon 3921713 3921848 . + . gene_id "RvY_04741"; transcript_id "RvY_04741.1"; Scaffold002 rebuild transcript 3923714 3924127 . - . gene_id "RvY_04742"; transcript_id "RvY_04742.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3923714 3924127 . - . gene_id "RvY_04742"; transcript_id "RvY_04742.1"; Scaffold002 rebuild transcript 3924306 3932980 . - . gene_id "RvY_04743"; transcript_id "RvY_04743.1"; gene_name "FGF"; annotation "fibroblast growth factor"; Pfam "[FGF] Fibroblast growth factor"; KO "K04358"; Scaffold002 rebuild exon 3924306 3924632 . - . gene_id "RvY_04743"; transcript_id "RvY_04743.1"; Scaffold002 rebuild exon 3925798 3925901 . - . gene_id "RvY_04743"; transcript_id "RvY_04743.1"; Scaffold002 rebuild exon 3928877 3929207 . - . gene_id "RvY_04743"; transcript_id "RvY_04743.1"; Scaffold002 rebuild exon 3929320 3929377 . - . gene_id "RvY_04743"; transcript_id "RvY_04743.1"; Scaffold002 rebuild exon 3932967 3932980 . - . gene_id "RvY_04743"; transcript_id "RvY_04743.1"; Scaffold002 rebuild transcript 3937126 3938595 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3937126 3937322 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.1"; Scaffold002 rebuild exon 3938361 3938595 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.1"; Scaffold002 rebuild transcript 3937126 3938595 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3937126 3937169 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.2"; Scaffold002 rebuild exon 3937224 3937322 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.2"; Scaffold002 rebuild exon 3938361 3938595 . - . gene_id "RvY_04744"; transcript_id "RvY_04744.2"; Scaffold002 rebuild transcript 3939179 3939956 . + . gene_id "RvY_04745"; transcript_id "RvY_04745.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3939179 3939726 . + . gene_id "RvY_04745"; transcript_id "RvY_04745.1"; Scaffold002 rebuild exon 3939803 3939956 . + . gene_id "RvY_04745"; transcript_id "RvY_04745.1"; Scaffold002 rebuild transcript 3940455 3941662 . + . gene_id "RvY_04746"; transcript_id "RvY_04746.1"; gene_name "pcm"; annotation "Protein-L-isoaspartate(D-aspartate) O-methyltransferase"; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[PCMT] Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)"; CDD "Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)."; EC "EC2.1.1.77"; KO "K00573"; similar_genes "PIMT_DANRE(e-value:9.9e-75;bit-score:277.0)"; Scaffold002 rebuild exon 3940455 3940757 . + . gene_id "RvY_04746"; transcript_id "RvY_04746.1"; Scaffold002 rebuild exon 3941009 3941090 . + . gene_id "RvY_04746"; transcript_id "RvY_04746.1"; Scaffold002 rebuild exon 3941187 3941662 . + . gene_id "RvY_04746"; transcript_id "RvY_04746.1"; Scaffold002 rebuild transcript 3942299 3942766 . + . gene_id "RvY_04747"; transcript_id "RvY_04747.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3942299 3942766 . + . gene_id "RvY_04747"; transcript_id "RvY_04747.1"; Scaffold002 rebuild transcript 3942949 3943951 . - . gene_id "RvY_04748"; transcript_id "RvY_04748.1"; gene_name "COG0790"; annotation "hypothetical protein."; CDD "FOG: TPR repeat, SEL1 subfamily [General function prediction only]"; similar_genes "C1365_DROME(e-value:3.7e-19;bit-score:93.0)"; Scaffold002 rebuild exon 3942949 3943442 . - . gene_id "RvY_04748"; transcript_id "RvY_04748.1"; Scaffold002 rebuild exon 3943551 3943691 . - . gene_id "RvY_04748"; transcript_id "RvY_04748.1"; Scaffold002 rebuild exon 3943852 3943951 . - . gene_id "RvY_04748"; transcript_id "RvY_04748.1"; Scaffold002 rebuild transcript 3944774 3945085 . + . gene_id "RvY_04749"; transcript_id "RvY_04749.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3944774 3945085 . + . gene_id "RvY_04749"; transcript_id "RvY_04749.1"; Scaffold002 rebuild transcript 3945494 3948235 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold002 rebuild exon 3945494 3945575 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild exon 3946039 3946229 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild exon 3946404 3946433 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild exon 3946510 3946634 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild exon 3946977 3947292 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild exon 3947353 3947587 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild exon 3947889 3948235 . + . gene_id "RvY_04750"; transcript_id "RvY_04750.1"; Scaffold002 rebuild transcript 3948584 3950642 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; gene_name "punA"; annotation "putative Purine nucleoside phosphorylase 1"; Pfam "[PNP_UDP_1] Phosphorylase superfamily"; CDD "purine nucleoside phosphorylase; Provisional"; EC "EC2.4.2.1"; KO "K03783"; similar_genes "PUNA_BACSU(e-value:1.0e-27;bit-score:121.0)"; Scaffold002 rebuild exon 3948584 3948692 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3948919 3949018 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3949128 3949318 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3949380 3949487 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3949604 3949671 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3949740 3949843 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3949910 3949937 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3950036 3950061 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3950277 3950316 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3950427 3950508 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild exon 3950587 3950642 . - . gene_id "RvY_04751"; transcript_id "RvY_04751.1"; Scaffold002 rebuild transcript 3951222 3953713 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; gene_name "ERG3"; annotation "hypothetical protein."; Pfam "[FA_hydroxylase] Fatty acid hydroxylase superfamily"; CDD "Sterol desaturase [Lipid metabolism]"; KO "K15537"; similar_genes "TM195_DANRE(e-value:8.2e-17;bit-score:85.0)"; Scaffold002 rebuild exon 3951222 3951876 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild exon 3951970 3952113 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild exon 3952185 3952315 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild exon 3952392 3952438 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild exon 3952513 3952664 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild exon 3953294 3953421 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild exon 3953486 3953713 . - . gene_id "RvY_04752"; transcript_id "RvY_04752.1"; Scaffold002 rebuild transcript 3954015 3954197 . - . gene_id "RvY_04753"; transcript_id "RvY_04753.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3954015 3954197 . - . gene_id "RvY_04753"; transcript_id "RvY_04753.1"; Scaffold002 rebuild transcript 3954538 3957386 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; gene_name "DM13"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9."; Scaffold002 rebuild exon 3954538 3954601 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3954664 3954906 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3955019 3955097 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3955181 3955310 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3955386 3955648 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3955725 3955897 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3955968 3956071 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3956214 3956636 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3956700 3956768 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3956839 3956977 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3957050 3957172 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild exon 3957235 3957386 . + . gene_id "RvY_04754"; transcript_id "RvY_04754.1"; Scaffold002 rebuild transcript 3957849 3960160 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; gene_name "K01103"; annotation "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"; Pfam "[6PF2K] 6-phosphofructo-2-kinase|[His_Phos_1] Histidine phosphatase superfamily (branch 1)|[AAA_33] AAA domain"; CDD "6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif."; EC "EC2.7.1.105|EC3.1.3.46"; KO "K01103"; similar_genes "F26L_CHICK(e-value:2.0e-94;bit-score:343.0)"; Scaffold002 rebuild exon 3957849 3957880 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3957943 3958040 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3958344 3958639 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3958758 3958804 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3958886 3959239 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3959380 3959640 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3959699 3959851 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild exon 3959917 3960160 . - . gene_id "RvY_04755"; transcript_id "RvY_04755.1"; Scaffold002 rebuild transcript 3961897 3962155 . + . gene_id "RvY_04756"; transcript_id "RvY_04756.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3961897 3961992 . + . gene_id "RvY_04756"; transcript_id "RvY_04756.1"; Scaffold002 rebuild exon 3961997 3962155 . + . gene_id "RvY_04756"; transcript_id "RvY_04756.1"; Scaffold002 rebuild transcript 3961977 3962381 . - . gene_id "RvY_04757"; transcript_id "RvY_04757.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3961977 3962381 . - . gene_id "RvY_04757"; transcript_id "RvY_04757.1"; Scaffold002 rebuild transcript 3962434 3962637 . + . gene_id "RvY_04758"; transcript_id "RvY_04758.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3962434 3962637 . + . gene_id "RvY_04758"; transcript_id "RvY_04758.1"; Scaffold002 rebuild transcript 3962914 3967381 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; Scaffold002 rebuild exon 3962914 3963071 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3963134 3963551 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3963866 3965232 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3965458 3965961 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3966048 3966176 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3966311 3966430 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3966494 3966685 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild exon 3966937 3967381 . - . gene_id "RvY_04759"; transcript_id "RvY_04759.1"; Scaffold002 rebuild transcript 3968374 3969129 . + . gene_id "RvY_04760"; transcript_id "RvY_04760.1"; gene_name "(1)PRK05648"; annotation "hypothetical protein."; CDD "(1)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold002 rebuild exon 3968374 3969129 . + . gene_id "RvY_04760"; transcript_id "RvY_04760.1"; Scaffold002 rebuild transcript 3968609 3969154 . + . gene_id "RvY_04760"; transcript_id "RvY_04760.2"; gene_name "(1)PRK05648"; annotation "hypothetical protein."; CDD "(1)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold002 rebuild exon 3968609 3969154 . + . gene_id "RvY_04760"; transcript_id "RvY_04760.2"; Scaffold002 rebuild transcript 3969570 3969926 . - . gene_id "RvY_04761"; transcript_id "RvY_04761.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3969570 3969804 . - . gene_id "RvY_04761"; transcript_id "RvY_04761.1"; Scaffold002 rebuild exon 3969877 3969926 . - . gene_id "RvY_04761"; transcript_id "RvY_04761.1"; Scaffold002 framed transcript 3971845 3972841 . + . gene_id "RvY_04762"; transcript_id "RvY_04762.1"; annotation "hypothetical protein."; Scaffold002 framed exon 3971845 3972064 . + . gene_id "RvY_04762"; transcript_id "RvY_04762.1"; Scaffold002 framed exon 3972177 3972841 . + . gene_id "RvY_04762"; transcript_id "RvY_04762.1"; Scaffold002 rebuild transcript 3974574 3975053 . + . gene_id "RvY_04763"; transcript_id "RvY_04763.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3974574 3974859 . + . gene_id "RvY_04763"; transcript_id "RvY_04763.1"; Scaffold002 rebuild exon 3974965 3975053 . + . gene_id "RvY_04763"; transcript_id "RvY_04763.1"; Scaffold002 rebuild transcript 3976837 3979893 . - . gene_id "RvY_04764"; transcript_id "RvY_04764.1"; gene_name "PDEase_I"; annotation "hypothetical protein."; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; Scaffold002 rebuild exon 3976837 3977721 . - . gene_id "RvY_04764"; transcript_id "RvY_04764.1"; Scaffold002 rebuild exon 3977959 3978249 . - . gene_id "RvY_04764"; transcript_id "RvY_04764.1"; Scaffold002 rebuild exon 3978332 3978708 . - . gene_id "RvY_04764"; transcript_id "RvY_04764.1"; Scaffold002 rebuild exon 3978897 3979394 . - . gene_id "RvY_04764"; transcript_id "RvY_04764.1"; Scaffold002 rebuild exon 3979542 3979893 . - . gene_id "RvY_04764"; transcript_id "RvY_04764.1"; Scaffold002 rebuild transcript 3980186 3981010 . - . gene_id "RvY_04765"; transcript_id "RvY_04765.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3980186 3980198 . - . gene_id "RvY_04765"; transcript_id "RvY_04765.1"; Scaffold002 rebuild exon 3980313 3981010 . - . gene_id "RvY_04765"; transcript_id "RvY_04765.1"; Scaffold002 rebuild transcript 3981393 3982678 . - . gene_id "RvY_04766"; transcript_id "RvY_04766.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold002 rebuild exon 3981393 3981637 . - . gene_id "RvY_04766"; transcript_id "RvY_04766.1"; Scaffold002 rebuild exon 3981750 3981855 . - . gene_id "RvY_04766"; transcript_id "RvY_04766.1"; Scaffold002 rebuild exon 3982052 3982280 . - . gene_id "RvY_04766"; transcript_id "RvY_04766.1"; Scaffold002 rebuild exon 3982383 3982488 . - . gene_id "RvY_04766"; transcript_id "RvY_04766.1"; Scaffold002 rebuild exon 3982564 3982678 . - . gene_id "RvY_04766"; transcript_id "RvY_04766.1"; Scaffold002 rebuild transcript 3983260 3984326 . - . gene_id "RvY_04767"; transcript_id "RvY_04767.1"; gene_name "K00310"; annotation "pyrimidodiazepine synthase [EC:1.5.4.1]"; Pfam "[Glutaredoxin]|[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold002 rebuild exon 3983260 3983531 . - . gene_id "RvY_04767"; transcript_id "RvY_04767.1"; Scaffold002 rebuild exon 3983594 3983699 . - . gene_id "RvY_04767"; transcript_id "RvY_04767.1"; Scaffold002 rebuild exon 3983784 3984000 . - . gene_id "RvY_04767"; transcript_id "RvY_04767.1"; Scaffold002 rebuild exon 3984110 3984215 . - . gene_id "RvY_04767"; transcript_id "RvY_04767.1"; Scaffold002 rebuild exon 3984284 3984326 . - . gene_id "RvY_04767"; transcript_id "RvY_04767.1"; Scaffold002 rebuild transcript 3985057 3986281 . - . gene_id "RvY_04768"; transcript_id "RvY_04768.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3985057 3985321 . - . gene_id "RvY_04768"; transcript_id "RvY_04768.1"; Scaffold002 rebuild exon 3985512 3986281 . - . gene_id "RvY_04768"; transcript_id "RvY_04768.1"; Scaffold002 rebuild transcript 3987460 3987729 . - . gene_id "RvY_04769"; transcript_id "RvY_04769.1"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold002 rebuild exon 3987460 3987729 . - . gene_id "RvY_04769"; transcript_id "RvY_04769.1"; Scaffold002 rebuild transcript 3988054 3990879 . - . gene_id "RvY_04770"; transcript_id "RvY_04770.1"; gene_name "K00854"; annotation "Xylulose kinase"; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain|[FGGY_C] FGGY family of carbohydrate kinases, C-terminal domain"; CDD "Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]"; EC "EC2.7.1.17"; KO "K00854"; similar_genes "XYLB_BOVIN(e-value:1.4e-69;bit-score:260.0)"; Scaffold002 rebuild exon 3988054 3988480 . - . gene_id "RvY_04770"; transcript_id "RvY_04770.1"; Scaffold002 rebuild exon 3988840 3989194 . - . gene_id "RvY_04770"; transcript_id "RvY_04770.1"; Scaffold002 rebuild exon 3989292 3989711 . - . gene_id "RvY_04770"; transcript_id "RvY_04770.1"; Scaffold002 rebuild exon 3989988 3990283 . - . gene_id "RvY_04770"; transcript_id "RvY_04770.1"; Scaffold002 rebuild exon 3990755 3990879 . - . gene_id "RvY_04770"; transcript_id "RvY_04770.1"; Scaffold002 rebuild transcript 3991118 3991516 . + . gene_id "RvY_04771"; transcript_id "RvY_04771.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3991118 3991516 . + . gene_id "RvY_04771"; transcript_id "RvY_04771.1"; Scaffold002 rebuild transcript 3992553 3995300 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; gene_name "GPS1"; annotation "COP9 signalosome complex subunit 1"; Pfam "[RPN7] 26S proteasome subunit RPN7|[PCI]"; KO "K12175"; similar_genes "CSN1_DROME(e-value:5.2e-10;bit-score:62.0)"; Scaffold002 rebuild exon 3992553 3992921 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3993264 3993448 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3993525 3993677 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3993756 3993891 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3994011 3994094 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3994164 3994379 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3994458 3994552 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3994625 3994730 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3994817 3995170 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild exon 3995259 3995300 . + . gene_id "RvY_04772"; transcript_id "RvY_04772.1"; Scaffold002 rebuild transcript 3995618 3995689 . - . gene_id "RvY_04773"; transcript_id "RvY_04773.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 3995618 3995689 . - . gene_id "RvY_04773"; transcript_id "RvY_04773.1"; Scaffold002 rebuild transcript 3995903 3997595 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; gene_name "dys1"; annotation "Probable deoxyhypusine synthase"; Pfam "[DS] Deoxyhypusine synthase"; EC "EC2.5.1.46"; KO "K00809"; similar_genes "DHYS_DROME(e-value:6.8e-114;bit-score:407.0)"; Scaffold002 rebuild exon 3995903 3996130 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3996200 3996337 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3996491 3996709 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3996790 3996876 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3996950 3997055 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3997139 3997242 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3997312 3997437 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild exon 3997509 3997595 . + . gene_id "RvY_04774"; transcript_id "RvY_04774.1"; Scaffold002 rebuild transcript 3999310 4001261 . + . gene_id "RvY_04775"; transcript_id "RvY_04775.1"; annotation "hypothetical protein."; Pfam "[JmjC] JmjC domain, hydroxylase"; Scaffold002 rebuild exon 3999310 3999437 . + . gene_id "RvY_04775"; transcript_id "RvY_04775.1"; Scaffold002 rebuild exon 3999760 4000175 . + . gene_id "RvY_04775"; transcript_id "RvY_04775.1"; Scaffold002 rebuild exon 4000235 4000494 . + . gene_id "RvY_04775"; transcript_id "RvY_04775.1"; Scaffold002 rebuild exon 4000706 4001151 . + . gene_id "RvY_04775"; transcript_id "RvY_04775.1"; Scaffold002 rebuild exon 4001249 4001261 . + . gene_id "RvY_04775"; transcript_id "RvY_04775.1"; Scaffold002 rebuild transcript 4001768 4003068 . - . gene_id "RvY_04776"; transcript_id "RvY_04776.1"; gene_name "cyt_b5_reduct_like"; annotation "hypothetical protein."; Pfam "[FAD_binding_6] Oxidoreductase FAD-binding domain|[NAD_binding_6] Ferric reductase NAD binding domain|[NAD_binding_1] Oxidoreductase NAD-binding domain"; CDD "Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH."; EC "EC1.6.2.2"; similar_genes "NB5R3_BOVIN(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 4001768 4001859 . - . gene_id "RvY_04776"; transcript_id "RvY_04776.1"; Scaffold002 rebuild exon 4001930 4002217 . - . gene_id "RvY_04776"; transcript_id "RvY_04776.1"; Scaffold002 rebuild exon 4002316 4002525 . - . gene_id "RvY_04776"; transcript_id "RvY_04776.1"; Scaffold002 rebuild exon 4002654 4003068 . - . gene_id "RvY_04776"; transcript_id "RvY_04776.1"; Scaffold002 rebuild transcript 4005045 4006913 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; annotation "hypothetical protein."; Pfam "[GKAP] Guanylate-kinase-associated protein (GKAP) protein"; Scaffold002 rebuild exon 4005045 4005117 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild exon 4005270 4005365 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild exon 4005513 4005731 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild exon 4005817 4005972 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild exon 4006053 4006213 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild exon 4006513 4006641 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild exon 4006746 4006913 . + . gene_id "RvY_04777"; transcript_id "RvY_04777.1"; Scaffold002 rebuild transcript 4009058 4013105 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; annotation "hypothetical protein."; Pfam "[DUF4209]"; Scaffold002 rebuild exon 4009058 4009134 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4009201 4009346 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4009426 4009540 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4009617 4009722 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4009815 4009844 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4009931 4009996 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4010078 4010373 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4010455 4010745 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4010810 4011047 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild exon 4013073 4013105 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.1"; Scaffold002 rebuild transcript 4009340 4012179 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; annotation "hypothetical protein."; Pfam "[DUF4209]"; Scaffold002 rebuild exon 4009340 4009346 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4009426 4009540 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4009617 4009722 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4009815 4009844 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4009931 4009996 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4010078 4010373 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4010455 4010745 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4010810 4011047 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild exon 4012123 4012179 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.2"; Scaffold002 rebuild transcript 4009819 4012179 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; annotation "hypothetical protein."; Pfam "[DUF4209]"; Scaffold002 rebuild exon 4009819 4009863 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; Scaffold002 rebuild exon 4009931 4009996 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; Scaffold002 rebuild exon 4010078 4010373 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; Scaffold002 rebuild exon 4010455 4010745 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; Scaffold002 rebuild exon 4010810 4011047 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; Scaffold002 rebuild exon 4012123 4012179 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.3"; Scaffold002 rebuild transcript 4007979 4009305 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.4"; annotation "hypothetical protein."; Pfam "[DUF4209]"; Scaffold002 rebuild exon 4007979 4008183 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.4"; Scaffold002 rebuild exon 4008403 4008602 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.4"; Scaffold002 rebuild exon 4008669 4008966 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.4"; Scaffold002 rebuild exon 4009037 4009134 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.4"; Scaffold002 rebuild exon 4009201 4009305 . + . gene_id "RvY_04778"; transcript_id "RvY_04778.4"; Scaffold002 rebuild transcript 4012333 4012722 . - . gene_id "RvY_04779"; transcript_id "RvY_04779.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4012333 4012476 . - . gene_id "RvY_04779"; transcript_id "RvY_04779.1"; Scaffold002 rebuild exon 4012642 4012722 . - . gene_id "RvY_04779"; transcript_id "RvY_04779.1"; Scaffold002 rebuild transcript 4013208 4022649 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; gene_name "NR_LBD_ROR_like"; annotation "Probable nuclear hormone receptor HR3"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily. The ligand binding domain (LBD) of Retinoid-related orphan receptors (RORs): Retinoid-related orphan receptors (RORs) are transcription factors belonging to the nuclear receptor superfamily. RORs are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. Transcription regulation by RORs is mediated through certain corepressors, as well as coactivators. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma that differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum, particularly in the regulation of the maturation and survival of Purkinje cells. RORbeta expression is largely restricted to several regions of the brain, the retina, and pineal gland. RORgamma is essential for lymph node organogenesis. Recently, it has been su ggested that cholesterol or a cholesterol derivative is the natural ligand of RORalpha. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, retinoid-related orphan receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; KO "K14033"; similar_genes "HR3_DROME(e-value:2.8e-51;bit-score:199.0)"; Scaffold002 rebuild exon 4013208 4013241 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4019687 4019772 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4019990 4020020 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4020098 4020208 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4020290 4020503 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4020917 4021191 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4021334 4021464 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4021572 4021704 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4021785 4021886 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4022039 4022161 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild exon 4022387 4022649 . + . gene_id "RvY_04780"; transcript_id "RvY_04780.1"; Scaffold002 rebuild transcript 4013786 4014178 . - . gene_id "RvY_04781"; transcript_id "RvY_04781.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4013786 4014178 . - . gene_id "RvY_04781"; transcript_id "RvY_04781.1"; Scaffold002 rebuild transcript 4023727 4024330 . - . gene_id "RvY_04782"; transcript_id "RvY_04782.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4023727 4023743 . - . gene_id "RvY_04782"; transcript_id "RvY_04782.1"; Scaffold002 rebuild exon 4023817 4023887 . - . gene_id "RvY_04782"; transcript_id "RvY_04782.1"; Scaffold002 rebuild exon 4023978 4024051 . - . gene_id "RvY_04782"; transcript_id "RvY_04782.1"; Scaffold002 rebuild exon 4024196 4024330 . - . gene_id "RvY_04782"; transcript_id "RvY_04782.1"; Scaffold002 rebuild transcript 4025496 4026012 . + . gene_id "RvY_04783"; transcript_id "RvY_04783.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4025496 4025502 . + . gene_id "RvY_04783"; transcript_id "RvY_04783.1"; Scaffold002 rebuild exon 4025831 4026012 . + . gene_id "RvY_04783"; transcript_id "RvY_04783.1"; Scaffold002 rebuild transcript 4026487 4027075 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4026487 4026506 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.1"; Scaffold002 rebuild exon 4026603 4026673 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.1"; Scaffold002 rebuild exon 4026767 4026861 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.1"; Scaffold002 rebuild exon 4026956 4027075 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.1"; Scaffold002 rebuild transcript 4026487 4027075 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4026487 4026506 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.2"; Scaffold002 rebuild exon 4026603 4026673 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.2"; Scaffold002 rebuild exon 4026767 4026858 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.2"; Scaffold002 rebuild exon 4026956 4027075 . - . gene_id "RvY_04784"; transcript_id "RvY_04784.2"; Scaffold002 rebuild transcript 4027779 4029478 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4027779 4028020 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; Scaffold002 rebuild exon 4028088 4028244 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; Scaffold002 rebuild exon 4028301 4028480 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; Scaffold002 rebuild exon 4028558 4028756 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; Scaffold002 rebuild exon 4028815 4028885 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; Scaffold002 rebuild exon 4029083 4029478 . - . gene_id "RvY_04785"; transcript_id "RvY_04785.1"; Scaffold002 rebuild transcript 4032000 4032511 . + . gene_id "RvY_04786"; transcript_id "RvY_04786.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4032000 4032094 . + . gene_id "RvY_04786"; transcript_id "RvY_04786.1"; Scaffold002 rebuild exon 4032337 4032511 . + . gene_id "RvY_04786"; transcript_id "RvY_04786.1"; Scaffold002 rebuild transcript 4033966 4035817 . - . gene_id "RvY_04787"; transcript_id "RvY_04787.1"; gene_name "Tdh"; annotation "hypothetical protein."; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]"; EC "EC1.-.-.-"; similar_genes "YHG1_SCHPO(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 4033966 4034347 . - . gene_id "RvY_04787"; transcript_id "RvY_04787.1"; Scaffold002 rebuild exon 4034556 4034817 . - . gene_id "RvY_04787"; transcript_id "RvY_04787.1"; Scaffold002 rebuild exon 4034920 4034988 . - . gene_id "RvY_04787"; transcript_id "RvY_04787.1"; Scaffold002 rebuild exon 4035049 4035570 . - . gene_id "RvY_04787"; transcript_id "RvY_04787.1"; Scaffold002 rebuild exon 4035631 4035817 . - . gene_id "RvY_04787"; transcript_id "RvY_04787.1"; Scaffold002 rebuild transcript 4036616 4037462 . + . gene_id "RvY_04788"; transcript_id "RvY_04788.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4036616 4036915 . + . gene_id "RvY_04788"; transcript_id "RvY_04788.1"; Scaffold002 rebuild exon 4037055 4037462 . + . gene_id "RvY_04788"; transcript_id "RvY_04788.1"; Scaffold002 rebuild transcript 4037748 4039215 . - . gene_id "RvY_04789"; transcript_id "RvY_04789.1"; gene_name "HSD3B"; annotation "3beta-hydroxy-delta5-steroid dehydrogenase / steroid delta-isomerase [EC:1.1.1.145 5.3.3.1]"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|[adh_short] short chain dehydrogenase|[KR]|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; EC "EC1.1.1.145|EC5.3.3.1"; KO "K00070"; Scaffold002 rebuild exon 4037748 4038535 . - . gene_id "RvY_04789"; transcript_id "RvY_04789.1"; Scaffold002 rebuild exon 4038651 4038809 . - . gene_id "RvY_04789"; transcript_id "RvY_04789.1"; Scaffold002 rebuild exon 4039038 4039215 . - . gene_id "RvY_04789"; transcript_id "RvY_04789.1"; Scaffold002 rebuild transcript 4039619 4039885 . + . gene_id "RvY_04790"; transcript_id "RvY_04790.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4039619 4039885 . + . gene_id "RvY_04790"; transcript_id "RvY_04790.1"; Scaffold002 rebuild transcript 4041783 4043362 . + . gene_id "RvY_04791"; transcript_id "RvY_04791.1"; gene_name "K01855"; annotation "hypothetical protein."; Pfam "[PseudoU_synth_1] tRNA pseudouridine synthase"; CDD "PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like. This group consists of eukaryotic pseudouridine synthases similar to S. cerevisiae Pus3p, mouse Pus3p and, human PUS2. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse Pus3p has been shown to makes psi38 and, possibly also psi 39, in tRNAs. Psi38 and psi39 are highly conserved in tRNAs from eubacteria, archea and eukarya."; EC "EC5.4.99.-"; KO "K01855"; similar_genes "PUS3_BOVIN(e-value:1.3e-25;bit-score:114.0)"; Scaffold002 rebuild exon 4041783 4042286 . + . gene_id "RvY_04791"; transcript_id "RvY_04791.1"; Scaffold002 rebuild exon 4042346 4043362 . + . gene_id "RvY_04791"; transcript_id "RvY_04791.1"; Scaffold002 rebuild transcript 4044167 4045192 . + . gene_id "RvY_04792"; transcript_id "RvY_04792.1"; gene_name "DSRM"; annotation "hypothetical protein."; Pfam "[dsrm] Double-stranded RNA binding motif"; CDD "Double-stranded RNA binding motif."; Scaffold002 rebuild exon 4044167 4045192 . + . gene_id "RvY_04792"; transcript_id "RvY_04792.1"; Scaffold002 rebuild transcript 4045388 4049179 . - . gene_id "RvY_04793"; transcript_id "RvY_04793.1"; annotation "hypothetical protein."; Pfam "[NRDE-2] NRDE-2, necessary for RNA interference"; similar_genes "CN102_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 4045388 4045525 . - . gene_id "RvY_04793"; transcript_id "RvY_04793.1"; Scaffold002 rebuild exon 4045586 4045785 . - . gene_id "RvY_04793"; transcript_id "RvY_04793.1"; Scaffold002 rebuild exon 4045849 4048462 . - . gene_id "RvY_04793"; transcript_id "RvY_04793.1"; Scaffold002 rebuild exon 4048661 4048959 . - . gene_id "RvY_04793"; transcript_id "RvY_04793.1"; Scaffold002 rebuild exon 4049035 4049179 . - . gene_id "RvY_04793"; transcript_id "RvY_04793.1"; Scaffold002 rebuild transcript 4050115 4051746 . + . gene_id "RvY_04794"; transcript_id "RvY_04794.1"; gene_name "DCP2"; annotation "mRNA-decapping enzyme subunit 2 [EC:3.-.-.-]"; Pfam "[DCP2] Dcp2, box A domain|[NUDIX]"; CDD "mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U"; EC "EC3.-.-.-"; KO "K12613"; similar_genes "DCP2_PONAB(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 4050115 4050183 . + . gene_id "RvY_04794"; transcript_id "RvY_04794.1"; Scaffold002 rebuild exon 4050269 4050538 . + . gene_id "RvY_04794"; transcript_id "RvY_04794.1"; Scaffold002 rebuild exon 4050611 4050859 . + . gene_id "RvY_04794"; transcript_id "RvY_04794.1"; Scaffold002 rebuild exon 4050944 4051044 . + . gene_id "RvY_04794"; transcript_id "RvY_04794.1"; Scaffold002 rebuild exon 4051245 4051746 . + . gene_id "RvY_04794"; transcript_id "RvY_04794.1"; Scaffold002 rebuild transcript 4054036 4055780 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; gene_name "galM"; annotation "aldose 1-epimerase [EC:5.1.3.3]"; Pfam "[Aldose_epim] Aldose 1-epimerase"; CDD "galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose."; EC "EC5.1.3.3"; KO "K01785"; similar_genes "GALM_HUMAN(e-value:4.7e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4054036 4054285 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; Scaffold002 rebuild exon 4054428 4054582 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; Scaffold002 rebuild exon 4054798 4055022 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; Scaffold002 rebuild exon 4055106 4055341 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; Scaffold002 rebuild exon 4055423 4055597 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; Scaffold002 rebuild exon 4055664 4055780 . + . gene_id "RvY_04795"; transcript_id "RvY_04795.1"; Scaffold002 rebuild transcript 4056010 4056413 . - . gene_id "RvY_04796"; transcript_id "RvY_04796.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4056010 4056251 . - . gene_id "RvY_04796"; transcript_id "RvY_04796.1"; Scaffold002 rebuild exon 4056314 4056413 . - . gene_id "RvY_04796"; transcript_id "RvY_04796.1"; Scaffold002 rebuild transcript 4056605 4057943 . - . gene_id "RvY_04797"; transcript_id "RvY_04797.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3"; Scaffold002 rebuild exon 4056605 4056814 . - . gene_id "RvY_04797"; transcript_id "RvY_04797.1"; Scaffold002 rebuild exon 4056877 4057102 . - . gene_id "RvY_04797"; transcript_id "RvY_04797.1"; Scaffold002 rebuild exon 4057283 4057784 . - . gene_id "RvY_04797"; transcript_id "RvY_04797.1"; Scaffold002 rebuild exon 4057847 4057943 . - . gene_id "RvY_04797"; transcript_id "RvY_04797.1"; Scaffold002 rebuild transcript 4059318 4062266 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; gene_name "SET"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; Scaffold002 rebuild exon 4059318 4059824 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; Scaffold002 rebuild exon 4059919 4060294 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; Scaffold002 rebuild exon 4060364 4061514 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; Scaffold002 rebuild exon 4061581 4061891 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; Scaffold002 rebuild exon 4061955 4062116 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; Scaffold002 rebuild exon 4062209 4062266 . - . gene_id "RvY_04798"; transcript_id "RvY_04798.1"; Scaffold002 rebuild transcript 4064004 4064303 . + . gene_id "RvY_04799"; transcript_id "RvY_04799.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4064004 4064303 . + . gene_id "RvY_04799"; transcript_id "RvY_04799.1"; Scaffold002 rebuild transcript 4064510 4067155 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; Scaffold002 rebuild exon 4064510 4065007 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild exon 4065218 4065593 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild exon 4065811 4066049 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild exon 4066119 4066310 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild exon 4066443 4066756 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild exon 4066826 4067002 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild exon 4067104 4067155 . - . gene_id "RvY_04800"; transcript_id "RvY_04800.1"; Scaffold002 rebuild transcript 4068009 4068582 . + . gene_id "RvY_04801"; transcript_id "RvY_04801.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold002 rebuild exon 4068009 4068157 . + . gene_id "RvY_04801"; transcript_id "RvY_04801.1"; Scaffold002 rebuild exon 4068251 4068367 . + . gene_id "RvY_04801"; transcript_id "RvY_04801.1"; Scaffold002 rebuild exon 4068480 4068582 . + . gene_id "RvY_04801"; transcript_id "RvY_04801.1"; Scaffold002 rebuild transcript 4069342 4069671 . + . gene_id "RvY_04802"; transcript_id "RvY_04802.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4069342 4069671 . + . gene_id "RvY_04802"; transcript_id "RvY_04802.1"; Scaffold002 rebuild transcript 4070245 4070655 . + . gene_id "RvY_04803"; transcript_id "RvY_04803.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4070245 4070655 . + . gene_id "RvY_04803"; transcript_id "RvY_04803.1"; Scaffold002 rebuild transcript 4071358 4073601 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4071358 4072665 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.1"; Scaffold002 rebuild exon 4072731 4073056 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.1"; Scaffold002 rebuild exon 4073298 4073459 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.1"; Scaffold002 rebuild exon 4073550 4073601 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.1"; Scaffold002 rebuild transcript 4071154 4073601 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4071154 4071260 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.2"; Scaffold002 rebuild exon 4071555 4072665 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.2"; Scaffold002 rebuild exon 4072731 4073056 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.2"; Scaffold002 rebuild exon 4073298 4073459 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.2"; Scaffold002 rebuild exon 4073550 4073601 . - . gene_id "RvY_04804"; transcript_id "RvY_04804.2"; Scaffold002 rebuild transcript 4074677 4075587 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4074677 4075000 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.1"; Scaffold002 rebuild exon 4075270 4075587 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.1"; Scaffold002 rebuild transcript 4075240 4075587 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4075240 4075587 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.2"; Scaffold002 rebuild transcript 4075002 4075587 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4075002 4075019 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.3"; Scaffold002 rebuild exon 4075270 4075587 . - . gene_id "RvY_04805"; transcript_id "RvY_04805.3"; Scaffold002 rebuild transcript 4077904 4078984 . - . gene_id "RvY_04806"; transcript_id "RvY_04806.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4077904 4078216 . - . gene_id "RvY_04806"; transcript_id "RvY_04806.1"; Scaffold002 rebuild exon 4078297 4078468 . - . gene_id "RvY_04806"; transcript_id "RvY_04806.1"; Scaffold002 rebuild exon 4078774 4078984 . - . gene_id "RvY_04806"; transcript_id "RvY_04806.1"; Scaffold002 rebuild transcript 4080673 4081038 . + . gene_id "RvY_04807"; transcript_id "RvY_04807.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4080673 4081038 . + . gene_id "RvY_04807"; transcript_id "RvY_04807.1"; Scaffold002 rebuild transcript 4081124 4081472 . + . gene_id "RvY_04808"; transcript_id "RvY_04808.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4081124 4081253 . + . gene_id "RvY_04808"; transcript_id "RvY_04808.1"; Scaffold002 rebuild exon 4081336 4081472 . + . gene_id "RvY_04808"; transcript_id "RvY_04808.1"; Scaffold002 rebuild transcript 4082102 4082475 . + . gene_id "RvY_04809"; transcript_id "RvY_04809.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4082102 4082228 . + . gene_id "RvY_04809"; transcript_id "RvY_04809.1"; Scaffold002 rebuild exon 4082306 4082475 . + . gene_id "RvY_04809"; transcript_id "RvY_04809.1"; Scaffold002 rebuild transcript 4086056 4090139 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; gene_name "RasGEF"; annotation "hypothetical protein."; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[RasGEF_N] RasGEF N-terminal motif|[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; similar_genes "RGL1_MOUSE(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 4086056 4086100 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4086506 4086613 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4086753 4087045 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4087316 4087909 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4088212 4088401 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4088632 4088891 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4089267 4089733 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild exon 4089937 4090139 . + . gene_id "RvY_04810"; transcript_id "RvY_04810.1"; Scaffold002 rebuild transcript 4090510 4091237 . - . gene_id "RvY_04811"; transcript_id "RvY_04811.1"; annotation "hypothetical protein."; Pfam "[Rab5ip] Rab5-interacting protein (Rab5ip)"; Scaffold002 rebuild exon 4090510 4090551 . - . gene_id "RvY_04811"; transcript_id "RvY_04811.1"; Scaffold002 rebuild exon 4090742 4090874 . - . gene_id "RvY_04811"; transcript_id "RvY_04811.1"; Scaffold002 rebuild exon 4090952 4091055 . - . gene_id "RvY_04811"; transcript_id "RvY_04811.1"; Scaffold002 rebuild exon 4091145 4091237 . - . gene_id "RvY_04811"; transcript_id "RvY_04811.1"; Scaffold002 rebuild transcript 4091607 4095439 . + . gene_id "RvY_04812"; transcript_id "RvY_04812.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4091607 4091797 . + . gene_id "RvY_04812"; transcript_id "RvY_04812.1"; Scaffold002 rebuild exon 4092113 4092525 . + . gene_id "RvY_04812"; transcript_id "RvY_04812.1"; Scaffold002 rebuild exon 4092630 4093155 . + . gene_id "RvY_04812"; transcript_id "RvY_04812.1"; Scaffold002 rebuild exon 4093289 4094231 . + . gene_id "RvY_04812"; transcript_id "RvY_04812.1"; Scaffold002 rebuild exon 4094723 4095439 . + . gene_id "RvY_04812"; transcript_id "RvY_04812.1"; Scaffold002 rebuild transcript 4095782 4099520 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; KO "K14453"; similar_genes "S26A6_HUMAN(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 4095782 4095992 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4096098 4096176 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4097215 4097279 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4097351 4097553 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4097625 4097792 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4097873 4098034 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4098133 4098828 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4098890 4099319 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild exon 4099399 4099520 . + . gene_id "RvY_04813"; transcript_id "RvY_04813.1"; Scaffold002 rebuild transcript 4101119 4103428 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold002 rebuild exon 4101119 4101289 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild exon 4101377 4101441 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild exon 4101531 4101633 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild exon 4101718 4101879 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild exon 4101959 4102654 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild exon 4102783 4103248 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild exon 4103307 4103428 . + . gene_id "RvY_04814"; transcript_id "RvY_04814.1"; Scaffold002 rebuild transcript 4104140 4105324 . + . gene_id "RvY_04815"; transcript_id "RvY_04815.1"; annotation "hypothetical protein."; Pfam "[DUF3429]"; Scaffold002 rebuild exon 4104140 4104419 . + . gene_id "RvY_04815"; transcript_id "RvY_04815.1"; Scaffold002 rebuild exon 4104804 4104893 . + . gene_id "RvY_04815"; transcript_id "RvY_04815.1"; Scaffold002 rebuild exon 4104954 4105324 . + . gene_id "RvY_04815"; transcript_id "RvY_04815.1"; Scaffold002 rebuild transcript 4106980 4108548 . + . gene_id "RvY_04816"; transcript_id "RvY_04816.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4106980 4107051 . + . gene_id "RvY_04816"; transcript_id "RvY_04816.1"; Scaffold002 rebuild exon 4107585 4107798 . + . gene_id "RvY_04816"; transcript_id "RvY_04816.1"; Scaffold002 rebuild exon 4108148 4108548 . + . gene_id "RvY_04816"; transcript_id "RvY_04816.1"; Scaffold002 rebuild transcript 4109239 4111094 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; annotation "putative Zinc transporter ZIP13"; Pfam "[Zip] ZIP Zinc transporter"; KO "K14719"; similar_genes "S39AD_DANRE(e-value:2.0e-28;bit-score:123.0)"; Scaffold002 rebuild exon 4109239 4109317 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild exon 4109634 4109803 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild exon 4109918 4109982 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild exon 4110085 4110223 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild exon 4110308 4110549 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild exon 4110681 4110782 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild exon 4110899 4111094 . - . gene_id "RvY_04817"; transcript_id "RvY_04817.1"; Scaffold002 rebuild transcript 4111230 4111733 . - . gene_id "RvY_04818"; transcript_id "RvY_04818.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4111230 4111400 . - . gene_id "RvY_04818"; transcript_id "RvY_04818.1"; Scaffold002 rebuild exon 4111662 4111733 . - . gene_id "RvY_04818"; transcript_id "RvY_04818.1"; Scaffold002 rebuild transcript 4112380 4118129 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; gene_name "TRPM5"; annotation "transient receptor potential cation channel, subfamily M, member 5"; CDD "transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; KO "K04980"; Scaffold002 rebuild exon 4112380 4112548 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4112621 4112763 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4112843 4113029 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4113101 4113277 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4113351 4113618 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4113902 4114280 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4114360 4114595 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4114719 4115179 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4115537 4115858 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4115932 4116124 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4116190 4116299 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4116380 4116636 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4116835 4117271 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4117338 4117568 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4117640 4117816 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild exon 4118073 4118129 . - . gene_id "RvY_04819"; transcript_id "RvY_04819.1"; Scaffold002 rebuild transcript 4118654 4121455 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; gene_name "ORC1"; annotation "origin recognition complex subunit 1"; Pfam "[AAA_16] AAA ATPase domain|[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "origin recognition complex 1 protein; Provisional"; KO "K02603"; similar_genes "ORC1_CRIGR(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 4118654 4118762 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4118846 4118944 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4119012 4119747 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4119817 4120117 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4120176 4120328 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4120444 4120560 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4120849 4121021 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4121089 4121195 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild exon 4121286 4121455 . + . gene_id "RvY_04820"; transcript_id "RvY_04820.1"; Scaffold002 rebuild transcript 4121934 4125724 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.1"; gene_name "(1)S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "(1)EC2.7.11.1"; similar_genes "(1)KC1G1_MACFA(e-value:7.0e-14;bit-score:75.0)"; Scaffold002 rebuild exon 4121934 4122692 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.1"; Scaffold002 rebuild exon 4123063 4124033 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.1"; Scaffold002 rebuild exon 4124579 4124774 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.1"; Scaffold002 rebuild exon 4125055 4125224 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.1"; Scaffold002 rebuild exon 4125322 4125724 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.1"; Scaffold002 rebuild transcript 4121746 4123923 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.2"; gene_name "(1)S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "(1)EC2.7.11.1"; similar_genes "(1)KC1G1_MACFA(e-value:7.0e-14;bit-score:75.0)"; Scaffold002 rebuild exon 4121746 4121909 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.2"; Scaffold002 rebuild exon 4121975 4122692 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.2"; Scaffold002 rebuild exon 4123063 4123923 . - . gene_id "RvY_04821"; transcript_id "RvY_04821.2"; Scaffold002 rebuild transcript 4128476 4132196 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; gene_name "RRM"; annotation "putative Protein couch potato"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold002 rebuild exon 4128476 4128740 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4128858 4129108 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4129188 4129312 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4129411 4129579 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4129645 4129707 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4129775 4129828 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4129955 4130032 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4131878 4131937 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild exon 4132020 4132196 . - . gene_id "RvY_04822"; transcript_id "RvY_04822.1"; Scaffold002 rebuild transcript 4134826 4139237 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[HELP] HELP motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 4134826 4134924 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4135083 4135137 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4135272 4135453 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4135516 4135636 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4135717 4135871 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4135948 4136001 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4136078 4136175 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4136255 4136535 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4136807 4137345 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4137410 4137478 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4137569 4137818 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4137883 4138151 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4138280 4138846 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild exon 4138935 4139237 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.1"; Scaffold002 rebuild transcript 4136899 4139696 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[HELP] HELP motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 4136899 4137345 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4137410 4137478 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4137569 4137818 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4137883 4138151 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4138280 4138846 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4138935 4139211 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4139287 4139358 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild exon 4139425 4139696 . + . gene_id "RvY_04823"; transcript_id "RvY_04823.2"; Scaffold002 rebuild transcript 4141099 4142505 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; gene_name "UBE1C"; annotation "NEDD8-activating enzyme E1 catalytic subunit"; Pfam "[E2_bind] E2 binding domain|[UBA_e1_thiolCys] Ubiquitin-activating enzyme Scaffold002 rebuild exon 4141099 4141303 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; Scaffold002 rebuild exon 4141370 4141589 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; Scaffold002 rebuild exon 4141889 4141942 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; Scaffold002 rebuild exon 4142003 4142116 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; Scaffold002 rebuild exon 4142184 4142286 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; Scaffold002 rebuild exon 4142353 4142505 . - . gene_id "RvY_04824"; transcript_id "RvY_04824.1"; Scaffold002 rebuild transcript 4142512 4143502 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; gene_name "Uba3_RUB"; annotation "putative NEDD8-activating enzyme E1 catalytic subunit"; Pfam "[ThiF] ThiF family"; CDD "Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2."; EC "EC6.3.2.-"; similar_genes "UBA3_DROME(e-value:1.2e-26;bit-score:118.0)"; Scaffold002 rebuild exon 4142512 4142633 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; Scaffold002 rebuild exon 4142709 4142752 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; Scaffold002 rebuild exon 4142824 4142904 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; Scaffold002 rebuild exon 4142965 4143047 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; Scaffold002 rebuild exon 4143132 4143212 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; Scaffold002 rebuild exon 4143314 4143502 . - . gene_id "RvY_04825"; transcript_id "RvY_04825.1"; Scaffold002 rebuild transcript 4144103 4146305 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; gene_name "PSEN1"; annotation "Presenilin-1"; Pfam "[Presenilin]"; CDD "Presenilin. Mutations in presenilin-1 are a major cause of early onset Alzheimer's disease. It has been found that presenilin-1 binds to beta-catenin in-vivo. This family also contains SPE proteins from C.elegans."; EC "EC3.4.23.-"; KO "K04505"; similar_genes "PSN1_CHICK(e-value:1.1e-67;bit-score:254.0)"; Scaffold002 rebuild exon 4144103 4144186 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4144251 4144567 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4144726 4144867 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4145007 4145295 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4145352 4145450 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4145527 4145817 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4145881 4145993 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild exon 4146150 4146305 . + . gene_id "RvY_04826"; transcript_id "RvY_04826.1"; Scaffold002 rebuild transcript 4146993 4148668 . + . gene_id "RvY_04827"; transcript_id "RvY_04827.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold002 rebuild exon 4146993 4147780 . + . gene_id "RvY_04827"; transcript_id "RvY_04827.1"; Scaffold002 rebuild exon 4147964 4148122 . + . gene_id "RvY_04827"; transcript_id "RvY_04827.1"; Scaffold002 rebuild exon 4148231 4148507 . + . gene_id "RvY_04827"; transcript_id "RvY_04827.1"; Scaffold002 rebuild exon 4148585 4148668 . + . gene_id "RvY_04827"; transcript_id "RvY_04827.1"; Scaffold002 rebuild transcript 4149005 4150961 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERC_DROME(e-value:6.3e-17;bit-score:85.0)"; Scaffold002 rebuild exon 4149005 4149104 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4149197 4149247 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4149330 4149469 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4149567 4149719 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4149796 4149898 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4149961 4150393 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4150450 4150622 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4150714 4150819 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild exon 4150895 4150961 . + . gene_id "RvY_04828"; transcript_id "RvY_04828.1"; Scaffold002 rebuild transcript 4151104 4158810 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; gene_name "APC1"; annotation "anaphase-promoting complex subunit 1"; Pfam "[Apc1] Anaphase-promoting complex subunit 1"; KO "K03348"; similar_genes "APC1_MOUSE(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 4151104 4151648 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4151904 4152124 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4152216 4152685 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4152917 4153388 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4153506 4153840 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4154060 4154409 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4154601 4155527 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4155634 4156078 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4156250 4156902 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4157101 4157587 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4157653 4158254 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild exon 4158363 4158810 . - . gene_id "RvY_04829"; transcript_id "RvY_04829.1"; Scaffold002 rebuild transcript 4159660 4161086 . + . gene_id "RvY_04830"; transcript_id "RvY_04830.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4159660 4159774 . + . gene_id "RvY_04830"; transcript_id "RvY_04830.1"; Scaffold002 rebuild exon 4159919 4160221 . + . gene_id "RvY_04830"; transcript_id "RvY_04830.1"; Scaffold002 rebuild exon 4160420 4160515 . + . gene_id "RvY_04830"; transcript_id "RvY_04830.1"; Scaffold002 rebuild exon 4160743 4161086 . + . gene_id "RvY_04830"; transcript_id "RvY_04830.1"; Scaffold002 rebuild transcript 4161556 4162765 . - . gene_id "RvY_04831"; transcript_id "RvY_04831.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4161556 4162085 . - . gene_id "RvY_04831"; transcript_id "RvY_04831.1"; Scaffold002 rebuild exon 4162744 4162765 . - . gene_id "RvY_04831"; transcript_id "RvY_04831.1"; Scaffold002 rebuild transcript 4162787 4163465 . - . gene_id "RvY_04832"; transcript_id "RvY_04832.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4162787 4163071 . - . gene_id "RvY_04832"; transcript_id "RvY_04832.1"; Scaffold002 rebuild exon 4163177 4163248 . - . gene_id "RvY_04832"; transcript_id "RvY_04832.1"; Scaffold002 rebuild exon 4163409 4163465 . - . gene_id "RvY_04832"; transcript_id "RvY_04832.1"; Scaffold002 rebuild transcript 4162787 4163008 . - . gene_id "RvY_04832"; transcript_id "RvY_04832.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4162787 4163008 . - . gene_id "RvY_04832"; transcript_id "RvY_04832.2"; Scaffold002 rebuild transcript 4164471 4166907 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; gene_name "TFIIH1"; annotation "transcription initiation factor TFIIH subunit H1"; Pfam "[BSD]|[TFIIH_BTF_p62_N] TFIIH p62 subunit, N-terminal domain"; KO "K03141"; similar_genes "TF2H1_DROME(e-value:8.6e-23;bit-score:105.0)"; Scaffold002 rebuild exon 4164471 4164639 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4164721 4164922 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4165017 4165113 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4165200 4165350 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4165413 4165565 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4165642 4165727 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4165788 4166033 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4166097 4166297 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4166399 4166593 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild exon 4166740 4166907 . + . gene_id "RvY_04833"; transcript_id "RvY_04833.1"; Scaffold002 rebuild transcript 4167358 4167861 . - . gene_id "RvY_04834"; transcript_id "RvY_04834.1"; annotation "hypothetical protein."; Pfam "[Polysacc_synt_4] Polysaccharide biosynthesis"; similar_genes "CX026_MOUSE(e-value:3.6e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4167358 4167861 . - . gene_id "RvY_04834"; transcript_id "RvY_04834.1"; Scaffold002 rebuild transcript 4168634 4172015 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; gene_name "TOP3"; annotation "putative DNA topoisomerase 3-beta-1"; Pfam "[Topoisom_bac] DNA topoisomerase|[Toprim]"; CDD "Topoisomerase IA [DNA replication, recombination, and repair]"; EC "EC5.99.1.2"; KO "K03165"; similar_genes "TOP3B_HUMAN(e-value:4.2e-35;bit-score:146.0)"; Scaffold002 rebuild exon 4168634 4169191 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild exon 4169386 4169418 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild exon 4169491 4169871 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild exon 4169935 4170228 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild exon 4170317 4170427 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild exon 4170503 4171090 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild exon 4171383 4172015 . + . gene_id "RvY_04835"; transcript_id "RvY_04835.1"; Scaffold002 rebuild transcript 4172504 4174195 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; annotation "hypothetical protein."; Pfam "[Hep_59] Hepatocellular carcinoma-associated antigen 59"; similar_genes "CI078_MOUSE(e-value:3.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 4172504 4172709 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4172791 4172939 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4173023 4173154 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4173237 4173320 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4173400 4173498 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4173580 4173641 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4173794 4173848 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4173947 4174006 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild exon 4174071 4174195 . - . gene_id "RvY_04836"; transcript_id "RvY_04836.1"; Scaffold002 rebuild transcript 4175384 4175849 . + . gene_id "RvY_04837"; transcript_id "RvY_04837.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4175384 4175600 . + . gene_id "RvY_04837"; transcript_id "RvY_04837.1"; Scaffold002 rebuild exon 4175707 4175849 . + . gene_id "RvY_04837"; transcript_id "RvY_04837.1"; Scaffold002 rebuild transcript 4175822 4176040 . + . gene_id "RvY_04837"; transcript_id "RvY_04837.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4175822 4176040 . + . gene_id "RvY_04837"; transcript_id "RvY_04837.2"; Scaffold002 rebuild transcript 4176983 4180082 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; gene_name "(1)SLC28A(2,3)nupC"; annotation "(1)putative Solute carrier family 28 member 3(2,3)hypothetical protein."; Pfam "(1)[Nucleos_tra2_C] Na+ dependent nucleoside transporter C-terminus|[Nucleos_tra2_N] Na+ dependent nucleoside transporter N-terminus"; CDD "nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities."; KO "(1)K11536"; similar_genes "(1)S28A3_RAT(e-value:3.6e-49;bit-score:192.0)(2)S28A3_HUMAN(e-value:6.7e-25;bit-score:112.0)(3)S28A3_MOUSE(e-value:1.4e-16;bit-score:84.0)"; Scaffold002 rebuild exon 4176983 4177129 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4177305 4177666 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4177739 4177888 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4178116 4178299 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4178388 4178486 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4178544 4178606 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4178692 4178739 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4178858 4178942 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4179022 4179142 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4179217 4179385 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4179451 4179609 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4179684 4179864 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild exon 4179934 4180082 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.1"; Scaffold002 rebuild transcript 4176983 4178847 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; gene_name "(1)SLC28A(2,3)nupC"; annotation "(1)putative Solute carrier family 28 member 3(2,3)hypothetical protein."; Pfam "(1)[Nucleos_tra2_C] Na+ dependent nucleoside transporter C-terminus|[Nucleos_tra2_N] Na+ dependent nucleoside transporter N-terminus"; CDD "nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities."; KO "(1)K11536"; similar_genes "(1)S28A3_RAT(e-value:3.6e-49;bit-score:192.0)(2)S28A3_HUMAN(e-value:6.7e-25;bit-score:112.0)(3)S28A3_MOUSE(e-value:1.4e-16;bit-score:84.0)"; Scaffold002 rebuild exon 4176983 4177129 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild exon 4177305 4177666 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild exon 4177739 4177888 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild exon 4178116 4178299 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild exon 4178388 4178486 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild exon 4178544 4178606 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild exon 4178692 4178847 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.2"; Scaffold002 rebuild transcript 4176983 4178750 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; gene_name "(1)SLC28A(2,3)nupC"; annotation "(1)putative Solute carrier family 28 member 3(2,3)hypothetical protein."; Pfam "(1)[Nucleos_tra2_C] Na+ dependent nucleoside transporter C-terminus|[Nucleos_tra2_N] Na+ dependent nucleoside transporter N-terminus"; CDD "nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities."; KO "(1)K11536"; similar_genes "(1)S28A3_RAT(e-value:3.6e-49;bit-score:192.0)(2)S28A3_HUMAN(e-value:6.7e-25;bit-score:112.0)(3)S28A3_MOUSE(e-value:1.4e-16;bit-score:84.0)"; Scaffold002 rebuild exon 4176983 4177129 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild exon 4177305 4177666 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild exon 4177739 4177888 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild exon 4178116 4178299 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild exon 4178388 4178486 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild exon 4178544 4178601 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild exon 4178692 4178750 . + . gene_id "RvY_04838"; transcript_id "RvY_04838.3"; Scaffold002 rebuild transcript 4180560 4181933 . - . gene_id "RvY_04839"; transcript_id "RvY_04839.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4180560 4180754 . - . gene_id "RvY_04839"; transcript_id "RvY_04839.1"; Scaffold002 rebuild exon 4180820 4181211 . - . gene_id "RvY_04839"; transcript_id "RvY_04839.1"; Scaffold002 rebuild exon 4181438 4181618 . - . gene_id "RvY_04839"; transcript_id "RvY_04839.1"; Scaffold002 rebuild exon 4181832 4181933 . - . gene_id "RvY_04839"; transcript_id "RvY_04839.1"; Scaffold002 rebuild transcript 4182050 4182265 . - . gene_id "RvY_04840"; transcript_id "RvY_04840.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4182050 4182265 . - . gene_id "RvY_04840"; transcript_id "RvY_04840.1"; Scaffold002 rebuild transcript 4183036 4183638 . - . gene_id "RvY_04841"; transcript_id "RvY_04841.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold002 rebuild exon 4183036 4183638 . - . gene_id "RvY_04841"; transcript_id "RvY_04841.1"; Scaffold002 rebuild transcript 4184490 4185900 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4184490 4184683 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.1"; Scaffold002 rebuild exon 4184820 4185224 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.1"; Scaffold002 rebuild exon 4185297 4185429 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.1"; Scaffold002 rebuild exon 4185583 4185689 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.1"; Scaffold002 rebuild exon 4185801 4185900 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.1"; Scaffold002 rebuild transcript 4184587 4185900 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4184587 4184683 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.2"; Scaffold002 rebuild exon 4184843 4185224 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.2"; Scaffold002 rebuild exon 4185297 4185429 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.2"; Scaffold002 rebuild exon 4185583 4185689 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.2"; Scaffold002 rebuild exon 4185801 4185900 . + . gene_id "RvY_04842"; transcript_id "RvY_04842.2"; Scaffold002 rebuild transcript 4186642 4188326 . - . gene_id "RvY_04843"; transcript_id "RvY_04843.1"; gene_name "BGLUT"; annotation "UDP-glucose:tetrahydrobiopterin glucosyltransferase [EC:2.4.1.-]"; Pfam "[Glyco_trans_4_4] Glycosyl transferase 4-like domain|[Glyco_trans_1_2] Glycosyl transferases group 1|[Glyco_trans_1_4] Glycosyl transferases group 1|[Glyco_transf_4] Glycosyltransferase Family 4|[Glycos_transf_1] Glycosyl transferases group 1"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue."; EC "EC2.4.1.-"; KO "K03867"; Scaffold002 rebuild exon 4186642 4186918 . - . gene_id "RvY_04843"; transcript_id "RvY_04843.1"; Scaffold002 rebuild exon 4187172 4187493 . - . gene_id "RvY_04843"; transcript_id "RvY_04843.1"; Scaffold002 rebuild exon 4187557 4187845 . - . gene_id "RvY_04843"; transcript_id "RvY_04843.1"; Scaffold002 rebuild exon 4188045 4188326 . - . gene_id "RvY_04843"; transcript_id "RvY_04843.1"; Scaffold002 rebuild transcript 4190311 4193004 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; gene_name "DHCR24"; annotation "24-dehydrocholesterol reductase"; Pfam "[FAD_binding_4] FAD binding domain"; CDD "FAD/FMN-containing dehydrogenases [Energy production and conversion]"; EC "EC1.3.1.-|EC1.3.1.72"; KO "K09828"; similar_genes "DHC24_RAT(e-value:3.8e-57;bit-score:219.0)"; Scaffold002 rebuild exon 4190311 4190464 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild exon 4190545 4190930 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild exon 4191019 4191162 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild exon 4191274 4191540 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild exon 4191739 4191857 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild exon 4192432 4192693 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild exon 4192777 4193004 . - . gene_id "RvY_04844"; transcript_id "RvY_04844.1"; Scaffold002 rebuild transcript 4193897 4194311 . + . gene_id "RvY_04845"; transcript_id "RvY_04845.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4193897 4194008 . + . gene_id "RvY_04845"; transcript_id "RvY_04845.1"; Scaffold002 rebuild exon 4194085 4194311 . + . gene_id "RvY_04845"; transcript_id "RvY_04845.1"; Scaffold002 rebuild transcript 4194416 4195512 . + . gene_id "RvY_04846"; transcript_id "RvY_04846.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 4194416 4194842 . + . gene_id "RvY_04846"; transcript_id "RvY_04846.1"; Scaffold002 rebuild exon 4195004 4195512 . + . gene_id "RvY_04846"; transcript_id "RvY_04846.1"; Scaffold002 rebuild transcript 4196469 4196843 . + . gene_id "RvY_04847"; transcript_id "RvY_04847.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4196469 4196843 . + . gene_id "RvY_04847"; transcript_id "RvY_04847.1"; Scaffold002 rebuild transcript 4197232 4199861 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 4197232 4197672 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4197735 4197830 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4197896 4197969 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4198037 4198119 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4198184 4198248 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4198333 4198401 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4198470 4198566 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4198645 4198784 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4198844 4199046 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4199125 4199220 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4199288 4199359 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild exon 4199474 4199861 . + . gene_id "RvY_04848"; transcript_id "RvY_04848.1"; Scaffold002 rebuild transcript 4198858 4199642 . - . gene_id "RvY_04849"; transcript_id "RvY_04849.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4198858 4199242 . - . gene_id "RvY_04849"; transcript_id "RvY_04849.1"; Scaffold002 rebuild exon 4199491 4199642 . - . gene_id "RvY_04849"; transcript_id "RvY_04849.1"; Scaffold002 rebuild transcript 4200406 4203230 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; gene_name "COG5296"; annotation "hypothetical protein."; Pfam "[Plus-3]"; CDD "Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]"; KO "K15178"; similar_genes "RTF1_PONAB(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 4200406 4200470 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4200739 4201122 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4201454 4201740 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4201850 4201953 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4202037 4202449 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4202570 4202851 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4202912 4202984 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild exon 4203048 4203230 . - . gene_id "RvY_04850"; transcript_id "RvY_04850.1"; Scaffold002 rebuild transcript 4203815 4204087 . + . gene_id "RvY_04851"; transcript_id "RvY_04851.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4203815 4204087 . + . gene_id "RvY_04851"; transcript_id "RvY_04851.1"; Scaffold002 rebuild transcript 4206345 4207578 . - . gene_id "RvY_04852"; transcript_id "RvY_04852.1"; gene_name "SYF2"; annotation "pre-mRNA-splicing factor SYF2"; Pfam "[SYF2] SYF2 splicing factor"; KO "K12868"; similar_genes "SYF2_GECJA(e-value:4.3e-20;bit-score:96.0)"; Scaffold002 rebuild exon 4206345 4206510 . - . gene_id "RvY_04852"; transcript_id "RvY_04852.1"; Scaffold002 rebuild exon 4206649 4206747 . - . gene_id "RvY_04852"; transcript_id "RvY_04852.1"; Scaffold002 rebuild exon 4206828 4207039 . - . gene_id "RvY_04852"; transcript_id "RvY_04852.1"; Scaffold002 rebuild exon 4207166 4207291 . - . gene_id "RvY_04852"; transcript_id "RvY_04852.1"; Scaffold002 rebuild exon 4207414 4207578 . - . gene_id "RvY_04852"; transcript_id "RvY_04852.1"; Scaffold002 rebuild transcript 4208200 4210852 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; gene_name "DUF2044"; annotation "hypothetical protein."; Pfam "[MCM_bind] Mini-chromosome maintenance replisome factor|[Racemase_4] Putative alanine racemase"; CDD "Conserved membrane protein (DUF2044). This entry is of proteins of approximately 600 residues in length containing alternating regions of conservation and low complexity. The function is unknown."; Scaffold002 rebuild exon 4208200 4208400 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4208468 4208757 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4208840 4209017 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4209231 4209348 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4209435 4209567 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4209662 4209869 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4209943 4210143 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4210210 4210401 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4210496 4210602 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild exon 4210789 4210852 . - . gene_id "RvY_04853"; transcript_id "RvY_04853.1"; Scaffold002 rebuild transcript 4211706 4213949 . + . gene_id "RvY_04854"; transcript_id "RvY_04854.1"; gene_name "EHD1"; annotation "EH domain-containing protein 3"; Pfam "[efhand_3] Cytoskeletal-regulatory complex EF hand|[Dynamin_N] Dynamin family|[MMR_HSR1] 50S ribosome-binding GTPase"; KO "K12483"; similar_genes "EHD3_HUMAN(e-value:9.4e-173;bit-score:603.0)"; Scaffold002 rebuild exon 4211706 4212171 . + . gene_id "RvY_04854"; transcript_id "RvY_04854.1"; Scaffold002 rebuild exon 4212449 4212897 . + . gene_id "RvY_04854"; transcript_id "RvY_04854.1"; Scaffold002 rebuild exon 4213230 4213949 . + . gene_id "RvY_04854"; transcript_id "RvY_04854.1"; Scaffold002 rebuild transcript 4214245 4215162 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.1"; gene_name "(1)S1_eIF1AD_like"; annotation "hypothetical protein."; Pfam "[eIF-1a] Translation initiation factor 1A / IF-1"; CDD "(1)S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors."; KO "(1)K15025"; similar_genes "(1)EIF1A_XENTR(e-value:9.5e-18;bit-score:88.0)"; Scaffold002 rebuild exon 4214245 4214530 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.1"; Scaffold002 rebuild exon 4214690 4214801 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.1"; Scaffold002 rebuild exon 4214889 4214997 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.1"; Scaffold002 rebuild exon 4215070 4215162 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.1"; Scaffold002 rebuild transcript 4215075 4215488 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.2"; gene_name "(1)S1_eIF1AD_like"; annotation "hypothetical protein."; Pfam "[eIF-1a] Translation initiation factor 1A / IF-1"; CDD "(1)S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors."; KO "(1)K15025"; similar_genes "(1)EIF1A_XENTR(e-value:9.5e-18;bit-score:88.0)"; Scaffold002 rebuild exon 4215075 4215488 . - . gene_id "RvY_04855"; transcript_id "RvY_04855.2"; Scaffold002 rebuild transcript 4215416 4216585 . + . gene_id "RvY_04856"; transcript_id "RvY_04856.1"; gene_name "APITD1"; annotation "centromere protein S"; KO "K11511"; Scaffold002 rebuild exon 4215416 4215718 . + . gene_id "RvY_04856"; transcript_id "RvY_04856.1"; Scaffold002 rebuild exon 4215841 4215957 . + . gene_id "RvY_04856"; transcript_id "RvY_04856.1"; Scaffold002 rebuild exon 4216036 4216076 . + . gene_id "RvY_04856"; transcript_id "RvY_04856.1"; Scaffold002 rebuild exon 4216246 4216585 . + . gene_id "RvY_04856"; transcript_id "RvY_04856.1"; Scaffold002 rebuild transcript 4216866 4219740 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold002 rebuild exon 4216866 4216938 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4217038 4217096 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4217160 4217676 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4217734 4218187 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4218406 4218478 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4218574 4218621 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4218693 4218872 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4218954 4219172 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4219281 4219395 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild exon 4219484 4219740 . - . gene_id "RvY_04857"; transcript_id "RvY_04857.1"; Scaffold002 rebuild transcript 4220427 4223680 . - . gene_id "RvY_04858"; transcript_id "RvY_04858.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4220427 4220611 . - . gene_id "RvY_04858"; transcript_id "RvY_04858.1"; Scaffold002 rebuild exon 4220680 4220832 . - . gene_id "RvY_04858"; transcript_id "RvY_04858.1"; Scaffold002 rebuild exon 4220939 4222795 . - . gene_id "RvY_04858"; transcript_id "RvY_04858.1"; Scaffold002 rebuild exon 4222857 4223141 . - . gene_id "RvY_04858"; transcript_id "RvY_04858.1"; Scaffold002 rebuild exon 4223299 4223680 . - . gene_id "RvY_04858"; transcript_id "RvY_04858.1"; Scaffold002 rebuild transcript 4224435 4228302 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; gene_name "K01104"; annotation "protein-tyrosine phosphatase [EC:3.1.3.48]"; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[Y_phosphatase] Protein-tyrosine phosphatase"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K01104"; Scaffold002 rebuild exon 4224435 4224560 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4224752 4225819 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4225891 4225986 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4226069 4226356 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4226533 4226756 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4226944 4227426 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4227573 4227764 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild exon 4227846 4228302 . - . gene_id "RvY_04859"; transcript_id "RvY_04859.1"; Scaffold002 rebuild transcript 4230627 4232144 . - . gene_id "RvY_04860"; transcript_id "RvY_04860.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold002 rebuild exon 4230627 4232144 . - . gene_id "RvY_04860"; transcript_id "RvY_04860.1"; Scaffold002 rebuild transcript 4233473 4234429 . + . gene_id "RvY_04861"; transcript_id "RvY_04861.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold002 rebuild exon 4233473 4233568 . + . gene_id "RvY_04861"; transcript_id "RvY_04861.1"; Scaffold002 rebuild exon 4233644 4233823 . + . gene_id "RvY_04861"; transcript_id "RvY_04861.1"; Scaffold002 rebuild exon 4234047 4234080 . + . gene_id "RvY_04861"; transcript_id "RvY_04861.1"; Scaffold002 rebuild exon 4234167 4234281 . + . gene_id "RvY_04861"; transcript_id "RvY_04861.1"; Scaffold002 rebuild exon 4234363 4234429 . + . gene_id "RvY_04861"; transcript_id "RvY_04861.1"; Scaffold002 rebuild transcript 4234704 4240125 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; gene_name "XRN1"; annotation "putative 5'-3' exoribonuclease 1"; Pfam "[XRN_N] XRN 5'-3' exonuclease N-terminus"; CDD "5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation]"; EC "EC3.1.11.-|EC3.1.13.-"; KO "K12618"; similar_genes "XRN1_YEAST(e-value:3.2e-35;bit-score:146.0)"; Scaffold002 rebuild exon 4234704 4235030 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4235174 4235554 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4235623 4235790 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4235850 4235951 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4236023 4236299 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4236612 4236829 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4236924 4237013 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4237104 4237230 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4237306 4237472 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4237539 4237655 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4237732 4237888 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4237964 4238129 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4238191 4238629 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4238746 4238833 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4238899 4238981 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4239059 4239169 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4239264 4239373 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4239476 4239573 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4239636 4239736 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4239813 4239944 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild exon 4240051 4240125 . - . gene_id "RvY_04862"; transcript_id "RvY_04862.1"; Scaffold002 rebuild transcript 4240717 4241681 . + . gene_id "RvY_04863"; transcript_id "RvY_04863.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 4240717 4240729 . + . gene_id "RvY_04863"; transcript_id "RvY_04863.1"; Scaffold002 rebuild exon 4241109 4241351 . + . gene_id "RvY_04863"; transcript_id "RvY_04863.1"; Scaffold002 rebuild exon 4241473 4241681 . + . gene_id "RvY_04863"; transcript_id "RvY_04863.1"; Scaffold002 rebuild transcript 4241703 4241999 . + . gene_id "RvY_04864"; transcript_id "RvY_04864.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4241703 4241999 . + . gene_id "RvY_04864"; transcript_id "RvY_04864.1"; Scaffold002 rebuild transcript 4242592 4242780 . + . gene_id "RvY_04865"; transcript_id "RvY_04865.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4242592 4242780 . + . gene_id "RvY_04865"; transcript_id "RvY_04865.1"; Scaffold002 rebuild transcript 4244364 4245804 . + . gene_id "RvY_04866"; transcript_id "RvY_04866.1"; gene_name "ltaA"; annotation "threonine aldolase [EC:4.1.2.5]"; Pfam "[Beta_elim_lyase] Beta-eliminating lyase"; EC "EC4.1.2.5"; KO "K01620"; similar_genes "YF64_CAEEL(e-value:8.4e-19;bit-score:92.0)"; Scaffold002 rebuild exon 4244364 4245002 . + . gene_id "RvY_04866"; transcript_id "RvY_04866.1"; Scaffold002 rebuild exon 4245175 4245804 . + . gene_id "RvY_04866"; transcript_id "RvY_04866.1"; Scaffold002 rebuild transcript 4246094 4249947 . - . gene_id "RvY_04867"; transcript_id "RvY_04867.1"; gene_name "CYLD"; annotation "ubiquitin thioesterase CYLD [EC:3.1.2.15]"; Pfam "[CAP_GLY] CAP-Gly domain"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; EC "EC3.1.2.15"; KO "K08601"; Scaffold002 rebuild exon 4246094 4246750 . - . gene_id "RvY_04867"; transcript_id "RvY_04867.1"; Scaffold002 rebuild exon 4247090 4247404 . - . gene_id "RvY_04867"; transcript_id "RvY_04867.1"; Scaffold002 rebuild exon 4247483 4247733 . - . gene_id "RvY_04867"; transcript_id "RvY_04867.1"; Scaffold002 rebuild exon 4247979 4248774 . - . gene_id "RvY_04867"; transcript_id "RvY_04867.1"; Scaffold002 rebuild exon 4248865 4249947 . - . gene_id "RvY_04867"; transcript_id "RvY_04867.1"; Scaffold002 rebuild transcript 4251490 4253993 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; gene_name "CHK1"; annotation "putative Serine/threonine-protein kinase Chk1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K02216"; similar_genes "CHK1_XENLA(e-value:1.0e-29;bit-score:128.0)"; Scaffold002 rebuild exon 4251490 4251746 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4251825 4251936 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4252035 4252158 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4252237 4252301 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4252427 4252496 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4252575 4252739 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4252812 4252940 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4253024 4253122 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4253201 4253400 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4253492 4253629 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4253695 4253796 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild exon 4253859 4253993 . + . gene_id "RvY_04868"; transcript_id "RvY_04868.1"; Scaffold002 rebuild transcript 4254178 4255818 . - . gene_id "RvY_04869"; transcript_id "RvY_04869.1"; gene_name "ivd"; annotation "Isovaleryl-CoA dehydrogenase, mitochondrial"; Pfam "[Acyl-CoA_dh_N] Acyl-CoA dehydrogenase, N-terminal domain|[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_2] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates."; EC "EC1.3.99.10"; KO "K00253"; similar_genes "IVD_BOVIN(e-value:1.6e-81;bit-score:300.0)"; Scaffold002 rebuild exon 4254178 4254495 . - . gene_id "RvY_04869"; transcript_id "RvY_04869.1"; Scaffold002 rebuild exon 4254718 4255218 . - . gene_id "RvY_04869"; transcript_id "RvY_04869.1"; Scaffold002 rebuild exon 4255273 4255442 . - . gene_id "RvY_04869"; transcript_id "RvY_04869.1"; Scaffold002 rebuild exon 4255533 4255818 . - . gene_id "RvY_04869"; transcript_id "RvY_04869.1"; Scaffold002 rebuild transcript 4256626 4262162 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; gene_name "(3)RNF14"; annotation "(1,2)hypothetical protein.(3)E3 ubiquitin-protein ligase RNF14 [EC:6.3.2.19]"; Pfam "(3)[IBR]|[CAP_GLY] CAP-Gly domain"; EC "(3)EC6.3.2.-|EC6.3.2.19"; KO "(3)K11971"; similar_genes "(3)RNF14_HUMAN(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 4256626 4257286 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4257348 4257556 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4257621 4257935 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4258000 4258284 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4258384 4258836 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4259047 4259691 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4259795 4260121 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4260185 4260535 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4260871 4261353 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild exon 4261908 4262162 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.1"; Scaffold002 rebuild transcript 4256626 4262296 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; gene_name "(3)RNF14"; annotation "(1,2)hypothetical protein.(3)E3 ubiquitin-protein ligase RNF14 [EC:6.3.2.19]"; Pfam "(3)[IBR]|[CAP_GLY] CAP-Gly domain"; EC "(3)EC6.3.2.-|EC6.3.2.19"; KO "(3)K11971"; similar_genes "(3)RNF14_HUMAN(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 4256626 4257286 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4257348 4257556 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4257621 4257935 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4258000 4258284 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4258384 4258836 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4259047 4259691 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4259795 4260121 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4260185 4260535 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4260871 4261353 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4261908 4261951 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild exon 4262233 4262296 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.2"; Scaffold002 rebuild transcript 4257654 4262624 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; gene_name "(3)RNF14"; annotation "(1,2)hypothetical protein.(3)E3 ubiquitin-protein ligase RNF14 [EC:6.3.2.19]"; Pfam "(3)[IBR]|[CAP_GLY] CAP-Gly domain"; EC "(3)EC6.3.2.-|EC6.3.2.19"; KO "(3)K11971"; similar_genes "(3)RNF14_HUMAN(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 4257654 4257935 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4258000 4258284 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4258384 4258836 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4259047 4259691 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4259795 4260121 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4260185 4260535 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4260871 4261353 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4261908 4262148 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4262233 4262405 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild exon 4262487 4262624 . + . gene_id "RvY_04870"; transcript_id "RvY_04870.3"; Scaffold002 rebuild transcript 4263161 4264950 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 4263161 4263220 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.1"; Scaffold002 rebuild exon 4263397 4263671 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.1"; Scaffold002 rebuild exon 4263802 4263936 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.1"; Scaffold002 rebuild exon 4264020 4264254 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.1"; Scaffold002 rebuild exon 4264369 4264950 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.1"; Scaffold002 rebuild transcript 4263204 4264950 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 4263204 4263220 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.2"; Scaffold002 rebuild exon 4263802 4263936 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.2"; Scaffold002 rebuild exon 4264020 4264254 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.2"; Scaffold002 rebuild exon 4264369 4264950 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.2"; Scaffold002 rebuild transcript 4263161 4264435 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 4263161 4263220 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.3"; Scaffold002 rebuild exon 4263397 4263671 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.3"; Scaffold002 rebuild exon 4263802 4263936 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.3"; Scaffold002 rebuild exon 4264020 4264254 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.3"; Scaffold002 rebuild exon 4264430 4264435 . + . gene_id "RvY_04871"; transcript_id "RvY_04871.3"; Scaffold002 rebuild transcript 4265389 4267509 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4265389 4265727 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; Scaffold002 rebuild exon 4265783 4266071 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; Scaffold002 rebuild exon 4266145 4266441 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; Scaffold002 rebuild exon 4266519 4266631 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; Scaffold002 rebuild exon 4266706 4266831 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; Scaffold002 rebuild exon 4266940 4267509 . - . gene_id "RvY_04872"; transcript_id "RvY_04872.1"; Scaffold002 rebuild transcript 4268618 4271331 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; gene_name "CYP3A"; annotation "putative Cytochrome P450 3A13"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07424"; similar_genes "CP3AD_MOUSE(e-value:6.1e-30;bit-score:129.0)"; Scaffold002 rebuild exon 4268618 4268673 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4268845 4268938 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4269007 4269103 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4269169 4269221 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4269283 4269399 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4269486 4269574 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4269845 4269993 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4270062 4270186 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4270281 4270502 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4270665 4271038 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild exon 4271091 4271331 . + . gene_id "RvY_04873"; transcript_id "RvY_04873.1"; Scaffold002 rebuild transcript 4271826 4278266 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; gene_name "MAP3K4"; annotation "mitogen-activated protein kinase kinase kinase 4 [EC:2.7.11.25]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses."; EC "EC2.7.11.25"; KO "K04428"; similar_genes "MKKA_DICDI(e-value:2.2e-06;bit-score:50.0)"; Scaffold002 rebuild exon 4271826 4271987 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4272064 4272116 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4272279 4272576 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4272640 4272686 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4272757 4273129 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4273289 4273652 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4273714 4274000 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4274200 4274665 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4274736 4274892 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4275178 4275738 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4276010 4276793 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4277010 4277383 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild exon 4277768 4278266 . - . gene_id "RvY_04874"; transcript_id "RvY_04874.1"; Scaffold002 rebuild transcript 4280610 4281073 . + . gene_id "RvY_04875"; transcript_id "RvY_04875.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 4280610 4280772 . + . gene_id "RvY_04875"; transcript_id "RvY_04875.1"; Scaffold002 rebuild exon 4280859 4281073 . + . gene_id "RvY_04875"; transcript_id "RvY_04875.1"; Scaffold002 rebuild transcript 4280902 4282378 . + . gene_id "RvY_04875"; transcript_id "RvY_04875.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 4280902 4281041 . + . gene_id "RvY_04875"; transcript_id "RvY_04875.2"; Scaffold002 rebuild exon 4282270 4282378 . + . gene_id "RvY_04875"; transcript_id "RvY_04875.2"; Scaffold002 rebuild transcript 4282782 4283696 . + . gene_id "RvY_04876"; transcript_id "RvY_04876.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 4282782 4282934 . + . gene_id "RvY_04876"; transcript_id "RvY_04876.1"; Scaffold002 rebuild exon 4283065 4283133 . + . gene_id "RvY_04876"; transcript_id "RvY_04876.1"; Scaffold002 rebuild exon 4283334 4283696 . + . gene_id "RvY_04876"; transcript_id "RvY_04876.1"; Scaffold002 rebuild transcript 4284088 4284679 . - . gene_id "RvY_04877"; transcript_id "RvY_04877.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold002 rebuild exon 4284088 4284357 . - . gene_id "RvY_04877"; transcript_id "RvY_04877.1"; Scaffold002 rebuild exon 4284431 4284679 . - . gene_id "RvY_04877"; transcript_id "RvY_04877.1"; Scaffold002 rebuild transcript 4284628 4285053 . - . gene_id "RvY_04877"; transcript_id "RvY_04877.2"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold002 rebuild exon 4284628 4285053 . - . gene_id "RvY_04877"; transcript_id "RvY_04877.2"; Scaffold002 rebuild transcript 4284154 4284378 . + . gene_id "RvY_04878"; transcript_id "RvY_04878.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4284154 4284378 . + . gene_id "RvY_04878"; transcript_id "RvY_04878.1"; Scaffold002 rebuild transcript 4285487 4285981 . - . gene_id "RvY_04879"; transcript_id "RvY_04879.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4285487 4285644 . - . gene_id "RvY_04879"; transcript_id "RvY_04879.1"; Scaffold002 rebuild exon 4285921 4285981 . - . gene_id "RvY_04879"; transcript_id "RvY_04879.1"; Scaffold002 rebuild transcript 4286068 4286400 . + . gene_id "RvY_04880"; transcript_id "RvY_04880.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4286068 4286400 . + . gene_id "RvY_04880"; transcript_id "RvY_04880.1"; Scaffold002 rebuild transcript 4286609 4287329 . - . gene_id "RvY_04881"; transcript_id "RvY_04881.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4286609 4287015 . - . gene_id "RvY_04881"; transcript_id "RvY_04881.1"; Scaffold002 rebuild exon 4287077 4287329 . - . gene_id "RvY_04881"; transcript_id "RvY_04881.1"; Scaffold002 rebuild transcript 4287994 4292375 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; annotation "hypothetical protein."; Pfam "[Rhodanese] Rhodanese-like domain|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; Scaffold002 rebuild exon 4287994 4288103 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4288370 4288511 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4288608 4288684 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4288796 4289098 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4289171 4289330 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4289644 4290439 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4290504 4290781 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4290857 4291146 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4291215 4291569 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4291851 4292160 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild exon 4292236 4292375 . + . gene_id "RvY_04882"; transcript_id "RvY_04882.1"; Scaffold002 rebuild transcript 4292735 4293563 . - . gene_id "RvY_04883"; transcript_id "RvY_04883.1"; annotation "hypothetical protein."; Pfam "[Nop16] Ribosome biogenesis protein Nop16"; similar_genes "NOP16_XENLA(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 4292735 4292875 . - . gene_id "RvY_04883"; transcript_id "RvY_04883.1"; Scaffold002 rebuild exon 4292959 4293144 . - . gene_id "RvY_04883"; transcript_id "RvY_04883.1"; Scaffold002 rebuild exon 4293250 4293358 . - . gene_id "RvY_04883"; transcript_id "RvY_04883.1"; Scaffold002 rebuild exon 4293460 4293563 . - . gene_id "RvY_04883"; transcript_id "RvY_04883.1"; Scaffold002 rebuild transcript 4295384 4296214 . + . gene_id "RvY_04884"; transcript_id "RvY_04884.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4295384 4296214 . + . gene_id "RvY_04884"; transcript_id "RvY_04884.1"; Scaffold002 rebuild transcript 4296539 4297386 . - . gene_id "RvY_04885"; transcript_id "RvY_04885.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold002 rebuild exon 4296539 4296794 . - . gene_id "RvY_04885"; transcript_id "RvY_04885.1"; Scaffold002 rebuild exon 4296900 4297010 . - . gene_id "RvY_04885"; transcript_id "RvY_04885.1"; Scaffold002 rebuild exon 4297118 4297386 . - . gene_id "RvY_04885"; transcript_id "RvY_04885.1"; Scaffold002 rebuild transcript 4298267 4299877 . + . gene_id "RvY_04886"; transcript_id "RvY_04886.1"; gene_name "Arl9_Arfrp2_like"; annotation "hypothetical protein."; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date."; Scaffold002 rebuild exon 4298267 4298509 . + . gene_id "RvY_04886"; transcript_id "RvY_04886.1"; Scaffold002 rebuild exon 4298929 4299057 . + . gene_id "RvY_04886"; transcript_id "RvY_04886.1"; Scaffold002 rebuild exon 4299158 4299215 . + . gene_id "RvY_04886"; transcript_id "RvY_04886.1"; Scaffold002 rebuild exon 4299328 4299509 . + . gene_id "RvY_04886"; transcript_id "RvY_04886.1"; Scaffold002 rebuild exon 4299662 4299877 . + . gene_id "RvY_04886"; transcript_id "RvY_04886.1"; Scaffold002 rebuild transcript 4300289 4300767 . - . gene_id "RvY_04887"; transcript_id "RvY_04887.1"; annotation "hypothetical protein."; Pfam "[HIG_1_N] Hypoxia induced protein conserved region"; Scaffold002 rebuild exon 4300289 4300452 . - . gene_id "RvY_04887"; transcript_id "RvY_04887.1"; Scaffold002 rebuild exon 4300596 4300767 . - . gene_id "RvY_04887"; transcript_id "RvY_04887.1"; Scaffold002 rebuild transcript 4301366 4302727 . + . gene_id "RvY_04888"; transcript_id "RvY_04888.1"; annotation "hypothetical protein."; Pfam "[DDRGK]"; similar_genes "DDRGK_HUMAN(e-value:4.4e-22;bit-score:102.0)"; Scaffold002 rebuild exon 4301366 4301492 . + . gene_id "RvY_04888"; transcript_id "RvY_04888.1"; Scaffold002 rebuild exon 4301619 4301729 . + . gene_id "RvY_04888"; transcript_id "RvY_04888.1"; Scaffold002 rebuild exon 4301825 4302051 . + . gene_id "RvY_04888"; transcript_id "RvY_04888.1"; Scaffold002 rebuild exon 4302162 4302371 . + . gene_id "RvY_04888"; transcript_id "RvY_04888.1"; Scaffold002 rebuild exon 4302521 4302727 . + . gene_id "RvY_04888"; transcript_id "RvY_04888.1"; Scaffold002 rebuild transcript 4303535 4304920 . - . gene_id "RvY_04889"; transcript_id "RvY_04889.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4303535 4304168 . - . gene_id "RvY_04889"; transcript_id "RvY_04889.1"; Scaffold002 rebuild exon 4304829 4304920 . - . gene_id "RvY_04889"; transcript_id "RvY_04889.1"; Scaffold002 rebuild transcript 4304994 4306309 . - . gene_id "RvY_04890"; transcript_id "RvY_04890.1"; annotation "hypothetical protein."; KO "K15189"; Scaffold002 rebuild exon 4304994 4305093 . - . gene_id "RvY_04890"; transcript_id "RvY_04890.1"; Scaffold002 rebuild exon 4305396 4306309 . - . gene_id "RvY_04890"; transcript_id "RvY_04890.1"; Scaffold002 rebuild transcript 4305392 4306309 . - . gene_id "RvY_04890"; transcript_id "RvY_04890.2"; annotation "hypothetical protein."; KO "K15189"; Scaffold002 rebuild exon 4305392 4306309 . - . gene_id "RvY_04890"; transcript_id "RvY_04890.2"; Scaffold002 rebuild transcript 4307546 4308941 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; annotation "hypothetical protein."; Pfam "[UPF0121] Uncharacterised protein family (UPF0121)"; similar_genes "KRH2_DROME(e-value:2.3e-10;bit-score:63.0)"; Scaffold002 rebuild exon 4307546 4307632 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild exon 4307764 4307855 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild exon 4307932 4307979 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild exon 4308087 4308235 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild exon 4308338 4308405 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild exon 4308540 4308754 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild exon 4308815 4308941 . + . gene_id "RvY_04891"; transcript_id "RvY_04891.1"; Scaffold002 rebuild transcript 4309514 4312039 . - . gene_id "RvY_04892"; transcript_id "RvY_04892.1"; annotation "hypothetical protein."; Pfam "[DUF2152] Uncharacterized conserved protein (DUF2152)"; Scaffold002 rebuild exon 4309514 4310129 . - . gene_id "RvY_04892"; transcript_id "RvY_04892.1"; Scaffold002 rebuild exon 4310449 4310949 . - . gene_id "RvY_04892"; transcript_id "RvY_04892.1"; Scaffold002 rebuild exon 4311011 4311357 . - . gene_id "RvY_04892"; transcript_id "RvY_04892.1"; Scaffold002 rebuild exon 4311584 4312039 . - . gene_id "RvY_04892"; transcript_id "RvY_04892.1"; Scaffold002 rebuild transcript 4312337 4313011 . - . gene_id "RvY_04893"; transcript_id "RvY_04893.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4312337 4312456 . - . gene_id "RvY_04893"; transcript_id "RvY_04893.1"; Scaffold002 rebuild exon 4312823 4313011 . - . gene_id "RvY_04893"; transcript_id "RvY_04893.1"; Scaffold002 rebuild transcript 4312724 4313011 . - . gene_id "RvY_04893"; transcript_id "RvY_04893.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4312724 4313011 . - . gene_id "RvY_04893"; transcript_id "RvY_04893.2"; Scaffold002 rebuild transcript 4313524 4314522 . + . gene_id "RvY_04894"; transcript_id "RvY_04894.1"; annotation "hypothetical protein."; Pfam "[F-box-like]"; Scaffold002 rebuild exon 4313524 4313602 . + . gene_id "RvY_04894"; transcript_id "RvY_04894.1"; Scaffold002 rebuild exon 4313670 4313910 . + . gene_id "RvY_04894"; transcript_id "RvY_04894.1"; Scaffold002 rebuild exon 4313991 4314522 . + . gene_id "RvY_04894"; transcript_id "RvY_04894.1"; Scaffold002 rebuild transcript 4324204 4326479 . + . gene_id "RvY_04895"; transcript_id "RvY_04895.1"; gene_name "NPYNR"; annotation "neuropeptide Y receptor, invertebrate"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K04209"; Scaffold002 rebuild exon 4324204 4324314 . + . gene_id "RvY_04895"; transcript_id "RvY_04895.1"; Scaffold002 rebuild exon 4324677 4324925 . + . gene_id "RvY_04895"; transcript_id "RvY_04895.1"; Scaffold002 rebuild exon 4325580 4326479 . + . gene_id "RvY_04895"; transcript_id "RvY_04895.1"; Scaffold002 rebuild transcript 4329331 4335212 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; annotation "putative Activin receptor type-2B"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; EC "EC2.7.11.30"; KO "K13596"; similar_genes "AVR2B_XENLA(e-value:6.9e-29;bit-score:125.0)"; Scaffold002 rebuild exon 4329331 4329370 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4331371 4331555 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4331617 4331765 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4331878 4332068 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4332195 4332355 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4332517 4332639 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4333853 4334033 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4334150 4334391 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4334561 4334833 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild exon 4335063 4335212 . + . gene_id "RvY_04896"; transcript_id "RvY_04896.1"; Scaffold002 rebuild transcript 4336760 4338002 . - . gene_id "RvY_04897"; transcript_id "RvY_04897.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold002 rebuild exon 4336760 4337040 . - . gene_id "RvY_04897"; transcript_id "RvY_04897.1"; Scaffold002 rebuild exon 4337136 4337315 . - . gene_id "RvY_04897"; transcript_id "RvY_04897.1"; Scaffold002 rebuild exon 4337523 4337660 . - . gene_id "RvY_04897"; transcript_id "RvY_04897.1"; Scaffold002 rebuild exon 4337768 4338002 . - . gene_id "RvY_04897"; transcript_id "RvY_04897.1"; Scaffold002 rebuild transcript 4340605 4346450 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:1.2e-13;bit-score:74.0)"; Scaffold002 rebuild exon 4340605 4340726 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild exon 4340843 4341081 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild exon 4341171 4341450 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild exon 4341516 4342029 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild exon 4342217 4343300 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild exon 4343367 4344230 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild exon 4344391 4346450 . + . gene_id "RvY_04898"; transcript_id "RvY_04898.1"; Scaffold002 rebuild transcript 4349086 4362064 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4349086 4349368 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4349511 4351524 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4351585 4351925 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4352087 4352533 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4352618 4352668 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4352952 4354064 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4354261 4354812 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4354953 4356314 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4356616 4357032 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4357104 4357283 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4357357 4357581 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4357653 4357817 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4357873 4358103 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4358215 4358967 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4359157 4359504 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4359766 4360377 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4360600 4361562 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild exon 4361748 4362064 . + . gene_id "RvY_04899"; transcript_id "RvY_04899.1"; Scaffold002 rebuild transcript 4362437 4363913 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; gene_name "PSMD8"; annotation "26S proteasome regulatory subunit N12"; Pfam "[PCI_Csn8] COP9 signalosome, subunit CSN8|[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; KO "K03031"; Scaffold002 rebuild exon 4362437 4362634 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; Scaffold002 rebuild exon 4362769 4362880 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; Scaffold002 rebuild exon 4362981 4363247 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; Scaffold002 rebuild exon 4363471 4363573 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; Scaffold002 rebuild exon 4363665 4363737 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; Scaffold002 rebuild exon 4363803 4363913 . - . gene_id "RvY_04900"; transcript_id "RvY_04900.1"; Scaffold002 rebuild transcript 4369172 4369408 . - . gene_id "RvY_04901"; transcript_id "RvY_04901.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4369172 4369408 . - . gene_id "RvY_04901"; transcript_id "RvY_04901.1"; Scaffold002 rebuild transcript 4370765 4374036 . + . gene_id "RvY_04902"; transcript_id "RvY_04902.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4370765 4370831 . + . gene_id "RvY_04902"; transcript_id "RvY_04902.1"; Scaffold002 rebuild exon 4371960 4372578 . + . gene_id "RvY_04902"; transcript_id "RvY_04902.1"; Scaffold002 rebuild exon 4372638 4372799 . + . gene_id "RvY_04902"; transcript_id "RvY_04902.1"; Scaffold002 rebuild exon 4373299 4373715 . + . gene_id "RvY_04902"; transcript_id "RvY_04902.1"; Scaffold002 rebuild exon 4373787 4374036 . + . gene_id "RvY_04902"; transcript_id "RvY_04902.1"; Scaffold002 rebuild transcript 4374064 4375328 . + . gene_id "RvY_04903"; transcript_id "RvY_04903.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 4374064 4374133 . + . gene_id "RvY_04903"; transcript_id "RvY_04903.1"; Scaffold002 rebuild exon 4374524 4374810 . + . gene_id "RvY_04903"; transcript_id "RvY_04903.1"; Scaffold002 rebuild exon 4374879 4375328 . + . gene_id "RvY_04903"; transcript_id "RvY_04903.1"; Scaffold002 rebuild transcript 4376093 4376957 . + . gene_id "RvY_04904"; transcript_id "RvY_04904.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4376093 4376440 . + . gene_id "RvY_04904"; transcript_id "RvY_04904.1"; Scaffold002 rebuild exon 4376584 4376736 . + . gene_id "RvY_04904"; transcript_id "RvY_04904.1"; Scaffold002 rebuild exon 4376847 4376957 . + . gene_id "RvY_04904"; transcript_id "RvY_04904.1"; Scaffold002 rebuild transcript 4382405 4387953 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; annotation "Exportin-7"; similar_genes "XPO7_HUMAN(e-value:1.0e-59;bit-score:227.0)"; Scaffold002 rebuild exon 4382405 4382422 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4382540 4382686 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4382754 4382844 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4382924 4382994 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4383089 4383184 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4383258 4383332 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4383423 4383566 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4383653 4383776 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4383919 4384115 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4384198 4384344 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4384432 4384798 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4384900 4385005 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4385100 4385303 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4385373 4385517 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4385600 4385747 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4385838 4386188 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4386300 4386514 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4386593 4386731 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4386804 4387063 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4387146 4387273 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4387586 4387737 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild exon 4387898 4387953 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.1"; Scaffold002 rebuild transcript 4382405 4387760 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; annotation "Exportin-7"; similar_genes "XPO7_HUMAN(e-value:1.0e-59;bit-score:227.0)"; Scaffold002 rebuild exon 4382405 4382422 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4382540 4382686 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4382754 4382844 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4382924 4382994 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4383089 4383184 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4383258 4383332 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4383423 4383566 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4383653 4383776 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4383919 4384115 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4384198 4384344 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4384432 4384798 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4384900 4385005 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4385100 4385303 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4385373 4385517 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4385600 4385747 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4385838 4386188 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4386300 4386514 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4386593 4386731 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4386804 4387063 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4387146 4387273 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild exon 4387586 4387760 . + . gene_id "RvY_04905"; transcript_id "RvY_04905.2"; Scaffold002 rebuild transcript 4388588 4392780 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; gene_name "FBXW1_11"; annotation "F-box/WD repeat-containing protein 1A"; Pfam "[Beta-TrCP_D] D domain of beta-TrCP|[WD40] WD domain, G-beta repeat|[F-box-like]|[Nucleoporin_N] Nup133 N terminal like"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K03362"; similar_genes "FBW1A_HUMAN(e-value:2.9e-161;bit-score:565.0)"; Scaffold002 rebuild exon 4388588 4388791 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4388871 4388949 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4389008 4389118 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4389216 4389334 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4389407 4389775 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4390251 4390388 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4390482 4390572 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4390636 4390822 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4390937 4391375 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild exon 4392718 4392780 . - . gene_id "RvY_04906"; transcript_id "RvY_04906.1"; Scaffold002 rebuild transcript 4395707 4398195 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; gene_name "(1)ARSI_J(2)SLC16A13(3)2A0113"; annotation "(1)arylsulfatase I/J [EC:3.1.6.-](2)MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 13(3)hypothetical protein."; Pfam "(1,2)[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|(2,3)[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter|(2,3)[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1)Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism](2,3)monocarboxylate transporter 1."; EC "(1)EC3.1.6.-|EC3.1.6.12"; KO "(1)K12375(2)K08189"; similar_genes "(1)ARSB_MOUSE(e-value:3.6e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4395707 4395785 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4395847 4395992 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396066 4396187 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396245 4396282 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396354 4396466 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396533 4396569 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396632 4396705 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396783 4396917 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4396994 4397120 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4397181 4397370 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4397441 4397657 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4397720 4397814 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild exon 4397880 4398195 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.1"; Scaffold002 rebuild transcript 4393814 4396200 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; gene_name "(1)ARSI_J(2)SLC16A13(3)2A0113"; annotation "(1)arylsulfatase I/J [EC:3.1.6.-](2)MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 13(3)hypothetical protein."; Pfam "(1,2)[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|(2,3)[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter|(2,3)[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1)Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism](2,3)monocarboxylate transporter 1."; EC "(1)EC3.1.6.-|EC3.1.6.12"; KO "(1)K12375(2)K08189"; similar_genes "(1)ARSB_MOUSE(e-value:3.6e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4393814 4393994 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4394089 4394159 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4394228 4394300 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4394434 4394569 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4394632 4394751 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4394836 4395172 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4395235 4395271 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4395328 4395453 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4395648 4395785 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4395847 4395992 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild exon 4396066 4396200 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.2"; Scaffold002 rebuild transcript 4393814 4395458 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; gene_name "(1)ARSI_J(2)SLC16A13(3)2A0113"; annotation "(1)arylsulfatase I/J [EC:3.1.6.-](2)MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 13(3)hypothetical protein."; Pfam "(1,2)[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|(2,3)[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter|(2,3)[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1)Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism](2,3)monocarboxylate transporter 1."; EC "(1)EC3.1.6.-|EC3.1.6.12"; KO "(1)K12375(2)K08189"; similar_genes "(1)ARSB_MOUSE(e-value:3.6e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4393814 4393994 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4394089 4394159 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4394228 4394300 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4394434 4394569 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4394632 4394751 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4394836 4395172 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4395235 4395271 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild exon 4395328 4395458 . + . gene_id "RvY_04907"; transcript_id "RvY_04907.3"; Scaffold002 rebuild transcript 4398667 4408194 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; gene_name "OS9"; annotation "amplified in osteosarcoma"; Pfam "[PRKCSH] Glucosidase II beta subunit-like protein|[PRKCSH_1] Glucosidase II beta subunit-like protein"; KO "K10088"; Scaffold002 rebuild exon 4398667 4398998 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4399192 4399405 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4399484 4399926 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4400117 4400339 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4401381 4401654 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4401710 4401855 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4401929 4402384 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4402459 4403100 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4403310 4403837 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4404479 4404903 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4404967 4405192 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4405259 4405526 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4405599 4405741 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4405895 4406353 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4406610 4407386 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4407477 4407620 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4407701 4407913 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild exon 4408012 4408194 . - . gene_id "RvY_04908"; transcript_id "RvY_04908.1"; Scaffold002 rebuild transcript 4408791 4410241 . + . gene_id "RvY_04909"; transcript_id "RvY_04909.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 4408791 4408904 . + . gene_id "RvY_04909"; transcript_id "RvY_04909.1"; Scaffold002 rebuild exon 4408967 4409309 . + . gene_id "RvY_04909"; transcript_id "RvY_04909.1"; Scaffold002 rebuild exon 4409397 4410241 . + . gene_id "RvY_04909"; transcript_id "RvY_04909.1"; Scaffold002 rebuild transcript 4415639 4416064 . - . gene_id "RvY_04910"; transcript_id "RvY_04910.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 4415639 4416064 . - . gene_id "RvY_04910"; transcript_id "RvY_04910.1"; Scaffold002 rebuild transcript 4416130 4416342 . - . gene_id "RvY_04911"; transcript_id "RvY_04911.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4416130 4416342 . - . gene_id "RvY_04911"; transcript_id "RvY_04911.1"; Scaffold002 rebuild transcript 4416437 4418904 . - . gene_id "RvY_04912"; transcript_id "RvY_04912.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4416437 4416679 . - . gene_id "RvY_04912"; transcript_id "RvY_04912.1"; Scaffold002 rebuild exon 4418072 4418491 . - . gene_id "RvY_04912"; transcript_id "RvY_04912.1"; Scaffold002 rebuild exon 4418548 4418904 . - . gene_id "RvY_04912"; transcript_id "RvY_04912.1"; Scaffold002 rebuild transcript 4418964 4420692 . - . gene_id "RvY_04913"; transcript_id "RvY_04913.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4418964 4419486 . - . gene_id "RvY_04913"; transcript_id "RvY_04913.1"; Scaffold002 rebuild exon 4419747 4419806 . - . gene_id "RvY_04913"; transcript_id "RvY_04913.1"; Scaffold002 rebuild exon 4419994 4420190 . - . gene_id "RvY_04913"; transcript_id "RvY_04913.1"; Scaffold002 rebuild exon 4420250 4420500 . - . gene_id "RvY_04913"; transcript_id "RvY_04913.1"; Scaffold002 rebuild exon 4420575 4420692 . - . gene_id "RvY_04913"; transcript_id "RvY_04913.1"; Scaffold002 rebuild transcript 4421677 4422956 . + . gene_id "RvY_04914"; transcript_id "RvY_04914.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4421677 4421686 . + . gene_id "RvY_04914"; transcript_id "RvY_04914.1"; Scaffold002 rebuild exon 4421783 4422316 . + . gene_id "RvY_04914"; transcript_id "RvY_04914.1"; Scaffold002 rebuild exon 4422561 4422721 . + . gene_id "RvY_04914"; transcript_id "RvY_04914.1"; Scaffold002 rebuild exon 4422810 4422956 . + . gene_id "RvY_04914"; transcript_id "RvY_04914.1"; Scaffold002 rebuild transcript 4424170 4437111 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; gene_name "SR"; annotation "hypothetical protein."; Pfam "[SRCR] Scavenger receptor cysteine-rich domain|[Beta_helix] Right handed beta helix region"; CDD "Scavenger receptor Cys-rich. The sea ucrhin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO."; EC "EC3.4.21.-"; similar_genes "NETR_PANTR(e-value:4.0e-12;bit-score:69.0)"; Scaffold002 rebuild exon 4424170 4424451 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4425623 4425828 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4426006 4426196 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4427390 4427566 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4427966 4428127 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4428190 4428419 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4428598 4430299 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4430368 4431303 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4431368 4431892 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4432029 4432640 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4432743 4433423 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4433576 4434019 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4434093 4434647 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4434712 4435367 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4435523 4435994 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild exon 4436165 4437111 . + . gene_id "RvY_04915"; transcript_id "RvY_04915.1"; Scaffold002 rebuild transcript 4440510 4444286 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; gene_name "MRP_assoc_pro"; annotation "(1)Canalicular multispecific organic anion transporter 2(2)putative Multidrug resistance-associated protein 1(3)Multidrug resistance-associated protein 1"; Pfam "(1)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(1,3)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "(1)MRP3_MOUSE(e-value:2.0e-111;bit-score:399.0)(2)MRP1_CANFA(e-value:3.2e-35;bit-score:146.0)(3)MRP1_CHICK(e-value:2.9e-74;bit-score:276.0)"; Scaffold002 rebuild exon 4440510 4440578 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4440643 4440772 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4440863 4440998 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4441296 4442008 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4442072 4442313 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4442397 4442465 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4442586 4442785 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4442862 4442988 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4443056 4443469 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4443627 4443793 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4443899 4444093 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild exon 4444175 4444286 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.1"; Scaffold002 rebuild transcript 4437630 4440599 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; gene_name "MRP_assoc_pro"; annotation "(1)Canalicular multispecific organic anion transporter 2(2)putative Multidrug resistance-associated protein 1(3)Multidrug resistance-associated protein 1"; Pfam "(1)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(1,3)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "(1)MRP3_MOUSE(e-value:2.0e-111;bit-score:399.0)(2)MRP1_CANFA(e-value:3.2e-35;bit-score:146.0)(3)MRP1_CHICK(e-value:2.9e-74;bit-score:276.0)"; Scaffold002 rebuild exon 4437630 4437728 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4437804 4437980 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4438063 4438194 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4438261 4438395 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4438471 4438596 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4438664 4438725 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4438802 4438933 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4438992 4439144 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4439201 4439494 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4439575 4439713 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4439774 4439905 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4439982 4440200 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild exon 4440267 4440599 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.2"; Scaffold002 rebuild transcript 4439834 4442804 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; gene_name "MRP_assoc_pro"; annotation "(1)Canalicular multispecific organic anion transporter 2(2)putative Multidrug resistance-associated protein 1(3)Multidrug resistance-associated protein 1"; Pfam "(1)[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|(1,3)[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "(1)MRP3_MOUSE(e-value:2.0e-111;bit-score:399.0)(2)MRP1_CANFA(e-value:3.2e-35;bit-score:146.0)(3)MRP1_CHICK(e-value:2.9e-74;bit-score:276.0)"; Scaffold002 rebuild exon 4439834 4439905 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4439982 4440200 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4440267 4440578 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4440643 4440772 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4440863 4440998 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4441296 4442008 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4442072 4442313 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4442397 4442465 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild exon 4442586 4442804 . + . gene_id "RvY_04916"; transcript_id "RvY_04916.3"; Scaffold002 rebuild transcript 4445164 4448289 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold002 rebuild exon 4445164 4445452 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4445517 4445785 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4445893 4446057 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4446146 4446384 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4446463 4446802 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4446895 4446990 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4447047 4447153 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4447243 4447312 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4447386 4447652 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4447709 4447982 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild exon 4448057 4448289 . + . gene_id "RvY_04917"; transcript_id "RvY_04917.1"; Scaffold002 rebuild transcript 4449245 4451415 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; gene_name "ERG3"; annotation "putative Transmembrane protein 195"; Pfam "[FA_hydroxylase] Fatty acid hydroxylase superfamily"; CDD "Sterol desaturase [Lipid metabolism]"; KO "K15537"; similar_genes "TM195_XENTR(e-value:9.1e-29;bit-score:125.0)"; Scaffold002 rebuild exon 4449245 4449469 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4449543 4449670 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4449735 4449843 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4449924 4449966 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4450047 4450224 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4450337 4450369 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4450440 4450830 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild exon 4451008 4451415 . + . gene_id "RvY_04918"; transcript_id "RvY_04918.1"; Scaffold002 rebuild transcript 4451492 4451963 . - . gene_id "RvY_04919"; transcript_id "RvY_04919.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4451492 4451622 . - . gene_id "RvY_04919"; transcript_id "RvY_04919.1"; Scaffold002 rebuild exon 4451855 4451963 . - . gene_id "RvY_04919"; transcript_id "RvY_04919.1"; Scaffold002 rebuild transcript 4451965 4453023 . + . gene_id "RvY_04920"; transcript_id "RvY_04920.1"; gene_name "folE"; annotation "GTP cyclohydrolase 1"; Pfam "[GTP_cyclohydroI] GTP cyclohydrolase I"; CDD "GTP cyclohydrolase I; Provisional"; EC "EC3.5.4.16"; KO "K01495"; similar_genes "GCH1_HUMAN(e-value:1.1e-73;bit-score:274.0)"; Scaffold002 rebuild exon 4451965 4452268 . + . gene_id "RvY_04920"; transcript_id "RvY_04920.1"; Scaffold002 rebuild exon 4452422 4452661 . + . gene_id "RvY_04920"; transcript_id "RvY_04920.1"; Scaffold002 rebuild exon 4452721 4452763 . + . gene_id "RvY_04920"; transcript_id "RvY_04920.1"; Scaffold002 rebuild exon 4452897 4453023 . + . gene_id "RvY_04920"; transcript_id "RvY_04920.1"; Scaffold002 rebuild transcript 4453453 4456360 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; gene_name "NEUR"; annotation "protein neuralized"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[Neuralized]"; CDD "domain in neuralized proteins."; KO "K01931"; similar_genes "NEUR_DROME(e-value:1.2e-09;bit-score:61.0)"; Scaffold002 rebuild exon 4453453 4453587 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild exon 4453758 4454242 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild exon 4454351 4454591 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild exon 4454672 4455165 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild exon 4455357 4455566 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild exon 4455658 4455843 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild exon 4456135 4456360 . - . gene_id "RvY_04921"; transcript_id "RvY_04921.1"; Scaffold002 rebuild transcript 4458616 4459751 . - . gene_id "RvY_04922"; transcript_id "RvY_04922.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4458616 4458708 . - . gene_id "RvY_04922"; transcript_id "RvY_04922.1"; Scaffold002 rebuild exon 4458908 4459234 . - . gene_id "RvY_04922"; transcript_id "RvY_04922.1"; Scaffold002 rebuild exon 4459333 4459573 . - . gene_id "RvY_04922"; transcript_id "RvY_04922.1"; Scaffold002 rebuild exon 4459705 4459751 . - . gene_id "RvY_04922"; transcript_id "RvY_04922.1"; Scaffold002 rebuild transcript 4461471 4476176 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; gene_name "NEO1"; annotation "putative Neogenin"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Neogenin_C] Neogenin C-terminus"; CDD "First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain."; KO "K06766"; similar_genes "NEO1_MOUSE(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 4461471 4461540 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4469187 4469349 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4469508 4469665 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4470842 4471123 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4471220 4471510 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4471572 4471847 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4471934 4472290 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4472497 4472834 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4472907 4473357 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4473442 4473537 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4473606 4473929 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4474007 4474336 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4474403 4474538 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4474623 4474852 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4474993 4475106 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4475179 4475523 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4475790 4475986 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild exon 4476072 4476176 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.1"; Scaffold002 rebuild transcript 4461471 4476176 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; gene_name "NEO1"; annotation "putative Neogenin"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Neogenin_C] Neogenin C-terminus"; CDD "First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain."; KO "K06766"; similar_genes "NEO1_MOUSE(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 4461471 4461540 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4469187 4469349 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4469508 4469665 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4470842 4471123 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4471220 4471510 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4471572 4471847 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4471979 4472290 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4472497 4472834 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4472907 4473357 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4473442 4473537 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4473606 4473929 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4474007 4474336 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4474403 4474538 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4474623 4474852 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4474993 4475106 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4475179 4475523 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4475790 4475986 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild exon 4476072 4476176 . + . gene_id "RvY_04923"; transcript_id "RvY_04923.2"; Scaffold002 rebuild transcript 4477586 4480029 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "SSRL_TAKRU(e-value:2.7e-11;bit-score:67.0)"; Scaffold002 rebuild exon 4477586 4477786 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4477907 4478064 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4478413 4478496 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4478656 4478741 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4478819 4478891 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4478978 4479081 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4479147 4479309 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild exon 4479381 4480029 . + . gene_id "RvY_04924"; transcript_id "RvY_04924.1"; Scaffold002 rebuild transcript 4486514 4487732 . - . gene_id "RvY_04925"; transcript_id "RvY_04925.1"; gene_name "MSX"; annotation "putative Homeobox protein XHOX-7.1'"; Pfam "[Homeobox]"; KO "K09341"; similar_genes "HOX7P_XENLA(e-value:1.6e-34;bit-score:144.0)"; Scaffold002 rebuild exon 4486514 4486780 . - . gene_id "RvY_04925"; transcript_id "RvY_04925.1"; Scaffold002 rebuild exon 4487133 4487341 . - . gene_id "RvY_04925"; transcript_id "RvY_04925.1"; Scaffold002 rebuild exon 4487447 4487732 . - . gene_id "RvY_04925"; transcript_id "RvY_04925.1"; Scaffold002 rebuild transcript 4493614 4504973 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; gene_name "RRM"; annotation "Probable RNA-binding protein orb2"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold002 rebuild exon 4493614 4493841 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4493901 4494082 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4494154 4494268 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4494350 4494468 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4494536 4494625 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4494688 4494903 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4497601 4497730 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild exon 4503786 4504973 . - . gene_id "RvY_04926"; transcript_id "RvY_04926.1"; Scaffold002 rebuild transcript 4506062 4506340 . + . gene_id "RvY_04927"; transcript_id "RvY_04927.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4506062 4506340 . + . gene_id "RvY_04927"; transcript_id "RvY_04927.1"; Scaffold002 rebuild transcript 4506726 4508235 . - . gene_id "RvY_04928"; transcript_id "RvY_04928.1"; gene_name "5-Mar"; annotation "E3 ubiquitin-protein ligase MARCH5 [EC:6.3.2.19]"; Pfam "[RINGv] RING-variant domain"; CDD "The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10660"; similar_genes "MARH5_CERAE(e-value:5.6e-20;bit-score:95.0)"; Scaffold002 rebuild exon 4506726 4507196 . - . gene_id "RvY_04928"; transcript_id "RvY_04928.1"; Scaffold002 rebuild exon 4507287 4507417 . - . gene_id "RvY_04928"; transcript_id "RvY_04928.1"; Scaffold002 rebuild exon 4507574 4507688 . - . gene_id "RvY_04928"; transcript_id "RvY_04928.1"; Scaffold002 rebuild exon 4507783 4507870 . - . gene_id "RvY_04928"; transcript_id "RvY_04928.1"; Scaffold002 rebuild exon 4507976 4508235 . - . gene_id "RvY_04928"; transcript_id "RvY_04928.1"; Scaffold002 rebuild transcript 4508579 4512029 . - . gene_id "RvY_04929"; transcript_id "RvY_04929.1"; gene_name "IARS"; annotation "isoleucyl-tRNA synthetase [EC:6.1.1.5]"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[Anticodon_1] Anticodon-binding domain of tRNA|[tRNA-synt_1e] tRNA synthetases class I (C) catalytic domain|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)"; CDD "isoleucyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.5"; KO "K01870"; similar_genes "SYIM_CHICK(e-value:2.2e-23;bit-score:107.0)"; Scaffold002 rebuild exon 4508579 4509765 . - . gene_id "RvY_04929"; transcript_id "RvY_04929.1"; Scaffold002 rebuild exon 4509844 4510372 . - . gene_id "RvY_04929"; transcript_id "RvY_04929.1"; Scaffold002 rebuild exon 4510444 4510920 . - . gene_id "RvY_04929"; transcript_id "RvY_04929.1"; Scaffold002 rebuild exon 4511171 4511511 . - . gene_id "RvY_04929"; transcript_id "RvY_04929.1"; Scaffold002 rebuild exon 4511579 4512029 . - . gene_id "RvY_04929"; transcript_id "RvY_04929.1"; Scaffold002 rebuild transcript 4512500 4514611 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; gene_name "MLYCD"; annotation "malonyl-CoA decarboxylase [EC:4.1.1.9]"; Pfam "[MCD] Malonyl-CoA decarboxylase (MCD)"; CDD "Malonyl-CoA decarboxylase (MCD). This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK)."; EC "EC4.1.1.9"; KO "K01578"; similar_genes "DCMC_HUMAN(e-value:3.0e-25;bit-score:113.0)"; Scaffold002 rebuild exon 4512500 4512802 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4512918 4513055 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4513138 4513275 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4513361 4513574 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4513639 4513833 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4513889 4514056 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4514121 4514321 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild exon 4514388 4514611 . + . gene_id "RvY_04930"; transcript_id "RvY_04930.1"; Scaffold002 rebuild transcript 4514852 4516496 . - . gene_id "RvY_04931"; transcript_id "RvY_04931.1"; gene_name "(1)PRK10263"; annotation "hypothetical protein."; CDD "(1)DNA translocase FtsK; Provisional"; Scaffold002 rebuild exon 4514852 4515897 . - . gene_id "RvY_04931"; transcript_id "RvY_04931.1"; Scaffold002 rebuild exon 4516019 4516166 . - . gene_id "RvY_04931"; transcript_id "RvY_04931.1"; Scaffold002 rebuild exon 4516419 4516496 . - . gene_id "RvY_04931"; transcript_id "RvY_04931.1"; Scaffold002 rebuild transcript 4514833 4515489 . - . gene_id "RvY_04931"; transcript_id "RvY_04931.2"; gene_name "(1)PRK10263"; annotation "hypothetical protein."; CDD "(1)DNA translocase FtsK; Provisional"; Scaffold002 rebuild exon 4514833 4515489 . - . gene_id "RvY_04931"; transcript_id "RvY_04931.2"; Scaffold002 rebuild transcript 4517319 4520587 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; annotation "putative Metabotropic glutamate receptor 1"; Pfam "[NCD3G] Nine Cysteines Domain of family 3 GPCR|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; similar_genes "GRM1_RAT(e-value:9.5e-35;bit-score:145.0)"; Scaffold002 rebuild exon 4517319 4518138 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4518353 4518498 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4518562 4518690 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4518750 4518785 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4518844 4518902 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4519000 4519282 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4519546 4519799 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4519885 4520011 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild exon 4520414 4520587 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.1"; Scaffold002 rebuild transcript 4517319 4520515 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; annotation "putative Metabotropic glutamate receptor 1"; Pfam "[NCD3G] Nine Cysteines Domain of family 3 GPCR|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; similar_genes "GRM1_RAT(e-value:9.5e-35;bit-score:145.0)"; Scaffold002 rebuild exon 4517319 4518138 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4518353 4518498 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4518562 4518690 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4518750 4518785 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4518844 4518902 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4519000 4519282 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4519546 4519799 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4519885 4520011 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild exon 4520414 4520515 . - . gene_id "RvY_04932"; transcript_id "RvY_04932.2"; Scaffold002 rebuild transcript 4525530 4526059 . - . gene_id "RvY_04933"; transcript_id "RvY_04933.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4525530 4525826 . - . gene_id "RvY_04933"; transcript_id "RvY_04933.1"; Scaffold002 rebuild exon 4526021 4526059 . - . gene_id "RvY_04933"; transcript_id "RvY_04933.1"; Scaffold002 rebuild transcript 4524561 4525545 . - . gene_id "RvY_04933"; transcript_id "RvY_04933.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4524561 4524691 . - . gene_id "RvY_04933"; transcript_id "RvY_04933.2"; Scaffold002 rebuild exon 4525401 4525545 . - . gene_id "RvY_04933"; transcript_id "RvY_04933.2"; Scaffold002 rebuild transcript 4527959 4528356 . - . gene_id "RvY_04934"; transcript_id "RvY_04934.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4527959 4527978 . - . gene_id "RvY_04934"; transcript_id "RvY_04934.1"; Scaffold002 rebuild exon 4528068 4528356 . - . gene_id "RvY_04934"; transcript_id "RvY_04934.1"; Scaffold002 rebuild transcript 4529940 4530134 . - . gene_id "RvY_04935"; transcript_id "RvY_04935.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4529940 4530134 . - . gene_id "RvY_04935"; transcript_id "RvY_04935.1"; Scaffold002 rebuild transcript 4530331 4531310 . + . gene_id "RvY_04936"; transcript_id "RvY_04936.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4530331 4530338 . + . gene_id "RvY_04936"; transcript_id "RvY_04936.1"; Scaffold002 rebuild exon 4530523 4530679 . + . gene_id "RvY_04936"; transcript_id "RvY_04936.1"; Scaffold002 rebuild exon 4530942 4531310 . + . gene_id "RvY_04936"; transcript_id "RvY_04936.1"; Scaffold002 rebuild transcript 4531882 4534538 . - . gene_id "RvY_04937"; transcript_id "RvY_04937.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4531882 4532141 . - . gene_id "RvY_04937"; transcript_id "RvY_04937.1"; Scaffold002 rebuild exon 4532218 4532367 . - . gene_id "RvY_04937"; transcript_id "RvY_04937.1"; Scaffold002 rebuild exon 4532480 4532590 . - . gene_id "RvY_04937"; transcript_id "RvY_04937.1"; Scaffold002 rebuild exon 4532973 4533800 . - . gene_id "RvY_04937"; transcript_id "RvY_04937.1"; Scaffold002 rebuild exon 4533923 4534538 . - . gene_id "RvY_04937"; transcript_id "RvY_04937.1"; Scaffold002 rebuild transcript 4535316 4540088 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 4535316 4535635 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4535699 4535967 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4536032 4536126 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4536199 4537415 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4537471 4538379 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4538449 4538664 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4538733 4538957 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4539237 4539818 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild exon 4539932 4540088 . - . gene_id "RvY_04938"; transcript_id "RvY_04938.1"; Scaffold002 rebuild transcript 4541274 4553509 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; gene_name "(1)Tryp_SPc(2)PRSS7"; annotation "(1)hypothetical protein.(2)protease, serine, 7 (enterokinase) [EC:3.4.21.9]"; Pfam "[DUF1986]|[Trypsin]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 4541274 4541668 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4541866 4542036 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4542100 4542253 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4542329 4542447 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4542537 4542790 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4542878 4543061 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4543135 4543304 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4543362 4543678 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4543736 4544093 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4544200 4544803 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4544989 4545469 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4545537 4546006 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4546075 4546383 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4546460 4547204 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4547321 4547736 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4547850 4547891 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4547974 4549615 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4549736 4550439 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4550621 4551297 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4551414 4551807 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4551874 4552280 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4552540 4552965 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild exon 4553145 4553509 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.1"; Scaffold002 rebuild transcript 4543352 4554944 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; gene_name "(1)Tryp_SPc(2)PRSS7"; annotation "(1)hypothetical protein.(2)protease, serine, 7 (enterokinase) [EC:3.4.21.9]"; Pfam "[DUF1986]|[Trypsin]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 4543352 4543678 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4543736 4544093 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4544200 4544803 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4544989 4545469 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4545537 4546006 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4546075 4546383 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4546460 4547204 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4547321 4547736 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4547850 4547891 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4547974 4549615 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4549736 4550439 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4550621 4551297 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4551414 4551807 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4551874 4552280 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4552540 4552965 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4553145 4553580 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4553646 4553750 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4553824 4553910 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4553976 4554095 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4554165 4554278 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4554334 4554445 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild exon 4554501 4554944 . - . gene_id "RvY_04939"; transcript_id "RvY_04939.2"; Scaffold002 rebuild transcript 4559066 4560330 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4559066 4559205 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; Scaffold002 rebuild exon 4559266 4559507 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; Scaffold002 rebuild exon 4559572 4559678 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; Scaffold002 rebuild exon 4559803 4559942 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; Scaffold002 rebuild exon 4560022 4560226 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; Scaffold002 rebuild exon 4560319 4560330 . - . gene_id "RvY_04940"; transcript_id "RvY_04940.1"; Scaffold002 rebuild transcript 4562333 4562836 . + . gene_id "RvY_04941"; transcript_id "RvY_04941.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1)ADA2C_DIDMA(e-value:1.6e-11;bit-score:67.0)"; Scaffold002 rebuild exon 4562333 4562836 . + . gene_id "RvY_04941"; transcript_id "RvY_04941.1"; Scaffold002 rebuild transcript 4561953 4562442 . + . gene_id "RvY_04941"; transcript_id "RvY_04941.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1)ADA2C_DIDMA(e-value:1.6e-11;bit-score:67.0)"; Scaffold002 rebuild exon 4561953 4562213 . + . gene_id "RvY_04941"; transcript_id "RvY_04941.2"; Scaffold002 rebuild exon 4562299 4562442 . + . gene_id "RvY_04941"; transcript_id "RvY_04941.2"; Scaffold002 rebuild transcript 4564434 4567776 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4564434 4564500 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4564561 4564642 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4564709 4564849 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4565094 4565141 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4565208 4565297 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4565352 4565594 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4565846 4566055 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4566124 4566357 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4566526 4566723 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4566796 4567425 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4567492 4567554 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild exon 4567614 4567776 . - . gene_id "RvY_04942"; transcript_id "RvY_04942.1"; Scaffold002 rebuild transcript 4567802 4568017 . + . gene_id "RvY_04943"; transcript_id "RvY_04943.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4567802 4568017 . + . gene_id "RvY_04943"; transcript_id "RvY_04943.1"; Scaffold002 rebuild transcript 4569022 4572726 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; gene_name "Synapsin_C"; annotation "putative Synapsin-3"; Pfam "[Synapsin] Synapsin, N-terminal domain|[Synapsin_C] Synapsin, ATP binding domain"; CDD "Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown."; similar_genes "SYN3_HUMAN(e-value:3.6e-32;bit-score:136.0)"; Scaffold002 rebuild exon 4569022 4570081 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild exon 4570146 4570601 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild exon 4570687 4570778 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild exon 4570862 4570919 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild exon 4571081 4571216 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild exon 4571695 4572109 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild exon 4572640 4572726 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.1"; Scaffold002 rebuild transcript 4569022 4572384 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; gene_name "Synapsin_C"; annotation "putative Synapsin-3"; Pfam "[Synapsin] Synapsin, N-terminal domain|[Synapsin_C] Synapsin, ATP binding domain"; CDD "Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown."; similar_genes "SYN3_HUMAN(e-value:3.6e-32;bit-score:136.0)"; Scaffold002 rebuild exon 4569022 4570081 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild exon 4570146 4570601 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild exon 4570687 4570778 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild exon 4570862 4570919 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild exon 4571081 4571216 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild exon 4571695 4572109 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild exon 4572361 4572384 . - . gene_id "RvY_04944"; transcript_id "RvY_04944.2"; Scaffold002 rebuild transcript 4573991 4577910 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; Scaffold002 rebuild exon 4573991 4574178 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4574273 4574387 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4575167 4575385 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4575457 4575552 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4575627 4575789 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4575853 4575984 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4576074 4576215 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4576301 4576341 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4576416 4576621 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4576695 4576891 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4577011 4577269 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4577329 4577618 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild exon 4577733 4577910 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.1"; Scaffold002 rebuild transcript 4575110 4577910 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; Scaffold002 rebuild exon 4575110 4575385 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4575457 4575552 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4575627 4575789 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4575853 4575984 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4576074 4576215 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4576301 4576341 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4576416 4576621 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4576695 4576891 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4577011 4577269 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4577329 4577618 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild exon 4577733 4577910 . - . gene_id "RvY_04945"; transcript_id "RvY_04945.2"; Scaffold002 rebuild transcript 4575274 4575931 . + . gene_id "RvY_04946"; transcript_id "RvY_04946.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4575274 4575360 . + . gene_id "RvY_04946"; transcript_id "RvY_04946.1"; Scaffold002 rebuild exon 4575872 4575931 . + . gene_id "RvY_04946"; transcript_id "RvY_04946.1"; Scaffold002 rebuild transcript 4578582 4579181 . - . gene_id "RvY_04947"; transcript_id "RvY_04947.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4578582 4579181 . - . gene_id "RvY_04947"; transcript_id "RvY_04947.1"; Scaffold002 rebuild transcript 4583220 4585249 . - . gene_id "RvY_04948"; transcript_id "RvY_04948.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 4583220 4584094 . - . gene_id "RvY_04948"; transcript_id "RvY_04948.1"; Scaffold002 rebuild exon 4584220 4584491 . - . gene_id "RvY_04948"; transcript_id "RvY_04948.1"; Scaffold002 rebuild exon 4584608 4584781 . - . gene_id "RvY_04948"; transcript_id "RvY_04948.1"; Scaffold002 rebuild exon 4584866 4585013 . - . gene_id "RvY_04948"; transcript_id "RvY_04948.1"; Scaffold002 rebuild exon 4585111 4585249 . - . gene_id "RvY_04948"; transcript_id "RvY_04948.1"; Scaffold002 rebuild transcript 4587083 4587573 . - . gene_id "RvY_04949"; transcript_id "RvY_04949.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 4587083 4587374 . - . gene_id "RvY_04949"; transcript_id "RvY_04949.1"; Scaffold002 rebuild exon 4587452 4587573 . - . gene_id "RvY_04949"; transcript_id "RvY_04949.1"; Scaffold002 rebuild transcript 4589919 4590892 . + . gene_id "RvY_04950"; transcript_id "RvY_04950.1"; gene_name "NKX3-2"; annotation "putative Homeobox protein Nkx-3.2"; Pfam "[Homeobox]"; KO "K09995"; similar_genes "NKX32_HUMAN(e-value:4.5e-26;bit-score:116.0)"; Scaffold002 rebuild exon 4589919 4590189 . + . gene_id "RvY_04950"; transcript_id "RvY_04950.1"; Scaffold002 rebuild exon 4590318 4590529 . + . gene_id "RvY_04950"; transcript_id "RvY_04950.1"; Scaffold002 rebuild exon 4590638 4590892 . + . gene_id "RvY_04950"; transcript_id "RvY_04950.1"; Scaffold002 rebuild transcript 4592090 4595308 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; gene_name "ACE"; annotation "putative Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold002 rebuild exon 4592090 4592129 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4592339 4592577 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4592643 4592916 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4593195 4593338 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4593414 4593626 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4593736 4594003 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4594100 4594150 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4594219 4594249 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4594323 4594380 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4594474 4594557 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4594619 4594763 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4594820 4595041 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild exon 4595125 4595308 . + . gene_id "RvY_04951"; transcript_id "RvY_04951.1"; Scaffold002 rebuild transcript 4596309 4598868 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K15002"; similar_genes "C340_ORYLA(e-value:8.4e-19;bit-score:92.0)"; Scaffold002 rebuild exon 4596309 4596370 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4596488 4596587 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4596687 4596839 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4596910 4597118 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4597218 4597363 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4597665 4598214 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4598297 4598521 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4598622 4598697 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild exon 4598782 4598868 . + . gene_id "RvY_04952"; transcript_id "RvY_04952.1"; Scaffold002 rebuild transcript 4600783 4601868 . - . gene_id "RvY_04953"; transcript_id "RvY_04953.1"; gene_name "RAB11A"; annotation "Ras-related protein Rab-11B"; Pfam "[AAA_22] AAA domain|[Miro] Miro-like protein|[Ras] Ras family|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07904"; similar_genes "RB11B_RAT(e-value:1.3e-91;bit-score:333.0)"; Scaffold002 rebuild exon 4600783 4601000 . - . gene_id "RvY_04953"; transcript_id "RvY_04953.1"; Scaffold002 rebuild exon 4601069 4601262 . - . gene_id "RvY_04953"; transcript_id "RvY_04953.1"; Scaffold002 rebuild exon 4601387 4601439 . - . gene_id "RvY_04953"; transcript_id "RvY_04953.1"; Scaffold002 rebuild exon 4601570 4601712 . - . gene_id "RvY_04953"; transcript_id "RvY_04953.1"; Scaffold002 rebuild exon 4601829 4601868 . - . gene_id "RvY_04953"; transcript_id "RvY_04953.1"; Scaffold002 rebuild transcript 4602698 4604929 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; gene_name "(1)ABCD4(2)COG4178"; annotation "(1)ATP-binding cassette, subfamily D (ALD), member 4(2)hypothetical protein."; Pfam "[ABC_membrane_2] ABC transporter transmembrane region 2|(1)[ABC_tran] ABC transporter"; CDD "ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]"; KO "(1)K05678"; similar_genes "(1)ABCD4_MOUSE(e-value:1.3e-21;bit-score:101.0)(2)ABCD4_HUMAN(e-value:1.1e-18;bit-score:91.0)"; Scaffold002 rebuild exon 4602698 4602853 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; Scaffold002 rebuild exon 4602937 4603076 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; Scaffold002 rebuild exon 4603145 4603261 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; Scaffold002 rebuild exon 4603363 4603488 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; Scaffold002 rebuild exon 4603589 4604628 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; Scaffold002 rebuild exon 4604715 4604929 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.1"; Scaffold002 rebuild transcript 4602526 4604636 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; gene_name "(1)ABCD4(2)COG4178"; annotation "(1)ATP-binding cassette, subfamily D (ALD), member 4(2)hypothetical protein."; Pfam "[ABC_membrane_2] ABC transporter transmembrane region 2|(1)[ABC_tran] ABC transporter"; CDD "ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]"; KO "(1)K05678"; similar_genes "(1)ABCD4_MOUSE(e-value:1.3e-21;bit-score:101.0)(2)ABCD4_HUMAN(e-value:1.1e-18;bit-score:91.0)"; Scaffold002 rebuild exon 4602526 4602655 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; Scaffold002 rebuild exon 4602726 4602853 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; Scaffold002 rebuild exon 4602937 4603076 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; Scaffold002 rebuild exon 4603145 4603261 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; Scaffold002 rebuild exon 4603363 4603488 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; Scaffold002 rebuild exon 4603589 4604636 . + . gene_id "RvY_04954"; transcript_id "RvY_04954.2"; Scaffold002 rebuild transcript 4605267 4605548 . - . gene_id "RvY_04955"; transcript_id "RvY_04955.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4605267 4605548 . - . gene_id "RvY_04955"; transcript_id "RvY_04955.1"; Scaffold002 rebuild transcript 4605598 4606197 . - . gene_id "RvY_04956"; transcript_id "RvY_04956.1"; annotation "hypothetical protein."; Pfam "[DJ-1_PfpI] DJ-1/PfpI family"; Scaffold002 rebuild exon 4605598 4605601 . - . gene_id "RvY_04956"; transcript_id "RvY_04956.1"; Scaffold002 rebuild exon 4605716 4606197 . - . gene_id "RvY_04956"; transcript_id "RvY_04956.1"; Scaffold002 rebuild transcript 4608507 4609142 . - . gene_id "RvY_04957"; transcript_id "RvY_04957.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4608507 4608998 . - . gene_id "RvY_04957"; transcript_id "RvY_04957.1"; Scaffold002 rebuild exon 4609140 4609142 . - . gene_id "RvY_04957"; transcript_id "RvY_04957.1"; Scaffold002 rebuild transcript 4609676 4610650 . - . gene_id "RvY_04958"; transcript_id "RvY_04958.1"; annotation "hypothetical protein."; Pfam "[DJ-1_PfpI] DJ-1/PfpI family"; Scaffold002 rebuild exon 4609676 4610007 . - . gene_id "RvY_04958"; transcript_id "RvY_04958.1"; Scaffold002 rebuild exon 4610194 4610650 . - . gene_id "RvY_04958"; transcript_id "RvY_04958.1"; Scaffold002 rebuild transcript 4613174 4615147 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; annotation "hypothetical protein."; Pfam "[CRF-BP] Corticotropin-releasing factor binding protein (CRF-BP)"; Scaffold002 rebuild exon 4613174 4613242 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild exon 4613442 4613520 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild exon 4613619 4613776 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild exon 4614119 4614326 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild exon 4614454 4614638 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild exon 4614800 4614908 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild exon 4615002 4615147 . + . gene_id "RvY_04959"; transcript_id "RvY_04959.1"; Scaffold002 rebuild transcript 4616134 4617959 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; gene_name "PRK06181"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.1.1.-"; KO "K15680"; similar_genes "DHI1L_DANRE(e-value:3.2e-16;bit-score:83.0)"; Scaffold002 rebuild exon 4616134 4616227 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; Scaffold002 rebuild exon 4616302 4616393 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; Scaffold002 rebuild exon 4616457 4616495 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; Scaffold002 rebuild exon 4616654 4616960 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; Scaffold002 rebuild exon 4617496 4617633 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; Scaffold002 rebuild exon 4617709 4617959 . + . gene_id "RvY_04960"; transcript_id "RvY_04960.1"; Scaffold002 rebuild transcript 4618304 4619437 . - . gene_id "RvY_04961"; transcript_id "RvY_04961.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4618304 4619437 . - . gene_id "RvY_04961"; transcript_id "RvY_04961.1"; Scaffold002 rebuild transcript 4621297 4622859 . - . gene_id "RvY_04962"; transcript_id "RvY_04962.1"; gene_name "PPP1R3"; annotation "protein phosphatase 1, regulatory (inhibitor) subunit 3"; Pfam "[CBM_21] Putative phosphatase regulatory subunit|[CBM_25] Carbohydrate binding domain (family 25)"; KO "K07189"; Scaffold002 rebuild exon 4621297 4621674 . - . gene_id "RvY_04962"; transcript_id "RvY_04962.1"; Scaffold002 rebuild exon 4622113 4622859 . - . gene_id "RvY_04962"; transcript_id "RvY_04962.1"; Scaffold002 rebuild transcript 4623923 4625981 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; gene_name "DHDH"; annotation "dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20 1.1.1.179]"; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold|[F420_oxidored] NADP oxidoreductase coenzyme F420-dependent"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; EC "EC1.1.1.179|EC1.3.1.20"; KO "K00078"; similar_genes "DHDH_MOUSE(e-value:3.8e-21;bit-score:99.0)"; Scaffold002 rebuild exon 4623923 4624020 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild exon 4624145 4624301 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild exon 4624722 4624846 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild exon 4624966 4625218 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild exon 4625339 4625502 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild exon 4625624 4625735 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild exon 4625868 4625981 . - . gene_id "RvY_04963"; transcript_id "RvY_04963.1"; Scaffold002 rebuild transcript 4626831 4629233 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; gene_name "SEC61A"; annotation "Protein transport protein Sec61 subunit alpha isoform B"; Pfam "[SecY] SecY translocase|[Plug_translocon] Plug domain of Sec61p"; CDD "Sec61 protein; Provisional"; KO "K10956"; similar_genes "S61A2_ONCMY(e-value:5.1e-250;bit-score:860.0)"; Scaffold002 rebuild exon 4626831 4626837 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4626924 4626991 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4627120 4627185 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4627287 4627365 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4627424 4627665 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4627799 4627952 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4628054 4628214 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4628313 4628510 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4628592 4628783 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4628845 4628992 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild exon 4629118 4629233 . + . gene_id "RvY_04964"; transcript_id "RvY_04964.1"; Scaffold002 rebuild transcript 4629763 4631829 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; gene_name "RUVBL1"; annotation "RuvB-like 1"; Pfam "[TIP49] TIP49 C-terminus|[AAA_22] AAA domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "DNA helicase TIP49, TBP-interacting protein [Transcription]"; EC "EC3.6.1.-"; KO "K04499"; similar_genes "RUVB1_HUMAN(e-value:5.3e-169;bit-score:590.0)"; Scaffold002 rebuild exon 4629763 4629922 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4630031 4630225 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4630313 4630575 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4630689 4630838 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4630924 4631081 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4631144 4631224 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4631313 4631445 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4631529 4631615 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild exon 4631689 4631829 . - . gene_id "RvY_04965"; transcript_id "RvY_04965.1"; Scaffold002 rebuild transcript 4632418 4633126 . + . gene_id "RvY_04966"; transcript_id "RvY_04966.1"; gene_name "RP-L40e"; annotation "putative Ubiquitin"; Pfam "[ubiquitin] Ubiquitin family|[Ribosomal_L40e] Ribosomal L40e family|[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)"; KO "K02927"; similar_genes "UBIQ_MACFA(e-value:6.4e-36;bit-score:148.0)"; Scaffold002 rebuild exon 4632418 4632520 . + . gene_id "RvY_04966"; transcript_id "RvY_04966.1"; Scaffold002 rebuild exon 4632646 4632732 . + . gene_id "RvY_04966"; transcript_id "RvY_04966.1"; Scaffold002 rebuild exon 4632828 4632930 . + . gene_id "RvY_04966"; transcript_id "RvY_04966.1"; Scaffold002 rebuild exon 4633033 4633126 . + . gene_id "RvY_04966"; transcript_id "RvY_04966.1"; Scaffold002 rebuild transcript 4633696 4636090 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; gene_name "VHS_Tom1"; annotation "hypothetical protein."; Pfam "[VHS]|[GAT]"; CDD "VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways."; similar_genes "TM1L2_XENLA(e-value:2.2e-23;bit-score:107.0)"; Scaffold002 rebuild exon 4633696 4633869 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4633939 4634117 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4634193 4634429 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4634506 4634584 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4634697 4634975 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4635167 4635301 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4635362 4635508 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4635642 4635729 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4635812 4635896 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild exon 4636000 4636090 . - . gene_id "RvY_04967"; transcript_id "RvY_04967.1"; Scaffold002 rebuild transcript 4638937 4645100 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; gene_name "GATA1_2_3"; annotation "Transcription factor GATA-3"; Pfam "[GATA] GATA zinc finger"; CDD "Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C"; KO "K09182"; similar_genes "GATA3_DANRE(e-value:2.5e-54;bit-score:210.0)"; Scaffold002 rebuild exon 4638937 4638992 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4639133 4639484 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4642437 4642562 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4642680 4642717 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4642842 4642949 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4643048 4643338 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4643626 4644168 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild exon 4644824 4645100 . - . gene_id "RvY_04968"; transcript_id "RvY_04968.1"; Scaffold002 rebuild transcript 4650185 4650298 . - . gene_id "RvY_04969"; transcript_id "RvY_04969.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4650185 4650298 . - . gene_id "RvY_04969"; transcript_id "RvY_04969.1"; Scaffold002 rebuild transcript 4651309 4651518 . + . gene_id "RvY_04970"; transcript_id "RvY_04970.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4651309 4651518 . + . gene_id "RvY_04970"; transcript_id "RvY_04970.1"; Scaffold002 rebuild transcript 4652020 4659816 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4652020 4652108 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4652190 4652351 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4652418 4652544 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4652607 4652776 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4652852 4653064 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4653122 4653330 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4653392 4653635 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4653709 4654033 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4654106 4654209 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4654298 4654618 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4655011 4655103 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4655190 4655266 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4655971 4656403 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild exon 4659753 4659816 . - . gene_id "RvY_04971"; transcript_id "RvY_04971.1"; Scaffold002 rebuild transcript 4661943 4664472 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; gene_name "LMBR1"; annotation "hypothetical protein."; Pfam "[LMBR1] LMBR1-like membrane protein"; CDD "LMBR1-like membrane protein. Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor"; similar_genes "LMBR1_CHICK(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 4661943 4662171 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4662259 4662331 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4662463 4662620 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4662713 4662864 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4662940 4663140 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4663223 4663287 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4663355 4663423 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4663486 4663615 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4663675 4663775 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4663860 4663999 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4664095 4664234 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild exon 4664389 4664472 . - . gene_id "RvY_04972"; transcript_id "RvY_04972.1"; Scaffold002 rebuild transcript 4662064 4662590 . + . gene_id "RvY_04973"; transcript_id "RvY_04973.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4662064 4662155 . + . gene_id "RvY_04973"; transcript_id "RvY_04973.1"; Scaffold002 rebuild exon 4662443 4662590 . + . gene_id "RvY_04973"; transcript_id "RvY_04973.1"; Scaffold002 rebuild transcript 4665712 4667339 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4665712 4665816 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; Scaffold002 rebuild exon 4665930 4666145 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; Scaffold002 rebuild exon 4666228 4666291 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; Scaffold002 rebuild exon 4666368 4666447 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; Scaffold002 rebuild exon 4666669 4666790 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; Scaffold002 rebuild exon 4667096 4667339 . + . gene_id "RvY_04974"; transcript_id "RvY_04974.1"; Scaffold002 rebuild transcript 4668636 4670673 . - . gene_id "RvY_04975"; transcript_id "RvY_04975.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 4668636 4668937 . - . gene_id "RvY_04975"; transcript_id "RvY_04975.1"; Scaffold002 rebuild exon 4669009 4670284 . - . gene_id "RvY_04975"; transcript_id "RvY_04975.1"; Scaffold002 rebuild exon 4670425 4670673 . - . gene_id "RvY_04975"; transcript_id "RvY_04975.1"; Scaffold002 rebuild transcript 4671852 4676257 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold002 rebuild exon 4671852 4672310 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild exon 4672434 4672470 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild exon 4672635 4672971 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild exon 4673062 4673100 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild exon 4673181 4673225 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild exon 4675639 4675739 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild exon 4675983 4676257 . - . gene_id "RvY_04976"; transcript_id "RvY_04976.1"; Scaffold002 rebuild transcript 4679266 4681337 . + . gene_id "RvY_04977"; transcript_id "RvY_04977.1"; annotation "Transmembrane 9 superfamily member 3"; Pfam "[EMP70] Endomembrane protein 70"; similar_genes "TM9S3_MOUSE(e-value:1.5e-128;bit-score:456.0)"; Scaffold002 rebuild exon 4679266 4679661 . + . gene_id "RvY_04977"; transcript_id "RvY_04977.1"; Scaffold002 rebuild exon 4679733 4680167 . + . gene_id "RvY_04977"; transcript_id "RvY_04977.1"; Scaffold002 rebuild exon 4680226 4680918 . + . gene_id "RvY_04977"; transcript_id "RvY_04977.1"; Scaffold002 rebuild exon 4681089 4681337 . + . gene_id "RvY_04977"; transcript_id "RvY_04977.1"; Scaffold002 rebuild transcript 4682853 4683666 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4682853 4682914 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.1"; Scaffold002 rebuild exon 4683007 4683133 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.1"; Scaffold002 rebuild exon 4683277 4683666 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.1"; Scaffold002 rebuild transcript 4682672 4683075 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4682672 4682914 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.2"; Scaffold002 rebuild exon 4683007 4683075 . + . gene_id "RvY_04978"; transcript_id "RvY_04978.2"; Scaffold002 rebuild transcript 4683776 4684439 . + . gene_id "RvY_04979"; transcript_id "RvY_04979.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4683776 4684091 . + . gene_id "RvY_04979"; transcript_id "RvY_04979.1"; Scaffold002 rebuild exon 4684384 4684439 . + . gene_id "RvY_04979"; transcript_id "RvY_04979.1"; Scaffold002 rebuild transcript 4685076 4688057 . - . gene_id "RvY_04980"; transcript_id "RvY_04980.1"; gene_name "STKc_MAPKKK"; annotation "putative Serine/threonine-protein kinase WNK2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[OSR1_C] Oxidative-stress-responsive kinase 1 C terminal"; CDD "Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15."; EC "EC2.7.11.1"; similar_genes "WNK2_MOUSE(e-value:4.9e-36;bit-score:149.0)"; Scaffold002 rebuild exon 4685076 4685466 . - . gene_id "RvY_04980"; transcript_id "RvY_04980.1"; Scaffold002 rebuild exon 4685532 4686562 . - . gene_id "RvY_04980"; transcript_id "RvY_04980.1"; Scaffold002 rebuild exon 4687039 4687644 . - . gene_id "RvY_04980"; transcript_id "RvY_04980.1"; Scaffold002 rebuild exon 4687914 4688057 . - . gene_id "RvY_04980"; transcript_id "RvY_04980.1"; Scaffold002 rebuild transcript 4691956 4692943 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.1"; annotation "hypothetical protein."; EC "EC2.7.11.1"; similar_genes "WNK4_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 4691956 4692008 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.1"; Scaffold002 rebuild exon 4692075 4692419 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.1"; Scaffold002 rebuild exon 4692568 4692943 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.1"; Scaffold002 rebuild transcript 4691956 4692943 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.2"; annotation "hypothetical protein."; EC "EC2.7.11.1"; similar_genes "WNK4_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold002 rebuild exon 4691956 4692008 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.2"; Scaffold002 rebuild exon 4692075 4692416 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.2"; Scaffold002 rebuild exon 4692568 4692943 . - . gene_id "RvY_04981"; transcript_id "RvY_04981.2"; Scaffold002 rebuild transcript 4694169 4695331 . + . gene_id "RvY_04982"; transcript_id "RvY_04982.1"; gene_name "CRK"; annotation "putative Adapter molecule Crk"; Pfam "[SH3_2] Variant SH3 domain|[SH2]|[SH3_1] SH3 domain"; CDD "Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae."; KO "K04438"; similar_genes "CRK_DROME(e-value:1.8e-50;bit-score:197.0)"; Scaffold002 rebuild exon 4694169 4694834 . + . gene_id "RvY_04982"; transcript_id "RvY_04982.1"; Scaffold002 rebuild exon 4695194 4695331 . + . gene_id "RvY_04982"; transcript_id "RvY_04982.1"; Scaffold002 rebuild transcript 4698093 4702172 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; gene_name "WNT5"; annotation "Protein Wnt-5b"; Pfam "[wnt] wnt family"; CDD "found in Wnt-1."; KO "K00444"; similar_genes "WNT5B_XENLA(e-value:2.2e-57;bit-score:220.0)"; Scaffold002 rebuild exon 4698093 4698202 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; Scaffold002 rebuild exon 4698400 4698671 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; Scaffold002 rebuild exon 4700824 4701116 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; Scaffold002 rebuild exon 4701569 4701839 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; Scaffold002 rebuild exon 4701899 4701987 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; Scaffold002 rebuild exon 4702074 4702172 . + . gene_id "RvY_04983"; transcript_id "RvY_04983.1"; Scaffold002 rebuild transcript 4707795 4719147 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; gene_name "(1,2)MYSc(3,4,5)MyTH4"; annotation "hypothetical protein."; Pfam "(1,2)[Myosin_head] Myosin head (motor domain)|[SH3_2] Variant SH3 domain|[MyTH4]|[FERM_M] FERM central domain|(1,2)[IQ] IQ calmodulin-binding motif"; CDD "(1,2)Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.(3,4,5)Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins."; similar_genes "MYO15_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4707795 4708043 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4708207 4708364 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4708797 4708967 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4709115 4709450 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4709878 4709935 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4710010 4710163 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4710258 4710397 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4710514 4710612 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4710691 4710765 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4710833 4711011 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4711092 4711328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4711422 4712049 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4712140 4712346 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4712434 4712566 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4713321 4713376 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4713453 4713962 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4714038 4714469 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4714531 4714666 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4714732 4714859 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4714944 4715189 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4715278 4715328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4715438 4715573 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4716172 4716272 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4716341 4716379 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4716467 4716719 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4716794 4716843 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4716925 4716997 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4717075 4717234 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4717309 4717534 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4717609 4717686 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4717755 4717851 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4717952 4718124 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4718354 4718487 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4718565 4718754 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild exon 4718821 4719147 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.1"; Scaffold002 rebuild transcript 4707795 4719147 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; gene_name "(1,2)MYSc(3,4,5)MyTH4"; annotation "hypothetical protein."; Pfam "(1,2)[Myosin_head] Myosin head (motor domain)|[SH3_2] Variant SH3 domain|[MyTH4]|[FERM_M] FERM central domain|(1,2)[IQ] IQ calmodulin-binding motif"; CDD "(1,2)Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.(3,4,5)Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins."; similar_genes "MYO15_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4707795 4708043 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4708207 4708364 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4708797 4708967 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4709115 4709450 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4709878 4709935 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4710010 4710163 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4710258 4710397 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4710514 4710612 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4710691 4710765 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4710833 4711011 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4711092 4711328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4711422 4712049 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4712140 4712346 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4712434 4712566 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4713324 4713376 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4713453 4713962 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4714038 4714469 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4714531 4714666 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4714732 4714859 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4714944 4715189 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4715278 4715328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4715438 4715573 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4716172 4716272 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4716341 4716379 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4716467 4716719 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4716794 4716843 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4716925 4716997 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4717075 4717234 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4717309 4717534 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4717609 4717686 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4717755 4717851 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4717952 4718124 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4718354 4718487 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4718565 4718754 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild exon 4718821 4719147 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.2"; Scaffold002 rebuild transcript 4711192 4719282 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; gene_name "(1,2)MYSc(3,4,5)MyTH4"; annotation "hypothetical protein."; Pfam "(1,2)[Myosin_head] Myosin head (motor domain)|[SH3_2] Variant SH3 domain|[MyTH4]|[FERM_M] FERM central domain|(1,2)[IQ] IQ calmodulin-binding motif"; CDD "(1,2)Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.(3,4,5)Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins."; similar_genes "MYO15_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4711192 4711328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4711422 4712049 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4712140 4712346 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4712434 4712566 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4712688 4713002 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4713321 4713376 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4713453 4713962 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4714038 4714469 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4714531 4714666 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4714732 4714859 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4714944 4715189 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4715278 4715328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4715438 4715573 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4716172 4716272 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4716341 4716379 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4716467 4716719 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4716794 4716843 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4716925 4716997 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4717075 4717234 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4717309 4717534 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4717609 4717686 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4717755 4717851 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4717952 4718124 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4718354 4718487 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4718565 4718754 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4718821 4719105 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild exon 4719172 4719282 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.3"; Scaffold002 rebuild transcript 4711192 4719282 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; gene_name "(1,2)MYSc(3,4,5)MyTH4"; annotation "hypothetical protein."; Pfam "(1,2)[Myosin_head] Myosin head (motor domain)|[SH3_2] Variant SH3 domain|[MyTH4]|[FERM_M] FERM central domain|(1,2)[IQ] IQ calmodulin-binding motif"; CDD "(1,2)Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.(3,4,5)Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins."; similar_genes "MYO15_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4711192 4711328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4711422 4712049 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4712140 4712346 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4712434 4712566 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4713321 4713376 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4713453 4713962 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4714038 4714469 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4714531 4714666 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4714732 4714859 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4714944 4715189 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4715278 4715328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4715438 4715573 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4716172 4716272 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4716341 4716379 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4716467 4716719 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4716794 4716843 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4716925 4716997 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4717075 4717234 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4717309 4717534 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4717609 4717686 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4717755 4717851 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4717952 4718124 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4718354 4718487 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4718565 4718754 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4718821 4719105 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild exon 4719172 4719282 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.4"; Scaffold002 rebuild transcript 4711192 4719282 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; gene_name "(1,2)MYSc(3,4,5)MyTH4"; annotation "hypothetical protein."; Pfam "(1,2)[Myosin_head] Myosin head (motor domain)|[SH3_2] Variant SH3 domain|[MyTH4]|[FERM_M] FERM central domain|(1,2)[IQ] IQ calmodulin-binding motif"; CDD "(1,2)Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.(3,4,5)Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins."; similar_genes "MYO15_HUMAN(e-value:6.2e-15;bit-score:79.0)"; Scaffold002 rebuild exon 4711192 4711328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4711422 4712049 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4712140 4712346 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4712434 4712566 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4713324 4713376 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4713453 4713962 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4714038 4714469 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4714531 4714666 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4714732 4714859 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4714944 4715189 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4715278 4715328 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4715438 4715573 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4716172 4716272 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4716341 4716379 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4716467 4716719 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4716794 4716843 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4716925 4716997 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4717075 4717234 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4717309 4717534 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4717609 4717686 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4717755 4717851 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4717952 4718124 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4718354 4718487 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4718565 4718754 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4718821 4719105 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild exon 4719172 4719282 . + . gene_id "RvY_04984"; transcript_id "RvY_04984.5"; Scaffold002 rebuild transcript 4719477 4720220 . - . gene_id "RvY_04985"; transcript_id "RvY_04985.1"; gene_name "K07059"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[zf-AN1] AN1-like Zinc finger"; KO "K07059"; Scaffold002 rebuild exon 4719477 4720220 . - . gene_id "RvY_04985"; transcript_id "RvY_04985.1"; Scaffold002 rebuild transcript 4721214 4721872 . + . gene_id "RvY_04986"; transcript_id "RvY_04986.1"; gene_name "amidohydrolases"; annotation "hypothetical protein."; CDD "amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the Scaffold002 rebuild exon 4721214 4721283 . + . gene_id "RvY_04986"; transcript_id "RvY_04986.1"; Scaffold002 rebuild exon 4721294 4721519 . + . gene_id "RvY_04986"; transcript_id "RvY_04986.1"; Scaffold002 rebuild exon 4721582 4721703 . + . gene_id "RvY_04986"; transcript_id "RvY_04986.1"; Scaffold002 rebuild exon 4721766 4721872 . + . gene_id "RvY_04986"; transcript_id "RvY_04986.1"; Scaffold002 rebuild transcript 4722187 4726362 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; gene_name "pckA"; annotation "Phosphoenolpyruvate carboxykinase, cytosolic [GTP]"; Pfam "[PEPCK] Phosphoenolpyruvate carboxykinase"; EC "EC4.1.1.32"; KO "K01596"; similar_genes "PCKGC_PONAB(e-value:1.5e-111;bit-score:400.0)"; Scaffold002 rebuild exon 4722187 4722392 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4722623 4722825 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4722932 4723073 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4723134 4723348 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4723416 4723509 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4723583 4723653 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4723784 4723890 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4724017 4724052 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4724136 4724323 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4724394 4724489 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4725216 4725323 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4725403 4725587 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4725660 4725856 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4725926 4726013 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild exon 4726289 4726362 . - . gene_id "RvY_04987"; transcript_id "RvY_04987.1"; Scaffold002 rebuild transcript 4727039 4727515 . - . gene_id "RvY_04988"; transcript_id "RvY_04988.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4727039 4727515 . - . gene_id "RvY_04988"; transcript_id "RvY_04988.1"; Scaffold002 rebuild transcript 4726759 4727181 . - . gene_id "RvY_04988"; transcript_id "RvY_04988.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4726759 4727181 . - . gene_id "RvY_04988"; transcript_id "RvY_04988.2"; Scaffold002 rebuild transcript 4727764 4727955 . - . gene_id "RvY_04989"; transcript_id "RvY_04989.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4727764 4727955 . - . gene_id "RvY_04989"; transcript_id "RvY_04989.1"; Scaffold002 rebuild transcript 4728306 4730273 . + . gene_id "RvY_04990"; transcript_id "RvY_04990.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4728306 4728326 . + . gene_id "RvY_04990"; transcript_id "RvY_04990.1"; Scaffold002 rebuild exon 4728706 4728852 . + . gene_id "RvY_04990"; transcript_id "RvY_04990.1"; Scaffold002 rebuild exon 4729305 4729493 . + . gene_id "RvY_04990"; transcript_id "RvY_04990.1"; Scaffold002 rebuild exon 4729605 4730273 . + . gene_id "RvY_04990"; transcript_id "RvY_04990.1"; Scaffold002 rebuild transcript 4730927 4732577 . - . gene_id "RvY_04991"; transcript_id "RvY_04991.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4730927 4731145 . - . gene_id "RvY_04991"; transcript_id "RvY_04991.1"; Scaffold002 rebuild exon 4732503 4732577 . - . gene_id "RvY_04991"; transcript_id "RvY_04991.1"; Scaffold002 rebuild transcript 4734485 4735354 . + . gene_id "RvY_04992"; transcript_id "RvY_04992.1"; gene_name "K00902"; annotation "dolichol kinase [EC:2.7.1.108]"; Pfam "[CTP_transf_1] Cytidylyltransferase family"; CDD "Dolichol kinase [Lipid metabolism]"; EC "EC2.7.1.108"; KO "K00902"; Scaffold002 rebuild exon 4734485 4734739 . + . gene_id "RvY_04992"; transcript_id "RvY_04992.1"; Scaffold002 rebuild exon 4734797 4735354 . + . gene_id "RvY_04992"; transcript_id "RvY_04992.1"; Scaffold002 rebuild transcript 4735433 4739832 . - . gene_id "RvY_04993"; transcript_id "RvY_04993.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4735433 4738607 . - . gene_id "RvY_04993"; transcript_id "RvY_04993.1"; Scaffold002 rebuild exon 4738722 4738850 . - . gene_id "RvY_04993"; transcript_id "RvY_04993.1"; Scaffold002 rebuild exon 4739468 4739578 . - . gene_id "RvY_04993"; transcript_id "RvY_04993.1"; Scaffold002 rebuild exon 4739690 4739832 . - . gene_id "RvY_04993"; transcript_id "RvY_04993.1"; Scaffold002 rebuild transcript 4741881 4746973 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; gene_name "RPB2"; annotation "DNA-directed RNA polymerase II subunit RPB2"; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|[RNA_pol_Rpb2_4] RNA polymerase Rpb2, domain 4|[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "DNA-directed RNA polymerase subunit beta; Provisional"; EC "EC2.7.7.6"; KO "K03010"; similar_genes "RPB2_HUMAN(e-value:2.1e-259;bit-score:891.0)"; Scaffold002 rebuild exon 4741881 4741893 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4742002 4742267 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4742334 4742672 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4742922 4743080 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4743145 4743492 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4743618 4743938 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4744001 4744284 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4744343 4744615 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4744779 4745161 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4745383 4745699 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4745772 4745987 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4746061 4746168 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4746255 4746529 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4746611 4746806 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild exon 4746884 4746973 . + . gene_id "RvY_04994"; transcript_id "RvY_04994.1"; Scaffold002 rebuild transcript 4747035 4747340 . + . gene_id "RvY_04995"; transcript_id "RvY_04995.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4747035 4747340 . + . gene_id "RvY_04995"; transcript_id "RvY_04995.1"; Scaffold002 rebuild transcript 4747723 4751271 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; gene_name "MLL5"; annotation "myeloid/lymphoid or mixed-lineage leukemia protein 5"; Pfam "[PHD] PHD-finger"; KO "K09189"; Scaffold002 rebuild exon 4747723 4748154 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4748269 4748316 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4748377 4748861 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4749078 4749475 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4749540 4750194 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4750270 4750513 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4750576 4750943 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild exon 4751139 4751271 . - . gene_id "RvY_04996"; transcript_id "RvY_04996.1"; Scaffold002 rebuild transcript 4752311 4752661 . + . gene_id "RvY_04997"; transcript_id "RvY_04997.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4752311 4752661 . + . gene_id "RvY_04997"; transcript_id "RvY_04997.1"; Scaffold002 rebuild transcript 4754467 4755261 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.1"; annotation "hypothetical protein."; Pfam "[PRA1] PRA1 family protein"; similar_genes "(2)PRAF2_HUMAN(e-value:7.6e-07;bit-score:52.0)"; Scaffold002 rebuild exon 4754467 4754909 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.1"; Scaffold002 rebuild exon 4754965 4755194 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.1"; Scaffold002 rebuild exon 4755254 4755261 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.1"; Scaffold002 rebuild transcript 4754992 4755710 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.2"; annotation "hypothetical protein."; Pfam "[PRA1] PRA1 family protein"; similar_genes "(2)PRAF2_HUMAN(e-value:7.6e-07;bit-score:52.0)"; Scaffold002 rebuild exon 4754992 4755194 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.2"; Scaffold002 rebuild exon 4755254 4755471 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.2"; Scaffold002 rebuild exon 4755544 4755710 . + . gene_id "RvY_04998"; transcript_id "RvY_04998.2"; Scaffold002 rebuild transcript 4757811 4764842 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; gene_name "LAMB1"; annotation "Laminin subunit beta-2"; Pfam "[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Laminin_N] Laminin N-terminal (Domain VI)"; KO "K05636"; similar_genes "LAMB2_MOUSE(e-value:8.4e-106;bit-score:381.0)"; Scaffold002 rebuild exon 4757811 4758162 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4758357 4758619 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4758677 4758940 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4759124 4759244 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4759339 4759527 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4759613 4759792 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4759861 4760186 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4760327 4760737 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4760805 4760991 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4761063 4761656 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4761840 4762307 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4762370 4762561 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4762630 4762810 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4762895 4763079 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4763154 4763389 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4763452 4763634 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4763717 4764069 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4764162 4764480 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild exon 4764543 4764842 . + . gene_id "RvY_04999"; transcript_id "RvY_04999.1"; Scaffold002 rebuild transcript 4765581 4766996 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4765581 4765612 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; Scaffold002 rebuild exon 4765687 4765854 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; Scaffold002 rebuild exon 4765929 4766338 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; Scaffold002 rebuild exon 4766439 4766542 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; Scaffold002 rebuild exon 4766616 4766778 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; Scaffold002 rebuild exon 4766917 4766996 . - . gene_id "RvY_05000"; transcript_id "RvY_05000.1"; Scaffold002 rebuild transcript 4767588 4768079 . - . gene_id "RvY_05001"; transcript_id "RvY_05001.1"; gene_name "UFC1"; annotation "Ubiquitin-fold modifier-conjugating enzyme 1"; Pfam "[UFC1] Ubiquitin-fold modifier-conjugating enzyme 1"; KO "K12165"; similar_genes "UFC1_BOVIN(e-value:1.3e-76;bit-score:284.0)"; Scaffold002 rebuild exon 4767588 4768079 . - . gene_id "RvY_05001"; transcript_id "RvY_05001.1"; Scaffold002 rebuild transcript 4768531 4769476 . + . gene_id "RvY_05002"; transcript_id "RvY_05002.1"; gene_name "K07025"; annotation "putative hydrolase of the HAD superfamily"; Pfam "[HAD_2] Haloacid dehalogenase-like hydrolase|[Hydrolase_like] HAD-hyrolase-like"; CDD "REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes."; KO "K07025"; Scaffold002 rebuild exon 4768531 4768851 . + . gene_id "RvY_05002"; transcript_id "RvY_05002.1"; Scaffold002 rebuild exon 4768935 4769135 . + . gene_id "RvY_05002"; transcript_id "RvY_05002.1"; Scaffold002 rebuild exon 4769237 4769476 . + . gene_id "RvY_05002"; transcript_id "RvY_05002.1"; Scaffold002 rebuild transcript 4771541 4772693 . + . gene_id "RvY_05003"; transcript_id "RvY_05003.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4771541 4771887 . + . gene_id "RvY_05003"; transcript_id "RvY_05003.1"; Scaffold002 rebuild exon 4772001 4772346 . + . gene_id "RvY_05003"; transcript_id "RvY_05003.1"; Scaffold002 rebuild exon 4772403 4772693 . + . gene_id "RvY_05003"; transcript_id "RvY_05003.1"; Scaffold002 rebuild transcript 4772921 4779713 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold002 rebuild exon 4772921 4773031 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4773098 4773244 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4773305 4773718 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4773787 4774053 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4774120 4774300 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4774368 4774557 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4774622 4775255 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4775328 4775668 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4775753 4775822 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4775896 4776228 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild exon 4779372 4779713 . - . gene_id "RvY_05004"; transcript_id "RvY_05004.1"; Scaffold002 rebuild transcript 4782725 4783771 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.1"; gene_name "(2)tetraspanin_LEL"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; CDD "(2)Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the ""tetraspanin web"", which may also include integrins."; Scaffold002 rebuild exon 4782725 4782801 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.1"; Scaffold002 rebuild exon 4782882 4783236 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.1"; Scaffold002 rebuild exon 4783294 4783464 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.1"; Scaffold002 rebuild exon 4783523 4783771 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.1"; Scaffold002 rebuild transcript 4782877 4783771 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.2"; gene_name "(2)tetraspanin_LEL"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; CDD "(2)Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the ""tetraspanin web"", which may also include integrins."; Scaffold002 rebuild exon 4782877 4783236 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.2"; Scaffold002 rebuild exon 4783294 4783464 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.2"; Scaffold002 rebuild exon 4783523 4783771 . - . gene_id "RvY_05005"; transcript_id "RvY_05005.2"; Scaffold002 rebuild transcript 4784377 4789962 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; annotation "hypothetical protein."; Pfam "[Med1] Mediator of RNA polymerase II transcription subunit 1"; KO "K15144"; Scaffold002 rebuild exon 4784377 4784798 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4784986 4785678 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4785864 4786362 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4786471 4786901 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4787052 4787323 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4787398 4787497 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4787577 4787672 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4787763 4787940 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4788057 4788166 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4788263 4788508 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4788572 4788655 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4788831 4788898 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4788959 4789036 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4789118 4789189 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4789304 4789332 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4789410 4789439 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4789542 4789659 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4789749 4789800 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild exon 4789866 4789962 . - . gene_id "RvY_05006"; transcript_id "RvY_05006.1"; Scaffold002 rebuild transcript 4792905 4793087 . - . gene_id "RvY_05007"; transcript_id "RvY_05007.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4792905 4793087 . - . gene_id "RvY_05007"; transcript_id "RvY_05007.1"; Scaffold002 rebuild transcript 4793467 4794035 . + . gene_id "RvY_05008"; transcript_id "RvY_05008.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4793467 4793835 . + . gene_id "RvY_05008"; transcript_id "RvY_05008.1"; Scaffold002 rebuild exon 4794021 4794035 . + . gene_id "RvY_05008"; transcript_id "RvY_05008.1"; Scaffold002 rebuild transcript 4795336 4796427 . + . gene_id "RvY_05009"; transcript_id "RvY_05009.1"; gene_name "(1)PRPF38A"; annotation "Pre-mRNA-splicing factor 38A"; Pfam "[PRP38] PRP38 family"; KO "(1)K12849"; similar_genes "(1)PR38A_XENTR(e-value:1.1e-73;bit-score:274.0)(2)PR38A_XENTR(e-value:4.5e-60;bit-score:229.0)"; Scaffold002 rebuild exon 4795336 4795802 . + . gene_id "RvY_05009"; transcript_id "RvY_05009.1"; Scaffold002 rebuild exon 4795977 4796427 . + . gene_id "RvY_05009"; transcript_id "RvY_05009.1"; Scaffold002 rebuild transcript 4795336 4795806 . + . gene_id "RvY_05009"; transcript_id "RvY_05009.2"; gene_name "(1)PRPF38A"; annotation "Pre-mRNA-splicing factor 38A"; Pfam "[PRP38] PRP38 family"; KO "(1)K12849"; similar_genes "(1)PR38A_XENTR(e-value:1.1e-73;bit-score:274.0)(2)PR38A_XENTR(e-value:4.5e-60;bit-score:229.0)"; Scaffold002 rebuild exon 4795336 4795806 . + . gene_id "RvY_05009"; transcript_id "RvY_05009.2"; Scaffold002 rebuild transcript 4797061 4799543 . + . gene_id "RvY_05010"; transcript_id "RvY_05010.1"; gene_name "MTH"; annotation "G protein-coupled receptor Mth (Methuselah protein)"; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)"; KO "K04599"; Scaffold002 rebuild exon 4797061 4798445 . + . gene_id "RvY_05010"; transcript_id "RvY_05010.1"; Scaffold002 rebuild exon 4798523 4799543 . + . gene_id "RvY_05010"; transcript_id "RvY_05010.1"; Scaffold002 rebuild transcript 4800214 4801226 . + . gene_id "RvY_05011"; transcript_id "RvY_05011.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4800214 4800412 . + . gene_id "RvY_05011"; transcript_id "RvY_05011.1"; Scaffold002 rebuild exon 4800616 4801226 . + . gene_id "RvY_05011"; transcript_id "RvY_05011.1"; Scaffold002 rebuild transcript 4801398 4802768 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; annotation "hypothetical protein."; Pfam "[Alba]"; KO "K14525"; Scaffold002 rebuild exon 4801398 4801410 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; Scaffold002 rebuild exon 4801489 4801563 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; Scaffold002 rebuild exon 4801654 4801695 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; Scaffold002 rebuild exon 4801789 4801823 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; Scaffold002 rebuild exon 4801946 4802044 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; Scaffold002 rebuild exon 4802133 4802768 . - . gene_id "RvY_05012"; transcript_id "RvY_05012.1"; Scaffold002 rebuild transcript 4802757 4802999 . + . gene_id "RvY_05013"; transcript_id "RvY_05013.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4802757 4802999 . + . gene_id "RvY_05013"; transcript_id "RvY_05013.1"; Scaffold002 rebuild transcript 4803011 4803244 . - . gene_id "RvY_05014"; transcript_id "RvY_05014.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4803011 4803025 . - . gene_id "RvY_05014"; transcript_id "RvY_05014.1"; Scaffold002 rebuild exon 4803152 4803244 . - . gene_id "RvY_05014"; transcript_id "RvY_05014.1"; Scaffold002 rebuild transcript 4804129 4804518 . - . gene_id "RvY_05015"; transcript_id "RvY_05015.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4804129 4804518 . - . gene_id "RvY_05015"; transcript_id "RvY_05015.1"; Scaffold002 rebuild transcript 4804977 4807242 . - . gene_id "RvY_05016"; transcript_id "RvY_05016.1"; gene_name "TTL"; annotation "hypothetical protein."; Pfam "[TTL] Tubulin-tyrosine ligase family"; CDD "Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis."; EC "EC6.3.2.-"; similar_genes "TTL3A_DROME(e-value:1.8e-12;bit-score:70.0)"; Scaffold002 rebuild exon 4804977 4805645 . - . gene_id "RvY_05016"; transcript_id "RvY_05016.1"; Scaffold002 rebuild exon 4805704 4806512 . - . gene_id "RvY_05016"; transcript_id "RvY_05016.1"; Scaffold002 rebuild exon 4806566 4806716 . - . gene_id "RvY_05016"; transcript_id "RvY_05016.1"; Scaffold002 rebuild exon 4806782 4807152 . - . gene_id "RvY_05016"; transcript_id "RvY_05016.1"; Scaffold002 rebuild exon 4807212 4807242 . - . gene_id "RvY_05016"; transcript_id "RvY_05016.1"; Scaffold002 rebuild transcript 4812392 4816435 . - . gene_id "RvY_05017"; transcript_id "RvY_05017.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4812392 4812708 . - . gene_id "RvY_05017"; transcript_id "RvY_05017.1"; Scaffold002 rebuild exon 4815959 4816108 . - . gene_id "RvY_05017"; transcript_id "RvY_05017.1"; Scaffold002 rebuild exon 4816261 4816435 . - . gene_id "RvY_05017"; transcript_id "RvY_05017.1"; Scaffold002 rebuild transcript 4812636 4816190 . + . gene_id "RvY_05018"; transcript_id "RvY_05018.1"; gene_name "HRH1"; annotation "histamine receptor H1"; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04149"; similar_genes "5HT1B_VULVU(e-value:4.9e-19;bit-score:92.0)"; Scaffold002 rebuild exon 4812636 4812845 . + . gene_id "RvY_05018"; transcript_id "RvY_05018.1"; Scaffold002 rebuild exon 4813176 4813358 . + . gene_id "RvY_05018"; transcript_id "RvY_05018.1"; Scaffold002 rebuild exon 4814671 4814932 . + . gene_id "RvY_05018"; transcript_id "RvY_05018.1"; Scaffold002 rebuild exon 4815011 4815872 . + . gene_id "RvY_05018"; transcript_id "RvY_05018.1"; Scaffold002 rebuild exon 4815932 4816190 . + . gene_id "RvY_05018"; transcript_id "RvY_05018.1"; Scaffold002 rebuild transcript 4817183 4818259 . - . gene_id "RvY_05019"; transcript_id "RvY_05019.1"; annotation "Vacuolar protein sorting-associated protein 26B"; Pfam "[Vps26] Vacuolar protein sorting-associated protein 26"; similar_genes "VP26B_DANRE(e-value:7.9e-134;bit-score:474.0)"; Scaffold002 rebuild exon 4817183 4817705 . - . gene_id "RvY_05019"; transcript_id "RvY_05019.1"; Scaffold002 rebuild exon 4817778 4818259 . - . gene_id "RvY_05019"; transcript_id "RvY_05019.1"; Scaffold002 rebuild transcript 4818990 4825553 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; gene_name "2A060602"; annotation "hypothetical protein."; Pfam "[Patched] Patched family|[MMPL] MMPL family"; CDD "The Eukaryotic (Putative) Sterol Transporter (EST) Family."; similar_genes "DISP1_MOUSE(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 4818990 4819039 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4820860 4820983 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4821131 4821404 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4821705 4822484 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4822556 4822632 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4822860 4823607 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4823834 4824489 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4824704 4825121 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild exon 4825228 4825553 . + . gene_id "RvY_05020"; transcript_id "RvY_05020.1"; Scaffold002 rebuild transcript 4825960 4828246 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; gene_name "MACPF"; annotation "hypothetical protein."; Pfam "[MACPF] MAC/Perforin domain"; CDD "membrane-attack complex / perforin."; Scaffold002 rebuild exon 4825960 4826073 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; Scaffold002 rebuild exon 4826139 4826226 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; Scaffold002 rebuild exon 4826333 4826514 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; Scaffold002 rebuild exon 4826580 4827120 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; Scaffold002 rebuild exon 4827348 4827536 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; Scaffold002 rebuild exon 4827657 4828246 . + . gene_id "RvY_05021"; transcript_id "RvY_05021.1"; Scaffold002 rebuild transcript 4828480 4829238 . - . gene_id "RvY_05022"; transcript_id "RvY_05022.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4828480 4829238 . - . gene_id "RvY_05022"; transcript_id "RvY_05022.1"; Scaffold002 rebuild transcript 4835513 4837347 . - . gene_id "RvY_05023"; transcript_id "RvY_05023.1"; product "HOX7 antennapedia/ftz"; gene_name "HOX_7"; annotation "HOX7 antennapedia/ftz | homeobox protein HoxA/B7"; Pfam "[Homeobox]"; KO "K09307"; similar_genes "HMB1_TRIGR(e-value:4.4e-24;bit-score:109.0)"; Scaffold002 rebuild exon 4835513 4835654 . - . gene_id "RvY_05023"; transcript_id "RvY_05023.1"; Scaffold002 rebuild exon 4835947 4836040 . - . gene_id "RvY_05023"; transcript_id "RvY_05023.1"; Scaffold002 rebuild exon 4836138 4836200 . - . gene_id "RvY_05023"; transcript_id "RvY_05023.1"; Scaffold002 rebuild exon 4836765 4837347 . - . gene_id "RvY_05023"; transcript_id "RvY_05023.1"; Scaffold002 rebuild transcript 4837695 4838601 . + . gene_id "RvY_05024"; transcript_id "RvY_05024.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4837695 4837732 . + . gene_id "RvY_05024"; transcript_id "RvY_05024.1"; Scaffold002 rebuild exon 4838517 4838601 . + . gene_id "RvY_05024"; transcript_id "RvY_05024.1"; Scaffold002 rebuild transcript 4839696 4840076 . + . gene_id "RvY_05025"; transcript_id "RvY_05025.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4839696 4840076 . + . gene_id "RvY_05025"; transcript_id "RvY_05025.1"; Scaffold002 rebuild transcript 4842333 4842536 . + . gene_id "RvY_05026"; transcript_id "RvY_05026.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4842333 4842536 . + . gene_id "RvY_05026"; transcript_id "RvY_05026.1"; Scaffold002 rebuild transcript 4843284 4845831 . - . gene_id "RvY_05027"; transcript_id "RvY_05027.1"; annotation "putative Protein FAM116A"; Pfam "[Avl9] Transport protein Avl9|[SPA] Stabilisation of polarity axis|[Afi1] Docking domain of Afi1 for Arf3 in vesicle trafficking"; similar_genes "F116A_CHICK(e-value:5.7e-39;bit-score:159.0)"; Scaffold002 rebuild exon 4843284 4843493 . - . gene_id "RvY_05027"; transcript_id "RvY_05027.1"; Scaffold002 rebuild exon 4843668 4844147 . - . gene_id "RvY_05027"; transcript_id "RvY_05027.1"; Scaffold002 rebuild exon 4844420 4845035 . - . gene_id "RvY_05027"; transcript_id "RvY_05027.1"; Scaffold002 rebuild exon 4845219 4845517 . - . gene_id "RvY_05027"; transcript_id "RvY_05027.1"; Scaffold002 rebuild exon 4845670 4845831 . - . gene_id "RvY_05027"; transcript_id "RvY_05027.1"; Scaffold002 rebuild transcript 4846739 4848261 . + . gene_id "RvY_05028"; transcript_id "RvY_05028.1"; gene_name "WD40"; annotation "putative U3 small nucleolar RNA-interacting protein 2"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14793"; similar_genes "U3IP2_HUMAN(e-value:4.5e-43;bit-score:172.0)"; Scaffold002 rebuild exon 4846739 4847179 . + . gene_id "RvY_05028"; transcript_id "RvY_05028.1"; Scaffold002 rebuild exon 4847251 4848261 . + . gene_id "RvY_05028"; transcript_id "RvY_05028.1"; Scaffold002 rebuild transcript 4848456 4849248 . - . gene_id "RvY_05029"; transcript_id "RvY_05029.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4848456 4848871 . - . gene_id "RvY_05029"; transcript_id "RvY_05029.1"; Scaffold002 rebuild exon 4848962 4849004 . - . gene_id "RvY_05029"; transcript_id "RvY_05029.1"; Scaffold002 rebuild exon 4849075 4849248 . - . gene_id "RvY_05029"; transcript_id "RvY_05029.1"; Scaffold002 rebuild transcript 4849671 4851011 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; gene_name "PQBP1"; annotation "polyglutamine-binding protein 1"; Pfam "[WW]"; KO "K12865"; similar_genes "PQBP1_GORGO(e-value:4.0e-12;bit-score:69.0)"; Scaffold002 rebuild exon 4849671 4849761 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; Scaffold002 rebuild exon 4849856 4850135 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; Scaffold002 rebuild exon 4850216 4850396 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; Scaffold002 rebuild exon 4850472 4850718 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; Scaffold002 rebuild exon 4850832 4850860 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; Scaffold002 rebuild exon 4850940 4851011 . + . gene_id "RvY_05030"; transcript_id "RvY_05030.1"; Scaffold002 rebuild transcript 4851363 4853369 . - . gene_id "RvY_05031"; transcript_id "RvY_05031.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.12.1"; similar_genes "DOA_DROME(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 4851363 4851521 . - . gene_id "RvY_05031"; transcript_id "RvY_05031.1"; Scaffold002 rebuild exon 4851643 4851804 . - . gene_id "RvY_05031"; transcript_id "RvY_05031.1"; Scaffold002 rebuild exon 4851974 4852077 . - . gene_id "RvY_05031"; transcript_id "RvY_05031.1"; Scaffold002 rebuild exon 4852171 4852740 . - . gene_id "RvY_05031"; transcript_id "RvY_05031.1"; Scaffold002 rebuild exon 4852934 4853369 . - . gene_id "RvY_05031"; transcript_id "RvY_05031.1"; Scaffold002 rebuild transcript 4854328 4862494 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; product "sarcolemmal membrane-associated protein"; gene_name "FHA"; annotation "sarcolemmal membrane-associated protein | hypothetical protein."; Pfam "[FHA]"; CDD "Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation)."; Scaffold002 rebuild exon 4854328 4854707 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4854771 4854911 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4854975 4855322 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4855385 4855448 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4855539 4855649 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4855732 4855957 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4861308 4861681 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4861760 4861947 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4862024 4862237 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild exon 4862309 4862494 . - . gene_id "RvY_05032"; transcript_id "RvY_05032.1"; Scaffold002 rebuild transcript 4862615 4863281 . - . gene_id "RvY_05033"; transcript_id "RvY_05033.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4862615 4862666 . - . gene_id "RvY_05033"; transcript_id "RvY_05033.1"; Scaffold002 rebuild exon 4862980 4863281 . - . gene_id "RvY_05033"; transcript_id "RvY_05033.1"; Scaffold002 rebuild transcript 4863057 4863353 . + . gene_id "RvY_05034"; transcript_id "RvY_05034.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4863057 4863353 . + . gene_id "RvY_05034"; transcript_id "RvY_05034.1"; Scaffold002 rebuild transcript 4863803 4865441 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; gene_name "(1,2,3)CHMP6"; annotation "(1,2,3)charged multivesicular body protein 6(4)hypothetical protein."; Pfam "[Snf7]"; KO "(1,2,3)K12195"; Scaffold002 rebuild exon 4863803 4863868 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild exon 4863942 4864051 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild exon 4864125 4864212 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild exon 4864315 4864401 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild exon 4864511 4864576 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild exon 4865137 4865217 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild exon 4865301 4865441 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.1"; Scaffold002 rebuild transcript 4863803 4865504 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; gene_name "(1,2,3)CHMP6"; annotation "(1,2,3)charged multivesicular body protein 6(4)hypothetical protein."; Pfam "[Snf7]"; KO "(1,2,3)K12195"; Scaffold002 rebuild exon 4863803 4863868 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4863942 4864051 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4864125 4864212 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4864315 4864401 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4864511 4864576 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4865137 4865217 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4865301 4865382 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild exon 4865449 4865504 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.2"; Scaffold002 rebuild transcript 4863803 4865283 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; gene_name "(1,2,3)CHMP6"; annotation "(1,2,3)charged multivesicular body protein 6(4)hypothetical protein."; Pfam "[Snf7]"; KO "(1,2,3)K12195"; Scaffold002 rebuild exon 4863803 4863868 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; Scaffold002 rebuild exon 4863942 4864051 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; Scaffold002 rebuild exon 4864125 4864212 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; Scaffold002 rebuild exon 4864315 4864401 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; Scaffold002 rebuild exon 4864511 4864576 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; Scaffold002 rebuild exon 4865137 4865283 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.3"; Scaffold002 rebuild transcript 4865177 4865709 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.4"; gene_name "(1,2,3)CHMP6"; annotation "(1,2,3)charged multivesicular body protein 6(4)hypothetical protein."; Pfam "[Snf7]"; KO "(1,2,3)K12195"; Scaffold002 rebuild exon 4865177 4865217 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.4"; Scaffold002 rebuild exon 4865301 4865382 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.4"; Scaffold002 rebuild exon 4865449 4865709 . + . gene_id "RvY_05035"; transcript_id "RvY_05035.4"; Scaffold002 rebuild transcript 4866139 4869734 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; gene_name "ABCF3"; annotation "ATP-binding cassette sub-family F member 3"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_tran_2] ABC transporter|[AAA_22] AAA domain|[AAA_29] P-loop containing region of AAA domain|[Miro] Miro-like protein|[AAA_15] AAA ATPase domain|[DUF258] Protein of unknown function, DUF258|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]"; KO "K06158"; similar_genes "ABCF3_RAT(e-value:1.3e-57;bit-score:220.0)"; Scaffold002 rebuild exon 4866139 4866210 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4866283 4866369 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4866433 4866492 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4866562 4866906 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4866983 4867166 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4867272 4867348 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4867454 4867654 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4867729 4867864 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4867927 4868085 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4868150 4868311 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4868372 4868476 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4868545 4868676 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4868755 4868855 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4868958 4869126 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4869230 4869338 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4869428 4869463 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild exon 4869656 4869734 . - . gene_id "RvY_05036"; transcript_id "RvY_05036.1"; Scaffold002 rebuild transcript 4870234 4870700 . + . gene_id "RvY_05037"; transcript_id "RvY_05037.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4870234 4870481 . + . gene_id "RvY_05037"; transcript_id "RvY_05037.1"; Scaffold002 rebuild exon 4870550 4870700 . + . gene_id "RvY_05037"; transcript_id "RvY_05037.1"; Scaffold002 rebuild transcript 4870234 4870524 . + . gene_id "RvY_05037"; transcript_id "RvY_05037.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4870234 4870524 . + . gene_id "RvY_05037"; transcript_id "RvY_05037.2"; Scaffold002 rebuild transcript 4871267 4872248 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4871267 4871311 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; Scaffold002 rebuild exon 4871402 4871595 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; Scaffold002 rebuild exon 4871724 4871795 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; Scaffold002 rebuild exon 4871861 4871906 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; Scaffold002 rebuild exon 4871992 4872108 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; Scaffold002 rebuild exon 4872192 4872248 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.1"; Scaffold002 rebuild transcript 4872162 4872703 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4872162 4872360 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.2"; Scaffold002 rebuild exon 4872441 4872703 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.2"; Scaffold002 rebuild transcript 4871267 4872066 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4871267 4871311 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.3"; Scaffold002 rebuild exon 4871402 4871595 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.3"; Scaffold002 rebuild exon 4871724 4871795 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.3"; Scaffold002 rebuild exon 4871861 4871906 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.3"; Scaffold002 rebuild exon 4871992 4872066 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.3"; Scaffold002 rebuild transcript 4871568 4872248 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4871568 4871626 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.4"; Scaffold002 rebuild exon 4871724 4871795 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.4"; Scaffold002 rebuild exon 4871861 4871906 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.4"; Scaffold002 rebuild exon 4871992 4872108 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.4"; Scaffold002 rebuild exon 4872192 4872248 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.4"; Scaffold002 rebuild transcript 4871267 4871769 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.5"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4871267 4871311 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.5"; Scaffold002 rebuild exon 4871402 4871595 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.5"; Scaffold002 rebuild exon 4871724 4871769 . - . gene_id "RvY_05038"; transcript_id "RvY_05038.5"; Scaffold002 rebuild transcript 4873864 4875494 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4873864 4874634 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; Scaffold002 rebuild exon 4874701 4874845 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; Scaffold002 rebuild exon 4874914 4874971 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; Scaffold002 rebuild exon 4875053 4875133 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; Scaffold002 rebuild exon 4875195 4875244 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; Scaffold002 rebuild exon 4875322 4875494 . - . gene_id "RvY_05039"; transcript_id "RvY_05039.1"; Scaffold002 rebuild transcript 4876211 4878180 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; gene_name "CDC_Septin"; annotation "putative Septin-4"; Pfam "[Septin]"; CDD "CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities."; similar_genes "SEPT4_HUMAN(e-value:4.2e-33;bit-score:139.0)"; Scaffold002 rebuild exon 4876211 4876364 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4876485 4876628 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4876695 4876795 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4876881 4876952 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4877049 4877077 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4877180 4877297 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4877361 4877407 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4877498 4877528 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4877597 4877763 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4877849 4877941 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild exon 4878012 4878180 . + . gene_id "RvY_05040"; transcript_id "RvY_05040.1"; Scaffold002 rebuild transcript 4878618 4878917 . + . gene_id "RvY_05041"; transcript_id "RvY_05041.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4878618 4878917 . + . gene_id "RvY_05041"; transcript_id "RvY_05041.1"; Scaffold002 rebuild transcript 4878997 4880895 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4878997 4879166 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; Scaffold002 rebuild exon 4879596 4879760 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; Scaffold002 rebuild exon 4879833 4880109 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; Scaffold002 rebuild exon 4880179 4880334 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; Scaffold002 rebuild exon 4880453 4880747 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; Scaffold002 rebuild exon 4880852 4880895 . - . gene_id "RvY_05042"; transcript_id "RvY_05042.1"; Scaffold002 rebuild transcript 4881534 4889497 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; gene_name "HrpA"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "YTDC2_MOUSE(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 4881534 4882165 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4882235 4882403 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4882489 4882692 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4882808 4883029 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4883320 4883523 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4883591 4883761 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4883838 4883967 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4884045 4884087 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4884152 4884303 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4884373 4884477 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4884561 4884658 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4884752 4884886 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4884965 4885127 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4885283 4885503 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4885570 4885668 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4885752 4885862 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4885984 4886105 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4886181 4886264 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4886469 4886591 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4886696 4886783 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4886840 4886938 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4887022 4887168 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4887246 4887440 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4887646 4887786 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4887845 4887949 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4888038 4888102 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4888165 4888380 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4888625 4888757 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4888838 4888956 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4889029 4889232 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild exon 4889308 4889497 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.1"; Scaffold002 rebuild transcript 4881534 4889497 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; gene_name "HrpA"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "YTDC2_MOUSE(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 4881534 4882165 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4882235 4882403 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4882489 4882692 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4882808 4883029 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4883320 4883523 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4883591 4883761 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4883838 4883967 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4884045 4884087 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4884152 4884303 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4884373 4884477 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4884561 4884658 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4884752 4884886 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4884965 4885127 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4885283 4885503 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4885570 4885668 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4885752 4885862 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4885984 4886105 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4886181 4886264 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4886469 4886591 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4886696 4886783 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4886840 4886938 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4887022 4887168 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4887246 4887440 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4887646 4887786 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4887845 4887949 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4888038 4888102 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4888625 4888757 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4888838 4888956 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4889029 4889232 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild exon 4889308 4889497 . + . gene_id "RvY_05043"; transcript_id "RvY_05043.2"; Scaffold002 rebuild transcript 4890122 4890601 . - . gene_id "RvY_05044"; transcript_id "RvY_05044.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4890122 4890601 . - . gene_id "RvY_05044"; transcript_id "RvY_05044.1"; Scaffold002 rebuild transcript 4890681 4891172 . + . gene_id "RvY_05045"; transcript_id "RvY_05045.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4890681 4891172 . + . gene_id "RvY_05045"; transcript_id "RvY_05045.1"; Scaffold002 rebuild transcript 4891841 4893936 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; gene_name "ALG1"; annotation "beta-1,4-mannosyltransferase [EC:2.4.1.142]"; Pfam "[Glyco_trans_4_4] Glycosyl transferase 4-like domain|[Glyco_trans_1_4] Glycosyl transferases group 1|[Glycos_transf_1] Glycosyl transferases group 1"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik."; EC "EC2.4.1.142"; KO "K03842"; similar_genes "ALG1_PONAB(e-value:5.1e-25;bit-score:112.0)"; Scaffold002 rebuild exon 4891841 4892039 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4892102 4892286 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4892353 4892603 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4892729 4892836 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4892919 4893136 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4893199 4893309 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4893400 4893514 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild exon 4893615 4893936 . + . gene_id "RvY_05046"; transcript_id "RvY_05046.1"; Scaffold002 rebuild transcript 4893967 4894769 . - . gene_id "RvY_05047"; transcript_id "RvY_05047.1"; annotation "hypothetical protein."; Pfam "[CD20] CD20-like family"; Scaffold002 rebuild exon 4893967 4894129 . - . gene_id "RvY_05047"; transcript_id "RvY_05047.1"; Scaffold002 rebuild exon 4894195 4894288 . - . gene_id "RvY_05047"; transcript_id "RvY_05047.1"; Scaffold002 rebuild exon 4894400 4894769 . - . gene_id "RvY_05047"; transcript_id "RvY_05047.1"; Scaffold002 rebuild transcript 4895439 4896180 . - . gene_id "RvY_05048"; transcript_id "RvY_05048.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4895439 4895992 . - . gene_id "RvY_05048"; transcript_id "RvY_05048.1"; Scaffold002 rebuild exon 4896093 4896180 . - . gene_id "RvY_05048"; transcript_id "RvY_05048.1"; Scaffold002 rebuild transcript 4896658 4900095 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; gene_name "ACSS"; annotation "Acetyl-coenzyme A synthetase 2-like, mitochondrial"; Pfam "[DUF4009]|[AMP-binding] AMP-binding enzyme|[DUF3448]"; CDD "acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA"; EC "EC6.2.1.1"; KO "K01895"; similar_genes "ACS2L_MOUSE(e-value:4.1e-84;bit-score:308.0)"; Scaffold002 rebuild exon 4896658 4896947 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4897016 4897149 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4897273 4897490 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4897550 4897646 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4897723 4897898 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4897976 4898054 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4898183 4898313 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4898396 4898647 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4898708 4898766 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4898850 4898900 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4898996 4899068 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4899141 4899364 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4899463 4899493 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4899559 4899741 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4899812 4899954 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild exon 4900020 4900095 . + . gene_id "RvY_05049"; transcript_id "RvY_05049.1"; Scaffold002 rebuild transcript 4900380 4904058 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; gene_name "yhhT"; annotation "hypothetical protein."; Pfam "[UPF0118] Domain of unknown function DUF20"; CDD "Predicted permease, member of the PurR regulon [General function prediction only]"; Scaffold002 rebuild exon 4900380 4900548 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4900637 4900749 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4900807 4900966 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4901053 4901189 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4901277 4901399 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4901465 4901827 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4901893 4902171 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4902231 4902386 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4902492 4903193 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4903399 4903582 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4903642 4903748 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild exon 4903813 4904058 . - . gene_id "RvY_05050"; transcript_id "RvY_05050.1"; Scaffold002 rebuild transcript 4905415 4907726 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; gene_name "SLC16A12"; annotation "MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 12"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; KO "K11810"; Scaffold002 rebuild exon 4905415 4905802 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4905885 4906028 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4906308 4906390 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4906468 4906958 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4907056 4907156 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4907257 4907280 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4907352 4907453 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild exon 4907551 4907726 . + . gene_id "RvY_05051"; transcript_id "RvY_05051.1"; Scaffold002 rebuild transcript 4908063 4911885 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; annotation "hypothetical protein."; Pfam "[FH2] Formin Homology 2 Domain"; Scaffold002 rebuild exon 4908063 4908434 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4908495 4908562 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4908681 4908912 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4908977 4909234 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4909302 4909402 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4909501 4909567 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4909654 4909787 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4909855 4910588 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4910710 4910807 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4910920 4911305 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4911415 4911609 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild exon 4911693 4911885 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.1"; Scaffold002 rebuild transcript 4908063 4911885 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; annotation "hypothetical protein."; Pfam "[FH2] Formin Homology 2 Domain"; Scaffold002 rebuild exon 4908063 4908434 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4908495 4908562 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4908681 4908912 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4908977 4909234 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4909302 4909402 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4909501 4909567 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4909654 4909787 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4909855 4910588 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4910722 4910807 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4910920 4911305 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4911415 4911609 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild exon 4911693 4911885 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.2"; Scaffold002 rebuild transcript 4908435 4911885 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; annotation "hypothetical protein."; Pfam "[FH2] Formin Homology 2 Domain"; Scaffold002 rebuild exon 4908435 4908437 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4908495 4908562 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4908681 4908912 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4908977 4909234 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4909302 4909402 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4909501 4909567 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4909654 4909787 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4909855 4910588 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4910710 4910807 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4910920 4911305 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4911415 4911609 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild exon 4911693 4911885 . - . gene_id "RvY_05052"; transcript_id "RvY_05052.3"; Scaffold002 rebuild transcript 4911900 4912094 . + . gene_id "RvY_05053"; transcript_id "RvY_05053.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4911900 4912094 . + . gene_id "RvY_05053"; transcript_id "RvY_05053.1"; Scaffold002 rebuild transcript 4912524 4915918 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; product "AMP-activated-Kinase-c"; gene_name "PRKAA"; annotation "AMP-activated-Kinase-c | 5'-AMP-activated protein kinase catalytic subunit alpha-2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1|EC2.7.11.11"; KO "K07198"; similar_genes "AAPK2_CAEEL(e-value:6.1e-134;bit-score:474.0)"; Scaffold002 rebuild exon 4912524 4912526 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4912976 4913074 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4913246 4913285 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4913368 4913509 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4913591 4913684 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4913748 4913892 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4913960 4914117 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4914186 4914234 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4914299 4914404 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4914530 4914635 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4914701 4914931 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4915008 4915050 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4915112 4915204 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4915281 4915417 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4915501 4915618 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild exon 4915692 4915918 . + . gene_id "RvY_05054"; transcript_id "RvY_05054.1"; Scaffold002 rebuild transcript 4916482 4920424 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold002 rebuild exon 4916482 4916953 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4917259 4917355 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4917453 4917708 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4917785 4917932 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4918003 4918189 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4918300 4918440 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4918511 4918846 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4918909 4919020 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4919120 4919289 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4919359 4919536 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4919598 4919770 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4919844 4919907 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4919964 4920038 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4920121 4920183 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild exon 4920275 4920424 . - . gene_id "RvY_05055"; transcript_id "RvY_05055.1"; Scaffold002 rebuild transcript 4921273 4924074 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; annotation "hypothetical protein."; Pfam "[KH_1] KH domain|[KH_3] KH domain"; Scaffold002 rebuild exon 4921273 4921385 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4921448 4921669 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4921769 4922324 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4922450 4922529 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4922592 4922655 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4922730 4922945 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4923051 4923287 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4923410 4923463 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4923588 4923767 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild exon 4923823 4924074 . - . gene_id "RvY_05056"; transcript_id "RvY_05056.1"; Scaffold002 rebuild transcript 4924629 4926551 . + . gene_id "RvY_05057"; transcript_id "RvY_05057.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4924629 4925100 . + . gene_id "RvY_05057"; transcript_id "RvY_05057.1"; Scaffold002 rebuild exon 4925168 4925653 . + . gene_id "RvY_05057"; transcript_id "RvY_05057.1"; Scaffold002 rebuild exon 4925725 4926551 . + . gene_id "RvY_05057"; transcript_id "RvY_05057.1"; Scaffold002 rebuild transcript 4926901 4929229 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; gene_name "LDLa"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain|[Polysacc_deac_1] Polysaccharide deacetylase|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure"; Scaffold002 rebuild exon 4926901 4927407 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4927488 4927938 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4928001 4928060 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4928117 4928207 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4928275 4928546 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4928639 4928735 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4928819 4929103 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild exon 4929181 4929229 . - . gene_id "RvY_05058"; transcript_id "RvY_05058.1"; Scaffold002 rebuild transcript 4930010 4933645 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; gene_name "UBE4A"; annotation "ubiquitin conjugation factor E4 A [EC:6.3.2.19]"; Pfam "[U-box]|[Ufd2P_core] Ubiquitin elongating factor core"; EC "EC6.3.2.19"; KO "K10596"; similar_genes "UBE4A_BOVIN(e-value:5.2e-10;bit-score:62.0)"; Scaffold002 rebuild exon 4930010 4930928 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; Scaffold002 rebuild exon 4931014 4931067 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; Scaffold002 rebuild exon 4931141 4931629 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; Scaffold002 rebuild exon 4931850 4932180 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; Scaffold002 rebuild exon 4932239 4932799 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; Scaffold002 rebuild exon 4932943 4933645 . - . gene_id "RvY_05059"; transcript_id "RvY_05059.1"; Scaffold002 rebuild transcript 4935684 4937266 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; annotation "putative MMP37-like protein, mitochondrial"; Pfam "[Mmp37] Mitochondrial matrix Mmp37"; similar_genes "MMP37_XENLA(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 4935684 4935748 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4935825 4935887 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4935979 4936144 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4936221 4936366 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4936437 4936587 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4936674 4936766 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4936880 4937062 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild exon 4937138 4937266 . - . gene_id "RvY_05060"; transcript_id "RvY_05060.1"; Scaffold002 rebuild transcript 4937692 4940738 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; gene_name "LMBR1"; annotation "LMBR1 domain-containing protein 2"; Pfam "[LMBR1] LMBR1-like membrane protein"; CDD "LMBR1-like membrane protein. Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor"; similar_genes "LMBD2_HUMAN(e-value:1.7e-55;bit-score:213.0)"; Scaffold002 rebuild exon 4937692 4937865 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4937932 4938173 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4938251 4938418 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4938482 4938692 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4938775 4938849 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4938927 4939227 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4939303 4939484 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4939598 4939731 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4939815 4939920 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4939991 4940192 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4940267 4940380 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild exon 4940461 4940738 . + . gene_id "RvY_05061"; transcript_id "RvY_05061.1"; Scaffold002 rebuild transcript 4940898 4941636 . - . gene_id "RvY_05062"; transcript_id "RvY_05062.1"; annotation "hypothetical protein."; Pfam "[Transmemb_17] Predicted membrane protein"; Scaffold002 rebuild exon 4940898 4941146 . - . gene_id "RvY_05062"; transcript_id "RvY_05062.1"; Scaffold002 rebuild exon 4941222 4941335 . - . gene_id "RvY_05062"; transcript_id "RvY_05062.1"; Scaffold002 rebuild exon 4941413 4941516 . - . gene_id "RvY_05062"; transcript_id "RvY_05062.1"; Scaffold002 rebuild exon 4941588 4941636 . - . gene_id "RvY_05062"; transcript_id "RvY_05062.1"; Scaffold002 rebuild transcript 4942271 4944338 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; gene_name "SLC16A12"; annotation "MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 12"; Pfam "[MFS_1] Major Facilitator Superfamily|[Nodulin-like]"; CDD "monocarboxylate transporter 1."; KO "K11810"; Scaffold002 rebuild exon 4942271 4942419 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4942491 4942551 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4942631 4942668 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4942755 4942781 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4942855 4943154 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4943221 4943658 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4943734 4944034 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild exon 4944159 4944338 . - . gene_id "RvY_05063"; transcript_id "RvY_05063.1"; Scaffold002 rebuild transcript 4945264 4947413 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; gene_name "ATG4"; annotation "autophagy-related protein 4 [EC:3.4.22.-]"; Pfam "[Peptidase_C54] Peptidase family C54"; EC "EC3.4.22.-"; KO "K08342"; similar_genes "ATG4C_HUMAN(e-value:1.4e-18;bit-score:91.0)"; Scaffold002 rebuild exon 4945264 4945543 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4945645 4945734 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4945859 4945997 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4946056 4946258 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4946354 4946393 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4946483 4946559 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4946642 4946814 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4946873 4947001 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4947074 4947193 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild exon 4947255 4947413 . + . gene_id "RvY_05064"; transcript_id "RvY_05064.1"; Scaffold002 rebuild transcript 4945275 4946152 . - . gene_id "RvY_05065"; transcript_id "RvY_05065.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4945275 4945508 . - . gene_id "RvY_05065"; transcript_id "RvY_05065.1"; Scaffold002 rebuild exon 4946048 4946152 . - . gene_id "RvY_05065"; transcript_id "RvY_05065.1"; Scaffold002 rebuild transcript 4947612 4949756 . - . gene_id "RvY_05066"; transcript_id "RvY_05066.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; Scaffold002 rebuild exon 4947612 4948376 . - . gene_id "RvY_05066"; transcript_id "RvY_05066.1"; Scaffold002 rebuild exon 4948585 4948629 . - . gene_id "RvY_05066"; transcript_id "RvY_05066.1"; Scaffold002 rebuild exon 4948761 4949143 . - . gene_id "RvY_05066"; transcript_id "RvY_05066.1"; Scaffold002 rebuild exon 4949297 4949536 . - . gene_id "RvY_05066"; transcript_id "RvY_05066.1"; Scaffold002 rebuild exon 4949630 4949756 . - . gene_id "RvY_05066"; transcript_id "RvY_05066.1"; Scaffold002 rebuild transcript 4950324 4950725 . + . gene_id "RvY_05067"; transcript_id "RvY_05067.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4950324 4950597 . + . gene_id "RvY_05067"; transcript_id "RvY_05067.1"; Scaffold002 rebuild exon 4950661 4950725 . + . gene_id "RvY_05067"; transcript_id "RvY_05067.1"; Scaffold002 rebuild transcript 4951057 4951807 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4951057 4951332 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.1"; Scaffold002 rebuild exon 4951389 4951434 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.1"; Scaffold002 rebuild exon 4951761 4951807 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.1"; Scaffold002 rebuild transcript 4951057 4951442 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4951057 4951332 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.2"; Scaffold002 rebuild exon 4951389 4951442 . + . gene_id "RvY_05068"; transcript_id "RvY_05068.2"; Scaffold002 rebuild transcript 4951808 4959021 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; gene_name "CACNA2D3"; annotation "calcium channel, voltage-dependent, alpha 2/delta subunit 3"; Pfam "[VWA_3] von Willebrand factor type A domain|[VWA_N] VWA N-terminal|[Cache_1] Cache domain|[VWA] von Willebrand factor type A domain|[VWA_2] von Willebrand factor type A domain"; CDD "VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex."; KO "K04860"; similar_genes "CA2D3_RAT(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 4951808 4951962 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4952061 4952142 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4952348 4952458 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4952630 4952689 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4953061 4953208 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4953290 4953488 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4953631 4953781 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4953965 4954366 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4954442 4954525 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4954584 4954643 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4954707 4954787 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4954887 4954961 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4955056 4955157 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4955288 4955359 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4955795 4955856 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4955937 4956025 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4956874 4957023 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4957092 4957374 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4957445 4957548 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4957623 4957783 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4957858 4958033 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4958098 4958232 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4958315 4958527 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4958608 4958806 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild exon 4958899 4959021 . + . gene_id "RvY_05069"; transcript_id "RvY_05069.1"; Scaffold002 rebuild transcript 4959975 4965278 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; gene_name "DCTN1"; annotation "dynactin 1"; Pfam "[CAP_GLY] CAP-Gly domain|[Dynactin] Dynein associated protein"; KO "K04648"; similar_genes "DCTN1_CHICK(e-value:1.2e-11;bit-score:68.0)"; Scaffold002 rebuild exon 4959975 4960316 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild exon 4960397 4960673 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild exon 4960773 4961584 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild exon 4961732 4962578 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild exon 4962884 4963642 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild exon 4963905 4964542 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild exon 4965225 4965278 . + . gene_id "RvY_05070"; transcript_id "RvY_05070.1"; Scaffold002 rebuild transcript 4965529 4967512 . - . gene_id "RvY_05071"; transcript_id "RvY_05071.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4965529 4966007 . - . gene_id "RvY_05071"; transcript_id "RvY_05071.1"; Scaffold002 rebuild exon 4967104 4967512 . - . gene_id "RvY_05071"; transcript_id "RvY_05071.1"; Scaffold002 rebuild transcript 4969018 4970788 . - . gene_id "RvY_05072"; transcript_id "RvY_05072.1"; annotation "hypothetical protein."; Pfam "[CXC] Tesmin/TSO1-like CXC domain"; Scaffold002 rebuild exon 4969018 4969236 . - . gene_id "RvY_05072"; transcript_id "RvY_05072.1"; Scaffold002 rebuild exon 4969303 4969686 . - . gene_id "RvY_05072"; transcript_id "RvY_05072.1"; Scaffold002 rebuild exon 4969803 4969996 . - . gene_id "RvY_05072"; transcript_id "RvY_05072.1"; Scaffold002 rebuild exon 4970090 4970440 . - . gene_id "RvY_05072"; transcript_id "RvY_05072.1"; Scaffold002 rebuild exon 4970512 4970788 . - . gene_id "RvY_05072"; transcript_id "RvY_05072.1"; Scaffold002 rebuild transcript 4971476 4976372 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; gene_name "PCC"; annotation "hypothetical protein."; Pfam "[PKD]"; CDD "polycystin cation channel protein. Note: this model is restricted to the amino half because a full-length model is incompatible with the HMM software package."; Scaffold002 rebuild exon 4971476 4972244 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild exon 4972302 4973377 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild exon 4973451 4973790 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild exon 4973889 4974694 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild exon 4974781 4974982 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild exon 4975100 4975769 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild exon 4975910 4976372 . + . gene_id "RvY_05073"; transcript_id "RvY_05073.1"; Scaffold002 rebuild transcript 4977349 4978041 . - . gene_id "RvY_05074"; transcript_id "RvY_05074.1"; gene_name "PTF1A"; annotation "pancreas-specific transcription factor 1a"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09073"; similar_genes "PTF1A_RAT(e-value:1.9e-18;bit-score:90.0)"; Scaffold002 rebuild exon 4977349 4977512 . - . gene_id "RvY_05074"; transcript_id "RvY_05074.1"; Scaffold002 rebuild exon 4977591 4978041 . - . gene_id "RvY_05074"; transcript_id "RvY_05074.1"; Scaffold002 rebuild transcript 4979631 4980985 . - . gene_id "RvY_05075"; transcript_id "RvY_05075.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4979631 4979702 . - . gene_id "RvY_05075"; transcript_id "RvY_05075.1"; Scaffold002 rebuild exon 4979768 4979992 . - . gene_id "RvY_05075"; transcript_id "RvY_05075.1"; Scaffold002 rebuild exon 4980086 4980656 . - . gene_id "RvY_05075"; transcript_id "RvY_05075.1"; Scaffold002 rebuild exon 4980732 4980985 . - . gene_id "RvY_05075"; transcript_id "RvY_05075.1"; Scaffold002 rebuild transcript 4982255 4985175 . + . gene_id "RvY_05076"; transcript_id "RvY_05076.1"; gene_name "pheT_arch"; annotation "hypothetical protein."; Pfam "[B3_4] B3/4 domain|[LRR_8] Leucine rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes."; similar_genes "LRC47_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold002 rebuild exon 4982255 4982297 . + . gene_id "RvY_05076"; transcript_id "RvY_05076.1"; Scaffold002 rebuild exon 4982387 4982581 . + . gene_id "RvY_05076"; transcript_id "RvY_05076.1"; Scaffold002 rebuild exon 4982852 4983594 . + . gene_id "RvY_05076"; transcript_id "RvY_05076.1"; Scaffold002 rebuild exon 4984447 4984682 . + . gene_id "RvY_05076"; transcript_id "RvY_05076.1"; Scaffold002 rebuild exon 4984761 4985175 . + . gene_id "RvY_05076"; transcript_id "RvY_05076.1"; Scaffold002 rebuild transcript 4985414 4988973 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; annotation "hypothetical protein."; Pfam "[Nup84_Nup100] Nuclear pore protein 84 / 107"; KO "K14301"; Scaffold002 rebuild exon 4985414 4985572 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4985644 4985904 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4985969 4986049 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4986251 4986390 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4986488 4986587 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4986673 4986812 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4986892 4986988 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4987068 4987389 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4987497 4987699 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4987802 4988053 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4988119 4988331 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4988410 4988635 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4988712 4988796 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild exon 4988859 4988973 . - . gene_id "RvY_05077"; transcript_id "RvY_05077.1"; Scaffold002 rebuild transcript 4990238 4991326 . + . gene_id "RvY_05078"; transcript_id "RvY_05078.1"; gene_name "UBCc"; annotation "hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the Scaffold002 rebuild exon 4990238 4990317 . + . gene_id "RvY_05078"; transcript_id "RvY_05078.1"; Scaffold002 rebuild exon 4990418 4990482 . + . gene_id "RvY_05078"; transcript_id "RvY_05078.1"; Scaffold002 rebuild exon 4990553 4990730 . + . gene_id "RvY_05078"; transcript_id "RvY_05078.1"; Scaffold002 rebuild exon 4990860 4991081 . + . gene_id "RvY_05078"; transcript_id "RvY_05078.1"; Scaffold002 rebuild exon 4991206 4991326 . + . gene_id "RvY_05078"; transcript_id "RvY_05078.1"; Scaffold002 rebuild transcript 4991958 4993187 . - . gene_id "RvY_05079"; transcript_id "RvY_05079.1"; gene_name "eIF-4A3"; annotation "Eukaryotic initiation factor 4A-III"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K13025"; similar_genes "IF4A3_PIG(e-value:1.5e-200;bit-score:695.0)"; Scaffold002 rebuild exon 4991958 4993187 . - . gene_id "RvY_05079"; transcript_id "RvY_05079.1"; Scaffold002 rebuild transcript 4994120 4995081 . - . gene_id "RvY_05080"; transcript_id "RvY_05080.1"; annotation "hypothetical protein."; Pfam "[Trm112p] Trm112p-like protein"; KO "K15448"; similar_genes "TR112_BOVIN(e-value:1.6e-11;bit-score:67.0)"; Scaffold002 rebuild exon 4994120 4994224 . - . gene_id "RvY_05080"; transcript_id "RvY_05080.1"; Scaffold002 rebuild exon 4994491 4994583 . - . gene_id "RvY_05080"; transcript_id "RvY_05080.1"; Scaffold002 rebuild exon 4994721 4994822 . - . gene_id "RvY_05080"; transcript_id "RvY_05080.1"; Scaffold002 rebuild exon 4994920 4995081 . - . gene_id "RvY_05080"; transcript_id "RvY_05080.1"; Scaffold002 rebuild transcript 4995098 4995343 . + . gene_id "RvY_05081"; transcript_id "RvY_05081.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4995098 4995343 . + . gene_id "RvY_05081"; transcript_id "RvY_05081.1"; Scaffold002 rebuild transcript 4996017 4998721 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; gene_name "G6PD"; annotation "Glucose-6-phosphate 1-dehydrogenase"; Pfam "[G6PD_N] Glucose-6-phosphate dehydrogenase, NAD binding domain|[G6PD_C] Glucose-6-phosphate dehydrogenase, C-terminal domain"; CDD "glucose-6-phosphate dehydrogenase; Provisional"; EC "EC1.1.1.49"; KO "K00036"; similar_genes "G6PD_DROME(e-value:1.9e-86;bit-score:316.0)"; Scaffold002 rebuild exon 4996017 4996292 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4996441 4996649 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4996747 4996966 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4997141 4997234 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4997360 4997485 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4997753 4997911 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4997988 4998208 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4998327 4998435 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild exon 4998531 4998721 . - . gene_id "RvY_05082"; transcript_id "RvY_05082.1"; Scaffold002 rebuild transcript 4999756 5000014 . - . gene_id "RvY_05083"; transcript_id "RvY_05083.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4999756 4999828 . - . gene_id "RvY_05083"; transcript_id "RvY_05083.1"; Scaffold002 rebuild exon 4999944 5000014 . - . gene_id "RvY_05083"; transcript_id "RvY_05083.1"; Scaffold002 rebuild transcript 4999915 5000846 . + . gene_id "RvY_05084"; transcript_id "RvY_05084.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 4999915 5000259 . + . gene_id "RvY_05084"; transcript_id "RvY_05084.1"; Scaffold002 rebuild exon 5000769 5000846 . + . gene_id "RvY_05084"; transcript_id "RvY_05084.1"; Scaffold002 rebuild transcript 5000877 5003807 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; gene_name "tktA"; annotation "Transketolase-like protein 2"; Pfam "[Transket_pyr] Transketolase, pyrimidine binding domain|[Transketolase_N] Transketolase, thiamine diphosphate binding domain|[E1_dh] Dehydrogenase E1 component|[DXP_synthase_N] 1-deoxy-D-xylulose-5-phosphate synthase|[Transketolase_C] Transketolase, C-terminal domain|[XFP_N] XFP N-terminal domain"; CDD "transketolase; Reviewed"; EC "EC2.2.1.1"; KO "K00615"; similar_genes "TKTL2_MOUSE(e-value:3.0e-112;bit-score:402.0)"; Scaffold002 rebuild exon 5000877 5001001 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5001097 5001214 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5001296 5001409 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5001471 5001568 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5001678 5001869 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5001941 5002068 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5002154 5002353 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5002444 5002624 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5002828 5003183 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5003332 5003548 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild exon 5003620 5003807 . + . gene_id "RvY_05085"; transcript_id "RvY_05085.1"; Scaffold002 rebuild transcript 5004296 5005078 . - . gene_id "RvY_05086"; transcript_id "RvY_05086.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5004296 5004757 . - . gene_id "RvY_05086"; transcript_id "RvY_05086.1"; Scaffold002 rebuild exon 5004842 5005078 . - . gene_id "RvY_05086"; transcript_id "RvY_05086.1"; Scaffold002 rebuild transcript 5004846 5005229 . - . gene_id "RvY_05086"; transcript_id "RvY_05086.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5004846 5005229 . - . gene_id "RvY_05086"; transcript_id "RvY_05086.2"; Scaffold002 rebuild transcript 5007128 5009889 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; gene_name "CAMK1"; annotation "Calcium/calmodulin-dependent protein kinase type 1D"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.17"; KO "K08794"; similar_genes "KCC1D_MOUSE(e-value:8.6e-110;bit-score:394.0)"; Scaffold002 rebuild exon 5007128 5007156 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5007529 5007861 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5008380 5008661 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5008737 5008811 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5008888 5009026 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5009101 5009227 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5009309 5009415 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5009483 5009734 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild exon 5009794 5009889 . + . gene_id "RvY_05087"; transcript_id "RvY_05087.1"; Scaffold002 rebuild transcript 5011387 5011563 . + . gene_id "RvY_05088"; transcript_id "RvY_05088.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5011387 5011563 . + . gene_id "RvY_05088"; transcript_id "RvY_05088.1"; Scaffold002 rebuild transcript 5013178 5014170 . + . gene_id "RvY_05089"; transcript_id "RvY_05089.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5013178 5013280 . + . gene_id "RvY_05089"; transcript_id "RvY_05089.1"; Scaffold002 rebuild exon 5013623 5014170 . + . gene_id "RvY_05089"; transcript_id "RvY_05089.1"; Scaffold002 rebuild transcript 5014862 5017001 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; Scaffold002 rebuild exon 5014862 5015071 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015140 5015188 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015248 5015278 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015362 5015425 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015502 5015610 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015716 5015793 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015864 5015915 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5015985 5016042 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5016114 5016287 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5016431 5016537 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5016640 5016724 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild exon 5016807 5017001 . - . gene_id "RvY_05090"; transcript_id "RvY_05090.1"; Scaffold002 rebuild transcript 5017633 5019481 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; gene_name "FKBP6"; annotation "FK506-binding protein 6 [EC:5.2.1.8]"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat|[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; EC "EC5.2.1.8"; KO "K09572"; Scaffold002 rebuild exon 5017633 5017699 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; Scaffold002 rebuild exon 5017762 5018095 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; Scaffold002 rebuild exon 5018158 5018270 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; Scaffold002 rebuild exon 5018329 5018567 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; Scaffold002 rebuild exon 5018792 5018989 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; Scaffold002 rebuild exon 5019050 5019481 . + . gene_id "RvY_05091"; transcript_id "RvY_05091.1"; Scaffold002 rebuild transcript 5019851 5021599 . + . gene_id "RvY_05092"; transcript_id "RvY_05092.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5019851 5020556 . + . gene_id "RvY_05092"; transcript_id "RvY_05092.1"; Scaffold002 rebuild exon 5020656 5021035 . + . gene_id "RvY_05092"; transcript_id "RvY_05092.1"; Scaffold002 rebuild exon 5021090 5021191 . + . gene_id "RvY_05092"; transcript_id "RvY_05092.1"; Scaffold002 rebuild exon 5021276 5021599 . + . gene_id "RvY_05092"; transcript_id "RvY_05092.1"; Scaffold002 rebuild transcript 5021778 5022850 . - . gene_id "RvY_05093"; transcript_id "RvY_05093.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5021778 5021813 . - . gene_id "RvY_05093"; transcript_id "RvY_05093.1"; Scaffold002 rebuild exon 5021875 5022016 . - . gene_id "RvY_05093"; transcript_id "RvY_05093.1"; Scaffold002 rebuild exon 5022106 5022185 . - . gene_id "RvY_05093"; transcript_id "RvY_05093.1"; Scaffold002 rebuild exon 5022264 5022713 . - . gene_id "RvY_05093"; transcript_id "RvY_05093.1"; Scaffold002 rebuild exon 5022779 5022850 . - . gene_id "RvY_05093"; transcript_id "RvY_05093.1"; Scaffold002 rebuild transcript 5023895 5024981 . + . gene_id "RvY_05094"; transcript_id "RvY_05094.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5023895 5024063 . + . gene_id "RvY_05094"; transcript_id "RvY_05094.1"; Scaffold002 rebuild exon 5024196 5024434 . + . gene_id "RvY_05094"; transcript_id "RvY_05094.1"; Scaffold002 rebuild exon 5024504 5024689 . + . gene_id "RvY_05094"; transcript_id "RvY_05094.1"; Scaffold002 rebuild exon 5024946 5024981 . + . gene_id "RvY_05094"; transcript_id "RvY_05094.1"; Scaffold002 rebuild transcript 5025489 5026807 . - . gene_id "RvY_05095"; transcript_id "RvY_05095.1"; product "Rad51a"; gene_name "RAD51"; annotation "Rad51a | DNA repair protein RAD51 homolog 1"; Pfam "[RecA] recA bacterial DNA recombination protein|[AAA_25] AAA domain|[KaiC]|[Rad51]"; CDD "DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012)."; KO "K04482"; similar_genes "RAD51_HUMAN(e-value:6.6e-93;bit-score:338.0)"; Scaffold002 rebuild exon 5025489 5026029 . - . gene_id "RvY_05095"; transcript_id "RvY_05095.1"; Scaffold002 rebuild exon 5026131 5026177 . - . gene_id "RvY_05095"; transcript_id "RvY_05095.1"; Scaffold002 rebuild exon 5026232 5026491 . - . gene_id "RvY_05095"; transcript_id "RvY_05095.1"; Scaffold002 rebuild exon 5026573 5026807 . - . gene_id "RvY_05095"; transcript_id "RvY_05095.1"; Scaffold002 rebuild transcript 5027777 5030967 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; gene_name "CCT5"; annotation "T-complex protein 1 subunit epsilon"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin."; KO "K09497"; similar_genes "TCPE1_AVESA(e-value:2.6e-183;bit-score:638.0)"; Scaffold002 rebuild exon 5027777 5027881 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5028092 5028152 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5028217 5028381 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5028588 5028786 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5028979 5029171 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5029411 5029680 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5029890 5030075 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5030356 5030674 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild exon 5030840 5030967 . + . gene_id "RvY_05096"; transcript_id "RvY_05096.1"; Scaffold002 rebuild transcript 5031554 5033221 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; gene_name "K07124"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.1.-"; KO "K07124"; similar_genes "MKAR_PICST(e-value:1.6e-17;bit-score:87.0)"; Scaffold002 rebuild exon 5031554 5031634 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5031707 5031853 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5031921 5032115 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5032250 5032356 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5032433 5032546 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5032630 5032705 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5032782 5032828 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild exon 5032963 5033221 . - . gene_id "RvY_05097"; transcript_id "RvY_05097.1"; Scaffold002 rebuild transcript 5034027 5034248 . + . gene_id "RvY_05098"; transcript_id "RvY_05098.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5034027 5034248 . + . gene_id "RvY_05098"; transcript_id "RvY_05098.1"; Scaffold002 rebuild transcript 5034274 5035477 . + . gene_id "RvY_05099"; transcript_id "RvY_05099.1"; gene_name "K06980"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[GCV_T_C] Glycine cleavage T-protein C-terminal barrel domain|[GCV_T] Aminomethyltransferase folate-binding domain"; CDD "Predicted aminomethyltransferase related to GcvT [General function prediction only]"; EC "EC2.1.-.-"; KO "K06980"; similar_genes "CA069_DANRE(e-value:1.9e-20;bit-score:97.0)"; Scaffold002 rebuild exon 5034274 5034949 . + . gene_id "RvY_05099"; transcript_id "RvY_05099.1"; Scaffold002 rebuild exon 5035020 5035477 . + . gene_id "RvY_05099"; transcript_id "RvY_05099.1"; Scaffold002 rebuild transcript 5035906 5039025 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; annotation "hypothetical protein."; Pfam "[KAP] Kinesin-associated protein (KAP)"; Scaffold002 rebuild exon 5035906 5035931 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5035999 5036127 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5036210 5036361 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5036462 5036656 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5036728 5036837 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5036918 5037510 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5037663 5037955 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5038025 5038332 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5038409 5038624 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5038703 5038778 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild exon 5038853 5039025 . + . gene_id "RvY_05100"; transcript_id "RvY_05100.1"; Scaffold002 rebuild transcript 5039982 5043848 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain|[PAN_1] PAN domain"; Scaffold002 rebuild exon 5039982 5040158 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5040232 5040370 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5040494 5040639 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5040711 5040852 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5040960 5041259 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5041336 5041934 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5042020 5042299 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5042508 5043045 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5043108 5043252 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5043379 5043547 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild exon 5043682 5043848 . + . gene_id "RvY_05101"; transcript_id "RvY_05101.1"; Scaffold002 rebuild transcript 5043857 5044785 . - . gene_id "RvY_05102"; transcript_id "RvY_05102.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5043857 5043895 . - . gene_id "RvY_05102"; transcript_id "RvY_05102.1"; Scaffold002 rebuild exon 5044059 5044348 . - . gene_id "RvY_05102"; transcript_id "RvY_05102.1"; Scaffold002 rebuild exon 5044656 5044785 . - . gene_id "RvY_05102"; transcript_id "RvY_05102.1"; Scaffold002 rebuild transcript 5045151 5047113 . - . gene_id "RvY_05103"; transcript_id "RvY_05103.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5045151 5045214 . - . gene_id "RvY_05103"; transcript_id "RvY_05103.1"; Scaffold002 rebuild exon 5046250 5046384 . - . gene_id "RvY_05103"; transcript_id "RvY_05103.1"; Scaffold002 rebuild exon 5046803 5047113 . - . gene_id "RvY_05103"; transcript_id "RvY_05103.1"; Scaffold002 rebuild transcript 5047968 5052237 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; gene_name "TBC"; annotation "putative TBC1 domain family member 30"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBC30_XENTR(e-value:6.8e-27;bit-score:118.0)"; Scaffold002 rebuild exon 5047968 5048529 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5048777 5048887 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5049196 5049237 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5050047 5050171 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5050244 5050405 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5050470 5050583 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5050648 5050683 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5050748 5050913 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5051221 5051341 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5051403 5051459 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild exon 5051520 5052237 . + . gene_id "RvY_05104"; transcript_id "RvY_05104.1"; Scaffold002 rebuild transcript 5052610 5054375 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; gene_name "qor"; annotation "NADPH2:quinone reductase [EC:1.6.5.5]"; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N_2] Zinc-binding dehydrogenase|[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]"; EC "EC1.6.5.5"; KO "K00344"; similar_genes "QOR_MOUSE(e-value:1.9e-22;bit-score:104.0)"; Scaffold002 rebuild exon 5052610 5052711 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild exon 5052799 5052948 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild exon 5053003 5053159 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild exon 5053249 5053270 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild exon 5053362 5053563 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild exon 5053635 5053806 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild exon 5053879 5054375 . + . gene_id "RvY_05105"; transcript_id "RvY_05105.1"; Scaffold002 rebuild transcript 5054322 5056637 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5054322 5054447 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5054527 5054622 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5054703 5054979 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5055040 5055183 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5055270 5055574 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5055669 5055826 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5056021 5056286 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5056344 5056438 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild exon 5056575 5056637 . - . gene_id "RvY_05106"; transcript_id "RvY_05106.1"; Scaffold002 rebuild transcript 5059976 5060476 . + . gene_id "RvY_05107"; transcript_id "RvY_05107.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5059976 5060476 . + . gene_id "RvY_05107"; transcript_id "RvY_05107.1"; Scaffold002 rebuild transcript 5060644 5062683 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 5060644 5060776 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; Scaffold002 rebuild exon 5060856 5061255 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; Scaffold002 rebuild exon 5061355 5061652 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; Scaffold002 rebuild exon 5061772 5061921 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; Scaffold002 rebuild exon 5062014 5062215 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; Scaffold002 rebuild exon 5062286 5062683 . + . gene_id "RvY_05108"; transcript_id "RvY_05108.1"; Scaffold002 rebuild transcript 5063668 5064401 . + . gene_id "RvY_05109"; transcript_id "RvY_05109.1"; annotation "hypothetical protein."; Pfam "[L51_S25_CI-B8] Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain"; similar_genes "RT25_DROME(e-value:2.0e-07;bit-score:54.0)"; Scaffold002 rebuild exon 5063668 5063813 . + . gene_id "RvY_05109"; transcript_id "RvY_05109.1"; Scaffold002 rebuild exon 5063932 5064038 . + . gene_id "RvY_05109"; transcript_id "RvY_05109.1"; Scaffold002 rebuild exon 5064103 5064401 . + . gene_id "RvY_05109"; transcript_id "RvY_05109.1"; Scaffold002 rebuild transcript 5064603 5067301 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; gene_name "ZFYVE20"; annotation "rabenosyn-5"; Pfam "[Rbsn] Rabenosyn Rab binding domain|[FYVE] FYVE zinc finger"; KO "K12481"; Scaffold002 rebuild exon 5064603 5065293 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; Scaffold002 rebuild exon 5065366 5065436 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; Scaffold002 rebuild exon 5065501 5065778 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; Scaffold002 rebuild exon 5065848 5066009 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; Scaffold002 rebuild exon 5066776 5067039 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; Scaffold002 rebuild exon 5067109 5067301 . - . gene_id "RvY_05110"; transcript_id "RvY_05110.1"; Scaffold002 rebuild transcript 5067504 5067910 . + . gene_id "RvY_05111"; transcript_id "RvY_05111.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5067504 5067593 . + . gene_id "RvY_05111"; transcript_id "RvY_05111.1"; Scaffold002 rebuild exon 5067680 5067910 . + . gene_id "RvY_05111"; transcript_id "RvY_05111.1"; Scaffold002 rebuild transcript 5067504 5067910 . + . gene_id "RvY_05111"; transcript_id "RvY_05111.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5067504 5067593 . + . gene_id "RvY_05111"; transcript_id "RvY_05111.2"; Scaffold002 rebuild exon 5067689 5067910 . + . gene_id "RvY_05111"; transcript_id "RvY_05111.2"; Scaffold002 rebuild transcript 5067729 5067941 . - . gene_id "RvY_05112"; transcript_id "RvY_05112.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5067729 5067941 . - . gene_id "RvY_05112"; transcript_id "RvY_05112.1"; Scaffold002 rebuild transcript 5068014 5071507 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; gene_name "Muskelin_N"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Muskelin_N] Muskelin N-terminus|[Kelch_3] Galactose oxidase, central domain|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "Muskelin N-terminus. This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1."; similar_genes "MKLN1_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 5068014 5068090 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5068170 5068578 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5068641 5068908 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5068969 5069135 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5069236 5069673 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5069737 5069860 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5070544 5070608 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5070700 5070969 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5071028 5071192 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5071253 5071322 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild exon 5071395 5071507 . + . gene_id "RvY_05113"; transcript_id "RvY_05113.1"; Scaffold002 rebuild transcript 5071736 5076926 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; annotation "hypothetical protein."; Pfam "[NUC173]"; KO "K14794"; similar_genes "RRP12_HUMAN(e-value:1.4e-16;bit-score:84.0)"; Scaffold002 rebuild exon 5071736 5071859 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5071945 5072027 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5072106 5072197 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5072266 5072448 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5072542 5074098 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5074425 5074995 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5075058 5075258 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5075327 5075553 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5075686 5075941 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5076150 5076625 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild exon 5076794 5076926 . - . gene_id "RvY_05114"; transcript_id "RvY_05114.1"; Scaffold002 rebuild transcript 5077367 5079779 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; gene_name "KCNJ2"; annotation "potassium inwardly-rectifying channel, subfamily J, member 2"; Pfam "[IRK] Inward rectifier potassium channel"; CDD "Inward rectifier potassium channel."; KO "K04996"; similar_genes "IRK9_MOUSE(e-value:7.5e-22;bit-score:102.0)"; Scaffold002 rebuild exon 5077367 5077680 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5078075 5078263 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5078385 5078423 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5078506 5078575 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5078680 5078805 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5078940 5079159 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5079269 5079420 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild exon 5079498 5079779 . + . gene_id "RvY_05115"; transcript_id "RvY_05115.1"; Scaffold002 rebuild transcript 5080524 5082188 . - . gene_id "RvY_05116"; transcript_id "RvY_05116.1"; annotation "hypothetical protein."; Pfam "[Arm_2] Armadillo-like|[Arm] Armadillo/beta-catenin-like repeat"; Scaffold002 rebuild exon 5080524 5080805 . - . gene_id "RvY_05116"; transcript_id "RvY_05116.1"; Scaffold002 rebuild exon 5080872 5081129 . - . gene_id "RvY_05116"; transcript_id "RvY_05116.1"; Scaffold002 rebuild exon 5081207 5081344 . - . gene_id "RvY_05116"; transcript_id "RvY_05116.1"; Scaffold002 rebuild exon 5081447 5081967 . - . gene_id "RvY_05116"; transcript_id "RvY_05116.1"; Scaffold002 rebuild exon 5082038 5082188 . - . gene_id "RvY_05116"; transcript_id "RvY_05116.1"; Scaffold002 rebuild transcript 5082853 5083947 . + . gene_id "RvY_05117"; transcript_id "RvY_05117.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5082853 5082990 . + . gene_id "RvY_05117"; transcript_id "RvY_05117.1"; Scaffold002 rebuild exon 5083054 5083947 . + . gene_id "RvY_05117"; transcript_id "RvY_05117.1"; Scaffold002 rebuild transcript 5083977 5085440 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; gene_name "DUF2419"; annotation "hypothetical protein."; Pfam "[DUF2419]"; CDD "Protein of unknown function (DUF2419). This is a family of conserved proteins found from plants to humans. The function is not known. A few members are annotated as being cobyrinic acid a,c-diamide synthetase but this could not be confirmed."; similar_genes "U553_NEMVE(e-value:5.5e-18;bit-score:89.0)"; Scaffold002 rebuild exon 5083977 5084135 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; Scaffold002 rebuild exon 5084199 5084452 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; Scaffold002 rebuild exon 5084531 5084654 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; Scaffold002 rebuild exon 5084735 5084881 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; Scaffold002 rebuild exon 5084973 5085117 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; Scaffold002 rebuild exon 5085202 5085440 . - . gene_id "RvY_05118"; transcript_id "RvY_05118.1"; Scaffold002 rebuild transcript 5086115 5086978 . - . gene_id "RvY_05119"; transcript_id "RvY_05119.1"; gene_name "ARF"; annotation "ADP-ribosylation factor 4"; Pfam "[G-alpha] G-protein alpha subunit|[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; CDD "Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs)."; KO "K07977"; similar_genes "ARF4_XENLA(e-value:2.9e-89;bit-score:326.0)"; Scaffold002 rebuild exon 5086115 5086198 . - . gene_id "RvY_05119"; transcript_id "RvY_05119.1"; Scaffold002 rebuild exon 5086268 5086393 . - . gene_id "RvY_05119"; transcript_id "RvY_05119.1"; Scaffold002 rebuild exon 5086469 5086650 . - . gene_id "RvY_05119"; transcript_id "RvY_05119.1"; Scaffold002 rebuild exon 5086755 5086835 . - . gene_id "RvY_05119"; transcript_id "RvY_05119.1"; Scaffold002 rebuild exon 5086912 5086978 . - . gene_id "RvY_05119"; transcript_id "RvY_05119.1"; Scaffold002 rebuild transcript 5087722 5089742 . + . gene_id "RvY_05120"; transcript_id "RvY_05120.1"; gene_name "CARM1"; annotation "Histone-arginine methyltransferase CARM1"; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[PRMT5] PRMT5 arginine-N-methyltransferase|[Methyltransf_31] Methyltransferase domain|[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|[MTS] Methyltransferase small domain"; CDD "S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.)."; EC "EC2.1.1.125"; KO "K05931"; similar_genes "CARM1_XENLA(e-value:2.6e-130;bit-score:462.0)"; Scaffold002 rebuild exon 5087722 5088614 . + . gene_id "RvY_05120"; transcript_id "RvY_05120.1"; Scaffold002 rebuild exon 5088734 5089014 . + . gene_id "RvY_05120"; transcript_id "RvY_05120.1"; Scaffold002 rebuild exon 5089070 5089291 . + . gene_id "RvY_05120"; transcript_id "RvY_05120.1"; Scaffold002 rebuild exon 5089363 5089742 . + . gene_id "RvY_05120"; transcript_id "RvY_05120.1"; Scaffold002 rebuild transcript 5090489 5091886 . - . gene_id "RvY_05121"; transcript_id "RvY_05121.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5090489 5090794 . - . gene_id "RvY_05121"; transcript_id "RvY_05121.1"; Scaffold002 rebuild exon 5091071 5091145 . - . gene_id "RvY_05121"; transcript_id "RvY_05121.1"; Scaffold002 rebuild exon 5091219 5091404 . - . gene_id "RvY_05121"; transcript_id "RvY_05121.1"; Scaffold002 rebuild exon 5091526 5091732 . - . gene_id "RvY_05121"; transcript_id "RvY_05121.1"; Scaffold002 rebuild exon 5091845 5091886 . - . gene_id "RvY_05121"; transcript_id "RvY_05121.1"; Scaffold002 rebuild transcript 5092641 5094194 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5092641 5092992 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild exon 5093079 5093167 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild exon 5093241 5093450 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild exon 5093565 5093583 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild exon 5093665 5093750 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild exon 5093867 5094070 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild exon 5094165 5094194 . + . gene_id "RvY_05122"; transcript_id "RvY_05122.1"; Scaffold002 rebuild transcript 5094446 5095834 . + . gene_id "RvY_05123"; transcript_id "RvY_05123.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5094446 5094758 . + . gene_id "RvY_05123"; transcript_id "RvY_05123.1"; Scaffold002 rebuild exon 5095488 5095555 . + . gene_id "RvY_05123"; transcript_id "RvY_05123.1"; Scaffold002 rebuild exon 5095619 5095834 . + . gene_id "RvY_05123"; transcript_id "RvY_05123.1"; Scaffold002 rebuild transcript 5095969 5097596 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; gene_name "K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; KO "K01025"; Scaffold002 rebuild exon 5095969 5096087 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5096180 5096269 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5096356 5096449 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5096533 5096618 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5096685 5096820 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5096883 5097118 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5097190 5097302 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild exon 5097427 5097596 . - . gene_id "RvY_05124"; transcript_id "RvY_05124.1"; Scaffold002 rebuild transcript 5097900 5100428 . - . gene_id "RvY_05125"; transcript_id "RvY_05125.1"; gene_name "Mic1"; annotation "hypothetical protein."; Pfam "[Mic1] Colon cancer-associated protein Mic1-like"; CDD "Colon cancer-associated protein Mic1-like. This family represents the C-terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1."; similar_genes "MIC1_MOUSE(e-value:1.3e-08;bit-score:58.0)"; Scaffold002 rebuild exon 5097900 5098208 . - . gene_id "RvY_05125"; transcript_id "RvY_05125.1"; Scaffold002 rebuild exon 5098272 5098909 . - . gene_id "RvY_05125"; transcript_id "RvY_05125.1"; Scaffold002 rebuild exon 5099005 5099131 . - . gene_id "RvY_05125"; transcript_id "RvY_05125.1"; Scaffold002 rebuild exon 5099209 5099418 . - . gene_id "RvY_05125"; transcript_id "RvY_05125.1"; Scaffold002 rebuild exon 5099490 5100428 . - . gene_id "RvY_05125"; transcript_id "RvY_05125.1"; Scaffold002 rebuild transcript 5100840 5101004 . - . gene_id "RvY_05126"; transcript_id "RvY_05126.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5100840 5101004 . - . gene_id "RvY_05126"; transcript_id "RvY_05126.1"; Scaffold002 rebuild transcript 5101006 5102929 . + . gene_id "RvY_05127"; transcript_id "RvY_05127.1"; annotation "hypothetical protein."; Pfam "[PDCD9] Mitochondrial 28S ribosomal protein S30 (PDCD9)"; Scaffold002 rebuild exon 5101006 5101610 . + . gene_id "RvY_05127"; transcript_id "RvY_05127.1"; Scaffold002 rebuild exon 5101691 5101997 . + . gene_id "RvY_05127"; transcript_id "RvY_05127.1"; Scaffold002 rebuild exon 5102062 5102185 . + . gene_id "RvY_05127"; transcript_id "RvY_05127.1"; Scaffold002 rebuild exon 5102290 5102457 . + . gene_id "RvY_05127"; transcript_id "RvY_05127.1"; Scaffold002 rebuild exon 5102529 5102929 . + . gene_id "RvY_05127"; transcript_id "RvY_05127.1"; Scaffold002 rebuild transcript 5103547 5105952 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; gene_name "(1)CNGF(3)CAP_ED"; annotation "(1,3)putative Cyclic nucleotide-gated cation channel(2)hypothetical protein."; Pfam "(1,3)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1,3)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K05391"; similar_genes "(1,3)CNG_CAEEL(e-value:1.4e-35;bit-score:147.0)"; Scaffold002 rebuild exon 5103547 5103825 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild exon 5103924 5104142 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild exon 5104311 5104700 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild exon 5104946 5105196 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild exon 5105320 5105537 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild exon 5105642 5105796 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild exon 5105860 5105952 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.1"; Scaffold002 rebuild transcript 5103846 5105952 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; gene_name "(1)CNGF(3)CAP_ED"; annotation "(1,3)putative Cyclic nucleotide-gated cation channel(2)hypothetical protein."; Pfam "(1,3)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1,3)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K05391"; similar_genes "(1,3)CNG_CAEEL(e-value:1.4e-35;bit-score:147.0)"; Scaffold002 rebuild exon 5103846 5104142 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; Scaffold002 rebuild exon 5104311 5104700 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; Scaffold002 rebuild exon 5104946 5105196 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; Scaffold002 rebuild exon 5105320 5105537 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; Scaffold002 rebuild exon 5105642 5105796 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; Scaffold002 rebuild exon 5105860 5105952 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.2"; Scaffold002 rebuild transcript 5103547 5105341 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.3"; gene_name "(1)CNGF(3)CAP_ED"; annotation "(1,3)putative Cyclic nucleotide-gated cation channel(2)hypothetical protein."; Pfam "(1,3)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1,3)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K05391"; similar_genes "(1,3)CNG_CAEEL(e-value:1.4e-35;bit-score:147.0)"; Scaffold002 rebuild exon 5103547 5103825 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.3"; Scaffold002 rebuild exon 5103924 5104142 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.3"; Scaffold002 rebuild exon 5104311 5104700 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.3"; Scaffold002 rebuild exon 5104946 5105196 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.3"; Scaffold002 rebuild exon 5105320 5105341 . - . gene_id "RvY_05128"; transcript_id "RvY_05128.3"; Scaffold002 rebuild transcript 5107178 5111633 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; gene_name "CNGF"; annotation "Cyclic nucleotide-gated cation channel alpha-3"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; KO "K05391"; similar_genes "CNGA3_HUMAN(e-value:2.6e-62;bit-score:236.0)"; Scaffold002 rebuild exon 5107178 5107726 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild exon 5107845 5108063 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild exon 5108143 5108699 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild exon 5108844 5109777 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild exon 5110796 5111046 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild exon 5111232 5111446 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild exon 5111530 5111633 . - . gene_id "RvY_05129"; transcript_id "RvY_05129.1"; Scaffold002 rebuild transcript 5113819 5115543 . - . gene_id "RvY_05130"; transcript_id "RvY_05130.1"; gene_name "PRK08853"; annotation "hypothetical protein."; Pfam "[WASH_WAHD] WAHD domain of WASH complex"; CDD "DNA polymerase III subunits gamma and tau; Validated"; similar_genes "WASH1_XENTR(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 5113819 5114051 . - . gene_id "RvY_05130"; transcript_id "RvY_05130.1"; Scaffold002 rebuild exon 5114118 5114621 . - . gene_id "RvY_05130"; transcript_id "RvY_05130.1"; Scaffold002 rebuild exon 5114721 5115285 . - . gene_id "RvY_05130"; transcript_id "RvY_05130.1"; Scaffold002 rebuild exon 5115382 5115543 . - . gene_id "RvY_05130"; transcript_id "RvY_05130.1"; Scaffold002 rebuild transcript 5116256 5118023 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; gene_name "CSK"; annotation "putative Tyrosine-protein kinase CSK"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[SH2]"; CDD "Catalytic Domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression."; EC "EC2.7.10.2"; KO "K05728"; similar_genes "CSK_RAT(e-value:9.2e-31;bit-score:131.0)"; Scaffold002 rebuild exon 5116256 5116368 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5116425 5116644 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5116734 5116902 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5116972 5117071 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5117160 5117321 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5117427 5117628 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5117700 5117807 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild exon 5117868 5118023 . + . gene_id "RvY_05131"; transcript_id "RvY_05131.1"; Scaffold002 rebuild transcript 5118577 5119626 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 5118577 5118665 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; Scaffold002 rebuild exon 5118735 5118984 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; Scaffold002 rebuild exon 5119070 5119123 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; Scaffold002 rebuild exon 5119191 5119241 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; Scaffold002 rebuild exon 5119314 5119535 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; Scaffold002 rebuild exon 5119603 5119626 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.1"; Scaffold002 rebuild transcript 5118335 5118942 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 5118335 5118515 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.2"; Scaffold002 rebuild exon 5118581 5118665 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.2"; Scaffold002 rebuild exon 5118735 5118942 . - . gene_id "RvY_05132"; transcript_id "RvY_05132.2"; Scaffold002 rebuild transcript 5118617 5118919 . + . gene_id "RvY_05133"; transcript_id "RvY_05133.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5118617 5118919 . + . gene_id "RvY_05133"; transcript_id "RvY_05133.1"; Scaffold002 rebuild transcript 5120808 5121847 . - . gene_id "RvY_05134"; transcript_id "RvY_05134.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5120808 5121007 . - . gene_id "RvY_05134"; transcript_id "RvY_05134.1"; Scaffold002 rebuild exon 5121071 5121281 . - . gene_id "RvY_05134"; transcript_id "RvY_05134.1"; Scaffold002 rebuild exon 5121404 5121453 . - . gene_id "RvY_05134"; transcript_id "RvY_05134.1"; Scaffold002 rebuild exon 5121592 5121678 . - . gene_id "RvY_05134"; transcript_id "RvY_05134.1"; Scaffold002 rebuild exon 5121757 5121847 . - . gene_id "RvY_05134"; transcript_id "RvY_05134.1"; Scaffold002 rebuild transcript 5123148 5123678 . - . gene_id "RvY_05135"; transcript_id "RvY_05135.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5123148 5123164 . - . gene_id "RvY_05135"; transcript_id "RvY_05135.1"; Scaffold002 rebuild exon 5123261 5123370 . - . gene_id "RvY_05135"; transcript_id "RvY_05135.1"; Scaffold002 rebuild exon 5123446 5123678 . - . gene_id "RvY_05135"; transcript_id "RvY_05135.1"; Scaffold002 rebuild transcript 5126771 5127843 . + . gene_id "RvY_05136"; transcript_id "RvY_05136.1"; gene_name "PTH2"; annotation "peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]"; Pfam "[PTH2] Peptidyl-tRNA hydrolase PTH2"; EC "EC3.1.1.29"; KO "K04794"; similar_genes "PTH2_HUMAN(e-value:9.4e-16;bit-score:81.0)"; Scaffold002 rebuild exon 5126771 5126939 . + . gene_id "RvY_05136"; transcript_id "RvY_05136.1"; Scaffold002 rebuild exon 5127124 5127248 . + . gene_id "RvY_05136"; transcript_id "RvY_05136.1"; Scaffold002 rebuild exon 5127439 5127843 . + . gene_id "RvY_05136"; transcript_id "RvY_05136.1"; Scaffold002 rebuild transcript 5128355 5129242 . + . gene_id "RvY_05137"; transcript_id "RvY_05137.1"; gene_name "DSPc"; annotation "hypothetical protein."; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K14165"; similar_genes "PTPM1_DROME(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 5128355 5129088 . + . gene_id "RvY_05137"; transcript_id "RvY_05137.1"; Scaffold002 rebuild exon 5129164 5129242 . + . gene_id "RvY_05137"; transcript_id "RvY_05137.1"; Scaffold002 rebuild transcript 5129998 5132024 . + . gene_id "RvY_05138"; transcript_id "RvY_05138.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5129998 5130077 . + . gene_id "RvY_05138"; transcript_id "RvY_05138.1"; Scaffold002 rebuild exon 5131961 5132024 . + . gene_id "RvY_05138"; transcript_id "RvY_05138.1"; Scaffold002 rebuild transcript 5135113 5135499 . + . gene_id "RvY_05139"; transcript_id "RvY_05139.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5135113 5135499 . + . gene_id "RvY_05139"; transcript_id "RvY_05139.1"; Scaffold002 rebuild transcript 5140151 5145239 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; gene_name "IQSEC"; annotation "IQ motif and SEC7 domain-containing protein"; Pfam "[Sec7]"; CDD "Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity."; KO "K12495"; similar_genes "IQEC1_HUMAN(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 5140151 5140212 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5141986 5142368 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5142639 5143485 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5143564 5143840 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5143914 5144234 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5144353 5144700 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5144764 5144989 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild exon 5145055 5145239 . + . gene_id "RvY_05140"; transcript_id "RvY_05140.1"; Scaffold002 rebuild transcript 5146903 5154423 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; gene_name "JARID1"; annotation "Lysine-specific demethylase lid"; Pfam "[JmjC] JmjC domain, hydroxylase|[ARID] ARID/BRIGHT DNA binding domain|[JmjN] jmjN domain|[PLU-1] PLU-1-like protein|[zf-C5HC2] C5HC2 zinc finger|[PHD] PHD-finger"; EC "EC1.14.11.-"; KO "K11446"; similar_genes "KDM5_DROME(e-value:6.3e-70;bit-score:261.0)"; Scaffold002 rebuild exon 5146903 5147058 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5147195 5147272 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5147336 5147395 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5147504 5147758 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5147846 5148109 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5148203 5148358 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5148428 5148847 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5149029 5149355 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5149865 5150244 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5150314 5150435 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5150504 5150799 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5150860 5151012 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5151086 5151294 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5151368 5151506 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5151762 5152157 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5152216 5152417 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5152729 5153043 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5153109 5153301 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5153511 5153863 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5153928 5154059 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5154127 5154233 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild exon 5154298 5154423 . + . gene_id "RvY_05141"; transcript_id "RvY_05141.1"; Scaffold002 rebuild transcript 5155271 5161707 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; gene_name "PRK12323"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Provisional"; Scaffold002 rebuild exon 5155271 5156239 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5156299 5156831 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5157168 5157687 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5157982 5158577 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5158768 5159121 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5159184 5159532 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5159692 5160137 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5160302 5160647 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5160923 5161054 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5161132 5161291 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5161378 5161457 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild exon 5161522 5161707 . - . gene_id "RvY_05142"; transcript_id "RvY_05142.1"; Scaffold002 rebuild transcript 5162803 5165055 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; gene_name "TIP60"; annotation "Histone acetyltransferase Tip60"; Pfam "[MOZ_SAS] MOZ/SAS family|[Tudor-knot] RNA binding activity-knot of a chromodomain"; CDD "Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]"; EC "EC2.3.1.48"; KO "K11304"; similar_genes "TIP60_DROME(e-value:4.2e-86;bit-score:315.0)"; Scaffold002 rebuild exon 5162803 5163253 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; Scaffold002 rebuild exon 5163327 5163484 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; Scaffold002 rebuild exon 5163545 5163683 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; Scaffold002 rebuild exon 5163899 5164425 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; Scaffold002 rebuild exon 5164498 5164760 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; Scaffold002 rebuild exon 5164842 5165055 . + . gene_id "RvY_05143"; transcript_id "RvY_05143.1"; Scaffold002 rebuild transcript 5165848 5173592 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.1"; gene_name "FLI1"; annotation "putative Transcriptional regulator ERG"; Pfam "[Ets] Ets-domain"; KO "K09436"; similar_genes "ERG_HUMAN(e-value:4.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 5165848 5166215 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.1"; Scaffold002 rebuild exon 5166343 5167038 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.1"; Scaffold002 rebuild exon 5168075 5168206 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.1"; Scaffold002 rebuild exon 5173363 5173494 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.1"; Scaffold002 rebuild exon 5173562 5173592 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.1"; Scaffold002 rebuild transcript 5165848 5168330 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.2"; gene_name "FLI1"; annotation "putative Transcriptional regulator ERG"; Pfam "[Ets] Ets-domain"; KO "K09436"; similar_genes "ERG_HUMAN(e-value:4.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 5165848 5166215 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.2"; Scaffold002 rebuild exon 5166343 5167038 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.2"; Scaffold002 rebuild exon 5168075 5168206 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.2"; Scaffold002 rebuild exon 5168309 5168330 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.2"; Scaffold002 rebuild transcript 5165848 5167021 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.3"; gene_name "FLI1"; annotation "putative Transcriptional regulator ERG"; Pfam "[Ets] Ets-domain"; KO "K09436"; similar_genes "ERG_HUMAN(e-value:4.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 5165848 5166215 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.3"; Scaffold002 rebuild exon 5166343 5167021 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.3"; Scaffold002 rebuild transcript 5166338 5167021 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.4"; gene_name "FLI1"; annotation "putative Transcriptional regulator ERG"; Pfam "[Ets] Ets-domain"; KO "K09436"; similar_genes "ERG_HUMAN(e-value:4.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 5166338 5167021 . - . gene_id "RvY_05144"; transcript_id "RvY_05144.4"; Scaffold002 rebuild transcript 5175646 5175825 . + . gene_id "RvY_05145"; transcript_id "RvY_05145.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5175646 5175825 . + . gene_id "RvY_05145"; transcript_id "RvY_05145.1"; Scaffold002 rebuild transcript 5176309 5176506 . - . gene_id "RvY_05146"; transcript_id "RvY_05146.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5176309 5176506 . - . gene_id "RvY_05146"; transcript_id "RvY_05146.1"; Scaffold002 rebuild transcript 5177348 5177551 . + . gene_id "RvY_05147"; transcript_id "RvY_05147.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5177348 5177551 . + . gene_id "RvY_05147"; transcript_id "RvY_05147.1"; Scaffold002 rebuild transcript 5178023 5181752 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5178023 5178295 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5179214 5179442 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5179529 5180057 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5180161 5180420 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5180527 5180759 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5180830 5180862 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5180945 5181118 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5181220 5181264 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5181424 5181492 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild exon 5181642 5181752 . - . gene_id "RvY_05148"; transcript_id "RvY_05148.1"; Scaffold002 rebuild transcript 5184144 5185688 . + . gene_id "RvY_05149"; transcript_id "RvY_05149.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5184144 5184267 . + . gene_id "RvY_05149"; transcript_id "RvY_05149.1"; Scaffold002 rebuild exon 5184327 5184625 . + . gene_id "RvY_05149"; transcript_id "RvY_05149.1"; Scaffold002 rebuild exon 5184728 5184930 . + . gene_id "RvY_05149"; transcript_id "RvY_05149.1"; Scaffold002 rebuild exon 5185029 5185468 . + . gene_id "RvY_05149"; transcript_id "RvY_05149.1"; Scaffold002 rebuild exon 5185522 5185688 . + . gene_id "RvY_05149"; transcript_id "RvY_05149.1"; Scaffold002 rebuild transcript 5188055 5188858 . + . gene_id "RvY_05150"; transcript_id "RvY_05150.1"; gene_name "Egl_like_exo"; annotation "hypothetical protein."; Pfam "[DNA_pol_A_exo1] 3'-5' exonuclease"; CDD "The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the Scaffold002 rebuild exon 5188055 5188858 . + . gene_id "RvY_05150"; transcript_id "RvY_05150.1"; Scaffold002 rebuild transcript 5188055 5188889 . + . gene_id "RvY_05150"; transcript_id "RvY_05150.2"; gene_name "Egl_like_exo"; annotation "hypothetical protein."; Pfam "[DNA_pol_A_exo1] 3'-5' exonuclease"; CDD "The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the Scaffold002 rebuild exon 5188055 5188765 . + . gene_id "RvY_05150"; transcript_id "RvY_05150.2"; Scaffold002 rebuild exon 5188836 5188889 . + . gene_id "RvY_05150"; transcript_id "RvY_05150.2"; Scaffold002 rebuild transcript 5189319 5190115 . - . gene_id "RvY_05151"; transcript_id "RvY_05151.1"; annotation "hypothetical protein."; Pfam "[L51_S25_CI-B8] Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain"; Scaffold002 rebuild exon 5189319 5189716 . - . gene_id "RvY_05151"; transcript_id "RvY_05151.1"; Scaffold002 rebuild exon 5189796 5189902 . - . gene_id "RvY_05151"; transcript_id "RvY_05151.1"; Scaffold002 rebuild exon 5189988 5190115 . - . gene_id "RvY_05151"; transcript_id "RvY_05151.1"; Scaffold002 rebuild transcript 5190772 5193492 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; gene_name "Nucleostemin_like"; annotation "putative Guanine nucleotide-binding protein-like 3 homolog"; Pfam "[FeoB_N] Ferrous iron transport protein B|[GN3L_Grn1] GNL3L/Grn1 putative GTPase|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein."; KO "K14538"; similar_genes "GNL3_DICDI(e-value:1.2e-28;bit-score:124.0)"; Scaffold002 rebuild exon 5190772 5190793 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5190894 5190946 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5191054 5191108 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5191220 5191302 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5191386 5191589 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5191649 5191784 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5191872 5191975 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5192056 5192200 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5192319 5192406 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5192486 5192597 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5192661 5192869 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5192965 5193359 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild exon 5193440 5193492 . + . gene_id "RvY_05152"; transcript_id "RvY_05152.1"; Scaffold002 rebuild transcript 5193643 5194719 . - . gene_id "RvY_05153"; transcript_id "RvY_05153.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5193643 5193846 . - . gene_id "RvY_05153"; transcript_id "RvY_05153.1"; Scaffold002 rebuild exon 5193902 5194067 . - . gene_id "RvY_05153"; transcript_id "RvY_05153.1"; Scaffold002 rebuild exon 5194141 5194536 . - . gene_id "RvY_05153"; transcript_id "RvY_05153.1"; Scaffold002 rebuild exon 5194622 5194719 . - . gene_id "RvY_05153"; transcript_id "RvY_05153.1"; Scaffold002 rebuild transcript 5195210 5195697 . + . gene_id "RvY_05154"; transcript_id "RvY_05154.1"; annotation "hypothetical protein."; Pfam "[Oxidored-like] Oxidoreductase-like protein, N-terminal"; Scaffold002 rebuild exon 5195210 5195417 . + . gene_id "RvY_05154"; transcript_id "RvY_05154.1"; Scaffold002 rebuild exon 5195495 5195697 . + . gene_id "RvY_05154"; transcript_id "RvY_05154.1"; Scaffold002 rebuild transcript 5195746 5197242 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; gene_name "RASSF1"; annotation "Ras association domain-containing protein 1"; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)"; CDD "RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational."; KO "K09850"; Scaffold002 rebuild exon 5195746 5196079 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild exon 5196148 5196389 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild exon 5196454 5196545 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild exon 5196630 5196702 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild exon 5196765 5196834 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild exon 5196889 5197013 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild exon 5197093 5197242 . + . gene_id "RvY_05155"; transcript_id "RvY_05155.1"; Scaffold002 rebuild transcript 5197522 5199567 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold002 rebuild exon 5197522 5197707 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5197790 5197861 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5197941 5198004 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5198073 5198241 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5198329 5198454 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5198523 5198704 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5198769 5198903 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5198968 5199003 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5199073 5199223 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5199291 5199333 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild exon 5199535 5199567 . - . gene_id "RvY_05156"; transcript_id "RvY_05156.1"; Scaffold002 rebuild transcript 5200710 5202030 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5200710 5200732 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.1"; Scaffold002 rebuild exon 5200825 5201227 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.1"; Scaffold002 rebuild exon 5201347 5201601 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.1"; Scaffold002 rebuild exon 5201662 5201772 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.1"; Scaffold002 rebuild exon 5201854 5202030 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.1"; Scaffold002 rebuild transcript 5201060 5202194 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5201060 5201227 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.2"; Scaffold002 rebuild exon 5201347 5201601 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.2"; Scaffold002 rebuild exon 5201662 5201772 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.2"; Scaffold002 rebuild exon 5201854 5201991 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.2"; Scaffold002 rebuild exon 5202054 5202194 . + . gene_id "RvY_05157"; transcript_id "RvY_05157.2"; Scaffold002 rebuild transcript 5202448 5202837 . - . gene_id "RvY_05158"; transcript_id "RvY_05158.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5202448 5202837 . - . gene_id "RvY_05158"; transcript_id "RvY_05158.1"; Scaffold002 rebuild transcript 5202695 5204501 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; gene_name "ADCK"; annotation "Chaperone activity of bc1 complex-like, mitochondrial"; Pfam "[ABC1] ABC1 family"; CDD "Predicted unusual protein kinase [General function prediction only]"; KO "K08869"; similar_genes "ADCK3_BOVIN(e-value:4.9e-55;bit-score:212.0)"; Scaffold002 rebuild exon 5202695 5202707 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5202777 5202902 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5202999 5203084 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5203187 5203503 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5203568 5203709 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5203808 5203915 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5204003 5204155 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild exon 5204217 5204501 . + . gene_id "RvY_05159"; transcript_id "RvY_05159.1"; Scaffold002 rebuild transcript 5204633 5207261 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; gene_name "CTSF"; annotation "putative Cathepsin F"; Pfam "[Peptidase_C1] Papain family cysteine protease|[Inhibitor_I29] Cathepsin propeptide inhibitor domain (I29)"; EC "EC3.4.22.41"; KO "K01373"; similar_genes "CATF_MOUSE(e-value:1.8e-33;bit-score:140.0)"; Scaffold002 rebuild exon 5204633 5204732 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5204791 5204827 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5204930 5204988 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205085 5205116 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205196 5205260 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205339 5205382 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205498 5205612 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205676 5205717 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205782 5205878 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5205965 5205989 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5206069 5206201 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5206292 5206405 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5206488 5206584 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5206652 5206807 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild exon 5206878 5207261 . - . gene_id "RvY_05160"; transcript_id "RvY_05160.1"; Scaffold002 rebuild transcript 5207709 5210086 . - . gene_id "RvY_05161"; transcript_id "RvY_05161.1"; gene_name "PPWD1"; annotation "Peptidylprolyl isomerase domain and WD repeat-containing protein 1"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD|[WD40] WD domain, G-beta repeat"; CDD "cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known."; EC "EC5.2.1.8"; KO "K12736"; similar_genes "PPWD1_BOVIN(e-value:6.6e-127;bit-score:451.0)"; Scaffold002 rebuild exon 5207709 5208013 . - . gene_id "RvY_05161"; transcript_id "RvY_05161.1"; Scaffold002 rebuild exon 5208075 5208581 . - . gene_id "RvY_05161"; transcript_id "RvY_05161.1"; Scaffold002 rebuild exon 5208733 5209178 . - . gene_id "RvY_05161"; transcript_id "RvY_05161.1"; Scaffold002 rebuild exon 5209330 5209667 . - . gene_id "RvY_05161"; transcript_id "RvY_05161.1"; Scaffold002 rebuild exon 5209778 5210086 . - . gene_id "RvY_05161"; transcript_id "RvY_05161.1"; Scaffold002 rebuild transcript 5211048 5211490 . + . gene_id "RvY_05162"; transcript_id "RvY_05162.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5211048 5211267 . + . gene_id "RvY_05162"; transcript_id "RvY_05162.1"; Scaffold002 rebuild exon 5211348 5211490 . + . gene_id "RvY_05162"; transcript_id "RvY_05162.1"; Scaffold002 rebuild transcript 5211911 5213358 . + . gene_id "RvY_05163"; transcript_id "RvY_05163.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5211911 5212700 . + . gene_id "RvY_05163"; transcript_id "RvY_05163.1"; Scaffold002 rebuild exon 5212763 5213358 . + . gene_id "RvY_05163"; transcript_id "RvY_05163.1"; Scaffold002 rebuild transcript 5214036 5217053 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; gene_name "M2_ACE"; annotation "hypothetical protein."; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold002 rebuild exon 5214036 5214407 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5214510 5214787 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5214858 5214975 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5215033 5215196 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5215304 5215375 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5215451 5215583 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5215654 5216080 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5216155 5216267 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5216327 5216426 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5216492 5216759 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5216828 5216978 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild exon 5217048 5217053 . + . gene_id "RvY_05164"; transcript_id "RvY_05164.1"; Scaffold002 rebuild transcript 5217118 5218293 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; gene_name "M2_ACE"; annotation "putative Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold002 rebuild exon 5217118 5217118 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild exon 5217197 5217292 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild exon 5217364 5217508 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild exon 5217585 5217683 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild exon 5217749 5217871 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild exon 5217951 5218126 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild exon 5218226 5218293 . + . gene_id "RvY_05165"; transcript_id "RvY_05165.1"; Scaffold002 rebuild transcript 5219257 5221394 . + . gene_id "RvY_05166"; transcript_id "RvY_05166.1"; gene_name "TBL1"; annotation "F-box-like/WD repeat-containing protein TBL1XR1-B"; Pfam "[Apc4_WD40] Anaphase-promoting complex subunit 4 WD40 domain|[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A|[LisH]"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K04508"; similar_genes "TB1RB_XENLA(e-value:9.0e-133;bit-score:470.0)"; Scaffold002 rebuild exon 5219257 5219808 . + . gene_id "RvY_05166"; transcript_id "RvY_05166.1"; Scaffold002 rebuild exon 5220021 5220219 . + . gene_id "RvY_05166"; transcript_id "RvY_05166.1"; Scaffold002 rebuild exon 5220451 5220803 . + . gene_id "RvY_05166"; transcript_id "RvY_05166.1"; Scaffold002 rebuild exon 5220862 5221047 . + . gene_id "RvY_05166"; transcript_id "RvY_05166.1"; Scaffold002 rebuild exon 5221113 5221394 . + . gene_id "RvY_05166"; transcript_id "RvY_05166.1"; Scaffold002 rebuild transcript 5221615 5223942 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; gene_name "CDC48"; annotation "Spermatogenesis-associated protein 5"; Pfam "[Arch_ATPase] Archaeal ATPase|[AAA_14] AAA domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[AAA_22] AAA domain|[IstB_IS21] IstB-like ATP binding protein|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_17] AAA domain|[AAA_2] AAA domain (Cdc48 subfamily)"; CDD "AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus."; KO "K14575"; similar_genes "SPAT5_HUMAN(e-value:2.2e-93;bit-score:339.0)"; Scaffold002 rebuild exon 5221615 5221797 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5221875 5222107 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5222203 5222394 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5222480 5222690 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5222766 5222943 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5223006 5223152 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5223240 5223354 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild exon 5223435 5223942 . - . gene_id "RvY_05167"; transcript_id "RvY_05167.1"; Scaffold002 rebuild transcript 5224684 5225136 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 5224684 5225136 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.1"; Scaffold002 rebuild transcript 5225260 5225890 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.2"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 5225260 5225410 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.2"; Scaffold002 rebuild exon 5225634 5225890 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.2"; Scaffold002 rebuild transcript 5225087 5225639 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.3"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 5225087 5225410 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.3"; Scaffold002 rebuild exon 5225634 5225639 . + . gene_id "RvY_05168"; transcript_id "RvY_05168.3"; Scaffold002 rebuild transcript 5226247 5227293 . - . gene_id "RvY_05169"; transcript_id "RvY_05169.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5226247 5226551 . - . gene_id "RvY_05169"; transcript_id "RvY_05169.1"; Scaffold002 rebuild exon 5226775 5227078 . - . gene_id "RvY_05169"; transcript_id "RvY_05169.1"; Scaffold002 rebuild exon 5227144 5227293 . - . gene_id "RvY_05169"; transcript_id "RvY_05169.1"; Scaffold002 rebuild transcript 5227547 5229374 . + . gene_id "RvY_05170"; transcript_id "RvY_05170.1"; gene_name "GlpK"; annotation "hypothetical protein."; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain|[FGGY_C] FGGY family of carbohydrate kinases, C-terminal domain"; CDD "Glycerol kinase [Energy production and conversion]"; Scaffold002 rebuild exon 5227547 5228495 . + . gene_id "RvY_05170"; transcript_id "RvY_05170.1"; Scaffold002 rebuild exon 5228593 5229374 . + . gene_id "RvY_05170"; transcript_id "RvY_05170.1"; Scaffold002 rebuild transcript 5229815 5233756 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; gene_name "SMC_prok_A"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent."; Scaffold002 rebuild exon 5229815 5229964 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5230040 5230173 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5230257 5230330 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5230420 5230478 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5230611 5230680 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5230760 5230821 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5230977 5231085 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5231192 5231286 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5231376 5231560 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5231709 5231776 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5231859 5231920 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5232008 5232115 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5232175 5232333 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5232436 5232555 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5232654 5232746 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5232820 5232888 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5233006 5233077 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5233215 5233280 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5233354 5233530 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild exon 5233589 5233756 . + . gene_id "RvY_05171"; transcript_id "RvY_05171.1"; Scaffold002 rebuild transcript 5238974 5239989 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.1"; gene_name "(1,2)CYCc"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2,3)hypothetical protein."; Pfam "(1)[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:1.3e-38;bit-score:157.0)(2)ANPRA_HUMAN(e-value:2.0e-24;bit-score:110.0)(3)ANPRA_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 5238974 5239147 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.1"; Scaffold002 rebuild exon 5239231 5239258 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.1"; Scaffold002 rebuild exon 5239328 5239415 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.1"; Scaffold002 rebuild exon 5239495 5239687 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.1"; Scaffold002 rebuild exon 5239756 5239989 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.1"; Scaffold002 rebuild transcript 5239366 5239958 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.2"; gene_name "(1,2)CYCc"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2,3)hypothetical protein."; Pfam "(1)[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:1.3e-38;bit-score:157.0)(2)ANPRA_HUMAN(e-value:2.0e-24;bit-score:110.0)(3)ANPRA_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 5239366 5239415 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.2"; Scaffold002 rebuild exon 5239495 5239782 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.2"; Scaffold002 rebuild exon 5239883 5239958 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.2"; Scaffold002 rebuild transcript 5239940 5240350 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.3"; gene_name "(1,2)CYCc"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2,3)hypothetical protein."; Pfam "(1)[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:1.3e-38;bit-score:157.0)(2)ANPRA_HUMAN(e-value:2.0e-24;bit-score:110.0)(3)ANPRA_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold002 rebuild exon 5239940 5240350 . + . gene_id "RvY_05172"; transcript_id "RvY_05172.3"; Scaffold002 rebuild transcript 5240619 5241176 . - . gene_id "RvY_05173"; transcript_id "RvY_05173.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5240619 5241176 . - . gene_id "RvY_05173"; transcript_id "RvY_05173.1"; Scaffold002 rebuild transcript 5241031 5241492 . - . gene_id "RvY_05173"; transcript_id "RvY_05173.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5241031 5241492 . - . gene_id "RvY_05173"; transcript_id "RvY_05173.2"; Scaffold002 rebuild transcript 5241501 5243347 . + . gene_id "RvY_05174"; transcript_id "RvY_05174.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5241501 5241729 . + . gene_id "RvY_05174"; transcript_id "RvY_05174.1"; Scaffold002 rebuild exon 5243277 5243347 . + . gene_id "RvY_05174"; transcript_id "RvY_05174.1"; Scaffold002 rebuild transcript 5241509 5241757 . - . gene_id "RvY_05175"; transcript_id "RvY_05175.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5241509 5241757 . - . gene_id "RvY_05175"; transcript_id "RvY_05175.1"; Scaffold002 rebuild transcript 5243504 5245494 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5243504 5243674 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5243749 5243787 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5243853 5243948 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5244051 5244137 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5244230 5244656 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5244712 5245026 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5245108 5245349 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild exon 5245441 5245494 . + . gene_id "RvY_05176"; transcript_id "RvY_05176.1"; Scaffold002 rebuild transcript 5245967 5247534 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; annotation "putative Putative E3 ubiquitin-protein ligase makorin-4"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; EC "EC6.3.2.-"; KO "K15687"; similar_genes "MKRN4_HUMAN(e-value:2.4e-31;bit-score:133.0)"; Scaffold002 rebuild exon 5245967 5246169 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild exon 5246239 5246339 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild exon 5246402 5246512 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild exon 5246595 5246815 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild exon 5246882 5247117 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild exon 5247190 5247329 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild exon 5247383 5247534 . - . gene_id "RvY_05177"; transcript_id "RvY_05177.1"; Scaffold002 rebuild transcript 5248057 5248767 . + . gene_id "RvY_05178"; transcript_id "RvY_05178.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5248057 5248403 . + . gene_id "RvY_05178"; transcript_id "RvY_05178.1"; Scaffold002 rebuild exon 5248758 5248767 . + . gene_id "RvY_05178"; transcript_id "RvY_05178.1"; Scaffold002 rebuild transcript 5248785 5251214 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; gene_name "GDI"; annotation "Rab GDP dissociation inhibitor beta"; Pfam "[GDI] GDP dissociation inhibitor"; CDD "GDP dissociation inhibitor."; similar_genes "GDIB_BOVIN(e-value:5.5e-156;bit-score:547.0)"; Scaffold002 rebuild exon 5248785 5248829 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5248925 5249032 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5249150 5249246 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5249316 5249450 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5249522 5249720 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5249801 5249932 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5250012 5250180 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5250258 5250360 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5250750 5250894 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild exon 5251022 5251214 . + . gene_id "RvY_05179"; transcript_id "RvY_05179.1"; Scaffold002 rebuild transcript 5251444 5251782 . + . gene_id "RvY_05180"; transcript_id "RvY_05180.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5251444 5251782 . + . gene_id "RvY_05180"; transcript_id "RvY_05180.1"; Scaffold002 rebuild transcript 5251818 5252456 . - . gene_id "RvY_05181"; transcript_id "RvY_05181.1"; gene_name "QCR6"; annotation "ubiquinol-cytochrome c reductase subunit 6 [EC:1.10.2.2]"; Pfam "[UCR_hinge] Ubiquinol-cytochrome C reductase hinge protein"; EC "EC1.10.2.2"; KO "K00416"; Scaffold002 rebuild exon 5251818 5251850 . - . gene_id "RvY_05181"; transcript_id "RvY_05181.1"; Scaffold002 rebuild exon 5251970 5252131 . - . gene_id "RvY_05181"; transcript_id "RvY_05181.1"; Scaffold002 rebuild exon 5252220 5252267 . - . gene_id "RvY_05181"; transcript_id "RvY_05181.1"; Scaffold002 rebuild exon 5252433 5252456 . - . gene_id "RvY_05181"; transcript_id "RvY_05181.1"; Scaffold002 rebuild transcript 5253152 5259119 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; gene_name "BUB1"; annotation "checkpoint serine/threonine-protein kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Mad3_BUB1_I] Mad3/BUB1 homology region 1"; CDD "Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p."; EC "EC2.7.11.1"; KO "K02178"; Scaffold002 rebuild exon 5253152 5253553 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5253618 5253924 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5253988 5254295 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5254437 5255204 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5255308 5255649 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5255781 5256056 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5256172 5256619 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5256698 5257390 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5257464 5258029 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild exon 5258280 5259119 . + . gene_id "RvY_05182"; transcript_id "RvY_05182.1"; Scaffold002 rebuild transcript 5259262 5261074 . - . gene_id "RvY_05183"; transcript_id "RvY_05183.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5259262 5259648 . - . gene_id "RvY_05183"; transcript_id "RvY_05183.1"; Scaffold002 rebuild exon 5260032 5260432 . - . gene_id "RvY_05183"; transcript_id "RvY_05183.1"; Scaffold002 rebuild exon 5260525 5261074 . - . gene_id "RvY_05183"; transcript_id "RvY_05183.1"; Scaffold002 rebuild transcript 5261777 5261992 . - . gene_id "RvY_05184"; transcript_id "RvY_05184.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5261777 5261992 . - . gene_id "RvY_05184"; transcript_id "RvY_05184.1"; Scaffold002 rebuild transcript 5262113 5262583 . + . gene_id "RvY_05185"; transcript_id "RvY_05185.1"; annotation "hypothetical protein."; EC "EC3.6.1.-"; similar_genes "DHX9_MOUSE(e-value:1.2e-17;bit-score:88.0)"; Scaffold002 rebuild exon 5262113 5262272 . + . gene_id "RvY_05185"; transcript_id "RvY_05185.1"; Scaffold002 rebuild exon 5262384 5262583 . + . gene_id "RvY_05185"; transcript_id "RvY_05185.1"; Scaffold002 rebuild transcript 5263180 5266104 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; annotation "putative Eukaryotic translation initiation factor 3 subunit L"; Pfam "[Paf67] RNA polymerase I-associated factor PAF67"; KO "K15029"; similar_genes "EIF3L_DANRE(e-value:6.0e-28;bit-score:122.0)"; Scaffold002 rebuild exon 5263180 5263233 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5263300 5263470 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5263543 5263639 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5263716 5263789 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5263856 5263955 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5264062 5264420 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5264497 5264651 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5264731 5264821 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5264893 5265047 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5265127 5265199 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5265278 5265336 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5265410 5265495 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5265565 5265998 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild exon 5266102 5266104 . - . gene_id "RvY_05186"; transcript_id "RvY_05186.1"; Scaffold002 rebuild transcript 5266549 5268638 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; annotation "hypothetical protein."; Pfam "[TTKRSYEDQ] Predicted coiled-coil domain-containing protein|[KLRAQ] Predicted coiled-coil domain-containing protein"; Scaffold002 rebuild exon 5266549 5266644 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5266729 5266797 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5266879 5267019 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5267120 5267233 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5267330 5267503 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5267614 5267652 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5267726 5267788 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5267872 5267925 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5268006 5268044 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5268117 5268317 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild exon 5268375 5268638 . + . gene_id "RvY_05187"; transcript_id "RvY_05187.1"; Scaffold002 rebuild transcript 5269075 5269422 . - . gene_id "RvY_05188"; transcript_id "RvY_05188.1"; gene_name "SPCS1"; annotation "signal peptidase complex subunit 1 [EC:3.4.-.-]"; Pfam "[SPC12] Microsomal signal peptidase 12 kDa subunit (SPC12)"; EC "EC3.4.-.-"; KO "K12946"; Scaffold002 rebuild exon 5269075 5269422 . - . gene_id "RvY_05188"; transcript_id "RvY_05188.1"; Scaffold002 rebuild transcript 5270349 5271786 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; gene_name "K00966"; annotation "Mannose-1-phosphate guanyltransferase beta"; Pfam "[NTP_transf_3] MobA-like NTP transferase domain|[NTP_transferase] Nucleotidyl transferase|[Hexapep] Bacterial transferase hexapeptide (six repeats)"; CDD "N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation."; EC "EC2.7.7.13"; KO "K00966"; similar_genes "GMPPB_CAEBR(e-value:1.8e-80;bit-score:296.0)"; Scaffold002 rebuild exon 5270349 5270477 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; Scaffold002 rebuild exon 5270545 5270625 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; Scaffold002 rebuild exon 5270694 5270882 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; Scaffold002 rebuild exon 5270962 5271196 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; Scaffold002 rebuild exon 5271273 5271400 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; Scaffold002 rebuild exon 5271472 5271786 . + . gene_id "RvY_05189"; transcript_id "RvY_05189.1"; Scaffold002 rebuild transcript 5272085 5272795 . - . gene_id "RvY_05190"; transcript_id "RvY_05190.1"; gene_name "CSL4"; annotation "exosome complex component CSL4"; Pfam "[EXOSC1] Exosome component EXOSC1/CSL4|[ECR1_N] Exosome complex exonuclease RRP4 N-terminal region"; CDD "exosome complex RNA-binding protein Csl4; Provisional"; KO "K07573"; Scaffold002 rebuild exon 5272085 5272795 . - . gene_id "RvY_05190"; transcript_id "RvY_05190.1"; Scaffold002 rebuild transcript 5273348 5274458 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; gene_name "PTH2"; annotation "peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]"; Pfam "[PTH2] Peptidyl-tRNA hydrolase PTH2|[UBA] UBA/TS-N domain"; EC "EC3.1.1.29"; KO "K04794"; Scaffold002 rebuild exon 5273348 5273455 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; Scaffold002 rebuild exon 5273590 5273652 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; Scaffold002 rebuild exon 5273738 5273883 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; Scaffold002 rebuild exon 5273949 5274047 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; Scaffold002 rebuild exon 5274145 5274259 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; Scaffold002 rebuild exon 5274369 5274458 . + . gene_id "RvY_05191"; transcript_id "RvY_05191.1"; Scaffold002 rebuild transcript 5274981 5278531 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; gene_name "MCM4"; annotation "DNA replication licensing factor mcm4-B"; Pfam "[MCM] MCM2/3/5 family|[AAA_3] ATPase family associated with various cellular activities (AAA)|[AAA_5] AAA domain (dynein-related subfamily)|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02212"; similar_genes "MCM4B_XENLA(e-value:9.5e-105;bit-score:377.0)"; Scaffold002 rebuild exon 5274981 5275070 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5275165 5275375 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5275448 5275689 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5275748 5276020 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5276097 5276190 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5276251 5276427 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5276511 5276705 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5276776 5277007 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5277136 5277378 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5277446 5277680 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5277762 5278035 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5278105 5278174 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild exon 5278243 5278531 . - . gene_id "RvY_05192"; transcript_id "RvY_05192.1"; Scaffold002 rebuild transcript 5279097 5280123 . + . gene_id "RvY_05193"; transcript_id "RvY_05193.1"; gene_name "TFIIB"; annotation "Transcription initiation factor IIB"; Pfam "[Cyclin_N] Cyclin, N-terminal domain|[TFIIB] Transcription factor TFIIB repeat|[TF_Zn_Ribbon] TFIIB zinc-binding"; CDD "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]"; KO "K03124"; similar_genes "TF2B_MOUSE(e-value:1.7e-110;bit-score:396.0)"; Scaffold002 rebuild exon 5279097 5279547 . + . gene_id "RvY_05193"; transcript_id "RvY_05193.1"; Scaffold002 rebuild exon 5279627 5280123 . + . gene_id "RvY_05193"; transcript_id "RvY_05193.1"; Scaffold002 rebuild transcript 5281501 5282823 . + . gene_id "RvY_05194"; transcript_id "RvY_05194.1"; gene_name "TMX2"; annotation "hypothetical protein."; Pfam "[Thioredoxin]"; CDD "TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox Scaffold002 rebuild exon 5281501 5281704 . + . gene_id "RvY_05194"; transcript_id "RvY_05194.1"; Scaffold002 rebuild exon 5281827 5282001 . + . gene_id "RvY_05194"; transcript_id "RvY_05194.1"; Scaffold002 rebuild exon 5282148 5282400 . + . gene_id "RvY_05194"; transcript_id "RvY_05194.1"; Scaffold002 rebuild exon 5282487 5282616 . + . gene_id "RvY_05194"; transcript_id "RvY_05194.1"; Scaffold002 rebuild exon 5282695 5282823 . + . gene_id "RvY_05194"; transcript_id "RvY_05194.1"; Scaffold002 rebuild transcript 5283094 5287428 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; gene_name "DEAH_box_HrpA"; annotation "Probable ATP-dependent RNA helicase DHX37"; Pfam "[AAA_22] AAA domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[OB_NTP_bind] Oligonucleotide/oligosaccharide-binding (OB)-fold|[HA2] Helicase associated domain (HA2)"; CDD "ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing."; EC "EC3.6.1.-"; KO "K14780"; similar_genes "DHX37_HUMAN(e-value:4.7e-83;bit-score:305.0)"; Scaffold002 rebuild exon 5283094 5283202 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5283261 5283429 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5283518 5284201 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5284424 5285111 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5285297 5285785 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5285866 5285979 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5286045 5286726 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5286805 5286905 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5286976 5287182 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild exon 5287339 5287428 . - . gene_id "RvY_05195"; transcript_id "RvY_05195.1"; Scaffold002 rebuild transcript 5288133 5289929 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; annotation "Ras-related GTP-binding protein C"; Pfam "[Gtr1_RagA] Gtr1/RagA G protein conserved region"; similar_genes "RRAGC_MOUSE(e-value:4.7e-102;bit-score:368.0)"; Scaffold002 rebuild exon 5288133 5288135 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5288259 5288419 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5288509 5288603 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5288686 5288822 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5288900 5289099 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5289195 5289309 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5289371 5289513 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5289572 5289720 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild exon 5289781 5289929 . + . gene_id "RvY_05196"; transcript_id "RvY_05196.1"; Scaffold002 rebuild transcript 5290316 5291215 . - . gene_id "RvY_05197"; transcript_id "RvY_05197.1"; annotation "putative Soluble NSF attachment protein"; Pfam "[TPR_12] Tetratricopeptide repeat|[TPR_11] TPR repeat"; KO "K15296"; similar_genes "SNAP_DROME(e-value:2.4e-50;bit-score:196.0)"; Scaffold002 rebuild exon 5290316 5291215 . - . gene_id "RvY_05197"; transcript_id "RvY_05197.1"; Scaffold002 rebuild transcript 5292276 5294049 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; gene_name "FNTB"; annotation "protein farnesyltransferase subunit beta [EC:2.5.1.58]"; Pfam "[Prenyltrans_2] Prenyltransferase-like|[Prenyltrans] Prenyltransferase and squalene oxidase repeat|[Prenyltrans_1] Prenyltransferase-like"; CDD "Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis."; EC "EC2.5.1.58"; KO "K05954"; similar_genes "FNTB_BOVIN(e-value:2.0e-11;bit-score:67.0)"; Scaffold002 rebuild exon 5292276 5292677 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild exon 5292786 5293176 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild exon 5293245 5293346 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild exon 5293423 5293514 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild exon 5293619 5293688 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild exon 5293745 5293803 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild exon 5293939 5294049 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.1"; Scaffold002 rebuild transcript 5292276 5293616 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.2"; gene_name "FNTB"; annotation "protein farnesyltransferase subunit beta [EC:2.5.1.58]"; Pfam "[Prenyltrans_2] Prenyltransferase-like|[Prenyltrans] Prenyltransferase and squalene oxidase repeat|[Prenyltrans_1] Prenyltransferase-like"; CDD "Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis."; EC "EC2.5.1.58"; KO "K05954"; similar_genes "FNTB_BOVIN(e-value:2.0e-11;bit-score:67.0)"; Scaffold002 rebuild exon 5292276 5292677 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.2"; Scaffold002 rebuild exon 5292786 5293176 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.2"; Scaffold002 rebuild exon 5293245 5293346 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.2"; Scaffold002 rebuild exon 5293423 5293514 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.2"; Scaffold002 rebuild exon 5293596 5293616 . - . gene_id "RvY_05198"; transcript_id "RvY_05198.2"; Scaffold002 rebuild transcript 5295007 5295845 . + . gene_id "RvY_05199"; transcript_id "RvY_05199.1"; annotation "Ribosome biogenesis protein NSA2 homolog"; Pfam "[Ribosomal_S8e] Ribosomal protein S8e"; KO "K14842"; similar_genes "NSA2_HUMAN(e-value:3.7e-87;bit-score:319.0)"; Scaffold002 rebuild exon 5295007 5295459 . + . gene_id "RvY_05199"; transcript_id "RvY_05199.1"; Scaffold002 rebuild exon 5295519 5295845 . + . gene_id "RvY_05199"; transcript_id "RvY_05199.1"; Scaffold002 rebuild transcript 5296350 5296721 . + . gene_id "RvY_05200"; transcript_id "RvY_05200.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5296350 5296721 . + . gene_id "RvY_05200"; transcript_id "RvY_05200.1"; Scaffold002 rebuild transcript 5296744 5297524 . + . gene_id "RvY_05201"; transcript_id "RvY_05201.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5296744 5296905 . + . gene_id "RvY_05201"; transcript_id "RvY_05201.1"; Scaffold002 rebuild exon 5297026 5297142 . + . gene_id "RvY_05201"; transcript_id "RvY_05201.1"; Scaffold002 rebuild exon 5297288 5297524 . + . gene_id "RvY_05201"; transcript_id "RvY_05201.1"; Scaffold002 rebuild transcript 5298507 5300335 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; gene_name "COG1233"; annotation "putative Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2"; CDD "Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]"; EC "EC1.-.-.-"; similar_genes "PYRD2_HUMAN(e-value:8.0e-30;bit-score:128.0)"; Scaffold002 rebuild exon 5298507 5298714 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; Scaffold002 rebuild exon 5298825 5298950 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; Scaffold002 rebuild exon 5299014 5299552 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; Scaffold002 rebuild exon 5299648 5299783 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; Scaffold002 rebuild exon 5299904 5300131 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; Scaffold002 rebuild exon 5300268 5300335 . + . gene_id "RvY_05202"; transcript_id "RvY_05202.1"; Scaffold002 rebuild transcript 5301345 5302575 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5301345 5301660 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.1"; Scaffold002 rebuild exon 5301834 5301969 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.1"; Scaffold002 rebuild exon 5302036 5302131 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.1"; Scaffold002 rebuild exon 5302214 5302339 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.1"; Scaffold002 rebuild exon 5302560 5302575 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.1"; Scaffold002 rebuild transcript 5301345 5302343 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.2"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5301345 5301660 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.2"; Scaffold002 rebuild exon 5301834 5301969 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.2"; Scaffold002 rebuild exon 5302036 5302131 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.2"; Scaffold002 rebuild exon 5302214 5302343 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.2"; Scaffold002 rebuild transcript 5303459 5304271 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.3"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5303459 5303461 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.3"; Scaffold002 rebuild exon 5303543 5303613 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.3"; Scaffold002 rebuild exon 5303730 5304024 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.3"; Scaffold002 rebuild exon 5304101 5304271 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.3"; Scaffold002 rebuild transcript 5303459 5304330 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.4"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5303459 5303461 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.4"; Scaffold002 rebuild exon 5303543 5303613 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.4"; Scaffold002 rebuild exon 5303730 5303950 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.4"; Scaffold002 rebuild exon 5304101 5304330 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.4"; Scaffold002 rebuild transcript 5303459 5304069 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.5"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5303459 5303461 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.5"; Scaffold002 rebuild exon 5303543 5303613 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.5"; Scaffold002 rebuild exon 5303730 5304069 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.5"; Scaffold002 rebuild transcript 5302255 5302919 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.6"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5302255 5302375 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.6"; Scaffold002 rebuild exon 5302560 5302825 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.6"; Scaffold002 rebuild exon 5302914 5302919 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.6"; Scaffold002 rebuild transcript 5302916 5303773 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.7"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold002 rebuild exon 5302916 5303087 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.7"; Scaffold002 rebuild exon 5303356 5303461 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.7"; Scaffold002 rebuild exon 5303543 5303613 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.7"; Scaffold002 rebuild exon 5303730 5303773 . + . gene_id "RvY_05203"; transcript_id "RvY_05203.7"; Scaffold002 rebuild transcript 5304645 5305818 . + . gene_id "RvY_05204"; transcript_id "RvY_05204.1"; gene_name "Sec7"; annotation "hypothetical protein."; Pfam "[Sec7]"; CDD "Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity."; Scaffold002 rebuild exon 5304645 5305247 . + . gene_id "RvY_05204"; transcript_id "RvY_05204.1"; Scaffold002 rebuild exon 5305460 5305645 . + . gene_id "RvY_05204"; transcript_id "RvY_05204.1"; Scaffold002 rebuild exon 5305810 5305818 . + . gene_id "RvY_05204"; transcript_id "RvY_05204.1"; Scaffold002 rebuild transcript 5306583 5307672 . - . gene_id "RvY_05205"; transcript_id "RvY_05205.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5306583 5307157 . - . gene_id "RvY_05205"; transcript_id "RvY_05205.1"; Scaffold002 rebuild exon 5307234 5307672 . - . gene_id "RvY_05205"; transcript_id "RvY_05205.1"; Scaffold002 rebuild transcript 5307733 5309312 . - . gene_id "RvY_05206"; transcript_id "RvY_05206.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5307733 5308268 . - . gene_id "RvY_05206"; transcript_id "RvY_05206.1"; Scaffold002 rebuild exon 5308464 5309000 . - . gene_id "RvY_05206"; transcript_id "RvY_05206.1"; Scaffold002 rebuild exon 5309222 5309312 . - . gene_id "RvY_05206"; transcript_id "RvY_05206.1"; Scaffold002 rebuild transcript 5309705 5310503 . - . gene_id "RvY_05207"; transcript_id "RvY_05207.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5309705 5309864 . - . gene_id "RvY_05207"; transcript_id "RvY_05207.1"; Scaffold002 rebuild exon 5310229 5310503 . - . gene_id "RvY_05207"; transcript_id "RvY_05207.1"; Scaffold002 rebuild transcript 5311083 5311319 . + . gene_id "RvY_05208"; transcript_id "RvY_05208.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5311083 5311319 . + . gene_id "RvY_05208"; transcript_id "RvY_05208.1"; Scaffold002 rebuild transcript 5311625 5313219 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; gene_name "PRK05855"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "short chain dehydrogenase; Validated"; Scaffold002 rebuild exon 5311625 5311934 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild exon 5312011 5312140 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild exon 5312198 5312349 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild exon 5312418 5312453 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild exon 5312534 5312643 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild exon 5312714 5312952 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild exon 5313072 5313219 . - . gene_id "RvY_05209"; transcript_id "RvY_05209.1"; Scaffold002 rebuild transcript 5313734 5315184 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; annotation "hypothetical protein."; Pfam "[Tim17] Tim17/Tim22/Tim23/Pmp24 family"; Scaffold002 rebuild exon 5313734 5314017 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; Scaffold002 rebuild exon 5314177 5314342 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; Scaffold002 rebuild exon 5314420 5314508 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; Scaffold002 rebuild exon 5314629 5314696 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; Scaffold002 rebuild exon 5314755 5314833 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; Scaffold002 rebuild exon 5314896 5315184 . + . gene_id "RvY_05210"; transcript_id "RvY_05210.1"; Scaffold002 rebuild transcript 5315383 5317144 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; gene_name "PTK9"; annotation "putative Twinfilin"; Pfam "[Cofilin_ADF] Cofilin/tropomyosin-type actin-binding protein"; CDD "Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments."; KO "K08870"; similar_genes "TWF_DROPS(e-value:2.0e-26;bit-score:117.0)"; Scaffold002 rebuild exon 5315383 5315426 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5315495 5315594 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5315677 5315798 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5315878 5316028 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5316117 5316242 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5316331 5316435 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5316501 5316724 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5316791 5316841 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5316924 5317007 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild exon 5317120 5317144 . - . gene_id "RvY_05211"; transcript_id "RvY_05211.1"; Scaffold002 rebuild transcript 5317242 5317430 . + . gene_id "RvY_05212"; transcript_id "RvY_05212.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5317242 5317430 . + . gene_id "RvY_05212"; transcript_id "RvY_05212.1"; Scaffold002 rebuild transcript 5318196 5319544 . + . gene_id "RvY_05213"; transcript_id "RvY_05213.1"; gene_name "DUF1751"; annotation "hypothetical protein."; Pfam "[DUF1751] Eukaryotic integral membrane protein (DUF1751)"; CDD "Eukaryotic integral membrane protein (DUF1751). This domain is found in eukaryotic integral membrane proteins. YOL107W, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles."; Scaffold002 rebuild exon 5318196 5318378 . + . gene_id "RvY_05213"; transcript_id "RvY_05213.1"; Scaffold002 rebuild exon 5318488 5319008 . + . gene_id "RvY_05213"; transcript_id "RvY_05213.1"; Scaffold002 rebuild exon 5319069 5319248 . + . gene_id "RvY_05213"; transcript_id "RvY_05213.1"; Scaffold002 rebuild exon 5319361 5319544 . + . gene_id "RvY_05213"; transcript_id "RvY_05213.1"; Scaffold002 rebuild transcript 5319916 5321800 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; gene_name "OST1"; annotation "oligosaccharyltransferase complex subunit alpha (ribophorin I)"; Pfam "[Ribophorin_I] Ribophorin I"; EC "EC2.4.1.119"; KO "K12666"; similar_genes "RPN1_HUMAN(e-value:2.2e-21;bit-score:100.0)"; Scaffold002 rebuild exon 5319916 5320189 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild exon 5320292 5320391 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild exon 5320472 5320664 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild exon 5320779 5320985 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild exon 5321050 5321362 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild exon 5321425 5321492 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild exon 5321552 5321800 . - . gene_id "RvY_05214"; transcript_id "RvY_05214.1"; Scaffold002 rebuild transcript 5322461 5325754 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; gene_name "RBM5_10"; annotation "RNA-binding protein 5/10"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[zf-RanBP] Zn-finger in Ran binding protein and others|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold002 rebuild exon 5322461 5322484 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5322559 5322746 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5322827 5323019 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5323143 5323235 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5323308 5323371 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5323523 5323596 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5323667 5323810 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5323872 5323992 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5324079 5324309 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5324382 5324716 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5324808 5325155 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild exon 5325476 5325754 . + . gene_id "RvY_05215"; transcript_id "RvY_05215.1"; Scaffold002 rebuild transcript 5325855 5326689 . + . gene_id "RvY_05216"; transcript_id "RvY_05216.1"; gene_name "RBM5_10"; annotation "RNA-binding protein 5/10"; Pfam "[G-patch_2] DExH-box splicing factor binding site|[G-patch]"; CDD "glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins."; KO "K13094"; Scaffold002 rebuild exon 5325855 5326039 . + . gene_id "RvY_05216"; transcript_id "RvY_05216.1"; Scaffold002 rebuild exon 5326317 5326452 . + . gene_id "RvY_05216"; transcript_id "RvY_05216.1"; Scaffold002 rebuild exon 5326558 5326689 . + . gene_id "RvY_05216"; transcript_id "RvY_05216.1"; Scaffold002 rebuild transcript 5327129 5331001 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; gene_name "DYNC1I"; annotation "putative Dynein intermediate chain, cytosolic"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K10415"; similar_genes "DYIN_DROME(e-value:1.0e-27;bit-score:121.0)"; Scaffold002 rebuild exon 5327129 5327278 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5327591 5327716 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5327798 5328083 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5328307 5328554 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5328635 5329007 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5329077 5329242 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5329324 5329497 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5329988 5330008 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5330261 5330397 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5330478 5330595 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5330676 5330748 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild exon 5330894 5331001 . - . gene_id "RvY_05217"; transcript_id "RvY_05217.1"; Scaffold002 rebuild transcript 5331544 5332791 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; gene_name "STX17"; annotation "syntaxin 17"; KO "K08491"; Scaffold002 rebuild exon 5331544 5331702 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; Scaffold002 rebuild exon 5331767 5332007 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; Scaffold002 rebuild exon 5332077 5332201 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; Scaffold002 rebuild exon 5332290 5332427 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; Scaffold002 rebuild exon 5332528 5332579 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; Scaffold002 rebuild exon 5332667 5332791 . + . gene_id "RvY_05218"; transcript_id "RvY_05218.1"; Scaffold002 rebuild transcript 5333031 5334890 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; gene_name "RFC2_4"; annotation "Replication factor C subunit 4"; Pfam "[AAA_22] AAA domain|[Rep_fac_C] Replication factor C C-terminal domain|[AAA] ATPase family associated with various cellular activities (AAA)|[Rad17] Rad17 cell cycle checkpoint protein|[DNA_pol3_delta2] DNA polymerase III, delta subunit"; CDD "replication factor C small subunit; Reviewed"; KO "K10755"; similar_genes "RFC4_MOUSE(e-value:3.7e-70;bit-score:262.0)"; Scaffold002 rebuild exon 5333031 5333321 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5333405 5333530 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5333648 5333768 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5333832 5333975 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5334037 5334156 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5334292 5334371 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5334482 5334560 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild exon 5334637 5334890 . - . gene_id "RvY_05219"; transcript_id "RvY_05219.1"; Scaffold002 rebuild transcript 5335420 5335830 . - . gene_id "RvY_05220"; transcript_id "RvY_05220.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5335420 5335830 . - . gene_id "RvY_05220"; transcript_id "RvY_05220.1"; Scaffold002 rebuild transcript 5335947 5337391 . + . gene_id "RvY_05221"; transcript_id "RvY_05221.1"; gene_name "DDI1"; annotation "putative Protein DDI1 homolog 2"; Pfam "[ubiquitin] Ubiquitin family|[Asp_protease] Aspartyl protease|[UBA] UBA/TS-N domain|[Asp_protease_2] Aspartyl protease|[RVP] Retroviral aspartyl protease|[RVP_2] Retroviral aspartyl protease|[gag-asp_proteas] gag-polyprotein putative aspartyl protease"; CDD "RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI."; KO "K11885"; similar_genes "DDI2_MOUSE(e-value:1.0e-46;bit-score:184.0)"; Scaffold002 rebuild exon 5335947 5336185 . + . gene_id "RvY_05221"; transcript_id "RvY_05221.1"; Scaffold002 rebuild exon 5336249 5336648 . + . gene_id "RvY_05221"; transcript_id "RvY_05221.1"; Scaffold002 rebuild exon 5336710 5337028 . + . gene_id "RvY_05221"; transcript_id "RvY_05221.1"; Scaffold002 rebuild exon 5337093 5337391 . + . gene_id "RvY_05221"; transcript_id "RvY_05221.1"; Scaffold002 rebuild transcript 5340940 5347913 . + . gene_id "RvY_05222"; transcript_id "RvY_05222.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5340940 5341130 . + . gene_id "RvY_05222"; transcript_id "RvY_05222.1"; Scaffold002 rebuild exon 5347883 5347913 . + . gene_id "RvY_05222"; transcript_id "RvY_05222.1"; Scaffold002 rebuild transcript 5348432 5350375 . - . gene_id "RvY_05223"; transcript_id "RvY_05223.1"; gene_name "POU3F"; annotation "POU domain, class 3, transcription factor 3-A"; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; KO "K09365"; similar_genes "P3F3A_DANRE(e-value:4.2e-69;bit-score:259.0)"; Scaffold002 rebuild exon 5348432 5348540 . - . gene_id "RvY_05223"; transcript_id "RvY_05223.1"; Scaffold002 rebuild exon 5348745 5349078 . - . gene_id "RvY_05223"; transcript_id "RvY_05223.1"; Scaffold002 rebuild exon 5349310 5349324 . - . gene_id "RvY_05223"; transcript_id "RvY_05223.1"; Scaffold002 rebuild exon 5349616 5350375 . - . gene_id "RvY_05223"; transcript_id "RvY_05223.1"; Scaffold002 rebuild transcript 5356470 5358454 . - . gene_id "RvY_05224"; transcript_id "RvY_05224.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5356470 5356772 . - . gene_id "RvY_05224"; transcript_id "RvY_05224.1"; Scaffold002 rebuild exon 5357019 5357367 . - . gene_id "RvY_05224"; transcript_id "RvY_05224.1"; Scaffold002 rebuild exon 5357935 5358244 . - . gene_id "RvY_05224"; transcript_id "RvY_05224.1"; Scaffold002 rebuild exon 5358400 5358454 . - . gene_id "RvY_05224"; transcript_id "RvY_05224.1"; Scaffold002 rebuild transcript 5358043 5358252 . + . gene_id "RvY_05225"; transcript_id "RvY_05225.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5358043 5358252 . + . gene_id "RvY_05225"; transcript_id "RvY_05225.1"; Scaffold002 rebuild transcript 5361734 5362445 . - . gene_id "RvY_05226"; transcript_id "RvY_05226.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5361734 5361815 . - . gene_id "RvY_05226"; transcript_id "RvY_05226.1"; Scaffold002 rebuild exon 5362198 5362445 . - . gene_id "RvY_05226"; transcript_id "RvY_05226.1"; Scaffold002 rebuild transcript 5362284 5362523 . + . gene_id "RvY_05227"; transcript_id "RvY_05227.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5362284 5362331 . + . gene_id "RvY_05227"; transcript_id "RvY_05227.1"; Scaffold002 rebuild exon 5362410 5362523 . + . gene_id "RvY_05227"; transcript_id "RvY_05227.1"; Scaffold002 rebuild transcript 5364534 5367790 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; gene_name "NR4A1"; annotation "putative Probable nuclear hormone receptor HR38"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B. DNA-binding domain (DBD) of the orphan nuclear receptor, nerve growth factor-induced-B (NGFI-B) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NGFI-B interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. NGFI-B is a member of the nuclear-steroid receptor superfamily. NGFI-B is classified as an orphan receptor because no ligand has yet been identified. NGFI-B is an early immediate gene product of embryo development that is rapidly produced in response to a variety of cellular signals including nerve growth factor. It is involved in T-cell-mediated apoptosis, as well as neuronal differentiation and function. NGFI-B regulates transcription by binding to a specific DNA target upstream of its target genes and regulating the rate of transcriptional initiation. NGFI-B binds to the NGFI-B response element (NBRE) 5'-(A/T)AAAGGTCA as a monomer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, NGFI-B has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; KO "K04465"; similar_genes "HR38_DROME(e-value:2.0e-45;bit-score:180.0)"; Scaffold002 rebuild exon 5364534 5364790 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5365000 5365205 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5365344 5365537 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5365725 5365930 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5366071 5366200 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5366270 5366757 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5366870 5367425 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild exon 5367776 5367790 . - . gene_id "RvY_05228"; transcript_id "RvY_05228.1"; Scaffold002 rebuild transcript 5370839 5372490 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; gene_name "DNAJB11"; annotation "DnaJ homolog subfamily B member 11"; Pfam "[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]"; KO "K09517"; similar_genes "DJB11_BOVIN(e-value:7.9e-81;bit-score:298.0)"; Scaffold002 rebuild exon 5370839 5370909 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5371052 5371208 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5371312 5371403 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5371492 5371624 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5371687 5371829 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5371885 5372137 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5372200 5372359 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild exon 5372423 5372490 . + . gene_id "RvY_05229"; transcript_id "RvY_05229.1"; Scaffold002 rebuild transcript 5372904 5375611 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; gene_name "MAN1A"; annotation "Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; EC "EC3.2.1.113"; KO "K01230"; similar_genes "MA121_DROME(e-value:1.3e-57;bit-score:220.0)"; Scaffold002 rebuild exon 5372904 5373197 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5373259 5373431 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5373497 5373920 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5374279 5374402 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5374467 5374561 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5374653 5374733 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5374818 5375036 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild exon 5375114 5375611 . - . gene_id "RvY_05230"; transcript_id "RvY_05230.1"; Scaffold002 rebuild transcript 5377233 5383337 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; gene_name "PLCB"; annotation "putative 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1"; Pfam "[efhand_like] Phosphoinositide-specific phospholipase C, efhand-like|[PI-PLC-Y] Phosphatidylinositol-specific phospholipase C, Y domain|[PI-PLC-X] Phosphatidylinositol-specific phospholipase C, X domain|[C2]"; EC "EC3.1.4.11"; KO "K05858"; similar_genes "PLCE1_MOUSE(e-value:5.2e-27;bit-score:119.0)"; Scaffold002 rebuild exon 5377233 5377364 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5377432 5378354 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5378475 5378625 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5378696 5378967 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5379270 5379494 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5379651 5379732 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5379804 5379986 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5380074 5380419 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5380720 5380943 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5381006 5381075 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5381469 5381575 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5381676 5381925 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5382186 5382596 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5382707 5382809 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild exon 5383205 5383337 . - . gene_id "RvY_05231"; transcript_id "RvY_05231.1"; Scaffold002 rebuild transcript 5386218 5389419 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; gene_name "COG5038"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]"; similar_genes "ESYT2_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 5386218 5386363 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5386459 5386604 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5386714 5386805 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5386875 5387120 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5387229 5387336 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5387424 5387710 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5387817 5387890 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5387954 5388177 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5388248 5388760 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild exon 5388898 5389419 . + . gene_id "RvY_05232"; transcript_id "RvY_05232.1"; Scaffold002 rebuild transcript 5390363 5390716 . - . gene_id "RvY_05233"; transcript_id "RvY_05233.1"; annotation "hypothetical protein."; Pfam "[DUF2348] Uncharacterized conserved protein (DUF2348)"; Scaffold002 rebuild exon 5390363 5390716 . - . gene_id "RvY_05233"; transcript_id "RvY_05233.1"; Scaffold002 rebuild transcript 5391783 5395077 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; gene_name "PX_IRAS"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[PX]|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway."; Scaffold002 rebuild exon 5391783 5391872 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5391957 5392040 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5392118 5392219 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5392315 5392392 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5392464 5392670 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5392764 5392859 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5392932 5393159 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5393242 5393437 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5394605 5394792 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild exon 5394862 5395077 . + . gene_id "RvY_05234"; transcript_id "RvY_05234.1"; Scaffold002 rebuild transcript 5395368 5395972 . - . gene_id "RvY_05235"; transcript_id "RvY_05235.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_S18] Ribosomal protein S18"; Scaffold002 rebuild exon 5395368 5395673 . - . gene_id "RvY_05235"; transcript_id "RvY_05235.1"; Scaffold002 rebuild exon 5395757 5395972 . - . gene_id "RvY_05235"; transcript_id "RvY_05235.1"; Scaffold002 rebuild transcript 5396684 5398011 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M76] Peptidase M76 family"; Scaffold002 rebuild exon 5396684 5396979 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; Scaffold002 rebuild exon 5397092 5397173 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; Scaffold002 rebuild exon 5397258 5397392 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; Scaffold002 rebuild exon 5397524 5397613 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; Scaffold002 rebuild exon 5397743 5397901 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; Scaffold002 rebuild exon 5397973 5398011 . + . gene_id "RvY_05236"; transcript_id "RvY_05236.1"; Scaffold002 rebuild transcript 5399000 5401412 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; gene_name "gutB"; annotation "Sorbitol dehydrogenase"; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]"; EC "EC1.1.1.14"; KO "K00008"; similar_genes "DHSO_BOVIN(e-value:4.5e-77;bit-score:285.0)"; Scaffold002 rebuild exon 5399000 5399062 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399142 5399175 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399232 5399286 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399424 5399458 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399536 5399610 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399724 5399747 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399839 5399928 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5399994 5400039 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5400099 5400143 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5400199 5400272 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5400378 5400443 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5400511 5400645 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5400719 5400759 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5400898 5400948 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5401106 5401176 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild exon 5401241 5401412 . + . gene_id "RvY_05237"; transcript_id "RvY_05237.1"; Scaffold002 rebuild transcript 5402959 5406505 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; annotation "hypothetical protein."; Pfam "[Nic96] Nup93/Nic96"; KO "K14309"; Scaffold002 rebuild exon 5402959 5403184 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5403260 5403393 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5403547 5403822 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5403893 5404368 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5404579 5405041 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5405210 5405763 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5405849 5406014 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5406117 5406323 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild exon 5406386 5406505 . + . gene_id "RvY_05238"; transcript_id "RvY_05238.1"; Scaffold002 rebuild transcript 5406583 5408693 . - . gene_id "RvY_05239"; transcript_id "RvY_05239.1"; gene_name "GALNT"; annotation "polypeptide N-acetylgalactosaminyltransferase [EC:2.4.1.41]"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; KO "K00710"; similar_genes "GLT11_HUMAN(e-value:2.3e-25;bit-score:113.0)"; Scaffold002 rebuild exon 5406583 5407352 . - . gene_id "RvY_05239"; transcript_id "RvY_05239.1"; Scaffold002 rebuild exon 5407430 5407561 . - . gene_id "RvY_05239"; transcript_id "RvY_05239.1"; Scaffold002 rebuild exon 5407647 5408110 . - . gene_id "RvY_05239"; transcript_id "RvY_05239.1"; Scaffold002 rebuild exon 5408203 5408693 . - . gene_id "RvY_05239"; transcript_id "RvY_05239.1"; Scaffold002 rebuild transcript 5409267 5410202 . - . gene_id "RvY_05240"; transcript_id "RvY_05240.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5409267 5409432 . - . gene_id "RvY_05240"; transcript_id "RvY_05240.1"; Scaffold002 rebuild exon 5409519 5409818 . - . gene_id "RvY_05240"; transcript_id "RvY_05240.1"; Scaffold002 rebuild exon 5409964 5410202 . - . gene_id "RvY_05240"; transcript_id "RvY_05240.1"; Scaffold002 rebuild transcript 5410937 5414374 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.1"; gene_name "PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold002 rebuild exon 5410937 5411115 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.1"; Scaffold002 rebuild exon 5411303 5411821 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.1"; Scaffold002 rebuild exon 5411948 5412610 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.1"; Scaffold002 rebuild exon 5412719 5414130 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.1"; Scaffold002 rebuild exon 5414229 5414374 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.1"; Scaffold002 rebuild transcript 5410937 5414374 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; gene_name "PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold002 rebuild exon 5410937 5411115 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; Scaffold002 rebuild exon 5411303 5411821 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; Scaffold002 rebuild exon 5411948 5412610 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; Scaffold002 rebuild exon 5412719 5413124 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; Scaffold002 rebuild exon 5413188 5414130 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; Scaffold002 rebuild exon 5414229 5414374 . - . gene_id "RvY_05241"; transcript_id "RvY_05241.2"; Scaffold002 rebuild transcript 5414462 5415104 . - . gene_id "RvY_05242"; transcript_id "RvY_05242.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5414462 5414695 . - . gene_id "RvY_05242"; transcript_id "RvY_05242.1"; Scaffold002 rebuild exon 5415003 5415104 . - . gene_id "RvY_05242"; transcript_id "RvY_05242.1"; Scaffold002 rebuild transcript 5415358 5418366 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; annotation "hypothetical protein."; Pfam "[Bromo_TP] Bromodomain associated|[PHD] PHD-finger"; KO "K14650"; Scaffold002 rebuild exon 5415358 5415568 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; Scaffold002 rebuild exon 5415636 5416086 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; Scaffold002 rebuild exon 5416157 5417195 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; Scaffold002 rebuild exon 5417272 5417357 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; Scaffold002 rebuild exon 5417426 5417780 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; Scaffold002 rebuild exon 5418037 5418366 . + . gene_id "RvY_05243"; transcript_id "RvY_05243.1"; Scaffold002 rebuild transcript 5418716 5419494 . - . gene_id "RvY_05244"; transcript_id "RvY_05244.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5418716 5419245 . - . gene_id "RvY_05244"; transcript_id "RvY_05244.1"; Scaffold002 rebuild exon 5419323 5419494 . - . gene_id "RvY_05244"; transcript_id "RvY_05244.1"; Scaffold002 rebuild transcript 5420395 5420915 . - . gene_id "RvY_05245"; transcript_id "RvY_05245.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5420395 5420460 . - . gene_id "RvY_05245"; transcript_id "RvY_05245.1"; Scaffold002 rebuild exon 5420709 5420915 . - . gene_id "RvY_05245"; transcript_id "RvY_05245.1"; Scaffold002 rebuild transcript 5421168 5423428 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; gene_name "PX_MONaKA"; annotation "hypothetical protein."; Pfam "[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes."; Scaffold002 rebuild exon 5421168 5421296 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5421363 5421437 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5421503 5421673 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5421756 5421905 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5421976 5422100 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5422161 5422482 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5422538 5422692 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5422769 5422868 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5423080 5423265 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild exon 5423339 5423428 . - . gene_id "RvY_05246"; transcript_id "RvY_05246.1"; Scaffold002 rebuild transcript 5423342 5423677 . + . gene_id "RvY_05247"; transcript_id "RvY_05247.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5423342 5423677 . + . gene_id "RvY_05247"; transcript_id "RvY_05247.1"; Scaffold002 rebuild transcript 5424965 5425326 . - . gene_id "RvY_05248"; transcript_id "RvY_05248.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5424965 5425127 . - . gene_id "RvY_05248"; transcript_id "RvY_05248.1"; Scaffold002 rebuild exon 5425310 5425326 . - . gene_id "RvY_05248"; transcript_id "RvY_05248.1"; Scaffold002 rebuild transcript 5425694 5429782 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; gene_name "K08282"; annotation "Dual serine/threonine and tyrosine protein kinase"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1|EC2.7.12.1"; KO "K08282"; similar_genes "DUSTY_MOUSE(e-value:3.7e-72;bit-score:269.0)"; Scaffold002 rebuild exon 5425694 5425884 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5425958 5426017 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5426100 5426237 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5426342 5426456 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5426534 5426605 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5426661 5426723 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5426788 5426902 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5426981 5427039 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5427107 5427675 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5427802 5427963 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5428033 5428266 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5428339 5428571 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5428710 5428792 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5428890 5429090 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5429285 5429595 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild exon 5429659 5429782 . - . gene_id "RvY_05249"; transcript_id "RvY_05249.1"; Scaffold002 rebuild transcript 5431518 5433234 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; gene_name "CAPZA"; annotation "putative F-actin-capping protein subunit alpha"; Pfam "[F-actin_cap_A] F-actin capping protein alpha subunit"; KO "K10364"; similar_genes "CAPZA_DROME(e-value:3.2e-35;bit-score:146.0)"; Scaffold002 rebuild exon 5431518 5431556 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5431867 5431930 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5432019 5432070 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5432244 5432307 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5432376 5432665 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5432726 5432810 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5432877 5432948 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild exon 5433022 5433234 . + . gene_id "RvY_05250"; transcript_id "RvY_05250.1"; Scaffold002 rebuild transcript 5434486 5439678 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; gene_name "TBC"; annotation "hypothetical protein."; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBC25_MOUSE(e-value:2.9e-21;bit-score:100.0)"; Scaffold002 rebuild exon 5434486 5434539 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild exon 5436686 5436795 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild exon 5436963 5437114 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild exon 5437388 5437874 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild exon 5438118 5438590 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild exon 5438649 5439007 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild exon 5439226 5439678 . + . gene_id "RvY_05251"; transcript_id "RvY_05251.1"; Scaffold002 rebuild transcript 5442690 5443434 . + . gene_id "RvY_05252"; transcript_id "RvY_05252.1"; annotation "Rhombotin-1"; Pfam "[LIM]"; similar_genes "RBTN1_MOUSE(e-value:6.4e-53;bit-score:205.0)"; Scaffold002 rebuild exon 5442690 5442910 . + . gene_id "RvY_05252"; transcript_id "RvY_05252.1"; Scaffold002 rebuild exon 5442976 5443036 . + . gene_id "RvY_05252"; transcript_id "RvY_05252.1"; Scaffold002 rebuild exon 5443102 5443434 . + . gene_id "RvY_05252"; transcript_id "RvY_05252.1"; Scaffold002 rebuild transcript 5444789 5447840 . - . gene_id "RvY_05253"; transcript_id "RvY_05253.1"; gene_name "WD40"; annotation "putative Striatin-3"; Pfam "[WD40] WD domain, G-beta repeat|[Striatin] Striatin family"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "STRN3_HUMAN(e-value:7.7e-43;bit-score:171.0)"; Scaffold002 rebuild exon 5444789 5445563 . - . gene_id "RvY_05253"; transcript_id "RvY_05253.1"; Scaffold002 rebuild exon 5445647 5445882 . - . gene_id "RvY_05253"; transcript_id "RvY_05253.1"; Scaffold002 rebuild exon 5446157 5446563 . - . gene_id "RvY_05253"; transcript_id "RvY_05253.1"; Scaffold002 rebuild exon 5446773 5447063 . - . gene_id "RvY_05253"; transcript_id "RvY_05253.1"; Scaffold002 rebuild exon 5447126 5447840 . - . gene_id "RvY_05253"; transcript_id "RvY_05253.1"; Scaffold002 rebuild transcript 5449472 5449755 . + . gene_id "RvY_05254"; transcript_id "RvY_05254.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5449472 5449594 . + . gene_id "RvY_05254"; transcript_id "RvY_05254.1"; Scaffold002 rebuild exon 5449729 5449755 . + . gene_id "RvY_05254"; transcript_id "RvY_05254.1"; Scaffold002 rebuild transcript 5450629 5454436 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold002 rebuild exon 5450629 5450961 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.1"; Scaffold002 rebuild exon 5451896 5452233 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.1"; Scaffold002 rebuild exon 5453162 5453471 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.1"; Scaffold002 rebuild exon 5453628 5454024 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.1"; Scaffold002 rebuild exon 5454303 5454436 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.1"; Scaffold002 rebuild transcript 5450629 5453513 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.2"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold002 rebuild exon 5450629 5450961 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.2"; Scaffold002 rebuild exon 5451896 5452233 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.2"; Scaffold002 rebuild exon 5453162 5453513 . + . gene_id "RvY_05255"; transcript_id "RvY_05255.2"; Scaffold002 rebuild transcript 5455010 5457432 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5455010 5455014 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild exon 5455079 5455427 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild exon 5455492 5455749 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild exon 5455828 5456013 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild exon 5456091 5456447 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild exon 5456528 5456705 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild exon 5456771 5457432 . + . gene_id "RvY_05256"; transcript_id "RvY_05256.1"; Scaffold002 rebuild transcript 5457802 5460302 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; gene_name "DLD"; annotation "Dihydrolipoyl dehydrogenase, mitochondrial"; Pfam "[FAD_binding_2] FAD binding domain|[Pyr_redox] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[FAD_oxidored] FAD dependent oxidoreductase|[Pyr_redox_dim] Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain|[GIDA] Glucose inhibited division protein A|[HI0933_like] HI0933-like protein"; CDD "dihydrolipoamide dehydrogenase; Validated"; EC "EC1.8.1.4"; KO "K00382"; similar_genes "DLDH_PIG(e-value:1.3e-95;bit-score:347.0)"; Scaffold002 rebuild exon 5457802 5457960 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5458039 5458176 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5458399 5458588 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5458662 5459020 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5459259 5459608 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5459676 5459811 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5459895 5459974 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5460048 5460102 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild exon 5460261 5460302 . - . gene_id "RvY_05257"; transcript_id "RvY_05257.1"; Scaffold002 rebuild transcript 5460961 5464719 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; gene_name "MCM2"; annotation "DNA replication licensing factor MCM2"; Pfam "[MCM] MCM2/3/5 family|[AAA_3] ATPase family associated with various cellular activities (AAA)|[AAA_5] AAA domain (dynein-related subfamily)|[MCM2_N] Mini-chromosome maintenance protein 2|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02540"; similar_genes "MCM2_HUMAN(e-value:1.2e-104;bit-score:377.0)"; Scaffold002 rebuild exon 5460961 5461136 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5461207 5461391 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5461464 5461552 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5461640 5461933 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5462022 5462131 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5462305 5462647 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5462718 5462909 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5463075 5463584 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5463661 5463996 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5464055 5464237 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5464313 5464516 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild exon 5464585 5464719 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.1"; Scaffold002 rebuild transcript 5460961 5464525 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; gene_name "MCM2"; annotation "DNA replication licensing factor MCM2"; Pfam "[MCM] MCM2/3/5 family|[AAA_3] ATPase family associated with various cellular activities (AAA)|[AAA_5] AAA domain (dynein-related subfamily)|[MCM2_N] Mini-chromosome maintenance protein 2|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02540"; similar_genes "MCM2_HUMAN(e-value:1.2e-104;bit-score:377.0)"; Scaffold002 rebuild exon 5460961 5461136 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5461207 5461391 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5461464 5461552 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5461640 5461933 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5462022 5462131 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5462305 5462647 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5462718 5462909 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5463075 5463584 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5463661 5463996 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5464055 5464237 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild exon 5464313 5464525 . + . gene_id "RvY_05258"; transcript_id "RvY_05258.2"; Scaffold002 rebuild transcript 5465316 5471136 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; gene_name "purL"; annotation "Phosphoribosylformylglycinamidine synthase"; Pfam "[AIRS_C] AIR synthase related protein, C-terminal domain|[AIRS] AIR synthase related protein, N-terminal domain|[GATase_5] CobB/CobQ-like glutamine amidotransferase domain"; CDD "phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit."; EC "EC6.3.5.3"; KO "K01952"; similar_genes "PUR4_MOUSE(e-value:2.5e-71;bit-score:266.0)"; Scaffold002 rebuild exon 5465316 5465662 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5465745 5465895 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5465968 5466118 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5466205 5466313 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5466391 5466537 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5466622 5466749 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5466814 5466942 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5467015 5467278 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5467339 5467380 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5467451 5467636 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5467720 5467943 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5468015 5468122 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5468204 5468368 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5468424 5468528 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5468597 5468722 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5468786 5468966 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5469030 5469113 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5469196 5469357 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5469436 5469731 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5469798 5470023 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5470093 5470302 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5470382 5470699 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild exon 5470832 5471136 . + . gene_id "RvY_05259"; transcript_id "RvY_05259.1"; Scaffold002 rebuild transcript 5471263 5474076 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; gene_name "AidB"; annotation "hypothetical protein."; Pfam "[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "AidB. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehyrdogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates."; Scaffold002 rebuild exon 5471263 5471417 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5471484 5471757 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5471821 5472207 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5472267 5472352 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5472432 5472537 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5472620 5472697 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5472800 5472861 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5472942 5472994 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5473053 5473178 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5473244 5473533 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5473637 5473787 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild exon 5473937 5474076 . - . gene_id "RvY_05260"; transcript_id "RvY_05260.1"; Scaffold002 rebuild transcript 5476893 5477690 . + . gene_id "RvY_05261"; transcript_id "RvY_05261.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5476893 5477690 . + . gene_id "RvY_05261"; transcript_id "RvY_05261.1"; Scaffold002 rebuild transcript 5478729 5480966 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 5478729 5478896 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5478957 5479280 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5479357 5479417 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5479487 5479738 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5479804 5479913 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5479990 5480257 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5480316 5480579 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5480644 5480709 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild exon 5480776 5480966 . + . gene_id "RvY_05262"; transcript_id "RvY_05262.1"; Scaffold002 rebuild transcript 5481138 5481350 . - . gene_id "RvY_05263"; transcript_id "RvY_05263.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5481138 5481350 . - . gene_id "RvY_05263"; transcript_id "RvY_05263.1"; Scaffold002 rebuild transcript 5485216 5485910 . + . gene_id "RvY_05265"; transcript_id "RvY_05265.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5485216 5485282 . + . gene_id "RvY_05265"; transcript_id "RvY_05265.1"; Scaffold002 rebuild exon 5485492 5485910 . + . gene_id "RvY_05265"; transcript_id "RvY_05265.1"; Scaffold002 rebuild transcript 5486076 5486285 . - . gene_id "RvY_05266"; transcript_id "RvY_05266.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5486076 5486285 . - . gene_id "RvY_05266"; transcript_id "RvY_05266.1"; Scaffold002 rebuild transcript 5486625 5489456 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; gene_name "ABCB7"; annotation "ATP-binding cassette sub-family B member 7, mitochondrial"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]"; KO "K05662"; similar_genes "ABCB7_MOUSE(e-value:4.0e-97;bit-score:352.0)"; Scaffold002 rebuild exon 5486625 5486804 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5486870 5487163 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5487229 5487636 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5487847 5488198 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5488266 5488423 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5488488 5488767 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5488846 5489135 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild exon 5489202 5489456 . + . gene_id "RvY_05267"; transcript_id "RvY_05267.1"; Scaffold002 rebuild transcript 5490236 5492276 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; gene_name "POLD2"; annotation "DNA polymerase delta subunit 2"; Pfam "[DNA_pol_E_B] DNA polymerase alpha/epsilon subunit B"; EC "EC2.7.7.7"; KO "K02328"; similar_genes "DPOD2_ARATH(e-value:3.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 5490236 5490404 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5490487 5490847 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5490979 5491177 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5491259 5491339 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5491435 5491592 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5491660 5491787 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5491913 5492014 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild exon 5492146 5492276 . + . gene_id "RvY_05268"; transcript_id "RvY_05268.1"; Scaffold002 rebuild transcript 5493217 5494716 . + . gene_id "RvY_05269"; transcript_id "RvY_05269.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 5493217 5494716 . + . gene_id "RvY_05269"; transcript_id "RvY_05269.1"; Scaffold002 rebuild transcript 5495128 5503210 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; gene_name "JHDM1D_E_F"; annotation "JmjC domain-containing histone demethylation protein 1D/E/F"; Pfam "(2)[Cupin_8] Cupin-like domain|[JmjC] JmjC domain, hydroxylase|[PHD] PHD-finger"; KO "K11445"; similar_genes "JHD1D_MOUSE(e-value:1.1e-18;bit-score:91.0)"; Scaffold002 rebuild exon 5495128 5495262 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5495375 5495585 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5495672 5495922 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5496069 5496270 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5496386 5496536 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5496781 5496941 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5497008 5497125 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5497238 5497323 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5497402 5497667 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5497907 5498035 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5498124 5498246 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild exon 5502986 5503210 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.1"; Scaffold002 rebuild transcript 5495128 5499467 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; gene_name "JHDM1D_E_F"; annotation "JmjC domain-containing histone demethylation protein 1D/E/F"; Pfam "(2)[Cupin_8] Cupin-like domain|[JmjC] JmjC domain, hydroxylase|[PHD] PHD-finger"; KO "K11445"; similar_genes "JHD1D_MOUSE(e-value:1.1e-18;bit-score:91.0)"; Scaffold002 rebuild exon 5495128 5495262 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5495375 5495585 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5495672 5495922 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5496069 5496270 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5496386 5496536 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5496781 5496941 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5497008 5497125 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5497238 5497323 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5497402 5497667 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5497907 5498035 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5498124 5498246 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild exon 5499363 5499467 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.2"; Scaffold002 rebuild transcript 5495128 5498180 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; gene_name "JHDM1D_E_F"; annotation "JmjC domain-containing histone demethylation protein 1D/E/F"; Pfam "(2)[Cupin_8] Cupin-like domain|[JmjC] JmjC domain, hydroxylase|[PHD] PHD-finger"; KO "K11445"; similar_genes "JHD1D_MOUSE(e-value:1.1e-18;bit-score:91.0)"; Scaffold002 rebuild exon 5495128 5495262 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5495375 5495585 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5495672 5495922 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5496069 5496270 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5496386 5496536 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5496781 5496941 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5497008 5497125 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5497238 5497323 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5497402 5497667 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5497907 5498035 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild exon 5498124 5498180 . - . gene_id "RvY_05270"; transcript_id "RvY_05270.3"; Scaffold002 rebuild transcript 5500473 5503668 . + . gene_id "RvY_05271"; transcript_id "RvY_05271.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5500473 5500964 . + . gene_id "RvY_05271"; transcript_id "RvY_05271.1"; Scaffold002 rebuild exon 5503492 5503668 . + . gene_id "RvY_05271"; transcript_id "RvY_05271.1"; Scaffold002 rebuild transcript 5504263 5505030 . + . gene_id "RvY_05272"; transcript_id "RvY_05272.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5504263 5504395 . + . gene_id "RvY_05272"; transcript_id "RvY_05272.1"; Scaffold002 rebuild exon 5504807 5505030 . + . gene_id "RvY_05272"; transcript_id "RvY_05272.1"; Scaffold002 rebuild transcript 5504729 5505043 . - . gene_id "RvY_05273"; transcript_id "RvY_05273.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5504729 5505043 . - . gene_id "RvY_05273"; transcript_id "RvY_05273.1"; Scaffold002 rebuild transcript 5508460 5513447 . + . gene_id "RvY_05274"; transcript_id "RvY_05274.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5508460 5508737 . + . gene_id "RvY_05274"; transcript_id "RvY_05274.1"; Scaffold002 rebuild exon 5512237 5512405 . + . gene_id "RvY_05274"; transcript_id "RvY_05274.1"; Scaffold002 rebuild exon 5512503 5513070 . + . gene_id "RvY_05274"; transcript_id "RvY_05274.1"; Scaffold002 rebuild exon 5513158 5513447 . + . gene_id "RvY_05274"; transcript_id "RvY_05274.1"; Scaffold002 rebuild transcript 5514255 5515803 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; annotation "hypothetical protein."; Pfam "[GILT] Gamma interferon inducible lysosomal thiol reductase (GILT)"; Scaffold002 rebuild exon 5514255 5514737 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; Scaffold002 rebuild exon 5514983 5515057 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; Scaffold002 rebuild exon 5515171 5515272 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; Scaffold002 rebuild exon 5515367 5515513 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; Scaffold002 rebuild exon 5515610 5515678 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; Scaffold002 rebuild exon 5515774 5515803 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.1"; Scaffold002 rebuild transcript 5514255 5514821 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.2"; annotation "hypothetical protein."; Pfam "[GILT] Gamma interferon inducible lysosomal thiol reductase (GILT)"; Scaffold002 rebuild exon 5514255 5514821 . + . gene_id "RvY_05275"; transcript_id "RvY_05275.2"; Scaffold002 rebuild transcript 5516200 5517185 . + . gene_id "RvY_05276"; transcript_id "RvY_05276.1"; gene_name "IFI30"; annotation "interferon, gamma-inducible protein 30"; Pfam "[GILT] Gamma interferon inducible lysosomal thiol reductase (GILT)"; KO "K08059"; Scaffold002 rebuild exon 5516200 5516451 . + . gene_id "RvY_05276"; transcript_id "RvY_05276.1"; Scaffold002 rebuild exon 5516509 5516724 . + . gene_id "RvY_05276"; transcript_id "RvY_05276.1"; Scaffold002 rebuild exon 5516791 5516937 . + . gene_id "RvY_05276"; transcript_id "RvY_05276.1"; Scaffold002 rebuild exon 5517009 5517077 . + . gene_id "RvY_05276"; transcript_id "RvY_05276.1"; Scaffold002 rebuild exon 5517144 5517185 . + . gene_id "RvY_05276"; transcript_id "RvY_05276.1"; Scaffold002 rebuild transcript 5516946 5517360 . - . gene_id "RvY_05277"; transcript_id "RvY_05277.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5516946 5516968 . - . gene_id "RvY_05277"; transcript_id "RvY_05277.1"; Scaffold002 rebuild exon 5517075 5517360 . - . gene_id "RvY_05277"; transcript_id "RvY_05277.1"; Scaffold002 rebuild transcript 5517447 5518901 . - . gene_id "RvY_05278"; transcript_id "RvY_05278.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5517447 5517988 . - . gene_id "RvY_05278"; transcript_id "RvY_05278.1"; Scaffold002 rebuild exon 5518047 5518155 . - . gene_id "RvY_05278"; transcript_id "RvY_05278.1"; Scaffold002 rebuild exon 5518309 5518520 . - . gene_id "RvY_05278"; transcript_id "RvY_05278.1"; Scaffold002 rebuild exon 5518606 5518660 . - . gene_id "RvY_05278"; transcript_id "RvY_05278.1"; Scaffold002 rebuild exon 5518722 5518901 . - . gene_id "RvY_05278"; transcript_id "RvY_05278.1"; Scaffold002 rebuild transcript 5519706 5521712 . + . gene_id "RvY_05279"; transcript_id "RvY_05279.1"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold002 rebuild exon 5519706 5519849 . + . gene_id "RvY_05279"; transcript_id "RvY_05279.1"; Scaffold002 rebuild exon 5519922 5520534 . + . gene_id "RvY_05279"; transcript_id "RvY_05279.1"; Scaffold002 rebuild exon 5520626 5521210 . + . gene_id "RvY_05279"; transcript_id "RvY_05279.1"; Scaffold002 rebuild exon 5521390 5521712 . + . gene_id "RvY_05279"; transcript_id "RvY_05279.1"; Scaffold002 rebuild transcript 5526474 5526893 . + . gene_id "RvY_05280"; transcript_id "RvY_05280.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5526474 5526893 . + . gene_id "RvY_05280"; transcript_id "RvY_05280.1"; Scaffold002 rebuild transcript 5526480 5526893 . + . gene_id "RvY_05280"; transcript_id "RvY_05280.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5526480 5526893 . + . gene_id "RvY_05280"; transcript_id "RvY_05280.2"; Scaffold002 rebuild transcript 5526894 5528801 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; gene_name "COG5210"; annotation "hypothetical protein."; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "GTPase-activating protein [General function prediction only]"; Scaffold002 rebuild exon 5526894 5527200 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild exon 5527267 5527458 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild exon 5527533 5527757 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild exon 5527840 5527984 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild exon 5528127 5528277 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild exon 5528363 5528538 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild exon 5528627 5528801 . + . gene_id "RvY_05281"; transcript_id "RvY_05281.1"; Scaffold002 rebuild transcript 5529462 5533274 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; gene_name "DSL"; annotation "hypothetical protein."; Pfam "[DSL] Delta serrate ligand"; CDD "delta serrate ligand."; Scaffold002 rebuild exon 5529462 5529685 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5529768 5530085 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5530319 5530920 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5530994 5531707 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5531784 5532194 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5532365 5532557 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5532645 5532810 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild exon 5532876 5533274 . + . gene_id "RvY_05282"; transcript_id "RvY_05282.1"; Scaffold002 rebuild transcript 5536924 5541278 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; gene_name "(1)PAX6(2)PHO2(3)PAX"; annotation "(1,3)Paired box protein Pax-6(2)putative Paired box protein Pax-6"; Pfam "(1,3)[PAX] 'Paired box' domain|(1,2)[Homeobox]"; CDD "(1,3)Paired Box domain."; KO "(1)K08031(2)K02646"; similar_genes "(1,3)PAX6_DROME(e-value:1.3e-55;bit-score:214.0)(2)PAX6_HUMAN(e-value:5.3e-29;bit-score:125.0)"; Scaffold002 rebuild exon 5536924 5537033 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5537105 5537382 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5537482 5537696 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5537968 5538050 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5538163 5538348 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5539450 5539720 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5540177 5540523 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild exon 5541266 5541278 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.1"; Scaffold002 rebuild transcript 5536932 5539651 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.2"; gene_name "(1)PAX6(2)PHO2(3)PAX"; annotation "(1,3)Paired box protein Pax-6(2)putative Paired box protein Pax-6"; Pfam "(1,3)[PAX] 'Paired box' domain|(1,2)[Homeobox]"; CDD "(1,3)Paired Box domain."; KO "(1)K08031(2)K02646"; similar_genes "(1,3)PAX6_DROME(e-value:1.3e-55;bit-score:214.0)(2)PAX6_HUMAN(e-value:5.3e-29;bit-score:125.0)"; Scaffold002 rebuild exon 5536932 5537382 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.2"; Scaffold002 rebuild exon 5537482 5537696 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.2"; Scaffold002 rebuild exon 5537968 5538050 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.2"; Scaffold002 rebuild exon 5538163 5538348 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.2"; Scaffold002 rebuild exon 5539450 5539651 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.2"; Scaffold002 rebuild transcript 5538014 5541278 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.3"; gene_name "(1)PAX6(2)PHO2(3)PAX"; annotation "(1,3)Paired box protein Pax-6(2)putative Paired box protein Pax-6"; Pfam "(1,3)[PAX] 'Paired box' domain|(1,2)[Homeobox]"; CDD "(1,3)Paired Box domain."; KO "(1)K08031(2)K02646"; similar_genes "(1,3)PAX6_DROME(e-value:1.3e-55;bit-score:214.0)(2)PAX6_HUMAN(e-value:5.3e-29;bit-score:125.0)"; Scaffold002 rebuild exon 5538014 5538348 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.3"; Scaffold002 rebuild exon 5539450 5539720 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.3"; Scaffold002 rebuild exon 5540177 5540523 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.3"; Scaffold002 rebuild exon 5541266 5541278 . - . gene_id "RvY_05283"; transcript_id "RvY_05283.3"; Scaffold002 rebuild transcript 5542368 5545963 . + . gene_id "RvY_05284"; transcript_id "RvY_05284.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5542368 5542521 . + . gene_id "RvY_05284"; transcript_id "RvY_05284.1"; Scaffold002 rebuild exon 5545761 5545963 . + . gene_id "RvY_05284"; transcript_id "RvY_05284.1"; Scaffold002 rebuild transcript 5547834 5550521 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; gene_name "FKBP6"; annotation "FK506-binding protein 6 [EC:5.2.1.8]"; Pfam "[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; EC "EC5.2.1.8"; KO "K09572"; Scaffold002 rebuild exon 5547834 5548319 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild exon 5548796 5548972 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild exon 5549050 5549282 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild exon 5549359 5549459 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild exon 5549689 5550115 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild exon 5550208 5550349 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild exon 5550453 5550521 . - . gene_id "RvY_05285"; transcript_id "RvY_05285.1"; Scaffold002 rebuild transcript 5551572 5569704 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; gene_name "PLXNA"; annotation "putative Plexin-A4"; Pfam "[PSI] Plexin repeat|[Plexin_cytopl] Plexin cytoplasmic RasGAP domain|[TIG] IPT/TIG domain|[Sema]"; KO "K06820"; similar_genes "PLXA4_DANRE(e-value:5.0e-40;bit-score:162.0)"; Scaffold002 rebuild exon 5551572 5551748 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5551819 5552046 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5552112 5552559 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5552645 5553000 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5553075 5553221 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5553303 5553720 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5553781 5554098 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5554159 5555261 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5555326 5555448 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5555582 5556089 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5556339 5556640 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5556787 5556916 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5559520 5559620 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5559708 5559836 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5562578 5562760 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5567209 5567632 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5567821 5568272 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild exon 5569261 5569704 . - . gene_id "RvY_05286"; transcript_id "RvY_05286.1"; Scaffold002 rebuild transcript 5570695 5571307 . - . gene_id "RvY_05287"; transcript_id "RvY_05287.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5570695 5570700 . - . gene_id "RvY_05287"; transcript_id "RvY_05287.1"; Scaffold002 rebuild exon 5570918 5571307 . - . gene_id "RvY_05287"; transcript_id "RvY_05287.1"; Scaffold002 rebuild transcript 5571435 5572147 . + . gene_id "RvY_05288"; transcript_id "RvY_05288.1"; gene_name "Pam16"; annotation "hypothetical protein."; Pfam "[Pam16]"; CDD "Pam16. The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70."; similar_genes "TIM16_HUMAN(e-value:5.4e-14;bit-score:76.0)"; Scaffold002 rebuild exon 5571435 5571449 . + . gene_id "RvY_05288"; transcript_id "RvY_05288.1"; Scaffold002 rebuild exon 5571526 5571610 . + . gene_id "RvY_05288"; transcript_id "RvY_05288.1"; Scaffold002 rebuild exon 5571703 5571797 . + . gene_id "RvY_05288"; transcript_id "RvY_05288.1"; Scaffold002 rebuild exon 5571884 5572147 . + . gene_id "RvY_05288"; transcript_id "RvY_05288.1"; Scaffold002 rebuild transcript 5572643 5576255 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; gene_name "EXOC4"; annotation "exocyst complex component 4"; Pfam "[Sec8_exocyst] Sec8 exocyst complex component specific domain"; KO "K06111"; Scaffold002 rebuild exon 5572643 5572858 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5572925 5573387 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5573656 5574253 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5574338 5574502 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5574587 5574749 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5574829 5575062 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5575127 5575552 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild exon 5575758 5576255 . - . gene_id "RvY_05289"; transcript_id "RvY_05289.1"; Scaffold002 rebuild transcript 5576828 5577524 . + . gene_id "RvY_05290"; transcript_id "RvY_05290.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5576828 5577068 . + . gene_id "RvY_05290"; transcript_id "RvY_05290.1"; Scaffold002 rebuild exon 5577126 5577299 . + . gene_id "RvY_05290"; transcript_id "RvY_05290.1"; Scaffold002 rebuild exon 5577424 5577524 . + . gene_id "RvY_05290"; transcript_id "RvY_05290.1"; Scaffold002 rebuild transcript 5578182 5585572 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; gene_name "(1)CACNA1G(3)CACNA1N"; annotation "(1,3)Voltage-dependent T-type calcium channel subunit alpha-1I(2)putative Voltage-dependent T-type calcium channel subunit alpha-1H"; Pfam "(1,3)[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "(1)K04854(3)K05315"; similar_genes "(1,3)CAC1I_HUMAN(e-value:7.8e-79;bit-score:291.0)(2)CAC1H_HUMAN(e-value:3.1e-31;bit-score:133.0)"; Scaffold002 rebuild exon 5578182 5578442 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5578509 5578757 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5578819 5578940 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5579009 5579158 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5579227 5579357 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5579444 5579705 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5579774 5579866 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5579945 5580044 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5580141 5580380 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5580441 5580567 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5580628 5580950 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5581032 5581155 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5581232 5581711 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5581817 5581993 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5582072 5582619 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5583483 5583600 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5583694 5583730 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5583811 5583959 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5584029 5584126 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5584199 5584252 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5584323 5584594 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5584763 5585333 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5585388 5585438 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild exon 5585510 5585572 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.1"; Scaffold002 rebuild transcript 5579892 5585572 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; gene_name "(1)CACNA1G(3)CACNA1N"; annotation "(1,3)Voltage-dependent T-type calcium channel subunit alpha-1I(2)putative Voltage-dependent T-type calcium channel subunit alpha-1H"; Pfam "(1,3)[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "(1)K04854(3)K05315"; similar_genes "(1,3)CAC1I_HUMAN(e-value:7.8e-79;bit-score:291.0)(2)CAC1H_HUMAN(e-value:3.1e-31;bit-score:133.0)"; Scaffold002 rebuild exon 5579892 5580044 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5580141 5580380 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5580441 5580567 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5580628 5580815 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5580882 5580950 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5581032 5581155 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5581232 5581711 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5581817 5581993 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5582072 5582619 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5582956 5583109 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5583694 5583730 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5583811 5583959 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5584029 5584126 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5584199 5584252 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5584323 5584594 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5584763 5585333 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5585388 5585438 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild exon 5585510 5585572 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.2"; Scaffold002 rebuild transcript 5578182 5581593 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; gene_name "(1)CACNA1G(3)CACNA1N"; annotation "(1,3)Voltage-dependent T-type calcium channel subunit alpha-1I(2)putative Voltage-dependent T-type calcium channel subunit alpha-1H"; Pfam "(1,3)[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "(1)K04854(3)K05315"; similar_genes "(1,3)CAC1I_HUMAN(e-value:7.8e-79;bit-score:291.0)(2)CAC1H_HUMAN(e-value:3.1e-31;bit-score:133.0)"; Scaffold002 rebuild exon 5578182 5578442 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5578509 5578757 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5578819 5578940 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5579009 5579158 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5579227 5579357 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5579444 5579705 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5579774 5579866 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5579945 5580044 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5580141 5580380 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5580441 5580567 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5580628 5580815 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5580882 5580950 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5581032 5581155 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild exon 5581232 5581593 . - . gene_id "RvY_05291"; transcript_id "RvY_05291.3"; Scaffold002 rebuild transcript 5586346 5590660 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; annotation "hypothetical protein."; Pfam "[Ion_trans] Ion transport protein"; similar_genes "(1)CAC1I_HUMAN(e-value:3.2e-16;bit-score:83.0)(2)CAC1I_HUMAN(e-value:9.8e-22;bit-score:101.0)"; Scaffold002 rebuild exon 5586346 5586587 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild exon 5586670 5586767 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild exon 5586830 5586862 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild exon 5586935 5587002 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild exon 5587091 5587175 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild exon 5587240 5587296 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild exon 5590296 5590660 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.1"; Scaffold002 rebuild transcript 5586360 5590660 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; annotation "hypothetical protein."; Pfam "[Ion_trans] Ion transport protein"; similar_genes "(1)CAC1I_HUMAN(e-value:3.2e-16;bit-score:83.0)(2)CAC1I_HUMAN(e-value:9.8e-22;bit-score:101.0)"; Scaffold002 rebuild exon 5586360 5586418 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5586504 5586587 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5586670 5586767 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5586830 5586862 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5586935 5587002 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5587091 5587175 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5587240 5587296 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild exon 5590296 5590660 . - . gene_id "RvY_05292"; transcript_id "RvY_05292.2"; Scaffold002 rebuild transcript 5586493 5587439 . + . gene_id "RvY_05293"; transcript_id "RvY_05293.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5586493 5586639 . + . gene_id "RvY_05293"; transcript_id "RvY_05293.1"; Scaffold002 rebuild exon 5587126 5587296 . + . gene_id "RvY_05293"; transcript_id "RvY_05293.1"; Scaffold002 rebuild exon 5587431 5587439 . + . gene_id "RvY_05293"; transcript_id "RvY_05293.1"; Scaffold002 rebuild transcript 5592306 5594111 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; gene_name "IDH3"; annotation "Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial"; Pfam "[Iso_dh] Isocitrate/isopropylmalate dehydrogenase"; CDD "isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1."; EC "EC1.1.1.41"; KO "K00030"; similar_genes "IDH3G_RAT(e-value:6.3e-51;bit-score:198.0)"; Scaffold002 rebuild exon 5592306 5592443 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild exon 5592576 5592888 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild exon 5592977 5593167 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild exon 5593280 5593413 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild exon 5593490 5593739 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild exon 5593810 5594012 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild exon 5594075 5594111 . + . gene_id "RvY_05294"; transcript_id "RvY_05294.1"; Scaffold002 rebuild transcript 5594957 5595274 . + . gene_id "RvY_05295"; transcript_id "RvY_05295.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5594957 5595274 . + . gene_id "RvY_05295"; transcript_id "RvY_05295.1"; Scaffold002 rebuild transcript 5595308 5597473 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; gene_name "MgtE"; annotation "hypothetical protein."; Pfam "[MgtE] Divalent cation transporter"; CDD "Divalent cation transporter. This region is the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers. Members of this family probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding (Bateman A unpubl.)"; KO "K15122"; similar_genes "S41A2_XENLA(e-value:1.1e-22;bit-score:104.0)"; Scaffold002 rebuild exon 5595308 5595800 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild exon 5595861 5595898 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild exon 5596020 5596341 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild exon 5596403 5596549 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild exon 5596623 5596862 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild exon 5596932 5597279 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild exon 5597349 5597473 . + . gene_id "RvY_05296"; transcript_id "RvY_05296.1"; Scaffold002 rebuild transcript 5598131 5598397 . + . gene_id "RvY_05297"; transcript_id "RvY_05297.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5598131 5598397 . + . gene_id "RvY_05297"; transcript_id "RvY_05297.1"; Scaffold002 rebuild transcript 5598959 5599980 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.1"; gene_name "DUF2365"; annotation "hypothetical protein."; Pfam "[DUF2365] Uncharacterized conserved protein (DUF2365)"; CDD "Uncharacterized conserved protein (DUF2365). This is a family of conserved proteins found from nematodes to humans. The function is unknown."; Scaffold002 rebuild exon 5598959 5599274 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.1"; Scaffold002 rebuild exon 5599339 5599475 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.1"; Scaffold002 rebuild exon 5599549 5599632 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.1"; Scaffold002 rebuild exon 5599712 5599863 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.1"; Scaffold002 rebuild exon 5599926 5599980 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.1"; Scaffold002 rebuild transcript 5598959 5599980 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; gene_name "DUF2365"; annotation "hypothetical protein."; Pfam "[DUF2365] Uncharacterized conserved protein (DUF2365)"; CDD "Uncharacterized conserved protein (DUF2365). This is a family of conserved proteins found from nematodes to humans. The function is unknown."; Scaffold002 rebuild exon 5598959 5599274 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; Scaffold002 rebuild exon 5599339 5599475 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; Scaffold002 rebuild exon 5599549 5599632 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; Scaffold002 rebuild exon 5599712 5599742 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; Scaffold002 rebuild exon 5599818 5599863 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; Scaffold002 rebuild exon 5599926 5599980 . + . gene_id "RvY_05298"; transcript_id "RvY_05298.2"; Scaffold002 rebuild transcript 5600074 5601755 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; gene_name "PRPF18"; annotation "putative Pre-mRNA-splicing factor 18"; Pfam "[Prp18]|[PRP4] pre-mRNA processing factor 4 (PRP4) like"; KO "K12817"; similar_genes "PRP18_DANRE(e-value:2.1e-30;bit-score:130.0)"; Scaffold002 rebuild exon 5600074 5600201 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5600288 5600477 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5600564 5600773 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5600858 5601001 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5601106 5601219 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5601308 5601391 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5601471 5601602 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild exon 5601687 5601755 . - . gene_id "RvY_05299"; transcript_id "RvY_05299.1"; Scaffold002 rebuild transcript 5602242 5603135 . + . gene_id "RvY_05300"; transcript_id "RvY_05300.1"; gene_name "TFIID6"; annotation "transcription initiation factor TFIID subunit D6"; Pfam "[TAFII55_N] TAFII55 protein conserved region"; KO "K03132"; similar_genes "TAF7L_MOUSE(e-value:4.7e-13;bit-score:72.0)"; Scaffold002 rebuild exon 5602242 5602568 . + . gene_id "RvY_05300"; transcript_id "RvY_05300.1"; Scaffold002 rebuild exon 5602656 5603135 . + . gene_id "RvY_05300"; transcript_id "RvY_05300.1"; Scaffold002 rebuild transcript 5603374 5615685 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; gene_name "CELSR1"; annotation "cadherin EGF LAG seven-pass G-type receptor 1 (flamingo)"; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[7tm_2] 7 transmembrane receptor (Secretin family)|[Cadherin]|[DUF3497]|[Laminin_G_1] Laminin G domain"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; KO "K04600"; similar_genes "CELR2_RAT(e-value:3.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 5603374 5603392 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5603450 5603861 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5603943 5604228 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5604298 5604466 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5604525 5604750 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5604836 5606305 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5607186 5608202 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5608307 5608432 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5608495 5608795 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5608868 5609066 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5609127 5609361 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5609440 5609565 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5609630 5609804 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5609881 5610083 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5610152 5610298 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5613947 5614195 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5614340 5614669 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5614804 5615178 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild exon 5615361 5615685 . - . gene_id "RvY_05301"; transcript_id "RvY_05301.1"; Scaffold002 rebuild transcript 5616265 5616775 . - . gene_id "RvY_05302"; transcript_id "RvY_05302.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5616265 5616317 . - . gene_id "RvY_05302"; transcript_id "RvY_05302.1"; Scaffold002 rebuild exon 5616577 5616775 . - . gene_id "RvY_05302"; transcript_id "RvY_05302.1"; Scaffold002 rebuild transcript 5617876 5619031 . - . gene_id "RvY_05303"; transcript_id "RvY_05303.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "(1)PCDA4_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 5617876 5618103 . - . gene_id "RvY_05303"; transcript_id "RvY_05303.1"; Scaffold002 rebuild exon 5618192 5619031 . - . gene_id "RvY_05303"; transcript_id "RvY_05303.1"; Scaffold002 rebuild transcript 5618138 5619031 . - . gene_id "RvY_05303"; transcript_id "RvY_05303.2"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "(1)PCDA4_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold002 rebuild exon 5618138 5619031 . - . gene_id "RvY_05303"; transcript_id "RvY_05303.2"; Scaffold002 rebuild transcript 5621120 5623512 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; gene_name "Pat_PNPLA8"; annotation "putative Calcium-independent phospholipase A2-gamma"; Pfam "[Patatin] Patatin-like phospholipase"; CDD "Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus."; EC "EC3.1.1.5"; similar_genes "PLPL8_RABIT(e-value:7.7e-26;bit-score:115.0)"; Scaffold002 rebuild exon 5621120 5621554 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5621623 5621670 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5621733 5621982 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5622046 5622099 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5622167 5622201 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5622291 5622394 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5622470 5622543 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild exon 5622638 5623512 . - . gene_id "RvY_05304"; transcript_id "RvY_05304.1"; Scaffold002 rebuild transcript 5626162 5627079 . - . gene_id "RvY_05305"; transcript_id "RvY_05305.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5626162 5626487 . - . gene_id "RvY_05305"; transcript_id "RvY_05305.1"; Scaffold002 rebuild exon 5626583 5626669 . - . gene_id "RvY_05305"; transcript_id "RvY_05305.1"; Scaffold002 rebuild exon 5626782 5626898 . - . gene_id "RvY_05305"; transcript_id "RvY_05305.1"; Scaffold002 rebuild exon 5627019 5627079 . - . gene_id "RvY_05305"; transcript_id "RvY_05305.1"; Scaffold002 rebuild transcript 5627940 5631458 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; gene_name "SpeE"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Spermine_synth] Spermine/spermidine synthase|[Methyltransf_12] Methyltransferase domain|[MTS] Methyltransferase small domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "Spermidine synthase [Amino acid transport and metabolism]"; EC "EC2.1.1.-"; similar_genes "MTL13_BOVIN(e-value:3.1e-12;bit-score:70.0)"; Scaffold002 rebuild exon 5627940 5628094 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5628151 5628406 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5628697 5628728 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5628803 5629147 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5629213 5629326 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5629398 5629602 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5629672 5629855 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5629944 5630081 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5630162 5630389 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5630454 5630634 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5630724 5630754 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5630838 5630933 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5631015 5631147 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5631252 5631295 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild exon 5631369 5631458 . - . gene_id "RvY_05306"; transcript_id "RvY_05306.1"; Scaffold002 rebuild transcript 5635461 5643080 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; annotation "hypothetical protein."; Pfam "[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; KO "K15682"; similar_genes "PZRN3_RAT(e-value:5.4e-14;bit-score:76.0)"; Scaffold002 rebuild exon 5635461 5635847 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild exon 5636071 5636931 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild exon 5637024 5637269 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild exon 5637348 5637446 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild exon 5638075 5638216 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild exon 5638295 5638518 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild exon 5643060 5643080 . - . gene_id "RvY_05307"; transcript_id "RvY_05307.1"; Scaffold002 rebuild transcript 5643135 5643302 . - . gene_id "RvY_05308"; transcript_id "RvY_05308.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5643135 5643302 . - . gene_id "RvY_05308"; transcript_id "RvY_05308.1"; Scaffold002 rebuild transcript 5644279 5644452 . - . gene_id "RvY_05309"; transcript_id "RvY_05309.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5644279 5644452 . - . gene_id "RvY_05309"; transcript_id "RvY_05309.1"; Scaffold002 rebuild transcript 5647352 5649594 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; gene_name "FHIT"; annotation "putative Nitrilase homolog 1"; Pfam "[HIT]|[CN_hydrolase] Carbon-nitrogen hydrolase|[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10."; EC "EC3.5.-.-|EC3.6.1.29"; KO "K01522"; similar_genes "NIT1_BOVIN(e-value:1.7e-42;bit-score:170.0)"; Scaffold002 rebuild exon 5647352 5647582 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5647707 5647758 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5647893 5648197 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5648332 5648366 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5648481 5648556 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5648630 5648731 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5648808 5649090 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5649155 5649300 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild exon 5649388 5649594 . + . gene_id "RvY_05310"; transcript_id "RvY_05310.1"; Scaffold002 rebuild transcript 5650128 5651932 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; gene_name "DEP_1_DEP6"; annotation "hypothetical protein."; Pfam "[DEP] Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown."; similar_genes "DEPD6_MOUSE(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 5650128 5650163 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5650249 5650341 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5650440 5650529 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5650584 5650759 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5650842 5651030 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5651096 5651323 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5651402 5651482 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5651589 5651779 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild exon 5651874 5651932 . - . gene_id "RvY_05311"; transcript_id "RvY_05311.1"; Scaffold002 rebuild transcript 5653596 5655934 . + . gene_id "RvY_05312"; transcript_id "RvY_05312.1"; gene_name "DUSP"; annotation "putative Dual specificity protein phosphatase 9"; Pfam "[Rhodanese] Rhodanese-like domain|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatase, catalytic domain."; EC "EC3.1.3.16|EC3.1.3.48"; KO "K04459"; similar_genes "DUS9_HUMAN(e-value:7.4e-37;bit-score:152.0)"; Scaffold002 rebuild exon 5653596 5653956 . + . gene_id "RvY_05312"; transcript_id "RvY_05312.1"; Scaffold002 rebuild exon 5654878 5655306 . + . gene_id "RvY_05312"; transcript_id "RvY_05312.1"; Scaffold002 rebuild exon 5655591 5655934 . + . gene_id "RvY_05312"; transcript_id "RvY_05312.1"; Scaffold002 rebuild transcript 5656732 5657382 . - . gene_id "RvY_05313"; transcript_id "RvY_05313.1"; gene_name "RP-L29e"; annotation "large subunit ribosomal protein L29e"; Pfam "[Ribosomal_L29e] Ribosomal L29e protein family"; KO "K02905"; similar_genes "RL29_RAT(e-value:9.2e-14;bit-score:75.0)"; Scaffold002 rebuild exon 5656732 5656941 . - . gene_id "RvY_05313"; transcript_id "RvY_05313.1"; Scaffold002 rebuild exon 5657192 5657256 . - . gene_id "RvY_05313"; transcript_id "RvY_05313.1"; Scaffold002 rebuild exon 5657346 5657382 . - . gene_id "RvY_05313"; transcript_id "RvY_05313.1"; Scaffold002 rebuild transcript 5658176 5661450 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; gene_name "FAA1"; annotation "Long-chain-fatty-acid--CoA ligase ACSBG2"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]"; EC "EC6.2.1.3"; KO "K15013"; similar_genes "ACBG2_XENLA(e-value:1.5e-73;bit-score:273.0)"; Scaffold002 rebuild exon 5658176 5658261 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5658339 5658523 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5658585 5658937 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5659054 5659163 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5659281 5659468 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5659532 5659922 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5660214 5660521 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5660590 5660853 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5661090 5661281 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild exon 5661425 5661450 . - . gene_id "RvY_05314"; transcript_id "RvY_05314.1"; Scaffold002 rebuild transcript 5663773 5670488 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; gene_name "PROM"; annotation "prominin"; Pfam "[Tetraspannin] Tetraspanin family|[Prominin]"; KO "K06532"; Scaffold002 rebuild exon 5663773 5664031 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5666366 5666421 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5666571 5666776 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5666879 5666999 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5667127 5667193 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5667269 5667349 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5667427 5667641 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5667714 5667785 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5667868 5668014 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5668285 5668349 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5668417 5668569 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5668655 5668873 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5668947 5669193 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5669279 5669359 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5669433 5669663 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5669726 5669884 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5669955 5670076 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5670140 5670190 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild exon 5670272 5670488 . + . gene_id "RvY_05315"; transcript_id "RvY_05315.1"; Scaffold002 rebuild transcript 5671674 5675360 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; gene_name "RFC1"; annotation "putative Replication factor C subunit 1"; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[AAA] ATPase family associated with various cellular activities (AAA)|[RFC1] Replication factor RFC1 C terminal domain"; CDD "replication factor C large subunit; Provisional"; KO "K10754"; similar_genes "RFC1_HUMAN(e-value:3.3e-37;bit-score:153.0)"; Scaffold002 rebuild exon 5671674 5672036 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5672111 5672324 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5672394 5672539 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5672601 5673071 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5673175 5673312 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5673384 5673700 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5673779 5674048 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5674117 5674300 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5674380 5674538 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5674647 5674826 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5674891 5675019 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5675102 5675160 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5675265 5675295 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild exon 5675358 5675360 . - . gene_id "RvY_05316"; transcript_id "RvY_05316.1"; Scaffold002 rebuild transcript 5676259 5677881 . - . gene_id "RvY_05317"; transcript_id "RvY_05317.1"; gene_name "iscS"; annotation "Probable cysteine desulfurase, mitochondrial"; Pfam "[Beta_elim_lyase] Beta-eliminating lyase|[Aminotran_5] Aminotransferase class-V"; CDD "cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors."; EC "EC2.8.1.7"; KO "K04487"; similar_genes "NFS1_DROME(e-value:2.9e-178;bit-score:621.0)"; Scaffold002 rebuild exon 5676259 5676299 . - . gene_id "RvY_05317"; transcript_id "RvY_05317.1"; Scaffold002 rebuild exon 5676363 5676747 . - . gene_id "RvY_05317"; transcript_id "RvY_05317.1"; Scaffold002 rebuild exon 5676815 5677300 . - . gene_id "RvY_05317"; transcript_id "RvY_05317.1"; Scaffold002 rebuild exon 5677363 5677881 . - . gene_id "RvY_05317"; transcript_id "RvY_05317.1"; Scaffold002 rebuild transcript 5678391 5680520 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; annotation "Phosphate carrier protein, mitochondrial"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15102"; similar_genes "MPCP_PONAB(e-value:2.7e-132;bit-score:469.0)"; Scaffold002 rebuild exon 5678391 5678484 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5678548 5678622 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5678715 5678848 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5678926 5679105 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5679170 5679351 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5679540 5679712 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5679891 5680002 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5680269 5680361 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild exon 5680442 5680520 . + . gene_id "RvY_05318"; transcript_id "RvY_05318.1"; Scaffold002 rebuild transcript 5681060 5683170 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; gene_name "PDHB"; annotation "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial"; Pfam "[Transket_pyr] Transketolase, pyrimidine binding domain|[Transketolase_C] Transketolase, C-terminal domain"; CDD "pyruvate dehydrogenase subunit beta; Provisional"; EC "EC1.2.4.1"; KO "K00162"; similar_genes "ODPB_BOVIN(e-value:6.7e-129;bit-score:457.0)"; Scaffold002 rebuild exon 5681060 5681214 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5681293 5681434 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5681501 5681592 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5681661 5681771 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5681895 5682072 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5682152 5682259 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5682327 5682362 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5682420 5682482 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5682631 5682738 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5682900 5682989 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild exon 5683138 5683170 . - . gene_id "RvY_05319"; transcript_id "RvY_05319.1"; Scaffold002 rebuild transcript 5684031 5688704 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; gene_name "Unc112"; annotation "putative Fermitin family homolog 1"; Pfam "[PH]|[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain"; CDD "Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains."; similar_genes "FERM1_MOUSE(e-value:9.1e-29;bit-score:125.0)"; Scaffold002 rebuild exon 5684031 5684469 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5684531 5684755 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5684839 5685038 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5685190 5685384 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5685448 5685598 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5685681 5685855 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5686101 5686505 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5686993 5687272 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild exon 5688588 5688704 . - . gene_id "RvY_05320"; transcript_id "RvY_05320.1"; Scaffold002 rebuild transcript 5690270 5693048 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; gene_name "SLC27A1"; annotation "putative Long-chain fatty acid transport protein 4"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "acyl-CoA synthetase; Validated"; EC "EC6.2.1.-"; KO "K08745"; similar_genes "S27A4_MACFA(e-value:2.2e-40;bit-score:163.0)"; Scaffold002 rebuild exon 5690270 5690481 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5690553 5690795 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5690860 5691151 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5691225 5691417 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5691521 5691627 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5691729 5692065 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5692216 5692350 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5692411 5692575 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5692641 5692787 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild exon 5692888 5693048 . + . gene_id "RvY_05321"; transcript_id "RvY_05321.1"; Scaffold002 rebuild transcript 5693532 5696060 . - . gene_id "RvY_05322"; transcript_id "RvY_05322.1"; gene_name "COG1341"; annotation "hypothetical protein."; Pfam "[MobB] Molybdopterin guanine dinucleotide synthesis protein B|[Clp1] Pre-mRNA cleavage complex II protein Clp1"; CDD "Predicted GTPase or GTP-binding protein [General function prediction only]"; similar_genes "NOL9_MOUSE(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 5693532 5694575 . - . gene_id "RvY_05322"; transcript_id "RvY_05322.1"; Scaffold002 rebuild exon 5694726 5695609 . - . gene_id "RvY_05322"; transcript_id "RvY_05322.1"; Scaffold002 rebuild exon 5695784 5696060 . - . gene_id "RvY_05322"; transcript_id "RvY_05322.1"; Scaffold002 rebuild transcript 5696708 5696896 . - . gene_id "RvY_05323"; transcript_id "RvY_05323.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5696708 5696896 . - . gene_id "RvY_05323"; transcript_id "RvY_05323.1"; Scaffold002 rebuild transcript 5697336 5700093 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[ATG22] Vacuole effluxer Atg22 like"; CDD "monocarboxylate transporter 1."; Scaffold002 rebuild exon 5697336 5697490 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5697581 5697706 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5697855 5698041 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5698124 5698700 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5698859 5699192 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5699249 5699392 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5699619 5699776 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild exon 5699939 5700093 . - . gene_id "RvY_05324"; transcript_id "RvY_05324.1"; Scaffold002 rebuild transcript 5702169 5703202 . + . gene_id "RvY_05325"; transcript_id "RvY_05325.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5702169 5702372 . + . gene_id "RvY_05325"; transcript_id "RvY_05325.1"; Scaffold002 rebuild exon 5702699 5702821 . + . gene_id "RvY_05325"; transcript_id "RvY_05325.1"; Scaffold002 rebuild exon 5702927 5703202 . + . gene_id "RvY_05325"; transcript_id "RvY_05325.1"; Scaffold002 rebuild transcript 5703711 5708426 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; annotation "SEC14-like protein 1"; Pfam "[PRELI] PRELI-like family|[CRAL_TRIO_N] CRAL/TRIO, N-terminal domain|[CRAL_TRIO] CRAL/TRIO domain"; similar_genes "S14L1_HUMAN(e-value:3.8e-91;bit-score:332.0)"; Scaffold002 rebuild exon 5703711 5703759 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5703843 5704012 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5704081 5704308 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5704373 5704516 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5704585 5704768 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5704882 5705004 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5705082 5705152 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5705214 5705277 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5705361 5705385 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5705500 5705689 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5705816 5705881 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5705941 5705993 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5706479 5706839 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5707786 5707917 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5708000 5708149 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild exon 5708238 5708426 . - . gene_id "RvY_05326"; transcript_id "RvY_05326.1"; Scaffold002 rebuild transcript 5709429 5712829 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; gene_name "HSP90B"; annotation "Endoplasmin"; Pfam "[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[HSP90] Hsp90 protein|[HATPase_c_3] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase"; CDD "heat shock protein 90; Provisional"; KO "K09487"; similar_genes "ENPL_HUMAN(e-value:9.0e-80;bit-score:294.0)"; Scaffold002 rebuild exon 5709429 5709617 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5709682 5709883 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5709976 5710112 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5710182 5710596 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5710750 5710910 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5710980 5711057 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5711141 5711330 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5711391 5711684 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5711756 5711937 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5712033 5712176 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5712251 5712509 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5712581 5712704 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild exon 5712778 5712829 . - . gene_id "RvY_05327"; transcript_id "RvY_05327.1"; Scaffold002 rebuild transcript 5713620 5715196 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; annotation "hypothetical protein."; Pfam "[DUF3456] TLR4 regulator and MIR-interacting MSAP"; similar_genes "CREL1_RAT(e-value:3.3e-22;bit-score:103.0)"; Scaffold002 rebuild exon 5713620 5713772 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5713843 5713925 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5714000 5714060 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5714121 5714229 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5714308 5714396 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5714506 5714632 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5714705 5714890 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild exon 5714982 5715196 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.1"; Scaffold002 rebuild transcript 5713620 5715362 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; annotation "hypothetical protein."; Pfam "[DUF3456] TLR4 regulator and MIR-interacting MSAP"; similar_genes "CREL1_RAT(e-value:3.3e-22;bit-score:103.0)"; Scaffold002 rebuild exon 5713620 5713772 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5713843 5713925 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5714000 5714060 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5714121 5714229 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5714308 5714396 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5714506 5714632 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5714705 5714890 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild exon 5715247 5715362 . + . gene_id "RvY_05328"; transcript_id "RvY_05328.2"; Scaffold002 rebuild transcript 5715842 5717350 . - . gene_id "RvY_05329"; transcript_id "RvY_05329.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[F-box-like]|[F-box]"; Scaffold002 rebuild exon 5715842 5716682 . - . gene_id "RvY_05329"; transcript_id "RvY_05329.1"; Scaffold002 rebuild exon 5716758 5717350 . - . gene_id "RvY_05329"; transcript_id "RvY_05329.1"; Scaffold002 rebuild transcript 5719142 5720476 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; annotation "Alpha-aminoadipic semialdehyde synthase, mitochondrial"; Pfam "[AlaDh_PNT_C] Alanine dehydrogenase/PNT, C-terminal domain|[AlaDh_PNT_N] Alanine dehydrogenase/PNT, N-terminal domain"; EC "EC1.5.1.8"; similar_genes "AASS_BOVIN(e-value:5.2e-63;bit-score:238.0)"; Scaffold002 rebuild exon 5719142 5719272 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; Scaffold002 rebuild exon 5719327 5719438 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; Scaffold002 rebuild exon 5719496 5719772 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; Scaffold002 rebuild exon 5719899 5719954 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; Scaffold002 rebuild exon 5720026 5720251 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; Scaffold002 rebuild exon 5720331 5720476 . + . gene_id "RvY_05330"; transcript_id "RvY_05330.1"; Scaffold002 rebuild transcript 5720720 5723243 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; annotation "hypothetical protein."; Pfam "[Shikimate_DH] Shikimate / quinate 5-dehydrogenase|[Saccharop_dh] Saccharopine dehydrogenase|[Semialdhyde_dh] Semialdehyde dehydrogenase, NAD binding domain"; EC "EC1.5.1.8"; KO "K14157"; similar_genes "AASS_BOVIN(e-value:1.7e-21;bit-score:100.0)"; Scaffold002 rebuild exon 5720720 5720790 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5720901 5721012 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5721079 5721138 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5721223 5721421 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5721487 5721736 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5721804 5721912 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5722011 5722151 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5722247 5722513 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5722585 5722854 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5722929 5723089 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild exon 5723174 5723243 . + . gene_id "RvY_05331"; transcript_id "RvY_05331.1"; Scaffold002 rebuild transcript 5723460 5724448 . - . gene_id "RvY_05332"; transcript_id "RvY_05332.1"; gene_name "nitrobindin"; annotation "hypothetical protein."; Pfam "[DUF1794]"; CDD "nitrobindin heme-binding domain. Nitrobindin is a heme-containing lipocalin that may reversibly bind nitric oxide. This heme-binding domain forms a beta barrel structure, and in a small family of proteins from tetrapods, it is found C-terminal to a THAP zinc finger domain (a sequence-specific DNA binding domain). Members of this group are putatively related to fatty acid-binding proteins (FABPs)."; Scaffold002 rebuild exon 5723460 5723624 . - . gene_id "RvY_05332"; transcript_id "RvY_05332.1"; Scaffold002 rebuild exon 5723683 5723786 . - . gene_id "RvY_05332"; transcript_id "RvY_05332.1"; Scaffold002 rebuild exon 5723856 5724122 . - . gene_id "RvY_05332"; transcript_id "RvY_05332.1"; Scaffold002 rebuild exon 5724214 5724448 . - . gene_id "RvY_05332"; transcript_id "RvY_05332.1"; Scaffold002 rebuild transcript 5725495 5731356 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; gene_name "LIM_bind"; annotation "hypothetical protein."; Pfam "[LIM_bind] LIM-domain binding protein"; CDD "LIM-domain binding protein. The LIM-domain binding protein, binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions."; KO "K15617"; similar_genes "LDB2_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold002 rebuild exon 5725495 5725706 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5728279 5728417 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5728565 5728688 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5729663 5729835 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5729907 5730110 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5730173 5730302 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5730418 5730456 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5730572 5730783 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild exon 5731045 5731356 . + . gene_id "RvY_05333"; transcript_id "RvY_05333.1"; Scaffold002 rebuild transcript 5732096 5733743 . + . gene_id "RvY_05334"; transcript_id "RvY_05334.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5732096 5732523 . + . gene_id "RvY_05334"; transcript_id "RvY_05334.1"; Scaffold002 rebuild exon 5732613 5732858 . + . gene_id "RvY_05334"; transcript_id "RvY_05334.1"; Scaffold002 rebuild exon 5732939 5733052 . + . gene_id "RvY_05334"; transcript_id "RvY_05334.1"; Scaffold002 rebuild exon 5733122 5733743 . + . gene_id "RvY_05334"; transcript_id "RvY_05334.1"; Scaffold002 rebuild transcript 5733218 5734111 . - . gene_id "RvY_05335"; transcript_id "RvY_05335.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5733218 5733772 . - . gene_id "RvY_05335"; transcript_id "RvY_05335.1"; Scaffold002 rebuild exon 5734070 5734111 . - . gene_id "RvY_05335"; transcript_id "RvY_05335.1"; Scaffold002 rebuild transcript 5735072 5737676 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; gene_name "K01106"; annotation "inositol-1,4,5-trisphosphate 5-phosphatase [EC:3.1.3.56]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes."; EC "EC3.1.3.56"; KO "K01106"; similar_genes "I5P1_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 5735072 5735152 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5735245 5735286 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5735404 5735507 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5735579 5735666 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5735753 5735816 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5735920 5735951 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736053 5736130 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736207 5736259 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736316 5736379 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736439 5736494 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736576 5736657 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736725 5736835 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5736919 5736996 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5737096 5737166 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5737274 5737442 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild exon 5737509 5737676 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.1"; Scaffold002 rebuild transcript 5735072 5737856 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; gene_name "K01106"; annotation "inositol-1,4,5-trisphosphate 5-phosphatase [EC:3.1.3.56]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes."; EC "EC3.1.3.56"; KO "K01106"; similar_genes "I5P1_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 5735072 5735152 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5735245 5735286 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5735404 5735507 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5735579 5735666 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5735753 5735816 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5735920 5735951 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736053 5736130 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736207 5736259 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736316 5736379 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736439 5736494 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736576 5736657 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736725 5736835 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5736919 5736996 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5737096 5737166 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5737274 5737442 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5737509 5737625 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild exon 5737851 5737856 . + . gene_id "RvY_05336"; transcript_id "RvY_05336.2"; Scaffold002 rebuild transcript 5739131 5740286 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; annotation "hypothetical protein."; Pfam "[Bap31] B-cell receptor-associated protein 31-like"; KO "K14009"; Scaffold002 rebuild exon 5739131 5739222 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; Scaffold002 rebuild exon 5739337 5739434 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; Scaffold002 rebuild exon 5739541 5739697 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; Scaffold002 rebuild exon 5739787 5740007 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; Scaffold002 rebuild exon 5740065 5740165 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; Scaffold002 rebuild exon 5740236 5740286 . + . gene_id "RvY_05337"; transcript_id "RvY_05337.1"; Scaffold002 rebuild transcript 5740620 5741634 . - . gene_id "RvY_05338"; transcript_id "RvY_05338.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5740620 5740648 . - . gene_id "RvY_05338"; transcript_id "RvY_05338.1"; Scaffold002 rebuild exon 5740731 5741039 . - . gene_id "RvY_05338"; transcript_id "RvY_05338.1"; Scaffold002 rebuild exon 5741160 5741423 . - . gene_id "RvY_05338"; transcript_id "RvY_05338.1"; Scaffold002 rebuild exon 5741556 5741634 . - . gene_id "RvY_05338"; transcript_id "RvY_05338.1"; Scaffold002 rebuild transcript 5742435 5743644 . - . gene_id "RvY_05339"; transcript_id "RvY_05339.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5742435 5742537 . - . gene_id "RvY_05339"; transcript_id "RvY_05339.1"; Scaffold002 rebuild exon 5742611 5743644 . - . gene_id "RvY_05339"; transcript_id "RvY_05339.1"; Scaffold002 rebuild transcript 5742607 5743644 . - . gene_id "RvY_05339"; transcript_id "RvY_05339.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5742607 5743644 . - . gene_id "RvY_05339"; transcript_id "RvY_05339.2"; Scaffold002 rebuild transcript 5743712 5743924 . - . gene_id "RvY_05340"; transcript_id "RvY_05340.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5743712 5743924 . - . gene_id "RvY_05340"; transcript_id "RvY_05340.1"; Scaffold002 rebuild transcript 5744552 5747300 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; gene_name "SpoVK"; annotation "Fidgetin-like protein 1"; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.6.4.-"; similar_genes "FIGL1_RAT(e-value:1.1e-56;bit-score:217.0)"; Scaffold002 rebuild exon 5744552 5744880 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5744942 5745084 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5745153 5745280 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5745352 5746040 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5746120 5746164 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5746231 5746376 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5746653 5747108 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild exon 5747176 5747300 . + . gene_id "RvY_05341"; transcript_id "RvY_05341.1"; Scaffold002 rebuild transcript 5747829 5750611 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; annotation "Protein ST7 homolog"; Pfam "[ST7] ST7 protein"; similar_genes "(1)ST7_DROME(e-value:5.6e-88;bit-score:321.0)(2)ST7_DROME(e-value:3.6e-68;bit-score:256.0)"; Scaffold002 rebuild exon 5747829 5747924 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5748022 5748254 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5748339 5748489 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5748558 5748620 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5748745 5748784 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5748883 5748964 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5749023 5749131 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5749227 5749324 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5749390 5749538 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5749634 5749712 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5749766 5749864 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5749987 5750058 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5750142 5750289 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5750402 5750484 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild exon 5750593 5750611 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.1"; Scaffold002 rebuild transcript 5747829 5750611 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; annotation "Protein ST7 homolog"; Pfam "[ST7] ST7 protein"; similar_genes "(1)ST7_DROME(e-value:5.6e-88;bit-score:321.0)(2)ST7_DROME(e-value:3.6e-68;bit-score:256.0)"; Scaffold002 rebuild exon 5747829 5747924 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5748022 5748254 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5748339 5748489 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5748558 5748620 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5748745 5748784 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5748898 5748964 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5749023 5749131 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5749227 5749324 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5749390 5749538 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5749634 5749712 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5749766 5749864 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5749987 5750058 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5750142 5750289 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5750402 5750484 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild exon 5750593 5750611 . - . gene_id "RvY_05342"; transcript_id "RvY_05342.2"; Scaffold002 rebuild transcript 5751071 5752267 . + . gene_id "RvY_05343"; transcript_id "RvY_05343.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5751071 5751184 . + . gene_id "RvY_05343"; transcript_id "RvY_05343.1"; Scaffold002 rebuild exon 5751270 5751547 . + . gene_id "RvY_05343"; transcript_id "RvY_05343.1"; Scaffold002 rebuild exon 5751622 5751684 . + . gene_id "RvY_05343"; transcript_id "RvY_05343.1"; Scaffold002 rebuild exon 5751759 5751999 . + . gene_id "RvY_05343"; transcript_id "RvY_05343.1"; Scaffold002 rebuild exon 5752061 5752267 . + . gene_id "RvY_05343"; transcript_id "RvY_05343.1"; Scaffold002 rebuild transcript 5753103 5754928 . + . gene_id "RvY_05344"; transcript_id "RvY_05344.1"; gene_name "EARS"; annotation "putative Probable glutamyl-tRNA synthetase, mitochondrial"; Pfam "[tRNA-synt_1c] tRNA synthetases class I (E and Q), catalytic domain"; CDD "glutamyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.17"; KO "K01885"; similar_genes "SYEM_HUMAN(e-value:5.4e-50;bit-score:195.0)"; Scaffold002 rebuild exon 5753103 5753376 . + . gene_id "RvY_05344"; transcript_id "RvY_05344.1"; Scaffold002 rebuild exon 5753454 5753596 . + . gene_id "RvY_05344"; transcript_id "RvY_05344.1"; Scaffold002 rebuild exon 5753692 5754318 . + . gene_id "RvY_05344"; transcript_id "RvY_05344.1"; Scaffold002 rebuild exon 5754374 5754928 . + . gene_id "RvY_05344"; transcript_id "RvY_05344.1"; Scaffold002 rebuild transcript 5755210 5757109 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; gene_name "UAP56"; annotation "ATP-dependent RNA helicase DDX39"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K12812"; similar_genes "DDX39_MOUSE(e-value:3.9e-182;bit-score:634.0)"; Scaffold002 rebuild exon 5755210 5755445 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5755516 5755694 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5755758 5755894 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5755988 5756152 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5756216 5756405 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5756490 5756577 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5756655 5756735 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild exon 5756887 5757109 . - . gene_id "RvY_05345"; transcript_id "RvY_05345.1"; Scaffold002 rebuild transcript 5758100 5759543 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; gene_name "PTZ00168"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; CDD "mitochondrial carrier protein; Provisional"; KO "K15111"; similar_genes "SAMC_MOUSE(e-value:2.5e-22;bit-score:103.0)"; Scaffold002 rebuild exon 5758100 5758159 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5758286 5758442 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5758541 5758659 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5758760 5758861 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5758930 5759022 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5759083 5759217 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5759281 5759354 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild exon 5759417 5759543 . + . gene_id "RvY_05346"; transcript_id "RvY_05346.1"; Scaffold002 rebuild transcript 5761164 5770306 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5761164 5761689 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.1"; Scaffold002 rebuild exon 5762400 5762538 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.1"; Scaffold002 rebuild exon 5762782 5762924 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.1"; Scaffold002 rebuild exon 5763583 5763715 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.1"; Scaffold002 rebuild exon 5770183 5770306 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.1"; Scaffold002 rebuild transcript 5761164 5764288 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5761164 5761689 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.2"; Scaffold002 rebuild exon 5762400 5762538 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.2"; Scaffold002 rebuild exon 5762782 5762924 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.2"; Scaffold002 rebuild exon 5763583 5763715 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.2"; Scaffold002 rebuild exon 5764177 5764288 . - . gene_id "RvY_05347"; transcript_id "RvY_05347.2"; Scaffold002 rebuild transcript 5763513 5763734 . + . gene_id "RvY_05348"; transcript_id "RvY_05348.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5763513 5763734 . + . gene_id "RvY_05348"; transcript_id "RvY_05348.1"; Scaffold002 rebuild transcript 5764411 5764713 . + . gene_id "RvY_05349"; transcript_id "RvY_05349.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5764411 5764713 . + . gene_id "RvY_05349"; transcript_id "RvY_05349.1"; Scaffold002 rebuild transcript 5770479 5770751 . + . gene_id "RvY_05350"; transcript_id "RvY_05350.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5770479 5770751 . + . gene_id "RvY_05350"; transcript_id "RvY_05350.1"; Scaffold002 rebuild transcript 5774373 5774737 . - . gene_id "RvY_05351"; transcript_id "RvY_05351.1"; gene_name "ATPeVH"; annotation "V-type H+-transporting ATPase subunit H [EC:3.6.3.14]"; Pfam "[ATP_synt_H] ATP synthase subunit H"; EC "EC3.6.3.14"; KO "K02153"; similar_genes "VA0E2_RAT(e-value:5.5e-16;bit-score:82.0)"; Scaffold002 rebuild exon 5774373 5774466 . - . gene_id "RvY_05351"; transcript_id "RvY_05351.1"; Scaffold002 rebuild exon 5774534 5774581 . - . gene_id "RvY_05351"; transcript_id "RvY_05351.1"; Scaffold002 rebuild exon 5774643 5774737 . - . gene_id "RvY_05351"; transcript_id "RvY_05351.1"; Scaffold002 rebuild transcript 5775385 5776512 . - . gene_id "RvY_05352"; transcript_id "RvY_05352.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5775385 5775649 . - . gene_id "RvY_05352"; transcript_id "RvY_05352.1"; Scaffold002 rebuild exon 5775713 5775972 . - . gene_id "RvY_05352"; transcript_id "RvY_05352.1"; Scaffold002 rebuild exon 5776074 5776294 . - . gene_id "RvY_05352"; transcript_id "RvY_05352.1"; Scaffold002 rebuild exon 5776365 5776512 . - . gene_id "RvY_05352"; transcript_id "RvY_05352.1"; Scaffold002 rebuild transcript 5777537 5779468 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; gene_name "euk_LANCL"; annotation "hypothetical protein."; Pfam "[LANC_like] Lanthionine synthetase C-like protein"; CDD "eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs."; similar_genes "LANC2_MOUSE(e-value:1.0e-12;bit-score:71.0)"; Scaffold002 rebuild exon 5777537 5777654 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5777727 5777889 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5777983 5778093 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5778171 5778371 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5778439 5778568 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5778633 5778857 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5778938 5779272 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild exon 5779390 5779468 . - . gene_id "RvY_05353"; transcript_id "RvY_05353.1"; Scaffold002 rebuild transcript 5780759 5782203 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5780759 5780842 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5780932 5781024 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5781125 5781226 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5781292 5781372 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5781458 5781632 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5781749 5781890 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5781992 5782067 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild exon 5782135 5782203 . + . gene_id "RvY_05354"; transcript_id "RvY_05354.1"; Scaffold002 rebuild transcript 5782788 5783399 . + . gene_id "RvY_05355"; transcript_id "RvY_05355.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5782788 5782910 . + . gene_id "RvY_05355"; transcript_id "RvY_05355.1"; Scaffold002 rebuild exon 5783138 5783221 . + . gene_id "RvY_05355"; transcript_id "RvY_05355.1"; Scaffold002 rebuild exon 5783301 5783399 . + . gene_id "RvY_05355"; transcript_id "RvY_05355.1"; Scaffold002 rebuild transcript 5784939 5786788 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5784939 5785008 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; Scaffold002 rebuild exon 5785124 5785244 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; Scaffold002 rebuild exon 5785404 5785466 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; Scaffold002 rebuild exon 5785536 5785612 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; Scaffold002 rebuild exon 5785738 5786003 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; Scaffold002 rebuild exon 5786573 5786788 . + . gene_id "RvY_05356"; transcript_id "RvY_05356.1"; Scaffold002 rebuild transcript 5787398 5787775 . - . gene_id "RvY_05357"; transcript_id "RvY_05357.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5787398 5787775 . - . gene_id "RvY_05357"; transcript_id "RvY_05357.1"; Scaffold002 rebuild transcript 5788330 5790989 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5788330 5788405 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; Scaffold002 rebuild exon 5789820 5789877 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; Scaffold002 rebuild exon 5789959 5790039 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; Scaffold002 rebuild exon 5790181 5790313 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; Scaffold002 rebuild exon 5790412 5790557 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; Scaffold002 rebuild exon 5790755 5790989 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.1"; Scaffold002 rebuild transcript 5790444 5791078 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5790444 5790557 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.2"; Scaffold002 rebuild exon 5790755 5791078 . + . gene_id "RvY_05358"; transcript_id "RvY_05358.2"; Scaffold002 rebuild transcript 5791462 5792138 . - . gene_id "RvY_05359"; transcript_id "RvY_05359.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5791462 5792034 . - . gene_id "RvY_05359"; transcript_id "RvY_05359.1"; Scaffold002 rebuild exon 5792100 5792138 . - . gene_id "RvY_05359"; transcript_id "RvY_05359.1"; Scaffold002 rebuild transcript 5794268 5795646 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; annotation "hypothetical protein."; Pfam "[MARVEL] Membrane-associating domain"; Scaffold002 rebuild exon 5794268 5794429 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; Scaffold002 rebuild exon 5794635 5794835 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; Scaffold002 rebuild exon 5794917 5795115 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; Scaffold002 rebuild exon 5795207 5795334 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; Scaffold002 rebuild exon 5795444 5795509 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; Scaffold002 rebuild exon 5795632 5795646 . - . gene_id "RvY_05360"; transcript_id "RvY_05360.1"; Scaffold002 rebuild transcript 5795893 5796237 . - . gene_id "RvY_05361"; transcript_id "RvY_05361.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5795893 5796237 . - . gene_id "RvY_05361"; transcript_id "RvY_05361.1"; Scaffold002 rebuild transcript 5796393 5797607 . + . gene_id "RvY_05362"; transcript_id "RvY_05362.1"; gene_name "PSMA5"; annotation "putative Proteasome subunit alpha type-5"; Pfam "[Proteasome_A_N] Proteasome subunit A N-terminal signature|[Proteasome] Proteasome subunit"; CDD "proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02729"; similar_genes "PSA5_HUMAN(e-value:7.1e-50;bit-score:195.0)"; Scaffold002 rebuild exon 5796393 5796488 . + . gene_id "RvY_05362"; transcript_id "RvY_05362.1"; Scaffold002 rebuild exon 5796667 5796793 . + . gene_id "RvY_05362"; transcript_id "RvY_05362.1"; Scaffold002 rebuild exon 5796914 5797130 . + . gene_id "RvY_05362"; transcript_id "RvY_05362.1"; Scaffold002 rebuild exon 5797209 5797398 . + . gene_id "RvY_05362"; transcript_id "RvY_05362.1"; Scaffold002 rebuild exon 5797527 5797607 . + . gene_id "RvY_05362"; transcript_id "RvY_05362.1"; Scaffold002 rebuild transcript 5797956 5800097 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; annotation "hypothetical protein."; KO "K15179"; similar_genes "NELFA_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 5797956 5798152 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5798270 5798369 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5798447 5798685 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5798757 5799089 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5799155 5799247 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5799308 5799597 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5799747 5799802 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild exon 5799891 5800097 . - . gene_id "RvY_05363"; transcript_id "RvY_05363.1"; Scaffold002 rebuild transcript 5799913 5803412 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5799913 5800004 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.1"; Scaffold002 rebuild exon 5802973 5803129 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.1"; Scaffold002 rebuild exon 5803217 5803278 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.1"; Scaffold002 rebuild exon 5803391 5803412 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.1"; Scaffold002 rebuild transcript 5802829 5803218 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5802829 5803129 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.2"; Scaffold002 rebuild exon 5803217 5803218 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.2"; Scaffold002 rebuild transcript 5803095 5803734 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5803095 5803129 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.3"; Scaffold002 rebuild exon 5803217 5803278 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.3"; Scaffold002 rebuild exon 5803391 5803508 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.3"; Scaffold002 rebuild exon 5803668 5803734 . + . gene_id "RvY_05364"; transcript_id "RvY_05364.3"; Scaffold002 rebuild transcript 5803831 5807088 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; gene_name "betA"; annotation "choline dehydrogenase [EC:1.1.99.1]"; Pfam "[GMC_oxred_C] GMC oxidoreductase|[GMC_oxred_N] GMC oxidoreductase"; CDD "Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]"; EC "EC1.1.99.1|EC1.1.99.10"; KO "K00108"; similar_genes "DHGL_DROME(e-value:1.2e-13;bit-score:74.0)"; Scaffold002 rebuild exon 5803831 5803952 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5804037 5804098 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5804179 5804404 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5804511 5804694 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5804788 5804954 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5805059 5805212 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5805291 5805589 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5805669 5805821 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5805911 5806100 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5806239 5806444 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild exon 5806929 5807088 . - . gene_id "RvY_05365"; transcript_id "RvY_05365.1"; Scaffold002 rebuild transcript 5806054 5807029 . + . gene_id "RvY_05366"; transcript_id "RvY_05366.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5806054 5806124 . + . gene_id "RvY_05366"; transcript_id "RvY_05366.1"; Scaffold002 rebuild exon 5806251 5806464 . + . gene_id "RvY_05366"; transcript_id "RvY_05366.1"; Scaffold002 rebuild exon 5806763 5807029 . + . gene_id "RvY_05366"; transcript_id "RvY_05366.1"; Scaffold002 rebuild transcript 5808924 5810862 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5808924 5809243 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; Scaffold002 rebuild exon 5809446 5809617 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; Scaffold002 rebuild exon 5809732 5809982 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; Scaffold002 rebuild exon 5810040 5810186 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; Scaffold002 rebuild exon 5810259 5810604 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; Scaffold002 rebuild exon 5810776 5810862 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.1"; Scaffold002 rebuild transcript 5808924 5810862 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5808924 5809243 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; Scaffold002 rebuild exon 5809446 5809617 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; Scaffold002 rebuild exon 5809732 5809982 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; Scaffold002 rebuild exon 5810040 5810186 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; Scaffold002 rebuild exon 5810259 5810604 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; Scaffold002 rebuild exon 5810779 5810862 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.2"; Scaffold002 rebuild transcript 5809222 5810862 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5809222 5809243 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; Scaffold002 rebuild exon 5809445 5809617 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; Scaffold002 rebuild exon 5809732 5809982 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; Scaffold002 rebuild exon 5810040 5810186 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; Scaffold002 rebuild exon 5810259 5810604 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; Scaffold002 rebuild exon 5810776 5810862 . - . gene_id "RvY_05367"; transcript_id "RvY_05367.3"; Scaffold002 rebuild transcript 5811679 5811941 . - . gene_id "RvY_05368"; transcript_id "RvY_05368.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5811679 5811808 . - . gene_id "RvY_05368"; transcript_id "RvY_05368.1"; Scaffold002 rebuild exon 5811901 5811941 . - . gene_id "RvY_05368"; transcript_id "RvY_05368.1"; Scaffold002 rebuild transcript 5812078 5816414 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; gene_name "BRPF1"; annotation "putative Peregrin"; Pfam "[zf-HC5HC2H_2] PHD-zinc-finger like domain|[zf-HC5HC2H] PHD-like zinc-binding domain|[PHD] PHD-finger|[PHD_2] PHD-finger|[Bromodomain]"; CDD "PHD zinc finger-containing protein [General function prediction only]"; KO "K11348"; similar_genes "BRPF1_HUMAN(e-value:2.4e-48;bit-score:190.0)"; Scaffold002 rebuild exon 5812078 5812205 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5812287 5812566 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5812631 5812747 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5812834 5812962 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5813028 5813322 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5813384 5813684 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5813767 5813917 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5814021 5814140 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5814220 5814540 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5814607 5814802 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5815050 5815409 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5815475 5815719 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5815803 5815951 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild exon 5816210 5816414 . + . gene_id "RvY_05369"; transcript_id "RvY_05369.1"; Scaffold002 rebuild transcript 5817465 5820987 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; gene_name "CysPc"; annotation "hypothetical protein."; Pfam "[Peptidase_C2] Calpain family cysteine protease|[Calpain_III] Calpain large subunit, domain III"; CDD "Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction."; similar_genes "CANC_DROME(e-value:5.1e-25;bit-score:112.0)"; Scaffold002 rebuild exon 5817465 5817620 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5817689 5817882 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5818078 5818099 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5818160 5818272 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5818395 5818422 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5818506 5818649 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5818718 5818944 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5819022 5819089 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5819166 5819221 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5819291 5819458 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5819521 5819650 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5819720 5819971 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5820120 5820178 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5820238 5820306 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5820385 5820457 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5820608 5820724 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5820815 5820873 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild exon 5820961 5820987 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.1"; Scaffold002 rebuild transcript 5817465 5820888 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; gene_name "CysPc"; annotation "hypothetical protein."; Pfam "[Peptidase_C2] Calpain family cysteine protease|[Calpain_III] Calpain large subunit, domain III"; CDD "Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction."; similar_genes "CANC_DROME(e-value:5.1e-25;bit-score:112.0)"; Scaffold002 rebuild exon 5817465 5817620 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5817689 5817882 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5818078 5818099 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5818160 5818272 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5818395 5818422 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5818506 5818649 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5818718 5818944 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5819022 5819089 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5819166 5819221 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5819291 5819458 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5819521 5819650 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5819720 5819971 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5820120 5820178 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5820238 5820306 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5820385 5820457 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5820608 5820724 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild exon 5820815 5820888 . + . gene_id "RvY_05370"; transcript_id "RvY_05370.2"; Scaffold002 rebuild transcript 5821602 5823495 . - . gene_id "RvY_05371"; transcript_id "RvY_05371.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5821602 5821712 . - . gene_id "RvY_05371"; transcript_id "RvY_05371.1"; Scaffold002 rebuild exon 5822115 5822483 . - . gene_id "RvY_05371"; transcript_id "RvY_05371.1"; Scaffold002 rebuild exon 5823472 5823495 . - . gene_id "RvY_05371"; transcript_id "RvY_05371.1"; Scaffold002 rebuild transcript 5825609 5829027 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[Katanin_con80] con80 domain of Katanin|[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "KTNB1_STRPU(e-value:5.6e-20;bit-score:95.0)"; Scaffold002 rebuild exon 5825609 5825700 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5825766 5825928 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5826200 5826262 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5826337 5826625 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5826955 5827484 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5827739 5828383 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5828560 5828828 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild exon 5828889 5829027 . + . gene_id "RvY_05372"; transcript_id "RvY_05372.1"; Scaffold002 rebuild transcript 5829231 5831160 . - . gene_id "RvY_05373"; transcript_id "RvY_05373.1"; annotation "putative Protein notum homolog"; Pfam "[PAE] Pectinacetylesterase"; EC "EC3.-.-.-"; similar_genes "NOTUM_MOUSE(e-value:7.7e-26;bit-score:115.0)"; Scaffold002 rebuild exon 5829231 5829822 . - . gene_id "RvY_05373"; transcript_id "RvY_05373.1"; Scaffold002 rebuild exon 5829879 5830466 . - . gene_id "RvY_05373"; transcript_id "RvY_05373.1"; Scaffold002 rebuild exon 5830565 5830774 . - . gene_id "RvY_05373"; transcript_id "RvY_05373.1"; Scaffold002 rebuild exon 5830865 5831160 . - . gene_id "RvY_05373"; transcript_id "RvY_05373.1"; Scaffold002 rebuild transcript 5832761 5832982 . + . gene_id "RvY_05374"; transcript_id "RvY_05374.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5832761 5832982 . + . gene_id "RvY_05374"; transcript_id "RvY_05374.1"; Scaffold002 rebuild transcript 5833573 5834860 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.1"; gene_name "(1,2)PRDX(3)PRX_Typ2cys"; annotation "Peroxiredoxin-1"; Pfam "[AhpC-TSA] AhpC/TSA family|(1,2)[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold002 rebuild exon 5833573 5833652 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.1"; Scaffold002 rebuild exon 5833754 5834016 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.1"; Scaffold002 rebuild exon 5834499 5834860 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.1"; Scaffold002 rebuild transcript 5833573 5834842 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.2"; gene_name "(1,2)PRDX(3)PRX_Typ2cys"; annotation "Peroxiredoxin-1"; Pfam "[AhpC-TSA] AhpC/TSA family|(1,2)[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold002 rebuild exon 5833573 5833652 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.2"; Scaffold002 rebuild exon 5833754 5834016 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.2"; Scaffold002 rebuild exon 5834499 5834842 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.2"; Scaffold002 rebuild transcript 5833722 5834860 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.3"; gene_name "(1,2)PRDX(3)PRX_Typ2cys"; annotation "Peroxiredoxin-1"; Pfam "[AhpC-TSA] AhpC/TSA family|(1,2)[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold002 rebuild exon 5833722 5834016 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.3"; Scaffold002 rebuild exon 5834499 5834860 . - . gene_id "RvY_05375"; transcript_id "RvY_05375.3"; Scaffold002 rebuild transcript 5835535 5836787 . - . gene_id "RvY_05376"; transcript_id "RvY_05376.1"; gene_name "PRDX"; annotation "Peroxiredoxin-2"; Pfam "[AhpC-TSA] AhpC/TSA family|[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold002 rebuild exon 5835535 5835620 . - . gene_id "RvY_05376"; transcript_id "RvY_05376.1"; Scaffold002 rebuild exon 5835828 5836006 . - . gene_id "RvY_05376"; transcript_id "RvY_05376.1"; Scaffold002 rebuild exon 5836361 5836444 . - . gene_id "RvY_05376"; transcript_id "RvY_05376.1"; Scaffold002 rebuild exon 5836522 5836787 . - . gene_id "RvY_05376"; transcript_id "RvY_05376.1"; Scaffold002 rebuild transcript 5839807 5841531 . + . gene_id "RvY_05377"; transcript_id "RvY_05377.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C78] Peptidase family C78"; Scaffold002 rebuild exon 5839807 5840119 . + . gene_id "RvY_05377"; transcript_id "RvY_05377.1"; Scaffold002 rebuild exon 5840187 5840414 . + . gene_id "RvY_05377"; transcript_id "RvY_05377.1"; Scaffold002 rebuild exon 5840487 5841004 . + . gene_id "RvY_05377"; transcript_id "RvY_05377.1"; Scaffold002 rebuild exon 5841058 5841531 . + . gene_id "RvY_05377"; transcript_id "RvY_05377.1"; Scaffold002 rebuild transcript 5842045 5843209 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; gene_name "hemF"; annotation "Coproporphyrinogen-III oxidase, mitochondrial"; Pfam "[Coprogen_oxidas] Coproporphyrinogen III oxidase"; CDD "coproporphyrinogen III oxidase; Provisional"; EC "EC1.3.3.3"; KO "K00228"; similar_genes "HEM6_HUMAN(e-value:8.2e-68;bit-score:254.0)"; Scaffold002 rebuild exon 5842045 5842102 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild exon 5842186 5842292 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild exon 5842411 5842490 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild exon 5842582 5842693 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild exon 5842760 5842885 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild exon 5842953 5843092 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild exon 5843176 5843209 . - . gene_id "RvY_05378"; transcript_id "RvY_05378.1"; Scaffold002 rebuild transcript 5844772 5846596 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|(1)[U-box]|(1)[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 5844772 5845052 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild exon 5845123 5845350 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild exon 5845427 5845585 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild exon 5845655 5845704 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild exon 5845776 5845953 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild exon 5846022 5846362 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild exon 5846421 5846596 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.1"; Scaffold002 rebuild transcript 5844772 5846400 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|(1)[U-box]|(1)[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 5844772 5845052 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; Scaffold002 rebuild exon 5845123 5845350 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; Scaffold002 rebuild exon 5845427 5845585 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; Scaffold002 rebuild exon 5845655 5845704 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; Scaffold002 rebuild exon 5845776 5845953 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; Scaffold002 rebuild exon 5846022 5846400 . + . gene_id "RvY_05379"; transcript_id "RvY_05379.2"; Scaffold002 rebuild transcript 5846947 5849329 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; gene_name "SLC22A7"; annotation "MFS transporter, OCT family, solute carrier family 22 (organic anion transporter), member 7"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; KO "K08204"; Scaffold002 rebuild exon 5846947 5847294 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild exon 5847482 5848347 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild exon 5848452 5848503 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild exon 5848564 5848887 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild exon 5848954 5849006 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild exon 5849088 5849165 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild exon 5849299 5849329 . - . gene_id "RvY_05380"; transcript_id "RvY_05380.1"; Scaffold002 rebuild transcript 5850173 5851809 . - . gene_id "RvY_05381"; transcript_id "RvY_05381.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5850173 5850553 . - . gene_id "RvY_05381"; transcript_id "RvY_05381.1"; Scaffold002 rebuild exon 5850639 5850865 . - . gene_id "RvY_05381"; transcript_id "RvY_05381.1"; Scaffold002 rebuild exon 5850938 5851207 . - . gene_id "RvY_05381"; transcript_id "RvY_05381.1"; Scaffold002 rebuild exon 5851278 5851686 . - . gene_id "RvY_05381"; transcript_id "RvY_05381.1"; Scaffold002 rebuild exon 5851783 5851809 . - . gene_id "RvY_05381"; transcript_id "RvY_05381.1"; Scaffold002 rebuild transcript 5852540 5854198 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5852540 5852866 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild exon 5852925 5853170 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild exon 5853250 5853391 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild exon 5853532 5853596 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild exon 5853668 5853764 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild exon 5853842 5854005 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild exon 5854085 5854198 . + . gene_id "RvY_05382"; transcript_id "RvY_05382.1"; Scaffold002 rebuild transcript 5854595 5856797 . - . gene_id "RvY_05383"; transcript_id "RvY_05383.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5854595 5855143 . - . gene_id "RvY_05383"; transcript_id "RvY_05383.1"; Scaffold002 rebuild exon 5855213 5855429 . - . gene_id "RvY_05383"; transcript_id "RvY_05383.1"; Scaffold002 rebuild exon 5855546 5855922 . - . gene_id "RvY_05383"; transcript_id "RvY_05383.1"; Scaffold002 rebuild exon 5856060 5856373 . - . gene_id "RvY_05383"; transcript_id "RvY_05383.1"; Scaffold002 rebuild exon 5856542 5856797 . - . gene_id "RvY_05383"; transcript_id "RvY_05383.1"; Scaffold002 rebuild transcript 5857971 5859066 . + . gene_id "RvY_05384"; transcript_id "RvY_05384.1"; gene_name "mdh"; annotation "Malate dehydrogenase, mitochondrial"; Pfam "[Ldh_1_N] lactate/malate dehydrogenase, NAD binding domain|[Ldh_1_C] lactate/malate dehydrogenase, alpha/beta C-terminal domain|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; CDD "Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others."; EC "EC1.1.1.37"; KO "K00026"; similar_genes "MDHM_PONAB(e-value:6.9e-116;bit-score:414.0)"; Scaffold002 rebuild exon 5857971 5858304 . + . gene_id "RvY_05384"; transcript_id "RvY_05384.1"; Scaffold002 rebuild exon 5858360 5859066 . + . gene_id "RvY_05384"; transcript_id "RvY_05384.1"; Scaffold002 rebuild transcript 5859517 5861135 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; gene_name "RCD1"; annotation "putative Cell differentiation protein rcd1"; Pfam "[Rcd1] Cell differentiation family, Rcd1-like"; KO "K12606"; similar_genes "RCD1_SCHPO(e-value:1.9e-39;bit-score:160.0)"; Scaffold002 rebuild exon 5859517 5859760 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5859858 5859955 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5860040 5860138 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5860222 5860310 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5860379 5860501 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5860568 5860776 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5860842 5860924 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild exon 5861103 5861135 . - . gene_id "RvY_05385"; transcript_id "RvY_05385.1"; Scaffold002 rebuild transcript 5861548 5862191 . + . gene_id "RvY_05386"; transcript_id "RvY_05386.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5861548 5861647 . + . gene_id "RvY_05386"; transcript_id "RvY_05386.1"; Scaffold002 rebuild exon 5861770 5862191 . + . gene_id "RvY_05386"; transcript_id "RvY_05386.1"; Scaffold002 rebuild transcript 5863032 5863418 . - . gene_id "RvY_05387"; transcript_id "RvY_05387.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5863032 5863242 . - . gene_id "RvY_05387"; transcript_id "RvY_05387.1"; Scaffold002 rebuild exon 5863279 5863418 . - . gene_id "RvY_05387"; transcript_id "RvY_05387.1"; Scaffold002 rebuild transcript 5863549 5863833 . - . gene_id "RvY_05388"; transcript_id "RvY_05388.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5863549 5863833 . - . gene_id "RvY_05388"; transcript_id "RvY_05388.1"; Scaffold002 rebuild transcript 5865460 5865645 . + . gene_id "RvY_05389"; transcript_id "RvY_05389.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5865460 5865645 . + . gene_id "RvY_05389"; transcript_id "RvY_05389.1"; Scaffold002 rebuild transcript 5875810 5876646 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5875810 5875847 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.1"; Scaffold002 rebuild exon 5875992 5876369 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.1"; Scaffold002 rebuild exon 5876448 5876646 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.1"; Scaffold002 rebuild transcript 5875942 5876646 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5875942 5876369 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.2"; Scaffold002 rebuild exon 5876505 5876646 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.2"; Scaffold002 rebuild transcript 5875340 5875828 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5875340 5875828 . - . gene_id "RvY_05390"; transcript_id "RvY_05390.3"; Scaffold002 rebuild transcript 5876694 5877308 . - . gene_id "RvY_05391"; transcript_id "RvY_05391.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5876694 5876714 . - . gene_id "RvY_05391"; transcript_id "RvY_05391.1"; Scaffold002 rebuild exon 5876744 5876918 . - . gene_id "RvY_05391"; transcript_id "RvY_05391.1"; Scaffold002 rebuild exon 5877154 5877308 . - . gene_id "RvY_05391"; transcript_id "RvY_05391.1"; Scaffold002 rebuild transcript 5881177 5881560 . + . gene_id "RvY_05392"; transcript_id "RvY_05392.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5881177 5881560 . + . gene_id "RvY_05392"; transcript_id "RvY_05392.1"; Scaffold002 rebuild transcript 5882734 5885101 . - . gene_id "RvY_05393"; transcript_id "RvY_05393.1"; gene_name "DYRK"; annotation "Dual specificity tyrosine-phosphorylation-regulated kinase 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.12.1"; KO "K08825"; similar_genes "DYRK2_HUMAN(e-value:2.5e-158;bit-score:555.0)"; Scaffold002 rebuild exon 5882734 5883044 . - . gene_id "RvY_05393"; transcript_id "RvY_05393.1"; Scaffold002 rebuild exon 5883303 5883630 . - . gene_id "RvY_05393"; transcript_id "RvY_05393.1"; Scaffold002 rebuild exon 5883975 5884599 . - . gene_id "RvY_05393"; transcript_id "RvY_05393.1"; Scaffold002 rebuild exon 5884878 5885101 . - . gene_id "RvY_05393"; transcript_id "RvY_05393.1"; Scaffold002 rebuild transcript 5888901 5889149 . - . gene_id "RvY_05394"; transcript_id "RvY_05394.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5888901 5889149 . - . gene_id "RvY_05394"; transcript_id "RvY_05394.1"; Scaffold002 rebuild transcript 5889485 5889940 . + . gene_id "RvY_05395"; transcript_id "RvY_05395.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5889485 5889940 . + . gene_id "RvY_05395"; transcript_id "RvY_05395.1"; Scaffold002 rebuild transcript 5892137 5892400 . + . gene_id "RvY_05396"; transcript_id "RvY_05396.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5892137 5892400 . + . gene_id "RvY_05396"; transcript_id "RvY_05396.1"; Scaffold002 rebuild transcript 5893067 5893282 . + . gene_id "RvY_05397"; transcript_id "RvY_05397.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5893067 5893282 . + . gene_id "RvY_05397"; transcript_id "RvY_05397.1"; Scaffold002 rebuild transcript 5895443 5896444 . - . gene_id "RvY_05398"; transcript_id "RvY_05398.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5895443 5895561 . - . gene_id "RvY_05398"; transcript_id "RvY_05398.1"; Scaffold002 rebuild exon 5896366 5896444 . - . gene_id "RvY_05398"; transcript_id "RvY_05398.1"; Scaffold002 rebuild transcript 5898376 5898693 . - . gene_id "RvY_05399"; transcript_id "RvY_05399.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5898376 5898693 . - . gene_id "RvY_05399"; transcript_id "RvY_05399.1"; Scaffold002 rebuild transcript 5898379 5898693 . - . gene_id "RvY_05399"; transcript_id "RvY_05399.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5898379 5898693 . - . gene_id "RvY_05399"; transcript_id "RvY_05399.2"; Scaffold002 rebuild transcript 5900192 5902046 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[MTS] Methyltransferase small domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain"; Scaffold002 rebuild exon 5900192 5900213 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.1"; Scaffold002 rebuild exon 5900544 5900643 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.1"; Scaffold002 rebuild exon 5901196 5901656 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.1"; Scaffold002 rebuild exon 5901773 5901844 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.1"; Scaffold002 rebuild exon 5901922 5902046 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.1"; Scaffold002 rebuild transcript 5900540 5902046 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.2"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[MTS] Methyltransferase small domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain"; Scaffold002 rebuild exon 5900540 5900643 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.2"; Scaffold002 rebuild exon 5901196 5901656 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.2"; Scaffold002 rebuild exon 5901773 5901844 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.2"; Scaffold002 rebuild exon 5901922 5902046 . - . gene_id "RvY_05400"; transcript_id "RvY_05400.2"; Scaffold002 rebuild transcript 5904164 5905094 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.1"; gene_name "(1)RAB7A"; annotation "(1)Ras-related protein Rab-7a(2)hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "(1)Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "(1)K07897"; similar_genes "(1)RAB7A_RAT(e-value:1.1e-92;bit-score:337.0)"; Scaffold002 rebuild exon 5904164 5904216 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.1"; Scaffold002 rebuild exon 5904354 5904480 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.1"; Scaffold002 rebuild exon 5904560 5904778 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.1"; Scaffold002 rebuild exon 5904879 5905094 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.1"; Scaffold002 rebuild transcript 5904654 5905209 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.2"; gene_name "(1)RAB7A"; annotation "(1)Ras-related protein Rab-7a(2)hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "(1)Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "(1)K07897"; similar_genes "(1)RAB7A_RAT(e-value:1.1e-92;bit-score:337.0)"; Scaffold002 rebuild exon 5904654 5904778 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.2"; Scaffold002 rebuild exon 5904879 5905209 . + . gene_id "RvY_05401"; transcript_id "RvY_05401.2"; Scaffold002 rebuild transcript 5905584 5906583 . - . gene_id "RvY_05402"; transcript_id "RvY_05402.1"; annotation "putative Mesencephalic astrocyte-derived neurotrophic factor homolog"; Pfam "[Armet] Degradation arginine-rich protein for mis-folding"; similar_genes "ARMET_DROMO(e-value:2.5e-39;bit-score:160.0)"; Scaffold002 rebuild exon 5905584 5905750 . - . gene_id "RvY_05402"; transcript_id "RvY_05402.1"; Scaffold002 rebuild exon 5905846 5905987 . - . gene_id "RvY_05402"; transcript_id "RvY_05402.1"; Scaffold002 rebuild exon 5906162 5906289 . - . gene_id "RvY_05402"; transcript_id "RvY_05402.1"; Scaffold002 rebuild exon 5906478 5906583 . - . gene_id "RvY_05402"; transcript_id "RvY_05402.1"; Scaffold002 rebuild transcript 5908057 5908648 . + . gene_id "RvY_05403"; transcript_id "RvY_05403.1"; gene_name "UBE2D_E"; annotation "Ubiquitin-conjugating enzyme E2-17 kDa"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K06689"; similar_genes "UBCD1_DROME(e-value:3.3e-54;bit-score:209.0)"; Scaffold002 rebuild exon 5908057 5908065 . + . gene_id "RvY_05403"; transcript_id "RvY_05403.1"; Scaffold002 rebuild exon 5908148 5908225 . + . gene_id "RvY_05403"; transcript_id "RvY_05403.1"; Scaffold002 rebuild exon 5908294 5908399 . + . gene_id "RvY_05403"; transcript_id "RvY_05403.1"; Scaffold002 rebuild exon 5908509 5908648 . + . gene_id "RvY_05403"; transcript_id "RvY_05403.1"; Scaffold002 rebuild transcript 5909653 5912757 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; gene_name "SLC6A6"; annotation "Sodium- and chloride-dependent GABA transporter 3"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "K05039"; similar_genes "S6A11_HUMAN(e-value:3.8e-110;bit-score:395.0)"; Scaffold002 rebuild exon 5909653 5909769 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5909872 5910051 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5910124 5910327 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5910414 5910551 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5910614 5910726 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5910789 5910953 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5911027 5911225 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5911340 5911472 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5911553 5911726 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5911806 5911950 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5912135 5912266 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild exon 5912475 5912757 . - . gene_id "RvY_05404"; transcript_id "RvY_05404.1"; Scaffold002 rebuild transcript 5915571 5916189 . - . gene_id "RvY_05405"; transcript_id "RvY_05405.1"; gene_name "UAA"; annotation "hypothetical protein."; Pfam "[TPT] Triose-phosphate Transporter family|[UAA] UAA transporter family"; CDD "UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine."; KO "K15278"; similar_genes "S35B4_PONAB(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 5915571 5916070 . - . gene_id "RvY_05405"; transcript_id "RvY_05405.1"; Scaffold002 rebuild exon 5916147 5916189 . - . gene_id "RvY_05405"; transcript_id "RvY_05405.1"; Scaffold002 rebuild transcript 5916309 5917134 . - . gene_id "RvY_05406"; transcript_id "RvY_05406.1"; gene_name "UAA"; annotation "hypothetical protein."; Pfam "[UAA] UAA transporter family"; CDD "UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine."; KO "K15278"; Scaffold002 rebuild exon 5916309 5916444 . - . gene_id "RvY_05406"; transcript_id "RvY_05406.1"; Scaffold002 rebuild exon 5916525 5916574 . - . gene_id "RvY_05406"; transcript_id "RvY_05406.1"; Scaffold002 rebuild exon 5916659 5916761 . - . gene_id "RvY_05406"; transcript_id "RvY_05406.1"; Scaffold002 rebuild exon 5916883 5916996 . - . gene_id "RvY_05406"; transcript_id "RvY_05406.1"; Scaffold002 rebuild exon 5917058 5917134 . - . gene_id "RvY_05406"; transcript_id "RvY_05406.1"; Scaffold002 rebuild transcript 5918007 5919110 . + . gene_id "RvY_05407"; transcript_id "RvY_05407.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5918007 5918306 . + . gene_id "RvY_05407"; transcript_id "RvY_05407.1"; Scaffold002 rebuild exon 5918447 5918686 . + . gene_id "RvY_05407"; transcript_id "RvY_05407.1"; Scaffold002 rebuild exon 5918754 5919110 . + . gene_id "RvY_05407"; transcript_id "RvY_05407.1"; Scaffold002 rebuild transcript 5919544 5926315 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; gene_name "STKc_PCTAIRE_like"; annotation "Cell division protein kinase 17"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events."; EC "EC2.7.11.22"; KO "K15595"; similar_genes "CDK17_HUMAN(e-value:6.8e-80;bit-score:294.0)"; Scaffold002 rebuild exon 5919544 5919590 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5919838 5919906 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5919986 5920076 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5920172 5920395 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5920680 5920700 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5920779 5920840 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5920946 5921130 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5921219 5921376 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5922243 5922398 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5922524 5922589 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5922789 5923058 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild exon 5926189 5926315 . - . gene_id "RvY_05408"; transcript_id "RvY_05408.1"; Scaffold002 rebuild transcript 5927784 5928741 . - . gene_id "RvY_05409"; transcript_id "RvY_05409.1"; gene_name "RAB43"; annotation "Ras-related protein Rab-43"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07930"; similar_genes "RAB43_HUMAN(e-value:5.6e-54;bit-score:208.0)"; Scaffold002 rebuild exon 5927784 5927927 . - . gene_id "RvY_05409"; transcript_id "RvY_05409.1"; Scaffold002 rebuild exon 5928005 5928123 . - . gene_id "RvY_05409"; transcript_id "RvY_05409.1"; Scaffold002 rebuild exon 5928190 5928373 . - . gene_id "RvY_05409"; transcript_id "RvY_05409.1"; Scaffold002 rebuild exon 5928460 5928522 . - . gene_id "RvY_05409"; transcript_id "RvY_05409.1"; Scaffold002 rebuild exon 5928619 5928741 . - . gene_id "RvY_05409"; transcript_id "RvY_05409.1"; Scaffold002 rebuild transcript 5930249 5931595 . + . gene_id "RvY_05410"; transcript_id "RvY_05410.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold002 rebuild exon 5930249 5930539 . + . gene_id "RvY_05410"; transcript_id "RvY_05410.1"; Scaffold002 rebuild exon 5930605 5930739 . + . gene_id "RvY_05410"; transcript_id "RvY_05410.1"; Scaffold002 rebuild exon 5930821 5930913 . + . gene_id "RvY_05410"; transcript_id "RvY_05410.1"; Scaffold002 rebuild exon 5931040 5931190 . + . gene_id "RvY_05410"; transcript_id "RvY_05410.1"; Scaffold002 rebuild exon 5931267 5931595 . + . gene_id "RvY_05410"; transcript_id "RvY_05410.1"; Scaffold002 rebuild transcript 5932233 5933272 . - . gene_id "RvY_05411"; transcript_id "RvY_05411.1"; gene_name "ARL8B"; annotation "ADP-ribosylation factor-like protein 8A"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[G-alpha] G-protein alpha subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved."; KO "K07956"; similar_genes "ARL8A_CHICK(e-value:1.9e-90;bit-score:330.0)"; Scaffold002 rebuild exon 5932233 5932282 . - . gene_id "RvY_05411"; transcript_id "RvY_05411.1"; Scaffold002 rebuild exon 5932342 5932412 . - . gene_id "RvY_05411"; transcript_id "RvY_05411.1"; Scaffold002 rebuild exon 5932547 5932782 . - . gene_id "RvY_05411"; transcript_id "RvY_05411.1"; Scaffold002 rebuild exon 5932888 5932968 . - . gene_id "RvY_05411"; transcript_id "RvY_05411.1"; Scaffold002 rebuild exon 5933150 5933272 . - . gene_id "RvY_05411"; transcript_id "RvY_05411.1"; Scaffold002 rebuild transcript 5933435 5933750 . - . gene_id "RvY_05412"; transcript_id "RvY_05412.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5933435 5933507 . - . gene_id "RvY_05412"; transcript_id "RvY_05412.1"; Scaffold002 rebuild exon 5933563 5933750 . - . gene_id "RvY_05412"; transcript_id "RvY_05412.1"; Scaffold002 rebuild transcript 5934335 5936548 . - . gene_id "RvY_05413"; transcript_id "RvY_05413.1"; gene_name "tatD"; annotation "TatD DNase family protein [EC:3.1.21.-]"; Pfam "[TatD_DNase] TatD related DNase"; EC "EC3.1.21.-"; KO "K03424"; Scaffold002 rebuild exon 5934335 5934517 . - . gene_id "RvY_05413"; transcript_id "RvY_05413.1"; Scaffold002 rebuild exon 5934584 5934796 . - . gene_id "RvY_05413"; transcript_id "RvY_05413.1"; Scaffold002 rebuild exon 5934904 5935060 . - . gene_id "RvY_05413"; transcript_id "RvY_05413.1"; Scaffold002 rebuild exon 5935132 5935884 . - . gene_id "RvY_05413"; transcript_id "RvY_05413.1"; Scaffold002 rebuild exon 5935980 5936548 . - . gene_id "RvY_05413"; transcript_id "RvY_05413.1"; Scaffold002 rebuild transcript 5937493 5938928 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; annotation "hypothetical protein."; Pfam "[DUF3661] Vaculolar membrane protein"; Scaffold002 rebuild exon 5937493 5937643 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild exon 5937727 5937775 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild exon 5937839 5937934 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild exon 5938055 5938176 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild exon 5938341 5938465 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild exon 5938555 5938632 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild exon 5938704 5938928 . + . gene_id "RvY_05414"; transcript_id "RvY_05414.1"; Scaffold002 rebuild transcript 5939456 5940997 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5939456 5939811 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; Scaffold002 rebuild exon 5939902 5940028 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; Scaffold002 rebuild exon 5940105 5940173 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; Scaffold002 rebuild exon 5940275 5940458 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; Scaffold002 rebuild exon 5940607 5940792 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; Scaffold002 rebuild exon 5940987 5940997 . - . gene_id "RvY_05415"; transcript_id "RvY_05415.1"; Scaffold002 rebuild transcript 5941210 5941870 . + . gene_id "RvY_05416"; transcript_id "RvY_05416.1"; gene_name "C3ORF10"; annotation "chromosome 3 open reading frame 10"; KO "K05752"; similar_genes "BRK1B_XENLA(e-value:5.5e-18;bit-score:89.0)"; Scaffold002 rebuild exon 5941210 5941290 . + . gene_id "RvY_05416"; transcript_id "RvY_05416.1"; Scaffold002 rebuild exon 5941415 5941490 . + . gene_id "RvY_05416"; transcript_id "RvY_05416.1"; Scaffold002 rebuild exon 5941658 5941740 . + . gene_id "RvY_05416"; transcript_id "RvY_05416.1"; Scaffold002 rebuild exon 5941844 5941870 . + . gene_id "RvY_05416"; transcript_id "RvY_05416.1"; Scaffold002 rebuild transcript 5942275 5943039 . - . gene_id "RvY_05417"; transcript_id "RvY_05417.1"; annotation "hypothetical protein."; Pfam "[Renin_r] Renin receptor-like protein"; Scaffold002 rebuild exon 5942275 5943039 . - . gene_id "RvY_05417"; transcript_id "RvY_05417.1"; Scaffold002 rebuild transcript 5943537 5944080 . + . gene_id "RvY_05418"; transcript_id "RvY_05418.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5943537 5943655 . + . gene_id "RvY_05418"; transcript_id "RvY_05418.1"; Scaffold002 rebuild exon 5943798 5944080 . + . gene_id "RvY_05418"; transcript_id "RvY_05418.1"; Scaffold002 rebuild transcript 5944516 5946381 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; gene_name "PSMD3"; annotation "Probable 26S proteasome non-ATPase regulatory subunit 3"; Pfam "[PCI]|[Rpn3_C] Proteasome regulatory subunit C-terminal"; KO "K03033"; similar_genes "PSMD3_ANOGA(e-value:5.7e-56;bit-score:215.0)"; Scaffold002 rebuild exon 5944516 5945021 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; Scaffold002 rebuild exon 5945078 5945192 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; Scaffold002 rebuild exon 5945279 5945710 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; Scaffold002 rebuild exon 5945777 5945929 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; Scaffold002 rebuild exon 5946020 5946207 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; Scaffold002 rebuild exon 5946270 5946381 . - . gene_id "RvY_05419"; transcript_id "RvY_05419.1"; Scaffold002 rebuild transcript 5947022 5949007 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; gene_name "OTUD5"; annotation "OTU domain-containing protein 5"; Pfam "[OTU] OTU-like cysteine protease"; EC "EC3.1.2.15"; KO "K12655"; similar_genes "OTUD5_XENTR(e-value:2.0e-77;bit-score:286.0)"; Scaffold002 rebuild exon 5947022 5947266 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5947387 5947679 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5947748 5947812 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5947887 5948043 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5948112 5948260 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5948344 5948529 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5948667 5948814 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild exon 5948898 5949007 . + . gene_id "RvY_05420"; transcript_id "RvY_05420.1"; Scaffold002 rebuild transcript 5953518 5959375 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; gene_name "PIM1"; annotation "proto-oncogene serine/threonine-protein kinase Pim-1 [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Kdo] Lipopolysaccharide kinase (Kdo/WaaP) family"; EC "EC2.7.11.1"; KO "K04702"; similar_genes "PIM1_BOVIN(e-value:3.3e-22;bit-score:103.0)"; Scaffold002 rebuild exon 5953518 5953638 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5954384 5954490 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5954584 5954631 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5957581 5957796 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5957880 5958036 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5958328 5958516 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5958671 5958910 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild exon 5959152 5959375 . + . gene_id "RvY_05421"; transcript_id "RvY_05421.1"; Scaffold002 rebuild transcript 5964014 5966789 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; annotation "hypothetical protein."; Pfam "[BicD] Microtubule-associated protein Bicaudal-D"; similar_genes "BICD1_MOUSE(e-value:1.7e-19;bit-score:94.0)"; Scaffold002 rebuild exon 5964014 5964046 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild exon 5964127 5964412 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild exon 5964485 5964863 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild exon 5965046 5965521 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild exon 5965740 5966279 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild exon 5966357 5966517 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild exon 5966589 5966789 . - . gene_id "RvY_05422"; transcript_id "RvY_05422.1"; Scaffold002 rebuild transcript 5968155 5968400 . - . gene_id "RvY_05423"; transcript_id "RvY_05423.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5968155 5968400 . - . gene_id "RvY_05423"; transcript_id "RvY_05423.1"; Scaffold002 rebuild transcript 5970906 5972487 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5970906 5971037 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.1"; Scaffold002 rebuild exon 5971613 5971898 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.1"; Scaffold002 rebuild exon 5972288 5972487 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.1"; Scaffold002 rebuild transcript 5971503 5971883 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5971503 5971558 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.2"; Scaffold002 rebuild exon 5971613 5971883 . + . gene_id "RvY_05424"; transcript_id "RvY_05424.2"; Scaffold002 rebuild transcript 5972892 5973762 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5972892 5972976 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.1"; Scaffold002 rebuild exon 5973156 5973223 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.1"; Scaffold002 rebuild exon 5973309 5973393 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.1"; Scaffold002 rebuild exon 5973477 5973567 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.1"; Scaffold002 rebuild exon 5973711 5973762 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.1"; Scaffold002 rebuild transcript 5972892 5973277 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5972892 5972976 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.2"; Scaffold002 rebuild exon 5973156 5973277 . + . gene_id "RvY_05425"; transcript_id "RvY_05425.2"; Scaffold002 rebuild transcript 5973969 5974373 . + . gene_id "RvY_05426"; transcript_id "RvY_05426.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5973969 5974373 . + . gene_id "RvY_05426"; transcript_id "RvY_05426.1"; Scaffold002 rebuild transcript 5973969 5974510 . + . gene_id "RvY_05426"; transcript_id "RvY_05426.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 5973969 5974331 . + . gene_id "RvY_05426"; transcript_id "RvY_05426.2"; Scaffold002 rebuild exon 5974493 5974510 . + . gene_id "RvY_05426"; transcript_id "RvY_05426.2"; Scaffold002 rebuild transcript 5977131 5979121 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; gene_name "SEPSECS"; annotation "O-phosphoseryl-tRNA(Sec) selenium transferase"; Pfam "[Beta_elim_lyase] Beta-eliminating lyase|[SLA_LP_auto_ag] Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)"; CDD "O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein."; EC "EC2.9.1.-|EC2.9.1.2"; KO "K03341"; similar_genes "SPCS_MOUSE(e-value:1.2e-64;bit-score:244.0)"; Scaffold002 rebuild exon 5977131 5977244 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild exon 5977385 5977971 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild exon 5978043 5978275 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild exon 5978354 5978539 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild exon 5978629 5978710 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild exon 5978788 5979034 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild exon 5979113 5979121 . + . gene_id "RvY_05427"; transcript_id "RvY_05427.1"; Scaffold002 rebuild transcript 5982633 5999376 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; gene_name "HOX"; annotation "Homeobox protein homothorax"; Pfam "[Homeobox_KN] Homeobox KN domain|[Homeobox]"; CDD "Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes"; KO "K15613"; similar_genes "HTH_DROME(e-value:5.9e-60;bit-score:228.0)"; Scaffold002 rebuild exon 5982633 5982883 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5983054 5983195 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5985574 5985624 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5987465 5987515 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5989459 5989887 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5991887 5992061 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5997307 5997449 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5998263 5998339 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5998669 5998883 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild exon 5999210 5999376 . + . gene_id "RvY_05428"; transcript_id "RvY_05428.1"; Scaffold002 rebuild transcript 5999757 6001517 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_16] Putative methyltransferase"; similar_genes "(1)CB034_XENLA(e-value:4.7e-13;bit-score:72.0)(2)CB034_XENLA(e-value:4.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 5999757 5999957 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6000038 6000176 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6000239 6000305 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6000376 6000439 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6000549 6000603 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6000755 6000815 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6000968 6001026 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6001104 6001378 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild exon 6001452 6001517 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.1"; Scaffold002 rebuild transcript 6000417 6001517 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.2"; annotation "hypothetical protein."; Pfam "[Methyltransf_16] Putative methyltransferase"; similar_genes "(1)CB034_XENLA(e-value:4.7e-13;bit-score:72.0)(2)CB034_XENLA(e-value:4.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 6000417 6000603 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.2"; Scaffold002 rebuild exon 6000755 6000815 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.2"; Scaffold002 rebuild exon 6000968 6001026 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.2"; Scaffold002 rebuild exon 6001104 6001378 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.2"; Scaffold002 rebuild exon 6001452 6001517 . - . gene_id "RvY_05429"; transcript_id "RvY_05429.2"; Scaffold002 rebuild transcript 6002269 6002691 . - . gene_id "RvY_05430"; transcript_id "RvY_05430.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6002269 6002418 . - . gene_id "RvY_05430"; transcript_id "RvY_05430.1"; Scaffold002 rebuild exon 6002554 6002691 . - . gene_id "RvY_05430"; transcript_id "RvY_05430.1"; Scaffold002 rebuild transcript 6005170 6008555 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; gene_name "PRKAR"; annotation "cAMP-dependent protein kinase regulator"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "K04739"; similar_genes "KAP2_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 6005170 6005321 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6005495 6005665 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6005897 6006074 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6006161 6006236 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6006299 6006380 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6006441 6006516 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6006597 6006760 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6007129 6007336 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6007486 6007549 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild exon 6008476 6008555 . - . gene_id "RvY_05431"; transcript_id "RvY_05431.1"; Scaffold002 rebuild transcript 6009731 6012437 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; gene_name "FOXK"; annotation "putative Forkhead box protein K1"; Pfam "[FHA]|[Fork_head] Fork head domain"; KO "K09404"; similar_genes "FOXK1_HUMAN(e-value:2.0e-41;bit-score:167.0)"; Scaffold002 rebuild exon 6009731 6009864 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild exon 6009952 6010263 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild exon 6010650 6010847 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild exon 6011114 6011327 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild exon 6011516 6011585 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild exon 6011726 6011840 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild exon 6011906 6012437 . + . gene_id "RvY_05432"; transcript_id "RvY_05432.1"; Scaffold002 rebuild transcript 6013640 6017494 . + . gene_id "RvY_05433"; transcript_id "RvY_05433.1"; gene_name "RUNX2"; annotation "putative Runt-related transcription factor 1"; Pfam "[Runt]"; CDD "Runt domain."; KO "K09278"; similar_genes "RUNX1_HUMAN(e-value:7.6e-41;bit-score:165.0)"; Scaffold002 rebuild exon 6013640 6014033 . + . gene_id "RvY_05433"; transcript_id "RvY_05433.1"; Scaffold002 rebuild exon 6014173 6014286 . + . gene_id "RvY_05433"; transcript_id "RvY_05433.1"; Scaffold002 rebuild exon 6015368 6015586 . + . gene_id "RvY_05433"; transcript_id "RvY_05433.1"; Scaffold002 rebuild exon 6016690 6016797 . + . gene_id "RvY_05433"; transcript_id "RvY_05433.1"; Scaffold002 rebuild exon 6016896 6017494 . + . gene_id "RvY_05433"; transcript_id "RvY_05433.1"; Scaffold002 rebuild transcript 6018381 6019918 . - . gene_id "RvY_05434"; transcript_id "RvY_05434.1"; gene_name "UBE2Q"; annotation "putative Ubiquitin-conjugating enzyme E2 Q1"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the Scaffold002 rebuild exon 6018381 6018610 . - . gene_id "RvY_05434"; transcript_id "RvY_05434.1"; Scaffold002 rebuild exon 6018840 6018915 . - . gene_id "RvY_05434"; transcript_id "RvY_05434.1"; Scaffold002 rebuild exon 6018998 6019326 . - . gene_id "RvY_05434"; transcript_id "RvY_05434.1"; Scaffold002 rebuild exon 6019405 6019918 . - . gene_id "RvY_05434"; transcript_id "RvY_05434.1"; Scaffold002 rebuild transcript 6022177 6023109 . + . gene_id "RvY_05435"; transcript_id "RvY_05435.1"; gene_name "NDUFB10"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 10 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUFB10] NADH-ubiquinone oxidoreductase subunit 10"; CDD "NADH-ubiquinone oxidoreductase subunit 10. NDUFB10 is a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus."; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03966"; Scaffold002 rebuild exon 6022177 6022526 . + . gene_id "RvY_05435"; transcript_id "RvY_05435.1"; Scaffold002 rebuild exon 6022593 6023109 . + . gene_id "RvY_05435"; transcript_id "RvY_05435.1"; Scaffold002 rebuild transcript 6023674 6025464 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6023674 6023757 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6023833 6023963 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6024040 6024113 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6024204 6024281 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6024547 6024617 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6024687 6024910 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6024996 6025083 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild exon 6025192 6025464 . + . gene_id "RvY_05436"; transcript_id "RvY_05436.1"; Scaffold002 rebuild transcript 6025864 6034087 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; annotation "hypothetical protein."; Pfam "[DUF1981]"; Scaffold002 rebuild exon 6025864 6025996 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6026073 6026209 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6026280 6026417 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6026518 6026580 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6026651 6026759 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6026842 6026923 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6026989 6027108 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6027170 6027313 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6027393 6027525 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6027595 6027677 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6027757 6028322 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6028552 6028959 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6029045 6029239 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6029351 6029483 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6029551 6029712 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6029856 6030128 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6030207 6030261 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6030323 6030549 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6030631 6030724 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6030820 6030907 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6030989 6031118 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6031206 6031558 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6031627 6031782 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6031854 6031968 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6032194 6032422 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6032503 6032645 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6032720 6032811 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6033039 6033796 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild exon 6033875 6034087 . + . gene_id "RvY_05437"; transcript_id "RvY_05437.1"; Scaffold002 rebuild transcript 6034841 6037261 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6034841 6035203 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; Scaffold002 rebuild exon 6035327 6035729 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; Scaffold002 rebuild exon 6035795 6036105 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; Scaffold002 rebuild exon 6036364 6036843 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; Scaffold002 rebuild exon 6036933 6037075 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; Scaffold002 rebuild exon 6037156 6037261 . + . gene_id "RvY_05438"; transcript_id "RvY_05438.1"; Scaffold002 rebuild transcript 6037485 6038609 . - . gene_id "RvY_05439"; transcript_id "RvY_05439.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6037485 6037743 . - . gene_id "RvY_05439"; transcript_id "RvY_05439.1"; Scaffold002 rebuild exon 6037822 6037906 . - . gene_id "RvY_05439"; transcript_id "RvY_05439.1"; Scaffold002 rebuild exon 6037985 6038128 . - . gene_id "RvY_05439"; transcript_id "RvY_05439.1"; Scaffold002 rebuild exon 6038201 6038274 . - . gene_id "RvY_05439"; transcript_id "RvY_05439.1"; Scaffold002 rebuild exon 6038359 6038609 . - . gene_id "RvY_05439"; transcript_id "RvY_05439.1"; Scaffold002 rebuild transcript 6038892 6041577 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; gene_name "MSH2"; annotation "DNA mismatch repair protein Msh2"; Pfam "[MutS_III] MutS domain III|[MutS_V] MutS domain V|[MutS_IV] MutS family domain IV"; CDD "Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]"; KO "K08735"; similar_genes "MSH2_MOUSE(e-value:3.1e-65;bit-score:246.0)"; Scaffold002 rebuild exon 6038892 6038938 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6039011 6039086 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6039152 6039374 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6039449 6039708 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6039804 6039964 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6040067 6040192 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6040273 6040456 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6040531 6040673 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6040743 6041129 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6041228 6041332 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild exon 6041418 6041577 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.1"; Scaffold002 rebuild transcript 6039003 6041577 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; gene_name "MSH2"; annotation "DNA mismatch repair protein Msh2"; Pfam "[MutS_III] MutS domain III|[MutS_V] MutS domain V|[MutS_IV] MutS family domain IV"; CDD "Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]"; KO "K08735"; similar_genes "MSH2_MOUSE(e-value:3.1e-65;bit-score:246.0)"; Scaffold002 rebuild exon 6039003 6039086 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6039152 6039374 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6039449 6039708 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6039804 6039964 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6040067 6040192 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6040273 6040456 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6040531 6040673 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6040743 6041129 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6041228 6041332 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild exon 6041418 6041577 . - . gene_id "RvY_05440"; transcript_id "RvY_05440.2"; Scaffold002 rebuild transcript 6041970 6042575 . + . gene_id "RvY_05441"; transcript_id "RvY_05441.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6041970 6042575 . + . gene_id "RvY_05441"; transcript_id "RvY_05441.1"; Scaffold002 rebuild transcript 6042731 6043183 . + . gene_id "RvY_05442"; transcript_id "RvY_05442.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6042731 6043183 . + . gene_id "RvY_05442"; transcript_id "RvY_05442.1"; Scaffold002 rebuild transcript 6043426 6044082 . + . gene_id "RvY_05443"; transcript_id "RvY_05443.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold002 rebuild exon 6043426 6044082 . + . gene_id "RvY_05443"; transcript_id "RvY_05443.1"; Scaffold002 rebuild transcript 6044308 6045036 . + . gene_id "RvY_05444"; transcript_id "RvY_05444.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6044308 6045036 . + . gene_id "RvY_05444"; transcript_id "RvY_05444.1"; Scaffold002 rebuild transcript 6047338 6047842 . + . gene_id "RvY_05445"; transcript_id "RvY_05445.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6047338 6047416 . + . gene_id "RvY_05445"; transcript_id "RvY_05445.1"; Scaffold002 rebuild exon 6047553 6047842 . + . gene_id "RvY_05445"; transcript_id "RvY_05445.1"; Scaffold002 rebuild transcript 6049435 6049785 . - . gene_id "RvY_05446"; transcript_id "RvY_05446.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6049435 6049785 . - . gene_id "RvY_05446"; transcript_id "RvY_05446.1"; Scaffold002 rebuild transcript 6049909 6051149 . - . gene_id "RvY_05447"; transcript_id "RvY_05447.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6049909 6049991 . - . gene_id "RvY_05447"; transcript_id "RvY_05447.1"; Scaffold002 rebuild exon 6050362 6050672 . - . gene_id "RvY_05447"; transcript_id "RvY_05447.1"; Scaffold002 rebuild exon 6050776 6051149 . - . gene_id "RvY_05447"; transcript_id "RvY_05447.1"; Scaffold002 rebuild transcript 6051186 6051617 . - . gene_id "RvY_05448"; transcript_id "RvY_05448.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6051186 6051617 . - . gene_id "RvY_05448"; transcript_id "RvY_05448.1"; Scaffold002 rebuild transcript 6053953 6054946 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6053953 6054010 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.1"; Scaffold002 rebuild exon 6054269 6054335 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.1"; Scaffold002 rebuild exon 6054405 6054543 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.1"; Scaffold002 rebuild exon 6054611 6054946 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.1"; Scaffold002 rebuild transcript 6053508 6054946 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6053508 6053514 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.2"; Scaffold002 rebuild exon 6054269 6054335 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.2"; Scaffold002 rebuild exon 6054405 6054543 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.2"; Scaffold002 rebuild exon 6054611 6054946 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.2"; Scaffold002 rebuild transcript 6054121 6054786 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6054121 6054335 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.3"; Scaffold002 rebuild exon 6054405 6054543 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.3"; Scaffold002 rebuild exon 6054610 6054786 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.3"; Scaffold002 rebuild transcript 6054121 6054588 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6054121 6054335 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.4"; Scaffold002 rebuild exon 6054405 6054588 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.4"; Scaffold002 rebuild transcript 6053329 6053640 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.5"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6053329 6053640 . + . gene_id "RvY_05449"; transcript_id "RvY_05449.5"; Scaffold002 rebuild transcript 6057178 6058196 . - . gene_id "RvY_05450"; transcript_id "RvY_05450.1"; gene_name "TFIIB"; annotation "transcription initiation factor TFIIB"; Pfam "[TFIIB] Transcription factor TFIIB repeat|[TF_Zn_Ribbon] TFIIB zinc-binding"; CDD "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]"; KO "K03124"; similar_genes "TF2B_DROME(e-value:1.2e-11;bit-score:68.0)"; Scaffold002 rebuild exon 6057178 6057707 . - . gene_id "RvY_05450"; transcript_id "RvY_05450.1"; Scaffold002 rebuild exon 6057776 6058196 . - . gene_id "RvY_05450"; transcript_id "RvY_05450.1"; Scaffold002 rebuild transcript 6059699 6060633 . + . gene_id "RvY_05451"; transcript_id "RvY_05451.1"; gene_name "ATPeF0S"; annotation "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s"; KO "K07554"; Scaffold002 rebuild exon 6059699 6059826 . + . gene_id "RvY_05451"; transcript_id "RvY_05451.1"; Scaffold002 rebuild exon 6059951 6060108 . + . gene_id "RvY_05451"; transcript_id "RvY_05451.1"; Scaffold002 rebuild exon 6060206 6060256 . + . gene_id "RvY_05451"; transcript_id "RvY_05451.1"; Scaffold002 rebuild exon 6060353 6060633 . + . gene_id "RvY_05451"; transcript_id "RvY_05451.1"; Scaffold002 rebuild transcript 6061701 6063480 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; gene_name "ndh"; annotation "NADH dehydrogenase [EC:1.6.99.3]"; Pfam "[Pyr_redox] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase"; CDD "NADH dehydrogenase; Provisional"; EC "EC1.6.-.-|EC1.6.99.3"; KO "K03885"; similar_genes "NDH_DICDI(e-value:3.2e-18;bit-score:90.0)"; Scaffold002 rebuild exon 6061701 6061992 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; Scaffold002 rebuild exon 6062077 6062112 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; Scaffold002 rebuild exon 6062193 6062389 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; Scaffold002 rebuild exon 6062453 6062909 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; Scaffold002 rebuild exon 6063017 6063223 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; Scaffold002 rebuild exon 6063290 6063480 . + . gene_id "RvY_05452"; transcript_id "RvY_05452.1"; Scaffold002 rebuild transcript 6063838 6065629 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; gene_name "DCLRE1C"; annotation "DNA cross-link repair 1C protein [EC:3.1.-.-]"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[DRMBL] DNA repair metallo-beta-lactamase|[Lactamase_B_2] Beta-lactamase superfamily domain"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; EC "EC3.1.-.-"; KO "K10887"; similar_genes "DCR1C_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 6063838 6063949 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6064041 6064092 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6064176 6064272 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6064389 6064445 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6064506 6064865 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6064931 6065035 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6065110 6065343 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild exon 6065420 6065629 . + . gene_id "RvY_05453"; transcript_id "RvY_05453.1"; Scaffold002 rebuild transcript 6065999 6069058 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; annotation "hypothetical protein."; Pfam "[LEM]|[MSC] Man1-Src1p-C-terminal domain"; Scaffold002 rebuild exon 6065999 6066184 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6066268 6066461 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6066543 6066875 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6066984 6067085 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6067147 6067289 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6067380 6067527 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6067613 6067738 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6067800 6068117 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6068187 6068495 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild exon 6068584 6069058 . - . gene_id "RvY_05454"; transcript_id "RvY_05454.1"; Scaffold002 rebuild transcript 6069797 6070474 . + . gene_id "RvY_05455"; transcript_id "RvY_05455.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6069797 6070474 . + . gene_id "RvY_05455"; transcript_id "RvY_05455.1"; Scaffold002 rebuild transcript 6070484 6071070 . + . gene_id "RvY_05456"; transcript_id "RvY_05456.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6070484 6070760 . + . gene_id "RvY_05456"; transcript_id "RvY_05456.1"; Scaffold002 rebuild exon 6070949 6071070 . + . gene_id "RvY_05456"; transcript_id "RvY_05456.1"; Scaffold002 rebuild transcript 6071275 6071577 . + . gene_id "RvY_05457"; transcript_id "RvY_05457.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6071275 6071577 . + . gene_id "RvY_05457"; transcript_id "RvY_05457.1"; Scaffold002 rebuild transcript 6073200 6073364 . - . gene_id "RvY_05458"; transcript_id "RvY_05458.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6073200 6073364 . - . gene_id "RvY_05458"; transcript_id "RvY_05458.1"; Scaffold002 rebuild transcript 6073296 6073709 . + . gene_id "RvY_05459"; transcript_id "RvY_05459.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6073296 6073709 . + . gene_id "RvY_05459"; transcript_id "RvY_05459.1"; Scaffold002 rebuild transcript 6073822 6074083 . - . gene_id "RvY_05460"; transcript_id "RvY_05460.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6073822 6073910 . - . gene_id "RvY_05460"; transcript_id "RvY_05460.1"; Scaffold002 rebuild exon 6073978 6074083 . - . gene_id "RvY_05460"; transcript_id "RvY_05460.1"; Scaffold002 rebuild transcript 6076095 6076292 . - . gene_id "RvY_05461"; transcript_id "RvY_05461.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6076095 6076292 . - . gene_id "RvY_05461"; transcript_id "RvY_05461.1"; Scaffold002 rebuild transcript 6077512 6080075 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; gene_name "FGD5_6"; annotation "FYVE, RhoGEF and PH domain containing 5/6"; Pfam "[PH]|[FYVE] FYVE zinc finger|[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; KO "K05724"; Scaffold002 rebuild exon 6077512 6078046 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild exon 6078222 6078718 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild exon 6078782 6078920 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild exon 6079006 6079202 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild exon 6079409 6079495 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild exon 6079598 6079795 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild exon 6079863 6080075 . + . gene_id "RvY_05462"; transcript_id "RvY_05462.1"; Scaffold002 rebuild transcript 6081714 6091444 . - . gene_id "RvY_05463"; transcript_id "RvY_05463.1"; annotation "hypothetical protein."; Pfam "[ELL] RNA polymerase II elongation factor ELL|[Occludin_ELL] Occludin homology domain"; KO "K15183"; Scaffold002 rebuild exon 6081714 6082038 . - . gene_id "RvY_05463"; transcript_id "RvY_05463.1"; Scaffold002 rebuild exon 6082279 6083232 . - . gene_id "RvY_05463"; transcript_id "RvY_05463.1"; Scaffold002 rebuild exon 6083310 6083530 . - . gene_id "RvY_05463"; transcript_id "RvY_05463.1"; Scaffold002 rebuild exon 6084856 6084897 . - . gene_id "RvY_05463"; transcript_id "RvY_05463.1"; Scaffold002 rebuild exon 6091307 6091444 . - . gene_id "RvY_05463"; transcript_id "RvY_05463.1"; Scaffold002 rebuild transcript 6092975 6095743 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; gene_name "APBB2"; annotation "amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like)"; Pfam "[PID] Phosphotyrosine interaction domain (PTB/PID)"; CDD "Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; KO "K04530"; similar_genes "APBB2_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold002 rebuild exon 6092975 6093037 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6093098 6093287 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6093358 6093431 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6093522 6093677 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6093743 6094016 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6094329 6094471 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6094546 6094698 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6094791 6094874 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6094941 6095023 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6095111 6095524 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild exon 6095680 6095743 . - . gene_id "RvY_05464"; transcript_id "RvY_05464.1"; Scaffold002 rebuild transcript 6096926 6099740 . + . gene_id "RvY_05465"; transcript_id "RvY_05465.1"; annotation "hypothetical protein."; Pfam "[ADK] Adenylate kinase|[AAA_17] AAA domain"; EC "EC2.7.4.3"; similar_genes "KAD7_HUMAN(e-value:4.5e-09;bit-score:59.0)"; Scaffold002 rebuild exon 6096926 6098663 . + . gene_id "RvY_05465"; transcript_id "RvY_05465.1"; Scaffold002 rebuild exon 6098720 6098763 . + . gene_id "RvY_05465"; transcript_id "RvY_05465.1"; Scaffold002 rebuild exon 6098862 6099740 . + . gene_id "RvY_05465"; transcript_id "RvY_05465.1"; Scaffold002 rebuild transcript 6099860 6103154 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; gene_name "RHOT1"; annotation "Ras homolog gene family, member T1"; Pfam "[EF_assoc_1] EF hand associated|[Ras] Ras family|[Miro] Miro-like protein|[EF_assoc_2] EF hand associated|[EF_hand_4] EF-hand domain"; CDD "Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature."; EC "EC3.6.5.-"; KO "K07870"; similar_genes "MIRO_DROPS(e-value:6.5e-21;bit-score:99.0)"; Scaffold002 rebuild exon 6099860 6100031 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6100093 6100161 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6100298 6100506 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6100585 6100701 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6100762 6100854 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6100937 6101174 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6101242 6101469 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6101579 6101699 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6101764 6101872 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6101942 6101998 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6102089 6102130 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6102191 6102292 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6102361 6102411 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6102513 6102638 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6102711 6102764 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6102828 6103012 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild exon 6103091 6103154 . - . gene_id "RvY_05466"; transcript_id "RvY_05466.1"; Scaffold002 rebuild transcript 6104140 6108252 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; gene_name "CLCN7"; annotation "chloride channel 7"; Pfam "[CBS]|[Voltage_CLC] Voltage gated chloride channel"; CDD "ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals."; KO "K05016"; similar_genes "CLCN7_BOVIN(e-value:1.7e-25;bit-score:114.0)"; Scaffold002 rebuild exon 6104140 6104235 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6104295 6104564 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6104632 6104853 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6104931 6105104 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6105205 6105365 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6105486 6105550 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6105766 6105839 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6105935 6106161 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6106225 6106363 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6106609 6106702 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6106781 6107128 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6107202 6107413 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6107522 6107695 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6107773 6107856 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6107957 6108037 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild exon 6108121 6108252 . + . gene_id "RvY_05467"; transcript_id "RvY_05467.1"; Scaffold002 rebuild transcript 6111367 6113657 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; gene_name "ODC1"; annotation "putative Ornithine decarboxylase"; Pfam "[Orn_DAP_Arg_deC] Pyridoxal-dependent decarboxylase, C-terminal sheet domain|[Orn_Arg_deC_N] Pyridoxal-dependent decarboxylase, pyridoxal binding domain"; CDD "Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with Scaffold002 rebuild exon 6111367 6111601 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; Scaffold002 rebuild exon 6111664 6111963 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; Scaffold002 rebuild exon 6112183 6112433 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; Scaffold002 rebuild exon 6112522 6112671 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; Scaffold002 rebuild exon 6112952 6113387 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; Scaffold002 rebuild exon 6113566 6113657 . + . gene_id "RvY_05468"; transcript_id "RvY_05468.1"; Scaffold002 rebuild transcript 6114983 6117004 . + . gene_id "RvY_05469"; transcript_id "RvY_05469.1"; gene_name "KLF10_11"; annotation "putative Krueppel-like factor 10"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09209"; similar_genes "KLF10_RAT(e-value:4.6e-30;bit-score:129.0)"; Scaffold002 rebuild exon 6114983 6115225 . + . gene_id "RvY_05469"; transcript_id "RvY_05469.1"; Scaffold002 rebuild exon 6116141 6117004 . + . gene_id "RvY_05469"; transcript_id "RvY_05469.1"; Scaffold002 rebuild transcript 6117559 6117987 . + . gene_id "RvY_05470"; transcript_id "RvY_05470.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6117559 6117987 . + . gene_id "RvY_05470"; transcript_id "RvY_05470.1"; Scaffold002 rebuild transcript 6118708 6122771 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; gene_name "HYOU1"; annotation "Hypoxia up-regulated protein 1"; Pfam "[HSP70] Hsp70 protein"; KO "K09486"; similar_genes "HYOU1_HUMAN(e-value:3.4e-58;bit-score:222.0)"; Scaffold002 rebuild exon 6118708 6118745 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6118821 6118874 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6118931 6119288 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6119359 6119571 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6119639 6119849 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6119904 6120183 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6120260 6120613 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6120684 6120859 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6120942 6121159 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6121228 6121589 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6121657 6121785 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6121848 6121924 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6122023 6122177 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6122266 6122344 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6122411 6122442 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6122571 6122632 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild exon 6122711 6122771 . - . gene_id "RvY_05471"; transcript_id "RvY_05471.1"; Scaffold002 rebuild transcript 6125665 6125880 . + . gene_id "RvY_05472"; transcript_id "RvY_05472.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6125665 6125880 . + . gene_id "RvY_05472"; transcript_id "RvY_05472.1"; Scaffold002 rebuild transcript 6126388 6133595 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; gene_name "PDZ"; annotation "hypothetical protein."; Pfam "[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; similar_genes "GRIP2_HUMAN(e-value:3.8e-21;bit-score:99.0)"; Scaffold002 rebuild exon 6126388 6126436 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6129474 6129524 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6129598 6129681 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6130372 6130435 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6130509 6130651 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6130726 6130900 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6131012 6131157 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6131275 6131440 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6131638 6132339 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6132423 6132652 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6132712 6133346 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild exon 6133407 6133595 . + . gene_id "RvY_05473"; transcript_id "RvY_05473.1"; Scaffold002 rebuild transcript 6133841 6137383 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; gene_name "KCND3"; annotation "Potassium voltage-gated channel protein Shal"; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[DUF3399]|[Shal-type] Shal-type voltage-gated potassium channels|[Ion_trans] Ion transport protein"; KO "K04893"; similar_genes "KCNAL_DROME(e-value:9.7e-73;bit-score:271.0)"; Scaffold002 rebuild exon 6133841 6134095 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6134170 6134436 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6134501 6134716 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6134791 6134953 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6135158 6135465 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6135532 6135749 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6136387 6136441 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6136529 6136671 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6136745 6136781 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6136854 6136900 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6136995 6137037 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild exon 6137120 6137383 . - . gene_id "RvY_05474"; transcript_id "RvY_05474.1"; Scaffold002 rebuild transcript 6139396 6140847 . - . gene_id "RvY_05475"; transcript_id "RvY_05475.1"; annotation "hypothetical protein."; similar_genes "CCD51_BOVIN(e-value:1.2e-09;bit-score:61.0)"; Scaffold002 rebuild exon 6139396 6140077 . - . gene_id "RvY_05475"; transcript_id "RvY_05475.1"; Scaffold002 rebuild exon 6140169 6140344 . - . gene_id "RvY_05475"; transcript_id "RvY_05475.1"; Scaffold002 rebuild exon 6140572 6140847 . - . gene_id "RvY_05475"; transcript_id "RvY_05475.1"; Scaffold002 rebuild transcript 6142468 6146496 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; gene_name "USP4_11_15"; annotation "ubiquitin carboxyl-terminal hydrolase 4/11/15 [EC:3.1.2.15]"; Pfam "[DUSP]|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11835"; similar_genes "UBP15_MOUSE(e-value:4.2e-18;bit-score:89.0)"; Scaffold002 rebuild exon 6142468 6142572 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6142639 6142834 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6142913 6143178 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6143239 6143578 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6143734 6143862 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6143939 6144102 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6144165 6144251 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6144315 6144539 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6144751 6144906 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6144967 6145434 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6145509 6145660 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6145746 6145836 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6145896 6146056 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6146149 6146261 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild exon 6146330 6146496 . - . gene_id "RvY_05476"; transcript_id "RvY_05476.1"; Scaffold002 rebuild transcript 6147188 6149572 . + . gene_id "RvY_05477"; transcript_id "RvY_05477.1"; gene_name "ATPeVA"; annotation "V-type proton ATPase catalytic subunit A"; Pfam "[ATP-synt_ab_C] ATP synthase alpha/beta chain, C terminal domain|[ATP-synt_ab_N] ATP synthase alpha/beta family, beta-barrel domain|[ATP-synt_ab] ATP synthase alpha/beta family, nucleotide-binding domain"; CDD "V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase."; EC "EC3.6.3.14"; KO "K02145"; similar_genes "VATA_BOVIN(e-value:2.6e-304;bit-score:1040.0)"; Scaffold002 rebuild exon 6147188 6147931 . + . gene_id "RvY_05477"; transcript_id "RvY_05477.1"; Scaffold002 rebuild exon 6147995 6148454 . + . gene_id "RvY_05477"; transcript_id "RvY_05477.1"; Scaffold002 rebuild exon 6148756 6149132 . + . gene_id "RvY_05477"; transcript_id "RvY_05477.1"; Scaffold002 rebuild exon 6149282 6149572 . + . gene_id "RvY_05477"; transcript_id "RvY_05477.1"; Scaffold002 rebuild transcript 6150406 6153191 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; gene_name "MGAT4"; annotation "alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.145]"; Pfam "[Glyco_transf_54] N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region"; EC "EC2.4.1.145"; KO "K00738"; similar_genes "MGT4A_CHICK(e-value:5.6e-20;bit-score:95.0)"; Scaffold002 rebuild exon 6150406 6150420 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6150487 6150758 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6150985 6151138 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6151229 6151467 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6151559 6151667 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6151796 6151871 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6152140 6152437 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6152603 6152881 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild exon 6153071 6153191 . - . gene_id "RvY_05478"; transcript_id "RvY_05478.1"; Scaffold002 rebuild transcript 6154083 6154846 . + . gene_id "RvY_05479"; transcript_id "RvY_05479.1"; gene_name "NDUFS8"; annotation "Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial"; Pfam "[Fer4_18] 4Fe-4S dicluster domain|[Fer4_9] 4Fe-4S dicluster domain|[Fer4_17] 4Fe-4S dicluster domain|[Fer4_8] 4Fe-4S dicluster domain|[Fer4_2] 4Fe-4S binding domain|[Fer4_16] 4Fe-4S double cluster binding domain|[Fer4_6] 4Fe-4S binding domain|[Fer4] 4Fe-4S binding domain|[Fer4_10] 4Fe-4S dicluster domain|[Fer4_4] 4Fe-4S binding domain|[Fer4_7] 4Fe-4S dicluster domain"; CDD "NADH dehydrogenase subunit I; Provisional"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03941"; similar_genes "NDUS8_CAEEL(e-value:2.9e-74;bit-score:276.0)"; Scaffold002 rebuild exon 6154083 6154472 . + . gene_id "RvY_05479"; transcript_id "RvY_05479.1"; Scaffold002 rebuild exon 6154586 6154846 . + . gene_id "RvY_05479"; transcript_id "RvY_05479.1"; Scaffold002 rebuild transcript 6156863 6159413 . + . gene_id "RvY_05480"; transcript_id "RvY_05480.1"; gene_name "DM"; annotation "putative Doublesex- and mab-3-related transcription factor A2"; Pfam "[DM] DM DNA binding domain|[DMA] DMRTA motif"; CDD "Doublesex DNA-binding motif."; similar_genes "DMTA2_TAKRU(e-value:4.2e-35;bit-score:146.0)"; Scaffold002 rebuild exon 6156863 6157111 . + . gene_id "RvY_05480"; transcript_id "RvY_05480.1"; Scaffold002 rebuild exon 6157195 6157435 . + . gene_id "RvY_05480"; transcript_id "RvY_05480.1"; Scaffold002 rebuild exon 6158388 6158633 . + . gene_id "RvY_05480"; transcript_id "RvY_05480.1"; Scaffold002 rebuild exon 6158923 6159413 . + . gene_id "RvY_05480"; transcript_id "RvY_05480.1"; Scaffold002 rebuild transcript 6161400 6162161 . - . gene_id "RvY_05481"; transcript_id "RvY_05481.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6161400 6161962 . - . gene_id "RvY_05481"; transcript_id "RvY_05481.1"; Scaffold002 rebuild exon 6162023 6162161 . - . gene_id "RvY_05481"; transcript_id "RvY_05481.1"; Scaffold002 rebuild transcript 6163265 6167270 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6163265 6163919 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild exon 6164004 6164890 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild exon 6165086 6166075 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild exon 6166144 6166410 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild exon 6166477 6166538 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild exon 6166963 6167089 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild exon 6167175 6167270 . - . gene_id "RvY_05482"; transcript_id "RvY_05482.1"; Scaffold002 rebuild transcript 6167461 6167802 . - . gene_id "RvY_05483"; transcript_id "RvY_05483.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6167461 6167655 . - . gene_id "RvY_05483"; transcript_id "RvY_05483.1"; Scaffold002 rebuild exon 6167737 6167802 . - . gene_id "RvY_05483"; transcript_id "RvY_05483.1"; Scaffold002 rebuild transcript 6168833 6169690 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.1"; gene_name "(1)SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "(1)SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; similar_genes "(1)CRVP_OPHHA(e-value:8.0e-13;bit-score:72.0)"; Scaffold002 rebuild exon 6168833 6168935 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.1"; Scaffold002 rebuild exon 6169012 6169160 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.1"; Scaffold002 rebuild exon 6169223 6169308 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.1"; Scaffold002 rebuild exon 6169400 6169488 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.1"; Scaffold002 rebuild exon 6169557 6169690 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.1"; Scaffold002 rebuild transcript 6169252 6169760 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.2"; gene_name "(1)SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "(1)SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; similar_genes "(1)CRVP_OPHHA(e-value:8.0e-13;bit-score:72.0)"; Scaffold002 rebuild exon 6169252 6169488 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.2"; Scaffold002 rebuild exon 6169557 6169760 . + . gene_id "RvY_05484"; transcript_id "RvY_05484.2"; Scaffold002 rebuild transcript 6170746 6171685 . - . gene_id "RvY_05485"; transcript_id "RvY_05485.1"; annotation "hypothetical protein."; Pfam "[SOCS_box] SOCS box|[SPRY]"; Scaffold002 rebuild exon 6170746 6171223 . - . gene_id "RvY_05485"; transcript_id "RvY_05485.1"; Scaffold002 rebuild exon 6171356 6171603 . - . gene_id "RvY_05485"; transcript_id "RvY_05485.1"; Scaffold002 rebuild exon 6171668 6171685 . - . gene_id "RvY_05485"; transcript_id "RvY_05485.1"; Scaffold002 rebuild transcript 6172524 6180808 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; gene_name "SRGAP"; annotation "putative SLIT-ROBO Rho GTPase-activating protein 1"; Pfam "[RhoGAP]|[FCH] Fes/CIP4, and EFC/F-BAR homology domain|[SH3_1] SH3 domain"; CDD "RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold002 rebuild exon 6172524 6172760 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6172829 6173297 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6173357 6173782 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6173875 6174064 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6174146 6174450 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6174525 6174630 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6174726 6174860 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6174916 6175054 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6175119 6175349 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6175413 6175631 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6175706 6175807 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6175890 6176111 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6176203 6176266 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6176351 6176415 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6176500 6176721 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6176799 6177089 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6177158 6177216 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild exon 6180754 6180808 . - . gene_id "RvY_05486"; transcript_id "RvY_05486.1"; Scaffold002 rebuild transcript 6181809 6182063 . + . gene_id "RvY_05487"; transcript_id "RvY_05487.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6181809 6182063 . + . gene_id "RvY_05487"; transcript_id "RvY_05487.1"; Scaffold002 rebuild transcript 6182571 6183245 . - . gene_id "RvY_05488"; transcript_id "RvY_05488.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6182571 6182871 . - . gene_id "RvY_05488"; transcript_id "RvY_05488.1"; Scaffold002 rebuild exon 6183160 6183245 . - . gene_id "RvY_05488"; transcript_id "RvY_05488.1"; Scaffold002 rebuild transcript 6184705 6192499 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; gene_name "HepA"; annotation "hypothetical protein."; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "ARIP4_XENTR(e-value:2.5e-18;bit-score:90.0)"; Scaffold002 rebuild exon 6184705 6185130 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6185194 6185658 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6185933 6186418 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6186482 6186591 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6186678 6186745 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6186812 6187006 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6187099 6187260 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6187325 6187371 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6187588 6187997 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6188060 6188107 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6188176 6188265 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6188348 6188519 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6188578 6188724 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6188824 6189054 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6189167 6189220 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6189279 6189347 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6189411 6190180 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6190300 6190335 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6190412 6190529 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6190591 6190641 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6190729 6190830 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6190946 6191019 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6191085 6191906 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild exon 6191983 6192499 . - . gene_id "RvY_05489"; transcript_id "RvY_05489.1"; Scaffold002 rebuild transcript 6194083 6198277 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; gene_name "B41"; annotation "hypothetical protein."; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[FERM_C] FERM C-terminal PH-like domain|[DUF3338]"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "FRM4A_MOUSE(e-value:5.0e-21;bit-score:99.0)"; Scaffold002 rebuild exon 6194083 6194148 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6194277 6194371 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6194449 6194550 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6194643 6194807 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6194895 6194978 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6195056 6195121 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6195193 6195337 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6195409 6195485 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6195655 6195759 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6195964 6196096 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6196289 6196448 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6196533 6196690 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6196767 6197042 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild exon 6197108 6198277 . + . gene_id "RvY_05490"; transcript_id "RvY_05490.1"; Scaffold002 rebuild transcript 6198508 6199433 . - . gene_id "RvY_05491"; transcript_id "RvY_05491.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6198508 6198680 . - . gene_id "RvY_05491"; transcript_id "RvY_05491.1"; Scaffold002 rebuild exon 6198749 6198919 . - . gene_id "RvY_05491"; transcript_id "RvY_05491.1"; Scaffold002 rebuild exon 6198994 6199278 . - . gene_id "RvY_05491"; transcript_id "RvY_05491.1"; Scaffold002 rebuild exon 6199367 6199433 . - . gene_id "RvY_05491"; transcript_id "RvY_05491.1"; Scaffold002 rebuild transcript 6199546 6200879 . - . gene_id "RvY_05492"; transcript_id "RvY_05492.1"; gene_name "PTZ00268"; annotation "hypothetical protein."; Pfam "[PI-PLC-X] Phosphatidylinositol-specific phospholipase C, X domain"; CDD "glycosylphosphatidylinositol-specific phospholipase C; Provisional"; Scaffold002 rebuild exon 6199546 6200275 . - . gene_id "RvY_05492"; transcript_id "RvY_05492.1"; Scaffold002 rebuild exon 6200377 6200529 . - . gene_id "RvY_05492"; transcript_id "RvY_05492.1"; Scaffold002 rebuild exon 6200604 6200727 . - . gene_id "RvY_05492"; transcript_id "RvY_05492.1"; Scaffold002 rebuild exon 6200810 6200879 . - . gene_id "RvY_05492"; transcript_id "RvY_05492.1"; Scaffold002 rebuild transcript 6202975 6207150 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; gene_name "XPC"; annotation "xeroderma pigmentosum group C-complementing protein"; Pfam "[BHD_2] Rad4 beta-hairpin domain 2|[BHD_1] Rad4 beta-hairpin domain 1|[BHD_3] Rad4 beta-hairpin domain 3|[Rad4] Rad4 transglutaminase-like domain"; CDD "DNA repair protein rad4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10838"; similar_genes "XPC_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 6202975 6204630 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; Scaffold002 rebuild exon 6204688 6204732 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; Scaffold002 rebuild exon 6204849 6205046 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; Scaffold002 rebuild exon 6205112 6205293 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; Scaffold002 rebuild exon 6206933 6207026 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; Scaffold002 rebuild exon 6207127 6207150 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.1"; Scaffold002 rebuild transcript 6202975 6208496 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.2"; gene_name "XPC"; annotation "xeroderma pigmentosum group C-complementing protein"; Pfam "[BHD_2] Rad4 beta-hairpin domain 2|[BHD_1] Rad4 beta-hairpin domain 1|[BHD_3] Rad4 beta-hairpin domain 3|[Rad4] Rad4 transglutaminase-like domain"; CDD "DNA repair protein rad4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10838"; similar_genes "XPC_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 6202975 6204630 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.2"; Scaffold002 rebuild exon 6204688 6204732 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.2"; Scaffold002 rebuild exon 6204849 6205046 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.2"; Scaffold002 rebuild exon 6205112 6205293 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.2"; Scaffold002 rebuild exon 6208475 6208496 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.2"; Scaffold002 rebuild transcript 6202975 6205297 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.3"; gene_name "XPC"; annotation "xeroderma pigmentosum group C-complementing protein"; Pfam "[BHD_2] Rad4 beta-hairpin domain 2|[BHD_1] Rad4 beta-hairpin domain 1|[BHD_3] Rad4 beta-hairpin domain 3|[Rad4] Rad4 transglutaminase-like domain"; CDD "DNA repair protein rad4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10838"; similar_genes "XPC_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 6202975 6204630 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.3"; Scaffold002 rebuild exon 6204688 6204732 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.3"; Scaffold002 rebuild exon 6204849 6205046 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.3"; Scaffold002 rebuild exon 6205112 6205297 . + . gene_id "RvY_05493"; transcript_id "RvY_05493.3"; Scaffold002 rebuild transcript 6206905 6209649 . - . gene_id "RvY_05494"; transcript_id "RvY_05494.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6206905 6207402 . - . gene_id "RvY_05494"; transcript_id "RvY_05494.1"; Scaffold002 rebuild exon 6207507 6207685 . - . gene_id "RvY_05494"; transcript_id "RvY_05494.1"; Scaffold002 rebuild exon 6207771 6207881 . - . gene_id "RvY_05494"; transcript_id "RvY_05494.1"; Scaffold002 rebuild exon 6209316 6209649 . - . gene_id "RvY_05494"; transcript_id "RvY_05494.1"; Scaffold002 rebuild transcript 6211014 6222795 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; gene_name "ITPR1"; annotation "Inositol 1,4,5-trisphosphate receptor type 2"; Pfam "[RYDR_ITPR] RIH domain|[Ins145_P3_rec] Inositol 1,4,5-trisphosphate/ryanodine receptor|[MIR]|[Ion_trans] Ion transport protein|[RIH_assoc] RyR and IP3R Homology associated"; KO "K04958"; similar_genes "ITPR2_HUMAN(e-value:1.6e-64;bit-score:243.0)"; Scaffold002 rebuild exon 6211014 6211147 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6211211 6211281 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6211479 6211606 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6211680 6211766 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6211852 6212010 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6212073 6212264 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6212355 6212597 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6212738 6212898 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6212976 6213175 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6213237 6213472 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6213533 6213700 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6213759 6213931 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6213997 6214143 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6214243 6214365 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6214452 6214547 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6214617 6214730 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6214806 6214847 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6214908 6215076 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6215151 6215310 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6215430 6215778 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6215861 6216014 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6216134 6216367 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6216437 6216643 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6216703 6216828 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6216894 6217094 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6217204 6217355 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6217592 6217728 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6217812 6217909 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6217976 6218113 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6218182 6218308 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6218371 6218561 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6218646 6218794 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6218851 6219214 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6219282 6219683 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6219742 6219946 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6220018 6220641 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6220705 6220827 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6220888 6221060 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6221120 6221284 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6221359 6221551 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6221665 6221834 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6221944 6222109 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6222182 6222342 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6222432 6222593 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild exon 6222691 6222795 . + . gene_id "RvY_05495"; transcript_id "RvY_05495.1"; Scaffold002 rebuild transcript 6226985 6235177 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; gene_name "DAG1"; annotation "dystroglycan 1"; Pfam "[DAG1] Dystroglycan (Dystrophin-associated glycoprotein 1)"; KO "K06265"; Scaffold002 rebuild exon 6226985 6227209 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild exon 6232485 6232770 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild exon 6232979 6233709 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild exon 6233818 6234062 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild exon 6234145 6234464 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild exon 6234552 6234688 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild exon 6234842 6235177 . + . gene_id "RvY_05496"; transcript_id "RvY_05496.1"; Scaffold002 rebuild transcript 6235619 6237310 . - . gene_id "RvY_05497"; transcript_id "RvY_05497.1"; product "BUD13 homolog"; gene_name "BUD13"; annotation "BUD13 homolog | pre-mRNA-splicing factor CWC26"; Pfam "[Bud13] Pre-mRNA-splicing factor of RES complex"; KO "K13106"; similar_genes "BUD13_RAT(e-value:2.8e-19;bit-score:93.0)"; Scaffold002 rebuild exon 6235619 6235797 . - . gene_id "RvY_05497"; transcript_id "RvY_05497.1"; Scaffold002 rebuild exon 6235874 6236058 . - . gene_id "RvY_05497"; transcript_id "RvY_05497.1"; Scaffold002 rebuild exon 6236122 6236494 . - . gene_id "RvY_05497"; transcript_id "RvY_05497.1"; Scaffold002 rebuild exon 6236581 6237119 . - . gene_id "RvY_05497"; transcript_id "RvY_05497.1"; Scaffold002 rebuild exon 6237195 6237310 . - . gene_id "RvY_05497"; transcript_id "RvY_05497.1"; Scaffold002 rebuild transcript 6238128 6242321 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; gene_name "MPP5"; annotation "membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)"; Pfam "[Guanylate_kin] Guanylate kinase|[SH3_2] Variant SH3 domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions."; KO "K06091"; similar_genes "MPP5_PONAB(e-value:3.1e-14;bit-score:76.0)"; Scaffold002 rebuild exon 6238128 6238304 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6238371 6238852 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6238932 6239088 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6239154 6239444 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6239912 6239997 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6240078 6240395 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6240755 6241132 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6241226 6241386 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild exon 6241627 6242321 . - . gene_id "RvY_05498"; transcript_id "RvY_05498.1"; Scaffold002 rebuild transcript 6246428 6248238 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold002 rebuild exon 6246428 6246922 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; Scaffold002 rebuild exon 6247025 6247130 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; Scaffold002 rebuild exon 6247225 6247340 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; Scaffold002 rebuild exon 6247499 6247584 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; Scaffold002 rebuild exon 6247703 6247963 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; Scaffold002 rebuild exon 6248058 6248238 . - . gene_id "RvY_05499"; transcript_id "RvY_05499.1"; Scaffold002 rebuild transcript 6249073 6250068 . + . gene_id "RvY_05500"; transcript_id "RvY_05500.1"; gene_name "PSTK"; annotation "O-phosphoseryl-tRNA(Sec) kinase [EC:2.7.1.-]"; Pfam "[AAA_16] AAA ATPase domain|[KTI12] Chromatin associated protein KTI12|[AAA_33] AAA domain"; CDD "L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity."; EC "EC2.7.1.-"; KO "K10837"; Scaffold002 rebuild exon 6249073 6250068 . + . gene_id "RvY_05500"; transcript_id "RvY_05500.1"; Scaffold002 rebuild transcript 6250373 6277486 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Herpes_gI] Alphaherpesvirus glycoprotein I|[Ig_2] Immunoglobulin domain|[Spectrin] Spectrin repeat|[DUF1136] Repeat of unknown function (DUF1136)|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; similar_genes "TITIN_DROME(e-value:2.5e-18;bit-score:90.0)"; Scaffold002 rebuild exon 6250373 6250494 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6250649 6250840 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6250923 6251069 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6251136 6251200 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6251265 6251560 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6251622 6251767 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6251828 6253452 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6253524 6253698 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6253762 6254375 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6254655 6255081 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6255154 6255783 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6255851 6255909 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6256204 6256288 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6256388 6256657 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6256727 6256795 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6256862 6257241 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6257312 6257439 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6257583 6257797 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6258393 6258782 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6258846 6259250 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6259486 6260336 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6260403 6261237 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6261375 6261449 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6261514 6261912 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6262138 6262212 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6262276 6262656 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6262769 6263077 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6263150 6263214 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6263274 6263635 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6263709 6263964 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6264054 6264265 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6264324 6264745 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6265192 6265887 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6266441 6267194 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6267252 6267707 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6267837 6268033 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6268106 6268855 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6268990 6269619 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6269724 6270017 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6270089 6270889 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6271083 6272082 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6272434 6272732 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6272804 6273251 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6273498 6274034 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6274104 6274328 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6274405 6274553 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6274627 6274732 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6274832 6275023 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6275982 6276104 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild exon 6277370 6277486 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.1"; Scaffold002 rebuild transcript 6250373 6277486 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Herpes_gI] Alphaherpesvirus glycoprotein I|[Ig_2] Immunoglobulin domain|[Spectrin] Spectrin repeat|[DUF1136] Repeat of unknown function (DUF1136)|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; similar_genes "TITIN_DROME(e-value:2.5e-18;bit-score:90.0)"; Scaffold002 rebuild exon 6250373 6250494 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6250649 6250840 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6250923 6251069 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6251136 6251200 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6251265 6251560 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6251622 6251767 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6251828 6253452 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6253524 6253698 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6253762 6254375 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6254655 6255081 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6255154 6255783 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6255851 6255909 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6256204 6256288 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6256388 6256657 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6256727 6256795 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6256862 6257241 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6257312 6257439 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6257583 6257797 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6258393 6258782 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6258846 6259250 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6259486 6260336 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6260403 6261237 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6261375 6261449 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6261514 6261912 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6262138 6262212 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6262276 6262656 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6262769 6263077 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6263150 6263214 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6263274 6263635 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6263709 6263964 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6264054 6264265 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6264324 6264745 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6266441 6267194 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6267252 6267707 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6267837 6268033 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6268106 6268855 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6268990 6269619 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6269724 6270017 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6270089 6270889 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6271083 6272082 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6272434 6272732 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6272804 6273251 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6273498 6274034 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6274104 6274328 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6274405 6274553 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6274627 6274732 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6274832 6275023 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6275982 6276104 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild exon 6277370 6277486 . - . gene_id "RvY_05501"; transcript_id "RvY_05501.2"; Scaffold002 rebuild transcript 6279105 6282216 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; annotation "hypothetical protein."; Pfam "[DUF3522]"; similar_genes "TMM8B_HUMAN(e-value:1.5e-07;bit-score:54.0)"; Scaffold002 rebuild exon 6279105 6279302 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6279389 6279433 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6279498 6279603 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6279673 6279858 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6279934 6280015 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6280100 6280391 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6280458 6280634 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6280712 6281443 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild exon 6281593 6282216 . - . gene_id "RvY_05502"; transcript_id "RvY_05502.1"; Scaffold002 rebuild transcript 6283325 6285059 . + . gene_id "RvY_05503"; transcript_id "RvY_05503.1"; gene_name "COG5273"; annotation "putative Probable palmitoyltransferase ZDHHC6"; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDHC6_PONAB(e-value:9.2e-31;bit-score:131.0)"; Scaffold002 rebuild exon 6283325 6283799 . + . gene_id "RvY_05503"; transcript_id "RvY_05503.1"; Scaffold002 rebuild exon 6283877 6283935 . + . gene_id "RvY_05503"; transcript_id "RvY_05503.1"; Scaffold002 rebuild exon 6284056 6284544 . + . gene_id "RvY_05503"; transcript_id "RvY_05503.1"; Scaffold002 rebuild exon 6284610 6285059 . + . gene_id "RvY_05503"; transcript_id "RvY_05503.1"; Scaffold002 rebuild transcript 6285529 6286622 . + . gene_id "RvY_05504"; transcript_id "RvY_05504.1"; annotation "hypothetical protein."; Pfam "[zf-PARP] Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region|[PADR1] PADR1 (NUC008) domain"; EC "EC2.4.2.30"; similar_genes "PARP1_CHICK(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 6285529 6285642 . + . gene_id "RvY_05504"; transcript_id "RvY_05504.1"; Scaffold002 rebuild exon 6285735 6285964 . + . gene_id "RvY_05504"; transcript_id "RvY_05504.1"; Scaffold002 rebuild exon 6286052 6286265 . + . gene_id "RvY_05504"; transcript_id "RvY_05504.1"; Scaffold002 rebuild exon 6286344 6286429 . + . gene_id "RvY_05504"; transcript_id "RvY_05504.1"; Scaffold002 rebuild exon 6286496 6286622 . + . gene_id "RvY_05504"; transcript_id "RvY_05504.1"; Scaffold002 rebuild transcript 6287017 6289850 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; gene_name "PARP"; annotation "Poly [ADP-ribose] polymerase 1"; Pfam "[WGR]|[PARP_reg] Poly(ADP-ribose) polymerase, regulatory domain|[PARP] Poly(ADP-ribose) polymerase catalytic domain"; CDD "Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically Scaffold002 rebuild exon 6287017 6287128 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6287204 6287376 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6287469 6287783 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6287879 6288202 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6288408 6288620 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6288685 6288783 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6288842 6288970 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6289043 6289145 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6289220 6289280 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6289343 6289368 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6289441 6289531 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild exon 6289592 6289850 . + . gene_id "RvY_05505"; transcript_id "RvY_05505.1"; Scaffold002 rebuild transcript 6290121 6290474 . + . gene_id "RvY_05506"; transcript_id "RvY_05506.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6290121 6290196 . + . gene_id "RvY_05506"; transcript_id "RvY_05506.1"; Scaffold002 rebuild exon 6290275 6290474 . + . gene_id "RvY_05506"; transcript_id "RvY_05506.1"; Scaffold002 rebuild transcript 6290934 6293671 . - . gene_id "RvY_05507"; transcript_id "RvY_05507.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6290934 6291336 . - . gene_id "RvY_05507"; transcript_id "RvY_05507.1"; Scaffold002 rebuild exon 6291646 6292765 . - . gene_id "RvY_05507"; transcript_id "RvY_05507.1"; Scaffold002 rebuild exon 6293098 6293671 . - . gene_id "RvY_05507"; transcript_id "RvY_05507.1"; Scaffold002 rebuild transcript 6293915 6294301 . - . gene_id "RvY_05508"; transcript_id "RvY_05508.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6293915 6294301 . - . gene_id "RvY_05508"; transcript_id "RvY_05508.1"; Scaffold002 rebuild transcript 6293915 6294253 . - . gene_id "RvY_05508"; transcript_id "RvY_05508.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6293915 6294253 . - . gene_id "RvY_05508"; transcript_id "RvY_05508.2"; Scaffold002 rebuild transcript 6295231 6295854 . - . gene_id "RvY_05509"; transcript_id "RvY_05509.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 6295231 6295854 . - . gene_id "RvY_05509"; transcript_id "RvY_05509.1"; Scaffold002 rebuild transcript 6296096 6296545 . - . gene_id "RvY_05510"; transcript_id "RvY_05510.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 6296096 6296545 . - . gene_id "RvY_05510"; transcript_id "RvY_05510.1"; Scaffold002 rebuild transcript 6296279 6296476 . + . gene_id "RvY_05511"; transcript_id "RvY_05511.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6296279 6296476 . + . gene_id "RvY_05511"; transcript_id "RvY_05511.1"; Scaffold002 rebuild transcript 6297081 6297812 . - . gene_id "RvY_05512"; transcript_id "RvY_05512.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold002 rebuild exon 6297081 6297812 . - . gene_id "RvY_05512"; transcript_id "RvY_05512.1"; Scaffold002 rebuild transcript 6296701 6297159 . - . gene_id "RvY_05512"; transcript_id "RvY_05512.2"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold002 rebuild exon 6296701 6297159 . - . gene_id "RvY_05512"; transcript_id "RvY_05512.2"; Scaffold002 rebuild transcript 6298536 6301325 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold002 rebuild exon 6298536 6298846 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6298944 6299076 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6299152 6299336 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6299412 6299621 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6299691 6299904 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6299980 6300135 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6300269 6300384 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6300443 6300602 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6300666 6300776 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild exon 6300879 6301325 . + . gene_id "RvY_05513"; transcript_id "RvY_05513.1"; Scaffold002 rebuild transcript 6304252 6305150 . + . gene_id "RvY_05514"; transcript_id "RvY_05514.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6304252 6304312 . + . gene_id "RvY_05514"; transcript_id "RvY_05514.1"; Scaffold002 rebuild exon 6304450 6304612 . + . gene_id "RvY_05514"; transcript_id "RvY_05514.1"; Scaffold002 rebuild exon 6304711 6304770 . + . gene_id "RvY_05514"; transcript_id "RvY_05514.1"; Scaffold002 rebuild exon 6304837 6304938 . + . gene_id "RvY_05514"; transcript_id "RvY_05514.1"; Scaffold002 rebuild exon 6305051 6305150 . + . gene_id "RvY_05514"; transcript_id "RvY_05514.1"; Scaffold002 rebuild transcript 6305387 6306814 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; gene_name "K06990"; annotation "putative Protein MEMO1"; Pfam "[Memo] Memo-like protein"; CDD "Memo-like protein. This family contains members from all branches of life. The molecular function of this protein is unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton."; KO "K06990"; similar_genes "MEMO1_DANRE(e-value:3.1e-46;bit-score:183.0)"; Scaffold002 rebuild exon 6305387 6305629 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; Scaffold002 rebuild exon 6305796 6305872 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; Scaffold002 rebuild exon 6305944 6306311 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; Scaffold002 rebuild exon 6306394 6306462 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; Scaffold002 rebuild exon 6306556 6306646 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; Scaffold002 rebuild exon 6306760 6306814 . - . gene_id "RvY_05515"; transcript_id "RvY_05515.1"; Scaffold002 rebuild transcript 6307466 6307843 . + . gene_id "RvY_05516"; transcript_id "RvY_05516.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6307466 6307843 . + . gene_id "RvY_05516"; transcript_id "RvY_05516.1"; Scaffold002 rebuild transcript 6307444 6307843 . + . gene_id "RvY_05516"; transcript_id "RvY_05516.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6307444 6307586 . + . gene_id "RvY_05516"; transcript_id "RvY_05516.2"; Scaffold002 rebuild exon 6307660 6307843 . + . gene_id "RvY_05516"; transcript_id "RvY_05516.2"; Scaffold002 rebuild transcript 6307989 6319313 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; gene_name "MLL3"; annotation "putative Histone-lysine N-methyltransferase MLL2"; Pfam "[FYRC] F/Y rich C-terminus|[SET]|[FYRN] F/Y-rich N-terminus|[PHD] PHD-finger"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; EC "EC2.1.1.43"; KO "K09188"; similar_genes "MLL2_HUMAN(e-value:1.2e-49;bit-score:194.0)"; Scaffold002 rebuild exon 6307989 6308393 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6308580 6309078 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6309299 6309813 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6309873 6310148 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6310219 6310729 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6310962 6311470 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6311534 6311824 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6312136 6312585 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6312711 6312977 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6313037 6313825 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6314067 6314715 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6314822 6315165 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6315356 6315858 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6315937 6316169 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6316229 6316581 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6316852 6317384 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6317462 6317582 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6317655 6317817 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6317893 6318166 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6318486 6318819 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6318897 6319085 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild exon 6319221 6319313 . + . gene_id "RvY_05517"; transcript_id "RvY_05517.1"; Scaffold002 rebuild transcript 6321901 6326786 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; annotation "hypothetical protein."; Pfam "[DUF3504]"; Scaffold002 rebuild exon 6321901 6322559 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild exon 6324097 6324338 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild exon 6324398 6324808 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild exon 6324874 6325136 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild exon 6325199 6326246 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild exon 6326334 6326447 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild exon 6326533 6326786 . + . gene_id "RvY_05518"; transcript_id "RvY_05518.1"; Scaffold002 rebuild transcript 6327031 6327975 . - . gene_id "RvY_05519"; transcript_id "RvY_05519.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6327031 6327975 . - . gene_id "RvY_05519"; transcript_id "RvY_05519.1"; Scaffold002 rebuild transcript 6329201 6330256 . - . gene_id "RvY_05520"; transcript_id "RvY_05520.1"; annotation "hypothetical protein."; Pfam "[Arm] Armadillo/beta-catenin-like repeat|[HEAT_2] HEAT repeats"; Scaffold002 rebuild exon 6329201 6330256 . - . gene_id "RvY_05520"; transcript_id "RvY_05520.1"; Scaffold002 rebuild transcript 6331644 6333826 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; gene_name "HNRNPABD"; annotation "heterogeneous nuclear ribonucleoprotein A/B/D"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K13044"; Scaffold002 rebuild exon 6331644 6331813 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; Scaffold002 rebuild exon 6331877 6332213 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; Scaffold002 rebuild exon 6332286 6332591 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; Scaffold002 rebuild exon 6332665 6332744 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; Scaffold002 rebuild exon 6332815 6332903 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; Scaffold002 rebuild exon 6333762 6333826 . - . gene_id "RvY_05521"; transcript_id "RvY_05521.1"; Scaffold002 rebuild transcript 6334495 6335767 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; gene_name "PPIH"; annotation "putative Peptidyl-prolyl cis-trans isomerase H"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD"; CDD "cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase Scaffold002 rebuild exon 6334495 6334575 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild exon 6334645 6334709 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild exon 6334805 6334873 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild exon 6335020 6335062 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild exon 6335175 6335276 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild exon 6335457 6335619 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild exon 6335733 6335767 . + . gene_id "RvY_05522"; transcript_id "RvY_05522.1"; Scaffold002 rebuild transcript 6338306 6341349 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6338306 6338811 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild exon 6338884 6339080 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild exon 6339147 6339266 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild exon 6339561 6340034 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild exon 6340197 6340432 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild exon 6340504 6340804 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild exon 6341135 6341349 . + . gene_id "RvY_05523"; transcript_id "RvY_05523.1"; Scaffold002 rebuild transcript 6342456 6343258 . + . gene_id "RvY_05524"; transcript_id "RvY_05524.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6342456 6342543 . + . gene_id "RvY_05524"; transcript_id "RvY_05524.1"; Scaffold002 rebuild exon 6342608 6342824 . + . gene_id "RvY_05524"; transcript_id "RvY_05524.1"; Scaffold002 rebuild exon 6342992 6343106 . + . gene_id "RvY_05524"; transcript_id "RvY_05524.1"; Scaffold002 rebuild exon 6343175 6343258 . + . gene_id "RvY_05524"; transcript_id "RvY_05524.1"; Scaffold002 rebuild transcript 6348037 6349702 . + . gene_id "RvY_05525"; transcript_id "RvY_05525.1"; gene_name "FH"; annotation "hypothetical protein."; Pfam "[Fork_head] Fork head domain"; CDD "FORKHEAD. FORKHEAD, also known as a ""winged helix"""; similar_genes "FOXJ2_MOUSE(e-value:7.2e-16;bit-score:82.0)"; Scaffold002 rebuild exon 6348037 6348739 . + . gene_id "RvY_05525"; transcript_id "RvY_05525.1"; Scaffold002 rebuild exon 6348823 6348969 . + . gene_id "RvY_05525"; transcript_id "RvY_05525.1"; Scaffold002 rebuild exon 6349314 6349702 . + . gene_id "RvY_05525"; transcript_id "RvY_05525.1"; Scaffold002 rebuild transcript 6350384 6352354 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6350384 6350473 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; Scaffold002 rebuild exon 6350565 6350818 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; Scaffold002 rebuild exon 6350900 6351073 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; Scaffold002 rebuild exon 6351153 6351687 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; Scaffold002 rebuild exon 6351769 6351985 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; Scaffold002 rebuild exon 6352044 6352354 . + . gene_id "RvY_05526"; transcript_id "RvY_05526.1"; Scaffold002 rebuild transcript 6352651 6355145 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; gene_name "HIF1B"; annotation "putative Aryl hydrocarbon receptor nuclear translocator"; Pfam "[PAS_3] PAS fold|[PAS] PAS fold|[HLH] Helix-loop-helix DNA-binding domain"; KO "K09097"; similar_genes "ARNT_HUMAN(e-value:7.8e-45;bit-score:178.0)"; Scaffold002 rebuild exon 6352651 6353087 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild exon 6353291 6353562 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild exon 6353627 6353777 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild exon 6353842 6353948 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild exon 6354003 6354418 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild exon 6354538 6354860 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild exon 6354944 6355145 . - . gene_id "RvY_05527"; transcript_id "RvY_05527.1"; Scaffold002 rebuild transcript 6358551 6361787 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; gene_name "LIPE"; annotation "putative Hormone-sensitive lipase"; Pfam "[DUF2424]|[Abhydrolase_3] alpha/beta hydrolase fold|[HSL_N] Hormone-sensitive lipase (HSL) N-terminus"; EC "EC3.1.1.79"; KO "K07188"; similar_genes "LIPS_RAT(e-value:2.6e-26;bit-score:116.0)"; Scaffold002 rebuild exon 6358551 6359049 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6359244 6359662 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6359752 6359793 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6359854 6359970 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6360026 6360230 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6360293 6360328 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6360441 6360563 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6360649 6360744 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6360873 6361168 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6361228 6361422 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6361495 6361531 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild exon 6361609 6361787 . + . gene_id "RvY_05528"; transcript_id "RvY_05528.1"; Scaffold002 rebuild transcript 6362729 6363653 . + . gene_id "RvY_05529"; transcript_id "RvY_05529.1"; gene_name "(1)UBE2I"; annotation "(1)SUMO-conjugating enzyme UBC9-B(2)hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "(1)EC6.3.2.-|EC6.3.2.19"; KO "(1)K10577"; similar_genes "(1)UBC9B_DANRE(e-value:5.2e-63;bit-score:238.0)"; Scaffold002 rebuild exon 6362729 6362779 . + . gene_id "RvY_05529"; transcript_id "RvY_05529.1"; Scaffold002 rebuild exon 6363038 6363210 . + . gene_id "RvY_05529"; transcript_id "RvY_05529.1"; Scaffold002 rebuild exon 6363395 6363653 . + . gene_id "RvY_05529"; transcript_id "RvY_05529.1"; Scaffold002 rebuild transcript 6363538 6363924 . + . gene_id "RvY_05529"; transcript_id "RvY_05529.2"; gene_name "(1)UBE2I"; annotation "(1)SUMO-conjugating enzyme UBC9-B(2)hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "(1)EC6.3.2.-|EC6.3.2.19"; KO "(1)K10577"; similar_genes "(1)UBC9B_DANRE(e-value:5.2e-63;bit-score:238.0)"; Scaffold002 rebuild exon 6363538 6363924 . + . gene_id "RvY_05529"; transcript_id "RvY_05529.2"; Scaffold002 rebuild transcript 6364187 6397613 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; gene_name "S_TKc"; annotation "putative Titin"; Pfam "[I-set] Immunoglobulin I-set domain|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|(3)[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(3)[C2-set_2] CD80-like C2-set immunoglobulin domain|[RhoGEF]|[Ig_3] Immunoglobulin domain|(3)[Receptor_2B4] Natural killer cell receptor 2B4"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; similar_genes "TITIN_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold002 rebuild exon 6364187 6364400 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6364474 6364623 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6364708 6364783 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6364857 6365317 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6365390 6365573 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6365639 6365823 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6365888 6366798 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6366999 6367602 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6367731 6369248 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6369336 6370428 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6370491 6371225 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6371289 6371912 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6371976 6373208 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6373289 6373588 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6373661 6374042 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6374169 6374689 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6374772 6375704 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6375790 6376503 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6376566 6377234 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6377308 6377601 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6377835 6377897 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6378383 6379856 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6380804 6381609 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6381674 6382135 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6382234 6383277 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6383370 6383876 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6383951 6384280 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6384461 6387685 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6387877 6388185 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6388646 6389296 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6389772 6390419 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6390478 6391243 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6391326 6391930 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6392160 6393065 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6393173 6393248 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6393321 6393593 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6393655 6394227 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6394286 6394467 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6394536 6394604 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6394848 6395102 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6395409 6395565 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6395650 6395805 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6395871 6396137 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6396208 6396303 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6396452 6396521 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6396683 6396850 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6396934 6397235 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild exon 6397467 6397613 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.1"; Scaffold002 rebuild transcript 6364187 6397613 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; gene_name "S_TKc"; annotation "putative Titin"; Pfam "[I-set] Immunoglobulin I-set domain|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|(3)[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(3)[C2-set_2] CD80-like C2-set immunoglobulin domain|[RhoGEF]|[Ig_3] Immunoglobulin domain|(3)[Receptor_2B4] Natural killer cell receptor 2B4"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; similar_genes "TITIN_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold002 rebuild exon 6364187 6364400 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6364474 6364623 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6364708 6364783 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6364857 6365317 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6365390 6365573 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6365639 6365823 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6365888 6366798 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6366999 6367602 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6367731 6369248 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6369336 6370428 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6370491 6371225 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6371289 6371912 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6371976 6373208 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6373289 6373588 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6373661 6374042 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6374169 6374689 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6374772 6375704 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6375790 6376503 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6376566 6377234 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6377308 6377607 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6377835 6377897 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6378383 6379856 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6380804 6381609 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6381674 6382135 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6382234 6383277 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6383370 6383876 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6383951 6384280 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6388646 6389296 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6389772 6390419 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6390478 6391243 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6391326 6391930 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6392160 6393065 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6393173 6393248 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6393321 6393593 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6393655 6394227 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6394286 6394467 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6394536 6394604 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6394848 6395102 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6395409 6395565 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6395650 6395805 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6395871 6396137 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6396208 6396303 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6396452 6396521 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6396683 6396850 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6396934 6397235 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild exon 6397467 6397613 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.2"; Scaffold002 rebuild transcript 6364187 6397613 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; gene_name "S_TKc"; annotation "putative Titin"; Pfam "[I-set] Immunoglobulin I-set domain|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|(3)[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(3)[C2-set_2] CD80-like C2-set immunoglobulin domain|[RhoGEF]|[Ig_3] Immunoglobulin domain|(3)[Receptor_2B4] Natural killer cell receptor 2B4"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; similar_genes "TITIN_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold002 rebuild exon 6364187 6364400 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6364474 6364623 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6364708 6364783 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6364857 6365317 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6365390 6365573 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6365639 6365823 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6365888 6366798 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6366999 6367602 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6367731 6369248 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6369336 6370428 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6370491 6371225 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6371289 6371912 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6371976 6373208 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6373289 6373588 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6373661 6374042 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6374169 6374689 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6374772 6375704 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6375790 6376503 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6376566 6377234 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6377308 6377607 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6377835 6377897 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6388646 6389296 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6389772 6390419 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6390478 6391243 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6391326 6391930 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6392160 6393065 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6393173 6393248 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6393321 6393593 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6393655 6394227 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6394286 6394467 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6394536 6394604 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6394848 6395102 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6395409 6395565 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6395650 6395805 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6395871 6396137 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6396208 6396303 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6396452 6396521 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6396683 6396850 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6396934 6397235 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild exon 6397467 6397613 . - . gene_id "RvY_05530"; transcript_id "RvY_05530.3"; Scaffold002 rebuild transcript 6401184 6401776 . - . gene_id "RvY_05531"; transcript_id "RvY_05531.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6401184 6401435 . - . gene_id "RvY_05531"; transcript_id "RvY_05531.1"; Scaffold002 rebuild exon 6401723 6401776 . - . gene_id "RvY_05531"; transcript_id "RvY_05531.1"; Scaffold002 rebuild transcript 6402254 6412072 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.1"; gene_name "ONECUT1"; annotation "putative Homeobox protein onecut"; Pfam "[Homeobox]|[CUT]"; KO "K08026"; similar_genes "ONEC_DROME(e-value:1.9e-37;bit-score:153.0)"; Scaffold002 rebuild exon 6402254 6402334 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.1"; Scaffold002 rebuild exon 6404060 6405503 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.1"; Scaffold002 rebuild exon 6411556 6411615 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.1"; Scaffold002 rebuild exon 6411705 6412072 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.1"; Scaffold002 rebuild transcript 6402254 6412072 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.2"; gene_name "ONECUT1"; annotation "putative Homeobox protein onecut"; Pfam "[Homeobox]|[CUT]"; KO "K08026"; similar_genes "ONEC_DROME(e-value:1.9e-37;bit-score:153.0)"; Scaffold002 rebuild exon 6402254 6402334 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.2"; Scaffold002 rebuild exon 6404060 6404660 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.2"; Scaffold002 rebuild exon 6404856 6405503 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.2"; Scaffold002 rebuild exon 6411556 6411615 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.2"; Scaffold002 rebuild exon 6411705 6412072 . + . gene_id "RvY_05532"; transcript_id "RvY_05532.2"; Scaffold002 rebuild transcript 6415103 6415949 . - . gene_id "RvY_05533"; transcript_id "RvY_05533.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6415103 6415403 . - . gene_id "RvY_05533"; transcript_id "RvY_05533.1"; Scaffold002 rebuild exon 6415483 6415949 . - . gene_id "RvY_05533"; transcript_id "RvY_05533.1"; Scaffold002 rebuild transcript 6416977 6417873 . + . gene_id "RvY_05534"; transcript_id "RvY_05534.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6416977 6417394 . + . gene_id "RvY_05534"; transcript_id "RvY_05534.1"; Scaffold002 rebuild exon 6417588 6417701 . + . gene_id "RvY_05534"; transcript_id "RvY_05534.1"; Scaffold002 rebuild exon 6417785 6417873 . + . gene_id "RvY_05534"; transcript_id "RvY_05534.1"; Scaffold002 rebuild transcript 6417907 6418092 . + . gene_id "RvY_05535"; transcript_id "RvY_05535.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6417907 6418092 . + . gene_id "RvY_05535"; transcript_id "RvY_05535.1"; Scaffold002 rebuild transcript 6419188 6419544 . + . gene_id "RvY_05536"; transcript_id "RvY_05536.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6419188 6419239 . + . gene_id "RvY_05536"; transcript_id "RvY_05536.1"; Scaffold002 rebuild exon 6419366 6419544 . + . gene_id "RvY_05536"; transcript_id "RvY_05536.1"; Scaffold002 rebuild transcript 6420847 6423120 . + . gene_id "RvY_05537"; transcript_id "RvY_05537.1"; annotation "hypothetical protein."; Pfam "[Tau95] RNA polymerase III transcription factor (TF)IIIC subunit"; KO "K15202"; Scaffold002 rebuild exon 6420847 6421633 . + . gene_id "RvY_05537"; transcript_id "RvY_05537.1"; Scaffold002 rebuild exon 6421881 6422420 . + . gene_id "RvY_05537"; transcript_id "RvY_05537.1"; Scaffold002 rebuild exon 6422705 6423120 . + . gene_id "RvY_05537"; transcript_id "RvY_05537.1"; Scaffold002 rebuild transcript 6424871 6426335 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.1"; gene_name "(1)WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 6424871 6425258 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.1"; Scaffold002 rebuild exon 6425327 6425919 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.1"; Scaffold002 rebuild exon 6425976 6426335 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.1"; Scaffold002 rebuild transcript 6424668 6425925 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.2"; gene_name "(1)WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold002 rebuild exon 6424668 6424733 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.2"; Scaffold002 rebuild exon 6424811 6425258 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.2"; Scaffold002 rebuild exon 6425327 6425925 . + . gene_id "RvY_05538"; transcript_id "RvY_05538.2"; Scaffold002 rebuild transcript 6426378 6429138 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold002 rebuild exon 6426378 6426424 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6426492 6426588 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6426648 6426837 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6426910 6427374 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6427470 6427619 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6427683 6427827 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6427917 6428163 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6428221 6428836 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild exon 6428999 6429138 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.1"; Scaffold002 rebuild transcript 6426454 6429138 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold002 rebuild exon 6426454 6426588 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6426648 6426837 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6426910 6427374 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6427470 6427619 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6427683 6427827 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6427917 6428163 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6428221 6428836 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild exon 6428999 6429138 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.2"; Scaffold002 rebuild transcript 6427679 6429138 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.3"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold002 rebuild exon 6427679 6427827 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.3"; Scaffold002 rebuild exon 6427917 6428163 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.3"; Scaffold002 rebuild exon 6428221 6428836 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.3"; Scaffold002 rebuild exon 6428999 6429138 . - . gene_id "RvY_05539"; transcript_id "RvY_05539.3"; Scaffold002 rebuild transcript 6429694 6430985 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.1"; gene_name "K00565"; annotation "putative mRNA cap guanine-N7 methyltransferase"; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Pox_MCEL] mRNA capping enzyme|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "mRNA capping enzyme. This family of enzymes are related to pfam03919."; EC "EC2.1.1.56"; KO "K00565"; similar_genes "MCES_XENLA(e-value:2.6e-41;bit-score:166.0)"; Scaffold002 rebuild exon 6429694 6430238 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.1"; Scaffold002 rebuild exon 6430318 6430600 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.1"; Scaffold002 rebuild exon 6430677 6430985 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.1"; Scaffold002 rebuild transcript 6429694 6430921 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.2"; gene_name "K00565"; annotation "putative mRNA cap guanine-N7 methyltransferase"; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Pox_MCEL] mRNA capping enzyme|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "mRNA capping enzyme. This family of enzymes are related to pfam03919."; EC "EC2.1.1.56"; KO "K00565"; similar_genes "MCES_XENLA(e-value:2.6e-41;bit-score:166.0)"; Scaffold002 rebuild exon 6429694 6430238 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.2"; Scaffold002 rebuild exon 6430318 6430600 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.2"; Scaffold002 rebuild exon 6430677 6430772 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.2"; Scaffold002 rebuild exon 6430850 6430921 . + . gene_id "RvY_05540"; transcript_id "RvY_05540.2"; Scaffold002 rebuild transcript 6432495 6433614 . - . gene_id "RvY_05541"; transcript_id "RvY_05541.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6432495 6432595 . - . gene_id "RvY_05541"; transcript_id "RvY_05541.1"; Scaffold002 rebuild exon 6432726 6432781 . - . gene_id "RvY_05541"; transcript_id "RvY_05541.1"; Scaffold002 rebuild exon 6433378 6433487 . - . gene_id "RvY_05541"; transcript_id "RvY_05541.1"; Scaffold002 rebuild exon 6433591 6433614 . - . gene_id "RvY_05541"; transcript_id "RvY_05541.1"; Scaffold002 rebuild transcript 6435239 6435592 . - . gene_id "RvY_05542"; transcript_id "RvY_05542.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6435239 6435592 . - . gene_id "RvY_05542"; transcript_id "RvY_05542.1"; Scaffold002 rebuild transcript 6435304 6435756 . - . gene_id "RvY_05542"; transcript_id "RvY_05542.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6435304 6435312 . - . gene_id "RvY_05542"; transcript_id "RvY_05542.2"; Scaffold002 rebuild exon 6435451 6435668 . - . gene_id "RvY_05542"; transcript_id "RvY_05542.2"; Scaffold002 rebuild exon 6435726 6435756 . - . gene_id "RvY_05542"; transcript_id "RvY_05542.2"; Scaffold002 rebuild transcript 6440599 6444468 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; annotation "hypothetical protein."; Pfam "[Npa1] Ribosome 60S biogenesis N-terminal"; KO "K14861"; Scaffold002 rebuild exon 6440599 6441056 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; Scaffold002 rebuild exon 6441150 6441523 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; Scaffold002 rebuild exon 6441687 6442095 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; Scaffold002 rebuild exon 6442199 6442538 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; Scaffold002 rebuild exon 6442646 6443660 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; Scaffold002 rebuild exon 6443753 6444468 . - . gene_id "RvY_05543"; transcript_id "RvY_05543.1"; Scaffold002 rebuild transcript 6445357 6447498 . + . gene_id "RvY_05544"; transcript_id "RvY_05544.1"; gene_name "FZD1"; annotation "putative Frizzled-1"; Pfam "[Fz]|[Frizzled] Frizzled/Smoothened family membrane region"; KO "K02432"; similar_genes "FZD1_XENLA(e-value:1.7e-42;bit-score:170.0)"; Scaffold002 rebuild exon 6445357 6445975 . + . gene_id "RvY_05544"; transcript_id "RvY_05544.1"; Scaffold002 rebuild exon 6446037 6446618 . + . gene_id "RvY_05544"; transcript_id "RvY_05544.1"; Scaffold002 rebuild exon 6446867 6447498 . + . gene_id "RvY_05544"; transcript_id "RvY_05544.1"; Scaffold002 rebuild transcript 6447912 6449458 . - . gene_id "RvY_05545"; transcript_id "RvY_05545.1"; gene_name "ERO1L"; annotation "ERO1-like protein alpha [EC:1.8.4.-]"; Pfam "[ERO1] Endoplasmic Reticulum Oxidoreductin 1 (ERO1)"; EC "EC1.8.4.-"; KO "K10950"; similar_genes "ERO1B_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold002 rebuild exon 6447912 6448752 . - . gene_id "RvY_05545"; transcript_id "RvY_05545.1"; Scaffold002 rebuild exon 6448860 6449458 . - . gene_id "RvY_05545"; transcript_id "RvY_05545.1"; Scaffold002 rebuild transcript 6450177 6450818 . + . gene_id "RvY_05546"; transcript_id "RvY_05546.1"; gene_name "K07579"; annotation "putative methylase"; Pfam "[Methyltransf_26] Methyltransferase domain|[Cons_hypoth95] Conserved hypothetical protein 95|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[UPF0020] Putative RNA methylase family UPF0020|[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|[MTS] Methyltransferase small domain"; CDD "Predicted RNA methylase [Translation, ribosomal structure and biogenesis]"; EC "EC2.1.1.-"; KO "K07579"; similar_genes "METL5_MOUSE(e-value:6.6e-23;bit-score:105.0)"; Scaffold002 rebuild exon 6450177 6450818 . + . gene_id "RvY_05546"; transcript_id "RvY_05546.1"; Scaffold002 rebuild transcript 6451427 6452384 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; gene_name "Clat_adaptor_s"; annotation "putative Coatomer subunit zeta-1"; Pfam "[Clat_adaptor_s] Clathrin adaptor complex small chain"; CDD "Clathrin adaptor complex small chain."; similar_genes "COPZ1_BOVIN(e-value:4.1e-31;bit-score:132.0)"; Scaffold002 rebuild exon 6451427 6451444 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; Scaffold002 rebuild exon 6451552 6451620 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; Scaffold002 rebuild exon 6451680 6451761 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; Scaffold002 rebuild exon 6451852 6451943 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; Scaffold002 rebuild exon 6452027 6452160 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; Scaffold002 rebuild exon 6452243 6452384 . + . gene_id "RvY_05547"; transcript_id "RvY_05547.1"; Scaffold002 rebuild transcript 6452503 6453221 . - . gene_id "RvY_05548"; transcript_id "RvY_05548.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold002 rebuild exon 6452503 6452744 . - . gene_id "RvY_05548"; transcript_id "RvY_05548.1"; Scaffold002 rebuild exon 6452803 6452968 . - . gene_id "RvY_05548"; transcript_id "RvY_05548.1"; Scaffold002 rebuild exon 6453051 6453221 . - . gene_id "RvY_05548"; transcript_id "RvY_05548.1"; Scaffold002 rebuild transcript 6453280 6454265 . - . gene_id "RvY_05549"; transcript_id "RvY_05549.1"; gene_name "ZP"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; CDD "Zona pellucida (ZP) domain. ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan)."; Scaffold002 rebuild exon 6453280 6453520 . - . gene_id "RvY_05549"; transcript_id "RvY_05549.1"; Scaffold002 rebuild exon 6453583 6453716 . - . gene_id "RvY_05549"; transcript_id "RvY_05549.1"; Scaffold002 rebuild exon 6453781 6453980 . - . gene_id "RvY_05549"; transcript_id "RvY_05549.1"; Scaffold002 rebuild exon 6454124 6454265 . - . gene_id "RvY_05549"; transcript_id "RvY_05549.1"; Scaffold002 rebuild transcript 6455622 6457089 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "(1)K1C9_CANFA(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6455622 6456072 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild exon 6456143 6456163 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild exon 6456242 6456276 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild exon 6456350 6456401 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild exon 6456465 6456622 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild exon 6456686 6456907 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild exon 6456997 6457089 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.1"; Scaffold002 rebuild transcript 6456139 6457089 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "(1)K1C9_CANFA(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6456139 6456163 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; Scaffold002 rebuild exon 6456242 6456276 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; Scaffold002 rebuild exon 6456350 6456401 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; Scaffold002 rebuild exon 6456465 6456622 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; Scaffold002 rebuild exon 6456686 6456907 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; Scaffold002 rebuild exon 6456997 6457089 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.2"; Scaffold002 rebuild transcript 6456238 6457089 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.3"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "(1)K1C9_CANFA(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6456238 6456276 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.3"; Scaffold002 rebuild exon 6456350 6456401 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.3"; Scaffold002 rebuild exon 6456465 6456622 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.3"; Scaffold002 rebuild exon 6456686 6456907 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.3"; Scaffold002 rebuild exon 6456997 6457089 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.3"; Scaffold002 rebuild transcript 6455525 6456061 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.4"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "(1)K1C9_CANFA(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6455525 6456061 . - . gene_id "RvY_05550"; transcript_id "RvY_05550.4"; Scaffold002 rebuild transcript 6457768 6458673 . - . gene_id "RvY_05551"; transcript_id "RvY_05551.1"; gene_name "rpsR"; annotation "hypothetical protein."; Pfam "[Ribosomal_S18] Ribosomal protein S18"; CDD "30S ribosomal protein S18; Reviewed"; Scaffold002 rebuild exon 6457768 6457853 . - . gene_id "RvY_05551"; transcript_id "RvY_05551.1"; Scaffold002 rebuild exon 6457951 6458077 . - . gene_id "RvY_05551"; transcript_id "RvY_05551.1"; Scaffold002 rebuild exon 6458173 6458256 . - . gene_id "RvY_05551"; transcript_id "RvY_05551.1"; Scaffold002 rebuild exon 6458335 6458528 . - . gene_id "RvY_05551"; transcript_id "RvY_05551.1"; Scaffold002 rebuild exon 6458598 6458673 . - . gene_id "RvY_05551"; transcript_id "RvY_05551.1"; Scaffold002 rebuild transcript 6459146 6460797 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; gene_name "LSC2"; annotation "Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"; Pfam "[ATP-grasp_2] ATP-grasp domain|[ATP-grasp_5] ATP-grasp domain|[Ligase_CoA] CoA-ligase"; CDD "succinyl-CoA synthetase subunit beta; Provisional"; EC "EC6.2.1.4|EC6.2.1.5"; KO "K01900"; similar_genes "SUCB2_PIG(e-value:8.8e-78;bit-score:287.0)"; Scaffold002 rebuild exon 6459146 6459874 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; Scaffold002 rebuild exon 6459935 6459997 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; Scaffold002 rebuild exon 6460067 6460205 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; Scaffold002 rebuild exon 6460284 6460315 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; Scaffold002 rebuild exon 6460382 6460613 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; Scaffold002 rebuild exon 6460685 6460797 . + . gene_id "RvY_05552"; transcript_id "RvY_05552.1"; Scaffold002 rebuild transcript 6461384 6462647 . + . gene_id "RvY_05553"; transcript_id "RvY_05553.1"; gene_name "PBP1_iGluR_Kainate"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined."; Scaffold002 rebuild exon 6461384 6461471 . + . gene_id "RvY_05553"; transcript_id "RvY_05553.1"; Scaffold002 rebuild exon 6461558 6461722 . + . gene_id "RvY_05553"; transcript_id "RvY_05553.1"; Scaffold002 rebuild exon 6461787 6462038 . + . gene_id "RvY_05553"; transcript_id "RvY_05553.1"; Scaffold002 rebuild exon 6462140 6462363 . + . gene_id "RvY_05553"; transcript_id "RvY_05553.1"; Scaffold002 rebuild exon 6462444 6462647 . + . gene_id "RvY_05553"; transcript_id "RvY_05553.1"; Scaffold002 rebuild transcript 6462656 6465046 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; annotation "putative Glutamate receptor, ionotropic kainate 2"; Pfam "(1,2)[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; similar_genes "GRIK2_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold002 rebuild exon 6462656 6462829 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild exon 6462887 6463105 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild exon 6463327 6463941 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild exon 6464009 6464158 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild exon 6464243 6464477 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild exon 6464542 6464807 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild exon 6464876 6465046 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.1"; Scaffold002 rebuild transcript 6462656 6465046 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; annotation "putative Glutamate receptor, ionotropic kainate 2"; Pfam "(1,2)[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; similar_genes "GRIK2_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold002 rebuild exon 6462656 6462829 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild exon 6462887 6463105 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild exon 6463327 6463941 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild exon 6464009 6464158 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild exon 6464243 6464426 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild exon 6464542 6464807 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild exon 6464876 6465046 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.2"; Scaffold002 rebuild transcript 6463342 6464620 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.3"; annotation "putative Glutamate receptor, ionotropic kainate 2"; Pfam "(1,2)[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; similar_genes "GRIK2_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold002 rebuild exon 6463342 6463941 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.3"; Scaffold002 rebuild exon 6464009 6464158 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.3"; Scaffold002 rebuild exon 6464243 6464620 . + . gene_id "RvY_05554"; transcript_id "RvY_05554.3"; Scaffold002 rebuild transcript 6465429 6469535 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold002 rebuild exon 6465429 6465654 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6465793 6465893 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6465961 6466017 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6466089 6466569 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6466668 6466921 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6467379 6467502 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6468244 6468411 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild exon 6469261 6469535 . - . gene_id "RvY_05555"; transcript_id "RvY_05555.1"; Scaffold002 rebuild transcript 6470859 6473137 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6470859 6470936 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6471043 6471339 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6471582 6471713 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6471785 6472003 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6472159 6472305 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6472418 6472669 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6472789 6472968 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild exon 6473075 6473137 . - . gene_id "RvY_05556"; transcript_id "RvY_05556.1"; Scaffold002 rebuild transcript 6475208 6479005 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6475208 6476122 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild exon 6476218 6476306 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild exon 6476384 6476550 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild exon 6477163 6477578 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild exon 6477809 6478149 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild exon 6478345 6478411 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild exon 6478829 6479005 . - . gene_id "RvY_05557"; transcript_id "RvY_05557.1"; Scaffold002 rebuild transcript 6479264 6479871 . + . gene_id "RvY_05558"; transcript_id "RvY_05558.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6479264 6479308 . + . gene_id "RvY_05558"; transcript_id "RvY_05558.1"; Scaffold002 rebuild exon 6479539 6479871 . + . gene_id "RvY_05558"; transcript_id "RvY_05558.1"; Scaffold002 rebuild transcript 6479135 6479665 . + . gene_id "RvY_05558"; transcript_id "RvY_05558.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6479135 6479334 . + . gene_id "RvY_05558"; transcript_id "RvY_05558.2"; Scaffold002 rebuild exon 6479539 6479665 . + . gene_id "RvY_05558"; transcript_id "RvY_05558.2"; Scaffold002 rebuild transcript 6480780 6484003 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; gene_name "VLCAD"; annotation "hypothetical protein."; Pfam "[Acyl-CoA_dh_N] Acyl-CoA dehydrogenase, N-terminal domain|[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "Very long chain acyl-CoA dehydrogenase (VLCAD). VLCAD acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD, which is a homodimer."; Scaffold002 rebuild exon 6480780 6480877 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6480988 6481060 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6481126 6481254 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6481321 6481398 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6481484 6481607 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6481669 6481748 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6481847 6481975 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6482038 6482157 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6482244 6482314 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6482380 6482455 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6482524 6482703 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6482769 6482964 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6483035 6483135 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6483202 6483314 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6483390 6483491 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6483590 6483680 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild exon 6483758 6484003 . - . gene_id "RvY_05559"; transcript_id "RvY_05559.1"; Scaffold002 rebuild transcript 6484661 6486202 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; annotation "hypothetical protein."; Pfam "[GRAM]|[WWbp] WW-domain ligand protein"; similar_genes "(1,3)WBP2L_BOVIN(e-value:3.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 6484661 6484716 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6484787 6484886 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6485003 6485234 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6485351 6485494 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6485576 6485631 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6485795 6485831 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6485901 6486109 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild exon 6486170 6486202 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.1"; Scaffold002 rebuild transcript 6485151 6486287 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; annotation "hypothetical protein."; Pfam "[GRAM]|[WWbp] WW-domain ligand protein"; similar_genes "(1,3)WBP2L_BOVIN(e-value:3.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 6485151 6485234 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; Scaffold002 rebuild exon 6485351 6485494 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; Scaffold002 rebuild exon 6485576 6485631 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; Scaffold002 rebuild exon 6485795 6485831 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; Scaffold002 rebuild exon 6485901 6486109 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; Scaffold002 rebuild exon 6486170 6486287 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.2"; Scaffold002 rebuild transcript 6484661 6485649 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.3"; annotation "hypothetical protein."; Pfam "[GRAM]|[WWbp] WW-domain ligand protein"; similar_genes "(1,3)WBP2L_BOVIN(e-value:3.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 6484661 6484716 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.3"; Scaffold002 rebuild exon 6484787 6484886 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.3"; Scaffold002 rebuild exon 6485003 6485234 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.3"; Scaffold002 rebuild exon 6485351 6485494 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.3"; Scaffold002 rebuild exon 6485576 6485649 . + . gene_id "RvY_05560"; transcript_id "RvY_05560.3"; Scaffold002 rebuild transcript 6486609 6490303 . - . gene_id "RvY_05561"; transcript_id "RvY_05561.1"; gene_name "FZD5"; annotation "putative Frizzled-2"; Pfam "[Fz]|[Frizzled] Frizzled/Smoothened family membrane region"; KO "K02375"; similar_genes "FRIZ2_DROME(e-value:1.5e-45;bit-score:180.0)"; Scaffold002 rebuild exon 6486609 6487329 . - . gene_id "RvY_05561"; transcript_id "RvY_05561.1"; Scaffold002 rebuild exon 6487624 6488269 . - . gene_id "RvY_05561"; transcript_id "RvY_05561.1"; Scaffold002 rebuild exon 6488378 6488720 . - . gene_id "RvY_05561"; transcript_id "RvY_05561.1"; Scaffold002 rebuild exon 6490196 6490303 . - . gene_id "RvY_05561"; transcript_id "RvY_05561.1"; Scaffold002 rebuild transcript 6491218 6491379 . - . gene_id "RvY_05562"; transcript_id "RvY_05562.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6491218 6491379 . - . gene_id "RvY_05562"; transcript_id "RvY_05562.1"; Scaffold002 rebuild transcript 6492102 6492314 . + . gene_id "RvY_05563"; transcript_id "RvY_05563.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6492102 6492314 . + . gene_id "RvY_05563"; transcript_id "RvY_05563.1"; Scaffold002 rebuild transcript 6494325 6494516 . + . gene_id "RvY_05564"; transcript_id "RvY_05564.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6494325 6494516 . + . gene_id "RvY_05564"; transcript_id "RvY_05564.1"; Scaffold002 rebuild transcript 6494537 6495402 . - . gene_id "RvY_05565"; transcript_id "RvY_05565.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6494537 6494769 . - . gene_id "RvY_05565"; transcript_id "RvY_05565.1"; Scaffold002 rebuild exon 6494850 6495079 . - . gene_id "RvY_05565"; transcript_id "RvY_05565.1"; Scaffold002 rebuild exon 6495203 6495402 . - . gene_id "RvY_05565"; transcript_id "RvY_05565.1"; Scaffold002 rebuild transcript 6496489 6511622 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; gene_name "FLNA"; annotation "Filamin-C"; Pfam "[Filamin] Filamin/ABP280 repeat|[Y_Y_Y]|[Big_3_4] Bacterial Ig-like domain (group 3)|[Big_1] Bacterial Ig-like domain (group 1)|[CH] Calponin homology (CH) domain|[SH2]"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; KO "K04437"; similar_genes "FLNC_HUMAN(e-value:1.3e-70;bit-score:264.0)"; Scaffold002 rebuild exon 6496489 6496676 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6496856 6497092 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6497162 6497437 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6497501 6497611 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6497696 6497944 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6498121 6498156 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6498216 6498356 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6498435 6498662 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6498772 6498900 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6499072 6499099 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6499203 6499327 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6499409 6499612 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6500072 6500344 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6500413 6500721 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6500800 6500841 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6500925 6501039 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6502272 6502362 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6502442 6503045 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6503108 6503335 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6503417 6503482 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6503550 6503792 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6503861 6503896 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6503965 6504102 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6506226 6506571 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6506670 6507121 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6507339 6507734 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6507791 6507932 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6508014 6508313 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6508387 6508748 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6508831 6509076 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6510977 6511122 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6511212 6511342 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild exon 6511410 6511622 . - . gene_id "RvY_05566"; transcript_id "RvY_05566.1"; Scaffold002 rebuild transcript 6514217 6515814 . - . gene_id "RvY_05567"; transcript_id "RvY_05567.1"; gene_name "MANEC"; annotation "hypothetical protein."; Pfam "[MANEC]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase."; Scaffold002 rebuild exon 6514217 6514625 . - . gene_id "RvY_05567"; transcript_id "RvY_05567.1"; Scaffold002 rebuild exon 6514727 6514898 . - . gene_id "RvY_05567"; transcript_id "RvY_05567.1"; Scaffold002 rebuild exon 6514994 6515023 . - . gene_id "RvY_05567"; transcript_id "RvY_05567.1"; Scaffold002 rebuild exon 6515098 6515407 . - . gene_id "RvY_05567"; transcript_id "RvY_05567.1"; Scaffold002 rebuild exon 6515476 6515814 . - . gene_id "RvY_05567"; transcript_id "RvY_05567.1"; Scaffold002 rebuild transcript 6516659 6521203 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; gene_name "IARS"; annotation "Isoleucyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[Anticodon_1] Anticodon-binding domain of tRNA|[tRNA-synt_1e] tRNA synthetases class I (C) catalytic domain|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)"; CDD "isoleucyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.5"; KO "K01870"; similar_genes "SYIC_MOUSE(e-value:1.5e-130;bit-score:463.0)"; Scaffold002 rebuild exon 6516659 6516777 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6516958 6517234 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6517296 6517515 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6517584 6517712 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6517845 6518805 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6518866 6518952 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6519018 6519101 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6519223 6519367 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6519457 6519577 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6519676 6519845 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6519924 6520045 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6520145 6520247 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6520320 6520538 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6520601 6520762 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild exon 6520838 6521203 . + . gene_id "RvY_05568"; transcript_id "RvY_05568.1"; Scaffold002 rebuild transcript 6522048 6523871 . + . gene_id "RvY_05569"; transcript_id "RvY_05569.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain"; Scaffold002 rebuild exon 6522048 6522117 . + . gene_id "RvY_05569"; transcript_id "RvY_05569.1"; Scaffold002 rebuild exon 6522209 6522517 . + . gene_id "RvY_05569"; transcript_id "RvY_05569.1"; Scaffold002 rebuild exon 6522711 6523031 . + . gene_id "RvY_05569"; transcript_id "RvY_05569.1"; Scaffold002 rebuild exon 6523103 6523558 . + . gene_id "RvY_05569"; transcript_id "RvY_05569.1"; Scaffold002 rebuild exon 6523690 6523871 . + . gene_id "RvY_05569"; transcript_id "RvY_05569.1"; Scaffold002 rebuild transcript 6524104 6524469 . + . gene_id "RvY_05570"; transcript_id "RvY_05570.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6524104 6524469 . + . gene_id "RvY_05570"; transcript_id "RvY_05570.1"; Scaffold002 rebuild transcript 6530015 6536346 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; gene_name "ATP2B"; annotation "Plasma membrane calcium-transporting ATPase 1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1)[ATP_Ca_trans_C] Plasma membrane calcium transporter ATPase C terminal|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; KO "K05850"; similar_genes "AT2B1_HUMAN(e-value:3.1e-133;bit-score:472.0)"; Scaffold002 rebuild exon 6530015 6530189 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6530476 6530667 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6530829 6531074 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6531144 6531269 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6531332 6531466 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6531551 6531754 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6531842 6532068 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6532139 6532274 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6532650 6533001 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6533258 6533906 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6533968 6534159 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6534384 6534597 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6534673 6534887 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6535127 6535405 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild exon 6536005 6536346 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.1"; Scaffold002 rebuild transcript 6530015 6537627 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; gene_name "ATP2B"; annotation "Plasma membrane calcium-transporting ATPase 1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1)[ATP_Ca_trans_C] Plasma membrane calcium transporter ATPase C terminal|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; KO "K05850"; similar_genes "AT2B1_HUMAN(e-value:3.1e-133;bit-score:472.0)"; Scaffold002 rebuild exon 6530015 6530189 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6530476 6530667 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6530829 6531074 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6531144 6531269 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6531332 6531466 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6531551 6531754 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6531842 6532068 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6532139 6532274 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6532650 6533001 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6533258 6533906 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6533968 6534159 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6534384 6534597 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6534673 6534887 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6535127 6535405 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild exon 6537460 6537627 . + . gene_id "RvY_05571"; transcript_id "RvY_05571.2"; Scaffold002 rebuild transcript 6538287 6538619 . + . gene_id "RvY_05572"; transcript_id "RvY_05572.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6538287 6538619 . + . gene_id "RvY_05572"; transcript_id "RvY_05572.1"; Scaffold002 rebuild transcript 6538604 6538933 . + . gene_id "RvY_05572"; transcript_id "RvY_05572.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6538604 6538933 . + . gene_id "RvY_05572"; transcript_id "RvY_05572.2"; Scaffold002 rebuild transcript 6539360 6540528 . - . gene_id "RvY_05573"; transcript_id "RvY_05573.1"; gene_name "RAB"; annotation "Ras-related protein Rab-10"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; CDD "Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07976"; similar_genes "RAB10_DISOM(e-value:1.4e-82;bit-score:303.0)"; Scaffold002 rebuild exon 6539360 6539419 . - . gene_id "RvY_05573"; transcript_id "RvY_05573.1"; Scaffold002 rebuild exon 6539508 6539717 . - . gene_id "RvY_05573"; transcript_id "RvY_05573.1"; Scaffold002 rebuild exon 6539842 6539980 . - . gene_id "RvY_05573"; transcript_id "RvY_05573.1"; Scaffold002 rebuild exon 6540244 6540304 . - . gene_id "RvY_05573"; transcript_id "RvY_05573.1"; Scaffold002 rebuild exon 6540402 6540528 . - . gene_id "RvY_05573"; transcript_id "RvY_05573.1"; Scaffold002 rebuild transcript 6540144 6540203 . + . gene_id "RvY_05574"; transcript_id "RvY_05574.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6540144 6540203 . + . gene_id "RvY_05574"; transcript_id "RvY_05574.1"; Scaffold002 rebuild transcript 6540735 6541121 . - . gene_id "RvY_05575"; transcript_id "RvY_05575.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6540735 6541121 . - . gene_id "RvY_05575"; transcript_id "RvY_05575.1"; Scaffold002 rebuild transcript 6540606 6541121 . - . gene_id "RvY_05575"; transcript_id "RvY_05575.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6540606 6540613 . - . gene_id "RvY_05575"; transcript_id "RvY_05575.2"; Scaffold002 rebuild exon 6540761 6541121 . - . gene_id "RvY_05575"; transcript_id "RvY_05575.2"; Scaffold002 rebuild transcript 6541312 6542662 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6541312 6541415 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; Scaffold002 rebuild exon 6541524 6541659 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; Scaffold002 rebuild exon 6541763 6541867 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; Scaffold002 rebuild exon 6541977 6542152 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; Scaffold002 rebuild exon 6542244 6542307 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; Scaffold002 rebuild exon 6542432 6542662 . + . gene_id "RvY_05576"; transcript_id "RvY_05576.1"; Scaffold002 rebuild transcript 6546338 6546541 . - . gene_id "RvY_05577"; transcript_id "RvY_05577.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6546338 6546541 . - . gene_id "RvY_05577"; transcript_id "RvY_05577.1"; Scaffold002 rebuild transcript 6549205 6553016 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; gene_name "GRM2"; annotation "Metabotropic glutamate receptor"; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[NCD3G] Nine Cysteines Domain of family 3 GPCR|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III."; KO "K04605"; similar_genes "GRM_DROME(e-value:4.8e-51;bit-score:199.0)"; Scaffold002 rebuild exon 6549205 6549514 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6549759 6550626 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6550905 6551194 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6551297 6552119 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6552248 6552400 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6552460 6552547 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6552648 6552837 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild exon 6552904 6553016 . + . gene_id "RvY_05578"; transcript_id "RvY_05578.1"; Scaffold002 rebuild transcript 6553607 6554251 . + . gene_id "RvY_05579"; transcript_id "RvY_05579.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6553607 6554251 . + . gene_id "RvY_05579"; transcript_id "RvY_05579.1"; Scaffold002 rebuild transcript 6555722 6561692 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; gene_name "3a01204"; annotation "hypothetical protein."; Pfam "[ABC2_membrane] ABC-2 type transporter|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; Scaffold002 rebuild exon 6555722 6555917 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6556007 6556416 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6556490 6556566 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6556633 6557019 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6557230 6557346 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6557470 6557622 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6557731 6557848 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6558073 6558222 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6559148 6559343 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6559515 6559744 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6559856 6560010 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6560616 6561310 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild exon 6561601 6561692 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.1"; Scaffold002 rebuild transcript 6556003 6561692 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; gene_name "3a01204"; annotation "hypothetical protein."; Pfam "[ABC2_membrane] ABC-2 type transporter|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; Scaffold002 rebuild exon 6556003 6556416 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6556490 6556566 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6556633 6557019 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6557230 6557346 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6557470 6557622 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6557731 6557848 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6558073 6558222 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6559148 6559343 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6559515 6559744 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6559856 6560010 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6560616 6561310 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild exon 6561601 6561692 . - . gene_id "RvY_05580"; transcript_id "RvY_05580.2"; Scaffold002 rebuild transcript 6563600 6565072 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; gene_name "COG4221"; annotation "hypothetical protein."; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]|[NAD_binding_10] NADH(P)-binding"; CDD "Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]"; Scaffold002 rebuild exon 6563600 6563737 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; Scaffold002 rebuild exon 6563800 6563845 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; Scaffold002 rebuild exon 6563963 6564123 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; Scaffold002 rebuild exon 6564488 6564582 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; Scaffold002 rebuild exon 6564654 6564783 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; Scaffold002 rebuild exon 6564845 6565072 . + . gene_id "RvY_05581"; transcript_id "RvY_05581.1"; Scaffold002 rebuild transcript 6565196 6567485 . - . gene_id "RvY_05582"; transcript_id "RvY_05582.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6565196 6565479 . - . gene_id "RvY_05582"; transcript_id "RvY_05582.1"; Scaffold002 rebuild exon 6565571 6566797 . - . gene_id "RvY_05582"; transcript_id "RvY_05582.1"; Scaffold002 rebuild exon 6567398 6567485 . - . gene_id "RvY_05582"; transcript_id "RvY_05582.1"; Scaffold002 rebuild transcript 6571383 6572926 . - . gene_id "RvY_05583"; transcript_id "RvY_05583.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14553"; Scaffold002 rebuild exon 6571383 6572102 . - . gene_id "RvY_05583"; transcript_id "RvY_05583.1"; Scaffold002 rebuild exon 6572159 6572796 . - . gene_id "RvY_05583"; transcript_id "RvY_05583.1"; Scaffold002 rebuild exon 6572863 6572926 . - . gene_id "RvY_05583"; transcript_id "RvY_05583.1"; Scaffold002 rebuild transcript 6573540 6575054 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; gene_name "ATPeF1G"; annotation "ATP synthase subunit gamma, mitochondrial"; Pfam "[ATP-synt] ATP synthase"; CDD "ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP."; EC "EC3.6.3.14"; KO "K02136"; similar_genes "ATPG_BOVIN(e-value:7.8e-62;bit-score:234.0)"; Scaffold002 rebuild exon 6573540 6573577 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild exon 6573641 6573693 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild exon 6573795 6573926 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild exon 6574031 6574235 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild exon 6574306 6574449 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild exon 6574651 6574871 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild exon 6574954 6575054 . + . gene_id "RvY_05584"; transcript_id "RvY_05584.1"; Scaffold002 rebuild transcript 6576672 6579595 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "NHR2_CAEEL(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6576672 6576887 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild exon 6577694 6577835 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild exon 6577912 6578016 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild exon 6578200 6578624 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild exon 6578696 6578965 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild exon 6579038 6579248 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild exon 6579315 6579595 . + . gene_id "RvY_05585"; transcript_id "RvY_05585.1"; Scaffold002 rebuild transcript 6580536 6581756 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6580536 6580791 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; Scaffold002 rebuild exon 6580855 6580926 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; Scaffold002 rebuild exon 6580999 6581142 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; Scaffold002 rebuild exon 6581219 6581335 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; Scaffold002 rebuild exon 6581413 6581505 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; Scaffold002 rebuild exon 6581596 6581756 . + . gene_id "RvY_05586"; transcript_id "RvY_05586.1"; Scaffold002 rebuild transcript 6582450 6584414 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; gene_name "ACTB_G1"; annotation "Actin, clone 403"; Pfam "[Actin]"; CDD "actin; Provisional"; KO "K05692"; similar_genes "ACT4_ARTSX(e-value:6.8e-218;bit-score:753.0)"; Scaffold002 rebuild exon 6582450 6582722 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; Scaffold002 rebuild exon 6582811 6582863 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; Scaffold002 rebuild exon 6583145 6583336 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; Scaffold002 rebuild exon 6583410 6583656 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; Scaffold002 rebuild exon 6583938 6584177 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; Scaffold002 rebuild exon 6584292 6584414 . - . gene_id "RvY_05587"; transcript_id "RvY_05587.1"; Scaffold002 rebuild transcript 6586897 6587091 . - . gene_id "RvY_05588"; transcript_id "RvY_05588.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6586897 6587091 . - . gene_id "RvY_05588"; transcript_id "RvY_05588.1"; Scaffold002 rebuild transcript 6587743 6588862 . - . gene_id "RvY_05589"; transcript_id "RvY_05589.1"; gene_name "COG4886"; annotation "putative Leucine-rich repeat-containing protein 57"; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "LRC57_XENLA(e-value:8.0e-30;bit-score:128.0)"; Scaffold002 rebuild exon 6587743 6587781 . - . gene_id "RvY_05589"; transcript_id "RvY_05589.1"; Scaffold002 rebuild exon 6587853 6588038 . - . gene_id "RvY_05589"; transcript_id "RvY_05589.1"; Scaffold002 rebuild exon 6588123 6588388 . - . gene_id "RvY_05589"; transcript_id "RvY_05589.1"; Scaffold002 rebuild exon 6588516 6588651 . - . gene_id "RvY_05589"; transcript_id "RvY_05589.1"; Scaffold002 rebuild exon 6588776 6588862 . - . gene_id "RvY_05589"; transcript_id "RvY_05589.1"; Scaffold002 rebuild transcript 6589615 6591894 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; gene_name "MAPKAPK3"; annotation "MAP kinase-activated protein kinase 3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K04444"; similar_genes "MAPK3_BOVIN(e-value:7.5e-126;bit-score:447.0)"; Scaffold002 rebuild exon 6589615 6589824 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6589906 6590116 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6590213 6590415 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6590545 6590624 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6590746 6590810 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6590883 6591022 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6591441 6591585 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild exon 6591716 6591894 . - . gene_id "RvY_05590"; transcript_id "RvY_05590.1"; Scaffold002 rebuild transcript 6593062 6593766 . + . gene_id "RvY_05591"; transcript_id "RvY_05591.1"; gene_name "ATPeF1D"; annotation "F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]"; Pfam "[ATP-synt_DE_N] ATP synthase, Delta/Epsilon chain, beta-sandwich domain"; EC "EC3.6.3.14"; KO "K02134"; similar_genes "ATPD_MOUSE(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 6593062 6593190 . + . gene_id "RvY_05591"; transcript_id "RvY_05591.1"; Scaffold002 rebuild exon 6593260 6593413 . + . gene_id "RvY_05591"; transcript_id "RvY_05591.1"; Scaffold002 rebuild exon 6593489 6593577 . + . gene_id "RvY_05591"; transcript_id "RvY_05591.1"; Scaffold002 rebuild exon 6593644 6593766 . + . gene_id "RvY_05591"; transcript_id "RvY_05591.1"; Scaffold002 rebuild transcript 6594294 6595732 . - . gene_id "RvY_05592"; transcript_id "RvY_05592.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6594294 6595319 . - . gene_id "RvY_05592"; transcript_id "RvY_05592.1"; Scaffold002 rebuild exon 6595388 6595732 . - . gene_id "RvY_05592"; transcript_id "RvY_05592.1"; Scaffold002 rebuild transcript 6596860 6601427 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6596860 6596868 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6596946 6596975 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6597055 6597157 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6597231 6597326 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6597434 6598123 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6598279 6598462 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6598527 6598674 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6598827 6599430 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6599639 6600223 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6600506 6600884 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild exon 6601139 6601427 . + . gene_id "RvY_05593"; transcript_id "RvY_05593.1"; Scaffold002 rebuild transcript 6601917 6603586 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; gene_name "CTSZ"; annotation "Cathepsin Z"; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the Scaffold002 rebuild exon 6601917 6602035 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6602126 6602244 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6602323 6602364 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6602440 6602541 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6602603 6602683 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6602768 6602847 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6602920 6602958 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6603034 6603065 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6603137 6603215 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6603314 6603406 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild exon 6603470 6603586 . + . gene_id "RvY_05594"; transcript_id "RvY_05594.1"; Scaffold002 rebuild transcript 6603711 6606068 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold002 rebuild exon 6603711 6603930 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6604001 6604057 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6604135 6604439 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6604542 6604649 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6604790 6604871 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6605000 6605042 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6605156 6605441 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6605565 6605699 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild exon 6605823 6606068 . - . gene_id "RvY_05595"; transcript_id "RvY_05595.1"; Scaffold002 rebuild transcript 6607046 6610689 . - . gene_id "RvY_05596"; transcript_id "RvY_05596.1"; gene_name "RNA14"; annotation "hypothetical protein."; Pfam "[Suf] Suppressor of forked protein (Suf)"; CDD "Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]"; KO "K14408"; Scaffold002 rebuild exon 6607046 6607681 . - . gene_id "RvY_05596"; transcript_id "RvY_05596.1"; Scaffold002 rebuild exon 6608025 6608606 . - . gene_id "RvY_05596"; transcript_id "RvY_05596.1"; Scaffold002 rebuild exon 6608674 6608850 . - . gene_id "RvY_05596"; transcript_id "RvY_05596.1"; Scaffold002 rebuild exon 6609958 6610689 . - . gene_id "RvY_05596"; transcript_id "RvY_05596.1"; Scaffold002 rebuild transcript 6611611 6621144 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; annotation "hypothetical protein."; Pfam "[DUF1981]|[Sec7_N] Guanine nucleotide exchange factor in Golgi transport N-terminal"; similar_genes "MON2_DROME(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 6611611 6611718 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6611792 6611855 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6611928 6612055 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6612115 6612246 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6612325 6612457 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6612538 6612635 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6612691 6612813 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6612880 6613211 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6613283 6613513 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6613607 6614016 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6614079 6614191 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6614295 6614855 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6615086 6615664 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6615757 6615955 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6616014 6616287 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6616361 6616592 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6616695 6616955 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6620063 6620293 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6620482 6620608 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6620677 6620928 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild exon 6620984 6621144 . + . gene_id "RvY_05597"; transcript_id "RvY_05597.1"; Scaffold002 rebuild transcript 6617082 6617864 . - . gene_id "RvY_05598"; transcript_id "RvY_05598.1"; annotation "hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; Scaffold002 rebuild exon 6617082 6617456 . - . gene_id "RvY_05598"; transcript_id "RvY_05598.1"; Scaffold002 rebuild exon 6617619 6617864 . - . gene_id "RvY_05598"; transcript_id "RvY_05598.1"; Scaffold002 rebuild transcript 6623781 6626468 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6623781 6624000 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; Scaffold002 rebuild exon 6624065 6624236 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; Scaffold002 rebuild exon 6624348 6624475 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; Scaffold002 rebuild exon 6624587 6625446 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; Scaffold002 rebuild exon 6625648 6626078 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; Scaffold002 rebuild exon 6626219 6626468 . - . gene_id "RvY_05599"; transcript_id "RvY_05599.1"; Scaffold002 rebuild transcript 6627486 6629319 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; gene_name "(1,2)ADIPOR"; annotation "(1)adiponectin receptor(2,3)putative ADIPOR-like receptor C43G2.1"; Pfam "[HlyIII] Haemolysin-III related"; KO "(1,2)K07297"; similar_genes "(1)ADRL_CAEEL(e-value:8.8e-25;bit-score:111.0)(2,3)ADRL_CAEEL(e-value:2.9e-38;bit-score:156.0)"; Scaffold002 rebuild exon 6627486 6627644 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild exon 6627744 6627800 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild exon 6627913 6627992 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild exon 6628067 6628123 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild exon 6628203 6628649 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild exon 6628727 6628967 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild exon 6629041 6629319 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.1"; Scaffold002 rebuild transcript 6627486 6629319 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; gene_name "(1,2)ADIPOR"; annotation "(1)adiponectin receptor(2,3)putative ADIPOR-like receptor C43G2.1"; Pfam "[HlyIII] Haemolysin-III related"; KO "(1,2)K07297"; similar_genes "(1)ADRL_CAEEL(e-value:8.8e-25;bit-score:111.0)(2,3)ADRL_CAEEL(e-value:2.9e-38;bit-score:156.0)"; Scaffold002 rebuild exon 6627486 6627644 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6627744 6627800 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6627913 6627992 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6628067 6628123 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6628203 6628390 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6628469 6628649 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6628727 6628967 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild exon 6629041 6629319 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.2"; Scaffold002 rebuild transcript 6627678 6629319 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; gene_name "(1,2)ADIPOR"; annotation "(1)adiponectin receptor(2,3)putative ADIPOR-like receptor C43G2.1"; Pfam "[HlyIII] Haemolysin-III related"; KO "(1,2)K07297"; similar_genes "(1)ADRL_CAEEL(e-value:8.8e-25;bit-score:111.0)(2,3)ADRL_CAEEL(e-value:2.9e-38;bit-score:156.0)"; Scaffold002 rebuild exon 6627678 6627800 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild exon 6627913 6627992 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild exon 6628067 6628123 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild exon 6628203 6628390 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild exon 6628469 6628649 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild exon 6628727 6628967 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild exon 6629041 6629319 . - . gene_id "RvY_05600"; transcript_id "RvY_05600.3"; Scaffold002 rebuild transcript 6630138 6630946 . + . gene_id "RvY_05601"; transcript_id "RvY_05601.1"; annotation "hypothetical protein."; Pfam "[N6-adenineMlase] Probable N6-adenine methyltransferase"; Scaffold002 rebuild exon 6630138 6630263 . + . gene_id "RvY_05601"; transcript_id "RvY_05601.1"; Scaffold002 rebuild exon 6630336 6630418 . + . gene_id "RvY_05601"; transcript_id "RvY_05601.1"; Scaffold002 rebuild exon 6630490 6630946 . + . gene_id "RvY_05601"; transcript_id "RvY_05601.1"; Scaffold002 rebuild transcript 6631059 6633291 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; gene_name "SMAD4"; annotation "Mothers against decapentaplegic homolog 4"; Pfam "[MH2]|[MH1]"; KO "K04501"; similar_genes "SMAD4_RAT(e-value:2.3e-61;bit-score:233.0)"; Scaffold002 rebuild exon 6631059 6631475 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild exon 6631547 6631638 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild exon 6631758 6631838 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild exon 6631935 6632001 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild exon 6632060 6632447 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild exon 6632593 6632906 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild exon 6633031 6633291 . - . gene_id "RvY_05602"; transcript_id "RvY_05602.1"; Scaffold002 rebuild transcript 6634934 6635310 . - . gene_id "RvY_05603"; transcript_id "RvY_05603.1"; annotation "hypothetical protein."; Pfam "[Hydrolase_4] Putative lysophospholipase"; Scaffold002 rebuild exon 6634934 6635099 . - . gene_id "RvY_05603"; transcript_id "RvY_05603.1"; Scaffold002 rebuild exon 6635213 6635310 . - . gene_id "RvY_05603"; transcript_id "RvY_05603.1"; Scaffold002 rebuild transcript 6637120 6638403 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; gene_name "K01054"; annotation "acylglycerol lipase [EC:3.1.1.23]"; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Esterase] Putative esterase|[Abhydrolase_6] Alpha/beta hydrolase family|[Peptidase_S9] Prolyl oligopeptidase family|[Abhydrolase_1] alpha/beta hydrolase fold|[Hydrolase_4] Putative lysophospholipase"; CDD "Lysophospholipase [Lipid metabolism]"; EC "EC3.1.1.23"; KO "K01054"; similar_genes "MGLL_RAT(e-value:4.5e-09;bit-score:59.0)"; Scaffold002 rebuild exon 6637120 6637218 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; Scaffold002 rebuild exon 6637297 6637509 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; Scaffold002 rebuild exon 6637572 6637772 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; Scaffold002 rebuild exon 6637853 6637989 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; Scaffold002 rebuild exon 6638070 6638176 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; Scaffold002 rebuild exon 6638300 6638403 . - . gene_id "RvY_05604"; transcript_id "RvY_05604.1"; Scaffold002 rebuild transcript 6639408 6639979 . - . gene_id "RvY_05605"; transcript_id "RvY_05605.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6639408 6639531 . - . gene_id "RvY_05605"; transcript_id "RvY_05605.1"; Scaffold002 rebuild exon 6639810 6639979 . - . gene_id "RvY_05605"; transcript_id "RvY_05605.1"; Scaffold002 rebuild transcript 6640204 6641121 . + . gene_id "RvY_05606"; transcript_id "RvY_05606.1"; gene_name "RHOA"; annotation "Ras-like GTP-binding protein RHO"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; KO "K04513"; similar_genes "RHO_APLCA(e-value:3.0e-97;bit-score:352.0)"; Scaffold002 rebuild exon 6640204 6640359 . + . gene_id "RvY_05606"; transcript_id "RvY_05606.1"; Scaffold002 rebuild exon 6640469 6640618 . + . gene_id "RvY_05606"; transcript_id "RvY_05606.1"; Scaffold002 rebuild exon 6640718 6640819 . + . gene_id "RvY_05606"; transcript_id "RvY_05606.1"; Scaffold002 rebuild exon 6640951 6641121 . + . gene_id "RvY_05606"; transcript_id "RvY_05606.1"; Scaffold002 rebuild transcript 6641645 6642609 . - . gene_id "RvY_05607"; transcript_id "RvY_05607.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6641645 6641755 . - . gene_id "RvY_05607"; transcript_id "RvY_05607.1"; Scaffold002 rebuild exon 6641868 6642116 . - . gene_id "RvY_05607"; transcript_id "RvY_05607.1"; Scaffold002 rebuild exon 6642205 6642609 . - . gene_id "RvY_05607"; transcript_id "RvY_05607.1"; Scaffold002 rebuild transcript 6642803 6643051 . - . gene_id "RvY_05608"; transcript_id "RvY_05608.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6642803 6643051 . - . gene_id "RvY_05608"; transcript_id "RvY_05608.1"; Scaffold002 rebuild transcript 6644820 6645419 . - . gene_id "RvY_05609"; transcript_id "RvY_05609.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6644820 6645419 . - . gene_id "RvY_05609"; transcript_id "RvY_05609.1"; Scaffold002 rebuild transcript 6645955 6646907 . - . gene_id "RvY_05610"; transcript_id "RvY_05610.1"; gene_name "SRD5A1"; annotation "3-oxo-5-alpha-steroid 4-dehydrogenase 1 [EC:1.3.99.5]"; Pfam "[DUF1295]|[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "3-oxo-5-alpha-steroid 4-dehydrogenase. This family consists of 3-oxo-5-alpha-steroid 4-dehydrogenases, EC:1.3.99.5 Also known as Steroid 5-alpha-reductase, the reaction catalysed by this enzyme is: 3-oxo-5-alpha-steroid + acceptor <"; EC "EC1.3.99.5"; KO "K12343"; similar_genes "S5A1_BOVIN(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 6645955 6646050 . - . gene_id "RvY_05610"; transcript_id "RvY_05610.1"; Scaffold002 rebuild exon 6646115 6646554 . - . gene_id "RvY_05610"; transcript_id "RvY_05610.1"; Scaffold002 rebuild exon 6646619 6646907 . - . gene_id "RvY_05610"; transcript_id "RvY_05610.1"; Scaffold002 rebuild transcript 6648049 6649567 . + . gene_id "RvY_05611"; transcript_id "RvY_05611.1"; gene_name "VPS4"; annotation "Vacuolar protein sorting-associated protein 4B"; Pfam "[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[MIT] MIT (microtubule interacting and transport) domain|[AAA_17] AAA domain|[Vps4_C] Vps4 C terminal oligomerisation domain"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; KO "K12196"; similar_genes "VPS4B_BOVIN(e-value:1.5e-113;bit-score:406.0)"; Scaffold002 rebuild exon 6648049 6648856 . + . gene_id "RvY_05611"; transcript_id "RvY_05611.1"; Scaffold002 rebuild exon 6649059 6649567 . + . gene_id "RvY_05611"; transcript_id "RvY_05611.1"; Scaffold002 rebuild transcript 6650171 6650743 . - . gene_id "RvY_05612"; transcript_id "RvY_05612.1"; gene_name "SEC61B"; annotation "protein transport protein SEC61 subunit beta"; Pfam "[Sec61_beta] Sec61beta family"; KO "K09481"; similar_genes "SC61B_CANFA(e-value:1.4e-14;bit-score:78.0)"; Scaffold002 rebuild exon 6650171 6650258 . - . gene_id "RvY_05612"; transcript_id "RvY_05612.1"; Scaffold002 rebuild exon 6650345 6650452 . - . gene_id "RvY_05612"; transcript_id "RvY_05612.1"; Scaffold002 rebuild exon 6650570 6650664 . - . gene_id "RvY_05612"; transcript_id "RvY_05612.1"; Scaffold002 rebuild exon 6650738 6650743 . - . gene_id "RvY_05612"; transcript_id "RvY_05612.1"; Scaffold002 rebuild transcript 6651570 6653829 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; gene_name "SRD5A2"; annotation "3-oxo-5-alpha-steroid 4-dehydrogenase 2 [EC:1.3.99.5]"; Pfam "[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "3-oxo-5-alpha-steroid 4-dehydrogenase. This family consists of 3-oxo-5-alpha-steroid 4-dehydrogenases, EC:1.3.99.5 Also known as Steroid 5-alpha-reductase, the reaction catalysed by this enzyme is: 3-oxo-5-alpha-steroid + acceptor <"; EC "EC1.3.99.5"; KO "K12344"; similar_genes "S5A1_MOUSE(e-value:7.3e-18;bit-score:88.0)"; Scaffold002 rebuild exon 6651570 6651619 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6651732 6651875 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6652019 6652057 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6652171 6652217 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6652296 6652471 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6652605 6652750 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6653033 6653407 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6653476 6653563 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild exon 6653752 6653829 . + . gene_id "RvY_05613"; transcript_id "RvY_05613.1"; Scaffold002 rebuild transcript 6654246 6655676 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.1"; gene_name "(1,2)K00628"; annotation "(1,2)glycine N-acyltransferase [EC:2.3.1.13](3)hypothetical protein."; Pfam "[Gly_acyl_tr_C] Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region|[Gly_acyl_tr_N] Aralkyl acyl-CoA:amino acid N-acyltransferase"; EC "(1,2)EC2.3.1.13"; KO "(1,2)K00628"; Scaffold002 rebuild exon 6654246 6654386 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.1"; Scaffold002 rebuild exon 6654551 6654688 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.1"; Scaffold002 rebuild exon 6654789 6654909 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.1"; Scaffold002 rebuild exon 6654997 6655129 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.1"; Scaffold002 rebuild exon 6655208 6655676 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.1"; Scaffold002 rebuild transcript 6654315 6655676 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.2"; gene_name "(1,2)K00628"; annotation "(1,2)glycine N-acyltransferase [EC:2.3.1.13](3)hypothetical protein."; Pfam "[Gly_acyl_tr_C] Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region|[Gly_acyl_tr_N] Aralkyl acyl-CoA:amino acid N-acyltransferase"; EC "(1,2)EC2.3.1.13"; KO "(1,2)K00628"; Scaffold002 rebuild exon 6654315 6654386 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.2"; Scaffold002 rebuild exon 6654551 6654688 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.2"; Scaffold002 rebuild exon 6654789 6654909 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.2"; Scaffold002 rebuild exon 6654997 6655129 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.2"; Scaffold002 rebuild exon 6655208 6655676 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.2"; Scaffold002 rebuild transcript 6654344 6655676 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.3"; gene_name "(1,2)K00628"; annotation "(1,2)glycine N-acyltransferase [EC:2.3.1.13](3)hypothetical protein."; Pfam "[Gly_acyl_tr_C] Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region|[Gly_acyl_tr_N] Aralkyl acyl-CoA:amino acid N-acyltransferase"; EC "(1,2)EC2.3.1.13"; KO "(1,2)K00628"; Scaffold002 rebuild exon 6654344 6654386 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.3"; Scaffold002 rebuild exon 6654615 6654688 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.3"; Scaffold002 rebuild exon 6654789 6654909 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.3"; Scaffold002 rebuild exon 6654997 6655129 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.3"; Scaffold002 rebuild exon 6655208 6655676 . + . gene_id "RvY_05614"; transcript_id "RvY_05614.3"; Scaffold002 rebuild transcript 6656592 6660707 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; gene_name "FTHFD"; annotation "10-formyltetrahydrofolate dehydrogenase"; Pfam "[Formyl_trans_N] Formyl transferase|[Aldedh] Aldehyde dehydrogenase family|[PP-binding] Phosphopantetheine attachment site|[Formyl_trans_C] Formyl transferase, C-terminal domain"; CDD "10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC"; EC "EC1.5.1.6"; KO "K00289"; similar_genes "FTHFD_XENLA(e-value:1.4e-205;bit-score:712.0)"; Scaffold002 rebuild exon 6656592 6656721 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6656914 6657148 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6657209 6657374 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6657447 6657641 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6657718 6657852 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6657911 6658039 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6658114 6658341 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6658428 6658490 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6658682 6659088 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6659163 6659191 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6659257 6659333 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6659510 6659791 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6659873 6660045 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6660105 6660302 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6660367 6660566 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild exon 6660652 6660707 . + . gene_id "RvY_05615"; transcript_id "RvY_05615.1"; Scaffold002 rebuild transcript 6661068 6664204 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; gene_name "Atx10homo_assoc"; annotation "hypothetical protein."; Pfam "[Atx10homo_assoc] Spinocerebellar ataxia type 10 protein domain"; CDD "Spinocerebellar ataxia type 10 protein domain. This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C-terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region."; Scaffold002 rebuild exon 6661068 6661486 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6661791 6662147 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6662240 6662348 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6662601 6662766 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6662844 6663104 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6663207 6663315 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6663631 6663743 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6663817 6664005 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild exon 6664098 6664204 . - . gene_id "RvY_05616"; transcript_id "RvY_05616.1"; Scaffold002 rebuild transcript 6665427 6665723 . + . gene_id "RvY_05617"; transcript_id "RvY_05617.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6665427 6665723 . + . gene_id "RvY_05617"; transcript_id "RvY_05617.1"; Scaffold002 rebuild transcript 6665807 6666703 . + . gene_id "RvY_05618"; transcript_id "RvY_05618.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6665807 6666038 . + . gene_id "RvY_05618"; transcript_id "RvY_05618.1"; Scaffold002 rebuild exon 6666171 6666365 . + . gene_id "RvY_05618"; transcript_id "RvY_05618.1"; Scaffold002 rebuild exon 6666463 6666557 . + . gene_id "RvY_05618"; transcript_id "RvY_05618.1"; Scaffold002 rebuild exon 6666668 6666703 . + . gene_id "RvY_05618"; transcript_id "RvY_05618.1"; Scaffold002 rebuild transcript 6667360 6668859 . + . gene_id "RvY_05619"; transcript_id "RvY_05619.1"; gene_name "EPT1"; annotation "hypothetical protein."; CDD "sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]"; Scaffold002 rebuild exon 6667360 6667964 . + . gene_id "RvY_05619"; transcript_id "RvY_05619.1"; Scaffold002 rebuild exon 6668068 6668617 . + . gene_id "RvY_05619"; transcript_id "RvY_05619.1"; Scaffold002 rebuild exon 6668761 6668859 . + . gene_id "RvY_05619"; transcript_id "RvY_05619.1"; Scaffold002 rebuild transcript 6669038 6672509 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain|[cEGF] Complement Clr-like EGF-like|[EGF_CA] Calcium-binding EGF domain"; similar_genes "FBLN2_HUMAN(e-value:1.0e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6669038 6669223 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6669293 6669563 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6669625 6669880 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6669947 6670028 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6670128 6670165 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6670238 6670369 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6670465 6670593 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6670658 6670709 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6670769 6671046 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6671137 6671201 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6671257 6671332 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6671393 6671930 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6672012 6672127 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6672187 6672300 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6672370 6672396 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild exon 6672458 6672509 . - . gene_id "RvY_05620"; transcript_id "RvY_05620.1"; Scaffold002 rebuild transcript 6674079 6677664 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; gene_name "(1)MITF(2)TFE"; annotation "(1)microphthalmia-associated transcription factor(2)transcription factor E3-related"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "(1)K09455(2)K09105"; similar_genes "(1)TFE3_MOUSE(e-value:1.7e-25;bit-score:114.0)(2)TFE3_MOUSE(e-value:1.0e-08;bit-score:58.0)"; Scaffold002 rebuild exon 6674079 6674492 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6674821 6674968 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6675052 6675127 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6675221 6675410 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6675496 6675630 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6676464 6676584 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6676860 6677241 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild exon 6677619 6677664 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.1"; Scaffold002 rebuild transcript 6674079 6677664 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; gene_name "(1)MITF(2)TFE"; annotation "(1)microphthalmia-associated transcription factor(2)transcription factor E3-related"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "(1)K09455(2)K09105"; similar_genes "(1)TFE3_MOUSE(e-value:1.7e-25;bit-score:114.0)(2)TFE3_MOUSE(e-value:1.0e-08;bit-score:58.0)"; Scaffold002 rebuild exon 6674079 6674492 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6674821 6674956 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6675052 6675127 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6675221 6675410 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6675496 6675630 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6676464 6676584 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6676860 6677241 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild exon 6677619 6677664 . - . gene_id "RvY_05621"; transcript_id "RvY_05621.2"; Scaffold002 rebuild transcript 6677693 6677926 . - . gene_id "RvY_05622"; transcript_id "RvY_05622.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6677693 6677926 . - . gene_id "RvY_05622"; transcript_id "RvY_05622.1"; Scaffold002 rebuild transcript 6680671 6681042 . + . gene_id "RvY_05623"; transcript_id "RvY_05623.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6680671 6681042 . + . gene_id "RvY_05623"; transcript_id "RvY_05623.1"; Scaffold002 rebuild transcript 6681167 6683011 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6681167 6681208 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.1"; Scaffold002 rebuild exon 6681371 6681465 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.1"; Scaffold002 rebuild exon 6681796 6682113 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.1"; Scaffold002 rebuild exon 6682456 6683011 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.1"; Scaffold002 rebuild transcript 6681167 6683011 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6681167 6681208 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.2"; Scaffold002 rebuild exon 6681374 6681465 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.2"; Scaffold002 rebuild exon 6681796 6682113 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.2"; Scaffold002 rebuild exon 6682456 6683011 . - . gene_id "RvY_05624"; transcript_id "RvY_05624.2"; Scaffold002 rebuild transcript 6683587 6686876 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; annotation "Hippocampus abundant transcript 1 protein"; Pfam "[MFS_1] Major Facilitator Superfamily"; similar_genes "HIAT1_MOUSE(e-value:3.5e-79;bit-score:292.0)"; Scaffold002 rebuild exon 6683587 6683826 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6684118 6684335 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6684469 6684566 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6684652 6684764 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6684838 6684909 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6685158 6685271 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6685339 6685554 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6685900 6686014 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6686171 6686298 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6686367 6686429 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6686509 6686610 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild exon 6686691 6686876 . - . gene_id "RvY_05625"; transcript_id "RvY_05625.1"; Scaffold002 rebuild transcript 6687412 6688606 . + . gene_id "RvY_05626"; transcript_id "RvY_05626.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 6687412 6688042 . + . gene_id "RvY_05626"; transcript_id "RvY_05626.1"; Scaffold002 rebuild exon 6688143 6688606 . + . gene_id "RvY_05626"; transcript_id "RvY_05626.1"; Scaffold002 rebuild transcript 6688662 6688874 . - . gene_id "RvY_05627"; transcript_id "RvY_05627.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6688662 6688874 . - . gene_id "RvY_05627"; transcript_id "RvY_05627.1"; Scaffold002 rebuild transcript 6688962 6689754 . - . gene_id "RvY_05628"; transcript_id "RvY_05628.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6688962 6689047 . - . gene_id "RvY_05628"; transcript_id "RvY_05628.1"; Scaffold002 rebuild exon 6689247 6689556 . - . gene_id "RvY_05628"; transcript_id "RvY_05628.1"; Scaffold002 rebuild exon 6689614 6689754 . - . gene_id "RvY_05628"; transcript_id "RvY_05628.1"; Scaffold002 rebuild transcript 6692847 6697577 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; gene_name "GRIK2"; annotation "Glutamate receptor, ionotropic kainate 3"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05202"; similar_genes "GRIK3_HUMAN(e-value:5.9e-113;bit-score:404.0)"; Scaffold002 rebuild exon 6692847 6692997 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6693448 6693606 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6693810 6694035 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6694106 6694361 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6694483 6694653 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6694728 6694982 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6695157 6695333 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6695392 6695624 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6696008 6696326 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6696550 6696922 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6697068 6697336 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild exon 6697410 6697577 . + . gene_id "RvY_05629"; transcript_id "RvY_05629.1"; Scaffold002 rebuild transcript 6697884 6698986 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6697884 6697895 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; Scaffold002 rebuild exon 6698000 6698154 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; Scaffold002 rebuild exon 6698273 6698358 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; Scaffold002 rebuild exon 6698485 6698589 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; Scaffold002 rebuild exon 6698669 6698875 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; Scaffold002 rebuild exon 6698976 6698986 . - . gene_id "RvY_05630"; transcript_id "RvY_05630.1"; Scaffold002 rebuild transcript 6699695 6700788 . + . gene_id "RvY_05631"; transcript_id "RvY_05631.1"; gene_name "PCNA"; annotation "putative Proliferating cellular nuclear antigen 1"; Pfam "[Rad1] Repair protein Rad1/Rec1/Rad17|[PCNA_N] Proliferating cell nuclear antigen, N-terminal domain|[PCNA_C] Proliferating cell nuclear antigen, C-terminal domain|[Rad9]"; CDD "proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K04802"; similar_genes "PCNA1_ARATH(e-value:1.4e-48;bit-score:190.0)"; Scaffold002 rebuild exon 6699695 6700036 . + . gene_id "RvY_05631"; transcript_id "RvY_05631.1"; Scaffold002 rebuild exon 6700105 6700167 . + . gene_id "RvY_05631"; transcript_id "RvY_05631.1"; Scaffold002 rebuild exon 6700231 6700375 . + . gene_id "RvY_05631"; transcript_id "RvY_05631.1"; Scaffold002 rebuild exon 6700535 6700788 . + . gene_id "RvY_05631"; transcript_id "RvY_05631.1"; Scaffold002 rebuild transcript 6701268 6703113 . - . gene_id "RvY_05632"; transcript_id "RvY_05632.1"; gene_name "CAV1"; annotation "caveolin 1"; Pfam "[Caveolin]"; KO "K06278"; Scaffold002 rebuild exon 6701268 6701438 . - . gene_id "RvY_05632"; transcript_id "RvY_05632.1"; Scaffold002 rebuild exon 6701545 6701636 . - . gene_id "RvY_05632"; transcript_id "RvY_05632.1"; Scaffold002 rebuild exon 6701755 6701812 . - . gene_id "RvY_05632"; transcript_id "RvY_05632.1"; Scaffold002 rebuild exon 6701886 6701978 . - . gene_id "RvY_05632"; transcript_id "RvY_05632.1"; Scaffold002 rebuild exon 6702808 6703113 . - . gene_id "RvY_05632"; transcript_id "RvY_05632.1"; Scaffold002 rebuild transcript 6703781 6705437 . + . gene_id "RvY_05633"; transcript_id "RvY_05633.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6703781 6704009 . + . gene_id "RvY_05633"; transcript_id "RvY_05633.1"; Scaffold002 rebuild exon 6704955 6705227 . + . gene_id "RvY_05633"; transcript_id "RvY_05633.1"; Scaffold002 rebuild exon 6705409 6705437 . + . gene_id "RvY_05633"; transcript_id "RvY_05633.1"; Scaffold002 rebuild transcript 6707223 6712898 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; gene_name "(1)K01768(2)CYCc"; annotation "(1)Atrial natriuretic peptide receptor 2(2)Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1)EC4.6.1.1|EC4.6.1.2(2)EC4.6.1.2"; KO "(1)K01768"; similar_genes "(1)ANPRB_ANGJA(e-value:1.2e-96;bit-score:350.0)(2)ANPRA_MOUSE(e-value:5.8e-75;bit-score:278.0)"; Scaffold002 rebuild exon 6707223 6707559 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6707631 6707672 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6707755 6707779 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6707850 6708015 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6708084 6708222 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6708649 6708692 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6708776 6708814 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6708889 6708975 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6709090 6709227 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6709317 6709367 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6709601 6709774 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6709849 6710005 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6710086 6710170 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6710238 6710349 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6710423 6710578 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6710643 6710819 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6710912 6711239 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6711326 6711504 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6711566 6711702 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6711773 6711924 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6711993 6712060 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6712131 6712296 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6712386 6712416 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6712473 6712614 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild exon 6712683 6712898 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.1"; Scaffold002 rebuild transcript 6707935 6712420 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; gene_name "(1)K01768(2)CYCc"; annotation "(1)Atrial natriuretic peptide receptor 2(2)Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1)EC4.6.1.1|EC4.6.1.2(2)EC4.6.1.2"; KO "(1)K01768"; similar_genes "(1)ANPRB_ANGJA(e-value:1.2e-96;bit-score:350.0)(2)ANPRA_MOUSE(e-value:5.8e-75;bit-score:278.0)"; Scaffold002 rebuild exon 6707935 6708015 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6708084 6708222 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6708649 6708692 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6708776 6708814 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6708889 6708975 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6709090 6709227 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6709317 6709367 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6709601 6709774 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6709849 6710005 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6710086 6710170 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6710238 6710349 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6710423 6710578 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6710643 6710819 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6710912 6711239 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6711326 6711504 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6711566 6711702 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6711773 6711924 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6711993 6712060 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6712131 6712296 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild exon 6712386 6712420 . + . gene_id "RvY_05634"; transcript_id "RvY_05634.2"; Scaffold002 rebuild transcript 6713425 6714629 . - . gene_id "RvY_05635"; transcript_id "RvY_05635.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6713425 6713900 . - . gene_id "RvY_05635"; transcript_id "RvY_05635.1"; Scaffold002 rebuild exon 6714188 6714629 . - . gene_id "RvY_05635"; transcript_id "RvY_05635.1"; Scaffold002 rebuild transcript 6714995 6715477 . - . gene_id "RvY_05636"; transcript_id "RvY_05636.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6714995 6715477 . - . gene_id "RvY_05636"; transcript_id "RvY_05636.1"; Scaffold002 rebuild transcript 6716347 6718058 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; gene_name "EI24"; annotation "etoposide-induced 2.4 mRNA"; Pfam "[EI24] Etoposide-induced protein 2.4 (EI24)"; KO "K10134"; similar_genes "EI24_HUMAN(e-value:8.5e-21;bit-score:98.0)"; Scaffold002 rebuild exon 6716347 6716552 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6716646 6716706 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6716823 6716889 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6717006 6717133 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6717221 6717343 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6717407 6717518 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6717595 6717706 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6717782 6717856 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild exon 6717938 6718058 . + . gene_id "RvY_05637"; transcript_id "RvY_05637.1"; Scaffold002 rebuild transcript 6717002 6717466 . - . gene_id "RvY_05638"; transcript_id "RvY_05638.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6717002 6717148 . - . gene_id "RvY_05638"; transcript_id "RvY_05638.1"; Scaffold002 rebuild exon 6717401 6717466 . - . gene_id "RvY_05638"; transcript_id "RvY_05638.1"; Scaffold002 rebuild transcript 6718291 6719447 . - . gene_id "RvY_05639"; transcript_id "RvY_05639.1"; gene_name "PcbC"; annotation "hypothetical protein."; Pfam "[DIOX_N] non-haem dioxygenase in morphine synthesis N-terminal|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Isopenicillin N synthase and related dioxygenases [General function prediction only]"; Scaffold002 rebuild exon 6718291 6718464 . - . gene_id "RvY_05639"; transcript_id "RvY_05639.1"; Scaffold002 rebuild exon 6718529 6718942 . - . gene_id "RvY_05639"; transcript_id "RvY_05639.1"; Scaffold002 rebuild exon 6719023 6719223 . - . gene_id "RvY_05639"; transcript_id "RvY_05639.1"; Scaffold002 rebuild exon 6719307 6719447 . - . gene_id "RvY_05639"; transcript_id "RvY_05639.1"; Scaffold002 rebuild transcript 6720327 6721239 . - . gene_id "RvY_05640"; transcript_id "RvY_05640.1"; annotation "hypothetical protein."; Pfam "[Hemerythrin] Hemerythrin HHE cation binding domain"; similar_genes "YI06_SCHPO(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 6720327 6720418 . - . gene_id "RvY_05640"; transcript_id "RvY_05640.1"; Scaffold002 rebuild exon 6720509 6720845 . - . gene_id "RvY_05640"; transcript_id "RvY_05640.1"; Scaffold002 rebuild exon 6721078 6721239 . - . gene_id "RvY_05640"; transcript_id "RvY_05640.1"; Scaffold002 rebuild transcript 6721865 6723392 . + . gene_id "RvY_05641"; transcript_id "RvY_05641.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold002 rebuild exon 6721865 6722011 . + . gene_id "RvY_05641"; transcript_id "RvY_05641.1"; Scaffold002 rebuild exon 6722084 6722270 . + . gene_id "RvY_05641"; transcript_id "RvY_05641.1"; Scaffold002 rebuild exon 6722421 6723010 . + . gene_id "RvY_05641"; transcript_id "RvY_05641.1"; Scaffold002 rebuild exon 6723174 6723392 . + . gene_id "RvY_05641"; transcript_id "RvY_05641.1"; Scaffold002 rebuild transcript 6723963 6725701 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6723963 6724090 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; Scaffold002 rebuild exon 6724380 6724509 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; Scaffold002 rebuild exon 6724579 6724695 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; Scaffold002 rebuild exon 6724973 6725098 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; Scaffold002 rebuild exon 6725162 6725419 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; Scaffold002 rebuild exon 6725480 6725701 . + . gene_id "RvY_05642"; transcript_id "RvY_05642.1"; Scaffold002 rebuild transcript 6725963 6728742 . - . gene_id "RvY_05643"; transcript_id "RvY_05643.1"; gene_name "APAF1"; annotation "apoptotic protease-activating factor"; Pfam "[NB-ARC]"; KO "K02084"; Scaffold002 rebuild exon 6725963 6726376 . - . gene_id "RvY_05643"; transcript_id "RvY_05643.1"; Scaffold002 rebuild exon 6726633 6727162 . - . gene_id "RvY_05643"; transcript_id "RvY_05643.1"; Scaffold002 rebuild exon 6727233 6727647 . - . gene_id "RvY_05643"; transcript_id "RvY_05643.1"; Scaffold002 rebuild exon 6727852 6728184 . - . gene_id "RvY_05643"; transcript_id "RvY_05643.1"; Scaffold002 rebuild exon 6728248 6728742 . - . gene_id "RvY_05643"; transcript_id "RvY_05643.1"; Scaffold002 rebuild transcript 6730402 6730853 . + . gene_id "RvY_05644"; transcript_id "RvY_05644.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6730402 6730455 . + . gene_id "RvY_05644"; transcript_id "RvY_05644.1"; Scaffold002 rebuild exon 6730608 6730853 . + . gene_id "RvY_05644"; transcript_id "RvY_05644.1"; Scaffold002 rebuild transcript 6731722 6735023 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; gene_name "cNMP"; annotation "hypothetical protein."; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; similar_genes "CNGA1_BOVIN(e-value:7.2e-16;bit-score:82.0)"; Scaffold002 rebuild exon 6731722 6731941 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6732778 6732959 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6733032 6733133 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6733207 6733372 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6733458 6733594 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6733798 6733983 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6734139 6734180 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6734378 6734523 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild exon 6734594 6735023 . + . gene_id "RvY_05645"; transcript_id "RvY_05645.1"; Scaffold002 rebuild transcript 6739551 6741708 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; gene_name "PRKAR"; annotation "cAMP-dependent protein kinase type I regulatory subunit"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; KO "K04739"; similar_genes "KAPR1_DROME(e-value:6.2e-68;bit-score:255.0)"; Scaffold002 rebuild exon 6739551 6739856 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6739920 6740014 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6740078 6740193 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6740616 6740655 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6740722 6740757 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6740820 6740959 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6741024 6741145 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6741349 6741544 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild exon 6741644 6741708 . + . gene_id "RvY_05646"; transcript_id "RvY_05646.1"; Scaffold002 rebuild transcript 6742297 6746036 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; gene_name "ANK"; annotation "Apoptosis-stimulating of p53 protein 1"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[SH3_2] Variant SH3 domain|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[SH3_1] SH3 domain|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "ASPP1_HUMAN(e-value:3.9e-59;bit-score:226.0)"; Scaffold002 rebuild exon 6742297 6742511 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6742572 6742781 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6742866 6743019 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6743138 6743727 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6743905 6744370 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6744727 6744797 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6744897 6745185 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild exon 6746034 6746036 . - . gene_id "RvY_05647"; transcript_id "RvY_05647.1"; Scaffold002 rebuild transcript 6747289 6747519 . + . gene_id "RvY_05648"; transcript_id "RvY_05648.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 6747289 6747519 . + . gene_id "RvY_05648"; transcript_id "RvY_05648.1"; Scaffold002 rebuild transcript 6747639 6748598 . + . gene_id "RvY_05649"; transcript_id "RvY_05649.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 6747639 6747955 . + . gene_id "RvY_05649"; transcript_id "RvY_05649.1"; Scaffold002 rebuild exon 6748096 6748285 . + . gene_id "RvY_05649"; transcript_id "RvY_05649.1"; Scaffold002 rebuild exon 6748440 6748598 . + . gene_id "RvY_05649"; transcript_id "RvY_05649.1"; Scaffold002 rebuild transcript 6749245 6752333 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; gene_name "(1)ALOX5"; annotation "(1)arachidonate 5-lipoxygenase [EC:1.13.11.34](2,3,4)hypothetical protein."; Pfam "(1)[PLAT] PLAT/LH2 domain|[Lipoxygenase]"; EC "(1)EC1.13.11.34"; KO "(1)K00461"; Scaffold002 rebuild exon 6749245 6749317 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6749379 6749494 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6749558 6749649 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6749768 6749873 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6749983 6750043 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6750127 6750219 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6750303 6750420 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6750505 6750572 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6750655 6750683 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6750744 6750842 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6750920 6751052 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6751121 6751359 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6751425 6751620 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6751844 6751909 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6751974 6752165 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild exon 6752251 6752333 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.1"; Scaffold002 rebuild transcript 6749640 6751866 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; gene_name "(1)ALOX5"; annotation "(1)arachidonate 5-lipoxygenase [EC:1.13.11.34](2,3,4)hypothetical protein."; Pfam "(1)[PLAT] PLAT/LH2 domain|[Lipoxygenase]"; EC "(1)EC1.13.11.34"; KO "(1)K00461"; Scaffold002 rebuild exon 6749640 6749650 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6749768 6749873 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6749983 6750043 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6750127 6750219 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6750303 6750420 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6750505 6750572 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6750655 6750683 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6750744 6750842 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6750920 6751052 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6751121 6751359 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6751425 6751620 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild exon 6751844 6751866 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.2"; Scaffold002 rebuild transcript 6749245 6751099 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; gene_name "(1)ALOX5"; annotation "(1)arachidonate 5-lipoxygenase [EC:1.13.11.34](2,3,4)hypothetical protein."; Pfam "(1)[PLAT] PLAT/LH2 domain|[Lipoxygenase]"; EC "(1)EC1.13.11.34"; KO "(1)K00461"; Scaffold002 rebuild exon 6749245 6749317 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6749379 6749494 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6749558 6749649 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6749768 6749873 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6749983 6750043 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6750127 6750219 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6750303 6750420 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6750505 6750572 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6750655 6750683 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6750744 6750842 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild exon 6750920 6751099 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.3"; Scaffold002 rebuild transcript 6748901 6750556 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; gene_name "(1)ALOX5"; annotation "(1)arachidonate 5-lipoxygenase [EC:1.13.11.34](2,3,4)hypothetical protein."; Pfam "(1)[PLAT] PLAT/LH2 domain|[Lipoxygenase]"; EC "(1)EC1.13.11.34"; KO "(1)K00461"; Scaffold002 rebuild exon 6748901 6749185 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6749260 6749317 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6749379 6749494 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6749558 6749649 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6749768 6749873 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6749983 6750043 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6750127 6750219 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6750303 6750420 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild exon 6750505 6750556 . - . gene_id "RvY_05650"; transcript_id "RvY_05650.4"; Scaffold002 rebuild transcript 6753261 6765717 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; gene_name "ADAMTS9"; annotation "A disintegrin and metalloproteinase with thrombospondin motifs 9"; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Pep_M12B_propep] Reprolysin family propeptide|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like|[ADAM_spacer1] ADAM-TS Spacer 1|[TSP_1] Thrombospondin type 1 domain"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; EC "EC3.4.24.-"; KO "K08624"; similar_genes "ATS9_HUMAN(e-value:1.3e-53;bit-score:207.0)"; Scaffold002 rebuild exon 6753261 6753410 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6753589 6753679 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6753748 6753850 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6753906 6754305 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6754475 6754654 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6755352 6755600 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6755983 6756515 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6756687 6757136 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6757313 6757897 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6757971 6758094 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6758348 6758514 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6758589 6758684 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6758848 6758965 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6759072 6759208 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6759276 6759457 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6759522 6760076 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6760281 6760682 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6761147 6761508 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6763859 6764292 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild exon 6764985 6765717 . - . gene_id "RvY_05651"; transcript_id "RvY_05651.1"; Scaffold002 rebuild transcript 6765888 6766346 . + . gene_id "RvY_05652"; transcript_id "RvY_05652.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6765888 6766346 . + . gene_id "RvY_05652"; transcript_id "RvY_05652.1"; Scaffold002 rebuild transcript 6766686 6766871 . + . gene_id "RvY_05653"; transcript_id "RvY_05653.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6766686 6766871 . + . gene_id "RvY_05653"; transcript_id "RvY_05653.1"; Scaffold002 rebuild transcript 6770270 6774100 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; gene_name "RBM15"; annotation "putative Putative RNA-binding protein 15B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_3] RNA binding motif|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[SPOC]|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K13190"; similar_genes "RB15B_HUMAN(e-value:3.5e-28;bit-score:123.0)"; Scaffold002 rebuild exon 6770270 6770650 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6770886 6771161 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6771472 6771786 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6771898 6772130 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6772199 6772417 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6772587 6772923 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6773189 6773344 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild exon 6774086 6774100 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.1"; Scaffold002 rebuild transcript 6770270 6774100 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; gene_name "RBM15"; annotation "putative Putative RNA-binding protein 15B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_3] RNA binding motif|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[SPOC]|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K13190"; similar_genes "RB15B_HUMAN(e-value:3.5e-28;bit-score:123.0)"; Scaffold002 rebuild exon 6770270 6770650 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6770886 6771161 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6771472 6771786 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6771898 6772130 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6772199 6772417 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6772668 6772923 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6773189 6773344 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild exon 6774086 6774100 . - . gene_id "RvY_05654"; transcript_id "RvY_05654.2"; Scaffold002 rebuild transcript 6777332 6783733 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; gene_name "Ig4_L1-NrCAM_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Bravo_FIGEY] C-terminal domain of Fibronectin type III|[Ig_2] Immunoglobulin domain|[Herpes_gE] Alphaherpesvirus glycoprotein E|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth."; similar_genes "NRG_DROME(e-value:9.4e-16;bit-score:81.0)"; Scaffold002 rebuild exon 6777332 6777498 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6777561 6777726 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6777814 6777978 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6778041 6778649 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6778795 6778973 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6779050 6779398 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6779472 6779640 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6780129 6780612 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6780710 6780869 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6781089 6781216 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6781333 6781479 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6781709 6781840 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6781918 6781976 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6782047 6782175 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6782258 6782681 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6783140 6783451 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild exon 6783604 6783733 . - . gene_id "RvY_05655"; transcript_id "RvY_05655.1"; Scaffold002 rebuild transcript 6785161 6787157 . + . gene_id "RvY_05656"; transcript_id "RvY_05656.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6785161 6785196 . + . gene_id "RvY_05656"; transcript_id "RvY_05656.1"; Scaffold002 rebuild exon 6786014 6786209 . + . gene_id "RvY_05656"; transcript_id "RvY_05656.1"; Scaffold002 rebuild exon 6786997 6787157 . + . gene_id "RvY_05656"; transcript_id "RvY_05656.1"; Scaffold002 rebuild transcript 6790511 6790780 . - . gene_id "RvY_05657"; transcript_id "RvY_05657.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6790511 6790780 . - . gene_id "RvY_05657"; transcript_id "RvY_05657.1"; Scaffold002 rebuild transcript 6790868 6791219 . + . gene_id "RvY_05658"; transcript_id "RvY_05658.1"; gene_name "H3"; annotation "hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; Scaffold002 rebuild exon 6790868 6790996 . + . gene_id "RvY_05658"; transcript_id "RvY_05658.1"; Scaffold002 rebuild exon 6791082 6791219 . + . gene_id "RvY_05658"; transcript_id "RvY_05658.1"; Scaffold002 rebuild transcript 6793573 6793803 . - . gene_id "RvY_05659"; transcript_id "RvY_05659.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6793573 6793803 . - . gene_id "RvY_05659"; transcript_id "RvY_05659.1"; Scaffold002 rebuild transcript 6795029 6798474 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; gene_name "MAP3K12"; annotation "mitogen-activated protein kinase kinase kinase 12 [EC:2.7.11.25]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "EC2.7.11.25"; KO "K04423"; similar_genes "M3K13_BOVIN(e-value:3.8e-21;bit-score:99.0)"; Scaffold002 rebuild exon 6795029 6795054 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; Scaffold002 rebuild exon 6795126 6795718 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; Scaffold002 rebuild exon 6795921 6796107 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; Scaffold002 rebuild exon 6796186 6796377 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; Scaffold002 rebuild exon 6796451 6796638 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; Scaffold002 rebuild exon 6796862 6798474 . + . gene_id "RvY_05660"; transcript_id "RvY_05660.1"; Scaffold002 rebuild transcript 6796309 6797039 . - . gene_id "RvY_05661"; transcript_id "RvY_05661.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6796309 6796333 . - . gene_id "RvY_05661"; transcript_id "RvY_05661.1"; Scaffold002 rebuild exon 6796473 6796631 . - . gene_id "RvY_05661"; transcript_id "RvY_05661.1"; Scaffold002 rebuild exon 6796888 6797039 . - . gene_id "RvY_05661"; transcript_id "RvY_05661.1"; Scaffold002 rebuild transcript 6799324 6799542 . + . gene_id "RvY_05662"; transcript_id "RvY_05662.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6799324 6799542 . + . gene_id "RvY_05662"; transcript_id "RvY_05662.1"; Scaffold002 rebuild transcript 6805725 6809972 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; gene_name "FOXP"; annotation "putative Forkhead box protein P1"; Pfam "[Fork_head] Fork head domain"; CDD "FORKHEAD. FORKHEAD, also known as a ""winged helix"""; KO "K09409"; similar_genes "FOXP1_CHICK(e-value:1.3e-38;bit-score:157.0)"; Scaffold002 rebuild exon 6805725 6805925 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6807475 6807708 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6807812 6807992 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6808085 6808286 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6808400 6808601 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6808669 6808921 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6809002 6809180 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6809248 6809369 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6809436 6809705 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild exon 6809786 6809972 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.1"; Scaffold002 rebuild transcript 6805725 6809972 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; gene_name "FOXP"; annotation "putative Forkhead box protein P1"; Pfam "[Fork_head] Fork head domain"; CDD "FORKHEAD. FORKHEAD, also known as a ""winged helix"""; KO "K09409"; similar_genes "FOXP1_CHICK(e-value:1.3e-38;bit-score:157.0)"; Scaffold002 rebuild exon 6805725 6805925 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6807475 6807532 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6807593 6807708 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6807812 6807992 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6808085 6808286 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6808400 6808601 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6808669 6808921 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6809002 6809180 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6809248 6809369 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6809436 6809705 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild exon 6809786 6809972 . + . gene_id "RvY_05663"; transcript_id "RvY_05663.2"; Scaffold002 rebuild transcript 6810774 6819244 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; gene_name "NR1N"; annotation "Nuclear hormone receptor E75"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain of REV-ERB receptors, members of the nuclear receptor superfamily. The ligand binding domain (LBD) of REV-ERB receptors: REV-ERBs are transcriptional regulators belonging to the nuclear receptor superfamily. They regulate a number of physiological functions including the circadian rhythm, lipid metabolism, and cellular differentiation. The LBD domain of REV-ERB is unusual in the nuclear receptor family by lacking the AF-2 region that is responsible for coactivator interaction. REV-ERBs act as constitutive repressors because of their inability to bind coactivators. REV-ERB receptors can bind to two classes of DNA response elements as either a monomer or heterodimer, indicating functional diversity. When bound to the DNA, they recruit corepressors (NcoR/histone deacetylase 3) to the promoter, resulting in repression of the target gene. The porphyrin heme has been demonstrated to function as a ligand for REV-ERB. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, REV-ERB receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; KO "K08701"; similar_genes "E75_METEN(e-value:8.6e-57;bit-score:218.0)"; Scaffold002 rebuild exon 6810774 6811004 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6811068 6811654 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6811779 6812249 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6812752 6812983 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6813461 6813637 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6813778 6814016 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6814105 6814249 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6818478 6818522 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6818603 6818646 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild exon 6819160 6819244 . - . gene_id "RvY_05664"; transcript_id "RvY_05664.1"; Scaffold002 rebuild transcript 6817289 6817582 . + . gene_id "RvY_05665"; transcript_id "RvY_05665.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6817289 6817582 . + . gene_id "RvY_05665"; transcript_id "RvY_05665.1"; Scaffold002 rebuild transcript 6822913 6823476 . + . gene_id "RvY_05666"; transcript_id "RvY_05666.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6822913 6823101 . + . gene_id "RvY_05666"; transcript_id "RvY_05666.1"; Scaffold002 rebuild exon 6823327 6823476 . + . gene_id "RvY_05666"; transcript_id "RvY_05666.1"; Scaffold002 rebuild transcript 6827648 6827914 . + . gene_id "RvY_05667"; transcript_id "RvY_05667.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6827648 6827914 . + . gene_id "RvY_05667"; transcript_id "RvY_05667.1"; Scaffold002 rebuild transcript 6829219 6833102 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; gene_name "FN3"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain"; CDD "Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins."; Scaffold002 rebuild exon 6829219 6829307 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6829408 6829467 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6829535 6829759 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6829889 6829931 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6829998 6830080 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6830161 6830605 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6830885 6831362 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6831427 6831526 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6831651 6831968 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild exon 6832253 6833102 . - . gene_id "RvY_05668"; transcript_id "RvY_05668.1"; Scaffold002 rebuild transcript 6829510 6829893 . + . gene_id "RvY_05669"; transcript_id "RvY_05669.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6829510 6829893 . + . gene_id "RvY_05669"; transcript_id "RvY_05669.1"; Scaffold002 rebuild transcript 6834573 6837884 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 6834573 6834609 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; Scaffold002 rebuild exon 6834710 6834852 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; Scaffold002 rebuild exon 6834934 6835025 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; Scaffold002 rebuild exon 6835091 6835532 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; Scaffold002 rebuild exon 6835617 6836394 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; Scaffold002 rebuild exon 6837076 6837884 . + . gene_id "RvY_05670"; transcript_id "RvY_05670.1"; Scaffold002 rebuild transcript 6838096 6838445 . - . gene_id "RvY_05671"; transcript_id "RvY_05671.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6838096 6838315 . - . gene_id "RvY_05671"; transcript_id "RvY_05671.1"; Scaffold002 rebuild exon 6838387 6838445 . - . gene_id "RvY_05671"; transcript_id "RvY_05671.1"; Scaffold002 rebuild transcript 6839086 6839902 . - . gene_id "RvY_05672"; transcript_id "RvY_05672.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6839086 6839207 . - . gene_id "RvY_05672"; transcript_id "RvY_05672.1"; Scaffold002 rebuild exon 6839299 6839326 . - . gene_id "RvY_05672"; transcript_id "RvY_05672.1"; Scaffold002 rebuild exon 6839394 6839518 . - . gene_id "RvY_05672"; transcript_id "RvY_05672.1"; Scaffold002 rebuild exon 6839599 6839902 . - . gene_id "RvY_05672"; transcript_id "RvY_05672.1"; Scaffold002 rebuild transcript 6840432 6845066 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; gene_name "BRAF"; annotation "putative Raf homolog serine/threonine-protein kinase phl"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[RBD] Raf-like Ras-binding domain"; EC "EC2.7.11.1"; KO "K04365"; similar_genes "KRAF1_DROME(e-value:7.2e-35;bit-score:145.0)"; Scaffold002 rebuild exon 6840432 6840755 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6840814 6841070 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6841434 6841872 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6842106 6842290 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6842363 6842491 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6842624 6842829 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6842912 6843193 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6843647 6843765 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6843863 6844071 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6844154 6844346 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6844676 6844777 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild exon 6844854 6845066 . - . gene_id "RvY_05673"; transcript_id "RvY_05673.1"; Scaffold002 rebuild transcript 6846516 6849079 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; gene_name "FBXL10"; annotation "F-box and leucine-rich repeat protein 10 [EC:1.14.11.27]"; Pfam "[Cupin_8] Cupin-like domain|[JmjC] JmjC domain, hydroxylase"; EC "EC1.14.11.27"; KO "K10276"; similar_genes "KDM2A_HUMAN(e-value:2.5e-18;bit-score:90.0)"; Scaffold002 rebuild exon 6846516 6846623 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6846709 6846865 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6846936 6847014 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6847130 6847173 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6847266 6847474 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6847570 6847716 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6847810 6847857 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6847987 6848137 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6848206 6848321 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6848389 6848619 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild exon 6848690 6849079 . + . gene_id "RvY_05674"; transcript_id "RvY_05674.1"; Scaffold002 rebuild transcript 6849458 6850450 . - . gene_id "RvY_05675"; transcript_id "RvY_05675.1"; annotation "hypothetical protein."; Pfam "[D123]"; similar_genes "CD123_DICDI(e-value:5.2e-10;bit-score:62.0)"; Scaffold002 rebuild exon 6849458 6850450 . - . gene_id "RvY_05675"; transcript_id "RvY_05675.1"; Scaffold002 rebuild transcript 6851158 6852605 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.1"; gene_name "(1)CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "(1)Chromatin organization modifier domain."; Scaffold002 rebuild exon 6851158 6851858 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.1"; Scaffold002 rebuild exon 6851934 6852058 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.1"; Scaffold002 rebuild exon 6852125 6852401 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.1"; Scaffold002 rebuild exon 6852479 6852605 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.1"; Scaffold002 rebuild transcript 6851158 6851898 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.2"; gene_name "(1)CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "(1)Chromatin organization modifier domain."; Scaffold002 rebuild exon 6851158 6851898 . + . gene_id "RvY_05676"; transcript_id "RvY_05676.2"; Scaffold002 rebuild transcript 6855722 6862143 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; gene_name "SH3"; annotation "putative LIM and SH3 domain protein Lasp"; Pfam "[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "LASP1_DROME(e-value:6.9e-29;bit-score:125.0)"; Scaffold002 rebuild exon 6855722 6855777 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6859201 6859285 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6859360 6859678 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6859803 6860027 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6860118 6860231 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6860373 6860927 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6861194 6861750 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6861816 6861864 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6861939 6862020 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild exon 6862101 6862143 . + . gene_id "RvY_05677"; transcript_id "RvY_05677.1"; Scaffold002 rebuild transcript 6856010 6857836 . - . gene_id "RvY_05678"; transcript_id "RvY_05678.1"; gene_name "FUT5"; annotation "galactoside alpha-1,3-fucosyltransferase 5 [EC:2.4.1.65]"; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "EC2.4.1.214|EC2.4.1.65"; KO "K07633"; similar_genes "FUCTA_DROME(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 6856010 6856603 . - . gene_id "RvY_05678"; transcript_id "RvY_05678.1"; Scaffold002 rebuild exon 6856796 6857021 . - . gene_id "RvY_05678"; transcript_id "RvY_05678.1"; Scaffold002 rebuild exon 6857089 6857173 . - . gene_id "RvY_05678"; transcript_id "RvY_05678.1"; Scaffold002 rebuild exon 6857419 6857836 . - . gene_id "RvY_05678"; transcript_id "RvY_05678.1"; Scaffold002 rebuild transcript 6862686 6863694 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.1"; annotation "hypothetical protein."; Pfam "[FAIM1] Fas apoptotic inhibitory molecule (FAIM1)"; similar_genes "(2)FAIM1_HUMAN(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 6862686 6862841 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.1"; Scaffold002 rebuild exon 6862914 6863189 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.1"; Scaffold002 rebuild exon 6863461 6863694 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.1"; Scaffold002 rebuild transcript 6862686 6863694 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.2"; annotation "hypothetical protein."; Pfam "[FAIM1] Fas apoptotic inhibitory molecule (FAIM1)"; similar_genes "(2)FAIM1_HUMAN(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 6862686 6862841 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.2"; Scaffold002 rebuild exon 6862914 6863189 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.2"; Scaffold002 rebuild exon 6863461 6863508 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.2"; Scaffold002 rebuild exon 6863584 6863694 . - . gene_id "RvY_05679"; transcript_id "RvY_05679.2"; Scaffold002 rebuild transcript 6864802 6865374 . + . gene_id "RvY_05680"; transcript_id "RvY_05680.1"; gene_name "PTZ00146"; annotation "hypothetical protein."; CDD "fibrillarin; Provisional"; similar_genes "GRP1_PETHY(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 6864802 6865374 . + . gene_id "RvY_05680"; transcript_id "RvY_05680.1"; Scaffold002 rebuild transcript 6867633 6868200 . - . gene_id "RvY_05681"; transcript_id "RvY_05681.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6867633 6867776 . - . gene_id "RvY_05681"; transcript_id "RvY_05681.1"; Scaffold002 rebuild exon 6867781 6868200 . - . gene_id "RvY_05681"; transcript_id "RvY_05681.1"; Scaffold002 rebuild transcript 6868553 6868979 . + . gene_id "RvY_05682"; transcript_id "RvY_05682.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6868553 6868713 . + . gene_id "RvY_05682"; transcript_id "RvY_05682.1"; Scaffold002 rebuild exon 6868940 6868979 . + . gene_id "RvY_05682"; transcript_id "RvY_05682.1"; Scaffold002 rebuild transcript 6870204 6872714 . + . gene_id "RvY_05683"; transcript_id "RvY_05683.1"; annotation "hypothetical protein."; Pfam "[GKAP] Guanylate-kinase-associated protein (GKAP) protein"; Scaffold002 rebuild exon 6870204 6870395 . + . gene_id "RvY_05683"; transcript_id "RvY_05683.1"; Scaffold002 rebuild exon 6870494 6871207 . + . gene_id "RvY_05683"; transcript_id "RvY_05683.1"; Scaffold002 rebuild exon 6871458 6871944 . + . gene_id "RvY_05683"; transcript_id "RvY_05683.1"; Scaffold002 rebuild exon 6872032 6872123 . + . gene_id "RvY_05683"; transcript_id "RvY_05683.1"; Scaffold002 rebuild exon 6872235 6872714 . + . gene_id "RvY_05683"; transcript_id "RvY_05683.1"; Scaffold002 rebuild transcript 6873538 6873818 . - . gene_id "RvY_05684"; transcript_id "RvY_05684.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6873538 6873647 . - . gene_id "RvY_05684"; transcript_id "RvY_05684.1"; Scaffold002 rebuild exon 6873761 6873818 . - . gene_id "RvY_05684"; transcript_id "RvY_05684.1"; Scaffold002 rebuild transcript 6874415 6878933 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; gene_name "ATP1A"; annotation "Sodium/potassium-transporting ATPase subunit alpha-1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "K01539"; similar_genes "AT1A1_XENLA(e-value:2.6e-236;bit-score:814.0)"; Scaffold002 rebuild exon 6874415 6874439 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6874536 6874597 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6874687 6874746 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6874850 6875053 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6875239 6875602 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6875669 6875937 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6875996 6876194 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6876279 6876523 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6876587 6876782 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6876858 6877025 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6877223 6877585 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6877651 6877752 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6877824 6877978 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6878050 6878173 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6878235 6878380 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6878444 6878574 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6878639 6878749 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild exon 6878822 6878933 . + . gene_id "RvY_05685"; transcript_id "RvY_05685.1"; Scaffold002 rebuild transcript 6879612 6881962 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; gene_name "asnB"; annotation "Asparagine synthetase [glutamine-hydrolyzing]"; Pfam "[Asn_synthase] Asparagine synthase|[GATase_7] Glutamine amidotransferase domain|[GATase_6] Glutamine amidotransferase domain"; CDD "asparagine synthetase B; Provisional"; EC "EC6.3.5.4"; KO "K01953"; similar_genes "ASNS_CHICK(e-value:1.2e-87;bit-score:320.0)"; Scaffold002 rebuild exon 6879612 6879863 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild exon 6880072 6880312 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild exon 6880449 6880625 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild exon 6880690 6880910 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild exon 6881013 6881139 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild exon 6881204 6881649 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild exon 6881717 6881962 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.1"; Scaffold002 rebuild transcript 6879612 6882080 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; gene_name "asnB"; annotation "Asparagine synthetase [glutamine-hydrolyzing]"; Pfam "[Asn_synthase] Asparagine synthase|[GATase_7] Glutamine amidotransferase domain|[GATase_6] Glutamine amidotransferase domain"; CDD "asparagine synthetase B; Provisional"; EC "EC6.3.5.4"; KO "K01953"; similar_genes "ASNS_CHICK(e-value:1.2e-87;bit-score:320.0)"; Scaffold002 rebuild exon 6879612 6879863 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6880072 6880312 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6880449 6880625 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6880690 6880910 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6881013 6881139 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6881204 6881649 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6881717 6881951 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild exon 6882076 6882080 . + . gene_id "RvY_05686"; transcript_id "RvY_05686.2"; Scaffold002 rebuild transcript 6882495 6883025 . - . gene_id "RvY_05687"; transcript_id "RvY_05687.1"; gene_name "H3"; annotation "hypothetical protein."; CDD "Histone H3."; Scaffold002 rebuild exon 6882495 6882770 . - . gene_id "RvY_05687"; transcript_id "RvY_05687.1"; Scaffold002 rebuild exon 6882858 6883025 . - . gene_id "RvY_05687"; transcript_id "RvY_05687.1"; Scaffold002 rebuild transcript 6884439 6884968 . + . gene_id "RvY_05688"; transcript_id "RvY_05688.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6884439 6884505 . + . gene_id "RvY_05688"; transcript_id "RvY_05688.1"; Scaffold002 rebuild exon 6884651 6884790 . + . gene_id "RvY_05688"; transcript_id "RvY_05688.1"; Scaffold002 rebuild exon 6884963 6884968 . + . gene_id "RvY_05688"; transcript_id "RvY_05688.1"; Scaffold002 rebuild transcript 6886109 6886354 . - . gene_id "RvY_05689"; transcript_id "RvY_05689.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6886109 6886354 . - . gene_id "RvY_05689"; transcript_id "RvY_05689.1"; Scaffold002 rebuild transcript 6887947 6888168 . + . gene_id "RvY_05690"; transcript_id "RvY_05690.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6887947 6887997 . + . gene_id "RvY_05690"; transcript_id "RvY_05690.1"; Scaffold002 rebuild exon 6888112 6888168 . + . gene_id "RvY_05690"; transcript_id "RvY_05690.1"; Scaffold002 rebuild transcript 6892738 6897703 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; gene_name "(1)ROR2(2)CRD_TK_ROR_like"; annotation "(1)putative Tyrosine-protein kinase transmembrane receptor Ror(2)hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Fz]|[Kringle]|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain"; CDD "(1)Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions.(2)Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2."; EC "EC2.7.10.1"; KO "(1)K05123"; similar_genes "(1)ROR1_DROME(e-value:7.0e-31;bit-score:132.0)(2)DDR2_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 6892738 6892769 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6893966 6894081 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6894148 6894328 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6894393 6894427 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6894497 6894568 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6894644 6895052 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6895342 6895745 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6895850 6896229 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6896296 6896435 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6896508 6896729 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild exon 6896983 6897703 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.1"; Scaffold002 rebuild transcript 6892738 6896757 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; gene_name "(1)ROR2(2)CRD_TK_ROR_like"; annotation "(1)putative Tyrosine-protein kinase transmembrane receptor Ror(2)hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Fz]|[Kringle]|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain"; CDD "(1)Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions.(2)Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2."; EC "EC2.7.10.1"; KO "(1)K05123"; similar_genes "(1)ROR1_DROME(e-value:7.0e-31;bit-score:132.0)(2)DDR2_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 6892738 6892769 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6893966 6894081 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6894148 6894328 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6894393 6894427 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6894497 6894568 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6894644 6895052 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6895342 6895745 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6895850 6896229 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6896296 6896435 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild exon 6896508 6896757 . + . gene_id "RvY_05691"; transcript_id "RvY_05691.2"; Scaffold002 rebuild transcript 6897940 6900788 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; annotation "hypothetical protein."; Pfam "[HOOK] HOOK protein"; Scaffold002 rebuild exon 6897940 6898125 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6898186 6898257 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6898364 6898583 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6898662 6898774 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6898856 6899020 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6899080 6899165 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6899243 6899514 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6899592 6899686 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6899766 6899941 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6900012 6900095 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6900171 6900291 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6900383 6900428 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6900508 6900593 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild exon 6900726 6900788 . - . gene_id "RvY_05692"; transcript_id "RvY_05692.1"; Scaffold002 rebuild transcript 6901716 6902661 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; gene_name "RP-L18e"; annotation "60S ribosomal protein L18"; Pfam "[Ribosomal_L18e] Ribosomal protein L18e/L15"; KO "K02883"; similar_genes "RL18_TIMBA(e-value:5.4e-67;bit-score:252.0)"; Scaffold002 rebuild exon 6901716 6901791 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; Scaffold002 rebuild exon 6901869 6901938 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; Scaffold002 rebuild exon 6902039 6902261 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; Scaffold002 rebuild exon 6902331 6902438 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; Scaffold002 rebuild exon 6902507 6902593 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; Scaffold002 rebuild exon 6902659 6902661 . - . gene_id "RvY_05693"; transcript_id "RvY_05693.1"; Scaffold002 rebuild transcript 6903461 6905214 . - . gene_id "RvY_05694"; transcript_id "RvY_05694.1"; gene_name "RanBD"; annotation "hypothetical protein."; Pfam "[Ran_BP1] RanBP1 domain"; CDD "Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the Scaffold002 rebuild exon 6903461 6904431 . - . gene_id "RvY_05694"; transcript_id "RvY_05694.1"; Scaffold002 rebuild exon 6904489 6904838 . - . gene_id "RvY_05694"; transcript_id "RvY_05694.1"; Scaffold002 rebuild exon 6904938 6905079 . - . gene_id "RvY_05694"; transcript_id "RvY_05694.1"; Scaffold002 rebuild exon 6905154 6905214 . - . gene_id "RvY_05694"; transcript_id "RvY_05694.1"; Scaffold002 rebuild transcript 6906265 6906561 . - . gene_id "RvY_05695"; transcript_id "RvY_05695.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6906265 6906561 . - . gene_id "RvY_05695"; transcript_id "RvY_05695.1"; Scaffold002 rebuild transcript 6906587 6907532 . - . gene_id "RvY_05696"; transcript_id "RvY_05696.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6906587 6906670 . - . gene_id "RvY_05696"; transcript_id "RvY_05696.1"; Scaffold002 rebuild exon 6906753 6906951 . - . gene_id "RvY_05696"; transcript_id "RvY_05696.1"; Scaffold002 rebuild exon 6907393 6907532 . - . gene_id "RvY_05696"; transcript_id "RvY_05696.1"; Scaffold002 rebuild transcript 6910326 6912064 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; annotation "hypothetical protein."; Pfam "[DBD_Tnp_Hermes] Hermes transposase DNA-binding domain"; Scaffold002 rebuild exon 6910326 6910471 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; Scaffold002 rebuild exon 6910703 6911154 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; Scaffold002 rebuild exon 6911233 6911269 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; Scaffold002 rebuild exon 6911360 6911417 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; Scaffold002 rebuild exon 6911532 6911823 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; Scaffold002 rebuild exon 6912006 6912064 . + . gene_id "RvY_05697"; transcript_id "RvY_05697.1"; Scaffold002 rebuild transcript 6913405 6916673 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; annotation "Sodium-dependent phosphate transporter 1-B"; Pfam "[PHO4] Phosphate transporter family"; KO "K14640"; similar_genes "S20AB_DANRE(e-value:9.9e-58;bit-score:221.0)"; Scaffold002 rebuild exon 6913405 6913478 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6913563 6913729 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6913840 6913870 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6913958 6914112 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6914191 6914315 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6914382 6914904 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6915155 6915516 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6915784 6916025 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6916095 6916262 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild exon 6916496 6916673 . - . gene_id "RvY_05698"; transcript_id "RvY_05698.1"; Scaffold002 rebuild transcript 6918431 6921091 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; annotation "Sodium-dependent phosphate transporter 2"; Pfam "[PHO4] Phosphate transporter family"; KO "K14640"; similar_genes "S20A2_XENTR(e-value:6.3e-51;bit-score:198.0)"; Scaffold002 rebuild exon 6918431 6918668 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild exon 6918781 6918966 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild exon 6919045 6919154 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild exon 6919212 6919969 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild exon 6920304 6920498 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild exon 6920581 6920748 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild exon 6920824 6921091 . - . gene_id "RvY_05699"; transcript_id "RvY_05699.1"; Scaffold002 rebuild transcript 6921677 6923169 . + . gene_id "RvY_05700"; transcript_id "RvY_05700.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6921677 6921827 . + . gene_id "RvY_05700"; transcript_id "RvY_05700.1"; Scaffold002 rebuild exon 6921899 6922276 . + . gene_id "RvY_05700"; transcript_id "RvY_05700.1"; Scaffold002 rebuild exon 6922529 6923169 . + . gene_id "RvY_05700"; transcript_id "RvY_05700.1"; Scaffold002 rebuild transcript 6923357 6925159 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; gene_name "K01045"; annotation "arylesterase [EC:3.1.1.2]"; Pfam "[Arylesterase]|[SGL] SMP-30/Gluconolaconase/LRE-like region"; EC "EC3.1.1.2"; KO "K01045"; Scaffold002 rebuild exon 6923357 6923524 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6923604 6923729 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6923824 6923917 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6924036 6924236 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6924366 6924438 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6924502 6924658 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6924780 6924835 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6924933 6925021 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild exon 6925095 6925159 . - . gene_id "RvY_05701"; transcript_id "RvY_05701.1"; Scaffold002 rebuild transcript 6925616 6927515 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; gene_name "(1)K01045"; annotation "(1)arylesterase [EC:3.1.1.2](2)hypothetical protein."; Pfam "[Arylesterase]|(1)[SGL] SMP-30/Gluconolaconase/LRE-like region"; EC "(1)EC3.1.1.2"; KO "(1)K01045"; Scaffold002 rebuild exon 6925616 6925801 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6925868 6925953 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6926037 6926170 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6926238 6926441 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6926522 6926663 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6926721 6926763 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6926835 6926939 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6927023 6927078 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6927217 6927287 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild exon 6927442 6927515 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.1"; Scaffold002 rebuild transcript 6926216 6927515 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; gene_name "(1)K01045"; annotation "(1)arylesterase [EC:3.1.1.2](2)hypothetical protein."; Pfam "[Arylesterase]|(1)[SGL] SMP-30/Gluconolaconase/LRE-like region"; EC "(1)EC3.1.1.2"; KO "(1)K01045"; Scaffold002 rebuild exon 6926216 6926441 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild exon 6926522 6926663 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild exon 6926721 6926763 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild exon 6926835 6926939 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild exon 6927023 6927078 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild exon 6927217 6927287 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild exon 6927442 6927515 . - . gene_id "RvY_05702"; transcript_id "RvY_05702.2"; Scaffold002 rebuild transcript 6928835 6931117 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6928835 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild exon 6929358 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild exon 6930099 6930174 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild exon 6930275 6930406 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild exon 6930548 6930611 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild exon 6930945 6931117 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.1"; Scaffold002 rebuild transcript 6928785 6930643 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6928785 6928793 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; Scaffold002 rebuild exon 6928874 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; Scaffold002 rebuild exon 6929358 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; Scaffold002 rebuild exon 6930099 6930174 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; Scaffold002 rebuild exon 6930275 6930643 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.2"; Scaffold002 rebuild transcript 6928835 6931117 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6928835 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; Scaffold002 rebuild exon 6929358 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; Scaffold002 rebuild exon 6930099 6930174 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; Scaffold002 rebuild exon 6930548 6930611 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; Scaffold002 rebuild exon 6930945 6931117 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.3"; Scaffold002 rebuild transcript 6928785 6930725 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6928785 6928793 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6928874 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6929358 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6930099 6930174 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6930275 6930406 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6930548 6930611 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild exon 6930691 6930725 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.4"; Scaffold002 rebuild transcript 6928785 6930725 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6928785 6928793 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild exon 6928874 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild exon 6929358 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild exon 6930099 6930174 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild exon 6930548 6930611 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild exon 6930691 6930725 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.5"; Scaffold002 rebuild transcript 6928785 6930243 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.6"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6928785 6928793 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.6"; Scaffold002 rebuild exon 6928874 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.6"; Scaffold002 rebuild exon 6929358 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.6"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.6"; Scaffold002 rebuild exon 6930099 6930243 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.6"; Scaffold002 rebuild transcript 6929211 6930243 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.7"; gene_name "(1)SMYD"; annotation "(1)SET and MYND domain-containing protein(2,3,4,5,6,7)hypothetical protein."; Pfam "[zf-MYND] MYND finger"; KO "(1)K11426"; Scaffold002 rebuild exon 6929211 6929253 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.7"; Scaffold002 rebuild exon 6929354 6929661 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.7"; Scaffold002 rebuild exon 6929723 6930033 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.7"; Scaffold002 rebuild exon 6930099 6930243 . - . gene_id "RvY_05703"; transcript_id "RvY_05703.7"; Scaffold002 rebuild transcript 6932396 6932937 . - . gene_id "RvY_05704"; transcript_id "RvY_05704.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6932396 6932412 . - . gene_id "RvY_05704"; transcript_id "RvY_05704.1"; Scaffold002 rebuild exon 6932499 6932672 . - . gene_id "RvY_05704"; transcript_id "RvY_05704.1"; Scaffold002 rebuild exon 6932769 6932937 . - . gene_id "RvY_05704"; transcript_id "RvY_05704.1"; Scaffold002 rebuild transcript 6933398 6934851 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; gene_name "K00944"; annotation "putative GTP:AMP phosphotransferase mitochondrial"; Pfam "[ADK_lid] Adenylate kinase, Scaffold002 rebuild exon 6933398 6933524 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; Scaffold002 rebuild exon 6933844 6933924 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; Scaffold002 rebuild exon 6933992 6934029 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; Scaffold002 rebuild exon 6934151 6934326 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; Scaffold002 rebuild exon 6934395 6934511 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; Scaffold002 rebuild exon 6934623 6934851 . - . gene_id "RvY_05705"; transcript_id "RvY_05705.1"; Scaffold002 rebuild transcript 6935116 6936240 . + . gene_id "RvY_05706"; transcript_id "RvY_05706.1"; gene_name "GTF3A"; annotation "general transcription factor IIIA"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09191"; Scaffold002 rebuild exon 6935116 6935219 . + . gene_id "RvY_05706"; transcript_id "RvY_05706.1"; Scaffold002 rebuild exon 6935314 6935765 . + . gene_id "RvY_05706"; transcript_id "RvY_05706.1"; Scaffold002 rebuild exon 6935828 6936240 . + . gene_id "RvY_05706"; transcript_id "RvY_05706.1"; Scaffold002 rebuild transcript 6936769 6941494 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; gene_name "TopA"; annotation "putative DNA topoisomerase 3-beta"; Pfam "[Topoisom_bac] DNA topoisomerase|(1)[dsrm] Double-stranded RNA binding motif|[Toprim]"; CDD "Topoisomerase IA [DNA replication, recombination, and repair]"; EC "EC5.99.1.2"; similar_genes "TOP3B_DROME(e-value:2.3e-29;bit-score:127.0)"; Scaffold002 rebuild exon 6936769 6936978 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6937038 6937388 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6937453 6937654 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6937944 6938221 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6938290 6938643 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6938849 6939182 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6939250 6939779 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6940005 6940641 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6940730 6940819 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6941023 6941052 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6941167 6941282 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild exon 6941384 6941494 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.1"; Scaffold002 rebuild transcript 6936769 6939412 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; gene_name "TopA"; annotation "putative DNA topoisomerase 3-beta"; Pfam "[Topoisom_bac] DNA topoisomerase|(1)[dsrm] Double-stranded RNA binding motif|[Toprim]"; CDD "Topoisomerase IA [DNA replication, recombination, and repair]"; EC "EC5.99.1.2"; similar_genes "TOP3B_DROME(e-value:2.3e-29;bit-score:127.0)"; Scaffold002 rebuild exon 6936769 6936978 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild exon 6937038 6937388 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild exon 6937453 6937654 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild exon 6937944 6938221 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild exon 6938290 6938643 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild exon 6938849 6939182 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild exon 6939375 6939412 . + . gene_id "RvY_05707"; transcript_id "RvY_05707.2"; Scaffold002 rebuild transcript 6941700 6943152 . - . gene_id "RvY_05708"; transcript_id "RvY_05708.1"; gene_name "QDPR"; annotation "putative Dihydropteridine reductase"; Pfam "[adh_short] short chain dehydrogenase"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.5.1.34"; KO "K00357"; similar_genes "DHPR_RAT(e-value:1.1e-48;bit-score:191.0)"; Scaffold002 rebuild exon 6941700 6941883 . - . gene_id "RvY_05708"; transcript_id "RvY_05708.1"; Scaffold002 rebuild exon 6941968 6942217 . - . gene_id "RvY_05708"; transcript_id "RvY_05708.1"; Scaffold002 rebuild exon 6942311 6942500 . - . gene_id "RvY_05708"; transcript_id "RvY_05708.1"; Scaffold002 rebuild exon 6943060 6943152 . - . gene_id "RvY_05708"; transcript_id "RvY_05708.1"; Scaffold002 rebuild transcript 6948828 6950622 . + . gene_id "RvY_05709"; transcript_id "RvY_05709.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 6948828 6948930 . + . gene_id "RvY_05709"; transcript_id "RvY_05709.1"; Scaffold002 rebuild exon 6949705 6949878 . + . gene_id "RvY_05709"; transcript_id "RvY_05709.1"; Scaffold002 rebuild exon 6950013 6950112 . + . gene_id "RvY_05709"; transcript_id "RvY_05709.1"; Scaffold002 rebuild exon 6950295 6950622 . + . gene_id "RvY_05709"; transcript_id "RvY_05709.1"; Scaffold002 rebuild transcript 6951346 6952835 . - . gene_id "RvY_05710"; transcript_id "RvY_05710.1"; annotation "hypothetical protein."; Pfam "[N6-adenineMlase] Probable N6-adenine methyltransferase"; Scaffold002 rebuild exon 6951346 6952065 . - . gene_id "RvY_05710"; transcript_id "RvY_05710.1"; Scaffold002 rebuild exon 6952254 6952835 . - . gene_id "RvY_05710"; transcript_id "RvY_05710.1"; Scaffold002 rebuild transcript 6953321 6954166 . + . gene_id "RvY_05711"; transcript_id "RvY_05711.1"; gene_name "NDUFAB1"; annotation "NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1 [EC:1.6.5.3 1.6.99.3]"; Pfam "[PP-binding] Phosphopantetheine attachment site"; CDD "acyl carrier protein; Provisional"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03955"; similar_genes "ACPM_DROME(e-value:2.4e-16;bit-score:83.0)"; Scaffold002 rebuild exon 6953321 6953789 . + . gene_id "RvY_05711"; transcript_id "RvY_05711.1"; Scaffold002 rebuild exon 6954150 6954166 . + . gene_id "RvY_05711"; transcript_id "RvY_05711.1"; Scaffold002 rebuild transcript 6954475 6954684 . - . gene_id "RvY_05712"; transcript_id "RvY_05712.1"; annotation "hypothetical protein."; Pfam "[CHCH]"; Scaffold002 rebuild exon 6954475 6954684 . - . gene_id "RvY_05712"; transcript_id "RvY_05712.1"; Scaffold002 rebuild transcript 6955278 6956286 . + . gene_id "RvY_05713"; transcript_id "RvY_05713.1"; gene_name "PSMB7"; annotation "putative Proteasome subunit beta type-7"; Pfam "[Proteasome] Proteasome subunit|[Pr_beta_C] Proteasome beta subunits C terminal"; CDD "proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02739"; similar_genes "PSB7_MOUSE(e-value:1.6e-32;bit-score:137.0)"; Scaffold002 rebuild exon 6955278 6955575 . + . gene_id "RvY_05713"; transcript_id "RvY_05713.1"; Scaffold002 rebuild exon 6955748 6956286 . + . gene_id "RvY_05713"; transcript_id "RvY_05713.1"; Scaffold002 rebuild transcript 6956512 6959216 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; annotation "hypothetical protein."; Pfam "[Anillin] Cell division protein anillin"; Scaffold002 rebuild exon 6956512 6956651 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6956814 6956952 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6957109 6957368 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6957625 6957796 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6957988 6958162 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6958292 6958478 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6959040 6959101 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild exon 6959173 6959216 . - . gene_id "RvY_05714"; transcript_id "RvY_05714.1"; Scaffold002 rebuild transcript 6961157 6964921 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; gene_name "(1)HMG1(2)2A060605"; annotation "(1)3-hydroxy-3-methylglutaryl-coenzyme A reductase 2(2)hypothetical protein."; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation|[HMG-CoA_red] Hydroxymethylglutaryl-coenzyme A reductase"; CDD "3-hydroxy-3-methylglutaryl-coenzyme A reductase."; EC "EC1.1.1.34"; KO "(1)K00021"; similar_genes "(1)HMDH2_DICDI(e-value:4.9e-53;bit-score:205.0)(2)HMDH_BLAGE(e-value:9.8e-22;bit-score:101.0)"; Scaffold002 rebuild exon 6961157 6961324 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6961471 6961582 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6961671 6962059 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6962271 6962512 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6962593 6962962 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6963038 6963238 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6963351 6963443 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6963528 6963684 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6963895 6964535 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6964607 6964761 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild exon 6964831 6964921 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.1"; Scaffold002 rebuild transcript 6961157 6963500 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; gene_name "(1)HMG1(2)2A060605"; annotation "(1)3-hydroxy-3-methylglutaryl-coenzyme A reductase 2(2)hypothetical protein."; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation|[HMG-CoA_red] Hydroxymethylglutaryl-coenzyme A reductase"; CDD "3-hydroxy-3-methylglutaryl-coenzyme A reductase."; EC "EC1.1.1.34"; KO "(1)K00021"; similar_genes "(1)HMDH2_DICDI(e-value:4.9e-53;bit-score:205.0)(2)HMDH_BLAGE(e-value:9.8e-22;bit-score:101.0)"; Scaffold002 rebuild exon 6961157 6961324 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild exon 6961471 6961582 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild exon 6961671 6962059 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild exon 6962271 6962512 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild exon 6962593 6962962 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild exon 6963038 6963238 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild exon 6963351 6963500 . + . gene_id "RvY_05715"; transcript_id "RvY_05715.2"; Scaffold002 rebuild transcript 6967188 6967403 . - . gene_id "RvY_05716"; transcript_id "RvY_05716.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6967188 6967403 . - . gene_id "RvY_05716"; transcript_id "RvY_05716.1"; Scaffold002 rebuild transcript 6968702 6971595 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; annotation "hypothetical protein."; Pfam "[MAP65_ASE1] Microtubule associated protein (MAP65/ASE1 family)"; Scaffold002 rebuild exon 6968702 6968856 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6968919 6969198 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6969318 6969554 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6969641 6969781 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6969850 6970002 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6970068 6970215 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6970297 6970433 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6970511 6970606 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6970671 6970898 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6971138 6971212 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6971302 6971514 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild exon 6971584 6971595 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.1"; Scaffold002 rebuild transcript 6968702 6970907 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; annotation "hypothetical protein."; Pfam "[MAP65_ASE1] Microtubule associated protein (MAP65/ASE1 family)"; Scaffold002 rebuild exon 6968702 6968856 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6968919 6969198 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6969318 6969554 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6969641 6969781 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6969850 6970002 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6970068 6970215 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6970297 6970433 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6970511 6970606 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild exon 6970671 6970907 . + . gene_id "RvY_05717"; transcript_id "RvY_05717.2"; Scaffold002 rebuild transcript 6971930 6972583 . - . gene_id "RvY_05718"; transcript_id "RvY_05718.1"; gene_name "K00326"; annotation "cytochrome-b5 reductase [EC:1.6.2.2]"; Pfam "[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; EC "EC1.6.2.2"; KO "K00326"; similar_genes "YDAA_SCHPO(e-value:2.3e-08;bit-score:57.0)"; Scaffold002 rebuild exon 6971930 6972002 . - . gene_id "RvY_05718"; transcript_id "RvY_05718.1"; Scaffold002 rebuild exon 6972062 6972377 . - . gene_id "RvY_05718"; transcript_id "RvY_05718.1"; Scaffold002 rebuild exon 6972445 6972583 . - . gene_id "RvY_05718"; transcript_id "RvY_05718.1"; Scaffold002 rebuild transcript 6973127 6975524 . + . gene_id "RvY_05719"; transcript_id "RvY_05719.1"; annotation "hypothetical protein."; Pfam "[Radial_spoke] Radial spokehead-like protein"; similar_genes "RSH4A_MOUSE(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 6973127 6974297 . + . gene_id "RvY_05719"; transcript_id "RvY_05719.1"; Scaffold002 rebuild exon 6974488 6975100 . + . gene_id "RvY_05719"; transcript_id "RvY_05719.1"; Scaffold002 rebuild exon 6975293 6975524 . + . gene_id "RvY_05719"; transcript_id "RvY_05719.1"; Scaffold002 rebuild transcript 6977791 6980341 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.1"; gene_name "(1)ADRB2"; annotation "(1)adrenergic receptor, beta 2(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04142"; Scaffold002 rebuild exon 6977791 6978157 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.1"; Scaffold002 rebuild exon 6978389 6978805 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.1"; Scaffold002 rebuild exon 6978958 6979177 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.1"; Scaffold002 rebuild exon 6979263 6979287 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.1"; Scaffold002 rebuild exon 6980063 6980341 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.1"; Scaffold002 rebuild transcript 6977791 6979124 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.2"; gene_name "(1)ADRB2"; annotation "(1)adrenergic receptor, beta 2(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04142"; Scaffold002 rebuild exon 6977791 6978157 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.2"; Scaffold002 rebuild exon 6978389 6978805 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.2"; Scaffold002 rebuild exon 6978958 6979124 . - . gene_id "RvY_05720"; transcript_id "RvY_05720.2"; Scaffold002 rebuild transcript 6982090 6983913 . - . gene_id "RvY_05721"; transcript_id "RvY_05721.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 6982090 6983181 . - . gene_id "RvY_05721"; transcript_id "RvY_05721.1"; Scaffold002 rebuild exon 6983398 6983543 . - . gene_id "RvY_05721"; transcript_id "RvY_05721.1"; Scaffold002 rebuild exon 6983634 6983913 . - . gene_id "RvY_05721"; transcript_id "RvY_05721.1"; Scaffold002 rebuild transcript 6984412 6985191 . - . gene_id "RvY_05722"; transcript_id "RvY_05722.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6984412 6985191 . - . gene_id "RvY_05722"; transcript_id "RvY_05722.1"; Scaffold002 rebuild transcript 6985692 6985977 . + . gene_id "RvY_05723"; transcript_id "RvY_05723.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6985692 6985792 . + . gene_id "RvY_05723"; transcript_id "RvY_05723.1"; Scaffold002 rebuild exon 6985935 6985977 . + . gene_id "RvY_05723"; transcript_id "RvY_05723.1"; Scaffold002 rebuild transcript 6986303 6987054 . - . gene_id "RvY_05724"; transcript_id "RvY_05724.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6986303 6986344 . - . gene_id "RvY_05724"; transcript_id "RvY_05724.1"; Scaffold002 rebuild exon 6986701 6987054 . - . gene_id "RvY_05724"; transcript_id "RvY_05724.1"; Scaffold002 rebuild transcript 6986959 6990027 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; gene_name "HS6ST3"; annotation "putative Heparan-sulfate 6-O-sulfotransferase 2"; Pfam "[Sulfotransfer_2] Sulfotransferase family"; EC "EC2.8.2.-"; KO "K08103"; similar_genes "H6ST2_DANRE(e-value:1.4e-29;bit-score:127.0)"; Scaffold002 rebuild exon 6986959 6987024 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; Scaffold002 rebuild exon 6987177 6987511 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; Scaffold002 rebuild exon 6987764 6987849 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; Scaffold002 rebuild exon 6987922 6987994 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; Scaffold002 rebuild exon 6989050 6989210 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; Scaffold002 rebuild exon 6989588 6990027 . + . gene_id "RvY_05725"; transcript_id "RvY_05725.1"; Scaffold002 rebuild transcript 6990713 6991015 . + . gene_id "RvY_05726"; transcript_id "RvY_05726.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6990713 6991015 . + . gene_id "RvY_05726"; transcript_id "RvY_05726.1"; Scaffold002 rebuild transcript 6991363 6993067 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.1"; gene_name "(1,2,3)globin"; annotation "hypothetical protein."; Pfam "[Globin]"; CDD "(1,2,3)Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold002 rebuild exon 6991363 6992004 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.1"; Scaffold002 rebuild exon 6992080 6992112 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.1"; Scaffold002 rebuild exon 6992900 6993067 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.1"; Scaffold002 rebuild transcript 6991475 6993067 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.2"; gene_name "(1,2,3)globin"; annotation "hypothetical protein."; Pfam "[Globin]"; CDD "(1,2,3)Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold002 rebuild exon 6991475 6991737 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.2"; Scaffold002 rebuild exon 6991812 6992004 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.2"; Scaffold002 rebuild exon 6992080 6992112 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.2"; Scaffold002 rebuild exon 6992900 6993067 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.2"; Scaffold002 rebuild transcript 6991475 6992247 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.3"; gene_name "(1,2,3)globin"; annotation "hypothetical protein."; Pfam "[Globin]"; CDD "(1,2,3)Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold002 rebuild exon 6991475 6991737 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.3"; Scaffold002 rebuild exon 6991812 6992004 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.3"; Scaffold002 rebuild exon 6992080 6992247 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.3"; Scaffold002 rebuild transcript 6991363 6991934 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.4"; gene_name "(1,2,3)globin"; annotation "hypothetical protein."; Pfam "[Globin]"; CDD "(1,2,3)Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold002 rebuild exon 6991363 6991737 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.4"; Scaffold002 rebuild exon 6991812 6991934 . + . gene_id "RvY_05727"; transcript_id "RvY_05727.4"; Scaffold002 rebuild transcript 6995860 6996105 . + . gene_id "RvY_05728"; transcript_id "RvY_05728.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6995860 6996105 . + . gene_id "RvY_05728"; transcript_id "RvY_05728.1"; Scaffold002 rebuild transcript 6996851 6997456 . + . gene_id "RvY_05729"; transcript_id "RvY_05729.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6996851 6997011 . + . gene_id "RvY_05729"; transcript_id "RvY_05729.1"; Scaffold002 rebuild exon 6997116 6997277 . + . gene_id "RvY_05729"; transcript_id "RvY_05729.1"; Scaffold002 rebuild exon 6997450 6997456 . + . gene_id "RvY_05729"; transcript_id "RvY_05729.1"; Scaffold002 rebuild transcript 6998005 6998214 . + . gene_id "RvY_05730"; transcript_id "RvY_05730.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 6998005 6998214 . + . gene_id "RvY_05730"; transcript_id "RvY_05730.1"; Scaffold002 rebuild transcript 6999964 7001975 . + . gene_id "RvY_05731"; transcript_id "RvY_05731.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold002 rebuild exon 6999964 7000103 . + . gene_id "RvY_05731"; transcript_id "RvY_05731.1"; Scaffold002 rebuild exon 7000182 7000329 . + . gene_id "RvY_05731"; transcript_id "RvY_05731.1"; Scaffold002 rebuild exon 7000387 7000698 . + . gene_id "RvY_05731"; transcript_id "RvY_05731.1"; Scaffold002 rebuild exon 7000764 7001405 . + . gene_id "RvY_05731"; transcript_id "RvY_05731.1"; Scaffold002 rebuild exon 7001691 7001975 . + . gene_id "RvY_05731"; transcript_id "RvY_05731.1"; Scaffold002 rebuild transcript 7002417 7003123 . + . gene_id "RvY_05732"; transcript_id "RvY_05732.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7002417 7002522 . + . gene_id "RvY_05732"; transcript_id "RvY_05732.1"; Scaffold002 rebuild exon 7002607 7002708 . + . gene_id "RvY_05732"; transcript_id "RvY_05732.1"; Scaffold002 rebuild exon 7002785 7002841 . + . gene_id "RvY_05732"; transcript_id "RvY_05732.1"; Scaffold002 rebuild exon 7002924 7003123 . + . gene_id "RvY_05732"; transcript_id "RvY_05732.1"; Scaffold002 rebuild transcript 7002423 7002638 . - . gene_id "RvY_05733"; transcript_id "RvY_05733.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7002423 7002638 . - . gene_id "RvY_05733"; transcript_id "RvY_05733.1"; Scaffold002 rebuild transcript 7003530 7005510 . - . gene_id "RvY_05734"; transcript_id "RvY_05734.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7003530 7003676 . - . gene_id "RvY_05734"; transcript_id "RvY_05734.1"; Scaffold002 rebuild exon 7003863 7004469 . - . gene_id "RvY_05734"; transcript_id "RvY_05734.1"; Scaffold002 rebuild exon 7004804 7005510 . - . gene_id "RvY_05734"; transcript_id "RvY_05734.1"; Scaffold002 rebuild transcript 7007266 7023023 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; annotation "hypothetical protein."; Pfam "[ZZ] Zinc finger, ZZ type|[efhand_1] EF hand|[efhand_2] EF-hand"; similar_genes "DMDD_DROME(e-value:1.5e-24;bit-score:111.0)"; Scaffold002 rebuild exon 7007266 7007281 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7011671 7011743 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7014276 7014340 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7018720 7018794 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7018870 7019255 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7019695 7019939 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7020055 7020081 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7020164 7020328 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7020462 7020942 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7021154 7021492 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7021557 7021621 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7021730 7022034 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7022101 7022469 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild exon 7022653 7023023 . + . gene_id "RvY_05735"; transcript_id "RvY_05735.1"; Scaffold002 rebuild transcript 7023545 7026076 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; gene_name "HX"; annotation "hypothetical protein."; CDD "Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat."; Scaffold002 rebuild exon 7023545 7024102 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7024170 7024256 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7024319 7024367 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7024503 7024780 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7024849 7025043 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7025156 7025292 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7025363 7025389 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7025459 7025650 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7025822 7025870 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild exon 7025948 7026076 . - . gene_id "RvY_05736"; transcript_id "RvY_05736.1"; Scaffold002 rebuild transcript 7027386 7028442 . + . gene_id "RvY_05737"; transcript_id "RvY_05737.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7027386 7027730 . + . gene_id "RvY_05737"; transcript_id "RvY_05737.1"; Scaffold002 rebuild exon 7028413 7028442 . + . gene_id "RvY_05737"; transcript_id "RvY_05737.1"; Scaffold002 rebuild transcript 7029007 7030350 . + . gene_id "RvY_05738"; transcript_id "RvY_05738.1"; annotation "putative Vesicular GABA transporter"; Pfam "[Aa_trans] Transmembrane amino acid transporter protein"; KO "K15015"; similar_genes "UNC47_CAEEL(e-value:1.6e-30;bit-score:130.0)"; Scaffold002 rebuild exon 7029007 7029386 . + . gene_id "RvY_05738"; transcript_id "RvY_05738.1"; Scaffold002 rebuild exon 7029669 7030350 . + . gene_id "RvY_05738"; transcript_id "RvY_05738.1"; Scaffold002 rebuild transcript 7030660 7033069 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; gene_name "K00139"; annotation "Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP+]"; Pfam "[Aldedh] Aldehyde dehydrogenase family"; CDD "Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC"; EC "EC1.2.1.16|EC1.2.1.24"; KO "K00139"; similar_genes "SSDH1_SCHPO(e-value:7.6e-58;bit-score:221.0)"; Scaffold002 rebuild exon 7030660 7030800 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7030890 7031044 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7031111 7031249 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7031335 7031637 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7031720 7031974 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7032041 7032211 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7032289 7032372 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7032528 7032576 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7032657 7032861 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild exon 7032934 7033069 . - . gene_id "RvY_05739"; transcript_id "RvY_05739.1"; Scaffold002 rebuild transcript 7035915 7037676 . + . gene_id "RvY_05740"; transcript_id "RvY_05740.1"; gene_name "mtlK"; annotation "putative Mannitol 2-dehydrogenase"; Pfam "[Mannitol_dh] Mannitol dehydrogenase Rossmann domain|[Mannitol_dh_C] Mannitol dehydrogenase C-terminal domain"; CDD "Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]"; EC "EC1.1.1.67"; KO "K00045"; similar_genes "M2DH_PHANO(e-value:4.2e-33;bit-score:139.0)"; Scaffold002 rebuild exon 7035915 7036609 . + . gene_id "RvY_05740"; transcript_id "RvY_05740.1"; Scaffold002 rebuild exon 7036836 7037676 . + . gene_id "RvY_05740"; transcript_id "RvY_05740.1"; Scaffold002 rebuild transcript 7037844 7040642 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; annotation "hypothetical protein."; Pfam "[MAM]"; Scaffold002 rebuild exon 7037844 7038142 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7038207 7038626 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7038702 7038950 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7039036 7039123 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7039224 7039613 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7039682 7040067 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7040169 7040293 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7040390 7040501 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild exon 7040570 7040642 . - . gene_id "RvY_05741"; transcript_id "RvY_05741.1"; Scaffold002 rebuild transcript 7041241 7051306 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; gene_name "COL4A"; annotation "Collagen alpha-2(IV) chain"; Pfam "[Collagen] Collagen triple helix repeat (20 copies)|[C4] C-terminal tandem repeated domain in type 4 procollagen"; KO "K06237"; similar_genes "CO4A2_ASCSU(e-value:1.4e-105;bit-score:380.0)"; Scaffold002 rebuild exon 7041241 7041374 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7041446 7041569 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7041631 7041917 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7041994 7042237 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7042307 7042422 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7042489 7042584 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7042652 7042849 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7042924 7043223 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7043281 7043388 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7043454 7043589 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7043662 7043920 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7044171 7044546 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7044627 7044684 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7044754 7044944 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7045006 7045192 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7045257 7045462 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7045534 7045695 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7045761 7046082 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7046379 7046838 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7046906 7047041 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7047134 7047341 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7047424 7047468 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7047538 7047654 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7047734 7047943 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7048171 7048269 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7048340 7048462 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7048523 7048585 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7048661 7048705 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7048780 7048914 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7049002 7049235 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7049313 7049361 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild exon 7051248 7051306 . - . gene_id "RvY_05742"; transcript_id "RvY_05742.1"; Scaffold002 rebuild transcript 7053202 7070041 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; gene_name "LRP2"; annotation "Low-density lipoprotein receptor-related protein 2"; Pfam "[Ldl_recept_b] Low-density lipoprotein receptor repeat class B|[cEGF] Complement Clr-like EGF-like|[Arylesterase]|[EGF_CA] Calcium-binding EGF domain|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Low-density lipoprotein receptor domain class A."; KO "K06233"; similar_genes "LRP2_RAT(e-value:5.0e-74;bit-score:275.0)"; Scaffold002 rebuild exon 7053202 7053362 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7053455 7053617 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7053683 7053873 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7053952 7054039 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7054107 7055044 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7055114 7055515 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7055583 7055891 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7055947 7056183 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7056246 7056498 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7056595 7056866 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7056935 7057583 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7057645 7057849 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7058068 7059007 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7059167 7059574 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7059641 7059763 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7059826 7060077 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7060137 7060265 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7060330 7060503 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7060573 7061076 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7061226 7061748 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7061885 7062304 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7062366 7063054 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7063284 7063872 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7064145 7064546 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7064748 7066068 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7066145 7066235 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7066325 7066464 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7066523 7066931 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7067111 7067272 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7067348 7067662 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7067887 7069087 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7069278 7069699 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7069779 7069898 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild exon 7069978 7070041 . - . gene_id "RvY_05743"; transcript_id "RvY_05743.1"; Scaffold002 rebuild transcript 7070403 7073506 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.1"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; similar_genes "(1)LRP1B_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 7070403 7070432 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.1"; Scaffold002 rebuild exon 7070520 7070626 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.1"; Scaffold002 rebuild exon 7070820 7071188 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.1"; Scaffold002 rebuild exon 7073425 7073506 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.1"; Scaffold002 rebuild transcript 7070516 7071095 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.2"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; similar_genes "(1)LRP1B_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 7070516 7070626 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.2"; Scaffold002 rebuild exon 7070820 7071095 . - . gene_id "RvY_05744"; transcript_id "RvY_05744.2"; Scaffold002 rebuild transcript 7075619 7081936 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PERC_ANOGA(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 7075619 7075707 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7075770 7075933 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7076023 7076149 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7076352 7076740 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7076806 7076970 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7077201 7077296 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7077388 7077553 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7077622 7077827 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7077893 7078203 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7078265 7078398 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7078474 7078502 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7078647 7079267 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7079348 7079457 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7079743 7080082 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7080148 7080284 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7080367 7080408 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7080482 7081196 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7081271 7081381 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7081479 7081645 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild exon 7081703 7081936 . + . gene_id "RvY_05745"; transcript_id "RvY_05745.1"; Scaffold002 rebuild transcript 7082747 7083463 . + . gene_id "RvY_05746"; transcript_id "RvY_05746.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7082747 7082863 . + . gene_id "RvY_05746"; transcript_id "RvY_05746.1"; Scaffold002 rebuild exon 7082927 7083463 . + . gene_id "RvY_05746"; transcript_id "RvY_05746.1"; Scaffold002 rebuild transcript 7083891 7084495 . + . gene_id "RvY_05747"; transcript_id "RvY_05747.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7083891 7084019 . + . gene_id "RvY_05747"; transcript_id "RvY_05747.1"; Scaffold002 rebuild exon 7084121 7084495 . + . gene_id "RvY_05747"; transcript_id "RvY_05747.1"; Scaffold002 rebuild transcript 7085069 7085865 . + . gene_id "RvY_05748"; transcript_id "RvY_05748.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7085069 7085203 . + . gene_id "RvY_05748"; transcript_id "RvY_05748.1"; Scaffold002 rebuild exon 7085272 7085865 . + . gene_id "RvY_05748"; transcript_id "RvY_05748.1"; Scaffold002 rebuild transcript 7086313 7087069 . + . gene_id "RvY_05749"; transcript_id "RvY_05749.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7086313 7086495 . + . gene_id "RvY_05749"; transcript_id "RvY_05749.1"; Scaffold002 rebuild exon 7086606 7086639 . + . gene_id "RvY_05749"; transcript_id "RvY_05749.1"; Scaffold002 rebuild exon 7086780 7087069 . + . gene_id "RvY_05749"; transcript_id "RvY_05749.1"; Scaffold002 rebuild transcript 7089073 7091028 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; gene_name "LIC"; annotation "hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "GBRAL_DROME(e-value:1.6e-17;bit-score:87.0)"; Scaffold002 rebuild exon 7089073 7089099 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7089183 7089208 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7089278 7089484 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7089548 7089630 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7089698 7089838 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7089916 7090065 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7090178 7090213 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7090284 7090495 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild exon 7090606 7091028 . + . gene_id "RvY_05750"; transcript_id "RvY_05750.1"; Scaffold002 rebuild transcript 7091213 7095338 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; gene_name "GABRA1"; annotation "gamma-aminobutyric acid (GABA) A receptor, alpha 1"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K05175"; similar_genes "GBRAL_DROME(e-value:1.5e-24;bit-score:111.0)"; Scaffold002 rebuild exon 7091213 7091306 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7091367 7091397 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7091469 7091688 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7091791 7091936 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7092021 7092099 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7092166 7092339 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7092421 7092458 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7092545 7092688 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7092795 7092847 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7092971 7093000 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7093085 7093191 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7093260 7093350 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7093416 7093441 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7093518 7093585 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7094929 7095206 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild exon 7095277 7095338 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.1"; Scaffold002 rebuild transcript 7091213 7095338 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; gene_name "GABRA1"; annotation "gamma-aminobutyric acid (GABA) A receptor, alpha 1"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K05175"; similar_genes "GBRAL_DROME(e-value:1.5e-24;bit-score:111.0)"; Scaffold002 rebuild exon 7091213 7091306 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7091367 7091397 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7091469 7091685 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7091791 7091936 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7092021 7092099 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7092166 7092339 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7092421 7092458 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7092545 7092688 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7092795 7092847 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7092971 7093000 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7093085 7093191 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7093260 7093350 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7093416 7093441 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7093518 7093585 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7094929 7095206 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild exon 7095277 7095338 . - . gene_id "RvY_05751"; transcript_id "RvY_05751.2"; Scaffold002 rebuild transcript 7096234 7096814 . + . gene_id "RvY_05752"; transcript_id "RvY_05752.1"; annotation "hypothetical protein."; Pfam "[Complex1_LYR_2] Complex1_LYR-like"; Scaffold002 rebuild exon 7096234 7096296 . + . gene_id "RvY_05752"; transcript_id "RvY_05752.1"; Scaffold002 rebuild exon 7096413 7096562 . + . gene_id "RvY_05752"; transcript_id "RvY_05752.1"; Scaffold002 rebuild exon 7096713 7096814 . + . gene_id "RvY_05752"; transcript_id "RvY_05752.1"; Scaffold002 rebuild transcript 7097777 7098148 . - . gene_id "RvY_05753"; transcript_id "RvY_05753.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7097777 7098148 . - . gene_id "RvY_05753"; transcript_id "RvY_05753.1"; Scaffold002 rebuild transcript 7098393 7099682 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7098393 7098495 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; Scaffold002 rebuild exon 7098566 7098685 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; Scaffold002 rebuild exon 7098923 7099030 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; Scaffold002 rebuild exon 7099126 7099302 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; Scaffold002 rebuild exon 7099388 7099588 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; Scaffold002 rebuild exon 7099669 7099682 . + . gene_id "RvY_05754"; transcript_id "RvY_05754.1"; Scaffold002 rebuild transcript 7100971 7111697 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; gene_name "(1,2)TPM1(3)TPM3"; annotation "(1,2,3)Tropomyosin(4)putative Tropomyosin"; Pfam "[Tropomyosin]|[Tropomyosin_1] Tropomyosin like"; KO "(1,2)K10373(3)K09290"; similar_genes "(1)TPM_TRIPS(e-value:1.6e-83;bit-score:307.0)(2)TPM_HAELO(e-value:9.0e-116;bit-score:414.0)(3)TPM_TRIPS(e-value:1.0e-80;bit-score:297.0)(4)TPM_HAELO(e-value:5.2e-44;bit-score:175.0)"; Scaffold002 rebuild exon 7100971 7101008 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7102697 7102829 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7102915 7103040 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7109181 7109314 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7109491 7109608 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7110777 7110847 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7111039 7111114 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7111183 7111245 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7111315 7111384 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild exon 7111615 7111697 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.1"; Scaffold002 rebuild transcript 7102716 7112036 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; gene_name "(1,2)TPM1(3)TPM3"; annotation "(1,2,3)Tropomyosin(4)putative Tropomyosin"; Pfam "[Tropomyosin]|[Tropomyosin_1] Tropomyosin like"; KO "(1,2)K10373(3)K09290"; similar_genes "(1)TPM_TRIPS(e-value:1.6e-83;bit-score:307.0)(2)TPM_HAELO(e-value:9.0e-116;bit-score:414.0)(3)TPM_TRIPS(e-value:1.0e-80;bit-score:297.0)(4)TPM_HAELO(e-value:5.2e-44;bit-score:175.0)"; Scaffold002 rebuild exon 7102716 7102829 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7102915 7103040 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7109181 7109314 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7110151 7110339 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7111039 7111114 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7111183 7111245 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7111315 7111384 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild exon 7111954 7112036 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.2"; Scaffold002 rebuild transcript 7106270 7111697 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; gene_name "(1,2)TPM1(3)TPM3"; annotation "(1,2,3)Tropomyosin(4)putative Tropomyosin"; Pfam "[Tropomyosin]|[Tropomyosin_1] Tropomyosin like"; KO "(1,2)K10373(3)K09290"; similar_genes "(1)TPM_TRIPS(e-value:1.6e-83;bit-score:307.0)(2)TPM_HAELO(e-value:9.0e-116;bit-score:414.0)(3)TPM_TRIPS(e-value:1.0e-80;bit-score:297.0)(4)TPM_HAELO(e-value:5.2e-44;bit-score:175.0)"; Scaffold002 rebuild exon 7106270 7106410 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7109181 7109314 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7109491 7109608 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7110777 7110847 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7111039 7111114 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7111183 7111245 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7111315 7111384 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild exon 7111615 7111697 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.3"; Scaffold002 rebuild transcript 7100971 7109662 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.4"; gene_name "(1,2)TPM1(3)TPM3"; annotation "(1,2,3)Tropomyosin(4)putative Tropomyosin"; Pfam "[Tropomyosin]|[Tropomyosin_1] Tropomyosin like"; KO "(1,2)K10373(3)K09290"; similar_genes "(1)TPM_TRIPS(e-value:1.6e-83;bit-score:307.0)(2)TPM_HAELO(e-value:9.0e-116;bit-score:414.0)(3)TPM_TRIPS(e-value:1.0e-80;bit-score:297.0)(4)TPM_HAELO(e-value:5.2e-44;bit-score:175.0)"; Scaffold002 rebuild exon 7100971 7101008 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.4"; Scaffold002 rebuild exon 7102697 7102829 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.4"; Scaffold002 rebuild exon 7102915 7103040 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.4"; Scaffold002 rebuild exon 7109181 7109314 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.4"; Scaffold002 rebuild exon 7109491 7109662 . + . gene_id "RvY_05755"; transcript_id "RvY_05755.4"; Scaffold002 rebuild transcript 7101960 7102453 . - . gene_id "RvY_05756"; transcript_id "RvY_05756.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7101960 7102035 . - . gene_id "RvY_05756"; transcript_id "RvY_05756.1"; Scaffold002 rebuild exon 7102173 7102453 . - . gene_id "RvY_05756"; transcript_id "RvY_05756.1"; Scaffold002 rebuild transcript 7103257 7104081 . - . gene_id "RvY_05757"; transcript_id "RvY_05757.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7103257 7103482 . - . gene_id "RvY_05757"; transcript_id "RvY_05757.1"; Scaffold002 rebuild exon 7103954 7104081 . - . gene_id "RvY_05757"; transcript_id "RvY_05757.1"; Scaffold002 rebuild transcript 7115301 7115632 . - . gene_id "RvY_05758"; transcript_id "RvY_05758.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7115301 7115355 . - . gene_id "RvY_05758"; transcript_id "RvY_05758.1"; Scaffold002 rebuild exon 7115505 7115632 . - . gene_id "RvY_05758"; transcript_id "RvY_05758.1"; Scaffold002 rebuild transcript 7115856 7127811 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; gene_name "ae"; annotation "putative Band 3 anion transport protein"; Pfam "[HCO3_cotransp] HCO3- transporter family|[Band_3_cyto] Band 3 cytoplasmic domain"; CDD "anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule."; KO "K13855"; similar_genes "B3AT_HUMAN(e-value:9.9e-41;bit-score:164.0)"; Scaffold002 rebuild exon 7115856 7115933 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7120874 7121219 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7121750 7121994 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7122439 7122934 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7123108 7123259 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7123339 7123513 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7123594 7123807 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7123893 7124310 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7124610 7125039 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7125236 7125384 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7125448 7125642 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7125850 7126170 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7126261 7126350 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7126549 7126715 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7126792 7127045 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild exon 7127375 7127811 . + . gene_id "RvY_05759"; transcript_id "RvY_05759.1"; Scaffold002 rebuild transcript 7128401 7130041 . + . gene_id "RvY_05760"; transcript_id "RvY_05760.1"; annotation "hypothetical protein."; Pfam "[DUF4201]"; Scaffold002 rebuild exon 7128401 7128559 . + . gene_id "RvY_05760"; transcript_id "RvY_05760.1"; Scaffold002 rebuild exon 7128891 7129002 . + . gene_id "RvY_05760"; transcript_id "RvY_05760.1"; Scaffold002 rebuild exon 7129095 7129405 . + . gene_id "RvY_05760"; transcript_id "RvY_05760.1"; Scaffold002 rebuild exon 7129475 7130041 . + . gene_id "RvY_05760"; transcript_id "RvY_05760.1"; Scaffold002 rebuild transcript 7130601 7130831 . + . gene_id "RvY_05761"; transcript_id "RvY_05761.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7130601 7130831 . + . gene_id "RvY_05761"; transcript_id "RvY_05761.1"; Scaffold002 rebuild transcript 7130675 7130902 . - . gene_id "RvY_05762"; transcript_id "RvY_05762.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7130675 7130902 . - . gene_id "RvY_05762"; transcript_id "RvY_05762.1"; Scaffold002 rebuild transcript 7132050 7134030 . + . gene_id "RvY_05763"; transcript_id "RvY_05763.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 7132050 7132356 . + . gene_id "RvY_05763"; transcript_id "RvY_05763.1"; Scaffold002 rebuild exon 7132436 7132944 . + . gene_id "RvY_05763"; transcript_id "RvY_05763.1"; Scaffold002 rebuild exon 7133082 7133303 . + . gene_id "RvY_05763"; transcript_id "RvY_05763.1"; Scaffold002 rebuild exon 7133395 7134030 . + . gene_id "RvY_05763"; transcript_id "RvY_05763.1"; Scaffold002 rebuild transcript 7135903 7136109 . + . gene_id "RvY_05764"; transcript_id "RvY_05764.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7135903 7136109 . + . gene_id "RvY_05764"; transcript_id "RvY_05764.1"; Scaffold002 rebuild transcript 7137676 7142287 . + . gene_id "RvY_05765"; transcript_id "RvY_05765.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7137676 7137775 . + . gene_id "RvY_05765"; transcript_id "RvY_05765.1"; Scaffold002 rebuild exon 7142028 7142287 . + . gene_id "RvY_05765"; transcript_id "RvY_05765.1"; Scaffold002 rebuild transcript 7138657 7140108 . - . gene_id "RvY_05766"; transcript_id "RvY_05766.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7138657 7139301 . - . gene_id "RvY_05766"; transcript_id "RvY_05766.1"; Scaffold002 rebuild exon 7139665 7140108 . - . gene_id "RvY_05766"; transcript_id "RvY_05766.1"; Scaffold002 rebuild transcript 7140124 7140525 . - . gene_id "RvY_05767"; transcript_id "RvY_05767.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7140124 7140176 . - . gene_id "RvY_05767"; transcript_id "RvY_05767.1"; Scaffold002 rebuild exon 7140252 7140525 . - . gene_id "RvY_05767"; transcript_id "RvY_05767.1"; Scaffold002 rebuild transcript 7142544 7143227 . - . gene_id "RvY_05768"; transcript_id "RvY_05768.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7142544 7143227 . - . gene_id "RvY_05768"; transcript_id "RvY_05768.1"; Scaffold002 rebuild transcript 7144325 7145237 . - . gene_id "RvY_05769"; transcript_id "RvY_05769.1"; gene_name "dut"; annotation "putative Deoxyuridine 5'-triphosphate nucleotidohydrolase"; Pfam "[dUTPase]"; CDD "deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD"; EC "EC3.6.1.23"; KO "K01520"; similar_genes "DUT_RAT(e-value:5.1e-42;bit-score:169.0)"; Scaffold002 rebuild exon 7144325 7144455 . - . gene_id "RvY_05769"; transcript_id "RvY_05769.1"; Scaffold002 rebuild exon 7144561 7144680 . - . gene_id "RvY_05769"; transcript_id "RvY_05769.1"; Scaffold002 rebuild exon 7144803 7144894 . - . gene_id "RvY_05769"; transcript_id "RvY_05769.1"; Scaffold002 rebuild exon 7145011 7145237 . - . gene_id "RvY_05769"; transcript_id "RvY_05769.1"; Scaffold002 rebuild transcript 7145679 7145894 . - . gene_id "RvY_05770"; transcript_id "RvY_05770.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7145679 7145894 . - . gene_id "RvY_05770"; transcript_id "RvY_05770.1"; Scaffold002 rebuild transcript 7145893 7146811 . + . gene_id "RvY_05771"; transcript_id "RvY_05771.1"; gene_name "PNK-3'Pase"; annotation "hypothetical protein."; CDD "polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78"; Scaffold002 rebuild exon 7145893 7145903 . + . gene_id "RvY_05771"; transcript_id "RvY_05771.1"; Scaffold002 rebuild exon 7145977 7146139 . + . gene_id "RvY_05771"; transcript_id "RvY_05771.1"; Scaffold002 rebuild exon 7146235 7146298 . + . gene_id "RvY_05771"; transcript_id "RvY_05771.1"; Scaffold002 rebuild exon 7146393 7146811 . + . gene_id "RvY_05771"; transcript_id "RvY_05771.1"; Scaffold002 rebuild transcript 7147523 7150492 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; gene_name "FUT8"; annotation "Alpha-(1,6)-fucosyltransferase"; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; EC "EC2.4.1.68"; KO "K00717"; similar_genes "FUT8_MOUSE(e-value:2.5e-54;bit-score:210.0)"; Scaffold002 rebuild exon 7147523 7147579 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7147642 7147902 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7147972 7148122 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7148184 7148363 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7148638 7149140 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7149408 7149522 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7149603 7149774 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7149898 7149974 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild exon 7150236 7150492 . - . gene_id "RvY_05772"; transcript_id "RvY_05772.1"; Scaffold002 rebuild transcript 7150371 7150676 . + . gene_id "RvY_05773"; transcript_id "RvY_05773.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7150371 7150676 . + . gene_id "RvY_05773"; transcript_id "RvY_05773.1"; Scaffold002 rebuild transcript 7152353 7153301 . + . gene_id "RvY_05774"; transcript_id "RvY_05774.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold002 rebuild exon 7152353 7152944 . + . gene_id "RvY_05774"; transcript_id "RvY_05774.1"; Scaffold002 rebuild exon 7153066 7153301 . + . gene_id "RvY_05774"; transcript_id "RvY_05774.1"; Scaffold002 rebuild transcript 7153570 7153929 . + . gene_id "RvY_05775"; transcript_id "RvY_05775.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7153570 7153929 . + . gene_id "RvY_05775"; transcript_id "RvY_05775.1"; Scaffold002 rebuild transcript 7154248 7154576 . - . gene_id "RvY_05776"; transcript_id "RvY_05776.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7154248 7154325 . - . gene_id "RvY_05776"; transcript_id "RvY_05776.1"; Scaffold002 rebuild exon 7154403 7154576 . - . gene_id "RvY_05776"; transcript_id "RvY_05776.1"; Scaffold002 rebuild transcript 7154611 7156263 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; gene_name "rbsK"; annotation "ribokinase [EC:2.7.1.15]"; Pfam "[PfkB] pfkB family carbohydrate kinase|[Phos_pyr_kin] Phosphomethylpyrimidine kinase"; CDD "ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not."; EC "EC2.7.1.15"; KO "K00852"; similar_genes "RBSK_HUMAN(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 7154611 7154644 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; Scaffold002 rebuild exon 7154876 7154993 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; Scaffold002 rebuild exon 7155130 7155262 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; Scaffold002 rebuild exon 7155338 7155488 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; Scaffold002 rebuild exon 7155563 7155727 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; Scaffold002 rebuild exon 7155800 7156263 . + . gene_id "RvY_05777"; transcript_id "RvY_05777.1"; Scaffold002 rebuild transcript 7156734 7160621 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; gene_name "MCM6"; annotation "Zygotic DNA replication licensing factor mcm6-A"; Pfam "[MCM] MCM2/3/5 family|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02542"; similar_genes "MC6ZA_XENLA(e-value:1.2e-102;bit-score:370.0)"; Scaffold002 rebuild exon 7156734 7156816 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7156895 7157041 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7157373 7157486 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7157548 7157850 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7157920 7158032 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7158122 7158421 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7158484 7158767 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7159041 7159433 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7159497 7159658 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7159744 7159855 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7160116 7160292 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild exon 7160359 7160621 . + . gene_id "RvY_05778"; transcript_id "RvY_05778.1"; Scaffold002 rebuild transcript 7161114 7161697 . + . gene_id "RvY_05779"; transcript_id "RvY_05779.1"; annotation "hypothetical protein."; similar_genes "GRP2_SORBI(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 7161114 7161159 . + . gene_id "RvY_05779"; transcript_id "RvY_05779.1"; Scaffold002 rebuild exon 7161227 7161397 . + . gene_id "RvY_05779"; transcript_id "RvY_05779.1"; Scaffold002 rebuild exon 7161467 7161538 . + . gene_id "RvY_05779"; transcript_id "RvY_05779.1"; Scaffold002 rebuild exon 7161600 7161697 . + . gene_id "RvY_05779"; transcript_id "RvY_05779.1"; Scaffold002 rebuild transcript 7162845 7163330 . + . gene_id "RvY_05780"; transcript_id "RvY_05780.1"; annotation "hypothetical protein."; EC "EC3.6.1.-"; similar_genes "RH37_ARATH(e-value:1.7e-06;bit-score:51.0)"; Scaffold002 rebuild exon 7162845 7163330 . + . gene_id "RvY_05780"; transcript_id "RvY_05780.1"; Scaffold002 rebuild transcript 7163921 7164688 . + . gene_id "RvY_05781"; transcript_id "RvY_05781.1"; annotation "hypothetical protein."; similar_genes "K1C10_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 7163921 7164008 . + . gene_id "RvY_05781"; transcript_id "RvY_05781.1"; Scaffold002 rebuild exon 7164110 7164487 . + . gene_id "RvY_05781"; transcript_id "RvY_05781.1"; Scaffold002 rebuild exon 7164555 7164688 . + . gene_id "RvY_05781"; transcript_id "RvY_05781.1"; Scaffold002 rebuild transcript 7165445 7166110 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.1"; annotation "hypothetical protein."; similar_genes "(1,3)GRP1_HORVU(e-value:5.4e-14;bit-score:76.0)"; Scaffold002 rebuild exon 7165445 7165742 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.1"; Scaffold002 rebuild exon 7165923 7166110 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.1"; Scaffold002 rebuild transcript 7165794 7166213 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.2"; annotation "hypothetical protein."; similar_genes "(1,3)GRP1_HORVU(e-value:5.4e-14;bit-score:76.0)"; Scaffold002 rebuild exon 7165794 7166213 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.2"; Scaffold002 rebuild transcript 7165445 7165750 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.3"; annotation "hypothetical protein."; similar_genes "(1,3)GRP1_HORVU(e-value:5.4e-14;bit-score:76.0)"; Scaffold002 rebuild exon 7165445 7165750 . + . gene_id "RvY_05782"; transcript_id "RvY_05782.3"; Scaffold002 rebuild transcript 7166217 7168170 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; gene_name "galK"; annotation "galactokinase [EC:2.7.1.6]"; Pfam "[GHMP_kinases_C] GHMP kinases C terminal|[GHMP_kinases_N] GHMP kinases N terminal domain|[GalKase_gal_bdg] Galactokinase galactose-binding signature"; CDD "galactokinase; Provisional"; EC "EC2.7.1.6"; KO "K00849"; similar_genes "GALK1_HUMAN(e-value:5.7e-22;bit-score:102.0)"; Scaffold002 rebuild exon 7166217 7166595 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild exon 7166767 7167163 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild exon 7167240 7167301 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild exon 7167400 7167541 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild exon 7167625 7167811 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild exon 7167875 7167903 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild exon 7168017 7168170 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.1"; Scaffold002 rebuild transcript 7166282 7168170 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; gene_name "galK"; annotation "galactokinase [EC:2.7.1.6]"; Pfam "[GHMP_kinases_C] GHMP kinases C terminal|[GHMP_kinases_N] GHMP kinases N terminal domain|[GalKase_gal_bdg] Galactokinase galactose-binding signature"; CDD "galactokinase; Provisional"; EC "EC2.7.1.6"; KO "K00849"; similar_genes "GALK1_HUMAN(e-value:5.7e-22;bit-score:102.0)"; Scaffold002 rebuild exon 7166282 7166359 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7166433 7166595 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7166767 7167163 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7167240 7167301 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7167400 7167541 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7167625 7167811 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7167875 7167903 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild exon 7168017 7168170 . - . gene_id "RvY_05783"; transcript_id "RvY_05783.2"; Scaffold002 rebuild transcript 7168910 7171146 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14829"; similar_genes "WDR18_RAT(e-value:1.4e-10;bit-score:64.0)"; Scaffold002 rebuild exon 7168910 7169140 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7169206 7169363 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7169606 7169730 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7169821 7169894 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7169976 7170125 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7170193 7170325 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7170418 7170551 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7170633 7170743 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7170824 7171054 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild exon 7171117 7171146 . - . gene_id "RvY_05784"; transcript_id "RvY_05784.1"; Scaffold002 rebuild transcript 7171832 7173293 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; gene_name "Ribosomal_L1"; annotation "hypothetical protein."; Pfam "[Ribosomal_L1] Ribosomal protein L1p/L10e family"; CDD "Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site."; KO "K14775"; Scaffold002 rebuild exon 7171832 7171852 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild exon 7171917 7172071 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild exon 7172165 7172315 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild exon 7172408 7172556 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild exon 7172636 7172740 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild exon 7172819 7172982 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild exon 7173082 7173293 . + . gene_id "RvY_05785"; transcript_id "RvY_05785.1"; Scaffold002 rebuild transcript 7174296 7179114 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold002 rebuild exon 7174296 7174403 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7175146 7175365 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7175437 7175589 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7175681 7175873 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7175939 7176353 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7176630 7177129 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7177189 7177339 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7177428 7177525 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7177605 7177745 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7177817 7177934 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7178046 7178167 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7178219 7178353 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild exon 7178430 7179114 . - . gene_id "RvY_05786"; transcript_id "RvY_05786.1"; Scaffold002 rebuild transcript 7179617 7181683 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7179617 7180107 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild exon 7180192 7180404 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild exon 7180542 7180579 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild exon 7180657 7180876 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild exon 7181164 7181296 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild exon 7181362 7181471 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild exon 7181563 7181683 . + . gene_id "RvY_05787"; transcript_id "RvY_05787.1"; Scaffold002 rebuild transcript 7182249 7184066 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; Scaffold002 rebuild exon 7182249 7183309 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.1"; Scaffold002 rebuild exon 7183388 7184066 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.1"; Scaffold002 rebuild transcript 7181878 7183328 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.2"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; Scaffold002 rebuild exon 7181878 7182121 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.2"; Scaffold002 rebuild exon 7182232 7183328 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.2"; Scaffold002 rebuild transcript 7182768 7184066 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.3"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; Scaffold002 rebuild exon 7182768 7183309 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.3"; Scaffold002 rebuild exon 7183388 7184066 . + . gene_id "RvY_05788"; transcript_id "RvY_05788.3"; Scaffold002 rebuild transcript 7184231 7184667 . - . gene_id "RvY_05789"; transcript_id "RvY_05789.1"; annotation "hypothetical protein."; similar_genes "ACN2_ACAGO(e-value:1.3e-19;bit-score:94.0)"; Scaffold002 rebuild exon 7184231 7184541 . - . gene_id "RvY_05789"; transcript_id "RvY_05789.1"; Scaffold002 rebuild exon 7184634 7184667 . - . gene_id "RvY_05789"; transcript_id "RvY_05789.1"; Scaffold002 rebuild transcript 7185238 7185985 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.1"; gene_name "(1)GM2A"; annotation "(1)ganglioside GM2 activator(2,3)hypothetical protein."; CDD "(1)GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family."; KO "(1)K12383"; Scaffold002 rebuild exon 7185238 7185324 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.1"; Scaffold002 rebuild exon 7185385 7185505 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.1"; Scaffold002 rebuild exon 7185576 7185783 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.1"; Scaffold002 rebuild exon 7185886 7185985 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.1"; Scaffold002 rebuild transcript 7185768 7186352 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.2"; gene_name "(1)GM2A"; annotation "(1)ganglioside GM2 activator(2,3)hypothetical protein."; CDD "(1)GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family."; KO "(1)K12383"; Scaffold002 rebuild exon 7185768 7185783 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.2"; Scaffold002 rebuild exon 7185886 7186352 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.2"; Scaffold002 rebuild transcript 7185768 7186271 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.3"; gene_name "(1)GM2A"; annotation "(1)ganglioside GM2 activator(2,3)hypothetical protein."; CDD "(1)GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family."; KO "(1)K12383"; Scaffold002 rebuild exon 7185768 7185783 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.3"; Scaffold002 rebuild exon 7185886 7186271 . - . gene_id "RvY_05790"; transcript_id "RvY_05790.3"; Scaffold002 rebuild transcript 7187153 7189772 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; gene_name "(1,3)LMAN1(2)Lectin_leg-like"; annotation "(1,3)putative Protein ERGIC-53(2)hypothetical protein."; Pfam "[Lectin_leg-like] Legume-like lectin family"; CDD "Legume-like lectin family. Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins. The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, our alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin. Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway."; KO "(1,3)K10080"; similar_genes "(1,3)LMAN1_HUMAN(e-value:6.7e-42;bit-score:168.0)(2)LMAN1_MOUSE(e-value:1.3e-25;bit-score:114.0)"; Scaffold002 rebuild exon 7187153 7187312 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7187371 7187427 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7187643 7187740 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7187815 7187922 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7187996 7188057 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7188118 7188217 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7188295 7188471 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7188545 7188712 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7188784 7188964 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7189033 7189150 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7189244 7189409 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7189522 7189622 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild exon 7189736 7189772 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.1"; Scaffold002 rebuild transcript 7187648 7189772 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; gene_name "(1,3)LMAN1(2)Lectin_leg-like"; annotation "(1,3)putative Protein ERGIC-53(2)hypothetical protein."; Pfam "[Lectin_leg-like] Legume-like lectin family"; CDD "Legume-like lectin family. Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins. The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, our alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin. Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway."; KO "(1,3)K10080"; similar_genes "(1,3)LMAN1_HUMAN(e-value:6.7e-42;bit-score:168.0)(2)LMAN1_MOUSE(e-value:1.3e-25;bit-score:114.0)"; Scaffold002 rebuild exon 7187648 7187740 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7187815 7187922 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7187996 7188057 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7188118 7188217 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7188295 7188471 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7188545 7188712 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7188784 7188964 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7189030 7189150 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7189244 7189409 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7189522 7189622 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild exon 7189736 7189772 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.2"; Scaffold002 rebuild transcript 7187153 7189029 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; gene_name "(1,3)LMAN1(2)Lectin_leg-like"; annotation "(1,3)putative Protein ERGIC-53(2)hypothetical protein."; Pfam "[Lectin_leg-like] Legume-like lectin family"; CDD "Legume-like lectin family. Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first recognized members of a family of animal lectins similar (19-24%) to the leguminous plant lectins. The alignment for this family aligns residues lying towards the N-terminus, where the similarity of VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons identified these proteins as a new family of animal lectins, our alignment also includes yeast sequences. ERGIC-53 is a 53kD protein, localized to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin. Its dysfunction has been associated with combined factors V and VIII deficiency OMIM:227300 OMIM:601567, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein- secreting pathway."; KO "(1,3)K10080"; similar_genes "(1,3)LMAN1_HUMAN(e-value:6.7e-42;bit-score:168.0)(2)LMAN1_MOUSE(e-value:1.3e-25;bit-score:114.0)"; Scaffold002 rebuild exon 7187153 7187312 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7187371 7187427 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7187643 7187740 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7187815 7187922 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7187996 7188057 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7188118 7188217 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7188295 7188471 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7188545 7188712 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild exon 7188784 7189029 . + . gene_id "RvY_05791"; transcript_id "RvY_05791.3"; Scaffold002 rebuild transcript 7190459 7191786 . - . gene_id "RvY_05792"; transcript_id "RvY_05792.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7190459 7190495 . - . gene_id "RvY_05792"; transcript_id "RvY_05792.1"; Scaffold002 rebuild exon 7191482 7191786 . - . gene_id "RvY_05792"; transcript_id "RvY_05792.1"; Scaffold002 rebuild transcript 7190902 7193558 . + . gene_id "RvY_05793"; transcript_id "RvY_05793.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7190902 7191144 . + . gene_id "RvY_05793"; transcript_id "RvY_05793.1"; Scaffold002 rebuild exon 7191213 7191260 . + . gene_id "RvY_05793"; transcript_id "RvY_05793.1"; Scaffold002 rebuild exon 7193454 7193558 . + . gene_id "RvY_05793"; transcript_id "RvY_05793.1"; Scaffold002 rebuild transcript 7194141 7194783 . + . gene_id "RvY_05794"; transcript_id "RvY_05794.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7194141 7194173 . + . gene_id "RvY_05794"; transcript_id "RvY_05794.1"; Scaffold002 rebuild exon 7194368 7194454 . + . gene_id "RvY_05794"; transcript_id "RvY_05794.1"; Scaffold002 rebuild exon 7194526 7194783 . + . gene_id "RvY_05794"; transcript_id "RvY_05794.1"; Scaffold002 rebuild transcript 7195883 7196368 . + . gene_id "RvY_05795"; transcript_id "RvY_05795.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7195883 7196368 . + . gene_id "RvY_05795"; transcript_id "RvY_05795.1"; Scaffold002 rebuild transcript 7196686 7197057 . + . gene_id "RvY_05796"; transcript_id "RvY_05796.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7196686 7197057 . + . gene_id "RvY_05796"; transcript_id "RvY_05796.1"; Scaffold002 rebuild transcript 7197336 7199277 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; gene_name "NMT"; annotation "Glycylpeptide N-tetradecanoyltransferase 1"; Pfam "[NMT] Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain|[NMT_C] Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain|[Acetyltransf_9] Acetyltransferase (GNAT) domain"; CDD "N-myristoyl transferase [Lipid metabolism]"; EC "EC2.3.1.97"; KO "K00671"; similar_genes "NMT1_HUMAN(e-value:7.0e-65;bit-score:245.0)"; Scaffold002 rebuild exon 7197336 7197494 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7197559 7197825 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7197883 7197954 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7198032 7198140 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7198211 7198384 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7198507 7198715 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7198810 7198937 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild exon 7198998 7199277 . - . gene_id "RvY_05797"; transcript_id "RvY_05797.1"; Scaffold002 rebuild transcript 7199826 7201421 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; gene_name "ATS1"; annotation "hypothetical protein."; Pfam "[RCC1_2] Regulator of chromosome condensation (RCC1) repeat|[RCC1] Regulator of chromosome condensation (RCC1) repeat"; CDD "Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]"; similar_genes "RCCD1_MOUSE(e-value:8.7e-06;bit-score:48.0)"; Scaffold002 rebuild exon 7199826 7200024 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild exon 7200111 7200273 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild exon 7200330 7200427 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild exon 7200490 7200652 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild exon 7200721 7200842 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild exon 7200921 7201139 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild exon 7201225 7201421 . + . gene_id "RvY_05798"; transcript_id "RvY_05798.1"; Scaffold002 rebuild transcript 7203573 7209192 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; gene_name "SOX-TCF_HMG-box"; annotation "hypothetical protein."; Pfam "[DUF1898]|[AXH] Ataxin-1 and HBP1 module (AXH)|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; similar_genes "HBP1_HUMAN(e-value:6.8e-10;bit-score:62.0)"; Scaffold002 rebuild exon 7203573 7203575 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7203961 7204412 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7206789 7207447 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7207732 7207825 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7207882 7208203 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7208505 7208737 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7208801 7209078 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild exon 7209158 7209192 . + . gene_id "RvY_05799"; transcript_id "RvY_05799.1"; Scaffold002 rebuild transcript 7209797 7210363 . + . gene_id "RvY_05800"; transcript_id "RvY_05800.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7209797 7210363 . + . gene_id "RvY_05800"; transcript_id "RvY_05800.1"; Scaffold002 rebuild transcript 7210171 7210575 . + . gene_id "RvY_05800"; transcript_id "RvY_05800.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7210171 7210575 . + . gene_id "RvY_05800"; transcript_id "RvY_05800.2"; Scaffold002 rebuild transcript 7209880 7210398 . - . gene_id "RvY_05801"; transcript_id "RvY_05801.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7209880 7210398 . - . gene_id "RvY_05801"; transcript_id "RvY_05801.1"; Scaffold002 rebuild transcript 7211298 7215309 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; annotation "putative Coronin-1A"; Pfam "[WD40] WD domain, G-beta repeat|[DUF1900]|[DUF1899]"; similar_genes "COR1A_BOVIN(e-value:4.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 7211298 7211492 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7211594 7211710 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7211805 7211888 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7211996 7212058 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7212177 7212262 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7212398 7212437 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7212558 7212596 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7212709 7212832 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7213151 7213461 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7213706 7213831 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7213931 7214127 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7214311 7214400 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7214468 7214560 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7214648 7214966 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild exon 7215037 7215309 . + . gene_id "RvY_05802"; transcript_id "RvY_05802.1"; Scaffold002 rebuild transcript 7216617 7222738 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; gene_name "ZnMc_adamalysin_II_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Pep_M12B_propep] Reprolysin family propeptide|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Disintegrin]|[ADAM_CR] ADAM cysteine-rich|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions."; EC "EC3.4.24.-"; similar_genes "ADA19_HUMAN(e-value:8.0e-13;bit-score:72.0)"; Scaffold002 rebuild exon 7216617 7216713 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7216970 7217291 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7217382 7217497 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7217659 7217708 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7218102 7218281 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7218557 7218726 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7218876 7218960 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7219829 7219959 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7220040 7220260 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7220333 7220511 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7220704 7220999 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7221401 7222136 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild exon 7222364 7222738 . + . gene_id "RvY_05803"; transcript_id "RvY_05803.1"; Scaffold002 rebuild transcript 7223214 7226001 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7223214 7223283 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild exon 7223346 7223667 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild exon 7224006 7224322 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild exon 7224400 7224645 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild exon 7224715 7224790 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild exon 7224868 7225597 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild exon 7225777 7226001 . - . gene_id "RvY_05804"; transcript_id "RvY_05804.1"; Scaffold002 rebuild transcript 7227102 7229443 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; gene_name "CTTN"; annotation "Src substrate cortactin"; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[HS1_rep] Repeat in HS1/Cortactin"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; KO "K06106"; similar_genes "SRC8_HUMAN(e-value:1.6e-68;bit-score:257.0)"; Scaffold002 rebuild exon 7227102 7227185 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7227289 7227362 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7227492 7227618 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7227727 7228222 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7228291 7228401 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7228467 7228595 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7228653 7229165 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7229244 7229300 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild exon 7229364 7229443 . + . gene_id "RvY_05805"; transcript_id "RvY_05805.1"; Scaffold002 rebuild transcript 7230275 7232026 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; gene_name "TASP1"; annotation "taspase, threonine aspartase, 1 [EC:3.4.25.-]"; Pfam "[Asparaginase_2] Asparaginase"; CDD "Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the Scaffold002 rebuild exon 7230275 7230305 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7230471 7230538 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7230635 7230703 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7230827 7230947 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7231015 7231102 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7231198 7231519 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7231584 7231767 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild exon 7231830 7232026 . + . gene_id "RvY_05806"; transcript_id "RvY_05806.1"; Scaffold002 rebuild transcript 7232240 7233292 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "(2,3)[MFS_1] Major Facilitator Superfamily|(2,3)[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 7232240 7232524 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.1"; Scaffold002 rebuild exon 7232595 7232865 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.1"; Scaffold002 rebuild exon 7232932 7233066 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.1"; Scaffold002 rebuild exon 7233134 7233185 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.1"; Scaffold002 rebuild exon 7233274 7233292 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.1"; Scaffold002 rebuild transcript 7233130 7234071 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.2"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "(2,3)[MFS_1] Major Facilitator Superfamily|(2,3)[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 7233130 7233185 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.2"; Scaffold002 rebuild exon 7233274 7233464 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.2"; Scaffold002 rebuild exon 7233519 7233715 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.2"; Scaffold002 rebuild exon 7233777 7233946 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.2"; Scaffold002 rebuild exon 7234011 7234071 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.2"; Scaffold002 rebuild transcript 7233506 7234071 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.3"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "(2,3)[MFS_1] Major Facilitator Superfamily|(2,3)[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 7233506 7233715 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.3"; Scaffold002 rebuild exon 7233777 7233946 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.3"; Scaffold002 rebuild exon 7234011 7234071 . - . gene_id "RvY_05807"; transcript_id "RvY_05807.3"; Scaffold002 rebuild transcript 7234202 7234588 . - . gene_id "RvY_05808"; transcript_id "RvY_05808.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7234202 7234588 . - . gene_id "RvY_05808"; transcript_id "RvY_05808.1"; Scaffold002 rebuild transcript 7234862 7236171 . - . gene_id "RvY_05809"; transcript_id "RvY_05809.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7234862 7235055 . - . gene_id "RvY_05809"; transcript_id "RvY_05809.1"; Scaffold002 rebuild exon 7235252 7235632 . - . gene_id "RvY_05809"; transcript_id "RvY_05809.1"; Scaffold002 rebuild exon 7235697 7236015 . - . gene_id "RvY_05809"; transcript_id "RvY_05809.1"; Scaffold002 rebuild exon 7236079 7236171 . - . gene_id "RvY_05809"; transcript_id "RvY_05809.1"; Scaffold002 rebuild transcript 7236763 7237077 . - . gene_id "RvY_05810"; transcript_id "RvY_05810.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7236763 7237077 . - . gene_id "RvY_05810"; transcript_id "RvY_05810.1"; Scaffold002 rebuild transcript 7237570 7238740 . - . gene_id "RvY_05811"; transcript_id "RvY_05811.1"; gene_name "ATPeAF2"; annotation "ATP synthase mitochondrial F1 complex assembly factor 2"; Pfam "[ATP12] ATP12 chaperone protein"; CDD "Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]"; KO "K07556"; similar_genes "ATPF2_MOUSE(e-value:1.6e-15;bit-score:81.0)"; Scaffold002 rebuild exon 7237570 7237746 . - . gene_id "RvY_05811"; transcript_id "RvY_05811.1"; Scaffold002 rebuild exon 7237822 7237937 . - . gene_id "RvY_05811"; transcript_id "RvY_05811.1"; Scaffold002 rebuild exon 7238074 7238740 . - . gene_id "RvY_05811"; transcript_id "RvY_05811.1"; Scaffold002 rebuild transcript 7239388 7240636 . + . gene_id "RvY_05812"; transcript_id "RvY_05812.1"; annotation "hypothetical protein."; Pfam "[Cullin_binding] Cullin binding"; similar_genes "DCN1L_DROME(e-value:9.5e-18;bit-score:88.0)"; Scaffold002 rebuild exon 7239388 7239428 . + . gene_id "RvY_05812"; transcript_id "RvY_05812.1"; Scaffold002 rebuild exon 7239506 7239829 . + . gene_id "RvY_05812"; transcript_id "RvY_05812.1"; Scaffold002 rebuild exon 7239894 7240030 . + . gene_id "RvY_05812"; transcript_id "RvY_05812.1"; Scaffold002 rebuild exon 7240116 7240231 . + . gene_id "RvY_05812"; transcript_id "RvY_05812.1"; Scaffold002 rebuild exon 7240442 7240636 . + . gene_id "RvY_05812"; transcript_id "RvY_05812.1"; Scaffold002 rebuild transcript 7240882 7242594 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 7240882 7241178 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; Scaffold002 rebuild exon 7241419 7241562 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; Scaffold002 rebuild exon 7241634 7241718 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; Scaffold002 rebuild exon 7241812 7241970 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; Scaffold002 rebuild exon 7242138 7242435 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; Scaffold002 rebuild exon 7242522 7242594 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.1"; Scaffold002 rebuild transcript 7242062 7243173 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 7242062 7242435 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.2"; Scaffold002 rebuild exon 7242522 7242599 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.2"; Scaffold002 rebuild exon 7242705 7243173 . - . gene_id "RvY_05813"; transcript_id "RvY_05813.2"; Scaffold002 rebuild transcript 7244746 7247430 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; gene_name "KIF3_17"; annotation "Kinesin-like protein KIF3A"; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward."; KO "K10394"; similar_genes "KIF3A_MOUSE(e-value:6.7e-78;bit-score:288.0)"; Scaffold002 rebuild exon 7244746 7245066 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild exon 7245135 7245324 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild exon 7245399 7245634 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild exon 7245703 7246168 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild exon 7246232 7246472 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild exon 7246541 7246780 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild exon 7247115 7247430 . - . gene_id "RvY_05814"; transcript_id "RvY_05814.1"; Scaffold002 rebuild transcript 7248247 7249070 . + . gene_id "RvY_05815"; transcript_id "RvY_05815.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7248247 7248307 . + . gene_id "RvY_05815"; transcript_id "RvY_05815.1"; Scaffold002 rebuild exon 7248445 7249070 . + . gene_id "RvY_05815"; transcript_id "RvY_05815.1"; Scaffold002 rebuild transcript 7249888 7252231 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[EB] EB module|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 7249888 7249929 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7250022 7250142 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7250202 7250312 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7250399 7250599 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7250664 7250867 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7250958 7251104 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7251194 7251241 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7251314 7251948 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7252041 7252109 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild exon 7252193 7252231 . + . gene_id "RvY_05816"; transcript_id "RvY_05816.1"; Scaffold002 rebuild transcript 7252305 7253231 . + . gene_id "RvY_05817"; transcript_id "RvY_05817.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 7252305 7252685 . + . gene_id "RvY_05817"; transcript_id "RvY_05817.1"; Scaffold002 rebuild exon 7252882 7253002 . + . gene_id "RvY_05817"; transcript_id "RvY_05817.1"; Scaffold002 rebuild exon 7253059 7253231 . + . gene_id "RvY_05817"; transcript_id "RvY_05817.1"; Scaffold002 rebuild transcript 7253943 7254513 . + . gene_id "RvY_05818"; transcript_id "RvY_05818.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7253943 7254258 . + . gene_id "RvY_05818"; transcript_id "RvY_05818.1"; Scaffold002 rebuild exon 7254503 7254513 . + . gene_id "RvY_05818"; transcript_id "RvY_05818.1"; Scaffold002 rebuild transcript 7254623 7255480 . - . gene_id "RvY_05819"; transcript_id "RvY_05819.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7254623 7254954 . - . gene_id "RvY_05819"; transcript_id "RvY_05819.1"; Scaffold002 rebuild exon 7255204 7255480 . - . gene_id "RvY_05819"; transcript_id "RvY_05819.1"; Scaffold002 rebuild transcript 7255989 7256291 . - . gene_id "RvY_05820"; transcript_id "RvY_05820.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7255989 7256291 . - . gene_id "RvY_05820"; transcript_id "RvY_05820.1"; Scaffold002 rebuild transcript 7257569 7257757 . + . gene_id "RvY_05821"; transcript_id "RvY_05821.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7257569 7257757 . + . gene_id "RvY_05821"; transcript_id "RvY_05821.1"; Scaffold002 rebuild transcript 7258449 7270259 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7258449 7258649 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7258717 7258805 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7258874 7259158 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7259248 7259312 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7259403 7259652 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7259733 7259841 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7260476 7260585 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7260652 7260825 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7261146 7261247 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7261333 7261400 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7265658 7265895 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild exon 7270133 7270259 . - . gene_id "RvY_05822"; transcript_id "RvY_05822.1"; Scaffold002 rebuild transcript 7270783 7270941 . + . gene_id "RvY_05823"; transcript_id "RvY_05823.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7270783 7270941 . + . gene_id "RvY_05823"; transcript_id "RvY_05823.1"; Scaffold002 rebuild transcript 7272172 7273576 . + . gene_id "RvY_05824"; transcript_id "RvY_05824.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7272172 7272282 . + . gene_id "RvY_05824"; transcript_id "RvY_05824.1"; Scaffold002 rebuild exon 7272374 7272655 . + . gene_id "RvY_05824"; transcript_id "RvY_05824.1"; Scaffold002 rebuild exon 7272668 7272960 . + . gene_id "RvY_05824"; transcript_id "RvY_05824.1"; Scaffold002 rebuild exon 7273126 7273310 . + . gene_id "RvY_05824"; transcript_id "RvY_05824.1"; Scaffold002 rebuild exon 7273491 7273576 . + . gene_id "RvY_05824"; transcript_id "RvY_05824.1"; Scaffold002 rebuild transcript 7275368 7276683 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; annotation "putative Probable U3 small nucleolar RNA-associated protein 11"; Pfam "[Utp11] Utp11 protein"; KO "K14769"; similar_genes "UTP11_DROME(e-value:1.6e-34;bit-score:144.0)"; Scaffold002 rebuild exon 7275368 7275427 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild exon 7275557 7275618 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild exon 7275686 7275788 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild exon 7275886 7275999 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild exon 7276092 7276280 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild exon 7276373 7276483 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild exon 7276600 7276683 . + . gene_id "RvY_05825"; transcript_id "RvY_05825.1"; Scaffold002 rebuild transcript 7276783 7279163 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; gene_name "RpsI"; annotation "putative 28S ribosomal protein S9, mitochondrial"; Pfam "[Ribosomal_S9] Ribosomal protein S9/S16"; CDD "Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]"; similar_genes "RT09_BOVIN(e-value:4.5e-26;bit-score:116.0)"; Scaffold002 rebuild exon 7276783 7276795 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7276873 7276951 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7277026 7277195 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7277307 7277409 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7277477 7277519 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7277583 7277708 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7277774 7277849 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7277931 7278013 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7278081 7278160 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7278230 7278260 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7278325 7278387 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7278503 7278606 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7278697 7278756 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7278847 7278985 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild exon 7279065 7279163 . - . gene_id "RvY_05826"; transcript_id "RvY_05826.1"; Scaffold002 rebuild transcript 7279667 7280460 . + . gene_id "RvY_05827"; transcript_id "RvY_05827.1"; gene_name "Mesd"; annotation "putative LDLR chaperone MESD"; Pfam "[Mesd] Chaperone for wingless signalling and trafficking of LDL receptor"; CDD "Chaperone for wingless signalling and trafficking of LDL receptor. Mesd is a family of highly conserved proteins found from nematodes to humans. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs). The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation)."; similar_genes "MESD_CHICK(e-value:7.4e-37;bit-score:152.0)"; Scaffold002 rebuild exon 7279667 7279837 . + . gene_id "RvY_05827"; transcript_id "RvY_05827.1"; Scaffold002 rebuild exon 7279970 7280205 . + . gene_id "RvY_05827"; transcript_id "RvY_05827.1"; Scaffold002 rebuild exon 7280277 7280460 . + . gene_id "RvY_05827"; transcript_id "RvY_05827.1"; Scaffold002 rebuild transcript 7280999 7282442 . - . gene_id "RvY_05828"; transcript_id "RvY_05828.1"; gene_name "Phd_like_Phd"; annotation "hypothetical protein."; Pfam "[Phosducin]"; CDD "Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain."; Scaffold002 rebuild exon 7280999 7281086 . - . gene_id "RvY_05828"; transcript_id "RvY_05828.1"; Scaffold002 rebuild exon 7281280 7281425 . - . gene_id "RvY_05828"; transcript_id "RvY_05828.1"; Scaffold002 rebuild exon 7281514 7281852 . - . gene_id "RvY_05828"; transcript_id "RvY_05828.1"; Scaffold002 rebuild exon 7282012 7282137 . - . gene_id "RvY_05828"; transcript_id "RvY_05828.1"; Scaffold002 rebuild exon 7282248 7282442 . - . gene_id "RvY_05828"; transcript_id "RvY_05828.1"; Scaffold002 rebuild transcript 7283166 7284981 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; gene_name "COG2220"; annotation "putative N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D"; Pfam "[Lactamase_B_3] Beta-lactamase superfamily domain|[Lactamase_B_2] Beta-lactamase superfamily domain"; CDD "Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]"; EC "EC3.1.4.-"; KO "K13985"; similar_genes "NAPEP_BOVIN(e-value:4.6e-45;bit-score:179.0)"; Scaffold002 rebuild exon 7283166 7283270 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7283340 7283461 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7283536 7283708 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7283774 7284040 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7284171 7284206 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7284301 7284344 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7284410 7284432 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7284519 7284606 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7284686 7284918 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild exon 7284981 7284981 . - . gene_id "RvY_05829"; transcript_id "RvY_05829.1"; Scaffold002 rebuild transcript 7285794 7286189 . + . gene_id "RvY_05830"; transcript_id "RvY_05830.1"; annotation "hypothetical protein."; Pfam "[ubiquitin] Ubiquitin family"; Scaffold002 rebuild exon 7285794 7285856 . + . gene_id "RvY_05830"; transcript_id "RvY_05830.1"; Scaffold002 rebuild exon 7285944 7286189 . + . gene_id "RvY_05830"; transcript_id "RvY_05830.1"; Scaffold002 rebuild transcript 7286246 7286695 . + . gene_id "RvY_05831"; transcript_id "RvY_05831.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7286246 7286695 . + . gene_id "RvY_05831"; transcript_id "RvY_05831.1"; Scaffold002 rebuild transcript 7287160 7288155 . + . gene_id "RvY_05832"; transcript_id "RvY_05832.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7287160 7287314 . + . gene_id "RvY_05832"; transcript_id "RvY_05832.1"; Scaffold002 rebuild exon 7287572 7287680 . + . gene_id "RvY_05832"; transcript_id "RvY_05832.1"; Scaffold002 rebuild exon 7287753 7287890 . + . gene_id "RvY_05832"; transcript_id "RvY_05832.1"; Scaffold002 rebuild exon 7288027 7288155 . + . gene_id "RvY_05832"; transcript_id "RvY_05832.1"; Scaffold002 rebuild transcript 7288258 7293222 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; gene_name "GRIN2B"; annotation "glutamate receptor, ionotropic, N-methyl-D-aspartate 2B"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05210"; Scaffold002 rebuild exon 7288258 7288430 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7288494 7288598 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7288822 7288942 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7289051 7289131 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7289366 7289423 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7289559 7289736 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7289886 7290030 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7290433 7290583 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7290701 7290761 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7290849 7290987 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7291059 7291179 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7291251 7291313 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7291393 7291466 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7291549 7291600 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7291676 7291795 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7291938 7292202 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7292269 7292450 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild exon 7292645 7293222 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.1"; Scaffold002 rebuild transcript 7288282 7293222 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; gene_name "GRIN2B"; annotation "glutamate receptor, ionotropic, N-methyl-D-aspartate 2B"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05210"; Scaffold002 rebuild exon 7288282 7288430 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7288494 7288598 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7288822 7288942 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7289051 7289131 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7289366 7289423 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7289559 7289736 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7289886 7290030 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7290433 7290583 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7290701 7290761 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7290849 7290987 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7291059 7291179 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7291251 7291313 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7291393 7291466 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7291549 7291600 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7291676 7291795 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7291938 7292202 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7292269 7292450 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild exon 7292645 7293222 . + . gene_id "RvY_05833"; transcript_id "RvY_05833.2"; Scaffold002 rebuild transcript 7293592 7296447 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7293592 7293904 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild exon 7294071 7294257 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild exon 7294321 7294410 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild exon 7296030 7296112 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild exon 7296198 7296274 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild exon 7296338 7296359 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild exon 7296434 7296447 . - . gene_id "RvY_05834"; transcript_id "RvY_05834.1"; Scaffold002 rebuild transcript 7297493 7300269 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7297493 7297546 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7297626 7297936 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7298011 7298146 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7298232 7298348 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7298406 7298590 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7298663 7298789 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7298846 7298968 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7299030 7299196 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7299274 7299415 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7299479 7299607 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7299709 7299869 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7299953 7299991 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7300077 7300148 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild exon 7300221 7300269 . - . gene_id "RvY_05835"; transcript_id "RvY_05835.1"; Scaffold002 rebuild transcript 7301862 7304650 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; gene_name "SAS2"; annotation "hypothetical protein."; Pfam "[zf-C2HC] Zinc finger, C2HC type|[MOZ_SAS] MOZ/SAS family|[PHD] PHD-finger"; CDD "Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]"; Scaffold002 rebuild exon 7301862 7301984 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7302069 7302346 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7302601 7302835 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7302918 7303113 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7303184 7303260 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7303339 7303503 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7303567 7303724 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7303833 7304090 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7304182 7304266 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7304329 7304435 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild exon 7304524 7304650 . - . gene_id "RvY_05836"; transcript_id "RvY_05836.1"; Scaffold002 rebuild transcript 7306074 7307897 . + . gene_id "RvY_05837"; transcript_id "RvY_05837.1"; gene_name "THOC3"; annotation "THO complex subunit 3"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K12880"; Scaffold002 rebuild exon 7306074 7306103 . + . gene_id "RvY_05837"; transcript_id "RvY_05837.1"; Scaffold002 rebuild exon 7306195 7306286 . + . gene_id "RvY_05837"; transcript_id "RvY_05837.1"; Scaffold002 rebuild exon 7306389 7306760 . + . gene_id "RvY_05837"; transcript_id "RvY_05837.1"; Scaffold002 rebuild exon 7306820 7307507 . + . gene_id "RvY_05837"; transcript_id "RvY_05837.1"; Scaffold002 rebuild exon 7307565 7307897 . + . gene_id "RvY_05837"; transcript_id "RvY_05837.1"; Scaffold002 rebuild transcript 7309560 7310262 . + . gene_id "RvY_05838"; transcript_id "RvY_05838.1"; gene_name "PPIL1"; annotation "Peptidyl-prolyl cis-trans isomerase-like 1"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD"; CDD "cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase Scaffold002 rebuild exon 7309560 7309730 . + . gene_id "RvY_05838"; transcript_id "RvY_05838.1"; Scaffold002 rebuild exon 7309817 7309847 . + . gene_id "RvY_05838"; transcript_id "RvY_05838.1"; Scaffold002 rebuild exon 7309955 7310262 . + . gene_id "RvY_05838"; transcript_id "RvY_05838.1"; Scaffold002 rebuild transcript 7310390 7311009 . - . gene_id "RvY_05839"; transcript_id "RvY_05839.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7310390 7310527 . - . gene_id "RvY_05839"; transcript_id "RvY_05839.1"; Scaffold002 rebuild exon 7310599 7310847 . - . gene_id "RvY_05839"; transcript_id "RvY_05839.1"; Scaffold002 rebuild exon 7310914 7311009 . - . gene_id "RvY_05839"; transcript_id "RvY_05839.1"; Scaffold002 rebuild transcript 7311798 7312199 . - . gene_id "RvY_05840"; transcript_id "RvY_05840.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7311798 7312199 . - . gene_id "RvY_05840"; transcript_id "RvY_05840.1"; Scaffold002 rebuild transcript 7312967 7313758 . - . gene_id "RvY_05841"; transcript_id "RvY_05841.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7312967 7313758 . - . gene_id "RvY_05841"; transcript_id "RvY_05841.1"; Scaffold002 rebuild transcript 7314339 7315064 . - . gene_id "RvY_05842"; transcript_id "RvY_05842.1"; gene_name "TBC"; annotation "hypothetical protein."; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "Y1727_DROME(e-value:1.0e-12;bit-score:71.0)"; Scaffold002 rebuild exon 7314339 7315064 . - . gene_id "RvY_05842"; transcript_id "RvY_05842.1"; Scaffold002 rebuild transcript 7315654 7316580 . - . gene_id "RvY_05843"; transcript_id "RvY_05843.1"; gene_name "GAPCenA"; annotation "hypothetical protein."; CDD "GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; Scaffold002 rebuild exon 7315654 7316580 . - . gene_id "RvY_05843"; transcript_id "RvY_05843.1"; Scaffold002 rebuild transcript 7317856 7318182 . + . gene_id "RvY_05844"; transcript_id "RvY_05844.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7317856 7318182 . + . gene_id "RvY_05844"; transcript_id "RvY_05844.1"; Scaffold002 rebuild transcript 7318920 7319399 . + . gene_id "RvY_05845"; transcript_id "RvY_05845.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7318920 7319030 . + . gene_id "RvY_05845"; transcript_id "RvY_05845.1"; Scaffold002 rebuild exon 7319200 7319329 . + . gene_id "RvY_05845"; transcript_id "RvY_05845.1"; Scaffold002 rebuild exon 7319353 7319399 . + . gene_id "RvY_05845"; transcript_id "RvY_05845.1"; Scaffold002 rebuild transcript 7319789 7321915 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7319789 7319883 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7319964 7320054 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7320129 7320289 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7320484 7320607 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7320672 7320952 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7321013 7321130 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7321238 7321360 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7321439 7321602 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7321668 7321805 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild exon 7321882 7321915 . - . gene_id "RvY_05846"; transcript_id "RvY_05846.1"; Scaffold002 rebuild transcript 7322121 7323440 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; gene_name "FRA10AC1"; annotation "putative Protein FRA10AC1"; Pfam "[Fra10Ac1] Folate-sensitive fragile site protein Fra10Ac1"; KO "K13121"; similar_genes "F10C1_HUMAN(e-value:7.1e-50;bit-score:195.0)"; Scaffold002 rebuild exon 7322121 7322404 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; Scaffold002 rebuild exon 7322473 7322586 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; Scaffold002 rebuild exon 7322671 7322885 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; Scaffold002 rebuild exon 7322963 7323085 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; Scaffold002 rebuild exon 7323171 7323287 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; Scaffold002 rebuild exon 7323388 7323440 . - . gene_id "RvY_05847"; transcript_id "RvY_05847.1"; Scaffold002 rebuild transcript 7324071 7328056 . - . gene_id "RvY_05848"; transcript_id "RvY_05848.1"; gene_name "RPC2"; annotation "putative DNA-directed RNA polymerase III subunit RPC2"; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|[RNA_pol_Rpb2_4] RNA polymerase Rpb2, domain 4|[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "DNA-directed RNA polymerase subunit beta; Provisional"; EC "EC2.7.7.6"; KO "K03021"; similar_genes "RPC2_SCHPO(e-value:1.5e-43;bit-score:174.0)"; Scaffold002 rebuild exon 7324071 7324792 . - . gene_id "RvY_05848"; transcript_id "RvY_05848.1"; Scaffold002 rebuild exon 7325002 7325969 . - . gene_id "RvY_05848"; transcript_id "RvY_05848.1"; Scaffold002 rebuild exon 7326048 7326553 . - . gene_id "RvY_05848"; transcript_id "RvY_05848.1"; Scaffold002 rebuild exon 7326652 7327293 . - . gene_id "RvY_05848"; transcript_id "RvY_05848.1"; Scaffold002 rebuild exon 7327490 7328056 . - . gene_id "RvY_05848"; transcript_id "RvY_05848.1"; Scaffold002 rebuild transcript 7328582 7330297 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; gene_name "Rnc"; annotation "hypothetical protein."; CDD "dsRNA-specific ribonuclease [Transcription]"; Scaffold002 rebuild exon 7328582 7328672 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild exon 7328779 7328941 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild exon 7329046 7329239 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild exon 7329332 7329407 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild exon 7329474 7329558 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild exon 7329639 7329942 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild exon 7330017 7330297 . + . gene_id "RvY_05849"; transcript_id "RvY_05849.1"; Scaffold002 rebuild transcript 7330710 7332951 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; annotation "hypothetical protein."; Pfam "[PHO4] Phosphate transporter family"; KO "K14640"; similar_genes "S20A2_XENLA(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 7330710 7330947 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; Scaffold002 rebuild exon 7331018 7331139 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; Scaffold002 rebuild exon 7331211 7332304 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; Scaffold002 rebuild exon 7332375 7332548 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; Scaffold002 rebuild exon 7332640 7332727 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; Scaffold002 rebuild exon 7332805 7332951 . - . gene_id "RvY_05850"; transcript_id "RvY_05850.1"; Scaffold002 rebuild transcript 7333071 7333289 . - . gene_id "RvY_05851"; transcript_id "RvY_05851.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7333071 7333289 . - . gene_id "RvY_05851"; transcript_id "RvY_05851.1"; Scaffold002 rebuild transcript 7333704 7338527 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; similar_genes "BRWD2_HUMAN(e-value:8.8e-08;bit-score:55.0)"; Scaffold002 rebuild exon 7333704 7333873 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7334114 7334568 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7334639 7334808 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7334878 7335194 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7335278 7335443 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7335516 7335890 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7336136 7336467 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7336539 7337387 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7337669 7338002 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7338066 7338177 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild exon 7338241 7338527 . - . gene_id "RvY_05852"; transcript_id "RvY_05852.1"; Scaffold002 rebuild transcript 7339003 7346032 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; gene_name "COG5307"; annotation "putative Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1"; Pfam "[Sec7_N] Guanine nucleotide exchange factor in Golgi transport N-terminal|[Sec7]"; CDD "SEC7 domain proteins [General function prediction only]"; similar_genes "GBF1_HUMAN(e-value:1.6e-30;bit-score:130.0)"; Scaffold002 rebuild exon 7339003 7339089 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7339153 7339512 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7339593 7339709 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7339770 7339871 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7339937 7340173 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7340239 7340706 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7340928 7341290 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7341498 7342162 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7342418 7343085 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7343178 7343380 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7343455 7343634 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7343697 7343990 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7344064 7344196 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7344274 7344358 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7344435 7344879 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7344962 7345074 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7345156 7345264 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7345346 7345467 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7345552 7345683 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7345742 7345805 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild exon 7345880 7346032 . - . gene_id "RvY_05853"; transcript_id "RvY_05853.1"; Scaffold002 rebuild transcript 7345325 7345489 . + . gene_id "RvY_05854"; transcript_id "RvY_05854.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7345325 7345489 . + . gene_id "RvY_05854"; transcript_id "RvY_05854.1"; Scaffold002 rebuild transcript 7347835 7350312 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 7347835 7347901 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; Scaffold002 rebuild exon 7348168 7348356 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; Scaffold002 rebuild exon 7348777 7349069 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; Scaffold002 rebuild exon 7349187 7349278 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; Scaffold002 rebuild exon 7349395 7349669 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; Scaffold002 rebuild exon 7349786 7350312 . + . gene_id "RvY_05855"; transcript_id "RvY_05855.1"; Scaffold002 rebuild transcript 7350596 7355277 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold002 rebuild exon 7350596 7350786 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7350848 7351000 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7351065 7351179 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7351239 7352005 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7352084 7352646 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7352713 7352804 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7352869 7353744 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7353917 7354080 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7354168 7354301 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild exon 7355186 7355277 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.1"; Scaffold002 rebuild transcript 7352022 7356638 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold002 rebuild exon 7352022 7352646 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7352713 7352804 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7352869 7353744 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7353917 7354080 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7354168 7354301 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7355186 7355375 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7355442 7355525 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7355582 7355911 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7356161 7356449 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild exon 7356540 7356638 . - . gene_id "RvY_05856"; transcript_id "RvY_05856.2"; Scaffold002 rebuild transcript 7358176 7359890 . - . gene_id "RvY_05857"; transcript_id "RvY_05857.1"; annotation "hypothetical protein."; Pfam "[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold002 rebuild exon 7358176 7358651 . - . gene_id "RvY_05857"; transcript_id "RvY_05857.1"; Scaffold002 rebuild exon 7358894 7359253 . - . gene_id "RvY_05857"; transcript_id "RvY_05857.1"; Scaffold002 rebuild exon 7359328 7359513 . - . gene_id "RvY_05857"; transcript_id "RvY_05857.1"; Scaffold002 rebuild exon 7359596 7359890 . - . gene_id "RvY_05857"; transcript_id "RvY_05857.1"; Scaffold002 rebuild transcript 7362943 7366485 . + . gene_id "RvY_05858"; transcript_id "RvY_05858.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7362943 7363338 . + . gene_id "RvY_05858"; transcript_id "RvY_05858.1"; Scaffold002 rebuild exon 7363479 7363580 . + . gene_id "RvY_05858"; transcript_id "RvY_05858.1"; Scaffold002 rebuild exon 7364057 7365404 . + . gene_id "RvY_05858"; transcript_id "RvY_05858.1"; Scaffold002 rebuild exon 7365501 7365783 . + . gene_id "RvY_05858"; transcript_id "RvY_05858.1"; Scaffold002 rebuild exon 7365870 7366485 . + . gene_id "RvY_05858"; transcript_id "RvY_05858.1"; Scaffold002 rebuild transcript 7366779 7367440 . - . gene_id "RvY_05859"; transcript_id "RvY_05859.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7366779 7367254 . - . gene_id "RvY_05859"; transcript_id "RvY_05859.1"; Scaffold002 rebuild exon 7367332 7367440 . - . gene_id "RvY_05859"; transcript_id "RvY_05859.1"; Scaffold002 rebuild transcript 7367604 7369589 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[Membr_traf_MHD] Munc13 (mammalian uncoordinated) homology domain|[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; KO "K15621"; Scaffold002 rebuild exon 7367604 7367698 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7367795 7367997 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7368076 7368199 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7368282 7368320 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7368385 7368550 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7368626 7368739 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7368799 7369011 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7369067 7369291 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7369382 7369480 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild exon 7369566 7369589 . - . gene_id "RvY_05860"; transcript_id "RvY_05860.1"; Scaffold002 rebuild transcript 7369786 7372885 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; annotation "hypothetical protein."; Pfam "[C2]"; KO "K15621"; Scaffold002 rebuild exon 7369786 7369800 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7369890 7370013 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7370087 7370250 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7370370 7370457 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7370524 7370624 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7370727 7370783 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7370861 7370923 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7371005 7371337 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7371403 7371511 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7371626 7371759 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7371858 7371945 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7372370 7372425 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7372504 7372570 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild exon 7372641 7372885 . - . gene_id "RvY_05861"; transcript_id "RvY_05861.1"; Scaffold002 rebuild transcript 7377941 7385970 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; gene_name "POLQ"; annotation "DNA polymerase theta subunit [EC:2.7.7.7]"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[DNA_pol_A] DNA polymerase family A"; CDD "DNA polymerase family A, 5'-3' polymerase domain. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified into six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class X), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerases are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I, mitochondrial polymerase gamma, and several bacteriophage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol I has two functional domains located on the same polypeptide; a 5'-3' polymerase and a 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and the DNA polymerase activity to fill in the resulting gap. The structure of these polymerases resemble in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains."; EC "EC2.7.7.7"; KO "K02349"; similar_genes "DPOLQ_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold002 rebuild exon 7377941 7378525 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7378803 7378990 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7379073 7379560 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7379802 7380184 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7380414 7380764 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7381002 7381599 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7381743 7382486 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7382665 7382908 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7382987 7383102 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7383189 7383625 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7383715 7383938 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7384007 7384591 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7384818 7385496 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild exon 7385566 7385970 . - . gene_id "RvY_05862"; transcript_id "RvY_05862.1"; Scaffold002 rebuild transcript 7386440 7386673 . + . gene_id "RvY_05863"; transcript_id "RvY_05863.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7386440 7386673 . + . gene_id "RvY_05863"; transcript_id "RvY_05863.1"; Scaffold002 rebuild transcript 7386692 7386856 . + . gene_id "RvY_05864"; transcript_id "RvY_05864.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7386692 7386856 . + . gene_id "RvY_05864"; transcript_id "RvY_05864.1"; Scaffold002 rebuild transcript 7388574 7390073 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; gene_name "LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold002 rebuild exon 7388574 7389105 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; Scaffold002 rebuild exon 7389184 7389260 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; Scaffold002 rebuild exon 7389359 7389418 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; Scaffold002 rebuild exon 7389485 7389786 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; Scaffold002 rebuild exon 7389848 7389941 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; Scaffold002 rebuild exon 7390008 7390073 . + . gene_id "RvY_05865"; transcript_id "RvY_05865.1"; Scaffold002 rebuild transcript 7390291 7393278 . - . gene_id "RvY_05866"; transcript_id "RvY_05866.1"; gene_name "EF-G"; annotation "Elongation factor G, mitochondrial"; Pfam "[EFG_C] Elongation factor G C-terminus|[EFG_IV] Elongation factor G, domain IV|[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "elongation factor G; Reviewed"; EC "EC3.6.5.3"; KO "K02355"; similar_genes "EFGM_DROWI(e-value:2.2e-89;bit-score:326.0)"; Scaffold002 rebuild exon 7390291 7390620 . - . gene_id "RvY_05866"; transcript_id "RvY_05866.1"; Scaffold002 rebuild exon 7390864 7391312 . - . gene_id "RvY_05866"; transcript_id "RvY_05866.1"; Scaffold002 rebuild exon 7391561 7392148 . - . gene_id "RvY_05866"; transcript_id "RvY_05866.1"; Scaffold002 rebuild exon 7392310 7392864 . - . gene_id "RvY_05866"; transcript_id "RvY_05866.1"; Scaffold002 rebuild exon 7392927 7393278 . - . gene_id "RvY_05866"; transcript_id "RvY_05866.1"; Scaffold002 rebuild transcript 7393701 7393985 . - . gene_id "RvY_05867"; transcript_id "RvY_05867.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7393701 7393985 . - . gene_id "RvY_05867"; transcript_id "RvY_05867.1"; Scaffold002 rebuild transcript 7394120 7394644 . + . gene_id "RvY_05868"; transcript_id "RvY_05868.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7394120 7394644 . + . gene_id "RvY_05868"; transcript_id "RvY_05868.1"; Scaffold002 rebuild transcript 7394908 7395183 . + . gene_id "RvY_05869"; transcript_id "RvY_05869.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7394908 7395183 . + . gene_id "RvY_05869"; transcript_id "RvY_05869.1"; Scaffold002 rebuild transcript 7395332 7396121 . + . gene_id "RvY_05870"; transcript_id "RvY_05870.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7395332 7395824 . + . gene_id "RvY_05870"; transcript_id "RvY_05870.1"; Scaffold002 rebuild exon 7395952 7396121 . + . gene_id "RvY_05870"; transcript_id "RvY_05870.1"; Scaffold002 rebuild transcript 7396187 7397734 . - . gene_id "RvY_05871"; transcript_id "RvY_05871.1"; gene_name "DSRM"; annotation "hypothetical protein."; Pfam "[dsrm] Double-stranded RNA binding motif"; CDD "Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases."; Scaffold002 rebuild exon 7396187 7397052 . - . gene_id "RvY_05871"; transcript_id "RvY_05871.1"; Scaffold002 rebuild exon 7397236 7397734 . - . gene_id "RvY_05871"; transcript_id "RvY_05871.1"; Scaffold002 rebuild transcript 7398602 7399722 . - . gene_id "RvY_05872"; transcript_id "RvY_05872.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7398602 7398811 . - . gene_id "RvY_05872"; transcript_id "RvY_05872.1"; Scaffold002 rebuild exon 7399468 7399722 . - . gene_id "RvY_05872"; transcript_id "RvY_05872.1"; Scaffold002 rebuild transcript 7400116 7402770 . - . gene_id "RvY_05873"; transcript_id "RvY_05873.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7400116 7400288 . - . gene_id "RvY_05873"; transcript_id "RvY_05873.1"; Scaffold002 rebuild exon 7401636 7401780 . - . gene_id "RvY_05873"; transcript_id "RvY_05873.1"; Scaffold002 rebuild exon 7402435 7402770 . - . gene_id "RvY_05873"; transcript_id "RvY_05873.1"; Scaffold002 rebuild transcript 7403382 7405154 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7403382 7403632 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; Scaffold002 rebuild exon 7403773 7403920 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; Scaffold002 rebuild exon 7404006 7404109 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; Scaffold002 rebuild exon 7404195 7404646 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; Scaffold002 rebuild exon 7404859 7405011 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; Scaffold002 rebuild exon 7405108 7405154 . + . gene_id "RvY_05874"; transcript_id "RvY_05874.1"; Scaffold002 rebuild transcript 7406017 7406641 . + . gene_id "RvY_05875"; transcript_id "RvY_05875.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7406017 7406134 . + . gene_id "RvY_05875"; transcript_id "RvY_05875.1"; Scaffold002 rebuild exon 7406206 7406383 . + . gene_id "RvY_05875"; transcript_id "RvY_05875.1"; Scaffold002 rebuild exon 7406497 7406641 . + . gene_id "RvY_05875"; transcript_id "RvY_05875.1"; Scaffold002 rebuild transcript 7406672 7407254 . + . gene_id "RvY_05876"; transcript_id "RvY_05876.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7406672 7406939 . + . gene_id "RvY_05876"; transcript_id "RvY_05876.1"; Scaffold002 rebuild exon 7406968 7407254 . + . gene_id "RvY_05876"; transcript_id "RvY_05876.1"; Scaffold002 rebuild transcript 7408078 7409839 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; gene_name "DNAJA1"; annotation "DnaJ homolog subfamily A member 4"; Pfam "[DnaJ_CXXCXGXG] DnaJ central domain|[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "DnaJ_C chaperone protein; Provisional"; KO "K09502"; similar_genes "DNJA4_HUMAN(e-value:1.2e-66;bit-score:250.0)"; Scaffold002 rebuild exon 7408078 7408424 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; Scaffold002 rebuild exon 7408650 7408880 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; Scaffold002 rebuild exon 7408958 7409188 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; Scaffold002 rebuild exon 7409265 7409441 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; Scaffold002 rebuild exon 7409519 7409624 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; Scaffold002 rebuild exon 7409708 7409839 . - . gene_id "RvY_05877"; transcript_id "RvY_05877.1"; Scaffold002 rebuild transcript 7410602 7414087 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; annotation "putative Ribosome biogenesis protein BOP1"; Pfam "[WD40] WD domain, G-beta repeat|[BOP1NT] BOP1NT (NUC169) domain"; KO "K14824"; similar_genes "BOP1_RAT(e-value:2.3e-42;bit-score:170.0)"; Scaffold002 rebuild exon 7410602 7410761 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7410818 7411350 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7411546 7411723 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7411818 7411950 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7412161 7412230 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7412311 7412676 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7412796 7413138 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7413199 7413440 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7413598 7413891 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild exon 7413986 7414087 . - . gene_id "RvY_05878"; transcript_id "RvY_05878.1"; Scaffold002 rebuild transcript 7414598 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7414598 7414686 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.1"; Scaffold002 rebuild exon 7414771 7415069 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.1"; Scaffold002 rebuild exon 7415182 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.1"; Scaffold002 rebuild transcript 7414703 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7414703 7415069 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.2"; Scaffold002 rebuild exon 7415182 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.2"; Scaffold002 rebuild transcript 7414657 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7414657 7414686 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.3"; Scaffold002 rebuild exon 7414775 7415069 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.3"; Scaffold002 rebuild exon 7415182 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.3"; Scaffold002 rebuild transcript 7414683 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.4"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7414683 7414686 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.4"; Scaffold002 rebuild exon 7414785 7415069 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.4"; Scaffold002 rebuild exon 7415182 7415264 . - . gene_id "RvY_05879"; transcript_id "RvY_05879.4"; Scaffold002 rebuild transcript 7415734 7416324 . + . gene_id "RvY_05880"; transcript_id "RvY_05880.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 7415734 7416324 . + . gene_id "RvY_05880"; transcript_id "RvY_05880.1"; Scaffold002 rebuild transcript 7417653 7417838 . - . gene_id "RvY_05881"; transcript_id "RvY_05881.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7417653 7417838 . - . gene_id "RvY_05881"; transcript_id "RvY_05881.1"; Scaffold002 rebuild transcript 7418375 7418482 . - . gene_id "RvY_05882"; transcript_id "RvY_05882.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7418375 7418482 . - . gene_id "RvY_05882"; transcript_id "RvY_05882.1"; Scaffold002 rebuild transcript 7418760 7425413 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[CUB]|[Ig_3] Immunoglobulin domain"; Scaffold002 rebuild exon 7418760 7418944 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7419148 7419332 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7419426 7419617 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7419680 7420100 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7420309 7420781 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7420843 7421122 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7421286 7421908 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7422203 7422532 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7422802 7423200 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7423635 7423952 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7424665 7424926 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild exon 7425161 7425413 . - . gene_id "RvY_05883"; transcript_id "RvY_05883.1"; Scaffold002 rebuild transcript 7427213 7428085 . - . gene_id "RvY_05884"; transcript_id "RvY_05884.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7427213 7428085 . - . gene_id "RvY_05884"; transcript_id "RvY_05884.1"; Scaffold002 rebuild transcript 7429380 7434076 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; gene_name "RRM1"; annotation "Ribonucleoside-diphosphate reductase large subunit"; Pfam "[ATP-cone] ATP cone domain|[Ribonuc_red_lgN] Ribonucleotide reductase, all-alpha domain|[Ribonuc_red_lgC] Ribonucleotide reductase, barrel domain"; EC "EC1.17.4.1"; KO "K10807"; similar_genes "RIR1_MOUSE(e-value:0.0e+00;bit-score:1197.0)"; Scaffold002 rebuild exon 7429380 7429472 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7429554 7429667 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7429918 7430106 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7430426 7430734 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7430799 7430864 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7430942 7431097 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7431163 7431312 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7431390 7431591 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7431656 7431897 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7431987 7432070 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7432132 7432273 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7432467 7432669 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7432897 7432956 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7433027 7433127 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7433216 7433393 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7433668 7433756 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild exon 7433938 7434076 . - . gene_id "RvY_05885"; transcript_id "RvY_05885.1"; Scaffold002 rebuild transcript 7434528 7435316 . + . gene_id "RvY_05886"; transcript_id "RvY_05886.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7434528 7434856 . + . gene_id "RvY_05886"; transcript_id "RvY_05886.1"; Scaffold002 rebuild exon 7434934 7435076 . + . gene_id "RvY_05886"; transcript_id "RvY_05886.1"; Scaffold002 rebuild exon 7435216 7435316 . + . gene_id "RvY_05886"; transcript_id "RvY_05886.1"; Scaffold002 rebuild transcript 7437230 7438440 . - . gene_id "RvY_05887"; transcript_id "RvY_05887.1"; annotation "hypothetical protein."; Pfam "[zf-LYAR] LYAR-type C2HC zinc finger"; KO "K15263"; Scaffold002 rebuild exon 7437230 7437376 . - . gene_id "RvY_05887"; transcript_id "RvY_05887.1"; Scaffold002 rebuild exon 7437484 7437897 . - . gene_id "RvY_05887"; transcript_id "RvY_05887.1"; Scaffold002 rebuild exon 7437997 7438201 . - . gene_id "RvY_05887"; transcript_id "RvY_05887.1"; Scaffold002 rebuild exon 7438289 7438440 . - . gene_id "RvY_05887"; transcript_id "RvY_05887.1"; Scaffold002 rebuild transcript 7438767 7440725 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; annotation "putative Probable cytosolic Fe-S cluster assembly factor CPIJ010948"; Pfam "[Fe_hyd_lg_C] Iron only hydrogenase large subunit, C-terminal domain"; similar_genes "NARF_CULQU(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 7438767 7438829 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild exon 7438930 7439169 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild exon 7439241 7439499 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild exon 7439576 7439824 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild exon 7439921 7440122 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild exon 7440226 7440383 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild exon 7440484 7440725 . + . gene_id "RvY_05888"; transcript_id "RvY_05888.1"; Scaffold002 rebuild transcript 7441214 7441796 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7441214 7441233 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.1"; Scaffold002 rebuild exon 7441312 7441388 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.1"; Scaffold002 rebuild exon 7441475 7441533 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.1"; Scaffold002 rebuild exon 7441599 7441796 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.1"; Scaffold002 rebuild transcript 7441214 7441796 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7441214 7441233 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.2"; Scaffold002 rebuild exon 7441312 7441388 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.2"; Scaffold002 rebuild exon 7441475 7441533 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.2"; Scaffold002 rebuild exon 7441611 7441796 . - . gene_id "RvY_05889"; transcript_id "RvY_05889.2"; Scaffold002 rebuild transcript 7442555 7446015 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 7442555 7442890 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; Scaffold002 rebuild exon 7443091 7443697 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; Scaffold002 rebuild exon 7443927 7444273 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; Scaffold002 rebuild exon 7444342 7444777 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; Scaffold002 rebuild exon 7445101 7445456 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; Scaffold002 rebuild exon 7445725 7446015 . + . gene_id "RvY_05890"; transcript_id "RvY_05890.1"; Scaffold002 rebuild transcript 7446020 7446328 . + . gene_id "RvY_05891"; transcript_id "RvY_05891.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7446020 7446328 . + . gene_id "RvY_05891"; transcript_id "RvY_05891.1"; Scaffold002 rebuild transcript 7446640 7447665 . + . gene_id "RvY_05892"; transcript_id "RvY_05892.1"; gene_name "COG3885"; annotation "hypothetical protein."; Pfam "[LigB] Catalytic LigB subunit of aromatic ring-opening dioxygenase"; CDD "Uncharacterized conserved protein [Function unknown]"; Scaffold002 rebuild exon 7446640 7447665 . + . gene_id "RvY_05892"; transcript_id "RvY_05892.1"; Scaffold002 rebuild transcript 7448028 7449983 . - . gene_id "RvY_05893"; transcript_id "RvY_05893.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7448028 7448899 . - . gene_id "RvY_05893"; transcript_id "RvY_05893.1"; Scaffold002 rebuild exon 7449166 7449213 . - . gene_id "RvY_05893"; transcript_id "RvY_05893.1"; Scaffold002 rebuild exon 7449278 7449983 . - . gene_id "RvY_05893"; transcript_id "RvY_05893.1"; Scaffold002 rebuild transcript 7450645 7451042 . + . gene_id "RvY_05894"; transcript_id "RvY_05894.1"; gene_name "UBL5"; annotation "putative Ubiquitin-like protein 5"; Pfam "[ubiquitin] Ubiquitin family"; CDD "UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members."; KO "K13113"; similar_genes "UBL5_BOVIN(e-value:9.3e-33;bit-score:138.0)"; Scaffold002 rebuild exon 7450645 7450700 . + . gene_id "RvY_05894"; transcript_id "RvY_05894.1"; Scaffold002 rebuild exon 7450782 7450903 . + . gene_id "RvY_05894"; transcript_id "RvY_05894.1"; Scaffold002 rebuild exon 7450999 7451042 . + . gene_id "RvY_05894"; transcript_id "RvY_05894.1"; Scaffold002 rebuild transcript 7451264 7451752 . + . gene_id "RvY_05895"; transcript_id "RvY_05895.1"; gene_name "(1)PRK10150"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_2_N] Glycosyl hydrolases family 2, sugar binding domain"; CDD "(1)beta-D-glucuronidase; Provisional"; EC "(1)EC3.2.1.31"; similar_genes "(1)BGLR_CANFA(e-value:2.6e-07;bit-score:53.0)"; Scaffold002 rebuild exon 7451264 7451464 . + . gene_id "RvY_05895"; transcript_id "RvY_05895.1"; Scaffold002 rebuild exon 7451567 7451752 . + . gene_id "RvY_05895"; transcript_id "RvY_05895.1"; Scaffold002 rebuild transcript 7451264 7451485 . + . gene_id "RvY_05895"; transcript_id "RvY_05895.2"; gene_name "(1)PRK10150"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_2_N] Glycosyl hydrolases family 2, sugar binding domain"; CDD "(1)beta-D-glucuronidase; Provisional"; EC "(1)EC3.2.1.31"; similar_genes "(1)BGLR_CANFA(e-value:2.6e-07;bit-score:53.0)"; Scaffold002 rebuild exon 7451264 7451485 . + . gene_id "RvY_05895"; transcript_id "RvY_05895.2"; Scaffold002 rebuild transcript 7451890 7456980 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; gene_name "(1)GUSB(2)lacZ"; annotation "putative Beta-glucuronidase"; Pfam "[Glyco_hydro_2] Glycosyl hydrolases family 2|(1)[Cellulase] Cellulase (glycosyl hydrolase family 5)|[Glyco_hydro_2_C] Glycosyl hydrolases family 2, TIM barrel domain"; CDD "beta-D-glucuronidase; Provisional"; EC "(1)EC3.2.1.31(2)EC3.2.1.23|EC3.2.1.31"; KO "(1)K01195(2)K01190"; similar_genes "BGLR_ECOLI(e-value:1.2e-26;bit-score:118.0)"; Scaffold002 rebuild exon 7451890 7451990 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7452060 7452429 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7452504 7452647 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7455333 7455505 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7455579 7455722 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7455798 7455845 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7456040 7456079 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7456157 7456333 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7456418 7456556 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild exon 7456802 7456980 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.1"; Scaffold002 rebuild transcript 7451890 7456485 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; gene_name "(1)GUSB(2)lacZ"; annotation "putative Beta-glucuronidase"; Pfam "[Glyco_hydro_2] Glycosyl hydrolases family 2|(1)[Cellulase] Cellulase (glycosyl hydrolase family 5)|[Glyco_hydro_2_C] Glycosyl hydrolases family 2, TIM barrel domain"; CDD "beta-D-glucuronidase; Provisional"; EC "(1)EC3.2.1.31(2)EC3.2.1.23|EC3.2.1.31"; KO "(1)K01195(2)K01190"; similar_genes "BGLR_ECOLI(e-value:1.2e-26;bit-score:118.0)"; Scaffold002 rebuild exon 7451890 7451990 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7452060 7452429 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7452504 7452647 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7455333 7455505 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7455579 7455722 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7455798 7455845 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7456040 7456079 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7456157 7456196 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7456280 7456333 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild exon 7456418 7456485 . + . gene_id "RvY_05896"; transcript_id "RvY_05896.2"; Scaffold002 rebuild transcript 7452931 7454825 . - . gene_id "RvY_05897"; transcript_id "RvY_05897.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold002 rebuild exon 7452931 7453178 . - . gene_id "RvY_05897"; transcript_id "RvY_05897.1"; Scaffold002 rebuild exon 7453267 7453552 . - . gene_id "RvY_05897"; transcript_id "RvY_05897.1"; Scaffold002 rebuild exon 7453947 7454449 . - . gene_id "RvY_05897"; transcript_id "RvY_05897.1"; Scaffold002 rebuild exon 7454522 7454825 . - . gene_id "RvY_05897"; transcript_id "RvY_05897.1"; Scaffold002 rebuild transcript 7457014 7457681 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7457014 7457104 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.1"; Scaffold002 rebuild exon 7457172 7457275 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.1"; Scaffold002 rebuild exon 7457372 7457457 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.1"; Scaffold002 rebuild exon 7457537 7457681 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.1"; Scaffold002 rebuild transcript 7457168 7457681 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7457168 7457275 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.2"; Scaffold002 rebuild exon 7457372 7457457 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.2"; Scaffold002 rebuild exon 7457537 7457681 . - . gene_id "RvY_05898"; transcript_id "RvY_05898.2"; Scaffold002 rebuild transcript 7457809 7458637 . + . gene_id "RvY_05899"; transcript_id "RvY_05899.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7457809 7458025 . + . gene_id "RvY_05899"; transcript_id "RvY_05899.1"; Scaffold002 rebuild exon 7458510 7458637 . + . gene_id "RvY_05899"; transcript_id "RvY_05899.1"; Scaffold002 rebuild transcript 7458621 7460046 . - . gene_id "RvY_05900"; transcript_id "RvY_05900.1"; gene_name "HHEX"; annotation "putative Hematopoietically-expressed homeobox protein hhex"; Pfam "[Homeobox]"; KO "K08024"; similar_genes "HHEX_XENLA(e-value:1.5e-26;bit-score:117.0)"; Scaffold002 rebuild exon 7458621 7458966 . - . gene_id "RvY_05900"; transcript_id "RvY_05900.1"; Scaffold002 rebuild exon 7459106 7459322 . - . gene_id "RvY_05900"; transcript_id "RvY_05900.1"; Scaffold002 rebuild exon 7459695 7460046 . - . gene_id "RvY_05900"; transcript_id "RvY_05900.1"; Scaffold002 rebuild transcript 7460391 7460863 . - . gene_id "RvY_05901"; transcript_id "RvY_05901.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7460391 7460435 . - . gene_id "RvY_05901"; transcript_id "RvY_05901.1"; Scaffold002 rebuild exon 7460771 7460863 . - . gene_id "RvY_05901"; transcript_id "RvY_05901.1"; Scaffold002 rebuild transcript 7463801 7464994 . - . gene_id "RvY_05902"; transcript_id "RvY_05902.1"; annotation "TM2 domain-containing protein 2"; Pfam "[TM2]"; similar_genes "TM2D2_BOVIN(e-value:1.2e-51;bit-score:201.0)"; Scaffold002 rebuild exon 7463801 7464014 . - . gene_id "RvY_05902"; transcript_id "RvY_05902.1"; Scaffold002 rebuild exon 7464138 7464253 . - . gene_id "RvY_05902"; transcript_id "RvY_05902.1"; Scaffold002 rebuild exon 7464337 7464424 . - . gene_id "RvY_05902"; transcript_id "RvY_05902.1"; Scaffold002 rebuild exon 7464516 7464994 . - . gene_id "RvY_05902"; transcript_id "RvY_05902.1"; Scaffold002 rebuild transcript 7465920 7469226 . + . gene_id "RvY_05903"; transcript_id "RvY_05903.1"; annotation "hypothetical protein."; Pfam "[Sec3] Exocyst complex component Sec3"; similar_genes "EXOC1_MOUSE(e-value:1.1e-16;bit-score:85.0)"; Scaffold002 rebuild exon 7465920 7466691 . + . gene_id "RvY_05903"; transcript_id "RvY_05903.1"; Scaffold002 rebuild exon 7466761 7467108 . + . gene_id "RvY_05903"; transcript_id "RvY_05903.1"; Scaffold002 rebuild exon 7467381 7468308 . + . gene_id "RvY_05903"; transcript_id "RvY_05903.1"; Scaffold002 rebuild exon 7468617 7469226 . + . gene_id "RvY_05903"; transcript_id "RvY_05903.1"; Scaffold002 rebuild transcript 7469569 7470305 . + . gene_id "RvY_05904"; transcript_id "RvY_05904.1"; gene_name "FRQ1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "CIB3_HUMAN(e-value:1.2e-13;bit-score:74.0)"; Scaffold002 rebuild exon 7469569 7469724 . + . gene_id "RvY_05904"; transcript_id "RvY_05904.1"; Scaffold002 rebuild exon 7469797 7470122 . + . gene_id "RvY_05904"; transcript_id "RvY_05904.1"; Scaffold002 rebuild exon 7470218 7470305 . + . gene_id "RvY_05904"; transcript_id "RvY_05904.1"; Scaffold002 rebuild transcript 7470420 7472812 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; gene_name "DMAP1"; annotation "DNA methyltransferase 1-associated protein 1"; Pfam "[DMAP1] DNA methyltransferase 1-associated protein 1 (DMAP1)"; KO "K11324"; Scaffold002 rebuild exon 7470420 7470488 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; Scaffold002 rebuild exon 7470555 7470937 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; Scaffold002 rebuild exon 7471247 7471562 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; Scaffold002 rebuild exon 7471854 7472272 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; Scaffold002 rebuild exon 7472334 7472621 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; Scaffold002 rebuild exon 7472803 7472812 . - . gene_id "RvY_05905"; transcript_id "RvY_05905.1"; Scaffold002 rebuild transcript 7473530 7474839 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7473530 7473559 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild exon 7473637 7473718 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild exon 7473843 7473958 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild exon 7474044 7474133 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild exon 7474215 7474402 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild exon 7474480 7474576 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild exon 7474762 7474839 . + . gene_id "RvY_05906"; transcript_id "RvY_05906.1"; Scaffold002 rebuild transcript 7475731 7478222 . - . gene_id "RvY_05907"; transcript_id "RvY_05907.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7475731 7476192 . - . gene_id "RvY_05907"; transcript_id "RvY_05907.1"; Scaffold002 rebuild exon 7476282 7476574 . - . gene_id "RvY_05907"; transcript_id "RvY_05907.1"; Scaffold002 rebuild exon 7478057 7478222 . - . gene_id "RvY_05907"; transcript_id "RvY_05907.1"; Scaffold002 rebuild transcript 7478763 7480169 . - . gene_id "RvY_05908"; transcript_id "RvY_05908.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 7478763 7479353 . - . gene_id "RvY_05908"; transcript_id "RvY_05908.1"; Scaffold002 rebuild exon 7479415 7479636 . - . gene_id "RvY_05908"; transcript_id "RvY_05908.1"; Scaffold002 rebuild exon 7479789 7480169 . - . gene_id "RvY_05908"; transcript_id "RvY_05908.1"; Scaffold002 rebuild transcript 7481335 7481700 . - . gene_id "RvY_05909"; transcript_id "RvY_05909.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7481335 7481700 . - . gene_id "RvY_05909"; transcript_id "RvY_05909.1"; Scaffold002 rebuild transcript 7485473 7486873 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; gene_name "(1)STX18"; annotation "(1)syntaxin 18(2,3,4,5)hypothetical protein."; Pfam "[Syntaxin-18_N] SNARE-complex protein Syntaxin-18 N-terminus"; KO "(1)K08492"; similar_genes "(1)STX18_PONAB(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 7485473 7485473 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7485556 7485638 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7485750 7485830 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7485955 7486024 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7486090 7486148 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7486234 7486322 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7486400 7486524 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7486628 7486694 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild exon 7486786 7486873 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.1"; Scaffold002 rebuild transcript 7485949 7486873 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; gene_name "(1)STX18"; annotation "(1)syntaxin 18(2,3,4,5)hypothetical protein."; Pfam "[Syntaxin-18_N] SNARE-complex protein Syntaxin-18 N-terminus"; KO "(1)K08492"; similar_genes "(1)STX18_PONAB(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 7485949 7486024 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; Scaffold002 rebuild exon 7486090 7486148 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; Scaffold002 rebuild exon 7486234 7486322 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; Scaffold002 rebuild exon 7486400 7486524 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; Scaffold002 rebuild exon 7486628 7486694 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; Scaffold002 rebuild exon 7486786 7486873 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.2"; Scaffold002 rebuild transcript 7486891 7487319 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.3"; gene_name "(1)STX18"; annotation "(1)syntaxin 18(2,3,4,5)hypothetical protein."; Pfam "[Syntaxin-18_N] SNARE-complex protein Syntaxin-18 N-terminus"; KO "(1)K08492"; similar_genes "(1)STX18_PONAB(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 7486891 7487319 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.3"; Scaffold002 rebuild transcript 7486769 7487383 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.4"; gene_name "(1)STX18"; annotation "(1)syntaxin 18(2,3,4,5)hypothetical protein."; Pfam "[Syntaxin-18_N] SNARE-complex protein Syntaxin-18 N-terminus"; KO "(1)K08492"; similar_genes "(1)STX18_PONAB(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 7486769 7486857 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.4"; Scaffold002 rebuild exon 7486947 7487045 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.4"; Scaffold002 rebuild exon 7487117 7487180 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.4"; Scaffold002 rebuild exon 7487243 7487383 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.4"; Scaffold002 rebuild transcript 7486891 7487319 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.5"; gene_name "(1)STX18"; annotation "(1)syntaxin 18(2,3,4,5)hypothetical protein."; Pfam "[Syntaxin-18_N] SNARE-complex protein Syntaxin-18 N-terminus"; KO "(1)K08492"; similar_genes "(1)STX18_PONAB(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 7486891 7487041 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.5"; Scaffold002 rebuild exon 7487117 7487319 . - . gene_id "RvY_05910"; transcript_id "RvY_05910.5"; Scaffold002 rebuild transcript 7487759 7489174 . + . gene_id "RvY_05911"; transcript_id "RvY_05911.1"; gene_name "UPF0020"; annotation "putative THUMP domain-containing protein 3"; Pfam "[Methyltransf_26] Methyltransferase domain|[UPF0020] Putative RNA methylase family UPF0020|[THUMP]"; CDD "Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains."; similar_genes "THUM3_BOVIN(e-value:3.5e-30;bit-score:129.0)"; Scaffold002 rebuild exon 7487759 7488441 . + . gene_id "RvY_05911"; transcript_id "RvY_05911.1"; Scaffold002 rebuild exon 7488644 7488967 . + . gene_id "RvY_05911"; transcript_id "RvY_05911.1"; Scaffold002 rebuild exon 7489030 7489174 . + . gene_id "RvY_05911"; transcript_id "RvY_05911.1"; Scaffold002 rebuild transcript 7489677 7491475 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; gene_name "COG0429"; annotation "putative Abhydrolase domain-containing protein 2"; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]"; EC "EC3.1.1.-"; KO "K13697"; similar_genes "ABHD2_HUMAN(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 7489677 7490039 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; Scaffold002 rebuild exon 7490184 7490545 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; Scaffold002 rebuild exon 7490625 7490714 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; Scaffold002 rebuild exon 7490808 7490975 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; Scaffold002 rebuild exon 7491076 7491257 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; Scaffold002 rebuild exon 7491315 7491475 . - . gene_id "RvY_05912"; transcript_id "RvY_05912.1"; Scaffold002 rebuild transcript 7492214 7493261 . + . gene_id "RvY_05913"; transcript_id "RvY_05913.1"; annotation "putative Transmembrane emp24 domain-containing protein 9"; Pfam "[EMP24_GP25L] emp24/gp25L/p24 family/GOLD"; similar_genes "TMED9_BOVIN(e-value:1.5e-41;bit-score:167.0)"; Scaffold002 rebuild exon 7492214 7492346 . + . gene_id "RvY_05913"; transcript_id "RvY_05913.1"; Scaffold002 rebuild exon 7492416 7492636 . + . gene_id "RvY_05913"; transcript_id "RvY_05913.1"; Scaffold002 rebuild exon 7492884 7493030 . + . gene_id "RvY_05913"; transcript_id "RvY_05913.1"; Scaffold002 rebuild exon 7493112 7493261 . + . gene_id "RvY_05913"; transcript_id "RvY_05913.1"; Scaffold002 rebuild transcript 7494179 7495517 . + . gene_id "RvY_05914"; transcript_id "RvY_05914.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7494179 7494883 . + . gene_id "RvY_05914"; transcript_id "RvY_05914.1"; Scaffold002 rebuild exon 7495119 7495517 . + . gene_id "RvY_05914"; transcript_id "RvY_05914.1"; Scaffold002 rebuild transcript 7496572 7497609 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.1"; gene_name "(1,4)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 7496572 7497609 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.1"; Scaffold002 rebuild transcript 7498649 7501388 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.2"; gene_name "(1,4)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 7498649 7498846 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.2"; Scaffold002 rebuild exon 7500843 7501388 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.2"; Scaffold002 rebuild transcript 7495893 7501388 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.3"; gene_name "(1,4)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 7495893 7495913 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.3"; Scaffold002 rebuild exon 7496008 7496136 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.3"; Scaffold002 rebuild exon 7500843 7501388 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.3"; Scaffold002 rebuild transcript 7496108 7497609 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.4"; gene_name "(1,4)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,4)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 7496108 7496136 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.4"; Scaffold002 rebuild exon 7497042 7497609 . - . gene_id "RvY_05915"; transcript_id "RvY_05915.4"; Scaffold002 rebuild transcript 7502190 7503507 . + . gene_id "RvY_05916"; transcript_id "RvY_05916.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C48] Ulp1 protease family, C-terminal catalytic domain"; Scaffold002 rebuild exon 7502190 7502277 . + . gene_id "RvY_05916"; transcript_id "RvY_05916.1"; Scaffold002 rebuild exon 7502335 7502490 . + . gene_id "RvY_05916"; transcript_id "RvY_05916.1"; Scaffold002 rebuild exon 7502557 7502975 . + . gene_id "RvY_05916"; transcript_id "RvY_05916.1"; Scaffold002 rebuild exon 7503136 7503507 . + . gene_id "RvY_05916"; transcript_id "RvY_05916.1"; Scaffold002 rebuild transcript 7503704 7505927 . - . gene_id "RvY_05917"; transcript_id "RvY_05917.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7503704 7503996 . - . gene_id "RvY_05917"; transcript_id "RvY_05917.1"; Scaffold002 rebuild exon 7504191 7505461 . - . gene_id "RvY_05917"; transcript_id "RvY_05917.1"; Scaffold002 rebuild exon 7505539 7505927 . - . gene_id "RvY_05917"; transcript_id "RvY_05917.1"; Scaffold002 rebuild transcript 7506285 7507450 . + . gene_id "RvY_05918"; transcript_id "RvY_05918.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 7506285 7506614 . + . gene_id "RvY_05918"; transcript_id "RvY_05918.1"; Scaffold002 rebuild exon 7506869 7507450 . + . gene_id "RvY_05918"; transcript_id "RvY_05918.1"; Scaffold002 rebuild transcript 7507483 7507964 . - . gene_id "RvY_05919"; transcript_id "RvY_05919.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7507483 7507856 . - . gene_id "RvY_05919"; transcript_id "RvY_05919.1"; Scaffold002 rebuild exon 7507937 7507964 . - . gene_id "RvY_05919"; transcript_id "RvY_05919.1"; Scaffold002 rebuild transcript 7508099 7508440 . - . gene_id "RvY_05920"; transcript_id "RvY_05920.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7508099 7508440 . - . gene_id "RvY_05920"; transcript_id "RvY_05920.1"; Scaffold002 rebuild transcript 7509298 7510044 . + . gene_id "RvY_05921"; transcript_id "RvY_05921.1"; gene_name "trxA"; annotation "putative Thioredoxin, mitochondrial"; Pfam "[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_7] Thioredoxin-like|[Thioredoxin]"; CDD "thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this HMM. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin."; KO "K03671"; similar_genes "THIOM_BOVIN(e-value:6.9e-29;bit-score:125.0)"; Scaffold002 rebuild exon 7509298 7509364 . + . gene_id "RvY_05921"; transcript_id "RvY_05921.1"; Scaffold002 rebuild exon 7509512 7509662 . + . gene_id "RvY_05921"; transcript_id "RvY_05921.1"; Scaffold002 rebuild exon 7509733 7509856 . + . gene_id "RvY_05921"; transcript_id "RvY_05921.1"; Scaffold002 rebuild exon 7509928 7510044 . + . gene_id "RvY_05921"; transcript_id "RvY_05921.1"; Scaffold002 rebuild transcript 7510442 7512183 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7510442 7510622 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.1"; Scaffold002 rebuild exon 7510696 7510787 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.1"; Scaffold002 rebuild exon 7510867 7512183 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.1"; Scaffold002 rebuild transcript 7510698 7512183 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7510698 7510787 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.2"; Scaffold002 rebuild exon 7510867 7512183 . + . gene_id "RvY_05922"; transcript_id "RvY_05922.2"; Scaffold002 rebuild transcript 7513110 7516568 . + . gene_id "RvY_05923"; transcript_id "RvY_05923.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7513110 7513785 . + . gene_id "RvY_05923"; transcript_id "RvY_05923.1"; Scaffold002 rebuild exon 7513994 7514650 . + . gene_id "RvY_05923"; transcript_id "RvY_05923.1"; Scaffold002 rebuild exon 7514743 7516568 . + . gene_id "RvY_05923"; transcript_id "RvY_05923.1"; Scaffold002 rebuild transcript 7517030 7517728 . - . gene_id "RvY_05924"; transcript_id "RvY_05924.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7517030 7517728 . - . gene_id "RvY_05924"; transcript_id "RvY_05924.1"; Scaffold002 rebuild transcript 7516958 7517728 . - . gene_id "RvY_05924"; transcript_id "RvY_05924.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7516958 7516977 . - . gene_id "RvY_05924"; transcript_id "RvY_05924.2"; Scaffold002 rebuild exon 7517053 7517728 . - . gene_id "RvY_05924"; transcript_id "RvY_05924.2"; Scaffold002 rebuild transcript 7519772 7520889 . + . gene_id "RvY_05925"; transcript_id "RvY_05925.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7519772 7519794 . + . gene_id "RvY_05925"; transcript_id "RvY_05925.1"; Scaffold002 rebuild exon 7519858 7519995 . + . gene_id "RvY_05925"; transcript_id "RvY_05925.1"; Scaffold002 rebuild exon 7520059 7520214 . + . gene_id "RvY_05925"; transcript_id "RvY_05925.1"; Scaffold002 rebuild exon 7520279 7520408 . + . gene_id "RvY_05925"; transcript_id "RvY_05925.1"; Scaffold002 rebuild exon 7520542 7520889 . + . gene_id "RvY_05925"; transcript_id "RvY_05925.1"; Scaffold002 rebuild transcript 7521435 7521695 . - . gene_id "RvY_05926"; transcript_id "RvY_05926.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7521435 7521695 . - . gene_id "RvY_05926"; transcript_id "RvY_05926.1"; Scaffold002 rebuild transcript 7521902 7522286 . - . gene_id "RvY_05927"; transcript_id "RvY_05927.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7521902 7522078 . - . gene_id "RvY_05927"; transcript_id "RvY_05927.1"; Scaffold002 rebuild exon 7522152 7522286 . - . gene_id "RvY_05927"; transcript_id "RvY_05927.1"; Scaffold002 rebuild transcript 7523561 7524996 . + . gene_id "RvY_05928"; transcript_id "RvY_05928.1"; annotation "hypothetical protein."; Pfam "[DRMBL] DNA repair metallo-beta-lactamase|[Lactamase_B_2] Beta-lactamase superfamily domain"; KO "K15340"; similar_genes "DCR1A_MOUSE(e-value:1.3e-19;bit-score:94.0)"; Scaffold002 rebuild exon 7523561 7524236 . + . gene_id "RvY_05928"; transcript_id "RvY_05928.1"; Scaffold002 rebuild exon 7524467 7524996 . + . gene_id "RvY_05928"; transcript_id "RvY_05928.1"; Scaffold002 rebuild transcript 7525615 7526670 . + . gene_id "RvY_05929"; transcript_id "RvY_05929.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold002 rebuild exon 7525615 7525846 . + . gene_id "RvY_05929"; transcript_id "RvY_05929.1"; Scaffold002 rebuild exon 7525922 7526036 . + . gene_id "RvY_05929"; transcript_id "RvY_05929.1"; Scaffold002 rebuild exon 7526108 7526283 . + . gene_id "RvY_05929"; transcript_id "RvY_05929.1"; Scaffold002 rebuild exon 7526432 7526670 . + . gene_id "RvY_05929"; transcript_id "RvY_05929.1"; Scaffold002 rebuild transcript 7526734 7528463 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; gene_name "DUS4"; annotation "tRNA-dihydrouridine synthase 4 [EC:1.-.-.-]"; Pfam "[Dus] Dihydrouridine synthase (Dus)"; CDD "Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present."; EC "EC1.-.-.-"; KO "K05545"; similar_genes "YQI2_CAEEL(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 7526734 7526928 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7527144 7527438 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7527494 7527580 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7527677 7527730 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7527815 7527856 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7527941 7528016 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7528142 7528263 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild exon 7528375 7528463 . - . gene_id "RvY_05930"; transcript_id "RvY_05930.1"; Scaffold002 rebuild transcript 7528762 7529073 . - . gene_id "RvY_05931"; transcript_id "RvY_05931.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7528762 7529073 . - . gene_id "RvY_05931"; transcript_id "RvY_05931.1"; Scaffold002 rebuild transcript 7529096 7530724 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; gene_name "glyox_I"; annotation "putative Glyoxalase 1"; Pfam "[Glyoxalase] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|[Glyoxalase_2] Glyoxalase-like domain"; CDD "lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this HMM twice."; similar_genes "GLOD4_CAEEL(e-value:1.4e-31;bit-score:134.0)"; Scaffold002 rebuild exon 7529096 7529185 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7529261 7529310 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7529380 7529500 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7529572 7529719 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7529804 7529854 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7529954 7530033 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7530108 7530197 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7530282 7530395 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7530466 7530552 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild exon 7530668 7530724 . + . gene_id "RvY_05932"; transcript_id "RvY_05932.1"; Scaffold002 rebuild transcript 7530955 7531980 . - . gene_id "RvY_05933"; transcript_id "RvY_05933.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7530955 7531251 . - . gene_id "RvY_05933"; transcript_id "RvY_05933.1"; Scaffold002 rebuild exon 7531337 7531491 . - . gene_id "RvY_05933"; transcript_id "RvY_05933.1"; Scaffold002 rebuild exon 7531584 7531730 . - . gene_id "RvY_05933"; transcript_id "RvY_05933.1"; Scaffold002 rebuild exon 7531798 7531833 . - . gene_id "RvY_05933"; transcript_id "RvY_05933.1"; Scaffold002 rebuild exon 7531902 7531980 . - . gene_id "RvY_05933"; transcript_id "RvY_05933.1"; Scaffold002 rebuild transcript 7532584 7533119 . - . gene_id "RvY_05934"; transcript_id "RvY_05934.1"; annotation "hypothetical protein."; Pfam "[UPF0203] Uncharacterised protein family (UPF0203)"; Scaffold002 rebuild exon 7532584 7532676 . - . gene_id "RvY_05934"; transcript_id "RvY_05934.1"; Scaffold002 rebuild exon 7532748 7533119 . - . gene_id "RvY_05934"; transcript_id "RvY_05934.1"; Scaffold002 rebuild transcript 7533766 7534069 . + . gene_id "RvY_05935"; transcript_id "RvY_05935.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7533766 7533822 . + . gene_id "RvY_05935"; transcript_id "RvY_05935.1"; Scaffold002 rebuild exon 7533992 7534069 . + . gene_id "RvY_05935"; transcript_id "RvY_05935.1"; Scaffold002 rebuild transcript 7535006 7535840 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.1"; annotation "hypothetical protein."; Pfam "[Folate_rec] Folate receptor family"; Scaffold002 rebuild exon 7535006 7535161 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.1"; Scaffold002 rebuild exon 7535484 7535840 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.1"; Scaffold002 rebuild transcript 7534235 7535522 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.2"; annotation "hypothetical protein."; Pfam "[Folate_rec] Folate receptor family"; Scaffold002 rebuild exon 7534235 7534564 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.2"; Scaffold002 rebuild exon 7535042 7535161 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.2"; Scaffold002 rebuild exon 7535484 7535522 . - . gene_id "RvY_05936"; transcript_id "RvY_05936.2"; Scaffold002 rebuild transcript 7537307 7539256 . - . gene_id "RvY_05937"; transcript_id "RvY_05937.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold002 rebuild exon 7537307 7538198 . - . gene_id "RvY_05937"; transcript_id "RvY_05937.1"; Scaffold002 rebuild exon 7538336 7538366 . - . gene_id "RvY_05937"; transcript_id "RvY_05937.1"; Scaffold002 rebuild exon 7538474 7538552 . - . gene_id "RvY_05937"; transcript_id "RvY_05937.1"; Scaffold002 rebuild exon 7538648 7539256 . - . gene_id "RvY_05937"; transcript_id "RvY_05937.1"; Scaffold002 rebuild transcript 7539607 7540375 . - . gene_id "RvY_05938"; transcript_id "RvY_05938.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7539607 7539770 . - . gene_id "RvY_05938"; transcript_id "RvY_05938.1"; Scaffold002 rebuild exon 7540168 7540375 . - . gene_id "RvY_05938"; transcript_id "RvY_05938.1"; Scaffold002 rebuild transcript 7540385 7541477 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7540385 7540763 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.1"; Scaffold002 rebuild exon 7540965 7541034 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.1"; Scaffold002 rebuild exon 7541165 7541351 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.1"; Scaffold002 rebuild exon 7541442 7541477 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.1"; Scaffold002 rebuild transcript 7540441 7541477 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7540441 7540763 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.2"; Scaffold002 rebuild exon 7541165 7541351 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.2"; Scaffold002 rebuild exon 7541442 7541477 . - . gene_id "RvY_05939"; transcript_id "RvY_05939.2"; Scaffold002 rebuild transcript 7542304 7545781 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; gene_name "prpE"; annotation "putative Acyl-CoA synthetase short-chain family member 3, mitochondrial"; Pfam "[DUF4009]|[AMP-binding] AMP-binding enzyme|[DUF3448]"; CDD "propionyl-CoA synthetase; Provisional"; EC "EC6.2.1.1|EC6.2.1.17"; KO "K01908"; similar_genes "ACSS3_HUMAN(e-value:2.2e-38;bit-score:157.0)"; Scaffold002 rebuild exon 7542304 7542620 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7542751 7542895 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7542993 7543181 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7543256 7543390 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7543497 7543637 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7543752 7543925 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7544010 7544120 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7544172 7544319 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7544390 7544485 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7544578 7544644 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7544733 7544814 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7544885 7544957 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7545050 7545099 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7545183 7545282 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7545374 7545549 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild exon 7545683 7545781 . + . gene_id "RvY_05940"; transcript_id "RvY_05940.1"; Scaffold002 rebuild transcript 7549183 7558669 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; gene_name "CUGBP"; annotation "CUG-BP- and ETR-3-like factor 3-B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "K13207"; similar_genes "CEL3B_XENLA(e-value:1.4e-82;bit-score:303.0)"; Scaffold002 rebuild exon 7549183 7549546 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7552461 7552543 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7555408 7555456 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7555602 7555730 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7555817 7556049 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7556778 7557063 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7557511 7557612 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7557787 7557924 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7558449 7558496 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild exon 7558587 7558669 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.1"; Scaffold002 rebuild transcript 7549183 7558002 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; gene_name "CUGBP"; annotation "CUG-BP- and ETR-3-like factor 3-B"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "K13207"; similar_genes "CEL3B_XENLA(e-value:1.4e-82;bit-score:303.0)"; Scaffold002 rebuild exon 7549183 7549546 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7552461 7552543 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7555408 7555456 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7555602 7555730 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7555817 7556049 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7556778 7557021 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7557511 7557612 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild exon 7557959 7558002 . + . gene_id "RvY_05941"; transcript_id "RvY_05941.2"; Scaffold002 rebuild transcript 7558842 7559231 . + . gene_id "RvY_05942"; transcript_id "RvY_05942.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7558842 7559231 . + . gene_id "RvY_05942"; transcript_id "RvY_05942.1"; Scaffold002 rebuild transcript 7559771 7560987 . + . gene_id "RvY_05943"; transcript_id "RvY_05943.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7559771 7560380 . + . gene_id "RvY_05943"; transcript_id "RvY_05943.1"; Scaffold002 rebuild exon 7560486 7560620 . + . gene_id "RvY_05943"; transcript_id "RvY_05943.1"; Scaffold002 rebuild exon 7560707 7560987 . + . gene_id "RvY_05943"; transcript_id "RvY_05943.1"; Scaffold002 rebuild transcript 7561416 7561843 . - . gene_id "RvY_05944"; transcript_id "RvY_05944.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold002 rebuild exon 7561416 7561716 . - . gene_id "RvY_05944"; transcript_id "RvY_05944.1"; Scaffold002 rebuild exon 7561788 7561843 . - . gene_id "RvY_05944"; transcript_id "RvY_05944.1"; Scaffold002 rebuild transcript 7561867 7562334 . - . gene_id "RvY_05945"; transcript_id "RvY_05945.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7561867 7562334 . - . gene_id "RvY_05945"; transcript_id "RvY_05945.1"; Scaffold002 rebuild transcript 7562875 7563664 . + . gene_id "RvY_05946"; transcript_id "RvY_05946.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7562875 7562992 . + . gene_id "RvY_05946"; transcript_id "RvY_05946.1"; Scaffold002 rebuild exon 7563129 7563664 . + . gene_id "RvY_05946"; transcript_id "RvY_05946.1"; Scaffold002 rebuild transcript 7564518 7565216 . + . gene_id "RvY_05947"; transcript_id "RvY_05947.1"; annotation "hypothetical protein."; Pfam "[DUF2828]"; Scaffold002 rebuild exon 7564518 7564877 . + . gene_id "RvY_05947"; transcript_id "RvY_05947.1"; Scaffold002 rebuild exon 7565079 7565216 . + . gene_id "RvY_05947"; transcript_id "RvY_05947.1"; Scaffold002 rebuild transcript 7565437 7566654 . + . gene_id "RvY_05948"; transcript_id "RvY_05948.1"; annotation "hypothetical protein."; Pfam "[DUF2828]"; Scaffold002 rebuild exon 7565437 7565502 . + . gene_id "RvY_05948"; transcript_id "RvY_05948.1"; Scaffold002 rebuild exon 7565783 7565957 . + . gene_id "RvY_05948"; transcript_id "RvY_05948.1"; Scaffold002 rebuild exon 7566068 7566315 . + . gene_id "RvY_05948"; transcript_id "RvY_05948.1"; Scaffold002 rebuild exon 7566571 7566654 . + . gene_id "RvY_05948"; transcript_id "RvY_05948.1"; Scaffold002 rebuild transcript 7567751 7569462 . + . gene_id "RvY_05949"; transcript_id "RvY_05949.1"; gene_name "AKAP7_NLS"; annotation "hypothetical protein."; Pfam "[AKAP7_NLS] AKAP7 2'5' RNA ligase-like domain|[RWD]"; CDD "Protein kinase A anchor protein nuclear localisation signal. AKAP7_NLS is the N-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes. AKAP7_NLS carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein. Binding to the regulatory subunits RI and RII of PKA is mediated via the family AKAP7_RIRII_bdg. at the C-terminus."; similar_genes "LENG9_HUMAN(e-value:3.1e-12;bit-score:70.0)"; Scaffold002 rebuild exon 7567751 7567901 . + . gene_id "RvY_05949"; transcript_id "RvY_05949.1"; Scaffold002 rebuild exon 7568066 7568698 . + . gene_id "RvY_05949"; transcript_id "RvY_05949.1"; Scaffold002 rebuild exon 7568768 7569462 . + . gene_id "RvY_05949"; transcript_id "RvY_05949.1"; Scaffold002 rebuild transcript 7569634 7570992 . - . gene_id "RvY_05950"; transcript_id "RvY_05950.1"; gene_name "BRN"; annotation "putative enzyme (brainiac)"; Pfam "[Galactosyl_T] Galactosyltransferase"; KO "K02175"; Scaffold002 rebuild exon 7569634 7570992 . - . gene_id "RvY_05950"; transcript_id "RvY_05950.1"; Scaffold002 rebuild transcript 7571665 7579119 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; annotation "hypothetical protein."; Pfam "[Sec39] Secretory pathway protein Sec39"; Scaffold002 rebuild exon 7571665 7571760 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7571853 7571919 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7571991 7572117 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7572183 7572301 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7572389 7572531 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7572600 7572670 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7572753 7572806 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7572886 7573126 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7573197 7573628 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7573819 7574044 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7574099 7574402 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7574522 7574842 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7575110 7575512 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7575739 7575921 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7575990 7576183 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7576389 7576617 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7576760 7577187 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7577318 7578057 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild exon 7578458 7579119 . + . gene_id "RvY_05951"; transcript_id "RvY_05951.1"; Scaffold002 rebuild transcript 7579421 7579657 . - . gene_id "RvY_05952"; transcript_id "RvY_05952.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7579421 7579657 . - . gene_id "RvY_05952"; transcript_id "RvY_05952.1"; Scaffold002 rebuild transcript 7580539 7582311 . + . gene_id "RvY_05953"; transcript_id "RvY_05953.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 7580539 7580876 . + . gene_id "RvY_05953"; transcript_id "RvY_05953.1"; Scaffold002 rebuild exon 7581118 7581426 . + . gene_id "RvY_05953"; transcript_id "RvY_05953.1"; Scaffold002 rebuild exon 7581571 7581957 . + . gene_id "RvY_05953"; transcript_id "RvY_05953.1"; Scaffold002 rebuild exon 7582080 7582311 . + . gene_id "RvY_05953"; transcript_id "RvY_05953.1"; Scaffold002 rebuild transcript 7582952 7584603 . + . gene_id "RvY_05954"; transcript_id "RvY_05954.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7582952 7583310 . + . gene_id "RvY_05954"; transcript_id "RvY_05954.1"; Scaffold002 rebuild exon 7583557 7583832 . + . gene_id "RvY_05954"; transcript_id "RvY_05954.1"; Scaffold002 rebuild exon 7583927 7584313 . + . gene_id "RvY_05954"; transcript_id "RvY_05954.1"; Scaffold002 rebuild exon 7584387 7584603 . + . gene_id "RvY_05954"; transcript_id "RvY_05954.1"; Scaffold002 rebuild transcript 7585118 7585480 . + . gene_id "RvY_05955"; transcript_id "RvY_05955.1"; annotation "hypothetical protein."; Pfam "[DUF3469]"; Scaffold002 rebuild exon 7585118 7585284 . + . gene_id "RvY_05955"; transcript_id "RvY_05955.1"; Scaffold002 rebuild exon 7585354 7585480 . + . gene_id "RvY_05955"; transcript_id "RvY_05955.1"; Scaffold002 rebuild transcript 7585827 7587287 . - . gene_id "RvY_05956"; transcript_id "RvY_05956.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7585827 7587287 . - . gene_id "RvY_05956"; transcript_id "RvY_05956.1"; Scaffold002 rebuild transcript 7590622 7594100 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; annotation "Lateral signaling target protein 2 homolog"; Pfam "[FYVE] FYVE zinc finger"; similar_genes "LST2_DANRE(e-value:1.1e-54;bit-score:211.0)"; Scaffold002 rebuild exon 7590622 7590813 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7591125 7591228 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7591320 7591541 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7591974 7592104 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7592196 7592438 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7592596 7592787 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7593016 7593105 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7593198 7593400 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7593703 7593984 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild exon 7594041 7594100 . - . gene_id "RvY_05957"; transcript_id "RvY_05957.1"; Scaffold002 rebuild transcript 7595789 7596371 . - . gene_id "RvY_05958"; transcript_id "RvY_05958.1"; gene_name "H2A"; annotation "Histone H2A"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone 2A."; KO "K11251"; similar_genes "H2A_DROME(e-value:6.6e-57;bit-score:218.0)"; Scaffold002 rebuild exon 7595789 7596007 . - . gene_id "RvY_05958"; transcript_id "RvY_05958.1"; Scaffold002 rebuild exon 7596096 7596371 . - . gene_id "RvY_05958"; transcript_id "RvY_05958.1"; Scaffold002 rebuild transcript 7596776 7597254 . + . gene_id "RvY_05959"; transcript_id "RvY_05959.1"; gene_name "H2B"; annotation "putative Histone H2B"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H2B."; KO "K11252"; similar_genes "H2B_DROME(e-value:5.3e-48;bit-score:189.0)"; Scaffold002 rebuild exon 7596776 7596870 . + . gene_id "RvY_05959"; transcript_id "RvY_05959.1"; Scaffold002 rebuild exon 7596972 7597254 . + . gene_id "RvY_05959"; transcript_id "RvY_05959.1"; Scaffold002 rebuild transcript 7597841 7598110 . - . gene_id "RvY_05960"; transcript_id "RvY_05960.0"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7597841 7597980 . - . gene_id "RvY_05960"; transcript_id "RvY_05960.0"; Scaffold002 rebuild exon 7598056 7598110 . - . gene_id "RvY_05960"; transcript_id "RvY_05960.0"; Scaffold002 rebuild transcript 7598735 7599226 . - . gene_id "RvY_05961"; transcript_id "RvY_05961.1"; gene_name "H3"; annotation "Histone H3"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "histone 3; Provisional"; KO "K11253"; similar_genes "H3_DROME(e-value:4.8e-70;bit-score:262.0)"; Scaffold002 rebuild exon 7598735 7598863 . - . gene_id "RvY_05961"; transcript_id "RvY_05961.1"; Scaffold002 rebuild exon 7598945 7599226 . - . gene_id "RvY_05961"; transcript_id "RvY_05961.1"; Scaffold002 rebuild transcript 7599920 7600343 . + . gene_id "RvY_05962"; transcript_id "RvY_05962.1"; gene_name "H4"; annotation "Histone H4"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "histone 4; Provisional"; KO "K11254"; similar_genes "H4_DROME(e-value:5.5e-52;bit-score:202.0)"; Scaffold002 rebuild exon 7599920 7599959 . + . gene_id "RvY_05962"; transcript_id "RvY_05962.1"; Scaffold002 rebuild exon 7600072 7600343 . + . gene_id "RvY_05962"; transcript_id "RvY_05962.1"; Scaffold002 rebuild transcript 7601065 7602713 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.1"; gene_name "(1)nagK(2)BcrAD_BadFG"; annotation "(1)N-acetylglucosamine kinase [EC:2.7.1.59](2)hypothetical protein."; Pfam "[BcrAD_BadFG] BadF/BadG/BcrA/BcrD ATPase family"; CDD "BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370."; EC "(1)EC2.7.1.59"; KO "(1)K00884"; similar_genes "(1)NAGK_RAT(e-value:7.3e-18;bit-score:88.0)"; Scaffold002 rebuild exon 7601065 7601431 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.1"; Scaffold002 rebuild exon 7601567 7601620 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.1"; Scaffold002 rebuild exon 7601770 7601865 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.1"; Scaffold002 rebuild exon 7601965 7602336 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.1"; Scaffold002 rebuild exon 7602523 7602713 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.1"; Scaffold002 rebuild transcript 7601803 7602713 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.2"; gene_name "(1)nagK(2)BcrAD_BadFG"; annotation "(1)N-acetylglucosamine kinase [EC:2.7.1.59](2)hypothetical protein."; Pfam "[BcrAD_BadFG] BadF/BadG/BcrA/BcrD ATPase family"; CDD "BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370."; EC "(1)EC2.7.1.59"; KO "(1)K00884"; similar_genes "(1)NAGK_RAT(e-value:7.3e-18;bit-score:88.0)"; Scaffold002 rebuild exon 7601803 7601869 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.2"; Scaffold002 rebuild exon 7601965 7602336 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.2"; Scaffold002 rebuild exon 7602523 7602713 . + . gene_id "RvY_05963"; transcript_id "RvY_05963.2"; Scaffold002 rebuild transcript 7603155 7605480 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; gene_name "(1)SGPP1(2)PAP2_SPPase1"; annotation "(1)sphingosine-1-phosphate phosphatase 1 [EC:3.1.3.-](2)hypothetical protein."; Pfam "[PAP2] PAP2 superfamily"; CDD "PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family."; EC "EC3.1.3.-"; KO "(1)K04716"; similar_genes "SGPP2_MOUSE(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 7603155 7603225 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7603294 7603611 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7603864 7604086 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7604162 7604251 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7604350 7604416 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7604491 7604517 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7604657 7604734 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7604826 7604855 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild exon 7604924 7605480 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.1"; Scaffold002 rebuild transcript 7604275 7605480 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.2"; gene_name "(1)SGPP1(2)PAP2_SPPase1"; annotation "(1)sphingosine-1-phosphate phosphatase 1 [EC:3.1.3.-](2)hypothetical protein."; Pfam "[PAP2] PAP2 superfamily"; CDD "PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family."; EC "EC3.1.3.-"; KO "(1)K04716"; similar_genes "SGPP2_MOUSE(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 7604275 7604416 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.2"; Scaffold002 rebuild exon 7604491 7604517 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.2"; Scaffold002 rebuild exon 7604657 7604734 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.2"; Scaffold002 rebuild exon 7604826 7604855 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.2"; Scaffold002 rebuild exon 7604924 7605480 . - . gene_id "RvY_05964"; transcript_id "RvY_05964.2"; Scaffold002 rebuild transcript 7606839 7607192 . + . gene_id "RvY_05965"; transcript_id "RvY_05965.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7606839 7607192 . + . gene_id "RvY_05965"; transcript_id "RvY_05965.1"; Scaffold002 rebuild transcript 7610012 7612017 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; gene_name "TMOD"; annotation "tropomodulin"; Pfam "[Tropomodulin]"; KO "K10370"; similar_genes "TMOD_CAEEL(e-value:7.6e-24;bit-score:108.0)"; Scaffold002 rebuild exon 7610012 7610194 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild exon 7610400 7610543 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild exon 7610682 7610789 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild exon 7610858 7610988 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild exon 7611276 7611515 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild exon 7611643 7611802 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild exon 7611898 7612017 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.1"; Scaffold002 rebuild transcript 7609948 7612017 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; gene_name "TMOD"; annotation "tropomodulin"; Pfam "[Tropomodulin]"; KO "K10370"; similar_genes "TMOD_CAEEL(e-value:7.6e-24;bit-score:108.0)"; Scaffold002 rebuild exon 7609948 7609958 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7610029 7610194 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7610400 7610543 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7610682 7610789 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7610858 7610988 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7611276 7611515 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7611643 7611802 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild exon 7611898 7612017 . - . gene_id "RvY_05966"; transcript_id "RvY_05966.2"; Scaffold002 rebuild transcript 7612953 7614742 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; gene_name "galM"; annotation "aldose 1-epimerase [EC:5.1.3.3]"; Pfam "[Aldose_epim] Aldose 1-epimerase"; CDD "galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose."; EC "EC5.1.3.3"; KO "K01785"; Scaffold002 rebuild exon 7612953 7613193 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild exon 7613251 7613405 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild exon 7613469 7613699 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild exon 7613767 7613996 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild exon 7614078 7614108 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild exon 7614188 7614331 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild exon 7614593 7614742 . + . gene_id "RvY_05967"; transcript_id "RvY_05967.1"; Scaffold002 rebuild transcript 7614986 7620259 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold002 rebuild exon 7614986 7615291 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7615354 7615426 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7615498 7615562 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7615651 7615776 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7615847 7615934 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7616002 7616069 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7616140 7616473 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7616544 7616657 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7616724 7618257 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7618321 7618777 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7618956 7619260 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7619365 7619926 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild exon 7620164 7620259 . - . gene_id "RvY_05968"; transcript_id "RvY_05968.1"; Scaffold002 rebuild transcript 7614993 7615295 . + . gene_id "RvY_05969"; transcript_id "RvY_05969.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7614993 7615295 . + . gene_id "RvY_05969"; transcript_id "RvY_05969.1"; Scaffold002 rebuild transcript 7621169 7622069 . - . gene_id "RvY_05970"; transcript_id "RvY_05970.1"; gene_name "SNRPB2"; annotation "putative U2 small nuclear ribonucleoprotein B''"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K11094"; similar_genes "RU2B_HUMAN(e-value:2.4e-31;bit-score:133.0)"; Scaffold002 rebuild exon 7621169 7621221 . - . gene_id "RvY_05970"; transcript_id "RvY_05970.1"; Scaffold002 rebuild exon 7621297 7621669 . - . gene_id "RvY_05970"; transcript_id "RvY_05970.1"; Scaffold002 rebuild exon 7621732 7621871 . - . gene_id "RvY_05970"; transcript_id "RvY_05970.1"; Scaffold002 rebuild exon 7621958 7622069 . - . gene_id "RvY_05970"; transcript_id "RvY_05970.1"; Scaffold002 rebuild transcript 7622355 7623896 . + . gene_id "RvY_05971"; transcript_id "RvY_05971.1"; gene_name "ORC5"; annotation "origin recognition complex subunit 5"; Pfam "[AAA_16] AAA ATPase domain"; CDD "Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]"; KO "K02607"; Scaffold002 rebuild exon 7622355 7622987 . + . gene_id "RvY_05971"; transcript_id "RvY_05971.1"; Scaffold002 rebuild exon 7623201 7623896 . + . gene_id "RvY_05971"; transcript_id "RvY_05971.1"; Scaffold002 rebuild transcript 7624311 7624625 . - . gene_id "RvY_05972"; transcript_id "RvY_05972.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7624311 7624441 . - . gene_id "RvY_05972"; transcript_id "RvY_05972.1"; Scaffold002 rebuild exon 7624508 7624625 . - . gene_id "RvY_05972"; transcript_id "RvY_05972.1"; Scaffold002 rebuild transcript 7626640 7628025 . + . gene_id "RvY_05973"; transcript_id "RvY_05973.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7626640 7626751 . + . gene_id "RvY_05973"; transcript_id "RvY_05973.1"; Scaffold002 rebuild exon 7626822 7627195 . + . gene_id "RvY_05973"; transcript_id "RvY_05973.1"; Scaffold002 rebuild exon 7627271 7627423 . + . gene_id "RvY_05973"; transcript_id "RvY_05973.1"; Scaffold002 rebuild exon 7627654 7628025 . + . gene_id "RvY_05973"; transcript_id "RvY_05973.1"; Scaffold002 rebuild transcript 7628596 7630795 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold002 rebuild exon 7628596 7628766 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7628841 7629113 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7629174 7629245 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7629310 7629417 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7629487 7629670 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7629744 7629773 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7629944 7630014 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7630094 7630481 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild exon 7630563 7630795 . + . gene_id "RvY_05974"; transcript_id "RvY_05974.1"; Scaffold002 rebuild transcript 7630952 7631158 . - . gene_id "RvY_05975"; transcript_id "RvY_05975.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7630952 7631158 . - . gene_id "RvY_05975"; transcript_id "RvY_05975.1"; Scaffold002 rebuild transcript 7631183 7631965 . - . gene_id "RvY_05976"; transcript_id "RvY_05976.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7631183 7631637 . - . gene_id "RvY_05976"; transcript_id "RvY_05976.1"; Scaffold002 rebuild exon 7631875 7631965 . - . gene_id "RvY_05976"; transcript_id "RvY_05976.1"; Scaffold002 rebuild transcript 7631742 7632539 . + . gene_id "RvY_05977"; transcript_id "RvY_05977.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7631742 7631749 . + . gene_id "RvY_05977"; transcript_id "RvY_05977.1"; Scaffold002 rebuild exon 7631865 7632029 . + . gene_id "RvY_05977"; transcript_id "RvY_05977.1"; Scaffold002 rebuild exon 7632407 7632539 . + . gene_id "RvY_05977"; transcript_id "RvY_05977.1"; Scaffold002 rebuild transcript 7633192 7634457 . + . gene_id "RvY_05978"; transcript_id "RvY_05978.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7633192 7633318 . + . gene_id "RvY_05978"; transcript_id "RvY_05978.1"; Scaffold002 rebuild exon 7634318 7634457 . + . gene_id "RvY_05978"; transcript_id "RvY_05978.1"; Scaffold002 rebuild transcript 7634558 7637956 . + . gene_id "RvY_05979"; transcript_id "RvY_05979.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7634558 7634562 . + . gene_id "RvY_05979"; transcript_id "RvY_05979.1"; Scaffold002 rebuild exon 7634657 7634777 . + . gene_id "RvY_05979"; transcript_id "RvY_05979.1"; Scaffold002 rebuild exon 7637716 7637830 . + . gene_id "RvY_05979"; transcript_id "RvY_05979.1"; Scaffold002 rebuild exon 7637904 7637956 . + . gene_id "RvY_05979"; transcript_id "RvY_05979.1"; Scaffold002 rebuild transcript 7638092 7638811 . + . gene_id "RvY_05980"; transcript_id "RvY_05980.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7638092 7638135 . + . gene_id "RvY_05980"; transcript_id "RvY_05980.1"; Scaffold002 rebuild exon 7638643 7638811 . + . gene_id "RvY_05980"; transcript_id "RvY_05980.1"; Scaffold002 rebuild transcript 7638283 7639181 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.1"; gene_name "ureC"; annotation "hypothetical protein."; CDD "urease subunit alpha; Reviewed"; EC "(2)EC3.5.1.5"; similar_genes "(2)URE1_BRAJA(e-value:2.0e-07;bit-score:54.0)"; Scaffold002 rebuild exon 7638283 7638512 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.1"; Scaffold002 rebuild exon 7638636 7638747 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.1"; Scaffold002 rebuild exon 7638822 7639084 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.1"; Scaffold002 rebuild exon 7639160 7639181 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.1"; Scaffold002 rebuild transcript 7638283 7639024 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.2"; gene_name "ureC"; annotation "hypothetical protein."; CDD "urease subunit alpha; Reviewed"; EC "(2)EC3.5.1.5"; similar_genes "(2)URE1_BRAJA(e-value:2.0e-07;bit-score:54.0)"; Scaffold002 rebuild exon 7638283 7638512 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.2"; Scaffold002 rebuild exon 7638636 7638747 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.2"; Scaffold002 rebuild exon 7638822 7638947 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.2"; Scaffold002 rebuild exon 7639004 7639024 . - . gene_id "RvY_05981"; transcript_id "RvY_05981.2"; Scaffold002 rebuild transcript 7639923 7640445 . - . gene_id "RvY_05982"; transcript_id "RvY_05982.1"; gene_name "ureC"; annotation "hypothetical protein."; CDD "urease subunit alpha; Reviewed"; EC "EC3.5.1.5"; similar_genes "URE1_ANASP(e-value:3.6e-13;bit-score:73.0)"; Scaffold002 rebuild exon 7639923 7640093 . - . gene_id "RvY_05982"; transcript_id "RvY_05982.1"; Scaffold002 rebuild exon 7640169 7640250 . - . gene_id "RvY_05982"; transcript_id "RvY_05982.1"; Scaffold002 rebuild exon 7640318 7640445 . - . gene_id "RvY_05982"; transcript_id "RvY_05982.1"; Scaffold002 rebuild transcript 7640462 7641833 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; gene_name "URE"; annotation "putative Urease"; Pfam "[Amidohydro_5] Amidohydrolase|[Urease_alpha] Urease alpha-subunit, N-terminal domain|[Amidohydro_1] Amidohydrolase family|[Urease_beta] Urease beta subunit"; CDD "urease subunit alpha; Reviewed"; EC "EC3.5.1.5"; KO "K01427"; similar_genes "UREA_CANEN(e-value:2.5e-35;bit-score:146.0)"; Scaffold002 rebuild exon 7640462 7640471 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; Scaffold002 rebuild exon 7640599 7640654 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; Scaffold002 rebuild exon 7640730 7640945 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; Scaffold002 rebuild exon 7641014 7641157 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; Scaffold002 rebuild exon 7641380 7641580 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; Scaffold002 rebuild exon 7641672 7641833 . - . gene_id "RvY_05983"; transcript_id "RvY_05983.1"; Scaffold002 rebuild transcript 7643583 7644751 . + . gene_id "RvY_05984"; transcript_id "RvY_05984.1"; gene_name "ureG"; annotation "putative Uncharacterized urease accessory protein ureG-like"; Pfam "[cobW] CobW/HypB/UreG, nucleotide-binding domain"; CDD "urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel."; KO "K03189"; similar_genes "UREG_SCHPO(e-value:2.5e-37;bit-score:153.0)"; Scaffold002 rebuild exon 7643583 7643672 . + . gene_id "RvY_05984"; transcript_id "RvY_05984.1"; Scaffold002 rebuild exon 7643760 7643813 . + . gene_id "RvY_05984"; transcript_id "RvY_05984.1"; Scaffold002 rebuild exon 7643910 7644056 . + . gene_id "RvY_05984"; transcript_id "RvY_05984.1"; Scaffold002 rebuild exon 7644121 7644268 . + . gene_id "RvY_05984"; transcript_id "RvY_05984.1"; Scaffold002 rebuild exon 7644468 7644751 . + . gene_id "RvY_05984"; transcript_id "RvY_05984.1"; Scaffold002 rebuild transcript 7644814 7649601 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; gene_name "IDE"; annotation "Insulin-degrading enzyme"; Pfam "[Peptidase_M16_C] Peptidase M16 inactive domain|[Peptidase_M16] Insulinase (Peptidase family M16)"; CDD "Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.56"; KO "K01408"; similar_genes "IDE_MOUSE(e-value:5.4e-120;bit-score:428.0)"; Scaffold002 rebuild exon 7644814 7645182 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7645391 7645600 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7645671 7645795 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7645987 7646154 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7646213 7646528 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7646713 7646823 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7646882 7647136 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7647211 7647409 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7647494 7647597 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7647684 7647856 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7647923 7648015 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7648073 7648348 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7648415 7648732 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7648820 7648898 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7649036 7649139 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7649247 7649422 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild exon 7649534 7649601 . - . gene_id "RvY_05985"; transcript_id "RvY_05985.1"; Scaffold002 rebuild transcript 7650052 7651356 . + . gene_id "RvY_05986"; transcript_id "RvY_05986.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7650052 7651356 . + . gene_id "RvY_05986"; transcript_id "RvY_05986.1"; Scaffold002 rebuild transcript 7651686 7653716 . - . gene_id "RvY_05987"; transcript_id "RvY_05987.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7651686 7651886 . - . gene_id "RvY_05987"; transcript_id "RvY_05987.1"; Scaffold002 rebuild exon 7653615 7653716 . - . gene_id "RvY_05987"; transcript_id "RvY_05987.1"; Scaffold002 rebuild transcript 7652911 7653246 . + . gene_id "RvY_05988"; transcript_id "RvY_05988.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7652911 7653246 . + . gene_id "RvY_05988"; transcript_id "RvY_05988.1"; Scaffold002 rebuild transcript 7654901 7657050 . + . gene_id "RvY_05989"; transcript_id "RvY_05989.1"; gene_name "PX_SNX27"; annotation "putative Sorting nexin-27"; Pfam "[PX]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface expression and increasing degradation. SNX27 also associates with 5-hydroxytryptamine type 4 receptor (5-HT4R), cytohesin associated scaffolding protein (CASP), and diacylglycerol kinase zeta, and may play a role in their intracellular trafficking and endocytic recycling. The SNX27 PX domain preferentially binds to phosphatidylinositol-3-phosphate (PI3P) and is important for targeting to the early endosome."; similar_genes "SNX27_BOVIN(e-value:3.6e-32;bit-score:136.0)"; Scaffold002 rebuild exon 7654901 7655147 . + . gene_id "RvY_05989"; transcript_id "RvY_05989.1"; Scaffold002 rebuild exon 7655324 7655581 . + . gene_id "RvY_05989"; transcript_id "RvY_05989.1"; Scaffold002 rebuild exon 7655906 7657050 . + . gene_id "RvY_05989"; transcript_id "RvY_05989.1"; Scaffold002 rebuild transcript 7657893 7659815 . + . gene_id "RvY_05990"; transcript_id "RvY_05990.1"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold002 rebuild exon 7657893 7658075 . + . gene_id "RvY_05990"; transcript_id "RvY_05990.1"; Scaffold002 rebuild exon 7658468 7658834 . + . gene_id "RvY_05990"; transcript_id "RvY_05990.1"; Scaffold002 rebuild exon 7659175 7659815 . + . gene_id "RvY_05990"; transcript_id "RvY_05990.1"; Scaffold002 rebuild transcript 7660152 7662132 . - . gene_id "RvY_05991"; transcript_id "RvY_05991.1"; gene_name "K00654"; annotation "Serine palmitoyltransferase 2"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life."; EC "EC2.3.1.50"; KO "K00654"; similar_genes "SPTC2_MOUSE(e-value:8.6e-74;bit-score:274.0)"; Scaffold002 rebuild exon 7660152 7660916 . - . gene_id "RvY_05991"; transcript_id "RvY_05991.1"; Scaffold002 rebuild exon 7661027 7661699 . - . gene_id "RvY_05991"; transcript_id "RvY_05991.1"; Scaffold002 rebuild exon 7661756 7662132 . - . gene_id "RvY_05991"; transcript_id "RvY_05991.1"; Scaffold002 rebuild transcript 7663632 7664066 . + . gene_id "RvY_05992"; transcript_id "RvY_05992.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7663632 7663731 . + . gene_id "RvY_05992"; transcript_id "RvY_05992.1"; Scaffold002 rebuild exon 7663822 7664066 . + . gene_id "RvY_05992"; transcript_id "RvY_05992.1"; Scaffold002 rebuild transcript 7666317 7667546 . + . gene_id "RvY_05993"; transcript_id "RvY_05993.1"; annotation "hypothetical protein."; Pfam "[Rpr2] RNAse P Rpr2/Rpp21/SNM1 subunit domain"; Scaffold002 rebuild exon 7666317 7666457 . + . gene_id "RvY_05993"; transcript_id "RvY_05993.1"; Scaffold002 rebuild exon 7667009 7667262 . + . gene_id "RvY_05993"; transcript_id "RvY_05993.1"; Scaffold002 rebuild exon 7667339 7667546 . + . gene_id "RvY_05993"; transcript_id "RvY_05993.1"; Scaffold002 rebuild transcript 7667680 7668345 . - . gene_id "RvY_05994"; transcript_id "RvY_05994.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7667680 7668345 . - . gene_id "RvY_05994"; transcript_id "RvY_05994.1"; Scaffold002 rebuild transcript 7669223 7670230 . - . gene_id "RvY_05995"; transcript_id "RvY_05995.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7669223 7670034 . - . gene_id "RvY_05995"; transcript_id "RvY_05995.1"; Scaffold002 rebuild exon 7670107 7670230 . - . gene_id "RvY_05995"; transcript_id "RvY_05995.1"; Scaffold002 rebuild transcript 7670727 7671638 . - . gene_id "RvY_05996"; transcript_id "RvY_05996.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7670727 7671296 . - . gene_id "RvY_05996"; transcript_id "RvY_05996.1"; Scaffold002 rebuild exon 7671477 7671638 . - . gene_id "RvY_05996"; transcript_id "RvY_05996.1"; Scaffold002 rebuild transcript 7672321 7672617 . - . gene_id "RvY_05997"; transcript_id "RvY_05997.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7672321 7672617 . - . gene_id "RvY_05997"; transcript_id "RvY_05997.1"; Scaffold002 rebuild transcript 7673662 7681076 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_11] TPR repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold002 rebuild exon 7673662 7674027 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7674356 7674620 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7674682 7674962 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7675207 7675417 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7675487 7675971 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7676049 7676210 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7676467 7676901 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7676961 7677171 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7677365 7677451 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7677540 7677710 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7677772 7678105 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7678347 7678585 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7678655 7678840 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7678914 7679197 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7679263 7679484 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7679551 7680191 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild exon 7680374 7681076 . - . gene_id "RvY_05998"; transcript_id "RvY_05998.1"; Scaffold002 rebuild transcript 7683035 7683454 . + . gene_id "RvY_05999"; transcript_id "RvY_05999.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7683035 7683454 . + . gene_id "RvY_05999"; transcript_id "RvY_05999.1"; Scaffold002 rebuild transcript 7683681 7683944 . + . gene_id "RvY_06000"; transcript_id "RvY_06000.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7683681 7683944 . + . gene_id "RvY_06000"; transcript_id "RvY_06000.1"; Scaffold002 rebuild transcript 7686520 7687689 . + . gene_id "RvY_06001"; transcript_id "RvY_06001.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7686520 7686534 . + . gene_id "RvY_06001"; transcript_id "RvY_06001.1"; Scaffold002 rebuild exon 7687477 7687689 . + . gene_id "RvY_06001"; transcript_id "RvY_06001.1"; Scaffold002 rebuild transcript 7687735 7687932 . + . gene_id "RvY_06002"; transcript_id "RvY_06002.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7687735 7687932 . + . gene_id "RvY_06002"; transcript_id "RvY_06002.1"; Scaffold002 rebuild transcript 7688034 7688354 . - . gene_id "RvY_06003"; transcript_id "RvY_06003.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7688034 7688354 . - . gene_id "RvY_06003"; transcript_id "RvY_06003.1"; Scaffold002 rebuild transcript 7689449 7691165 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; gene_name "K08076"; annotation "astacin [EC:3.4.24.21]"; Pfam "[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.21"; KO "K08076"; similar_genes "NAS13_CAEEL(e-value:2.6e-09;bit-score:60.0)"; Scaffold002 rebuild exon 7689449 7689566 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7689672 7689790 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7689856 7689915 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7689998 7690082 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7690143 7690263 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7690344 7690413 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7690505 7690613 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7690699 7690769 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild exon 7690839 7691165 . + . gene_id "RvY_06004"; transcript_id "RvY_06004.1"; Scaffold002 rebuild transcript 7691302 7693082 . - . gene_id "RvY_06005"; transcript_id "RvY_06005.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7691302 7691413 . - . gene_id "RvY_06005"; transcript_id "RvY_06005.1"; Scaffold002 rebuild exon 7692976 7693082 . - . gene_id "RvY_06005"; transcript_id "RvY_06005.1"; Scaffold002 rebuild transcript 7693604 7696147 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; gene_name "PTPN1"; annotation "protein tyrosine phosphatase, non-receptor type 1 [EC:3.1.3.48]"; Pfam "[Y_phosphatase] Protein-tyrosine phosphatase"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K05696"; similar_genes "PTN1_HUMAN(e-value:1.6e-17;bit-score:87.0)"; Scaffold002 rebuild exon 7693604 7693735 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild exon 7693825 7693927 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild exon 7694112 7694221 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild exon 7694356 7694454 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild exon 7694806 7695201 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild exon 7695364 7695555 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild exon 7695776 7696147 . + . gene_id "RvY_06006"; transcript_id "RvY_06006.1"; Scaffold002 rebuild transcript 7697043 7697996 . - . gene_id "RvY_06007"; transcript_id "RvY_06007.1"; gene_name "RHO"; annotation "Ras-like GTP-binding protein Rho1"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms."; similar_genes "RHO1_DROME(e-value:2.3e-63;bit-score:240.0)"; Scaffold002 rebuild exon 7697043 7697182 . - . gene_id "RvY_06007"; transcript_id "RvY_06007.1"; Scaffold002 rebuild exon 7697250 7697295 . - . gene_id "RvY_06007"; transcript_id "RvY_06007.1"; Scaffold002 rebuild exon 7697385 7697486 . - . gene_id "RvY_06007"; transcript_id "RvY_06007.1"; Scaffold002 rebuild exon 7697597 7697746 . - . gene_id "RvY_06007"; transcript_id "RvY_06007.1"; Scaffold002 rebuild exon 7697817 7697996 . - . gene_id "RvY_06007"; transcript_id "RvY_06007.1"; Scaffold002 rebuild transcript 7699396 7700463 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; gene_name "AIR1"; annotation "hypothetical protein."; Pfam "[zf-CCHC] Zinc knuckle|[zf-CCHC_3] Zinc knuckle"; CDD "Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]"; similar_genes "GRP2B_ARATH(e-value:9.1e-12;bit-score:68.0)"; Scaffold002 rebuild exon 7699396 7699399 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; Scaffold002 rebuild exon 7699476 7699517 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; Scaffold002 rebuild exon 7699658 7699780 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; Scaffold002 rebuild exon 7699882 7699964 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; Scaffold002 rebuild exon 7700052 7700228 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; Scaffold002 rebuild exon 7700422 7700463 . + . gene_id "RvY_06008"; transcript_id "RvY_06008.1"; Scaffold002 rebuild transcript 7702594 7705056 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; gene_name "(1)Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A|(1)[Trypsin]"; CDD "(1)Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 7702594 7702645 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild exon 7702708 7702839 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild exon 7702928 7703163 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild exon 7703250 7703299 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild exon 7703545 7704156 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild exon 7704359 7704651 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild exon 7704707 7705056 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.1"; Scaffold002 rebuild transcript 7701754 7702931 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.2"; gene_name "(1)Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A|(1)[Trypsin]"; CDD "(1)Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 7701754 7702114 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.2"; Scaffold002 rebuild exon 7702355 7702645 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.2"; Scaffold002 rebuild exon 7702708 7702931 . + . gene_id "RvY_06009"; transcript_id "RvY_06009.2"; Scaffold002 rebuild transcript 7706909 7718300 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; annotation "putative MKL/myocardin-like protein 2"; Pfam "[SAP]|[RPEL] RPEL repeat"; similar_genes "MKL2_MOUSE(e-value:2.7e-28;bit-score:123.0)"; Scaffold002 rebuild exon 7706909 7707810 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7708052 7708526 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7708720 7709165 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7709424 7710602 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7710974 7711117 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7711556 7711747 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7712515 7712590 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7712820 7712875 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7717956 7718021 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild exon 7718093 7718300 . - . gene_id "RvY_06010"; transcript_id "RvY_06010.1"; Scaffold002 rebuild transcript 7721380 7722435 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.1"; gene_name "(1,2)PTZ00146"; annotation "hypothetical protein."; CDD "(1,2)fibrillarin; Provisional"; similar_genes "(1,2)GRP2_PHAVU(e-value:1.9e-16;bit-score:84.0)(3)GRP2_SORBI(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 7721380 7721425 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.1"; Scaffold002 rebuild exon 7721512 7721782 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.1"; Scaffold002 rebuild exon 7722036 7722435 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.1"; Scaffold002 rebuild transcript 7720556 7722435 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.2"; gene_name "(1,2)PTZ00146"; annotation "hypothetical protein."; CDD "(1,2)fibrillarin; Provisional"; similar_genes "(1,2)GRP2_PHAVU(e-value:1.9e-16;bit-score:84.0)(3)GRP2_SORBI(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 7720556 7720589 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.2"; Scaffold002 rebuild exon 7721512 7721782 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.2"; Scaffold002 rebuild exon 7722036 7722435 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.2"; Scaffold002 rebuild transcript 7722076 7722435 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.3"; gene_name "(1,2)PTZ00146"; annotation "hypothetical protein."; CDD "(1,2)fibrillarin; Provisional"; similar_genes "(1,2)GRP2_PHAVU(e-value:1.9e-16;bit-score:84.0)(3)GRP2_SORBI(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 7722076 7722435 . + . gene_id "RvY_06011"; transcript_id "RvY_06011.3"; Scaffold002 rebuild transcript 7723734 7724868 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; gene_name "UBE2D_E"; annotation "Ubiquitin-conjugating enzyme E2-24 kDa"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this Scaffold002 rebuild exon 7723734 7723987 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; Scaffold002 rebuild exon 7724124 7724174 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; Scaffold002 rebuild exon 7724266 7724401 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; Scaffold002 rebuild exon 7724485 7724556 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; Scaffold002 rebuild exon 7724612 7724687 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; Scaffold002 rebuild exon 7724771 7724868 . + . gene_id "RvY_06012"; transcript_id "RvY_06012.1"; Scaffold002 rebuild transcript 7725771 7725992 . - . gene_id "RvY_06013"; transcript_id "RvY_06013.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7725771 7725992 . - . gene_id "RvY_06013"; transcript_id "RvY_06013.1"; Scaffold002 rebuild transcript 7726536 7726862 . + . gene_id "RvY_06014"; transcript_id "RvY_06014.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7726536 7726564 . + . gene_id "RvY_06014"; transcript_id "RvY_06014.1"; Scaffold002 rebuild exon 7726709 7726862 . + . gene_id "RvY_06014"; transcript_id "RvY_06014.1"; Scaffold002 rebuild transcript 7728872 7730086 . + . gene_id "RvY_06015"; transcript_id "RvY_06015.1"; gene_name "FRQ1"; annotation "putative Neuronal calcium sensor 2"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "NCS2_CAEEL(e-value:1.2e-26;bit-score:118.0)"; Scaffold002 rebuild exon 7728872 7729172 . + . gene_id "RvY_06015"; transcript_id "RvY_06015.1"; Scaffold002 rebuild exon 7729460 7729743 . + . gene_id "RvY_06015"; transcript_id "RvY_06015.1"; Scaffold002 rebuild exon 7729875 7729937 . + . gene_id "RvY_06015"; transcript_id "RvY_06015.1"; Scaffold002 rebuild exon 7730033 7730086 . + . gene_id "RvY_06015"; transcript_id "RvY_06015.1"; Scaffold002 rebuild transcript 7730336 7732590 . - . gene_id "RvY_06016"; transcript_id "RvY_06016.1"; gene_name "phrB"; annotation "Deoxyribodipyrimidine photo-lyase"; Pfam "[DNA_photolyase] DNA photolyase|[FAD_binding_7] FAD binding domain of DNA photolyase"; CDD "photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC4.1.99.3"; KO "K01669"; similar_genes "PHR_POTTR(e-value:7.3e-71;bit-score:264.0)"; Scaffold002 rebuild exon 7730336 7730899 . - . gene_id "RvY_06016"; transcript_id "RvY_06016.1"; Scaffold002 rebuild exon 7731047 7731295 . - . gene_id "RvY_06016"; transcript_id "RvY_06016.1"; Scaffold002 rebuild exon 7731513 7732003 . - . gene_id "RvY_06016"; transcript_id "RvY_06016.1"; Scaffold002 rebuild exon 7732078 7732460 . - . gene_id "RvY_06016"; transcript_id "RvY_06016.1"; Scaffold002 rebuild exon 7732535 7732590 . - . gene_id "RvY_06016"; transcript_id "RvY_06016.1"; Scaffold002 rebuild transcript 7733938 7734835 . - . gene_id "RvY_06017"; transcript_id "RvY_06017.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7733938 7734051 . - . gene_id "RvY_06017"; transcript_id "RvY_06017.1"; Scaffold002 rebuild exon 7734782 7734835 . - . gene_id "RvY_06017"; transcript_id "RvY_06017.1"; Scaffold002 rebuild transcript 7735691 7741453 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[LRR_5] Leucine rich repeats (6 copies)|[Ig_2] Immunoglobulin domain|[LRR_8] Leucine rich repeat|[Herpes_gE] Alphaherpesvirus glycoprotein E|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; Scaffold002 rebuild exon 7735691 7736010 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7737220 7737432 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7737877 7738173 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7738233 7738379 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7738457 7738568 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7738854 7740210 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7740791 7740946 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild exon 7741275 7741453 . + . gene_id "RvY_06018"; transcript_id "RvY_06018.1"; Scaffold002 rebuild transcript 7743380 7747690 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; gene_name "NUMBL"; annotation "Protein numb"; Pfam "[NumbF] NUMB domain|[PID] Phosphotyrosine interaction domain (PTB/PID)"; CDD "Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; KO "K06057"; similar_genes "NUMB_DROME(e-value:2.0e-62;bit-score:236.0)"; Scaffold002 rebuild exon 7743380 7743930 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild exon 7744207 7744759 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild exon 7745200 7745340 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild exon 7745466 7745543 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild exon 7745830 7745901 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild exon 7746647 7746807 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild exon 7747678 7747690 . - . gene_id "RvY_06019"; transcript_id "RvY_06019.1"; Scaffold002 rebuild transcript 7750160 7757086 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; gene_name "mam_aldehyde_ox"; annotation "hypothetical protein."; Pfam "[Fer2] 2Fe-2S iron-sulfur cluster binding domain|[Ald_Xan_dh_C2] Molybdopterin-binding domain of aldehyde dehydrogenase|[Ald_Xan_dh_C] Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain|[CO_deh_flav_C] CO dehydrogenase flavoprotein C-terminal domain|[FAD_binding_5] FAD binding domain in molybdopterin dehydrogenase|[Fer2_2] [2Fe-2S] binding domain"; CDD "aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase."; EC "EC1.17.1.4"; similar_genes "XDH_BOVIN(e-value:8.1e-15;bit-score:78.0)"; Scaffold002 rebuild exon 7750160 7750208 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7750321 7750490 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7750556 7750713 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7750782 7750864 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7750960 7751030 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7751089 7751538 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7751613 7751638 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7751878 7751954 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7752025 7752173 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7752260 7752440 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7752515 7752615 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7752828 7753004 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7753074 7753320 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7753389 7753615 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7753709 7753818 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7753904 7753944 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7754022 7754125 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7754189 7754342 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7754423 7754503 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7754788 7755159 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7755366 7755508 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7755592 7755722 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7755804 7755955 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7756342 7756545 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7756615 7756725 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild exon 7756971 7757086 . + . gene_id "RvY_06020"; transcript_id "RvY_06020.1"; Scaffold002 rebuild transcript 7757257 7758546 . - . gene_id "RvY_06021"; transcript_id "RvY_06021.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7757257 7757843 . - . gene_id "RvY_06021"; transcript_id "RvY_06021.1"; Scaffold002 rebuild exon 7758234 7758546 . - . gene_id "RvY_06021"; transcript_id "RvY_06021.1"; Scaffold002 rebuild transcript 7758635 7758994 . - . gene_id "RvY_06022"; transcript_id "RvY_06022.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7758635 7758994 . - . gene_id "RvY_06022"; transcript_id "RvY_06022.1"; Scaffold002 rebuild transcript 7759339 7760438 . + . gene_id "RvY_06023"; transcript_id "RvY_06023.1"; annotation "hypothetical protein."; similar_genes "(1)GRP1_PETHY(e-value:1.0e-08;bit-score:58.0)"; Scaffold002 rebuild exon 7759339 7759369 . + . gene_id "RvY_06023"; transcript_id "RvY_06023.1"; Scaffold002 rebuild exon 7759459 7760438 . + . gene_id "RvY_06023"; transcript_id "RvY_06023.1"; Scaffold002 rebuild transcript 7759641 7760438 . + . gene_id "RvY_06023"; transcript_id "RvY_06023.2"; annotation "hypothetical protein."; similar_genes "(1)GRP1_PETHY(e-value:1.0e-08;bit-score:58.0)"; Scaffold002 rebuild exon 7759641 7760217 . + . gene_id "RvY_06023"; transcript_id "RvY_06023.2"; Scaffold002 rebuild exon 7760350 7760438 . + . gene_id "RvY_06023"; transcript_id "RvY_06023.2"; Scaffold002 rebuild transcript 7760977 7761168 . + . gene_id "RvY_06024"; transcript_id "RvY_06024.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7760977 7761168 . + . gene_id "RvY_06024"; transcript_id "RvY_06024.1"; Scaffold002 rebuild transcript 7761842 7762316 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7761842 7761926 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.1"; Scaffold002 rebuild exon 7762016 7762132 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.1"; Scaffold002 rebuild exon 7762198 7762316 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.1"; Scaffold002 rebuild transcript 7762091 7762446 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7762091 7762132 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.2"; Scaffold002 rebuild exon 7762198 7762446 . + . gene_id "RvY_06025"; transcript_id "RvY_06025.2"; Scaffold002 rebuild transcript 7763689 7764628 . - . gene_id "RvY_06026"; transcript_id "RvY_06026.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7763689 7763772 . - . gene_id "RvY_06026"; transcript_id "RvY_06026.1"; Scaffold002 rebuild exon 7764056 7764628 . - . gene_id "RvY_06026"; transcript_id "RvY_06026.1"; Scaffold002 rebuild transcript 7764723 7765175 . - . gene_id "RvY_06027"; transcript_id "RvY_06027.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7764723 7765175 . - . gene_id "RvY_06027"; transcript_id "RvY_06027.1"; Scaffold002 rebuild transcript 7764723 7765091 . - . gene_id "RvY_06027"; transcript_id "RvY_06027.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7764723 7765091 . - . gene_id "RvY_06027"; transcript_id "RvY_06027.2"; Scaffold002 rebuild transcript 7765915 7766838 . - . gene_id "RvY_06028"; transcript_id "RvY_06028.1"; annotation "hypothetical protein."; similar_genes "SER1_GALME(e-value:1.3e-06;bit-score:51.0)"; Scaffold002 rebuild exon 7765915 7766838 . - . gene_id "RvY_06028"; transcript_id "RvY_06028.1"; Scaffold002 rebuild transcript 7767435 7767869 . + . gene_id "RvY_06029"; transcript_id "RvY_06029.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7767435 7767623 . + . gene_id "RvY_06029"; transcript_id "RvY_06029.1"; Scaffold002 rebuild exon 7767768 7767869 . + . gene_id "RvY_06029"; transcript_id "RvY_06029.1"; Scaffold002 rebuild transcript 7768440 7769033 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7768440 7768671 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.1"; Scaffold002 rebuild exon 7768768 7769033 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.1"; Scaffold002 rebuild transcript 7768440 7769241 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7768440 7768671 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.2"; Scaffold002 rebuild exon 7768768 7769005 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.2"; Scaffold002 rebuild exon 7769235 7769241 . - . gene_id "RvY_06030"; transcript_id "RvY_06030.2"; Scaffold002 rebuild transcript 7769249 7769714 . - . gene_id "RvY_06031"; transcript_id "RvY_06031.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold002 rebuild exon 7769249 7769546 . - . gene_id "RvY_06031"; transcript_id "RvY_06031.1"; Scaffold002 rebuild exon 7769614 7769714 . - . gene_id "RvY_06031"; transcript_id "RvY_06031.1"; Scaffold002 rebuild transcript 7770139 7770705 . + . gene_id "RvY_06032"; transcript_id "RvY_06032.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7770139 7770705 . + . gene_id "RvY_06032"; transcript_id "RvY_06032.1"; Scaffold002 rebuild transcript 7772095 7772568 . + . gene_id "RvY_06033"; transcript_id "RvY_06033.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7772095 7772568 . + . gene_id "RvY_06033"; transcript_id "RvY_06033.1"; Scaffold002 rebuild transcript 7772663 7773201 . - . gene_id "RvY_06034"; transcript_id "RvY_06034.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7772663 7772678 . - . gene_id "RvY_06034"; transcript_id "RvY_06034.1"; Scaffold002 rebuild exon 7772783 7773201 . - . gene_id "RvY_06034"; transcript_id "RvY_06034.1"; Scaffold002 rebuild transcript 7772779 7773201 . - . gene_id "RvY_06034"; transcript_id "RvY_06034.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7772779 7773201 . - . gene_id "RvY_06034"; transcript_id "RvY_06034.2"; Scaffold002 rebuild transcript 7773633 7774187 . + . gene_id "RvY_06035"; transcript_id "RvY_06035.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7773633 7773895 . + . gene_id "RvY_06035"; transcript_id "RvY_06035.1"; Scaffold002 rebuild exon 7773983 7774187 . + . gene_id "RvY_06035"; transcript_id "RvY_06035.1"; Scaffold002 rebuild transcript 7775145 7777157 . - . gene_id "RvY_06036"; transcript_id "RvY_06036.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7775145 7775366 . - . gene_id "RvY_06036"; transcript_id "RvY_06036.1"; Scaffold002 rebuild exon 7775453 7775562 . - . gene_id "RvY_06036"; transcript_id "RvY_06036.1"; Scaffold002 rebuild exon 7776247 7776387 . - . gene_id "RvY_06036"; transcript_id "RvY_06036.1"; Scaffold002 rebuild exon 7776870 7777040 . - . gene_id "RvY_06036"; transcript_id "RvY_06036.1"; Scaffold002 rebuild exon 7777130 7777157 . - . gene_id "RvY_06036"; transcript_id "RvY_06036.1"; Scaffold002 rebuild transcript 7779715 7780222 . + . gene_id "RvY_06037"; transcript_id "RvY_06037.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7779715 7779908 . + . gene_id "RvY_06037"; transcript_id "RvY_06037.1"; Scaffold002 rebuild exon 7780108 7780222 . + . gene_id "RvY_06037"; transcript_id "RvY_06037.1"; Scaffold002 rebuild transcript 7782706 7787356 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; annotation "Transmembrane and TPR repeat-containing protein CG4050"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[PMT_2] Dolichyl-phosphate-mannose-protein mannosyltransferase|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[NARP1] NMDA receptor-regulated protein 1|[TPR_6] Tetratricopeptide repeat|[DUF1736]|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; similar_genes "TMTC3_DROME(e-value:9.4e-69;bit-score:257.0)"; Scaffold002 rebuild exon 7782706 7782969 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7783026 7783162 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7783345 7783426 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7783522 7783609 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7783740 7783855 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7784075 7784786 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7785168 7785748 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7786544 7786617 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7786688 7786913 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7786974 7787057 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild exon 7787123 7787356 . + . gene_id "RvY_06038"; transcript_id "RvY_06038.1"; Scaffold002 rebuild transcript 7787643 7787834 . - . gene_id "RvY_06039"; transcript_id "RvY_06039.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7787643 7787834 . - . gene_id "RvY_06039"; transcript_id "RvY_06039.1"; Scaffold002 rebuild transcript 7788336 7788542 . - . gene_id "RvY_06040"; transcript_id "RvY_06040.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7788336 7788542 . - . gene_id "RvY_06040"; transcript_id "RvY_06040.1"; Scaffold002 rebuild transcript 7789739 7790008 . + . gene_id "RvY_06041"; transcript_id "RvY_06041.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7789739 7790008 . + . gene_id "RvY_06041"; transcript_id "RvY_06041.1"; Scaffold002 rebuild transcript 7791773 7793053 . + . gene_id "RvY_06042"; transcript_id "RvY_06042.1"; gene_name "GRPE"; annotation "molecular chaperone GrpE"; Pfam "[GrpE]"; KO "K03687"; similar_genes "GRPE_DEBHA(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 7791773 7791936 . + . gene_id "RvY_06042"; transcript_id "RvY_06042.1"; Scaffold002 rebuild exon 7792032 7792284 . + . gene_id "RvY_06042"; transcript_id "RvY_06042.1"; Scaffold002 rebuild exon 7792622 7793053 . + . gene_id "RvY_06042"; transcript_id "RvY_06042.1"; Scaffold002 rebuild transcript 7793184 7798095 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; similar_genes "CC147_HUMAN(e-value:1.9e-22;bit-score:104.0)"; Scaffold002 rebuild exon 7793184 7793585 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild exon 7793777 7794635 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild exon 7794812 7795536 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild exon 7795665 7795859 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild exon 7795942 7796098 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild exon 7796153 7796724 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild exon 7798057 7798095 . - . gene_id "RvY_06043"; transcript_id "RvY_06043.1"; Scaffold002 rebuild transcript 7798376 7800319 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; gene_name "K00485"; annotation "dimethylaniline monooxygenase (N-oxide forming) [EC:1.14.13.8]"; Pfam "[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[FMO-like] Flavin-binding monooxygenase-like|[K_oxygenase] L-lysine 6-monooxygenase (NADPH-requiring)|[NAD_binding_9] FAD-NAD(P)-binding"; CDD "Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase."; EC "EC1.14.13.8"; KO "K00485"; Scaffold002 rebuild exon 7798376 7798608 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; Scaffold002 rebuild exon 7798689 7798830 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; Scaffold002 rebuild exon 7799039 7799178 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; Scaffold002 rebuild exon 7799261 7799438 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; Scaffold002 rebuild exon 7799503 7799822 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; Scaffold002 rebuild exon 7799986 7800319 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.1"; Scaffold002 rebuild transcript 7798376 7799489 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.2"; gene_name "K00485"; annotation "dimethylaniline monooxygenase (N-oxide forming) [EC:1.14.13.8]"; Pfam "[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[FMO-like] Flavin-binding monooxygenase-like|[K_oxygenase] L-lysine 6-monooxygenase (NADPH-requiring)|[NAD_binding_9] FAD-NAD(P)-binding"; CDD "Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase."; EC "EC1.14.13.8"; KO "K00485"; Scaffold002 rebuild exon 7798376 7798608 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.2"; Scaffold002 rebuild exon 7798689 7798830 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.2"; Scaffold002 rebuild exon 7799039 7799178 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.2"; Scaffold002 rebuild exon 7799261 7799489 . + . gene_id "RvY_06044"; transcript_id "RvY_06044.2"; Scaffold002 rebuild transcript 7800855 7804234 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold002 rebuild exon 7800855 7801038 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7801340 7801792 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7802080 7802231 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7802311 7802389 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7802462 7802551 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7802614 7802688 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7802758 7802962 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7803140 7803290 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7803346 7803533 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7803812 7804064 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild exon 7804127 7804234 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.1"; Scaffold002 rebuild transcript 7800855 7804094 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold002 rebuild exon 7800855 7801038 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7801340 7801792 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7802080 7802231 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7802311 7802389 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7802462 7802551 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7802614 7802688 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7802758 7802962 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7803140 7803290 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7803346 7803533 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild exon 7803812 7804094 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.2"; Scaffold002 rebuild transcript 7800855 7803808 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold002 rebuild exon 7800855 7801038 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7801340 7801792 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7802080 7802231 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7802311 7802389 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7802462 7802551 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7802614 7802688 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7802758 7802962 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7803140 7803290 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7803346 7803533 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild exon 7803799 7803808 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.3"; Scaffold002 rebuild transcript 7800855 7803537 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold002 rebuild exon 7800855 7801038 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7801340 7801792 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7802080 7802231 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7802311 7802389 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7802462 7802551 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7802614 7802688 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7802758 7802962 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7803140 7803290 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild exon 7803346 7803537 . + . gene_id "RvY_06045"; transcript_id "RvY_06045.4"; Scaffold002 rebuild transcript 7805244 7806758 . + . gene_id "RvY_06046"; transcript_id "RvY_06046.1"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat"; Scaffold002 rebuild exon 7805244 7805357 . + . gene_id "RvY_06046"; transcript_id "RvY_06046.1"; Scaffold002 rebuild exon 7805889 7806758 . + . gene_id "RvY_06046"; transcript_id "RvY_06046.1"; Scaffold002 rebuild transcript 7806808 7808196 . + . gene_id "RvY_06047"; transcript_id "RvY_06047.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold002 rebuild exon 7806808 7806908 . + . gene_id "RvY_06047"; transcript_id "RvY_06047.1"; Scaffold002 rebuild exon 7807308 7807864 . + . gene_id "RvY_06047"; transcript_id "RvY_06047.1"; Scaffold002 rebuild exon 7808177 7808196 . + . gene_id "RvY_06047"; transcript_id "RvY_06047.1"; Scaffold002 rebuild transcript 7809267 7809847 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7809267 7809602 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.1"; Scaffold002 rebuild exon 7809676 7809755 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.1"; Scaffold002 rebuild exon 7809841 7809847 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.1"; Scaffold002 rebuild transcript 7808704 7809316 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7808704 7808956 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.2"; Scaffold002 rebuild exon 7809225 7809316 . - . gene_id "RvY_06048"; transcript_id "RvY_06048.2"; Scaffold002 rebuild transcript 7810031 7810918 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.1"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold002 rebuild exon 7810031 7810261 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.1"; Scaffold002 rebuild exon 7810480 7810605 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.1"; Scaffold002 rebuild exon 7810691 7810918 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.1"; Scaffold002 rebuild transcript 7810134 7810736 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.2"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold002 rebuild exon 7810134 7810261 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.2"; Scaffold002 rebuild exon 7810480 7810605 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.2"; Scaffold002 rebuild exon 7810691 7810736 . - . gene_id "RvY_06049"; transcript_id "RvY_06049.2"; Scaffold002 rebuild transcript 7811650 7813235 . + . gene_id "RvY_06050"; transcript_id "RvY_06050.1"; gene_name "POFUT"; annotation "peptide-O-fucosyltransferase [EC:2.4.1.221]"; Pfam "[O-FucT] GDP-fucose protein O-fucosyltransferase"; EC "EC2.4.1.221"; KO "K03691"; similar_genes "OFUT1_DROME(e-value:1.6e-13;bit-score:74.0)"; Scaffold002 rebuild exon 7811650 7811809 . + . gene_id "RvY_06050"; transcript_id "RvY_06050.1"; Scaffold002 rebuild exon 7811922 7812028 . + . gene_id "RvY_06050"; transcript_id "RvY_06050.1"; Scaffold002 rebuild exon 7812091 7812368 . + . gene_id "RvY_06050"; transcript_id "RvY_06050.1"; Scaffold002 rebuild exon 7812617 7813235 . + . gene_id "RvY_06050"; transcript_id "RvY_06050.1"; Scaffold002 rebuild transcript 7813536 7818488 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; gene_name "HIRA"; annotation "putative Protein HIRA"; Pfam "[Hira] TUP1-like enhancer of split|[WD40] WD domain, G-beta repeat|[HIRA_B] HIRA B motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11293"; similar_genes "HIRA_HUMAN(e-value:1.4e-48;bit-score:190.0)"; Scaffold002 rebuild exon 7813536 7813682 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7813780 7813877 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7813953 7814110 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7814196 7814315 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7814389 7814565 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7814750 7814920 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7814994 7815304 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7815540 7815759 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7815829 7816065 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7816172 7816263 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7816350 7816544 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7816624 7816729 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7816832 7816899 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7817001 7817057 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7817136 7817348 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7817562 7817965 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7818022 7818117 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7818189 7818251 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild exon 7818326 7818488 . - . gene_id "RvY_06051"; transcript_id "RvY_06051.1"; Scaffold002 rebuild transcript 7819846 7820148 . - . gene_id "RvY_06052"; transcript_id "RvY_06052.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7819846 7820148 . - . gene_id "RvY_06052"; transcript_id "RvY_06052.1"; Scaffold002 rebuild transcript 7820919 7822687 . + . gene_id "RvY_06053"; transcript_id "RvY_06053.1"; annotation "hypothetical protein."; Pfam "[DUF3585]"; Scaffold002 rebuild exon 7820919 7820931 . + . gene_id "RvY_06053"; transcript_id "RvY_06053.1"; Scaffold002 rebuild exon 7821024 7821622 . + . gene_id "RvY_06053"; transcript_id "RvY_06053.1"; Scaffold002 rebuild exon 7821861 7822154 . + . gene_id "RvY_06053"; transcript_id "RvY_06053.1"; Scaffold002 rebuild exon 7822508 7822687 . + . gene_id "RvY_06053"; transcript_id "RvY_06053.1"; Scaffold002 rebuild transcript 7823250 7823741 . - . gene_id "RvY_06054"; transcript_id "RvY_06054.1"; gene_name "H3"; annotation "Histone H3"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "histone 3; Provisional"; KO "K11253"; similar_genes "H3_DROME(e-value:4.8e-70;bit-score:262.0)"; Scaffold002 rebuild exon 7823250 7823378 . - . gene_id "RvY_06054"; transcript_id "RvY_06054.1"; Scaffold002 rebuild exon 7823460 7823741 . - . gene_id "RvY_06054"; transcript_id "RvY_06054.1"; Scaffold002 rebuild transcript 7824423 7824848 . + . gene_id "RvY_06055"; transcript_id "RvY_06055.1"; gene_name "H4"; annotation "Histone H4"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "histone 4; Provisional"; KO "K11254"; similar_genes "H4_DROME(e-value:5.5e-52;bit-score:202.0)"; Scaffold002 rebuild exon 7824423 7824462 . + . gene_id "RvY_06055"; transcript_id "RvY_06055.1"; Scaffold002 rebuild exon 7824577 7824848 . + . gene_id "RvY_06055"; transcript_id "RvY_06055.1"; Scaffold002 rebuild transcript 7825868 7826336 . - . gene_id "RvY_06056"; transcript_id "RvY_06056.1"; gene_name "H2B"; annotation "putative Histone H2B"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H2B."; KO "K11252"; similar_genes "H2B_DROME(e-value:5.3e-48;bit-score:189.0)"; Scaffold002 rebuild exon 7825868 7826150 . - . gene_id "RvY_06056"; transcript_id "RvY_06056.1"; Scaffold002 rebuild exon 7826242 7826336 . - . gene_id "RvY_06056"; transcript_id "RvY_06056.1"; Scaffold002 rebuild transcript 7826767 7827342 . + . gene_id "RvY_06057"; transcript_id "RvY_06057.1"; gene_name "H2A"; annotation "Histone H2A"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone 2A."; KO "K11251"; similar_genes "H2A_DROME(e-value:1.7e-57;bit-score:220.0)"; Scaffold002 rebuild exon 7826767 7827042 . + . gene_id "RvY_06057"; transcript_id "RvY_06057.1"; Scaffold002 rebuild exon 7827130 7827342 . + . gene_id "RvY_06057"; transcript_id "RvY_06057.1"; Scaffold002 rebuild transcript 7827569 7829697 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; gene_name "cysK"; annotation "Cysteine synthase 1"; Pfam "[PALP] Pyridoxal-phosphate dependent enzyme"; CDD "cysteine synthase A; Provisional"; EC "EC2.5.1.47"; KO "K01738"; similar_genes "CYSK1_SCHPO(e-value:3.7e-70;bit-score:262.0)"; Scaffold002 rebuild exon 7827569 7827615 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7827798 7827978 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7828055 7828293 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7828443 7828701 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7828782 7828906 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7829091 7829186 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7829295 7829335 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild exon 7829453 7829697 . - . gene_id "RvY_06058"; transcript_id "RvY_06058.1"; Scaffold002 rebuild transcript 7833056 7839049 . + . gene_id "RvY_06059"; transcript_id "RvY_06059.1"; gene_name "DWB"; annotation "hypothetical protein."; Pfam "[MH2]"; CDD "Domain B in dwarfin family proteins."; Scaffold002 rebuild exon 7833056 7833725 . + . gene_id "RvY_06059"; transcript_id "RvY_06059.1"; Scaffold002 rebuild exon 7837736 7837867 . + . gene_id "RvY_06059"; transcript_id "RvY_06059.1"; Scaffold002 rebuild exon 7837949 7838050 . + . gene_id "RvY_06059"; transcript_id "RvY_06059.1"; Scaffold002 rebuild exon 7838406 7839049 . + . gene_id "RvY_06059"; transcript_id "RvY_06059.1"; Scaffold002 rebuild transcript 7840530 7844054 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; annotation "putative Dymeclin"; Pfam "[Hid1] High-temperature-induced dauer-formation protein|[Dymeclin] Dyggve-Melchior-Clausen syndrome protein"; similar_genes "DYM_CHICK(e-value:1.9e-35;bit-score:147.0)"; Scaffold002 rebuild exon 7840530 7840889 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7841063 7841245 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7841312 7841617 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7841931 7842226 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7842428 7842592 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7842661 7842779 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7842852 7842977 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7843050 7843445 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7843694 7843837 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild exon 7843915 7844054 . - . gene_id "RvY_06060"; transcript_id "RvY_06060.1"; Scaffold002 rebuild transcript 7845341 7847182 . + . gene_id "RvY_06061"; transcript_id "RvY_06061.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7845341 7845398 . + . gene_id "RvY_06061"; transcript_id "RvY_06061.1"; Scaffold002 rebuild exon 7845457 7845660 . + . gene_id "RvY_06061"; transcript_id "RvY_06061.1"; Scaffold002 rebuild exon 7845787 7845972 . + . gene_id "RvY_06061"; transcript_id "RvY_06061.1"; Scaffold002 rebuild exon 7846269 7847182 . + . gene_id "RvY_06061"; transcript_id "RvY_06061.1"; Scaffold002 rebuild transcript 7847727 7850254 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; annotation "putative Mothers against decapentaplegic homolog 5"; Pfam "[MH2]|[MH1]"; similar_genes "SMAD5_DANRE(e-value:2.8e-36;bit-score:150.0)"; Scaffold002 rebuild exon 7847727 7847943 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild exon 7848165 7848216 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild exon 7848283 7848655 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild exon 7848874 7849025 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild exon 7849091 7849459 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild exon 7849526 7849719 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild exon 7850028 7850254 . - . gene_id "RvY_06062"; transcript_id "RvY_06062.1"; Scaffold002 rebuild transcript 7851351 7853960 . - . gene_id "RvY_06063"; transcript_id "RvY_06063.1"; gene_name "SrmB"; annotation "putative ATP-dependent RNA helicase DDX55"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[DUF4217]|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K14809"; similar_genes "DDX55_CHICK(e-value:2.5e-39;bit-score:160.0)"; Scaffold002 rebuild exon 7851351 7851446 . - . gene_id "RvY_06063"; transcript_id "RvY_06063.1"; Scaffold002 rebuild exon 7851515 7852075 . - . gene_id "RvY_06063"; transcript_id "RvY_06063.1"; Scaffold002 rebuild exon 7852330 7852835 . - . gene_id "RvY_06063"; transcript_id "RvY_06063.1"; Scaffold002 rebuild exon 7853122 7853662 . - . gene_id "RvY_06063"; transcript_id "RvY_06063.1"; Scaffold002 rebuild exon 7853850 7853960 . - . gene_id "RvY_06063"; transcript_id "RvY_06063.1"; Scaffold002 rebuild transcript 7856305 7858418 . + . gene_id "RvY_06064"; transcript_id "RvY_06064.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold002 rebuild exon 7856305 7856457 . + . gene_id "RvY_06064"; transcript_id "RvY_06064.1"; Scaffold002 rebuild exon 7856498 7856965 . + . gene_id "RvY_06064"; transcript_id "RvY_06064.1"; Scaffold002 rebuild exon 7856974 7857836 . + . gene_id "RvY_06064"; transcript_id "RvY_06064.1"; Scaffold002 rebuild exon 7857911 7858418 . + . gene_id "RvY_06064"; transcript_id "RvY_06064.1"; Scaffold002 rebuild transcript 7862069 7869962 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; gene_name "DM13"; annotation "hypothetical protein."; Pfam "[DOMON]|[DM13] Electron transfer DM13"; CDD "Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9."; similar_genes "DOMON_DROME(e-value:6.0e-11;bit-score:65.0)"; Scaffold002 rebuild exon 7862069 7862177 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7863730 7864052 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7864344 7864512 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7865264 7865457 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7865970 7866150 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7866610 7866679 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7867407 7867611 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7867698 7867806 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7867878 7868020 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7868224 7868735 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7868975 7869085 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7869160 7869287 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7869347 7869554 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild exon 7869725 7869962 . + . gene_id "RvY_06065"; transcript_id "RvY_06065.1"; Scaffold002 rebuild transcript 7870148 7871485 . - . gene_id "RvY_06066"; transcript_id "RvY_06066.1"; gene_name "ASAH1"; annotation "putative Acid ceramidase"; Pfam "[CBAH] Linear amide C-N hydrolases, choloylglycine hydrolase family"; CDD "AC_NAAA This conserved domain includes two closely related proteins, acid ceramidase (AC, also known as N-acylsphingosine amidohydrolase), and N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC catalyzes the hydrolysis of ceramide to sphingosine and fatty acid. Ceramide is required for the biosynthesis of most sphingolipids and plays an important role in many signal transduction pathways by inducing apoptosis and/or arresting cell growth. An inherited deficiency of AC activity leads to the lysosomal storage disorder known as Farber disease. AC is considered a ""rheostat"" important for maintaining the proper intracellular levels of these lipids since hydrolysis of ceramide is the only source of sphingosine in cells. NAAA is a eukaryotic glycoprotein that hydrolyzes bioactive N-acylethanolamines, including anandamide (an endocannabinoid) and N-palmitoylethanolamine (an anti-inflammatory and neuroprotective substance), to fatty acids and ethanolamine at acidic pH. NAAA shows structural and functional similarity to acid ceramidase, but lacks the ceramide-hydrolyzing activity of AC."; EC "EC3.5.1.23"; KO "K12348"; similar_genes "ASAH1_MACFA(e-value:6.4e-36;bit-score:148.0)"; Scaffold002 rebuild exon 7870148 7870319 . - . gene_id "RvY_06066"; transcript_id "RvY_06066.1"; Scaffold002 rebuild exon 7870406 7870571 . - . gene_id "RvY_06066"; transcript_id "RvY_06066.1"; Scaffold002 rebuild exon 7870648 7871485 . - . gene_id "RvY_06066"; transcript_id "RvY_06066.1"; Scaffold002 rebuild transcript 7873050 7875585 . + . gene_id "RvY_06067"; transcript_id "RvY_06067.1"; gene_name "DUF659"; annotation "hypothetical protein."; Pfam "[DUF659] Protein of unknown function (DUF 659)"; CDD "Protein of unknown function (DUF 659). Transposase-like protein with no known function."; Scaffold002 rebuild exon 7873050 7873104 . + . gene_id "RvY_06067"; transcript_id "RvY_06067.1"; Scaffold002 rebuild exon 7873182 7873784 . + . gene_id "RvY_06067"; transcript_id "RvY_06067.1"; Scaffold002 rebuild exon 7873850 7874343 . + . gene_id "RvY_06067"; transcript_id "RvY_06067.1"; Scaffold002 rebuild exon 7874494 7875331 . + . gene_id "RvY_06067"; transcript_id "RvY_06067.1"; Scaffold002 rebuild exon 7875422 7875585 . + . gene_id "RvY_06067"; transcript_id "RvY_06067.1"; Scaffold002 rebuild transcript 7876224 7877621 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.1"; gene_name "LAP1C"; annotation "hypothetical protein."; Pfam "[LAP1C] Lamina-associated polypeptide 1C (LAP1C)"; CDD "Lamina-associated polypeptide 1C (LAP1C). This family contains rat LAP1C proteins and several uncharacterized highly related sequences from both mice and humans. LAP1s (lamina-associated polypeptide 1s) are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina."; Scaffold002 rebuild exon 7876224 7876399 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.1"; Scaffold002 rebuild exon 7876493 7877621 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.1"; Scaffold002 rebuild transcript 7876224 7877621 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.2"; gene_name "LAP1C"; annotation "hypothetical protein."; Pfam "[LAP1C] Lamina-associated polypeptide 1C (LAP1C)"; CDD "Lamina-associated polypeptide 1C (LAP1C). This family contains rat LAP1C proteins and several uncharacterized highly related sequences from both mice and humans. LAP1s (lamina-associated polypeptide 1s) are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina."; Scaffold002 rebuild exon 7876224 7876399 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.2"; Scaffold002 rebuild exon 7876496 7877621 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.2"; Scaffold002 rebuild transcript 7876224 7877807 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.3"; gene_name "LAP1C"; annotation "hypothetical protein."; Pfam "[LAP1C] Lamina-associated polypeptide 1C (LAP1C)"; CDD "Lamina-associated polypeptide 1C (LAP1C). This family contains rat LAP1C proteins and several uncharacterized highly related sequences from both mice and humans. LAP1s (lamina-associated polypeptide 1s) are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina."; Scaffold002 rebuild exon 7876224 7877493 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.3"; Scaffold002 rebuild exon 7877785 7877807 . + . gene_id "RvY_06068"; transcript_id "RvY_06068.3"; Scaffold002 rebuild transcript 7878000 7881170 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_1_like] MFS_1 like family"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 7878000 7878205 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild exon 7878292 7878450 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild exon 7878515 7878742 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild exon 7878821 7878939 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild exon 7879238 7879791 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild exon 7880005 7880636 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild exon 7880873 7881170 . - . gene_id "RvY_06069"; transcript_id "RvY_06069.1"; Scaffold002 rebuild transcript 7881789 7885289 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_1_like] MFS_1 like family"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold002 rebuild exon 7881789 7882015 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; Scaffold002 rebuild exon 7882380 7882547 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; Scaffold002 rebuild exon 7882670 7883025 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; Scaffold002 rebuild exon 7883299 7884430 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; Scaffold002 rebuild exon 7884752 7884895 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; Scaffold002 rebuild exon 7884992 7885289 . - . gene_id "RvY_06070"; transcript_id "RvY_06070.1"; Scaffold002 rebuild transcript 7885344 7887321 . - . gene_id "RvY_06071"; transcript_id "RvY_06071.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7885344 7885668 . - . gene_id "RvY_06071"; transcript_id "RvY_06071.1"; Scaffold002 rebuild exon 7887320 7887321 . - . gene_id "RvY_06071"; transcript_id "RvY_06071.1"; Scaffold002 rebuild transcript 7888368 7890101 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.1"; annotation "hypothetical protein."; Pfam "[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"; Scaffold002 rebuild exon 7888368 7888590 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.1"; Scaffold002 rebuild exon 7888815 7888971 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.1"; Scaffold002 rebuild exon 7889026 7889171 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.1"; Scaffold002 rebuild exon 7889445 7889564 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.1"; Scaffold002 rebuild exon 7889710 7890101 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.1"; Scaffold002 rebuild transcript 7889029 7890101 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.2"; annotation "hypothetical protein."; Pfam "[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"; Scaffold002 rebuild exon 7889029 7889171 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.2"; Scaffold002 rebuild exon 7889445 7889564 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.2"; Scaffold002 rebuild exon 7889696 7890101 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.2"; Scaffold002 rebuild transcript 7889434 7890101 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.3"; annotation "hypothetical protein."; Pfam "[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"; Scaffold002 rebuild exon 7889434 7889564 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.3"; Scaffold002 rebuild exon 7889696 7890101 . - . gene_id "RvY_06072"; transcript_id "RvY_06072.3"; Scaffold002 rebuild transcript 7891440 7893067 . + . gene_id "RvY_06073"; transcript_id "RvY_06073.1"; gene_name "B3GALT2"; annotation "beta-1,3-galactosyltransferase 2 [EC:2.4.1.-]"; Pfam "[Galactosyl_T] Galactosyltransferase"; EC "EC2.4.1.-"; KO "K07820"; Scaffold002 rebuild exon 7891440 7892181 . + . gene_id "RvY_06073"; transcript_id "RvY_06073.1"; Scaffold002 rebuild exon 7892706 7893067 . + . gene_id "RvY_06073"; transcript_id "RvY_06073.1"; Scaffold002 rebuild transcript 7893311 7895010 . - . gene_id "RvY_06074"; transcript_id "RvY_06074.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7893311 7893518 . - . gene_id "RvY_06074"; transcript_id "RvY_06074.1"; Scaffold002 rebuild exon 7893923 7894487 . - . gene_id "RvY_06074"; transcript_id "RvY_06074.1"; Scaffold002 rebuild exon 7894851 7895010 . - . gene_id "RvY_06074"; transcript_id "RvY_06074.1"; Scaffold002 rebuild transcript 7896984 7898336 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7896984 7897067 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.1"; Scaffold002 rebuild exon 7897140 7897528 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.1"; Scaffold002 rebuild exon 7898123 7898336 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.1"; Scaffold002 rebuild transcript 7896931 7897500 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7896931 7897067 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.2"; Scaffold002 rebuild exon 7897140 7897500 . - . gene_id "RvY_06075"; transcript_id "RvY_06075.2"; Scaffold002 rebuild transcript 7899146 7900831 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7899146 7899577 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild exon 7899679 7899846 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild exon 7899943 7900003 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild exon 7900115 7900246 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild exon 7900330 7900542 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild exon 7900627 7900724 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild exon 7900808 7900831 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.1"; Scaffold002 rebuild transcript 7899146 7900739 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7899146 7899577 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; Scaffold002 rebuild exon 7899679 7899846 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; Scaffold002 rebuild exon 7899943 7900003 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; Scaffold002 rebuild exon 7900115 7900246 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; Scaffold002 rebuild exon 7900330 7900542 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; Scaffold002 rebuild exon 7900627 7900739 . + . gene_id "RvY_06076"; transcript_id "RvY_06076.2"; Scaffold002 rebuild transcript 7903702 7903893 . + . gene_id "RvY_06077"; transcript_id "RvY_06077.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7903702 7903893 . + . gene_id "RvY_06077"; transcript_id "RvY_06077.1"; Scaffold002 rebuild transcript 7904733 7905875 . - . gene_id "RvY_06078"; transcript_id "RvY_06078.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7904733 7904789 . - . gene_id "RvY_06078"; transcript_id "RvY_06078.1"; Scaffold002 rebuild exon 7904872 7905075 . - . gene_id "RvY_06078"; transcript_id "RvY_06078.1"; Scaffold002 rebuild exon 7905396 7905875 . - . gene_id "RvY_06078"; transcript_id "RvY_06078.1"; Scaffold002 rebuild transcript 7906105 7910996 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; annotation "hypothetical protein."; Pfam "[DUF1620]|[PQQ_2] PQQ-like domain"; similar_genes "K0090_XENLA(e-value:4.7e-15;bit-score:79.0)"; Scaffold002 rebuild exon 7906105 7906265 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7906403 7906636 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7906886 7907096 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7907164 7907276 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7907510 7907705 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7907780 7908064 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7908346 7908501 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7908558 7908859 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7909185 7909584 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7909648 7909774 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7909871 7910035 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7910108 7910183 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7910263 7910418 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7910567 7910632 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7910691 7910824 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild exon 7910884 7910996 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.1"; Scaffold002 rebuild transcript 7906105 7910996 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; annotation "hypothetical protein."; Pfam "[DUF1620]|[PQQ_2] PQQ-like domain"; similar_genes "K0090_XENLA(e-value:4.7e-15;bit-score:79.0)"; Scaffold002 rebuild exon 7906105 7906265 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7906403 7906636 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7906886 7907096 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7907164 7907276 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7907510 7907705 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7907780 7908061 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7908346 7908501 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7908558 7908859 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7909185 7909584 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7909648 7909774 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7909871 7910035 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7910108 7910183 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7910263 7910418 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7910567 7910632 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7910691 7910824 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild exon 7910884 7910996 . - . gene_id "RvY_06079"; transcript_id "RvY_06079.2"; Scaffold002 rebuild transcript 7911888 7912166 . + . gene_id "RvY_06080"; transcript_id "RvY_06080.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7911888 7912166 . + . gene_id "RvY_06080"; transcript_id "RvY_06080.1"; Scaffold002 rebuild transcript 7912271 7913878 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.1"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold002 rebuild exon 7912271 7912559 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.1"; Scaffold002 rebuild exon 7912725 7912976 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.1"; Scaffold002 rebuild exon 7913182 7913344 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.1"; Scaffold002 rebuild exon 7913407 7913672 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.1"; Scaffold002 rebuild exon 7913757 7913878 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.1"; Scaffold002 rebuild transcript 7912995 7913878 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.2"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold002 rebuild exon 7912995 7913016 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.2"; Scaffold002 rebuild exon 7913182 7913344 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.2"; Scaffold002 rebuild exon 7913407 7913672 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.2"; Scaffold002 rebuild exon 7913757 7913878 . + . gene_id "RvY_06081"; transcript_id "RvY_06081.2"; Scaffold002 rebuild transcript 7912721 7912990 . - . gene_id "RvY_06082"; transcript_id "RvY_06082.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7912721 7912990 . - . gene_id "RvY_06082"; transcript_id "RvY_06082.1"; Scaffold002 rebuild transcript 7914608 7915201 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7914608 7915201 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.1"; Scaffold002 rebuild transcript 7915249 7915974 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7915249 7915309 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.2"; Scaffold002 rebuild exon 7915385 7915488 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.2"; Scaffold002 rebuild exon 7915563 7915599 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.2"; Scaffold002 rebuild exon 7915757 7915850 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.2"; Scaffold002 rebuild exon 7915911 7915974 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.2"; Scaffold002 rebuild transcript 7913884 7915974 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7913884 7913896 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.3"; Scaffold002 rebuild exon 7915385 7915488 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.3"; Scaffold002 rebuild exon 7915563 7915599 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.3"; Scaffold002 rebuild exon 7915757 7915850 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.3"; Scaffold002 rebuild exon 7915911 7915974 . + . gene_id "RvY_06083"; transcript_id "RvY_06083.3"; Scaffold002 rebuild transcript 7914391 7915140 . - . gene_id "RvY_06084"; transcript_id "RvY_06084.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7914391 7915140 . - . gene_id "RvY_06084"; transcript_id "RvY_06084.1"; Scaffold002 rebuild transcript 7916759 7917256 . + . gene_id "RvY_06085"; transcript_id "RvY_06085.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7916759 7917256 . + . gene_id "RvY_06085"; transcript_id "RvY_06085.1"; Scaffold002 rebuild transcript 7918300 7922396 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; gene_name "KCNCN"; annotation "Potassium voltage-gated channel protein Shaw"; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; KO "K05320"; similar_genes "KCNAW_DROME(e-value:1.9e-109;bit-score:393.0)"; Scaffold002 rebuild exon 7918300 7918359 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7918645 7918911 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7919349 7919528 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7920585 7920766 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7920836 7921071 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7921136 7921290 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7921359 7921386 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7921595 7921975 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild exon 7922236 7922396 . + . gene_id "RvY_06086"; transcript_id "RvY_06086.1"; Scaffold002 rebuild transcript 7922693 7923373 . + . gene_id "RvY_06087"; transcript_id "RvY_06087.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7922693 7923150 . + . gene_id "RvY_06087"; transcript_id "RvY_06087.1"; Scaffold002 rebuild exon 7923265 7923373 . + . gene_id "RvY_06087"; transcript_id "RvY_06087.1"; Scaffold002 rebuild transcript 7922753 7923136 . - . gene_id "RvY_06088"; transcript_id "RvY_06088.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7922753 7923136 . - . gene_id "RvY_06088"; transcript_id "RvY_06088.1"; Scaffold002 rebuild transcript 7923756 7924175 . - . gene_id "RvY_06089"; transcript_id "RvY_06089.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7923756 7924175 . - . gene_id "RvY_06089"; transcript_id "RvY_06089.1"; Scaffold002 rebuild transcript 7926018 7927413 . + . gene_id "RvY_06090"; transcript_id "RvY_06090.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1)GTR5_HORSE(e-value:4.1e-14;bit-score:76.0)(2)GTR9_PONAB(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 7926018 7926447 . + . gene_id "RvY_06090"; transcript_id "RvY_06090.1"; Scaffold002 rebuild exon 7926518 7927413 . + . gene_id "RvY_06090"; transcript_id "RvY_06090.1"; Scaffold002 rebuild transcript 7925685 7926524 . + . gene_id "RvY_06090"; transcript_id "RvY_06090.2"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "(1)GTR5_HORSE(e-value:4.1e-14;bit-score:76.0)(2)GTR9_PONAB(e-value:5.1e-06;bit-score:49.0)"; Scaffold002 rebuild exon 7925685 7926524 . + . gene_id "RvY_06090"; transcript_id "RvY_06090.2"; Scaffold002 rebuild transcript 7927541 7930617 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold002 rebuild exon 7927541 7927813 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7927885 7928155 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7928886 7929026 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7929102 7929153 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7929276 7929463 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7929542 7929741 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7929818 7929987 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7930098 7930158 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild exon 7930231 7930617 . - . gene_id "RvY_06091"; transcript_id "RvY_06091.1"; Scaffold002 rebuild transcript 7931933 7933067 . - . gene_id "RvY_06092"; transcript_id "RvY_06092.1"; gene_name "folE"; annotation "GTP cyclohydrolase 1"; Pfam "[GTP_cyclohydroI] GTP cyclohydrolase I"; CDD "GTP cyclohydrolase I; Provisional"; EC "EC3.5.4.16"; KO "K01495"; similar_genes "GCH1_RAT(e-value:9.7e-73;bit-score:271.0)"; Scaffold002 rebuild exon 7931933 7932059 . - . gene_id "RvY_06092"; transcript_id "RvY_06092.1"; Scaffold002 rebuild exon 7932160 7932202 . - . gene_id "RvY_06092"; transcript_id "RvY_06092.1"; Scaffold002 rebuild exon 7932296 7932337 . - . gene_id "RvY_06092"; transcript_id "RvY_06092.1"; Scaffold002 rebuild exon 7932454 7932651 . - . gene_id "RvY_06092"; transcript_id "RvY_06092.1"; Scaffold002 rebuild exon 7932722 7933067 . - . gene_id "RvY_06092"; transcript_id "RvY_06092.1"; Scaffold002 rebuild transcript 7936070 7936489 . - . gene_id "RvY_06093"; transcript_id "RvY_06093.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7936070 7936489 . - . gene_id "RvY_06093"; transcript_id "RvY_06093.1"; Scaffold002 rebuild transcript 7940369 7940800 . + . gene_id "RvY_06094"; transcript_id "RvY_06094.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7940369 7940609 . + . gene_id "RvY_06094"; transcript_id "RvY_06094.1"; Scaffold002 rebuild exon 7940706 7940800 . + . gene_id "RvY_06094"; transcript_id "RvY_06094.1"; Scaffold002 rebuild transcript 7942162 7945071 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; gene_name "P2RX4"; annotation "purinergic receptor P2X, ligand-gated ion channel 4"; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; KO "K05218"; similar_genes "P2RX2_RAT(e-value:2.9e-06;bit-score:50.0)"; Scaffold002 rebuild exon 7942162 7942247 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7942328 7942420 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7943037 7943187 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7943274 7943345 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7943535 7943698 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7943788 7944010 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7944214 7944284 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7944367 7944697 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild exon 7944793 7945071 . + . gene_id "RvY_06095"; transcript_id "RvY_06095.1"; Scaffold002 rebuild transcript 7945396 7946807 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.1"; gene_name "PTZ00169"; annotation "(1)putative Solute carrier family 25 member 42(2)hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; CDD "ADP/ATP transporter on adenylate translocase; Provisional"; KO "(1)K15085"; similar_genes "(1)S2542_HUMAN(e-value:1.0e-29;bit-score:128.0)(2)S2542_DANRE(e-value:3.7e-17;bit-score:86.0)"; Scaffold002 rebuild exon 7945396 7945760 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.1"; Scaffold002 rebuild exon 7946017 7946240 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.1"; Scaffold002 rebuild exon 7946301 7946484 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.1"; Scaffold002 rebuild exon 7946550 7946664 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.1"; Scaffold002 rebuild exon 7946724 7946807 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.1"; Scaffold002 rebuild transcript 7945985 7946807 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.2"; gene_name "PTZ00169"; annotation "(1)putative Solute carrier family 25 member 42(2)hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; CDD "ADP/ATP transporter on adenylate translocase; Provisional"; KO "(1)K15085"; similar_genes "(1)S2542_HUMAN(e-value:1.0e-29;bit-score:128.0)(2)S2542_DANRE(e-value:3.7e-17;bit-score:86.0)"; Scaffold002 rebuild exon 7945985 7946240 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.2"; Scaffold002 rebuild exon 7946301 7946484 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.2"; Scaffold002 rebuild exon 7946550 7946664 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.2"; Scaffold002 rebuild exon 7946724 7946807 . - . gene_id "RvY_06096"; transcript_id "RvY_06096.2"; Scaffold002 rebuild transcript 7947272 7948314 . + . gene_id "RvY_06097"; transcript_id "RvY_06097.1"; gene_name "SRP19"; annotation "signal recognition particle subunit SRP19"; Pfam "[SRP19] SRP19 protein"; KO "K03105"; Scaffold002 rebuild exon 7947272 7947309 . + . gene_id "RvY_06097"; transcript_id "RvY_06097.1"; Scaffold002 rebuild exon 7947371 7947455 . + . gene_id "RvY_06097"; transcript_id "RvY_06097.1"; Scaffold002 rebuild exon 7947595 7947666 . + . gene_id "RvY_06097"; transcript_id "RvY_06097.1"; Scaffold002 rebuild exon 7947976 7948075 . + . gene_id "RvY_06097"; transcript_id "RvY_06097.1"; Scaffold002 rebuild exon 7948163 7948314 . + . gene_id "RvY_06097"; transcript_id "RvY_06097.1"; Scaffold002 rebuild transcript 7948772 7949605 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.1"; gene_name "PTZ00184"; annotation "hypothetical protein."; Pfam "[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "calmodulin; Provisional"; Scaffold002 rebuild exon 7948772 7948881 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.1"; Scaffold002 rebuild exon 7948945 7949168 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.1"; Scaffold002 rebuild exon 7949267 7949443 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.1"; Scaffold002 rebuild exon 7949508 7949605 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.1"; Scaffold002 rebuild transcript 7948879 7949605 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.2"; gene_name "PTZ00184"; annotation "hypothetical protein."; Pfam "[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "calmodulin; Provisional"; Scaffold002 rebuild exon 7948879 7948881 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.2"; Scaffold002 rebuild exon 7948945 7948975 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.2"; Scaffold002 rebuild exon 7949037 7949168 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.2"; Scaffold002 rebuild exon 7949267 7949443 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.2"; Scaffold002 rebuild exon 7949508 7949605 . + . gene_id "RvY_06098"; transcript_id "RvY_06098.2"; Scaffold002 rebuild transcript 7949794 7952540 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; gene_name "SLC18A"; annotation "Synaptic vesicular amine transporter"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; KO "K08155"; similar_genes "VMAT2_HUMAN(e-value:2.2e-74;bit-score:276.0)"; Scaffold002 rebuild exon 7949794 7949976 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild exon 7950231 7950370 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild exon 7950497 7950680 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild exon 7950848 7951176 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild exon 7951288 7951554 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild exon 7951701 7952147 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild exon 7952426 7952540 . - . gene_id "RvY_06099"; transcript_id "RvY_06099.1"; Scaffold002 rebuild transcript 7956427 7956988 . - . gene_id "RvY_06100"; transcript_id "RvY_06100.1"; gene_name "NDUFA2"; annotation "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [EC:1.6.5.3 1.6.99.3]"; Pfam "[L51_S25_CI-B8] Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03946"; similar_genes "NDUA2_MOUSE(e-value:1.7e-19;bit-score:94.0)"; Scaffold002 rebuild exon 7956427 7956524 . - . gene_id "RvY_06100"; transcript_id "RvY_06100.1"; Scaffold002 rebuild exon 7956725 7956831 . - . gene_id "RvY_06100"; transcript_id "RvY_06100.1"; Scaffold002 rebuild exon 7956903 7956988 . - . gene_id "RvY_06100"; transcript_id "RvY_06100.1"; Scaffold002 rebuild transcript 7958275 7960706 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Amidase_2] N-acetylmuramoyl-L-alanine amidase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "KITA_DANRE(e-value:6.0e-11;bit-score:65.0)"; Scaffold002 rebuild exon 7958275 7958501 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7958583 7958710 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7958776 7959104 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7959180 7959276 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7959448 7959702 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7959764 7960158 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7960233 7960459 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild exon 7960523 7960706 . + . gene_id "RvY_06101"; transcript_id "RvY_06101.1"; Scaffold002 rebuild transcript 7960965 7962266 . - . gene_id "RvY_06102"; transcript_id "RvY_06102.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7960965 7961072 . - . gene_id "RvY_06102"; transcript_id "RvY_06102.1"; Scaffold002 rebuild exon 7961181 7961563 . - . gene_id "RvY_06102"; transcript_id "RvY_06102.1"; Scaffold002 rebuild exon 7961625 7961771 . - . gene_id "RvY_06102"; transcript_id "RvY_06102.1"; Scaffold002 rebuild exon 7961849 7961999 . - . gene_id "RvY_06102"; transcript_id "RvY_06102.1"; Scaffold002 rebuild exon 7962108 7962266 . - . gene_id "RvY_06102"; transcript_id "RvY_06102.1"; Scaffold002 rebuild transcript 7962715 7963991 . - . gene_id "RvY_06103"; transcript_id "RvY_06103.1"; annotation "hypothetical protein."; Pfam "[DUF862] PPPDE putative peptidase domain"; similar_genes "PPDE2_XENLA(e-value:1.4e-18;bit-score:91.0)"; Scaffold002 rebuild exon 7962715 7962892 . - . gene_id "RvY_06103"; transcript_id "RvY_06103.1"; Scaffold002 rebuild exon 7962960 7963082 . - . gene_id "RvY_06103"; transcript_id "RvY_06103.1"; Scaffold002 rebuild exon 7963147 7963256 . - . gene_id "RvY_06103"; transcript_id "RvY_06103.1"; Scaffold002 rebuild exon 7963463 7963554 . - . gene_id "RvY_06103"; transcript_id "RvY_06103.1"; Scaffold002 rebuild exon 7963616 7963991 . - . gene_id "RvY_06103"; transcript_id "RvY_06103.1"; Scaffold002 rebuild transcript 7964163 7964762 . + . gene_id "RvY_06104"; transcript_id "RvY_06104.1"; gene_name "H3"; annotation "hypothetical protein."; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; Scaffold002 rebuild exon 7964163 7964195 . + . gene_id "RvY_06104"; transcript_id "RvY_06104.1"; Scaffold002 rebuild exon 7964337 7964477 . + . gene_id "RvY_06104"; transcript_id "RvY_06104.1"; Scaffold002 rebuild exon 7964556 7964651 . + . gene_id "RvY_06104"; transcript_id "RvY_06104.1"; Scaffold002 rebuild exon 7964733 7964762 . + . gene_id "RvY_06104"; transcript_id "RvY_06104.1"; Scaffold002 rebuild transcript 7965444 7967019 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; gene_name "(1)PIGQ(2,3)Gpi1"; annotation "(1)phosphatidylinositol glycan, class Q(2,3)hypothetical protein."; Pfam "[Gpi1] N-acetylglucosaminyl transferase component (Gpi1)"; CDD "N-acetylglucosaminyl transferase component (Gpi1). Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins.The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively."; EC "(1,2)EC2.4.1.198"; KO "(1)K03860"; similar_genes "(1,2)PIGQ_HUMAN(e-value:3.3e-22;bit-score:103.0)"; Scaffold002 rebuild exon 7965444 7965565 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; Scaffold002 rebuild exon 7965640 7965715 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; Scaffold002 rebuild exon 7965809 7966001 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; Scaffold002 rebuild exon 7966065 7966218 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; Scaffold002 rebuild exon 7966476 7966602 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; Scaffold002 rebuild exon 7966675 7967019 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.1"; Scaffold002 rebuild transcript 7965444 7966376 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.2"; gene_name "(1)PIGQ(2,3)Gpi1"; annotation "(1)phosphatidylinositol glycan, class Q(2,3)hypothetical protein."; Pfam "[Gpi1] N-acetylglucosaminyl transferase component (Gpi1)"; CDD "N-acetylglucosaminyl transferase component (Gpi1). Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins.The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively."; EC "(1,2)EC2.4.1.198"; KO "(1)K03860"; similar_genes "(1,2)PIGQ_HUMAN(e-value:3.3e-22;bit-score:103.0)"; Scaffold002 rebuild exon 7965444 7965565 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.2"; Scaffold002 rebuild exon 7965640 7965715 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.2"; Scaffold002 rebuild exon 7965809 7966001 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.2"; Scaffold002 rebuild exon 7966065 7966218 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.2"; Scaffold002 rebuild exon 7966310 7966376 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.2"; Scaffold002 rebuild transcript 7966351 7967019 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.3"; gene_name "(1)PIGQ(2,3)Gpi1"; annotation "(1)phosphatidylinositol glycan, class Q(2,3)hypothetical protein."; Pfam "[Gpi1] N-acetylglucosaminyl transferase component (Gpi1)"; CDD "N-acetylglucosaminyl transferase component (Gpi1). Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins.The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively."; EC "(1,2)EC2.4.1.198"; KO "(1)K03860"; similar_genes "(1,2)PIGQ_HUMAN(e-value:3.3e-22;bit-score:103.0)"; Scaffold002 rebuild exon 7966351 7966602 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.3"; Scaffold002 rebuild exon 7966675 7967019 . - . gene_id "RvY_06105"; transcript_id "RvY_06105.3"; Scaffold002 rebuild transcript 7969055 7969791 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7969055 7969135 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.1"; Scaffold002 rebuild exon 7969239 7969398 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.1"; Scaffold002 rebuild exon 7969490 7969791 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.1"; Scaffold002 rebuild transcript 7969288 7969702 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7969288 7969398 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.2"; Scaffold002 rebuild exon 7969490 7969702 . + . gene_id "RvY_06106"; transcript_id "RvY_06106.2"; Scaffold002 rebuild transcript 7970583 7970789 . - . gene_id "RvY_06107"; transcript_id "RvY_06107.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7970583 7970789 . - . gene_id "RvY_06107"; transcript_id "RvY_06107.1"; Scaffold002 rebuild transcript 7971124 7971426 . + . gene_id "RvY_06108"; transcript_id "RvY_06108.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7971124 7971426 . + . gene_id "RvY_06108"; transcript_id "RvY_06108.1"; Scaffold002 rebuild transcript 7973218 7973769 . - . gene_id "RvY_06109"; transcript_id "RvY_06109.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7973218 7973769 . - . gene_id "RvY_06109"; transcript_id "RvY_06109.1"; Scaffold002 rebuild transcript 7974222 7974943 . - . gene_id "RvY_06110"; transcript_id "RvY_06110.1"; annotation "hypothetical protein."; Pfam "[rve] Integrase core domain"; Scaffold002 rebuild exon 7974222 7974639 . - . gene_id "RvY_06110"; transcript_id "RvY_06110.1"; Scaffold002 rebuild exon 7974657 7974943 . - . gene_id "RvY_06110"; transcript_id "RvY_06110.1"; Scaffold002 rebuild transcript 7976647 7976835 . - . gene_id "RvY_06111"; transcript_id "RvY_06111.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7976647 7976835 . - . gene_id "RvY_06111"; transcript_id "RvY_06111.1"; Scaffold002 rebuild transcript 7985856 7987471 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.2"; annotation "hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "(1,2)ANO8_HUMAN(e-value:4.2e-18;bit-score:89.0)(3)ANO10_DANRE(e-value:5.5e-16;bit-score:82.0)"; Scaffold002 rebuild exon 7985856 7986152 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.2"; Scaffold002 rebuild exon 7986241 7986276 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.2"; Scaffold002 rebuild exon 7986347 7986710 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.2"; Scaffold002 rebuild exon 7986786 7987062 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.2"; Scaffold002 rebuild exon 7987129 7987471 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.2"; Scaffold002 rebuild transcript 7986266 7987471 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.3"; annotation "hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "(1,2)ANO8_HUMAN(e-value:4.2e-18;bit-score:89.0)(3)ANO10_DANRE(e-value:5.5e-16;bit-score:82.0)"; Scaffold002 rebuild exon 7986266 7986710 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.3"; Scaffold002 rebuild exon 7986786 7987062 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.3"; Scaffold002 rebuild exon 7987129 7987471 . - . gene_id "RvY_06113"; transcript_id "RvY_06113.3"; Scaffold002 rebuild transcript 7987887 7988311 . - . gene_id "RvY_06114"; transcript_id "RvY_06114.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7987887 7988045 . - . gene_id "RvY_06114"; transcript_id "RvY_06114.1"; Scaffold002 rebuild exon 7988123 7988311 . - . gene_id "RvY_06114"; transcript_id "RvY_06114.1"; Scaffold002 rebuild transcript 7989614 7993394 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.1"; gene_name "CHD"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide."; Scaffold002 rebuild exon 7989614 7990281 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.1"; Scaffold002 rebuild exon 7990400 7991314 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.1"; Scaffold002 rebuild exon 7991385 7991894 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.1"; Scaffold002 rebuild exon 7992358 7992748 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.1"; Scaffold002 rebuild exon 7993029 7993394 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.1"; Scaffold002 rebuild transcript 7989614 7992742 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.2"; gene_name "CHD"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide."; Scaffold002 rebuild exon 7989614 7990278 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.2"; Scaffold002 rebuild exon 7990400 7991314 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.2"; Scaffold002 rebuild exon 7991385 7991894 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.2"; Scaffold002 rebuild exon 7992358 7992742 . - . gene_id "RvY_06115"; transcript_id "RvY_06115.2"; Scaffold002 rebuild transcript 7994112 7996659 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7994112 7994225 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.1"; Scaffold002 rebuild exon 7994426 7995139 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.1"; Scaffold002 rebuild exon 7995466 7996162 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.1"; Scaffold002 rebuild exon 7996247 7996405 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.1"; Scaffold002 rebuild exon 7996472 7996659 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.1"; Scaffold002 rebuild transcript 7994024 7996659 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7994024 7994050 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; Scaffold002 rebuild exon 7994160 7994225 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; Scaffold002 rebuild exon 7994426 7995139 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; Scaffold002 rebuild exon 7995466 7996162 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; Scaffold002 rebuild exon 7996247 7996405 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; Scaffold002 rebuild exon 7996472 7996659 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.2"; Scaffold002 rebuild transcript 7994357 7996659 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 7994357 7995139 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.3"; Scaffold002 rebuild exon 7995466 7996162 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.3"; Scaffold002 rebuild exon 7996247 7996405 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.3"; Scaffold002 rebuild exon 7996472 7996659 . - . gene_id "RvY_06116"; transcript_id "RvY_06116.3"; Scaffold002 rebuild transcript 7997413 7997847 . - . gene_id "RvY_06117"; transcript_id "RvY_06117.1"; annotation "putative Mediator of RNA polymerase II transcription subunit 31"; Pfam "[Med31] SOH1"; KO "K15153"; similar_genes "MED31_AEDAE(e-value:3.3e-39;bit-score:159.0)"; Scaffold002 rebuild exon 7997413 7997847 . - . gene_id "RvY_06117"; transcript_id "RvY_06117.1"; Scaffold002 rebuild transcript 7998313 8000334 . + . gene_id "RvY_06118"; transcript_id "RvY_06118.1"; annotation "putative Negative elongation factor D"; Pfam "[TH1] TH1 protein"; KO "K15181"; similar_genes "NELFD_DROME(e-value:5.3e-46;bit-score:182.0)"; Scaffold002 rebuild exon 7998313 7999110 . + . gene_id "RvY_06118"; transcript_id "RvY_06118.1"; Scaffold002 rebuild exon 7999357 8000334 . + . gene_id "RvY_06118"; transcript_id "RvY_06118.1"; Scaffold002 rebuild transcript 8000696 8003068 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; gene_name "ORC2"; annotation "origin recognition complex subunit 2"; Pfam "[ORC2] Origin recognition complex subunit 2"; KO "K02604"; Scaffold002 rebuild exon 8000696 8000895 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8000969 8001211 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8001411 8001554 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8001662 8001755 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8001816 8001948 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8002035 8002327 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8002498 8002956 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild exon 8003045 8003068 . - . gene_id "RvY_06119"; transcript_id "RvY_06119.1"; Scaffold002 rebuild transcript 8005274 8008553 . - . gene_id "RvY_06120"; transcript_id "RvY_06120.1"; annotation "Dynein heavy chain 7, axonemal"; Pfam "[Dynein_heavy] Dynein heavy chain and region D6 of dynein motor|[AAA_9] ATP-binding dynein motor region D5"; similar_genes "DYH7_RAT(e-value:1.4e-99;bit-score:360.0)"; Scaffold002 rebuild exon 8005274 8006212 . - . gene_id "RvY_06120"; transcript_id "RvY_06120.1"; Scaffold002 rebuild exon 8006297 8007483 . - . gene_id "RvY_06120"; transcript_id "RvY_06120.1"; Scaffold002 rebuild exon 8007563 8008553 . - . gene_id "RvY_06120"; transcript_id "RvY_06120.1"; Scaffold002 rebuild transcript 8012865 8018112 . - . gene_id "RvY_06121"; transcript_id "RvY_06121.1"; annotation "Dynein heavy chain 7, axonemal"; Pfam "[AAA_5] AAA domain (dynein-related subfamily)|[AAA_6] Hydrolytic ATP binding site of dynein motor region D1|[DHC_N2] Dynein heavy chain, N-terminal region 2"; similar_genes "DYH7_HUMAN(e-value:2.2e-193;bit-score:671.0)"; Scaffold002 rebuild exon 8012865 8013232 . - . gene_id "RvY_06121"; transcript_id "RvY_06121.1"; Scaffold002 rebuild exon 8013831 8014487 . - . gene_id "RvY_06121"; transcript_id "RvY_06121.1"; Scaffold002 rebuild exon 8014790 8015683 . - . gene_id "RvY_06121"; transcript_id "RvY_06121.1"; Scaffold002 rebuild exon 8015943 8018112 . - . gene_id "RvY_06121"; transcript_id "RvY_06121.1"; Scaffold002 rebuild transcript 8020868 8030493 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; gene_name "tensin"; annotation "hypothetical protein."; Pfam "[PTEN_C2] C2 domain of PTEN tumour-suppressor protein|[PTB] Phosphotyrosine-binding domain|[SH2]"; CDD "Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; similar_genes "TENS4_MOUSE(e-value:2.1e-15;bit-score:80.0)"; Scaffold002 rebuild exon 8020868 8020901 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8021049 8021200 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8021273 8021395 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8021476 8021540 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8021630 8021713 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8021776 8021949 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8022186 8022394 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8022463 8022540 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8022937 8023200 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8025278 8025655 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8025952 8026419 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8026761 8027104 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8027366 8028167 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8028365 8028697 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8029027 8029557 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8029625 8029790 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8029861 8029974 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild exon 8030247 8030493 . + . gene_id "RvY_06122"; transcript_id "RvY_06122.1"; Scaffold002 rebuild transcript 8031052 8031633 . - . gene_id "RvY_06123"; transcript_id "RvY_06123.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8031052 8031633 . - . gene_id "RvY_06123"; transcript_id "RvY_06123.1"; Scaffold002 rebuild transcript 8031670 8033301 . - . gene_id "RvY_06124"; transcript_id "RvY_06124.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8031670 8031921 . - . gene_id "RvY_06124"; transcript_id "RvY_06124.1"; Scaffold002 rebuild exon 8031993 8032134 . - . gene_id "RvY_06124"; transcript_id "RvY_06124.1"; Scaffold002 rebuild exon 8032212 8032478 . - . gene_id "RvY_06124"; transcript_id "RvY_06124.1"; Scaffold002 rebuild exon 8032685 8032855 . - . gene_id "RvY_06124"; transcript_id "RvY_06124.1"; Scaffold002 rebuild exon 8032919 8033301 . - . gene_id "RvY_06124"; transcript_id "RvY_06124.1"; Scaffold002 rebuild transcript 8035693 8036227 . - . gene_id "RvY_06125"; transcript_id "RvY_06125.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8035693 8035814 . - . gene_id "RvY_06125"; transcript_id "RvY_06125.1"; Scaffold002 rebuild exon 8036077 8036227 . - . gene_id "RvY_06125"; transcript_id "RvY_06125.1"; Scaffold002 rebuild transcript 8036589 8050748 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; gene_name "MPDZ"; annotation "putative Patj homolog"; Pfam "[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; KO "K06095"; similar_genes "PATJ_DROME(e-value:1.9e-39;bit-score:160.0)"; Scaffold002 rebuild exon 8036589 8036604 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8036685 8036935 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8036999 8037088 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8037174 8037358 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8040064 8040277 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8040528 8040850 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8041141 8041465 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8041665 8041950 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8042022 8042113 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8042176 8042311 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8042586 8043047 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8043319 8043629 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8043693 8043806 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8044111 8044245 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8044360 8044458 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8044522 8044765 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8044839 8044948 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8045023 8045114 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8045311 8045466 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8046655 8047061 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8047326 8047357 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8047417 8047798 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8047857 8048056 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8048390 8048671 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8048742 8048867 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8049110 8049664 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild exon 8050032 8050748 . + . gene_id "RvY_06126"; transcript_id "RvY_06126.1"; Scaffold002 rebuild transcript 8038675 8038947 . - . gene_id "RvY_06127"; transcript_id "RvY_06127.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8038675 8038947 . - . gene_id "RvY_06127"; transcript_id "RvY_06127.1"; Scaffold002 rebuild transcript 8052259 8053257 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.1"; gene_name "(1)UBE2A"; annotation "(1)Ubiquitin-conjugating enzyme E2 B(2)putative Ubiquitin-conjugating enzyme E2 B"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "(1)K10573"; similar_genes "(1)UBE2B_HUMAN(e-value:6.3e-70;bit-score:261.0)(2)UBE2B_HUMAN(e-value:4.4e-41;bit-score:166.0)"; Scaffold002 rebuild exon 8052259 8052508 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.1"; Scaffold002 rebuild exon 8052582 8052638 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.1"; Scaffold002 rebuild exon 8052957 8052980 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.1"; Scaffold002 rebuild exon 8053043 8053257 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.1"; Scaffold002 rebuild transcript 8052536 8053257 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.2"; gene_name "(1)UBE2A"; annotation "(1)Ubiquitin-conjugating enzyme E2 B(2)putative Ubiquitin-conjugating enzyme E2 B"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "(1)K10573"; similar_genes "(1)UBE2B_HUMAN(e-value:6.3e-70;bit-score:261.0)(2)UBE2B_HUMAN(e-value:4.4e-41;bit-score:166.0)"; Scaffold002 rebuild exon 8052536 8052638 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.2"; Scaffold002 rebuild exon 8052957 8052980 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.2"; Scaffold002 rebuild exon 8053043 8053257 . - . gene_id "RvY_06128"; transcript_id "RvY_06128.2"; Scaffold002 rebuild transcript 8055386 8056450 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; gene_name "UBE2W"; annotation "putative Probable ubiquitin-conjugating enzyme E2 W"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K10688"; similar_genes "UBE2W_DANRE(e-value:1.3e-44;bit-score:177.0)"; Scaffold002 rebuild exon 8055386 8055415 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; Scaffold002 rebuild exon 8055509 8055609 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; Scaffold002 rebuild exon 8055742 8055824 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; Scaffold002 rebuild exon 8055909 8055975 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; Scaffold002 rebuild exon 8056164 8056334 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; Scaffold002 rebuild exon 8056423 8056450 . + . gene_id "RvY_06129"; transcript_id "RvY_06129.1"; Scaffold002 rebuild transcript 8057069 8059198 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; gene_name "GALRN"; annotation "putative Allatostatin-A receptor"; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04233"; similar_genes "AR_BOMMO(e-value:2.7e-30;bit-score:130.0)"; Scaffold002 rebuild exon 8057069 8057630 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; Scaffold002 rebuild exon 8057758 8057969 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; Scaffold002 rebuild exon 8058047 8058091 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; Scaffold002 rebuild exon 8058175 8058305 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; Scaffold002 rebuild exon 8058373 8058544 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; Scaffold002 rebuild exon 8058821 8059198 . - . gene_id "RvY_06130"; transcript_id "RvY_06130.1"; Scaffold002 rebuild transcript 8060354 8060845 . + . gene_id "RvY_06131"; transcript_id "RvY_06131.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8060354 8060845 . + . gene_id "RvY_06131"; transcript_id "RvY_06131.1"; Scaffold002 rebuild transcript 8062680 8065712 . - . gene_id "RvY_06132"; transcript_id "RvY_06132.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8062680 8062877 . - . gene_id "RvY_06132"; transcript_id "RvY_06132.1"; Scaffold002 rebuild exon 8063178 8063408 . - . gene_id "RvY_06132"; transcript_id "RvY_06132.1"; Scaffold002 rebuild exon 8065148 8065283 . - . gene_id "RvY_06132"; transcript_id "RvY_06132.1"; Scaffold002 rebuild exon 8065552 8065712 . - . gene_id "RvY_06132"; transcript_id "RvY_06132.1"; Scaffold002 rebuild transcript 8066535 8067501 . + . gene_id "RvY_06133"; transcript_id "RvY_06133.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8066535 8066597 . + . gene_id "RvY_06133"; transcript_id "RvY_06133.1"; Scaffold002 rebuild exon 8066659 8066908 . + . gene_id "RvY_06133"; transcript_id "RvY_06133.1"; Scaffold002 rebuild exon 8066977 8067039 . + . gene_id "RvY_06133"; transcript_id "RvY_06133.1"; Scaffold002 rebuild exon 8067107 8067501 . + . gene_id "RvY_06133"; transcript_id "RvY_06133.1"; Scaffold002 rebuild transcript 8068490 8071804 . + . gene_id "RvY_06134"; transcript_id "RvY_06134.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8068490 8068526 . + . gene_id "RvY_06134"; transcript_id "RvY_06134.1"; Scaffold002 rebuild exon 8068632 8068922 . + . gene_id "RvY_06134"; transcript_id "RvY_06134.1"; Scaffold002 rebuild exon 8069016 8069150 . + . gene_id "RvY_06134"; transcript_id "RvY_06134.1"; Scaffold002 rebuild exon 8069239 8069596 . + . gene_id "RvY_06134"; transcript_id "RvY_06134.1"; Scaffold002 rebuild exon 8071414 8071804 . + . gene_id "RvY_06134"; transcript_id "RvY_06134.1"; Scaffold002 rebuild transcript 8072320 8079418 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; gene_name "PH_CADPS"; annotation "Calcium-dependent secretion activator"; Pfam "[DUF1041] Domain of Unknown Function (DUF1041)"; CDD "CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains."; similar_genes "CAPS_DROME(e-value:7.5e-92;bit-score:334.0)"; Scaffold002 rebuild exon 8072320 8072517 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8072818 8073048 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8073120 8073203 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8074140 8074214 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8074286 8074321 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8074398 8074509 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8074594 8074749 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8075005 8075146 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8075211 8075379 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8075446 8075567 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8075639 8075683 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8075742 8075929 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8076025 8076126 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8076396 8076583 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8076642 8076778 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8076846 8077055 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8077134 8077242 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8077354 8077659 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8078095 8078341 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8078408 8078658 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8078772 8079008 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild exon 8079074 8079418 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.1"; Scaffold002 rebuild transcript 8074377 8078604 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; gene_name "PH_CADPS"; annotation "Calcium-dependent secretion activator"; Pfam "[DUF1041] Domain of Unknown Function (DUF1041)"; CDD "CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains."; similar_genes "CAPS_DROME(e-value:7.5e-92;bit-score:334.0)"; Scaffold002 rebuild exon 8074377 8074509 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8074594 8074749 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8075005 8075146 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8075211 8075379 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8075446 8075567 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8075639 8075683 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8075742 8075929 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8076025 8076126 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8076396 8076583 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8076642 8076778 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8076846 8077055 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8077134 8077242 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8077354 8077659 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8078095 8078341 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild exon 8078408 8078604 . - . gene_id "RvY_06135"; transcript_id "RvY_06135.2"; Scaffold002 rebuild transcript 8080960 8081666 . + . gene_id "RvY_06136"; transcript_id "RvY_06136.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8080960 8081139 . + . gene_id "RvY_06136"; transcript_id "RvY_06136.1"; Scaffold002 rebuild exon 8081358 8081666 . + . gene_id "RvY_06136"; transcript_id "RvY_06136.1"; Scaffold002 rebuild transcript 8082491 8097990 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8082491 8082644 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8082918 8083003 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8083063 8083351 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8083594 8083956 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8084025 8084621 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8084940 8085395 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8085707 8086157 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8086475 8087212 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8087542 8087904 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8087975 8088430 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8088696 8089073 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8089268 8089636 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8089903 8090370 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8090442 8090849 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8091124 8091701 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8091900 8091981 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8092068 8092188 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8092469 8092586 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8092661 8092782 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8092859 8093105 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8093308 8093622 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8093688 8093745 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8093990 8094255 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8094450 8094779 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8094871 8094952 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8095139 8095454 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild exon 8097937 8097990 . - . gene_id "RvY_06137"; transcript_id "RvY_06137.1"; Scaffold002 rebuild transcript 8103313 8104241 . + . gene_id "RvY_06138"; transcript_id "RvY_06138.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8103313 8103614 . + . gene_id "RvY_06138"; transcript_id "RvY_06138.1"; Scaffold002 rebuild exon 8103854 8104068 . + . gene_id "RvY_06138"; transcript_id "RvY_06138.1"; Scaffold002 rebuild exon 8104141 8104241 . + . gene_id "RvY_06138"; transcript_id "RvY_06138.1"; Scaffold002 rebuild transcript 8105467 8106165 . - . gene_id "RvY_06139"; transcript_id "RvY_06139.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8105467 8106165 . - . gene_id "RvY_06139"; transcript_id "RvY_06139.1"; Scaffold002 rebuild transcript 8106240 8108851 . - . gene_id "RvY_06140"; transcript_id "RvY_06140.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; similar_genes "KC1G3_BOVIN(e-value:1.1e-16;bit-score:85.0)"; Scaffold002 rebuild exon 8106240 8108146 . - . gene_id "RvY_06140"; transcript_id "RvY_06140.1"; Scaffold002 rebuild exon 8108329 8108851 . - . gene_id "RvY_06140"; transcript_id "RvY_06140.1"; Scaffold002 rebuild transcript 8109554 8111513 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8109554 8109736 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; Scaffold002 rebuild exon 8109828 8110099 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; Scaffold002 rebuild exon 8110195 8110345 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; Scaffold002 rebuild exon 8110411 8110659 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; Scaffold002 rebuild exon 8110727 8110950 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; Scaffold002 rebuild exon 8111267 8111513 . - . gene_id "RvY_06141"; transcript_id "RvY_06141.1"; Scaffold002 rebuild transcript 8112822 8117349 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8112822 8114208 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild exon 8114421 8114567 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild exon 8114789 8115173 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild exon 8115278 8115832 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild exon 8116132 8116677 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild exon 8116894 8117004 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild exon 8117079 8117349 . - . gene_id "RvY_06142"; transcript_id "RvY_06142.1"; Scaffold002 rebuild transcript 8119760 8123460 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; gene_name "Dnmt3b_related"; annotation "hypothetical protein."; Pfam "[PWWP]"; CDD "The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes."; Scaffold002 rebuild exon 8119760 8119884 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; Scaffold002 rebuild exon 8119945 8120205 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; Scaffold002 rebuild exon 8120513 8121371 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; Scaffold002 rebuild exon 8121597 8121743 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; Scaffold002 rebuild exon 8121823 8121865 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; Scaffold002 rebuild exon 8122997 8123460 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.1"; Scaffold002 rebuild transcript 8119760 8123460 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; gene_name "Dnmt3b_related"; annotation "hypothetical protein."; Pfam "[PWWP]"; CDD "The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes."; Scaffold002 rebuild exon 8119760 8119884 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild exon 8119945 8120205 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild exon 8120513 8120645 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild exon 8120706 8121371 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild exon 8121597 8121743 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild exon 8121823 8121865 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild exon 8122997 8123460 . + . gene_id "RvY_06143"; transcript_id "RvY_06143.2"; Scaffold002 rebuild transcript 8119912 8120082 . - . gene_id "RvY_06144"; transcript_id "RvY_06144.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8119912 8120082 . - . gene_id "RvY_06144"; transcript_id "RvY_06144.1"; Scaffold002 rebuild transcript 8125002 8125474 . + . gene_id "RvY_06145"; transcript_id "RvY_06145.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8125002 8125193 . + . gene_id "RvY_06145"; transcript_id "RvY_06145.1"; Scaffold002 rebuild exon 8125337 8125474 . + . gene_id "RvY_06145"; transcript_id "RvY_06145.1"; Scaffold002 rebuild transcript 8127791 8128393 . - . gene_id "RvY_06146"; transcript_id "RvY_06146.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8127791 8128393 . - . gene_id "RvY_06146"; transcript_id "RvY_06146.1"; Scaffold002 rebuild transcript 8136496 8137311 . - . gene_id "RvY_06147"; transcript_id "RvY_06147.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8136496 8136756 . - . gene_id "RvY_06147"; transcript_id "RvY_06147.1"; Scaffold002 rebuild exon 8136868 8137311 . - . gene_id "RvY_06147"; transcript_id "RvY_06147.1"; Scaffold002 rebuild transcript 8146257 8148113 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.1"; gene_name "PMP22_Claudin"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction|[PMP22_Claudin] PMP-22/EMP/MP20/Claudin family"; CDD "PMP-22/EMP/MP20/Claudin family."; Scaffold002 rebuild exon 8146257 8146500 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.1"; Scaffold002 rebuild exon 8146803 8146898 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.1"; Scaffold002 rebuild exon 8147128 8148113 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.1"; Scaffold002 rebuild transcript 8146270 8148113 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.2"; gene_name "PMP22_Claudin"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction|[PMP22_Claudin] PMP-22/EMP/MP20/Claudin family"; CDD "PMP-22/EMP/MP20/Claudin family."; Scaffold002 rebuild exon 8146270 8146277 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.2"; Scaffold002 rebuild exon 8146337 8146500 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.2"; Scaffold002 rebuild exon 8146803 8146898 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.2"; Scaffold002 rebuild exon 8147128 8148113 . + . gene_id "RvY_06148"; transcript_id "RvY_06148.2"; Scaffold002 rebuild transcript 8149577 8155394 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; annotation "hypothetical protein."; similar_genes "ZN704_DANRE(e-value:1.3e-08;bit-score:58.0)"; Scaffold002 rebuild exon 8149577 8149765 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild exon 8149863 8150199 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild exon 8150287 8150396 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild exon 8150459 8150769 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild exon 8150990 8151336 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild exon 8152798 8153113 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild exon 8155136 8155394 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.1"; Scaffold002 rebuild transcript 8149577 8151823 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; annotation "hypothetical protein."; similar_genes "ZN704_DANRE(e-value:1.3e-08;bit-score:58.0)"; Scaffold002 rebuild exon 8149577 8149765 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; Scaffold002 rebuild exon 8149863 8150199 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; Scaffold002 rebuild exon 8150287 8150396 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; Scaffold002 rebuild exon 8150459 8150769 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; Scaffold002 rebuild exon 8150990 8151336 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; Scaffold002 rebuild exon 8151807 8151823 . - . gene_id "RvY_06149"; transcript_id "RvY_06149.2"; Scaffold002 rebuild transcript 8159290 8164242 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; gene_name "(1,2)PBP1_Speract_GC_like(3)CYCc"; annotation "Speract receptor"; Pfam "(1,2)[Peripla_BP_6] Periplasmic binding protein|(1,2)[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY_STRPU(e-value:4.7e-85;bit-score:312.0)(2)GCY_STRPU(e-value:2.3e-59;bit-score:226.0)(3)GCY_STRPU(e-value:2.5e-88;bit-score:323.0)"; Scaffold002 rebuild exon 8159290 8159479 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8159566 8159695 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8159981 8160290 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8160355 8160433 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8160609 8160755 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8160823 8161319 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8161575 8161756 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8161818 8162142 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8162207 8162377 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8162584 8163089 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8163147 8163287 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8163361 8163484 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8163539 8163634 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8163701 8163868 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8163932 8163960 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild exon 8164044 8164242 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.1"; Scaffold002 rebuild transcript 8159290 8163916 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; gene_name "(1,2)PBP1_Speract_GC_like(3)CYCc"; annotation "Speract receptor"; Pfam "(1,2)[Peripla_BP_6] Periplasmic binding protein|(1,2)[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY_STRPU(e-value:4.7e-85;bit-score:312.0)(2)GCY_STRPU(e-value:2.3e-59;bit-score:226.0)(3)GCY_STRPU(e-value:2.5e-88;bit-score:323.0)"; Scaffold002 rebuild exon 8159290 8159479 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8159566 8159695 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8159981 8160290 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8160355 8160433 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8160609 8160755 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8160823 8161319 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8161575 8161756 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8161818 8162142 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8162207 8162377 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8162584 8163089 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8163147 8163287 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8163361 8163484 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8163539 8163634 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild exon 8163701 8163916 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.2"; Scaffold002 rebuild transcript 8162207 8164832 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; gene_name "(1,2)PBP1_Speract_GC_like(3)CYCc"; annotation "Speract receptor"; Pfam "(1,2)[Peripla_BP_6] Periplasmic binding protein|(1,2)[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2)Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.(3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY_STRPU(e-value:4.7e-85;bit-score:312.0)(2)GCY_STRPU(e-value:2.3e-59;bit-score:226.0)(3)GCY_STRPU(e-value:2.5e-88;bit-score:323.0)"; Scaffold002 rebuild exon 8162207 8162377 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8162584 8163089 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8163147 8163287 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8163361 8163484 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8163539 8163634 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8163701 8163868 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8163932 8163960 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8164044 8164186 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8164239 8164493 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild exon 8164594 8164832 . + . gene_id "RvY_06150"; transcript_id "RvY_06150.3"; Scaffold002 rebuild transcript 8165338 8166970 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8165338 8165945 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; Scaffold002 rebuild exon 8166031 8166106 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; Scaffold002 rebuild exon 8166257 8166292 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; Scaffold002 rebuild exon 8166376 8166411 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; Scaffold002 rebuild exon 8166564 8166620 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; Scaffold002 rebuild exon 8166698 8166970 . - . gene_id "RvY_06151"; transcript_id "RvY_06151.1"; Scaffold002 rebuild transcript 8167518 8167733 . + . gene_id "RvY_06152"; transcript_id "RvY_06152.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8167518 8167733 . + . gene_id "RvY_06152"; transcript_id "RvY_06152.1"; Scaffold002 rebuild transcript 8169803 8173739 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; annotation "hypothetical protein."; Pfam "(1)[I-set] Immunoglobulin I-set domain|[Spectrin] Spectrin repeat"; Scaffold002 rebuild exon 8169803 8169892 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8170007 8170198 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8170290 8170380 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8170512 8170891 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8171216 8171764 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8171928 8172365 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8172493 8172804 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8172874 8172963 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild exon 8173038 8173739 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.1"; Scaffold002 rebuild transcript 8169491 8172440 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; annotation "hypothetical protein."; Pfam "(1)[I-set] Immunoglobulin I-set domain|[Spectrin] Spectrin repeat"; Scaffold002 rebuild exon 8169491 8169625 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild exon 8169770 8169892 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild exon 8170007 8170198 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild exon 8170290 8170380 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild exon 8170512 8170891 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild exon 8171216 8171764 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild exon 8171928 8172440 . + . gene_id "RvY_06153"; transcript_id "RvY_06153.2"; Scaffold002 rebuild transcript 8177440 8222893 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; annotation "putative Titin"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; similar_genes "TITIN_DROME(e-value:1.8e-27;bit-score:120.0)"; Scaffold002 rebuild exon 8177440 8177773 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8178132 8178515 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8178740 8179251 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8179685 8179896 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8179977 8180226 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8180295 8180721 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8180790 8181120 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8181570 8181934 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8182194 8182525 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8182597 8182881 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8183104 8183734 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8184070 8184462 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8184669 8184857 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8184930 8185154 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8185228 8185791 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8186121 8186543 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8186636 8186719 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8186943 8187610 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8187859 8188299 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8191726 8192050 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8192402 8193838 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8194125 8194558 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8194724 8195158 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8195339 8196119 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8196370 8197292 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8197592 8198317 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8198376 8199407 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8199633 8199921 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8199992 8200288 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8200597 8200794 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8200879 8205228 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8205294 8205583 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8205735 8206857 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8206941 8207318 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8207408 8207923 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8207999 8208340 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8208414 8209049 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8209319 8209980 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8210704 8213389 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8213473 8213850 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8213929 8214444 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8214528 8215151 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8215212 8215639 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8215719 8216471 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8216584 8217268 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8217378 8218244 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8218411 8220960 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8221173 8221255 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild exon 8221316 8222893 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.1"; Scaffold002 rebuild transcript 8174740 8222893 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; annotation "putative Titin"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; similar_genes "TITIN_DROME(e-value:1.8e-27;bit-score:120.0)"; Scaffold002 rebuild exon 8174740 8174824 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8176071 8176486 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8177431 8177773 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8178132 8178515 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8178740 8179251 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8179685 8179896 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8179977 8180226 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8180295 8180721 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8180790 8181120 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8181570 8181934 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8182194 8182525 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8182597 8182881 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8183104 8183734 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8184070 8184462 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8184669 8184857 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8184930 8185154 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8185228 8185791 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8186121 8186543 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8186636 8186719 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8186943 8187610 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8187859 8192050 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8192402 8193838 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8194125 8194558 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8194724 8195158 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8195339 8196119 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8196370 8197292 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8197592 8198317 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8198376 8199407 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8199633 8199921 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8199992 8200288 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8200597 8200794 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8200879 8205228 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8205294 8205583 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8205735 8206857 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8213473 8213850 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8213929 8214444 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8214528 8215151 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8215212 8215639 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8215719 8216471 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8216584 8217268 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8217378 8218244 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8218411 8220960 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8221173 8221255 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild exon 8221316 8222893 . + . gene_id "RvY_06154"; transcript_id "RvY_06154.2"; Scaffold002 rebuild transcript 8222920 8246869 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Herpes_gI] Alphaherpesvirus glycoprotein I|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|[Herpes_gE] Alphaherpesvirus glycoprotein E|[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Receptor_2B4] Natural killer cell receptor 2B4|[Kdo] Lipopolysaccharide kinase (Kdo/WaaP) family"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; similar_genes "UNC89_CAEEL(e-value:4.6e-11;bit-score:66.0)"; Scaffold002 rebuild exon 8222920 8223141 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8223399 8224790 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8224876 8225013 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8225078 8226320 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8226383 8226773 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8227010 8227419 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8227626 8228393 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8228628 8229127 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8229302 8231036 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8231460 8232743 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8233000 8233335 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8233589 8234311 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8234377 8235069 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8235256 8235906 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8236111 8237141 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8237245 8238178 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8238374 8238957 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8239217 8239560 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8239634 8239806 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8239870 8240644 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8240916 8242309 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8242570 8243438 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8243745 8243981 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8244042 8244513 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8244760 8245009 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8245082 8245363 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8245608 8246068 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8246310 8246385 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8246450 8246599 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild exon 8246662 8246869 . + . gene_id "RvY_06155"; transcript_id "RvY_06155.1"; Scaffold002 rebuild transcript 8247391 8249852 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; gene_name "CREB3"; annotation "cAMP response element-binding protein 3"; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; CDD "basic region leucin zipper."; KO "K09048"; similar_genes "CR3L3_HUMAN(e-value:1.1e-22;bit-score:104.0)"; Scaffold002 rebuild exon 8247391 8247647 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; Scaffold002 rebuild exon 8247982 8248102 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; Scaffold002 rebuild exon 8248237 8248449 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; Scaffold002 rebuild exon 8248876 8249189 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; Scaffold002 rebuild exon 8249471 8249687 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; Scaffold002 rebuild exon 8249748 8249852 . - . gene_id "RvY_06156"; transcript_id "RvY_06156.1"; Scaffold002 rebuild transcript 8250882 8252903 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8250882 8251099 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; Scaffold002 rebuild exon 8251348 8251440 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; Scaffold002 rebuild exon 8251506 8251584 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; Scaffold002 rebuild exon 8251651 8252051 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; Scaffold002 rebuild exon 8252299 8252539 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; Scaffold002 rebuild exon 8252745 8252903 . + . gene_id "RvY_06157"; transcript_id "RvY_06157.1"; Scaffold002 rebuild transcript 8252984 8256328 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; gene_name "TIGR00376"; annotation "hypothetical protein."; Pfam "[AAA_11] AAA domain|[AAA_12] AAA domain|[AAA_30] AAA domain"; CDD "DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases."; KO "(1)K13983"; Scaffold002 rebuild exon 8252984 8253094 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8253158 8253260 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8253351 8253710 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8254166 8254476 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8254742 8254914 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8254980 8255175 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8255550 8255818 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild exon 8256094 8256328 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.1"; Scaffold002 rebuild transcript 8252945 8256328 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; gene_name "TIGR00376"; annotation "hypothetical protein."; Pfam "[AAA_11] AAA domain|[AAA_12] AAA domain|[AAA_30] AAA domain"; CDD "DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases."; KO "(1)K13983"; Scaffold002 rebuild exon 8252945 8253094 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8253158 8253260 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8253543 8253710 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8254166 8254476 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8254742 8254914 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8254980 8255175 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8255550 8255818 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild exon 8256094 8256328 . + . gene_id "RvY_06158"; transcript_id "RvY_06158.2"; Scaffold002 rebuild transcript 8261889 8264592 . + . gene_id "RvY_06159"; transcript_id "RvY_06159.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8261889 8262307 . + . gene_id "RvY_06159"; transcript_id "RvY_06159.1"; Scaffold002 rebuild exon 8262937 8263138 . + . gene_id "RvY_06159"; transcript_id "RvY_06159.1"; Scaffold002 rebuild exon 8264464 8264592 . + . gene_id "RvY_06159"; transcript_id "RvY_06159.1"; Scaffold002 rebuild transcript 8275524 8275796 . - . gene_id "RvY_06160"; transcript_id "RvY_06160.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8275524 8275796 . - . gene_id "RvY_06160"; transcript_id "RvY_06160.1"; Scaffold002 rebuild transcript 8275994 8276463 . + . gene_id "RvY_06161"; transcript_id "RvY_06161.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold002 rebuild exon 8275994 8276130 . + . gene_id "RvY_06161"; transcript_id "RvY_06161.1"; Scaffold002 rebuild exon 8276196 8276463 . + . gene_id "RvY_06161"; transcript_id "RvY_06161.1"; Scaffold002 rebuild transcript 8276690 8277846 . + . gene_id "RvY_06162"; transcript_id "RvY_06162.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8276690 8277122 . + . gene_id "RvY_06162"; transcript_id "RvY_06162.1"; Scaffold002 rebuild exon 8277761 8277846 . + . gene_id "RvY_06162"; transcript_id "RvY_06162.1"; Scaffold002 rebuild transcript 8279662 8281654 . - . gene_id "RvY_06163"; transcript_id "RvY_06163.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; similar_genes "KC11_YEAST(e-value:2.3e-25;bit-score:113.0)"; Scaffold002 rebuild exon 8279662 8279988 . - . gene_id "RvY_06163"; transcript_id "RvY_06163.1"; Scaffold002 rebuild exon 8280304 8280683 . - . gene_id "RvY_06163"; transcript_id "RvY_06163.1"; Scaffold002 rebuild exon 8280742 8281654 . - . gene_id "RvY_06163"; transcript_id "RvY_06163.1"; Scaffold002 rebuild transcript 8282436 8284553 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; gene_name "WD40"; annotation "Ribosome biogenesis protein WDR12 homolog"; Pfam "[WD40] WD domain, G-beta repeat|[NLE] NLE (NUC135) domain"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14863"; similar_genes "WDR12_IXOSC(e-value:9.7e-56;bit-score:214.0)"; Scaffold002 rebuild exon 8282436 8282568 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild exon 8282666 8282798 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild exon 8283046 8283292 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild exon 8283439 8283561 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild exon 8283624 8283992 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild exon 8284202 8284308 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild exon 8284394 8284553 . - . gene_id "RvY_06164"; transcript_id "RvY_06164.1"; Scaffold002 rebuild transcript 8285362 8289179 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; gene_name "(1,2)ATPS(3)cysC"; annotation "(1,2)Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase(3)Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1"; Pfam "[PUA_2] PUA-like domain|(1,2)[ATP-sulfurylase]|[AAA_17] AAA domain|[APS_kinase] Adenylylsulphate kinase|[AAA_33] AAA domain"; CDD "(1,2)ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a homodimer, or a homo-oligomer, depending on the organism. ATPS belongs to a large superfamily of nucleotidyltransferases that includes pantothenate synthetase (PanC), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.(3)adenylylsulfate kinase; Provisional"; EC "(1,2)EC2.7.7.4(3)EC2.7.1.25|EC2.7.7.4"; KO "(1,2)K13811(3)K00860"; similar_genes "(1,2)PAPSS_URECA(e-value:5.5e-156;bit-score:547.0)(3)PAPS1_HUMAN(e-value:1.4e-67;bit-score:254.0)"; Scaffold002 rebuild exon 8285362 8285598 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8285945 8286213 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8286544 8286673 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8286757 8286888 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8287159 8287375 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8287435 8287768 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8287844 8287982 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8288042 8288277 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8288421 8288529 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild exon 8289096 8289179 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.1"; Scaffold002 rebuild transcript 8285362 8288644 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; gene_name "(1,2)ATPS(3)cysC"; annotation "(1,2)Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase(3)Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1"; Pfam "[PUA_2] PUA-like domain|(1,2)[ATP-sulfurylase]|[AAA_17] AAA domain|[APS_kinase] Adenylylsulphate kinase|[AAA_33] AAA domain"; CDD "(1,2)ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a homodimer, or a homo-oligomer, depending on the organism. ATPS belongs to a large superfamily of nucleotidyltransferases that includes pantothenate synthetase (PanC), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.(3)adenylylsulfate kinase; Provisional"; EC "(1,2)EC2.7.7.4(3)EC2.7.1.25|EC2.7.7.4"; KO "(1,2)K13811(3)K00860"; similar_genes "(1,2)PAPSS_URECA(e-value:5.5e-156;bit-score:547.0)(3)PAPS1_HUMAN(e-value:1.4e-67;bit-score:254.0)"; Scaffold002 rebuild exon 8285362 8285598 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8285945 8286213 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8286544 8286673 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8286757 8286888 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8287159 8287375 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8287435 8287768 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8287844 8287982 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8288042 8288277 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8288421 8288529 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild exon 8288600 8288644 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.2"; Scaffold002 rebuild transcript 8287144 8289179 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; gene_name "(1,2)ATPS(3)cysC"; annotation "(1,2)Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase(3)Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1"; Pfam "[PUA_2] PUA-like domain|(1,2)[ATP-sulfurylase]|[AAA_17] AAA domain|[APS_kinase] Adenylylsulphate kinase|[AAA_33] AAA domain"; CDD "(1,2)ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a homodimer, or a homo-oligomer, depending on the organism. ATPS belongs to a large superfamily of nucleotidyltransferases that includes pantothenate synthetase (PanC), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.(3)adenylylsulfate kinase; Provisional"; EC "(1,2)EC2.7.7.4(3)EC2.7.1.25|EC2.7.7.4"; KO "(1,2)K13811(3)K00860"; similar_genes "(1,2)PAPSS_URECA(e-value:5.5e-156;bit-score:547.0)(3)PAPS1_HUMAN(e-value:1.4e-67;bit-score:254.0)"; Scaffold002 rebuild exon 8287144 8287375 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; Scaffold002 rebuild exon 8287435 8287768 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; Scaffold002 rebuild exon 8287844 8287982 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; Scaffold002 rebuild exon 8288042 8288277 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; Scaffold002 rebuild exon 8288421 8288529 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; Scaffold002 rebuild exon 8289096 8289179 . - . gene_id "RvY_06165"; transcript_id "RvY_06165.3"; Scaffold002 rebuild transcript 8290248 8290466 . + . gene_id "RvY_06166"; transcript_id "RvY_06166.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8290248 8290466 . + . gene_id "RvY_06166"; transcript_id "RvY_06166.1"; Scaffold002 rebuild transcript 8291705 8292562 . + . gene_id "RvY_06167"; transcript_id "RvY_06167.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8291705 8292562 . + . gene_id "RvY_06167"; transcript_id "RvY_06167.1"; Scaffold002 rebuild transcript 8298188 8298376 . - . gene_id "RvY_06168"; transcript_id "RvY_06168.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8298188 8298376 . - . gene_id "RvY_06168"; transcript_id "RvY_06168.1"; Scaffold002 rebuild transcript 8300843 8301091 . - . gene_id "RvY_06169"; transcript_id "RvY_06169.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8300843 8301091 . - . gene_id "RvY_06169"; transcript_id "RvY_06169.1"; Scaffold002 rebuild transcript 8303913 8306336 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; annotation "hypothetical protein."; Pfam "[MH2]|[MH1]"; similar_genes "SMAD9_HUMAN(e-value:3.4e-24;bit-score:109.0)"; Scaffold002 rebuild exon 8303913 8304155 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; Scaffold002 rebuild exon 8304373 8304547 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; Scaffold002 rebuild exon 8304918 8305145 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; Scaffold002 rebuild exon 8305251 8305385 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; Scaffold002 rebuild exon 8305448 8305684 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; Scaffold002 rebuild exon 8305930 8306336 . + . gene_id "RvY_06170"; transcript_id "RvY_06170.1"; Scaffold002 rebuild transcript 8306909 8309736 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "SYT11_RAT(e-value:5.7e-22;bit-score:102.0)"; Scaffold002 rebuild exon 8306909 8307222 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; Scaffold002 rebuild exon 8307600 8307723 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; Scaffold002 rebuild exon 8307972 8308176 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; Scaffold002 rebuild exon 8308410 8308758 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; Scaffold002 rebuild exon 8308950 8309267 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; Scaffold002 rebuild exon 8309712 8309736 . - . gene_id "RvY_06171"; transcript_id "RvY_06171.1"; Scaffold002 rebuild transcript 8311505 8313126 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; gene_name "LUC7L2"; annotation "Putative RNA-binding protein Luc7-like 1"; Pfam "[LUC7] LUC7 N_terminus"; CDD "LUC7 N_terminus. This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP)."; KO "K13212"; similar_genes "LUC7L_MOUSE(e-value:1.9e-73;bit-score:273.0)"; Scaffold002 rebuild exon 8311505 8311664 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8311743 8311855 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8311925 8312101 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8312169 8312312 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8312374 8312484 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8312551 8312649 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8312925 8313016 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild exon 8313072 8313126 . - . gene_id "RvY_06172"; transcript_id "RvY_06172.1"; Scaffold002 rebuild transcript 8313973 8316022 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold002 rebuild exon 8313973 8314060 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8314131 8314221 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8314288 8314521 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8314610 8314750 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8314814 8314945 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8315015 8315203 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8315427 8315781 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild exon 8315846 8316022 . - . gene_id "RvY_06173"; transcript_id "RvY_06173.1"; Scaffold002 rebuild transcript 8320616 8321149 . + . gene_id "RvY_06174"; transcript_id "RvY_06174.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold002 rebuild exon 8320616 8321149 . + . gene_id "RvY_06174"; transcript_id "RvY_06174.1"; Scaffold002 rebuild transcript 8321620 8323356 . - . gene_id "RvY_06175"; transcript_id "RvY_06175.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8321620 8322866 . - . gene_id "RvY_06175"; transcript_id "RvY_06175.1"; Scaffold002 rebuild exon 8323063 8323225 . - . gene_id "RvY_06175"; transcript_id "RvY_06175.1"; Scaffold002 rebuild exon 8323300 8323356 . - . gene_id "RvY_06175"; transcript_id "RvY_06175.1"; Scaffold002 rebuild transcript 8324887 8325915 . + . gene_id "RvY_06176"; transcript_id "RvY_06176.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; EC "EC2.4.1.-"; similar_genes "B3GN7_MOUSE(e-value:5.8e-07;bit-score:52.0)"; Scaffold002 rebuild exon 8324887 8325915 . + . gene_id "RvY_06176"; transcript_id "RvY_06176.1"; Scaffold002 rebuild transcript 8326948 8329066 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; gene_name "PrsA"; annotation "Phosphoribosyl pyrophosphate synthase-associated protein 2"; Pfam "[Pribosyltran_N] N-terminal domain of ribose phosphate pyrophosphokinase"; CDD "Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]"; similar_genes "KPRB_XENTR(e-value:9.3e-67;bit-score:251.0)"; Scaffold002 rebuild exon 8326948 8327018 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8327102 8327154 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8327340 8327406 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8327494 8327666 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8327756 8327871 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8328157 8328382 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8328448 8328665 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild exon 8328911 8329066 . + . gene_id "RvY_06177"; transcript_id "RvY_06177.1"; Scaffold002 rebuild transcript 8329361 8331009 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; annotation "hypothetical protein."; Pfam "[PITH]|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_8] Thioredoxin-like|[Thioredoxin]"; similar_genes "THIO_RHOSH(e-value:2.4e-14;bit-score:77.0)"; Scaffold002 rebuild exon 8329361 8329393 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8329466 8329570 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8329655 8329733 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8329807 8329967 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8330229 8330348 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8330416 8330580 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8330746 8330845 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild exon 8330915 8331009 . - . gene_id "RvY_06178"; transcript_id "RvY_06178.1"; Scaffold002 rebuild transcript 8331669 8332295 . - . gene_id "RvY_06179"; transcript_id "RvY_06179.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8331669 8332006 . - . gene_id "RvY_06179"; transcript_id "RvY_06179.1"; Scaffold002 rebuild exon 8332066 8332169 . - . gene_id "RvY_06179"; transcript_id "RvY_06179.1"; Scaffold002 rebuild exon 8332240 8332295 . - . gene_id "RvY_06179"; transcript_id "RvY_06179.1"; Scaffold002 rebuild transcript 8332787 8337977 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; gene_name "NCAPG2"; annotation "condensin-2 complex subunit G2"; Pfam "[Condensin2nSMC] Condensin II non structural maintenance of chromosomes subunit"; KO "K11492"; Scaffold002 rebuild exon 8332787 8332932 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8332989 8333064 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8333128 8333325 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8333431 8333547 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8333619 8333789 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8334132 8334428 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8334705 8334877 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8334950 8335262 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8335481 8335747 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8335980 8336180 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8336258 8336404 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8336657 8336779 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8336840 8337112 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8337177 8337343 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8337536 8337791 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild exon 8337852 8337977 . - . gene_id "RvY_06180"; transcript_id "RvY_06180.1"; Scaffold002 rebuild transcript 8338601 8345004 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; gene_name "(1)HISPPD(2)HP_HAP_like"; annotation "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase"; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; CDD "(2)Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord."; EC "(1)EC2.7.4.21|EC2.7.4.24(2)EC2.7.4.21"; KO "(1)K13024"; similar_genes "VIP1_DROME(e-value:3.5e-151;bit-score:531.0)"; Scaffold002 rebuild exon 8338601 8338996 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8339201 8339532 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8339630 8339870 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8339932 8340046 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8340114 8340262 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8340540 8340836 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8340906 8340941 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8341012 8341255 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8341568 8341830 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8341893 8342005 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8342138 8342346 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8342434 8342703 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8343171 8343300 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8343395 8343448 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8343524 8343578 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8343650 8343968 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8344255 8344419 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild exon 8344673 8345004 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.1"; Scaffold002 rebuild transcript 8338601 8342366 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; gene_name "(1)HISPPD(2)HP_HAP_like"; annotation "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase"; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; CDD "(2)Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord."; EC "(1)EC2.7.4.21|EC2.7.4.24(2)EC2.7.4.21"; KO "(1)K13024"; similar_genes "VIP1_DROME(e-value:3.5e-151;bit-score:531.0)"; Scaffold002 rebuild exon 8338601 8338996 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8339201 8339532 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8339630 8339870 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8339932 8340046 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8340114 8340262 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8340540 8340836 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8340906 8340941 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8341012 8341255 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8341568 8341830 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8341893 8342005 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild exon 8342138 8342366 . + . gene_id "RvY_06181"; transcript_id "RvY_06181.2"; Scaffold002 rebuild transcript 8347381 8347731 . - . gene_id "RvY_06182"; transcript_id "RvY_06182.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8347381 8347731 . - . gene_id "RvY_06182"; transcript_id "RvY_06182.1"; Scaffold002 rebuild transcript 8349239 8349618 . + . gene_id "RvY_06183"; transcript_id "RvY_06183.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8349239 8349356 . + . gene_id "RvY_06183"; transcript_id "RvY_06183.1"; Scaffold002 rebuild exon 8349431 8349618 . + . gene_id "RvY_06183"; transcript_id "RvY_06183.1"; Scaffold002 rebuild transcript 8349724 8349915 . - . gene_id "RvY_06184"; transcript_id "RvY_06184.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8349724 8349915 . - . gene_id "RvY_06184"; transcript_id "RvY_06184.1"; Scaffold002 rebuild transcript 8350289 8350582 . + . gene_id "RvY_06185"; transcript_id "RvY_06185.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8350289 8350582 . + . gene_id "RvY_06185"; transcript_id "RvY_06185.1"; Scaffold002 rebuild transcript 8357671 8358066 . - . gene_id "RvY_06186"; transcript_id "RvY_06186.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold002 rebuild exon 8357671 8358066 . - . gene_id "RvY_06186"; transcript_id "RvY_06186.1"; Scaffold002 rebuild transcript 8358229 8358687 . - . gene_id "RvY_06187"; transcript_id "RvY_06187.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8358229 8358687 . - . gene_id "RvY_06187"; transcript_id "RvY_06187.1"; Scaffold002 rebuild transcript 8362191 8362487 . - . gene_id "RvY_06188"; transcript_id "RvY_06188.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8362191 8362487 . - . gene_id "RvY_06188"; transcript_id "RvY_06188.1"; Scaffold002 rebuild transcript 8364545 8364775 . - . gene_id "RvY_06189"; transcript_id "RvY_06189.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8364545 8364775 . - . gene_id "RvY_06189"; transcript_id "RvY_06189.1"; Scaffold002 rebuild transcript 8366442 8367336 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8366442 8366672 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.1"; Scaffold002 rebuild exon 8366746 8366994 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.1"; Scaffold002 rebuild exon 8367199 8367336 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.1"; Scaffold002 rebuild transcript 8366408 8366858 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8366408 8366672 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.2"; Scaffold002 rebuild exon 8366746 8366858 . - . gene_id "RvY_06190"; transcript_id "RvY_06190.2"; Scaffold002 rebuild transcript 8369949 8371342 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; gene_name "RAP1A"; annotation "Ras-related protein Rap-1b"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; KO "K04353"; similar_genes "RAP1B_XENTR(e-value:1.4e-88;bit-score:323.0)"; Scaffold002 rebuild exon 8369949 8370038 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild exon 8370326 8370469 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild exon 8370552 8370692 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild exon 8370759 8370815 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild exon 8370880 8370893 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild exon 8371056 8371110 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild exon 8371286 8371342 . - . gene_id "RvY_06191"; transcript_id "RvY_06191.1"; Scaffold002 rebuild transcript 8374373 8378973 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; annotation "hypothetical protein."; Pfam "[CSD] 'Cold-shock' DNA-binding domain"; Scaffold002 rebuild exon 8374373 8374465 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8374757 8375080 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8375149 8375315 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8375685 8375874 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8375958 8376125 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8376293 8376559 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8376704 8376867 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8376954 8377204 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8377283 8377464 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8377749 8377906 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8377966 8378121 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8378221 8378479 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild exon 8378692 8378973 . + . gene_id "RvY_06192"; transcript_id "RvY_06192.1"; Scaffold002 rebuild transcript 8379696 8388153 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; gene_name "MAP4K4"; annotation "Traf2 and NCK-interacting protein kinase"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[CNH]"; CDD "Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals."; EC "EC2.7.11.1"; KO "K04407"; similar_genes "TNIK_MOUSE(e-value:5.2e-148;bit-score:521.0)"; Scaffold002 rebuild exon 8379696 8379728 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8380003 8380229 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8380295 8380369 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8380643 8380715 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8380803 8380961 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8381198 8381523 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8381790 8381994 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8382062 8382301 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8382801 8383072 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8383170 8383244 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8383385 8383704 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8384010 8384344 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8384595 8384834 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8385096 8385259 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8385328 8385681 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8386299 8386353 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8386495 8386563 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8386822 8386974 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8387235 8387345 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8387460 8387540 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8387738 8387839 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8387934 8387999 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild exon 8388055 8388153 . - . gene_id "RvY_06193"; transcript_id "RvY_06193.1"; Scaffold002 rebuild transcript 8389138 8390288 . - . gene_id "RvY_06194"; transcript_id "RvY_06194.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8389138 8389335 . - . gene_id "RvY_06194"; transcript_id "RvY_06194.1"; Scaffold002 rebuild exon 8389403 8389459 . - . gene_id "RvY_06194"; transcript_id "RvY_06194.1"; Scaffold002 rebuild exon 8389822 8390169 . - . gene_id "RvY_06194"; transcript_id "RvY_06194.1"; Scaffold002 rebuild exon 8390241 8390288 . - . gene_id "RvY_06194"; transcript_id "RvY_06194.1"; Scaffold002 rebuild transcript 8390868 8394415 . + . gene_id "RvY_06195"; transcript_id "RvY_06195.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8390868 8390979 . + . gene_id "RvY_06195"; transcript_id "RvY_06195.1"; Scaffold002 rebuild exon 8391055 8391302 . + . gene_id "RvY_06195"; transcript_id "RvY_06195.1"; Scaffold002 rebuild exon 8391511 8393608 . + . gene_id "RvY_06195"; transcript_id "RvY_06195.1"; Scaffold002 rebuild exon 8393688 8394415 . + . gene_id "RvY_06195"; transcript_id "RvY_06195.1"; Scaffold002 rebuild transcript 8394745 8396514 . - . gene_id "RvY_06196"; transcript_id "RvY_06196.1"; gene_name "TY"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; CDD "Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases"; Scaffold002 rebuild exon 8394745 8395424 . - . gene_id "RvY_06196"; transcript_id "RvY_06196.1"; Scaffold002 rebuild exon 8395537 8395921 . - . gene_id "RvY_06196"; transcript_id "RvY_06196.1"; Scaffold002 rebuild exon 8396392 8396514 . - . gene_id "RvY_06196"; transcript_id "RvY_06196.1"; Scaffold002 rebuild transcript 8396840 8397361 . + . gene_id "RvY_06197"; transcript_id "RvY_06197.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8396840 8397099 . + . gene_id "RvY_06197"; transcript_id "RvY_06197.1"; Scaffold002 rebuild exon 8397157 8397361 . + . gene_id "RvY_06197"; transcript_id "RvY_06197.1"; Scaffold002 rebuild transcript 8397371 8397943 . - . gene_id "RvY_06198"; transcript_id "RvY_06198.1"; gene_name "tauD"; annotation "hypothetical protein."; Pfam "[TauD] Taurine catabolism dioxygenase TauD, TfdA family"; CDD "taurine dioxygenase; Reviewed"; EC "EC1.14.11.17"; similar_genes "TAUD_ECOLI(e-value:7.9e-11;bit-score:65.0)"; Scaffold002 rebuild exon 8397371 8397943 . - . gene_id "RvY_06198"; transcript_id "RvY_06198.1"; Scaffold002 rebuild transcript 8399088 8399691 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8399088 8399172 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.1"; Scaffold002 rebuild exon 8399256 8399311 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.1"; Scaffold002 rebuild exon 8399380 8399442 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.1"; Scaffold002 rebuild exon 8399527 8399691 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.1"; Scaffold002 rebuild transcript 8399397 8399813 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8399397 8399442 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.2"; Scaffold002 rebuild exon 8399527 8399813 . + . gene_id "RvY_06199"; transcript_id "RvY_06199.2"; Scaffold002 rebuild transcript 8400496 8404808 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; annotation "putative Semaphorin-2A"; Pfam "[Sema]"; similar_genes "SEM2A_SCHGR(e-value:3.1e-29;bit-score:126.0)"; Scaffold002 rebuild exon 8400496 8400525 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8400609 8400721 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8400983 8401333 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8401405 8401583 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8401777 8402078 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8402474 8402818 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8403162 8403283 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8403368 8403529 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8403825 8404038 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8404131 8404187 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8404365 8404416 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8404533 8404620 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild exon 8404706 8404808 . - . gene_id "RvY_06200"; transcript_id "RvY_06200.1"; Scaffold002 rebuild transcript 8406560 8407975 . + . gene_id "RvY_06201"; transcript_id "RvY_06201.1"; gene_name "rne"; annotation "hypothetical protein."; CDD "ribonuclease E; Reviewed"; similar_genes "MUC1_XENLA(e-value:6.5e-21;bit-score:99.0)"; Scaffold002 rebuild exon 8406560 8407975 . + . gene_id "RvY_06201"; transcript_id "RvY_06201.1"; Scaffold002 rebuild transcript 8409418 8414608 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.1"; gene_name "PRK08026"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "flagellin; Validated"; similar_genes "(1,2)MUC1_XENLA(e-value:1.3e-19;bit-score:94.0)(3)MUC1_XENLA(e-value:3.3e-20;bit-score:96.0)"; Scaffold002 rebuild exon 8409418 8410375 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.1"; Scaffold002 rebuild exon 8411406 8411471 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.1"; Scaffold002 rebuild exon 8411535 8412668 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.1"; Scaffold002 rebuild exon 8412756 8413478 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.1"; Scaffold002 rebuild exon 8413566 8414608 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.1"; Scaffold002 rebuild transcript 8409427 8414608 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.2"; gene_name "PRK08026"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "flagellin; Validated"; similar_genes "(1,2)MUC1_XENLA(e-value:1.3e-19;bit-score:94.0)(3)MUC1_XENLA(e-value:3.3e-20;bit-score:96.0)"; Scaffold002 rebuild exon 8409427 8410375 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.2"; Scaffold002 rebuild exon 8411406 8411471 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.2"; Scaffold002 rebuild exon 8411535 8412668 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.2"; Scaffold002 rebuild exon 8412756 8413478 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.2"; Scaffold002 rebuild exon 8413566 8414608 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.2"; Scaffold002 rebuild transcript 8409442 8414608 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.3"; gene_name "PRK08026"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "flagellin; Validated"; similar_genes "(1,2)MUC1_XENLA(e-value:1.3e-19;bit-score:94.0)(3)MUC1_XENLA(e-value:3.3e-20;bit-score:96.0)"; Scaffold002 rebuild exon 8409442 8410375 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.3"; Scaffold002 rebuild exon 8411406 8411471 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.3"; Scaffold002 rebuild exon 8411535 8412668 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.3"; Scaffold002 rebuild exon 8412756 8413478 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.3"; Scaffold002 rebuild exon 8413566 8414608 . + . gene_id "RvY_06202"; transcript_id "RvY_06202.3"; Scaffold002 rebuild transcript 8415898 8418473 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; gene_name "PDK"; annotation "pyruvate dehydrogenase kinase [EC:2.7.11.2]"; Pfam "[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[BCDHK_Adom3] Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase"; EC "EC2.7.11.2"; KO "K00898"; similar_genes "PDK_DROME(e-value:1.7e-19;bit-score:94.0)"; Scaffold002 rebuild exon 8415898 8416029 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8416090 8416121 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8416177 8416258 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8416362 8416439 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8416516 8416560 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8416648 8416761 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8416825 8416979 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8417184 8417270 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8417349 8417487 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8417553 8417616 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8417682 8417839 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild exon 8418093 8418473 . - . gene_id "RvY_06203"; transcript_id "RvY_06203.1"; Scaffold002 rebuild transcript 8419162 8421231 . - . gene_id "RvY_06204"; transcript_id "RvY_06204.1"; gene_name "tRNA_m1G_MT"; annotation "hypothetical protein."; Pfam "[tRNA_m1G_MT] tRNA (Guanine-1)-methyltransferase"; CDD "tRNA (Guanine-1)-methyltransferase. This is a family of tRNA (Guanine-1)-methyltransferases EC:2.1.1.31. In E.coli K12 this enzyme catalyses the conversion of a guanosine residue to N1-methylguanine in position 37, next to the anticodon, in tRNA."; Scaffold002 rebuild exon 8419162 8419435 . - . gene_id "RvY_06204"; transcript_id "RvY_06204.1"; Scaffold002 rebuild exon 8419630 8419928 . - . gene_id "RvY_06204"; transcript_id "RvY_06204.1"; Scaffold002 rebuild exon 8420203 8420583 . - . gene_id "RvY_06204"; transcript_id "RvY_06204.1"; Scaffold002 rebuild exon 8420821 8421231 . - . gene_id "RvY_06204"; transcript_id "RvY_06204.1"; Scaffold002 rebuild transcript 8422080 8423490 . + . gene_id "RvY_06205"; transcript_id "RvY_06205.1"; gene_name "PRKAB"; annotation "putative 5'-AMP-activated protein kinase subunit beta-1"; Pfam "[AMPKBI] 5'-AMP-activated protein kinase beta subunit, interation domain"; KO "K07199"; similar_genes "AAKB1_MOUSE(e-value:4.8e-34;bit-score:142.0)"; Scaffold002 rebuild exon 8422080 8422472 . + . gene_id "RvY_06205"; transcript_id "RvY_06205.1"; Scaffold002 rebuild exon 8422672 8422893 . + . gene_id "RvY_06205"; transcript_id "RvY_06205.1"; Scaffold002 rebuild exon 8423149 8423490 . + . gene_id "RvY_06205"; transcript_id "RvY_06205.1"; Scaffold002 rebuild transcript 8423767 8425745 . - . gene_id "RvY_06206"; transcript_id "RvY_06206.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8423767 8424401 . - . gene_id "RvY_06206"; transcript_id "RvY_06206.1"; Scaffold002 rebuild exon 8425328 8425461 . - . gene_id "RvY_06206"; transcript_id "RvY_06206.1"; Scaffold002 rebuild exon 8425522 8425745 . - . gene_id "RvY_06206"; transcript_id "RvY_06206.1"; Scaffold002 rebuild transcript 8428839 8430811 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.1"; gene_name "(1)ODC1"; annotation "(1)putative Ornithine decarboxylase(2)hypothetical protein."; Pfam "[Orn_DAP_Arg_deC] Pyridoxal-dependent decarboxylase, C-terminal sheet domain|[Orn_Arg_deC_N] Pyridoxal-dependent decarboxylase, pyridoxal binding domain"; CDD "(1)Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with Scaffold002 rebuild exon 8428839 8429375 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.1"; Scaffold002 rebuild exon 8429450 8429599 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.1"; Scaffold002 rebuild exon 8429770 8430320 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.1"; Scaffold002 rebuild exon 8430553 8430811 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.1"; Scaffold002 rebuild transcript 8428720 8429552 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.2"; gene_name "(1)ODC1"; annotation "(1)putative Ornithine decarboxylase(2)hypothetical protein."; Pfam "[Orn_DAP_Arg_deC] Pyridoxal-dependent decarboxylase, C-terminal sheet domain|[Orn_Arg_deC_N] Pyridoxal-dependent decarboxylase, pyridoxal binding domain"; CDD "(1)Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with Scaffold002 rebuild exon 8428720 8429375 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.2"; Scaffold002 rebuild exon 8429450 8429552 . - . gene_id "RvY_06207"; transcript_id "RvY_06207.2"; Scaffold002 rebuild transcript 8431440 8431802 . - . gene_id "RvY_06208"; transcript_id "RvY_06208.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8431440 8431802 . - . gene_id "RvY_06208"; transcript_id "RvY_06208.1"; Scaffold002 rebuild transcript 8431724 8433478 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.1"; gene_name "(1)NNMT"; annotation "(1)nicotinamide N-methyltransferase [EC:2.1.1.1](2)hypothetical protein."; Pfam "[NNMT_PNMT_TEMT] NNMT/PNMT/TEMT family|(1)[Methyltransf_23] Methyltransferase domain"; EC "(1)EC2.1.1.1"; KO "(1)K00541"; Scaffold002 rebuild exon 8431724 8432140 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.1"; Scaffold002 rebuild exon 8432208 8432264 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.1"; Scaffold002 rebuild exon 8433020 8433478 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.1"; Scaffold002 rebuild transcript 8431724 8433059 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.2"; gene_name "(1)NNMT"; annotation "(1)nicotinamide N-methyltransferase [EC:2.1.1.1](2)hypothetical protein."; Pfam "[NNMT_PNMT_TEMT] NNMT/PNMT/TEMT family|(1)[Methyltransf_23] Methyltransferase domain"; EC "(1)EC2.1.1.1"; KO "(1)K00541"; Scaffold002 rebuild exon 8431724 8432140 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.2"; Scaffold002 rebuild exon 8432208 8432264 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.2"; Scaffold002 rebuild exon 8433027 8433059 . + . gene_id "RvY_06209"; transcript_id "RvY_06209.2"; Scaffold002 rebuild transcript 8435804 8436852 . + . gene_id "RvY_06210"; transcript_id "RvY_06210.1"; annotation "hypothetical protein."; Pfam "[Ferritin_2] Ferritin-like domain"; Scaffold002 rebuild exon 8435804 8435903 . + . gene_id "RvY_06210"; transcript_id "RvY_06210.1"; Scaffold002 rebuild exon 8436002 8436852 . + . gene_id "RvY_06210"; transcript_id "RvY_06210.1"; Scaffold002 rebuild transcript 8437202 8442037 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8437202 8437564 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8437908 8438252 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8438620 8439055 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8439409 8439626 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8439705 8439845 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8440222 8440728 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8440786 8441433 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild exon 8441798 8442037 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.1"; Scaffold002 rebuild transcript 8437202 8442037 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8437202 8437564 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8437908 8438252 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8438620 8439055 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8439409 8439626 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8439705 8439845 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8440222 8440728 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8440786 8441430 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild exon 8441798 8442037 . - . gene_id "RvY_06211"; transcript_id "RvY_06211.2"; Scaffold002 rebuild transcript 8443128 8445316 . + . gene_id "RvY_06212"; transcript_id "RvY_06212.1"; gene_name "TOE1"; annotation "target of EGR1 protein 1"; Pfam "[CAF1] CAF1 family ribonuclease"; KO "K13202"; Scaffold002 rebuild exon 8443128 8443244 . + . gene_id "RvY_06212"; transcript_id "RvY_06212.1"; Scaffold002 rebuild exon 8443317 8443634 . + . gene_id "RvY_06212"; transcript_id "RvY_06212.1"; Scaffold002 rebuild exon 8443846 8443943 . + . gene_id "RvY_06212"; transcript_id "RvY_06212.1"; Scaffold002 rebuild exon 8444005 8444482 . + . gene_id "RvY_06212"; transcript_id "RvY_06212.1"; Scaffold002 rebuild exon 8444834 8445316 . + . gene_id "RvY_06212"; transcript_id "RvY_06212.1"; Scaffold002 rebuild transcript 8445577 8446627 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; gene_name "RPB5"; annotation "DNA-directed RNA polymerases I, II, and III subunit RPABC1"; Pfam "[RNA_pol_Rpb5_C] RNA polymerase Rpb5, C-terminal domain|[RNA_pol_Rpb5_N] RNA polymerase Rpb5, N-terminal domain"; CDD "DNA-directed RNA polymerase; Provisional"; KO "K03013"; similar_genes "RPAB1_CAEEL(e-value:5.2e-63;bit-score:238.0)"; Scaffold002 rebuild exon 8445577 8445642 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; Scaffold002 rebuild exon 8445717 8445854 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; Scaffold002 rebuild exon 8445925 8446005 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; Scaffold002 rebuild exon 8446066 8446205 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; Scaffold002 rebuild exon 8446318 8446471 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; Scaffold002 rebuild exon 8446565 8446627 . - . gene_id "RvY_06213"; transcript_id "RvY_06213.1"; Scaffold002 rebuild transcript 8447192 8449310 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; gene_name "PTZ00135"; annotation "60S acidic ribosomal protein P0"; Pfam "[Ribosomal_60s] 60s Acidic ribosomal protein|[Ribosomal_L10] Ribosomal protein L10"; CDD "ribosomal phosphoprotein P0; Provisional"; similar_genes "RLA0_RANSY(e-value:3.7e-87;bit-score:319.0)"; Scaffold002 rebuild exon 8447192 8447304 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; Scaffold002 rebuild exon 8447527 8447614 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; Scaffold002 rebuild exon 8448211 8448357 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; Scaffold002 rebuild exon 8448503 8448688 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; Scaffold002 rebuild exon 8448917 8449057 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; Scaffold002 rebuild exon 8449125 8449310 . + . gene_id "RvY_06214"; transcript_id "RvY_06214.1"; Scaffold002 rebuild transcript 8450192 8451729 . + . gene_id "RvY_06215"; transcript_id "RvY_06215.1"; annotation "hypothetical protein."; Pfam "[TRIC] TRIC channel"; Scaffold002 rebuild exon 8450192 8450312 . + . gene_id "RvY_06215"; transcript_id "RvY_06215.1"; Scaffold002 rebuild exon 8450385 8450541 . + . gene_id "RvY_06215"; transcript_id "RvY_06215.1"; Scaffold002 rebuild exon 8450687 8450959 . + . gene_id "RvY_06215"; transcript_id "RvY_06215.1"; Scaffold002 rebuild exon 8451225 8451408 . + . gene_id "RvY_06215"; transcript_id "RvY_06215.1"; Scaffold002 rebuild exon 8451604 8451729 . + . gene_id "RvY_06215"; transcript_id "RvY_06215.1"; Scaffold002 rebuild transcript 8452440 8453235 . + . gene_id "RvY_06216"; transcript_id "RvY_06216.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8452440 8452481 . + . gene_id "RvY_06216"; transcript_id "RvY_06216.1"; Scaffold002 rebuild exon 8452597 8452733 . + . gene_id "RvY_06216"; transcript_id "RvY_06216.1"; Scaffold002 rebuild exon 8452816 8453081 . + . gene_id "RvY_06216"; transcript_id "RvY_06216.1"; Scaffold002 rebuild exon 8453168 8453235 . + . gene_id "RvY_06216"; transcript_id "RvY_06216.1"; Scaffold002 rebuild transcript 8454294 8454997 . + . gene_id "RvY_06217"; transcript_id "RvY_06217.1"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain"; Scaffold002 rebuild exon 8454294 8454323 . + . gene_id "RvY_06217"; transcript_id "RvY_06217.1"; Scaffold002 rebuild exon 8454512 8454833 . + . gene_id "RvY_06217"; transcript_id "RvY_06217.1"; Scaffold002 rebuild exon 8454921 8454997 . + . gene_id "RvY_06217"; transcript_id "RvY_06217.1"; Scaffold002 rebuild transcript 8455823 8456470 . + . gene_id "RvY_06218"; transcript_id "RvY_06218.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8455823 8455876 . + . gene_id "RvY_06218"; transcript_id "RvY_06218.1"; Scaffold002 rebuild exon 8456031 8456340 . + . gene_id "RvY_06218"; transcript_id "RvY_06218.1"; Scaffold002 rebuild exon 8456409 8456470 . + . gene_id "RvY_06218"; transcript_id "RvY_06218.1"; Scaffold002 rebuild transcript 8456775 8458310 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8456775 8457146 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; Scaffold002 rebuild exon 8457372 8457616 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; Scaffold002 rebuild exon 8457671 8457830 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; Scaffold002 rebuild exon 8457921 8457949 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; Scaffold002 rebuild exon 8458054 8458156 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; Scaffold002 rebuild exon 8458215 8458310 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.1"; Scaffold002 rebuild transcript 8456775 8458240 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8456775 8457146 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; Scaffold002 rebuild exon 8457372 8457616 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; Scaffold002 rebuild exon 8457671 8457830 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; Scaffold002 rebuild exon 8457921 8457949 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; Scaffold002 rebuild exon 8458054 8458156 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; Scaffold002 rebuild exon 8458214 8458240 . - . gene_id "RvY_06219"; transcript_id "RvY_06219.2"; Scaffold002 rebuild transcript 8458453 8458771 . + . gene_id "RvY_06220"; transcript_id "RvY_06220.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8458453 8458543 . + . gene_id "RvY_06220"; transcript_id "RvY_06220.1"; Scaffold002 rebuild exon 8458716 8458771 . + . gene_id "RvY_06220"; transcript_id "RvY_06220.1"; Scaffold002 rebuild transcript 8458856 8462719 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold002 rebuild exon 8458856 8459370 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild exon 8459614 8459947 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild exon 8460203 8460433 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild exon 8460728 8461066 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild exon 8461158 8461630 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild exon 8462248 8462304 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild exon 8462371 8462719 . - . gene_id "RvY_06221"; transcript_id "RvY_06221.1"; Scaffold002 rebuild transcript 8463196 8464642 . - . gene_id "RvY_06222"; transcript_id "RvY_06222.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8463196 8463460 . - . gene_id "RvY_06222"; transcript_id "RvY_06222.1"; Scaffold002 rebuild exon 8464632 8464642 . - . gene_id "RvY_06222"; transcript_id "RvY_06222.1"; Scaffold002 rebuild transcript 8463938 8464979 . + . gene_id "RvY_06223"; transcript_id "RvY_06223.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8463938 8464095 . + . gene_id "RvY_06223"; transcript_id "RvY_06223.1"; Scaffold002 rebuild exon 8464799 8464979 . + . gene_id "RvY_06223"; transcript_id "RvY_06223.1"; Scaffold002 rebuild transcript 8468113 8468337 . - . gene_id "RvY_06224"; transcript_id "RvY_06224.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8468113 8468337 . - . gene_id "RvY_06224"; transcript_id "RvY_06224.1"; Scaffold002 rebuild transcript 8469957 8470286 . + . gene_id "RvY_06225"; transcript_id "RvY_06225.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8469957 8470034 . + . gene_id "RvY_06225"; transcript_id "RvY_06225.1"; Scaffold002 rebuild exon 8470119 8470286 . + . gene_id "RvY_06225"; transcript_id "RvY_06225.1"; Scaffold002 rebuild transcript 8470568 8472807 . + . gene_id "RvY_06226"; transcript_id "RvY_06226.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 8470568 8470852 . + . gene_id "RvY_06226"; transcript_id "RvY_06226.1"; Scaffold002 rebuild exon 8471018 8471345 . + . gene_id "RvY_06226"; transcript_id "RvY_06226.1"; Scaffold002 rebuild exon 8471444 8471702 . + . gene_id "RvY_06226"; transcript_id "RvY_06226.1"; Scaffold002 rebuild exon 8471910 8472214 . + . gene_id "RvY_06226"; transcript_id "RvY_06226.1"; Scaffold002 rebuild exon 8472737 8472807 . + . gene_id "RvY_06226"; transcript_id "RvY_06226.1"; Scaffold002 rebuild transcript 8477550 8481957 . + . gene_id "RvY_06227"; transcript_id "RvY_06227.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8477550 8477741 . + . gene_id "RvY_06227"; transcript_id "RvY_06227.1"; Scaffold002 rebuild exon 8477823 8477966 . + . gene_id "RvY_06227"; transcript_id "RvY_06227.1"; Scaffold002 rebuild exon 8478099 8478209 . + . gene_id "RvY_06227"; transcript_id "RvY_06227.1"; Scaffold002 rebuild exon 8481745 8481813 . + . gene_id "RvY_06227"; transcript_id "RvY_06227.1"; Scaffold002 rebuild exon 8481898 8481957 . + . gene_id "RvY_06227"; transcript_id "RvY_06227.1"; Scaffold002 rebuild transcript 8478782 8478943 . - . gene_id "RvY_06228"; transcript_id "RvY_06228.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8478782 8478943 . - . gene_id "RvY_06228"; transcript_id "RvY_06228.1"; Scaffold002 rebuild transcript 8485971 8486357 . - . gene_id "RvY_06229"; transcript_id "RvY_06229.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8485971 8486357 . - . gene_id "RvY_06229"; transcript_id "RvY_06229.1"; Scaffold002 rebuild transcript 8490638 8491949 . + . gene_id "RvY_06230"; transcript_id "RvY_06230.1"; gene_name "PTZ00146"; annotation "putative Glycine-rich cell wall structural protein 1"; CDD "fibrillarin; Provisional"; similar_genes "GRP1_PETHY(e-value:7.7e-26;bit-score:115.0)"; Scaffold002 rebuild exon 8490638 8491124 . + . gene_id "RvY_06230"; transcript_id "RvY_06230.1"; Scaffold002 rebuild exon 8491261 8491949 . + . gene_id "RvY_06230"; transcript_id "RvY_06230.1"; Scaffold002 rebuild transcript 8492236 8493128 . - . gene_id "RvY_06231"; transcript_id "RvY_06231.1"; gene_name "CHMP1"; annotation "Charged multivesicular body protein 1b"; Pfam "[Snf7]"; KO "K12197"; similar_genes "CHM1B_CHICK(e-value:1.1e-65;bit-score:247.0)"; Scaffold002 rebuild exon 8492236 8492567 . - . gene_id "RvY_06231"; transcript_id "RvY_06231.1"; Scaffold002 rebuild exon 8492843 8493128 . - . gene_id "RvY_06231"; transcript_id "RvY_06231.1"; Scaffold002 rebuild transcript 8495594 8496085 . + . gene_id "RvY_06232"; transcript_id "RvY_06232.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8495594 8496085 . + . gene_id "RvY_06232"; transcript_id "RvY_06232.1"; Scaffold002 rebuild transcript 8496196 8498292 . - . gene_id "RvY_06233"; transcript_id "RvY_06233.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8496196 8496510 . - . gene_id "RvY_06233"; transcript_id "RvY_06233.1"; Scaffold002 rebuild exon 8497446 8497509 . - . gene_id "RvY_06233"; transcript_id "RvY_06233.1"; Scaffold002 rebuild exon 8498147 8498292 . - . gene_id "RvY_06233"; transcript_id "RvY_06233.1"; Scaffold002 rebuild transcript 8498403 8499137 . - . gene_id "RvY_06234"; transcript_id "RvY_06234.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8498403 8498458 . - . gene_id "RvY_06234"; transcript_id "RvY_06234.1"; Scaffold002 rebuild exon 8498619 8498922 . - . gene_id "RvY_06234"; transcript_id "RvY_06234.1"; Scaffold002 rebuild exon 8498988 8499137 . - . gene_id "RvY_06234"; transcript_id "RvY_06234.1"; Scaffold002 rebuild transcript 8500265 8500663 . - . gene_id "RvY_06235"; transcript_id "RvY_06235.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8500265 8500663 . - . gene_id "RvY_06235"; transcript_id "RvY_06235.1"; Scaffold002 rebuild transcript 8502865 8503230 . + . gene_id "RvY_06236"; transcript_id "RvY_06236.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8502865 8503230 . + . gene_id "RvY_06236"; transcript_id "RvY_06236.1"; Scaffold002 rebuild transcript 8503345 8503629 . - . gene_id "RvY_06237"; transcript_id "RvY_06237.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8503345 8503629 . - . gene_id "RvY_06237"; transcript_id "RvY_06237.1"; Scaffold002 rebuild transcript 8504280 8504621 . + . gene_id "RvY_06238"; transcript_id "RvY_06238.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8504280 8504621 . + . gene_id "RvY_06238"; transcript_id "RvY_06238.1"; Scaffold002 rebuild transcript 8505097 8505450 . + . gene_id "RvY_06239"; transcript_id "RvY_06239.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8505097 8505450 . + . gene_id "RvY_06239"; transcript_id "RvY_06239.1"; Scaffold002 rebuild transcript 8505544 8505822 . + . gene_id "RvY_06240"; transcript_id "RvY_06240.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8505544 8505822 . + . gene_id "RvY_06240"; transcript_id "RvY_06240.1"; Scaffold002 rebuild transcript 8506401 8506574 . + . gene_id "RvY_06241"; transcript_id "RvY_06241.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8506401 8506574 . + . gene_id "RvY_06241"; transcript_id "RvY_06241.1"; Scaffold002 rebuild transcript 8506594 8507031 . + . gene_id "RvY_06242"; transcript_id "RvY_06242.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8506594 8507031 . + . gene_id "RvY_06242"; transcript_id "RvY_06242.1"; Scaffold002 rebuild transcript 8507880 8511169 . + . gene_id "RvY_06243"; transcript_id "RvY_06243.1"; gene_name "VARS"; annotation "Valyl-tRNA synthetase, mitochondrial"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[Anticodon_1] Anticodon-binding domain of tRNA|[tRNA-synt_1_2] Leucyl-tRNA synthetase, Domain 2|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)"; CDD "valyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.9"; KO "K01873"; similar_genes "SYVM_HUMAN(e-value:1.6e-51;bit-score:200.0)"; Scaffold002 rebuild exon 8507880 8508360 . + . gene_id "RvY_06243"; transcript_id "RvY_06243.1"; Scaffold002 rebuild exon 8508515 8508896 . + . gene_id "RvY_06243"; transcript_id "RvY_06243.1"; Scaffold002 rebuild exon 8508970 8511169 . + . gene_id "RvY_06243"; transcript_id "RvY_06243.1"; Scaffold002 rebuild transcript 8511371 8512727 . - . gene_id "RvY_06244"; transcript_id "RvY_06244.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8511371 8511772 . - . gene_id "RvY_06244"; transcript_id "RvY_06244.1"; Scaffold002 rebuild exon 8512059 8512091 . - . gene_id "RvY_06244"; transcript_id "RvY_06244.1"; Scaffold002 rebuild exon 8512311 8512727 . - . gene_id "RvY_06244"; transcript_id "RvY_06244.1"; Scaffold002 rebuild transcript 8513461 8514492 . - . gene_id "RvY_06245"; transcript_id "RvY_06245.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8513461 8513702 . - . gene_id "RvY_06245"; transcript_id "RvY_06245.1"; Scaffold002 rebuild exon 8513783 8513957 . - . gene_id "RvY_06245"; transcript_id "RvY_06245.1"; Scaffold002 rebuild exon 8514248 8514303 . - . gene_id "RvY_06245"; transcript_id "RvY_06245.1"; Scaffold002 rebuild exon 8514417 8514492 . - . gene_id "RvY_06245"; transcript_id "RvY_06245.1"; Scaffold002 rebuild transcript 8514440 8515406 . + . gene_id "RvY_06246"; transcript_id "RvY_06246.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8514440 8514544 . + . gene_id "RvY_06246"; transcript_id "RvY_06246.1"; Scaffold002 rebuild exon 8515206 8515406 . + . gene_id "RvY_06246"; transcript_id "RvY_06246.1"; Scaffold002 rebuild transcript 8515600 8516809 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8515600 8515651 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.1"; Scaffold002 rebuild exon 8515735 8516284 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.1"; Scaffold002 rebuild exon 8516374 8516428 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.1"; Scaffold002 rebuild exon 8516513 8516809 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.1"; Scaffold002 rebuild transcript 8515600 8516809 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8515600 8515651 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.2"; Scaffold002 rebuild exon 8515735 8516284 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.2"; Scaffold002 rebuild exon 8516374 8516428 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.2"; Scaffold002 rebuild exon 8516513 8516600 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.2"; Scaffold002 rebuild exon 8516685 8516809 . - . gene_id "RvY_06247"; transcript_id "RvY_06247.2"; Scaffold002 rebuild transcript 8517996 8520714 . + . gene_id "RvY_06248"; transcript_id "RvY_06248.1"; gene_name "GALNT"; annotation "Polypeptide N-acetylgalactosaminyltransferase 13"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; KO "K00710"; similar_genes "GLT13_RAT(e-value:5.0e-93;bit-score:338.0)"; Scaffold002 rebuild exon 8517996 8518179 . + . gene_id "RvY_06248"; transcript_id "RvY_06248.1"; Scaffold002 rebuild exon 8518248 8518376 . + . gene_id "RvY_06248"; transcript_id "RvY_06248.1"; Scaffold002 rebuild exon 8518699 8519169 . + . gene_id "RvY_06248"; transcript_id "RvY_06248.1"; Scaffold002 rebuild exon 8519233 8519979 . + . gene_id "RvY_06248"; transcript_id "RvY_06248.1"; Scaffold002 rebuild exon 8520386 8520714 . + . gene_id "RvY_06248"; transcript_id "RvY_06248.1"; Scaffold002 rebuild transcript 8521286 8522392 . + . gene_id "RvY_06249"; transcript_id "RvY_06249.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold002 rebuild exon 8521286 8521697 . + . gene_id "RvY_06249"; transcript_id "RvY_06249.1"; Scaffold002 rebuild exon 8521806 8521986 . + . gene_id "RvY_06249"; transcript_id "RvY_06249.1"; Scaffold002 rebuild exon 8522107 8522146 . + . gene_id "RvY_06249"; transcript_id "RvY_06249.1"; Scaffold002 rebuild exon 8522222 8522392 . + . gene_id "RvY_06249"; transcript_id "RvY_06249.1"; Scaffold002 rebuild transcript 8523224 8523496 . + . gene_id "RvY_06250"; transcript_id "RvY_06250.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8523224 8523496 . + . gene_id "RvY_06250"; transcript_id "RvY_06250.1"; Scaffold002 rebuild transcript 8524048 8525084 . + . gene_id "RvY_06251"; transcript_id "RvY_06251.1"; gene_name "COG1878"; annotation "hypothetical protein."; Pfam "[Cyclase] Putative cyclase"; CDD "Kynurenine formamidase [Amino acid transport and metabolism]"; Scaffold002 rebuild exon 8524048 8524361 . + . gene_id "RvY_06251"; transcript_id "RvY_06251.1"; Scaffold002 rebuild exon 8524559 8525084 . + . gene_id "RvY_06251"; transcript_id "RvY_06251.1"; Scaffold002 rebuild transcript 8527655 8536806 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; gene_name "MRP_assoc_pro"; annotation "Multidrug resistance-associated protein 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "MRP1_CHICK(e-value:7.9e-64;bit-score:241.0)"; Scaffold002 rebuild exon 8527655 8527684 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8527748 8527924 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8528013 8528144 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8528243 8528386 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8528457 8528579 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8528769 8528830 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8528906 8529034 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8529103 8529402 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8529485 8529662 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8529735 8529865 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8529932 8530055 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8530128 8530259 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8530389 8530607 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8530670 8531131 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8531878 8531964 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8532102 8532145 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8532204 8532258 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8532446 8532847 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8532903 8533089 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8533155 8533556 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8533620 8533728 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8533786 8533924 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8534011 8534153 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8534217 8534322 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8535320 8535478 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8535540 8535706 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8536353 8536467 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8536543 8536622 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild exon 8536695 8536806 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.1"; Scaffold002 rebuild transcript 8528046 8536806 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; gene_name "MRP_assoc_pro"; annotation "Multidrug resistance-associated protein 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "MRP1_CHICK(e-value:7.9e-64;bit-score:241.0)"; Scaffold002 rebuild exon 8528046 8528144 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8528243 8528386 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8528457 8528579 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8528769 8528830 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8528906 8529034 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8529103 8529402 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8529485 8529662 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8529735 8529865 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8529932 8530055 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8530128 8530259 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8530389 8530607 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8530670 8531131 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8531878 8531964 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8532102 8532145 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8532204 8532258 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8532446 8532847 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8532903 8533089 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8533155 8533556 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8533620 8533728 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8533786 8533924 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8534011 8534153 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8534217 8534322 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8535320 8535478 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8535540 8535706 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8536353 8536467 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8536543 8536622 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild exon 8536695 8536806 . + . gene_id "RvY_06252"; transcript_id "RvY_06252.2"; Scaffold002 rebuild transcript 8536411 8536593 . - . gene_id "RvY_06253"; transcript_id "RvY_06253.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8536411 8536593 . - . gene_id "RvY_06253"; transcript_id "RvY_06253.1"; Scaffold002 rebuild transcript 8538243 8539779 . + . gene_id "RvY_06254"; transcript_id "RvY_06254.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8538243 8538321 . + . gene_id "RvY_06254"; transcript_id "RvY_06254.2"; Scaffold002 rebuild exon 8539273 8539463 . + . gene_id "RvY_06254"; transcript_id "RvY_06254.2"; Scaffold002 rebuild exon 8539534 8539650 . + . gene_id "RvY_06254"; transcript_id "RvY_06254.2"; Scaffold002 rebuild exon 8539726 8539779 . + . gene_id "RvY_06254"; transcript_id "RvY_06254.2"; Scaffold002 rebuild transcript 8542264 8542554 . - . gene_id "RvY_06255"; transcript_id "RvY_06255.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8542264 8542554 . - . gene_id "RvY_06255"; transcript_id "RvY_06255.3"; Scaffold002 rebuild transcript 8543307 8543857 . - . gene_id "RvY_06256"; transcript_id "RvY_06256.1"; annotation "hypothetical protein."; similar_genes "GRP1_PETHY(e-value:1.2e-17;bit-score:88.0)"; Scaffold002 rebuild exon 8543307 8543753 . - . gene_id "RvY_06256"; transcript_id "RvY_06256.1"; Scaffold002 rebuild exon 8543843 8543857 . - . gene_id "RvY_06256"; transcript_id "RvY_06256.1"; Scaffold002 rebuild transcript 8544539 8544715 . + . gene_id "RvY_06257"; transcript_id "RvY_06257.1"; annotation "hypothetical protein."; Pfam "[Ferritin_2] Ferritin-like domain"; Scaffold002 rebuild exon 8544539 8544715 . + . gene_id "RvY_06257"; transcript_id "RvY_06257.1"; Scaffold002 rebuild transcript 8546340 8547666 . + . gene_id "RvY_06258"; transcript_id "RvY_06258.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8546340 8546756 . + . gene_id "RvY_06258"; transcript_id "RvY_06258.1"; Scaffold002 rebuild exon 8547025 8547666 . + . gene_id "RvY_06258"; transcript_id "RvY_06258.1"; Scaffold002 rebuild transcript 8548952 8551057 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; gene_name "(1)CYP2C"; annotation "(1)cytochrome P450, family 2, subfamily C [EC:1.14.14.1](2,3)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "(1)K07413"; similar_genes "CP2AD_HUMAN(e-value:1.0e-06;bit-score:51.0)"; Scaffold002 rebuild exon 8548952 8549294 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild exon 8549370 8549441 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild exon 8549535 8549651 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild exon 8549744 8550118 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild exon 8550327 8550734 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild exon 8550803 8550928 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild exon 8551011 8551057 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.1"; Scaffold002 rebuild transcript 8549731 8551032 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.2"; gene_name "(1)CYP2C"; annotation "(1)cytochrome P450, family 2, subfamily C [EC:1.14.14.1](2,3)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "(1)K07413"; similar_genes "CP2AD_HUMAN(e-value:1.0e-06;bit-score:51.0)"; Scaffold002 rebuild exon 8549731 8550118 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.2"; Scaffold002 rebuild exon 8550327 8550734 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.2"; Scaffold002 rebuild exon 8550803 8551032 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.2"; Scaffold002 rebuild transcript 8549764 8551032 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.3"; gene_name "(1)CYP2C"; annotation "(1)cytochrome P450, family 2, subfamily C [EC:1.14.14.1](2,3)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "(1)K07413"; similar_genes "CP2AD_HUMAN(e-value:1.0e-06;bit-score:51.0)"; Scaffold002 rebuild exon 8549764 8550118 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.3"; Scaffold002 rebuild exon 8550327 8550734 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.3"; Scaffold002 rebuild exon 8550803 8551032 . + . gene_id "RvY_06259"; transcript_id "RvY_06259.3"; Scaffold002 rebuild transcript 8552621 8553085 . - . gene_id "RvY_06260"; transcript_id "RvY_06260.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8552621 8553085 . - . gene_id "RvY_06260"; transcript_id "RvY_06260.1"; Scaffold002 rebuild transcript 8552642 8553022 . + . gene_id "RvY_06261"; transcript_id "RvY_06261.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8552642 8553022 . + . gene_id "RvY_06261"; transcript_id "RvY_06261.1"; Scaffold002 rebuild transcript 8553437 8553897 . - . gene_id "RvY_06262"; transcript_id "RvY_06262.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8553437 8553598 . - . gene_id "RvY_06262"; transcript_id "RvY_06262.1"; Scaffold002 rebuild exon 8553668 8553747 . - . gene_id "RvY_06262"; transcript_id "RvY_06262.1"; Scaffold002 rebuild exon 8553825 8553897 . - . gene_id "RvY_06262"; transcript_id "RvY_06262.1"; Scaffold002 rebuild transcript 8553911 8554237 . + . gene_id "RvY_06263"; transcript_id "RvY_06263.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8553911 8554237 . + . gene_id "RvY_06263"; transcript_id "RvY_06263.1"; Scaffold002 rebuild transcript 8555651 8561850 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; gene_name "RpsA"; annotation "hypothetical protein."; Pfam "[TPR_12] Tetratricopeptide repeat|[S1] S1 RNA binding domain|[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|[Suf] Suppressor of forked protein (Suf)"; CDD "Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]"; KO "K14792"; similar_genes "RRP5_MOUSE(e-value:1.5e-22;bit-score:104.0)"; Scaffold002 rebuild exon 8555651 8555813 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8555891 8556059 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8556167 8556320 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8556395 8556563 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8556850 8557034 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8557102 8557800 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8558019 8558552 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8558896 8559323 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8559579 8559873 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8559930 8560160 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8560467 8560537 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8560606 8561059 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8561277 8561450 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild exon 8561512 8561850 . - . gene_id "RvY_06264"; transcript_id "RvY_06264.1"; Scaffold002 rebuild transcript 8562417 8564651 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; EC "EC3.1.3.2"; KO "(1)K14395"; similar_genes "PPA6_HUMAN(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 8562417 8562710 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8562793 8562924 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8562978 8563011 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8563110 8563206 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8563278 8563360 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8563433 8563594 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8563668 8563741 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8563927 8564376 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild exon 8564583 8564651 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.1"; Scaffold002 rebuild transcript 8562417 8563686 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; EC "EC3.1.3.2"; KO "(1)K14395"; similar_genes "PPA6_HUMAN(e-value:1.1e-14;bit-score:78.0)"; Scaffold002 rebuild exon 8562417 8562710 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; Scaffold002 rebuild exon 8562793 8562924 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; Scaffold002 rebuild exon 8562978 8563011 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; Scaffold002 rebuild exon 8563110 8563206 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; Scaffold002 rebuild exon 8563278 8563360 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; Scaffold002 rebuild exon 8563433 8563686 . + . gene_id "RvY_06265"; transcript_id "RvY_06265.2"; Scaffold002 rebuild transcript 8565468 8565947 . + . gene_id "RvY_06266"; transcript_id "RvY_06266.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8565468 8565947 . + . gene_id "RvY_06266"; transcript_id "RvY_06266.1"; Scaffold002 rebuild transcript 8566764 8571884 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; gene_name "ANPEP"; annotation "putative Endoplasmic reticulum aminopeptidase 1"; Pfam "[DUF3358]|[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; EC "EC3.4.11.-|EC3.4.11.2"; KO "K11140"; similar_genes "ERAP1_HUMAN(e-value:1.1e-33;bit-score:141.0)"; Scaffold002 rebuild exon 8566764 8566995 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8567059 8567199 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8567281 8567448 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8567519 8567629 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8567716 8567795 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8567868 8568015 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8568088 8568277 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8568795 8569200 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8569274 8569408 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8569482 8569595 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8569680 8569834 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8570246 8570366 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8570446 8570563 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8570713 8570868 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8570933 8571470 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild exon 8571629 8571884 . - . gene_id "RvY_06267"; transcript_id "RvY_06267.1"; Scaffold002 rebuild transcript 8572399 8573134 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8572399 8572493 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.1"; Scaffold002 rebuild exon 8572563 8572760 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.1"; Scaffold002 rebuild exon 8572861 8573134 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.1"; Scaffold002 rebuild transcript 8572543 8573134 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8572543 8572760 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.2"; Scaffold002 rebuild exon 8572861 8573134 . - . gene_id "RvY_06268"; transcript_id "RvY_06268.2"; Scaffold002 rebuild transcript 8573097 8576779 . + . gene_id "RvY_06269"; transcript_id "RvY_06269.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8573097 8573160 . + . gene_id "RvY_06269"; transcript_id "RvY_06269.1"; Scaffold002 rebuild exon 8576029 8576219 . + . gene_id "RvY_06269"; transcript_id "RvY_06269.1"; Scaffold002 rebuild exon 8576456 8576779 . + . gene_id "RvY_06269"; transcript_id "RvY_06269.1"; Scaffold002 rebuild transcript 8578854 8579762 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.1"; annotation "hypothetical protein."; Pfam "(1,4)[Lig_chan] Ligand-gated ion channel|(2)[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|(2,3)[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; Scaffold002 rebuild exon 8578854 8579235 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.1"; Scaffold002 rebuild exon 8579311 8579762 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.1"; Scaffold002 rebuild transcript 8580053 8581465 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.2"; annotation "hypothetical protein."; Pfam "(1,4)[Lig_chan] Ligand-gated ion channel|(2)[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|(2,3)[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; Scaffold002 rebuild exon 8580053 8580214 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.2"; Scaffold002 rebuild exon 8580285 8580540 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.2"; Scaffold002 rebuild exon 8581174 8581298 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.2"; Scaffold002 rebuild exon 8581370 8581465 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.2"; Scaffold002 rebuild transcript 8579641 8580467 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.3"; annotation "hypothetical protein."; Pfam "(1,4)[Lig_chan] Ligand-gated ion channel|(2)[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|(2,3)[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; Scaffold002 rebuild exon 8579641 8579803 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.3"; Scaffold002 rebuild exon 8580058 8580467 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.3"; Scaffold002 rebuild transcript 8579307 8579762 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.4"; annotation "hypothetical protein."; Pfam "(1,4)[Lig_chan] Ligand-gated ion channel|(2)[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|(2,3)[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; Scaffold002 rebuild exon 8579307 8579762 . - . gene_id "RvY_06270"; transcript_id "RvY_06270.4"; Scaffold002 rebuild transcript 8587670 8589059 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8587670 8587819 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8587895 8587976 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8588042 8588063 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8588122 8588172 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8588246 8588293 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8588346 8588428 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8588506 8588774 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild exon 8588847 8589059 . + . gene_id "RvY_06271"; transcript_id "RvY_06271.1"; Scaffold002 rebuild transcript 8590023 8591741 . - . gene_id "RvY_06272"; transcript_id "RvY_06272.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold002 rebuild exon 8590023 8591275 . - . gene_id "RvY_06272"; transcript_id "RvY_06272.1"; Scaffold002 rebuild exon 8591489 8591741 . - . gene_id "RvY_06272"; transcript_id "RvY_06272.1"; Scaffold002 rebuild transcript 8592374 8593596 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 8592374 8592938 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.1"; Scaffold002 rebuild exon 8593021 8593116 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.1"; Scaffold002 rebuild exon 8593192 8593250 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.1"; Scaffold002 rebuild exon 8593363 8593596 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.1"; Scaffold002 rebuild transcript 8592040 8592937 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 8592040 8592273 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.2"; Scaffold002 rebuild exon 8592395 8592937 . - . gene_id "RvY_06273"; transcript_id "RvY_06273.2"; Scaffold002 rebuild transcript 8592468 8592689 . + . gene_id "RvY_06274"; transcript_id "RvY_06274.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8592468 8592689 . + . gene_id "RvY_06274"; transcript_id "RvY_06274.1"; Scaffold002 rebuild transcript 8596024 8597175 . - . gene_id "RvY_06275"; transcript_id "RvY_06275.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold002 rebuild exon 8596024 8596452 . - . gene_id "RvY_06275"; transcript_id "RvY_06275.1"; Scaffold002 rebuild exon 8596533 8596637 . - . gene_id "RvY_06275"; transcript_id "RvY_06275.1"; Scaffold002 rebuild exon 8596697 8596771 . - . gene_id "RvY_06275"; transcript_id "RvY_06275.1"; Scaffold002 rebuild exon 8596845 8597033 . - . gene_id "RvY_06275"; transcript_id "RvY_06275.1"; Scaffold002 rebuild exon 8597104 8597175 . - . gene_id "RvY_06275"; transcript_id "RvY_06275.1"; Scaffold002 rebuild transcript 8597744 8597947 . - . gene_id "RvY_06276"; transcript_id "RvY_06276.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8597744 8597947 . - . gene_id "RvY_06276"; transcript_id "RvY_06276.1"; Scaffold002 rebuild transcript 8599681 8599842 . + . gene_id "RvY_06277"; transcript_id "RvY_06277.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8599681 8599842 . + . gene_id "RvY_06277"; transcript_id "RvY_06277.1"; Scaffold002 rebuild transcript 8600369 8600620 . + . gene_id "RvY_06278"; transcript_id "RvY_06278.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8600369 8600620 . + . gene_id "RvY_06278"; transcript_id "RvY_06278.1"; Scaffold002 rebuild transcript 8601727 8601969 . + . gene_id "RvY_06279"; transcript_id "RvY_06279.1"; annotation "hypothetical protein."; Pfam "[Trefoil] Trefoil (P-type) domain"; Scaffold002 rebuild exon 8601727 8601969 . + . gene_id "RvY_06279"; transcript_id "RvY_06279.1"; Scaffold002 rebuild transcript 8602631 8602807 . - . gene_id "RvY_06280"; transcript_id "RvY_06280.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8602631 8602807 . - . gene_id "RvY_06280"; transcript_id "RvY_06280.1"; Scaffold002 rebuild transcript 8604329 8604675 . - . gene_id "RvY_06281"; transcript_id "RvY_06281.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8604329 8604458 . - . gene_id "RvY_06281"; transcript_id "RvY_06281.1"; Scaffold002 rebuild exon 8604572 8604675 . - . gene_id "RvY_06281"; transcript_id "RvY_06281.1"; Scaffold002 rebuild transcript 8605597 8605761 . + . gene_id "RvY_06282"; transcript_id "RvY_06282.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8605597 8605761 . + . gene_id "RvY_06282"; transcript_id "RvY_06282.1"; Scaffold002 rebuild transcript 8610378 8611473 . - . gene_id "RvY_06283"; transcript_id "RvY_06283.1"; gene_name "GST_N_Omega"; annotation "hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold002 rebuild exon 8610378 8610658 . - . gene_id "RvY_06283"; transcript_id "RvY_06283.1"; Scaffold002 rebuild exon 8610932 8611275 . - . gene_id "RvY_06283"; transcript_id "RvY_06283.1"; Scaffold002 rebuild exon 8611337 8611473 . - . gene_id "RvY_06283"; transcript_id "RvY_06283.1"; Scaffold002 rebuild transcript 8611942 8614194 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[Myosin_tail_1] Myosin tail"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold002 rebuild exon 8611942 8612103 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; Scaffold002 rebuild exon 8612176 8612382 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; Scaffold002 rebuild exon 8612515 8612775 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; Scaffold002 rebuild exon 8613628 8613808 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; Scaffold002 rebuild exon 8613889 8614031 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; Scaffold002 rebuild exon 8614090 8614194 . - . gene_id "RvY_06284"; transcript_id "RvY_06284.1"; Scaffold002 rebuild transcript 8615157 8615735 . + . gene_id "RvY_06285"; transcript_id "RvY_06285.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8615157 8615735 . + . gene_id "RvY_06285"; transcript_id "RvY_06285.1"; Scaffold002 rebuild transcript 8616056 8616797 . + . gene_id "RvY_06286"; transcript_id "RvY_06286.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8616056 8616348 . + . gene_id "RvY_06286"; transcript_id "RvY_06286.1"; Scaffold002 rebuild exon 8616692 8616797 . + . gene_id "RvY_06286"; transcript_id "RvY_06286.1"; Scaffold002 rebuild transcript 8616056 8616352 . + . gene_id "RvY_06286"; transcript_id "RvY_06286.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8616056 8616352 . + . gene_id "RvY_06286"; transcript_id "RvY_06286.2"; Scaffold002 rebuild transcript 8618426 8620371 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8618426 8618904 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.1"; Scaffold002 rebuild exon 8619617 8620187 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.1"; Scaffold002 rebuild exon 8620282 8620371 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.1"; Scaffold002 rebuild transcript 8618426 8620241 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8618426 8618904 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.2"; Scaffold002 rebuild exon 8619617 8620241 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.2"; Scaffold002 rebuild transcript 8618426 8620371 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8618426 8618904 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.3"; Scaffold002 rebuild exon 8619689 8620187 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.3"; Scaffold002 rebuild exon 8620282 8620371 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.3"; Scaffold002 rebuild transcript 8619627 8620371 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.4"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8619627 8620016 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.4"; Scaffold002 rebuild exon 8620071 8620187 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.4"; Scaffold002 rebuild exon 8620282 8620371 . + . gene_id "RvY_06287"; transcript_id "RvY_06287.4"; Scaffold002 rebuild transcript 8621067 8623723 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; gene_name "(1)BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|(2)[BACK] BTB And C-terminal Kelch"; CDD "(1)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold002 rebuild exon 8621067 8621376 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; Scaffold002 rebuild exon 8621606 8622274 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; Scaffold002 rebuild exon 8622380 8622529 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; Scaffold002 rebuild exon 8622591 8622696 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; Scaffold002 rebuild exon 8622787 8622895 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; Scaffold002 rebuild exon 8623226 8623723 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.1"; Scaffold002 rebuild transcript 8621067 8622379 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.2"; gene_name "(1)BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|(2)[BACK] BTB And C-terminal Kelch"; CDD "(1)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold002 rebuild exon 8621067 8621376 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.2"; Scaffold002 rebuild exon 8621606 8622274 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.2"; Scaffold002 rebuild exon 8622375 8622379 . + . gene_id "RvY_06288"; transcript_id "RvY_06288.2"; Scaffold002 rebuild transcript 8624082 8624587 . - . gene_id "RvY_06289"; transcript_id "RvY_06289.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8624082 8624165 . - . gene_id "RvY_06289"; transcript_id "RvY_06289.1"; Scaffold002 rebuild exon 8624252 8624587 . - . gene_id "RvY_06289"; transcript_id "RvY_06289.1"; Scaffold002 rebuild transcript 8627352 8628365 . + . gene_id "RvY_06290"; transcript_id "RvY_06290.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8627352 8628365 . + . gene_id "RvY_06290"; transcript_id "RvY_06290.1"; Scaffold002 rebuild transcript 8629191 8630141 . + . gene_id "RvY_06291"; transcript_id "RvY_06291.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold002 rebuild exon 8629191 8629224 . + . gene_id "RvY_06291"; transcript_id "RvY_06291.1"; Scaffold002 rebuild exon 8629316 8629424 . + . gene_id "RvY_06291"; transcript_id "RvY_06291.1"; Scaffold002 rebuild exon 8629492 8629838 . + . gene_id "RvY_06291"; transcript_id "RvY_06291.1"; Scaffold002 rebuild exon 8629909 8630141 . + . gene_id "RvY_06291"; transcript_id "RvY_06291.1"; Scaffold002 rebuild transcript 8630711 8633449 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; annotation "hypothetical protein."; Pfam "[PBP] Phosphatidylethanolamine-binding protein"; Scaffold002 rebuild exon 8630711 8630756 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8631298 8631639 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8631703 8631908 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8631979 8632270 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8632338 8632464 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8632539 8632645 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8632714 8633011 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild exon 8633137 8633449 . + . gene_id "RvY_06292"; transcript_id "RvY_06292.1"; Scaffold002 rebuild transcript 8637379 8638413 . + . gene_id "RvY_06293"; transcript_id "RvY_06293.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold002 rebuild exon 8637379 8638413 . + . gene_id "RvY_06293"; transcript_id "RvY_06293.1"; Scaffold002 rebuild transcript 8641531 8642328 . + . gene_id "RvY_06294"; transcript_id "RvY_06294.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold002 rebuild exon 8641531 8642328 . + . gene_id "RvY_06294"; transcript_id "RvY_06294.1"; Scaffold002 rebuild transcript 8642499 8643290 . + . gene_id "RvY_06295"; transcript_id "RvY_06295.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8642499 8642844 . + . gene_id "RvY_06295"; transcript_id "RvY_06295.1"; Scaffold002 rebuild exon 8643277 8643290 . + . gene_id "RvY_06295"; transcript_id "RvY_06295.1"; Scaffold002 rebuild transcript 8643377 8644987 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.1"; gene_name "(1)PTZ00018"; annotation "hypothetical protein."; CDD "(1)histone 3; Provisional"; similar_genes "(1)H33_HUMAN(e-value:3.6e-15;bit-score:79.0)"; Scaffold002 rebuild exon 8643377 8643571 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.1"; Scaffold002 rebuild exon 8643765 8643833 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.1"; Scaffold002 rebuild exon 8644650 8644856 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.1"; Scaffold002 rebuild exon 8644922 8644987 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.1"; Scaffold002 rebuild transcript 8644470 8644987 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.2"; gene_name "(1)PTZ00018"; annotation "hypothetical protein."; CDD "(1)histone 3; Provisional"; similar_genes "(1)H33_HUMAN(e-value:3.6e-15;bit-score:79.0)"; Scaffold002 rebuild exon 8644470 8644856 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.2"; Scaffold002 rebuild exon 8644922 8644987 . - . gene_id "RvY_06296"; transcript_id "RvY_06296.2"; Scaffold002 rebuild transcript 8645253 8645444 . + . gene_id "RvY_06297"; transcript_id "RvY_06297.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8645253 8645444 . + . gene_id "RvY_06297"; transcript_id "RvY_06297.1"; Scaffold002 rebuild transcript 8645870 8646608 . - . gene_id "RvY_06298"; transcript_id "RvY_06298.1"; annotation "putative RING finger and CCCH-type zinc finger domain-containing protein 2"; similar_genes "RC3H2_MOUSE(e-value:1.9e-37;bit-score:153.0)"; Scaffold002 rebuild exon 8645870 8646155 . - . gene_id "RvY_06298"; transcript_id "RvY_06298.1"; Scaffold002 rebuild exon 8646280 8646608 . - . gene_id "RvY_06298"; transcript_id "RvY_06298.1"; Scaffold002 rebuild transcript 8647088 8647288 . + . gene_id "RvY_06299"; transcript_id "RvY_06299.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8647088 8647288 . + . gene_id "RvY_06299"; transcript_id "RvY_06299.1"; Scaffold002 rebuild transcript 8647935 8648454 . + . gene_id "RvY_06300"; transcript_id "RvY_06300.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8647935 8647983 . + . gene_id "RvY_06300"; transcript_id "RvY_06300.1"; Scaffold002 rebuild exon 8648042 8648454 . + . gene_id "RvY_06300"; transcript_id "RvY_06300.1"; Scaffold002 rebuild transcript 8648545 8650436 . - . gene_id "RvY_06301"; transcript_id "RvY_06301.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8648545 8648963 . - . gene_id "RvY_06301"; transcript_id "RvY_06301.1"; Scaffold002 rebuild exon 8649360 8649630 . - . gene_id "RvY_06301"; transcript_id "RvY_06301.1"; Scaffold002 rebuild exon 8649687 8649998 . - . gene_id "RvY_06301"; transcript_id "RvY_06301.1"; Scaffold002 rebuild exon 8650209 8650436 . - . gene_id "RvY_06301"; transcript_id "RvY_06301.1"; Scaffold002 rebuild transcript 8651154 8651853 . + . gene_id "RvY_06302"; transcript_id "RvY_06302.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8651154 8651273 . + . gene_id "RvY_06302"; transcript_id "RvY_06302.1"; Scaffold002 rebuild exon 8651569 8651853 . + . gene_id "RvY_06302"; transcript_id "RvY_06302.1"; Scaffold002 rebuild transcript 8653141 8654247 . + . gene_id "RvY_06303"; transcript_id "RvY_06303.1"; gene_name "Gst"; annotation "hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]"; Scaffold002 rebuild exon 8653141 8653186 . + . gene_id "RvY_06303"; transcript_id "RvY_06303.1"; Scaffold002 rebuild exon 8653271 8653376 . + . gene_id "RvY_06303"; transcript_id "RvY_06303.1"; Scaffold002 rebuild exon 8653450 8653684 . + . gene_id "RvY_06303"; transcript_id "RvY_06303.1"; Scaffold002 rebuild exon 8653755 8653866 . + . gene_id "RvY_06303"; transcript_id "RvY_06303.1"; Scaffold002 rebuild exon 8653952 8654247 . + . gene_id "RvY_06303"; transcript_id "RvY_06303.1"; Scaffold002 rebuild transcript 8654433 8654768 . - . gene_id "RvY_06304"; transcript_id "RvY_06304.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8654433 8654768 . - . gene_id "RvY_06304"; transcript_id "RvY_06304.1"; Scaffold002 rebuild transcript 8656821 8657722 . + . gene_id "RvY_06305"; transcript_id "RvY_06305.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8656821 8657001 . + . gene_id "RvY_06305"; transcript_id "RvY_06305.1"; Scaffold002 rebuild exon 8657103 8657722 . + . gene_id "RvY_06305"; transcript_id "RvY_06305.1"; Scaffold002 rebuild transcript 8659096 8660702 . + . gene_id "RvY_06306"; transcript_id "RvY_06306.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8659096 8659319 . + . gene_id "RvY_06306"; transcript_id "RvY_06306.1"; Scaffold002 rebuild exon 8659388 8659479 . + . gene_id "RvY_06306"; transcript_id "RvY_06306.1"; Scaffold002 rebuild exon 8659649 8660039 . + . gene_id "RvY_06306"; transcript_id "RvY_06306.1"; Scaffold002 rebuild exon 8660474 8660702 . + . gene_id "RvY_06306"; transcript_id "RvY_06306.1"; Scaffold002 rebuild transcript 8661255 8661443 . + . gene_id "RvY_06307"; transcript_id "RvY_06307.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8661255 8661443 . + . gene_id "RvY_06307"; transcript_id "RvY_06307.1"; Scaffold002 rebuild transcript 8661892 8662156 . - . gene_id "RvY_06308"; transcript_id "RvY_06308.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8661892 8662022 . - . gene_id "RvY_06308"; transcript_id "RvY_06308.1"; Scaffold002 rebuild exon 8662090 8662156 . - . gene_id "RvY_06308"; transcript_id "RvY_06308.1"; Scaffold002 rebuild transcript 8663288 8666323 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.1"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8663288 8663373 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.1"; Scaffold002 rebuild exon 8663440 8663480 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.1"; Scaffold002 rebuild exon 8665998 8666323 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.1"; Scaffold002 rebuild transcript 8666229 8666916 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.2"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8666229 8666240 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.2"; Scaffold002 rebuild exon 8666332 8666438 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.2"; Scaffold002 rebuild exon 8666505 8666604 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.2"; Scaffold002 rebuild exon 8666698 8666916 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.2"; Scaffold002 rebuild transcript 8665994 8666323 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.3"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8665994 8666323 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.3"; Scaffold002 rebuild transcript 8666605 8666916 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.4"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8666605 8666916 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.4"; Scaffold002 rebuild transcript 8666852 8667154 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.5"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8666852 8667154 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.5"; Scaffold002 rebuild transcript 8662936 8663533 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.6"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8662936 8663034 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.6"; Scaffold002 rebuild exon 8663098 8663195 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.6"; Scaffold002 rebuild exon 8663440 8663533 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.6"; Scaffold002 rebuild transcript 8662769 8663020 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.7"; annotation "hypothetical protein."; Pfam "[Hist_deacetyl] Histone deacetylase domain"; Scaffold002 rebuild exon 8662769 8663020 . - . gene_id "RvY_06309"; transcript_id "RvY_06309.7"; Scaffold002 rebuild transcript 8668725 8669305 . - . gene_id "RvY_06310"; transcript_id "RvY_06310.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8668725 8669006 . - . gene_id "RvY_06310"; transcript_id "RvY_06310.1"; Scaffold002 rebuild exon 8669076 8669155 . - . gene_id "RvY_06310"; transcript_id "RvY_06310.1"; Scaffold002 rebuild exon 8669233 8669305 . - . gene_id "RvY_06310"; transcript_id "RvY_06310.1"; Scaffold002 rebuild transcript 8673152 8674608 . + . gene_id "RvY_06311"; transcript_id "RvY_06311.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8673152 8673200 . + . gene_id "RvY_06311"; transcript_id "RvY_06311.1"; Scaffold002 rebuild exon 8673964 8674196 . + . gene_id "RvY_06311"; transcript_id "RvY_06311.1"; Scaffold002 rebuild exon 8674273 8674608 . + . gene_id "RvY_06311"; transcript_id "RvY_06311.1"; Scaffold002 rebuild transcript 8675056 8676730 . - . gene_id "RvY_06312"; transcript_id "RvY_06312.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold002 rebuild exon 8675056 8675951 . - . gene_id "RvY_06312"; transcript_id "RvY_06312.1"; Scaffold002 rebuild exon 8676214 8676730 . - . gene_id "RvY_06312"; transcript_id "RvY_06312.1"; Scaffold002 rebuild transcript 8677016 8677183 . - . gene_id "RvY_06313"; transcript_id "RvY_06313.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8677016 8677183 . - . gene_id "RvY_06313"; transcript_id "RvY_06313.1"; Scaffold002 rebuild transcript 8677577 8680714 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8677577 8677694 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; Scaffold002 rebuild exon 8677773 8677860 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; Scaffold002 rebuild exon 8677932 8678049 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; Scaffold002 rebuild exon 8678120 8678302 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; Scaffold002 rebuild exon 8680025 8680075 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; Scaffold002 rebuild exon 8680628 8680714 . - . gene_id "RvY_06314"; transcript_id "RvY_06314.1"; Scaffold002 rebuild transcript 8679165 8679425 . + . gene_id "RvY_06315"; transcript_id "RvY_06315.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8679165 8679425 . + . gene_id "RvY_06315"; transcript_id "RvY_06315.1"; Scaffold002 rebuild transcript 8681019 8682179 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8681019 8681113 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.1"; Scaffold002 rebuild exon 8681196 8681413 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.1"; Scaffold002 rebuild exon 8681515 8681601 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.1"; Scaffold002 rebuild exon 8681678 8681741 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.1"; Scaffold002 rebuild exon 8681822 8682179 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.1"; Scaffold002 rebuild transcript 8681709 8682179 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8681709 8682179 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.2"; Scaffold002 rebuild transcript 8680981 8681436 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8680981 8681436 . - . gene_id "RvY_06316"; transcript_id "RvY_06316.3"; Scaffold002 rebuild transcript 8684896 8686360 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.1"; gene_name "(2)CYCc"; annotation "(1,3,4)putative Atrial natriuretic peptide receptor 1(2)hypothetical protein."; Pfam "(1,3,4)[Pkinase] Protein kinase domain|(1,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(2)[HNOBA] Heme NO binding associated|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,3,4)ANPRA_HUMAN(e-value:3.5e-30;bit-score:129.0)(2)ANPRA_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 8684896 8685402 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.1"; Scaffold002 rebuild exon 8685473 8685520 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.1"; Scaffold002 rebuild exon 8685598 8685675 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.1"; Scaffold002 rebuild exon 8685743 8685958 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.1"; Scaffold002 rebuild exon 8686019 8686360 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.1"; Scaffold002 rebuild transcript 8682961 8685167 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; gene_name "(2)CYCc"; annotation "(1,3,4)putative Atrial natriuretic peptide receptor 1(2)hypothetical protein."; Pfam "(1,3,4)[Pkinase] Protein kinase domain|(1,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(2)[HNOBA] Heme NO binding associated|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,3,4)ANPRA_HUMAN(e-value:3.5e-30;bit-score:129.0)(2)ANPRA_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 8682961 8683017 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8683449 8683543 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8683625 8683674 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8683754 8683956 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8684024 8684050 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8684135 8684240 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8684316 8684402 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8684493 8684580 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8684643 8684670 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild exon 8684757 8685167 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.2"; Scaffold002 rebuild transcript 8684896 8686360 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; gene_name "(2)CYCc"; annotation "(1,3,4)putative Atrial natriuretic peptide receptor 1(2)hypothetical protein."; Pfam "(1,3,4)[Pkinase] Protein kinase domain|(1,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(2)[HNOBA] Heme NO binding associated|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,3,4)ANPRA_HUMAN(e-value:3.5e-30;bit-score:129.0)(2)ANPRA_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 8684896 8685402 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; Scaffold002 rebuild exon 8685473 8685520 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; Scaffold002 rebuild exon 8685598 8685675 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; Scaffold002 rebuild exon 8685743 8685958 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; Scaffold002 rebuild exon 8686019 8686082 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; Scaffold002 rebuild exon 8686158 8686360 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.3"; Scaffold002 rebuild transcript 8684896 8685817 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.4"; gene_name "(2)CYCc"; annotation "(1,3,4)putative Atrial natriuretic peptide receptor 1(2)hypothetical protein."; Pfam "(1,3,4)[Pkinase] Protein kinase domain|(1,3,4)[Pkinase_Tyr] Protein tyrosine kinase|(2)[HNOBA] Heme NO binding associated|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1,3,4)ANPRA_HUMAN(e-value:3.5e-30;bit-score:129.0)(2)ANPRA_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 8684896 8685402 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.4"; Scaffold002 rebuild exon 8685473 8685520 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.4"; Scaffold002 rebuild exon 8685598 8685675 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.4"; Scaffold002 rebuild exon 8685743 8685817 . - . gene_id "RvY_06317"; transcript_id "RvY_06317.4"; Scaffold002 rebuild transcript 8686476 8688749 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold002 rebuild exon 8686476 8686706 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8686920 8686970 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8687054 8687203 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8687335 8687415 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8687485 8687523 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8687589 8687632 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8687889 8688063 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild exon 8688150 8688749 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.1"; Scaffold002 rebuild transcript 8687284 8688749 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.2"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold002 rebuild exon 8687284 8687415 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.2"; Scaffold002 rebuild exon 8687485 8687523 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.2"; Scaffold002 rebuild exon 8687589 8687632 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.2"; Scaffold002 rebuild exon 8687889 8688063 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.2"; Scaffold002 rebuild exon 8688150 8688749 . - . gene_id "RvY_06318"; transcript_id "RvY_06318.2"; Scaffold002 rebuild transcript 8693082 8693677 . + . gene_id "RvY_06319"; transcript_id "RvY_06319.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc3_2] Transposase"; Scaffold002 rebuild exon 8693082 8693216 . + . gene_id "RvY_06319"; transcript_id "RvY_06319.1"; Scaffold002 rebuild exon 8693225 8693677 . + . gene_id "RvY_06319"; transcript_id "RvY_06319.1"; Scaffold002 rebuild transcript 8695880 8696284 . + . gene_id "RvY_06320"; transcript_id "RvY_06320.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8695880 8696284 . + . gene_id "RvY_06320"; transcript_id "RvY_06320.1"; Scaffold002 rebuild transcript 8696292 8696823 . + . gene_id "RvY_06321"; transcript_id "RvY_06321.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8696292 8696585 . + . gene_id "RvY_06321"; transcript_id "RvY_06321.1"; Scaffold002 rebuild exon 8696659 8696823 . + . gene_id "RvY_06321"; transcript_id "RvY_06321.1"; Scaffold002 rebuild transcript 8697595 8698140 . - . gene_id "RvY_06322"; transcript_id "RvY_06322.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8697595 8697633 . - . gene_id "RvY_06322"; transcript_id "RvY_06322.1"; Scaffold002 rebuild exon 8697994 8698140 . - . gene_id "RvY_06322"; transcript_id "RvY_06322.1"; Scaffold002 rebuild transcript 8698293 8699647 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; gene_name "Annexin"; annotation "putative Annexin A5"; Pfam "[Annexin]"; CDD "Annexin. This family of annexins also includes giardin that has been shown to function as an annexin."; similar_genes "ANXA5_RAT(e-value:3.1e-29;bit-score:126.0)"; Scaffold002 rebuild exon 8698293 8698404 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; Scaffold002 rebuild exon 8698470 8698564 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; Scaffold002 rebuild exon 8698629 8698833 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; Scaffold002 rebuild exon 8698923 8699002 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; Scaffold002 rebuild exon 8699076 8699322 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; Scaffold002 rebuild exon 8699409 8699647 . + . gene_id "RvY_06323"; transcript_id "RvY_06323.1"; Scaffold002 rebuild transcript 8700275 8702708 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; gene_name "Annexin"; annotation "putative Annexin A8"; Pfam "[Annexin]"; CDD "Annexin. This family of annexins also includes giardin that has been shown to function as an annexin."; similar_genes "ANXA8_HUMAN(e-value:6.0e-28;bit-score:122.0)"; Scaffold002 rebuild exon 8700275 8700489 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8700555 8700616 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8701274 8701368 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8701443 8701490 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8701581 8701646 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8701726 8701899 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8701962 8702220 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8702283 8702507 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild exon 8702572 8702708 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.1"; Scaffold002 rebuild transcript 8700275 8702637 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; gene_name "Annexin"; annotation "putative Annexin A8"; Pfam "[Annexin]"; CDD "Annexin. This family of annexins also includes giardin that has been shown to function as an annexin."; similar_genes "ANXA8_HUMAN(e-value:6.0e-28;bit-score:122.0)"; Scaffold002 rebuild exon 8700275 8700489 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8700555 8700616 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8701274 8701368 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8701443 8701490 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8701581 8701646 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8701726 8701899 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8701962 8702220 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8702283 8702404 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8702463 8702507 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild exon 8702572 8702637 . + . gene_id "RvY_06324"; transcript_id "RvY_06324.2"; Scaffold002 rebuild transcript 8702999 8705852 . - . gene_id "RvY_06325"; transcript_id "RvY_06325.1"; annotation "hypothetical protein."; Pfam "[WH2] WH2 motif"; Scaffold002 rebuild exon 8702999 8703141 . - . gene_id "RvY_06325"; transcript_id "RvY_06325.1"; Scaffold002 rebuild exon 8703430 8703923 . - . gene_id "RvY_06325"; transcript_id "RvY_06325.1"; Scaffold002 rebuild exon 8703989 8704481 . - . gene_id "RvY_06325"; transcript_id "RvY_06325.1"; Scaffold002 rebuild exon 8704840 8705028 . - . gene_id "RvY_06325"; transcript_id "RvY_06325.1"; Scaffold002 rebuild exon 8705660 8705852 . - . gene_id "RvY_06325"; transcript_id "RvY_06325.1"; Scaffold002 rebuild transcript 8707095 8708466 . + . gene_id "RvY_06326"; transcript_id "RvY_06326.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8707095 8707611 . + . gene_id "RvY_06326"; transcript_id "RvY_06326.1"; Scaffold002 rebuild exon 8707811 8708466 . + . gene_id "RvY_06326"; transcript_id "RvY_06326.1"; Scaffold002 rebuild transcript 8708473 8708895 . - . gene_id "RvY_06327"; transcript_id "RvY_06327.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8708473 8708895 . - . gene_id "RvY_06327"; transcript_id "RvY_06327.1"; Scaffold002 rebuild transcript 8708993 8709997 . - . gene_id "RvY_06328"; transcript_id "RvY_06328.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8708993 8709155 . - . gene_id "RvY_06328"; transcript_id "RvY_06328.1"; Scaffold002 rebuild exon 8709263 8709591 . - . gene_id "RvY_06328"; transcript_id "RvY_06328.1"; Scaffold002 rebuild exon 8709683 8709997 . - . gene_id "RvY_06328"; transcript_id "RvY_06328.1"; Scaffold002 rebuild transcript 8709690 8710180 . + . gene_id "RvY_06329"; transcript_id "RvY_06329.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8709690 8709842 . + . gene_id "RvY_06329"; transcript_id "RvY_06329.1"; Scaffold002 rebuild exon 8709968 8710180 . + . gene_id "RvY_06329"; transcript_id "RvY_06329.1"; Scaffold002 rebuild transcript 8712051 8712347 . - . gene_id "RvY_06330"; transcript_id "RvY_06330.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8712051 8712206 . - . gene_id "RvY_06330"; transcript_id "RvY_06330.1"; Scaffold002 rebuild exon 8712237 8712347 . - . gene_id "RvY_06330"; transcript_id "RvY_06330.1"; Scaffold002 rebuild transcript 8714087 8714707 . + . gene_id "RvY_06331"; transcript_id "RvY_06331.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold002 rebuild exon 8714087 8714707 . + . gene_id "RvY_06331"; transcript_id "RvY_06331.1"; Scaffold002 rebuild transcript 8719451 8720920 . + . gene_id "RvY_06332"; transcript_id "RvY_06332.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8719451 8719838 . + . gene_id "RvY_06332"; transcript_id "RvY_06332.1"; Scaffold002 rebuild exon 8719900 8720540 . + . gene_id "RvY_06332"; transcript_id "RvY_06332.1"; Scaffold002 rebuild exon 8720609 8720920 . + . gene_id "RvY_06332"; transcript_id "RvY_06332.1"; Scaffold002 rebuild transcript 8722908 8723126 . - . gene_id "RvY_06333"; transcript_id "RvY_06333.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8722908 8723126 . - . gene_id "RvY_06333"; transcript_id "RvY_06333.1"; Scaffold002 rebuild transcript 8723537 8724950 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8723537 8723717 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild exon 8723792 8723891 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild exon 8723964 8724099 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild exon 8724426 8724476 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild exon 8724560 8724697 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild exon 8724775 8724852 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild exon 8724933 8724950 . - . gene_id "RvY_06334"; transcript_id "RvY_06334.1"; Scaffold002 rebuild transcript 8725721 8727753 . - . gene_id "RvY_06335"; transcript_id "RvY_06335.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold002 rebuild exon 8725721 8726204 . - . gene_id "RvY_06335"; transcript_id "RvY_06335.1"; Scaffold002 rebuild exon 8726273 8726297 . - . gene_id "RvY_06335"; transcript_id "RvY_06335.1"; Scaffold002 rebuild exon 8726398 8726439 . - . gene_id "RvY_06335"; transcript_id "RvY_06335.1"; Scaffold002 rebuild exon 8727228 8727443 . - . gene_id "RvY_06335"; transcript_id "RvY_06335.1"; Scaffold002 rebuild exon 8727570 8727753 . - . gene_id "RvY_06335"; transcript_id "RvY_06335.1"; Scaffold002 rebuild transcript 8726576 8727465 . + . gene_id "RvY_06336"; transcript_id "RvY_06336.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8726576 8726716 . + . gene_id "RvY_06336"; transcript_id "RvY_06336.1"; Scaffold002 rebuild exon 8727217 8727465 . + . gene_id "RvY_06336"; transcript_id "RvY_06336.1"; Scaffold002 rebuild transcript 8730447 8730791 . - . gene_id "RvY_06337"; transcript_id "RvY_06337.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8730447 8730791 . - . gene_id "RvY_06337"; transcript_id "RvY_06337.1"; Scaffold002 rebuild transcript 8733886 8734077 . + . gene_id "RvY_06338"; transcript_id "RvY_06338.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8733886 8734077 . + . gene_id "RvY_06338"; transcript_id "RvY_06338.1"; Scaffold002 rebuild transcript 8739670 8742637 . + . gene_id "RvY_06339"; transcript_id "RvY_06339.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; Scaffold002 rebuild exon 8739670 8740191 . + . gene_id "RvY_06339"; transcript_id "RvY_06339.1"; Scaffold002 rebuild exon 8742449 8742637 . + . gene_id "RvY_06339"; transcript_id "RvY_06339.1"; Scaffold002 rebuild transcript 8743868 8744083 . + . gene_id "RvY_06340"; transcript_id "RvY_06340.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8743868 8744083 . + . gene_id "RvY_06340"; transcript_id "RvY_06340.1"; Scaffold002 rebuild transcript 8745514 8745879 . - . gene_id "RvY_06341"; transcript_id "RvY_06341.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8745514 8745879 . - . gene_id "RvY_06341"; transcript_id "RvY_06341.1"; Scaffold002 rebuild transcript 8746047 8748743 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.1"; gene_name "(1,2)COG3889"; annotation "hypothetical protein."; CDD "(1,2)Predicted solute binding protein [General function prediction only]"; similar_genes "GP2_EHV1V(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 8746047 8746099 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.1"; Scaffold002 rebuild exon 8746186 8747694 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.1"; Scaffold002 rebuild exon 8748680 8748743 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.1"; Scaffold002 rebuild transcript 8746047 8748743 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.2"; gene_name "(1,2)COG3889"; annotation "hypothetical protein."; CDD "(1,2)Predicted solute binding protein [General function prediction only]"; similar_genes "GP2_EHV1V(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 8746047 8746099 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.2"; Scaffold002 rebuild exon 8746186 8747688 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.2"; Scaffold002 rebuild exon 8748680 8748743 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.2"; Scaffold002 rebuild transcript 8746047 8747401 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.3"; gene_name "(1,2)COG3889"; annotation "hypothetical protein."; CDD "(1,2)Predicted solute binding protein [General function prediction only]"; similar_genes "GP2_EHV1V(e-value:1.2e-07;bit-score:55.0)"; Scaffold002 rebuild exon 8746047 8746099 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.3"; Scaffold002 rebuild exon 8746186 8747401 . - . gene_id "RvY_06342"; transcript_id "RvY_06342.3"; Scaffold002 rebuild transcript 8750508 8751020 . - . gene_id "RvY_06343"; transcript_id "RvY_06343.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8750508 8751020 . - . gene_id "RvY_06343"; transcript_id "RvY_06343.1"; Scaffold002 rebuild transcript 8754865 8759035 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; gene_name "AmtB"; annotation "hypothetical protein."; Pfam "[Ammonium_transp] Ammonium Transporter Family"; CDD "Ammonia permease [Inorganic ion transport and metabolism]"; similar_genes "AMT2_SCHPO(e-value:1.7e-25;bit-score:114.0)"; Scaffold002 rebuild exon 8754865 8754905 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8754973 8755180 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8755272 8755642 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8756118 8756212 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8756278 8756626 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8757008 8757171 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8757281 8757369 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8757921 8758043 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild exon 8758733 8759035 . + . gene_id "RvY_06344"; transcript_id "RvY_06344.1"; Scaffold002 rebuild transcript 8757900 8758112 . - . gene_id "RvY_06345"; transcript_id "RvY_06345.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8757900 8758112 . - . gene_id "RvY_06345"; transcript_id "RvY_06345.1"; Scaffold002 rebuild transcript 8760377 8761713 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "(1)P2RX4_HUMAN(e-value:5.3e-12;bit-score:69.0)"; Scaffold002 rebuild exon 8760377 8760536 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; Scaffold002 rebuild exon 8760608 8760688 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; Scaffold002 rebuild exon 8760867 8761105 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; Scaffold002 rebuild exon 8761160 8761304 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; Scaffold002 rebuild exon 8761392 8761484 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; Scaffold002 rebuild exon 8761559 8761713 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.1"; Scaffold002 rebuild transcript 8759327 8760415 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "(1)P2RX4_HUMAN(e-value:5.3e-12;bit-score:69.0)"; Scaffold002 rebuild exon 8759327 8759590 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; Scaffold002 rebuild exon 8759675 8759761 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; Scaffold002 rebuild exon 8759830 8759989 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; Scaffold002 rebuild exon 8760053 8760154 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; Scaffold002 rebuild exon 8760273 8760301 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; Scaffold002 rebuild exon 8760395 8760415 . - . gene_id "RvY_06346"; transcript_id "RvY_06346.2"; Scaffold002 rebuild transcript 8763759 8764846 . + . gene_id "RvY_06347"; transcript_id "RvY_06347.2"; annotation "hypothetical protein."; similar_genes "K1C10_CANFA(e-value:2.5e-22;bit-score:103.0)"; Scaffold002 rebuild exon 8763759 8764089 . + . gene_id "RvY_06347"; transcript_id "RvY_06347.2"; Scaffold002 rebuild exon 8764172 8764723 . + . gene_id "RvY_06347"; transcript_id "RvY_06347.2"; Scaffold002 rebuild exon 8764827 8764846 . + . gene_id "RvY_06347"; transcript_id "RvY_06347.2"; Scaffold002 rebuild transcript 8765685 8775082 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; gene_name "MDN1"; annotation "(1)putative Midasin(2)hypothetical protein."; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; KO "(1)K14572"; similar_genes "(1)MDN1_HUMAN(e-value:2.0e-43;bit-score:173.0)(2)MDN1_DICDI(e-value:3.9e-06;bit-score:49.0)"; Scaffold002 rebuild exon 8765685 8765819 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8765964 8766230 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8766520 8766708 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8766881 8767055 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8767196 8767380 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8767500 8767927 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8768004 8768327 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8768424 8768937 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8769124 8769278 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8769358 8769496 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8769589 8769732 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8769791 8770003 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8770130 8770537 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8770594 8770785 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8770849 8771055 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8771138 8771478 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8771616 8772080 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8772211 8772550 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8772777 8772892 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8772961 8773387 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8773605 8773845 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8773912 8774150 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8774215 8774430 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8774495 8774689 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild exon 8774777 8775082 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.1"; Scaffold002 rebuild transcript 8769350 8775082 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; gene_name "MDN1"; annotation "(1)putative Midasin(2)hypothetical protein."; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; KO "(1)K14572"; similar_genes "(1)MDN1_HUMAN(e-value:2.0e-43;bit-score:173.0)(2)MDN1_DICDI(e-value:3.9e-06;bit-score:49.0)"; Scaffold002 rebuild exon 8769350 8769496 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8769589 8769732 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8769791 8770003 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8770130 8770537 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8770594 8770785 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8770849 8771055 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8771138 8771478 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8771616 8772080 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8772211 8772550 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8772777 8772892 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8772961 8773387 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8773605 8773845 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8773912 8774150 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8774215 8774430 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8774495 8774689 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild exon 8774777 8775082 . - . gene_id "RvY_06348"; transcript_id "RvY_06348.2"; Scaffold002 rebuild transcript 8775153 8785523 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; gene_name "MDN1"; annotation "Midasin"; Pfam "[MCM] MCM2/3/5 family|[Arch_ATPase] Archaeal ATPase|[MobB] Molybdopterin guanine dinucleotide synthesis protein B|[AAA_16] AAA ATPase domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[T2SE] Type II/IV secretion system protein|[AAA_23] AAA domain|[AAA_29] P-loop containing region of AAA domain|[AAA_14] AAA domain|[AAA_22] AAA domain|[AAA_3] ATPase family associated with various cellular activities (AAA)|[IstB_IS21] IstB-like ATP binding protein|[Miro] Miro-like protein|[Sigma54_activat] Sigma-54 interaction domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA_25] AAA domain|[UPF0079] Uncharacterised P-loop hydrolase UPF0079|[DUF815]|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_19] Part of AAA domain|[AAA_28] AAA domain|[DUF258] Protein of unknown function, DUF258|[AAA_17] AAA domain|[AAA_2] AAA domain (Cdc48 subfamily)|[NACHT]|[Zeta_toxin] Zeta toxin|[AAA_30] AAA domain|[RNA_helicase] RNA helicase|[AAA_33] AAA domain|[PduV-EutP] Ethanolamine utilisation - propanediol utilisation|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; KO "K14572"; similar_genes "MDN1_HUMAN(e-value:1.2e-94;bit-score:344.0)"; Scaffold002 rebuild exon 8775153 8775428 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8775617 8775927 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8776061 8776433 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8776492 8777144 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8777252 8777629 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8777691 8778078 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8778306 8778614 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8778731 8778928 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8779054 8779173 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8779235 8779440 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8779692 8780017 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8780097 8780287 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8780444 8780634 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8780720 8780879 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8780964 8781277 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8781544 8781691 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8781746 8782101 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8782207 8782448 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8782509 8782790 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8782881 8783168 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8783316 8783452 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8783520 8784512 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8784575 8784677 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8784935 8785098 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8785165 8785236 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild exon 8785320 8785523 . - . gene_id "RvY_06349"; transcript_id "RvY_06349.1"; Scaffold002 rebuild transcript 8785988 8787629 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; gene_name "EKI1"; annotation "ethanolamine kinase [EC:2.7.1.82]"; Pfam "[APH] Phosphotransferase enzyme family|[Choline_kinase] Choline/ethanolamine kinase|[EcKinase] Ecdysteroid kinase"; CDD "Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryonic development. It may also have a role in testicular maturation."; EC "EC2.7.1.82"; KO "K00894"; similar_genes "EKI1_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold002 rebuild exon 8785988 8786057 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild exon 8786144 8786396 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild exon 8786469 8786552 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild exon 8786617 8786774 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild exon 8786848 8786997 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild exon 8787093 8787352 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild exon 8787432 8787629 . - . gene_id "RvY_06350"; transcript_id "RvY_06350.1"; Scaffold002 rebuild transcript 8788042 8790157 . - . gene_id "RvY_06351"; transcript_id "RvY_06351.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold002 rebuild exon 8788042 8788451 . - . gene_id "RvY_06351"; transcript_id "RvY_06351.1"; Scaffold002 rebuild exon 8788522 8788796 . - . gene_id "RvY_06351"; transcript_id "RvY_06351.1"; Scaffold002 rebuild exon 8788922 8789001 . - . gene_id "RvY_06351"; transcript_id "RvY_06351.1"; Scaffold002 rebuild exon 8789070 8789680 . - . gene_id "RvY_06351"; transcript_id "RvY_06351.1"; Scaffold002 rebuild exon 8789746 8790157 . - . gene_id "RvY_06351"; transcript_id "RvY_06351.1"; Scaffold002 rebuild transcript 8793312 8794523 . + . gene_id "RvY_06352"; transcript_id "RvY_06352.1"; gene_name "PBPb"; annotation "hypothetical protein."; Pfam "[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; CDD "Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD."; Scaffold002 rebuild exon 8793312 8793491 . + . gene_id "RvY_06352"; transcript_id "RvY_06352.1"; Scaffold002 rebuild exon 8793586 8793750 . + . gene_id "RvY_06352"; transcript_id "RvY_06352.1"; Scaffold002 rebuild exon 8793837 8794040 . + . gene_id "RvY_06352"; transcript_id "RvY_06352.1"; Scaffold002 rebuild exon 8794112 8794343 . + . gene_id "RvY_06352"; transcript_id "RvY_06352.1"; Scaffold002 rebuild exon 8794426 8794523 . + . gene_id "RvY_06352"; transcript_id "RvY_06352.1"; Scaffold002 rebuild transcript 8797764 8798111 . - . gene_id "RvY_06353"; transcript_id "RvY_06353.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8797764 8798111 . - . gene_id "RvY_06353"; transcript_id "RvY_06353.1"; Scaffold002 rebuild transcript 8799610 8799900 . - . gene_id "RvY_06354"; transcript_id "RvY_06354.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8799610 8799900 . - . gene_id "RvY_06354"; transcript_id "RvY_06354.1"; Scaffold002 rebuild transcript 8799791 8802414 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; gene_name "CHRNN"; annotation "putative Acetylcholine receptor subunit beta-type unc-29"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K05312"; similar_genes "ACH2_CAEEL(e-value:8.7e-42;bit-score:168.0)"; Scaffold002 rebuild exon 8799791 8799878 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild exon 8799940 8800076 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild exon 8800199 8800243 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild exon 8800581 8800690 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild exon 8800894 8801023 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild exon 8801169 8802158 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild exon 8802259 8802414 . + . gene_id "RvY_06355"; transcript_id "RvY_06355.1"; Scaffold002 rebuild transcript 8803392 8804390 . + . gene_id "RvY_06356"; transcript_id "RvY_06356.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8803392 8803519 . + . gene_id "RvY_06356"; transcript_id "RvY_06356.1"; Scaffold002 rebuild exon 8803596 8803742 . + . gene_id "RvY_06356"; transcript_id "RvY_06356.1"; Scaffold002 rebuild exon 8803895 8803933 . + . gene_id "RvY_06356"; transcript_id "RvY_06356.1"; Scaffold002 rebuild exon 8804024 8804086 . + . gene_id "RvY_06356"; transcript_id "RvY_06356.1"; Scaffold002 rebuild exon 8804168 8804390 . + . gene_id "RvY_06356"; transcript_id "RvY_06356.1"; Scaffold002 rebuild transcript 8804706 8804999 . - . gene_id "RvY_06357"; transcript_id "RvY_06357.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8804706 8804757 . - . gene_id "RvY_06357"; transcript_id "RvY_06357.1"; Scaffold002 rebuild exon 8804833 8804999 . - . gene_id "RvY_06357"; transcript_id "RvY_06357.1"; Scaffold002 rebuild transcript 8807886 8808089 . + . gene_id "RvY_06358"; transcript_id "RvY_06358.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8807886 8808089 . + . gene_id "RvY_06358"; transcript_id "RvY_06358.1"; Scaffold002 rebuild transcript 8808543 8811840 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; gene_name "ppx"; annotation "exopolyphosphatase [EC:3.6.1.11]"; Pfam "[DHH] DHH family|[DHHA2]"; CDD "Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]"; EC "EC3.6.1.11"; KO "K01514"; Scaffold002 rebuild exon 8808543 8809178 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; Scaffold002 rebuild exon 8809424 8809564 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; Scaffold002 rebuild exon 8809631 8810000 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; Scaffold002 rebuild exon 8810145 8810434 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; Scaffold002 rebuild exon 8810589 8810708 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; Scaffold002 rebuild exon 8811781 8811840 . - . gene_id "RvY_06359"; transcript_id "RvY_06359.1"; Scaffold002 rebuild transcript 8812295 8813944 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; gene_name "KIN"; annotation "putative DNA/RNA-binding protein KIN17"; Pfam "[Kin17_mid] Domain of Kin17 curved DNA-binding protein"; KO "K13102"; similar_genes "KIN17_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold002 rebuild exon 8812295 8812408 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild exon 8812473 8812734 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild exon 8812822 8813049 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild exon 8813114 8813210 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild exon 8813274 8813529 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild exon 8813592 8813795 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild exon 8813870 8813944 . + . gene_id "RvY_06360"; transcript_id "RvY_06360.1"; Scaffold002 rebuild transcript 8814312 8814515 . - . gene_id "RvY_06361"; transcript_id "RvY_06361.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8814312 8814515 . - . gene_id "RvY_06361"; transcript_id "RvY_06361.1"; Scaffold002 rebuild transcript 8816664 8818384 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8816664 8816889 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.1"; Scaffold002 rebuild exon 8818263 8818384 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.1"; Scaffold002 rebuild transcript 8816664 8818347 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8816664 8816889 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.2"; Scaffold002 rebuild exon 8818268 8818347 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.2"; Scaffold002 rebuild transcript 8816525 8816725 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.3"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8816525 8816725 . - . gene_id "RvY_06362"; transcript_id "RvY_06362.3"; Scaffold002 rebuild transcript 8816925 8817458 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 8816925 8817458 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.1"; Scaffold002 rebuild transcript 8818167 8818472 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.2"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 8818167 8818472 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.2"; Scaffold002 rebuild transcript 8816925 8818329 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.3"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold002 rebuild exon 8816925 8816966 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.3"; Scaffold002 rebuild exon 8818069 8818329 . + . gene_id "RvY_06363"; transcript_id "RvY_06363.3"; Scaffold002 rebuild transcript 8820405 8820798 . - . gene_id "RvY_06364"; transcript_id "RvY_06364.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8820405 8820613 . - . gene_id "RvY_06364"; transcript_id "RvY_06364.1"; Scaffold002 rebuild exon 8820681 8820798 . - . gene_id "RvY_06364"; transcript_id "RvY_06364.1"; Scaffold002 rebuild transcript 8821379 8822325 . + . gene_id "RvY_06365"; transcript_id "RvY_06365.1"; gene_name "3a0801s09"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat"; CDD "mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)."; similar_genes "TTC1_BOVIN(e-value:6.1e-13;bit-score:72.0)"; Scaffold002 rebuild exon 8821379 8821480 . + . gene_id "RvY_06365"; transcript_id "RvY_06365.1"; Scaffold002 rebuild exon 8821552 8821777 . + . gene_id "RvY_06365"; transcript_id "RvY_06365.1"; Scaffold002 rebuild exon 8821997 8822325 . + . gene_id "RvY_06365"; transcript_id "RvY_06365.1"; Scaffold002 rebuild transcript 8822434 8823589 . - . gene_id "RvY_06366"; transcript_id "RvY_06366.1"; gene_name "RRP40"; annotation "exosome complex component RRP40"; CDD "RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]"; KO "K03681"; Scaffold002 rebuild exon 8822434 8822716 . - . gene_id "RvY_06366"; transcript_id "RvY_06366.1"; Scaffold002 rebuild exon 8822790 8822941 . - . gene_id "RvY_06366"; transcript_id "RvY_06366.1"; Scaffold002 rebuild exon 8823094 8823267 . - . gene_id "RvY_06366"; transcript_id "RvY_06366.1"; Scaffold002 rebuild exon 8823344 8823589 . - . gene_id "RvY_06366"; transcript_id "RvY_06366.1"; Scaffold002 rebuild transcript 8824049 8825208 . + . gene_id "RvY_06367"; transcript_id "RvY_06367.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold002 rebuild exon 8824049 8824144 . + . gene_id "RvY_06367"; transcript_id "RvY_06367.1"; Scaffold002 rebuild exon 8824325 8824559 . + . gene_id "RvY_06367"; transcript_id "RvY_06367.1"; Scaffold002 rebuild exon 8824631 8824826 . + . gene_id "RvY_06367"; transcript_id "RvY_06367.1"; Scaffold002 rebuild exon 8824848 8825208 . + . gene_id "RvY_06367"; transcript_id "RvY_06367.1"; Scaffold002 rebuild transcript 8825979 8827447 . + . gene_id "RvY_06368"; transcript_id "RvY_06368.1"; gene_name "NRF1"; annotation "nuclear respiratory factor 1"; Pfam "[Nrf1_DNA-bind] NLS-binding and DNA-binding and dimerisation domains of Nrf1"; KO "K11831"; similar_genes "NRF1_HUMAN(e-value:1.2e-13;bit-score:74.0)"; Scaffold002 rebuild exon 8825979 8826180 . + . gene_id "RvY_06368"; transcript_id "RvY_06368.1"; Scaffold002 rebuild exon 8826353 8826612 . + . gene_id "RvY_06368"; transcript_id "RvY_06368.1"; Scaffold002 rebuild exon 8826687 8826915 . + . gene_id "RvY_06368"; transcript_id "RvY_06368.1"; Scaffold002 rebuild exon 8826985 8827272 . + . gene_id "RvY_06368"; transcript_id "RvY_06368.1"; Scaffold002 rebuild exon 8827350 8827447 . + . gene_id "RvY_06368"; transcript_id "RvY_06368.1"; Scaffold002 rebuild transcript 8827614 8828028 . + . gene_id "RvY_06369"; transcript_id "RvY_06369.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8827614 8827639 . + . gene_id "RvY_06369"; transcript_id "RvY_06369.1"; Scaffold002 rebuild exon 8827719 8828028 . + . gene_id "RvY_06369"; transcript_id "RvY_06369.1"; Scaffold002 rebuild transcript 8828306 8828719 . - . gene_id "RvY_06370"; transcript_id "RvY_06370.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8828306 8828719 . - . gene_id "RvY_06370"; transcript_id "RvY_06370.1"; Scaffold002 rebuild transcript 8829183 8829386 . - . gene_id "RvY_06371"; transcript_id "RvY_06371.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8829183 8829386 . - . gene_id "RvY_06371"; transcript_id "RvY_06371.1"; Scaffold002 rebuild transcript 8832080 8834667 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold002 rebuild exon 8832080 8832267 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; Scaffold002 rebuild exon 8832484 8832606 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; Scaffold002 rebuild exon 8832681 8832857 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; Scaffold002 rebuild exon 8832980 8833528 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; Scaffold002 rebuild exon 8834266 8834483 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; Scaffold002 rebuild exon 8834657 8834667 . - . gene_id "RvY_06372"; transcript_id "RvY_06372.1"; Scaffold002 rebuild transcript 8835504 8837176 . + . gene_id "RvY_06373"; transcript_id "RvY_06373.1"; annotation "putative Sodium- and chloride-dependent taurine transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A6_MOUSE(e-value:8.5e-38;bit-score:155.0)"; Scaffold002 rebuild exon 8835504 8835795 . + . gene_id "RvY_06373"; transcript_id "RvY_06373.1"; Scaffold002 rebuild exon 8835885 8836016 . + . gene_id "RvY_06373"; transcript_id "RvY_06373.1"; Scaffold002 rebuild exon 8836075 8836348 . + . gene_id "RvY_06373"; transcript_id "RvY_06373.1"; Scaffold002 rebuild exon 8836414 8836546 . + . gene_id "RvY_06373"; transcript_id "RvY_06373.1"; Scaffold002 rebuild exon 8836610 8837176 . + . gene_id "RvY_06373"; transcript_id "RvY_06373.1"; Scaffold002 rebuild transcript 8837229 8838084 . + . gene_id "RvY_06374"; transcript_id "RvY_06374.1"; annotation "putative Sodium- and chloride-dependent taurine transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A6_MOUSE(e-value:2.7e-30;bit-score:130.0)"; Scaffold002 rebuild exon 8837229 8837357 . + . gene_id "RvY_06374"; transcript_id "RvY_06374.1"; Scaffold002 rebuild exon 8837433 8837636 . + . gene_id "RvY_06374"; transcript_id "RvY_06374.1"; Scaffold002 rebuild exon 8837737 8837880 . + . gene_id "RvY_06374"; transcript_id "RvY_06374.1"; Scaffold002 rebuild exon 8837968 8838084 . + . gene_id "RvY_06374"; transcript_id "RvY_06374.1"; Scaffold002 rebuild transcript 8838620 8840239 . - . gene_id "RvY_06375"; transcript_id "RvY_06375.1"; gene_name "tspO"; annotation "tryptophan-rich sensory protein"; Pfam "[TspO_MBR] TspO/MBR family"; KO "K07185"; Scaffold002 rebuild exon 8838620 8838775 . - . gene_id "RvY_06375"; transcript_id "RvY_06375.1"; Scaffold002 rebuild exon 8838845 8839051 . - . gene_id "RvY_06375"; transcript_id "RvY_06375.1"; Scaffold002 rebuild exon 8840037 8840109 . - . gene_id "RvY_06375"; transcript_id "RvY_06375.1"; Scaffold002 rebuild exon 8840184 8840239 . - . gene_id "RvY_06375"; transcript_id "RvY_06375.1"; Scaffold002 rebuild transcript 8840820 8841119 . + . gene_id "RvY_06376"; transcript_id "RvY_06376.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8840820 8841119 . + . gene_id "RvY_06376"; transcript_id "RvY_06376.1"; Scaffold002 rebuild transcript 8841516 8842428 . - . gene_id "RvY_06377"; transcript_id "RvY_06377.1"; annotation "hypothetical protein."; Pfam "[Zip] ZIP Zinc transporter"; Scaffold002 rebuild exon 8841516 8841528 . - . gene_id "RvY_06377"; transcript_id "RvY_06377.1"; Scaffold002 rebuild exon 8841596 8842428 . - . gene_id "RvY_06377"; transcript_id "RvY_06377.1"; Scaffold002 rebuild transcript 8841592 8842428 . - . gene_id "RvY_06377"; transcript_id "RvY_06377.2"; annotation "hypothetical protein."; Pfam "[Zip] ZIP Zinc transporter"; Scaffold002 rebuild exon 8841592 8842428 . - . gene_id "RvY_06377"; transcript_id "RvY_06377.2"; Scaffold002 rebuild transcript 8844244 8844584 . + . gene_id "RvY_06378"; transcript_id "RvY_06378.1"; gene_name "GST_N_Mu"; annotation "hypothetical protein."; Pfam "[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold002 rebuild exon 8844244 8844271 . + . gene_id "RvY_06378"; transcript_id "RvY_06378.1"; Scaffold002 rebuild exon 8844322 8844584 . + . gene_id "RvY_06378"; transcript_id "RvY_06378.1"; Scaffold002 rebuild transcript 8844589 8844992 . + . gene_id "RvY_06379"; transcript_id "RvY_06379.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8844589 8844681 . + . gene_id "RvY_06379"; transcript_id "RvY_06379.1"; Scaffold002 rebuild exon 8844900 8844992 . + . gene_id "RvY_06379"; transcript_id "RvY_06379.1"; Scaffold002 rebuild transcript 8845982 8846644 . + . gene_id "RvY_06380"; transcript_id "RvY_06380.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8845982 8846644 . + . gene_id "RvY_06380"; transcript_id "RvY_06380.1"; Scaffold002 rebuild transcript 8848755 8854233 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; annotation "putative Dorsal root ganglia homeobox protein"; Pfam "[OAR]|[Homeobox]"; similar_genes "DRGX_HUMAN(e-value:1.4e-29;bit-score:127.0)"; Scaffold002 rebuild exon 8848755 8848770 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; Scaffold002 rebuild exon 8850954 8851184 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; Scaffold002 rebuild exon 8852172 8852368 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; Scaffold002 rebuild exon 8852461 8852786 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; Scaffold002 rebuild exon 8853665 8853923 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; Scaffold002 rebuild exon 8853985 8854233 . + . gene_id "RvY_06381"; transcript_id "RvY_06381.1"; Scaffold002 rebuild transcript 8854695 8855741 . - . gene_id "RvY_06382"; transcript_id "RvY_06382.1"; gene_name "RING"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)"; Scaffold002 rebuild exon 8854695 8854885 . - . gene_id "RvY_06382"; transcript_id "RvY_06382.1"; Scaffold002 rebuild exon 8855245 8855431 . - . gene_id "RvY_06382"; transcript_id "RvY_06382.1"; Scaffold002 rebuild exon 8855497 8855586 . - . gene_id "RvY_06382"; transcript_id "RvY_06382.1"; Scaffold002 rebuild exon 8855646 8855741 . - . gene_id "RvY_06382"; transcript_id "RvY_06382.1"; Scaffold002 rebuild transcript 8857083 8860239 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; gene_name "PRK12678"; annotation "hypothetical protein."; CDD "transcription termination factor Rho; Provisional"; similar_genes "GRP1_PETHY(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 8857083 8857275 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8857436 8857564 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8857829 8857885 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8858017 8858043 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8858154 8858189 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8858372 8858413 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8858545 8859069 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8859294 8859347 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8859608 8859649 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8859761 8859880 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8859951 8860148 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild exon 8860208 8860239 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.1"; Scaffold002 rebuild transcript 8857083 8860239 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; gene_name "PRK12678"; annotation "hypothetical protein."; CDD "transcription termination factor Rho; Provisional"; similar_genes "GRP1_PETHY(e-value:2.4e-12;bit-score:70.0)"; Scaffold002 rebuild exon 8857083 8857275 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8857436 8857558 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8857829 8857885 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8858017 8858043 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8858154 8858189 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8858372 8858413 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8858545 8859069 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8859294 8859347 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8859608 8859649 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8859761 8859880 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8859951 8860148 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild exon 8860208 8860239 . + . gene_id "RvY_06383"; transcript_id "RvY_06383.2"; Scaffold002 rebuild transcript 8860466 8861383 . - . gene_id "RvY_06384"; transcript_id "RvY_06384.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8860466 8860531 . - . gene_id "RvY_06384"; transcript_id "RvY_06384.1"; Scaffold002 rebuild exon 8861087 8861383 . - . gene_id "RvY_06384"; transcript_id "RvY_06384.1"; Scaffold002 rebuild transcript 8862481 8864271 . + . gene_id "RvY_06385"; transcript_id "RvY_06385.1"; gene_name "rplI"; annotation "hypothetical protein."; Pfam "[Ribosomal_L9_N] Ribosomal protein L9, N-terminal domain"; CDD "50S ribosomal protein L9; Reviewed"; Scaffold002 rebuild exon 8862481 8862588 . + . gene_id "RvY_06385"; transcript_id "RvY_06385.1"; Scaffold002 rebuild exon 8862664 8862826 . + . gene_id "RvY_06385"; transcript_id "RvY_06385.1"; Scaffold002 rebuild exon 8862897 8863021 . + . gene_id "RvY_06385"; transcript_id "RvY_06385.1"; Scaffold002 rebuild exon 8863705 8863959 . + . gene_id "RvY_06385"; transcript_id "RvY_06385.1"; Scaffold002 rebuild exon 8864044 8864271 . + . gene_id "RvY_06385"; transcript_id "RvY_06385.1"; Scaffold002 rebuild transcript 8864556 8867377 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; gene_name "ACSL"; annotation "putative Long-chain-fatty-acid--CoA ligase 6"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]"; EC "EC6.2.1.3"; KO "K01897"; similar_genes "ACSL6_HUMAN(e-value:4.0e-46;bit-score:182.0)"; Scaffold002 rebuild exon 8864556 8865011 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8865078 8865356 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8865508 8865951 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8866051 8866209 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8866279 8866451 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8866547 8866822 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8867005 8867119 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild exon 8867213 8867377 . - . gene_id "RvY_06386"; transcript_id "RvY_06386.1"; Scaffold002 rebuild transcript 8868976 8869191 . - . gene_id "RvY_06387"; transcript_id "RvY_06387.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8868976 8869191 . - . gene_id "RvY_06387"; transcript_id "RvY_06387.1"; Scaffold002 rebuild transcript 8870791 8871012 . - . gene_id "RvY_06388"; transcript_id "RvY_06388.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8870791 8871012 . - . gene_id "RvY_06388"; transcript_id "RvY_06388.1"; Scaffold002 rebuild transcript 8872176 8873046 . + . gene_id "RvY_06389"; transcript_id "RvY_06389.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8872176 8872322 . + . gene_id "RvY_06389"; transcript_id "RvY_06389.1"; Scaffold002 rebuild exon 8872484 8872696 . + . gene_id "RvY_06389"; transcript_id "RvY_06389.1"; Scaffold002 rebuild exon 8872930 8873046 . + . gene_id "RvY_06389"; transcript_id "RvY_06389.1"; Scaffold002 rebuild transcript 8873984 8875669 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)"; Scaffold002 rebuild exon 8873984 8874065 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8874156 8874250 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8874322 8874489 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8874571 8874593 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8874720 8874776 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8874852 8875099 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8875163 8875490 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild exon 8875552 8875669 . + . gene_id "RvY_06390"; transcript_id "RvY_06390.1"; Scaffold002 rebuild transcript 8876168 8879662 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; gene_name "EDEM3"; annotation "putative ER degradation-enhancing alpha-mannosidase-like 3"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47|[PA]"; KO "K10086"; similar_genes "EDEM3_MOUSE(e-value:5.6e-37;bit-score:152.0)"; Scaffold002 rebuild exon 8876168 8876469 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild exon 8876552 8876870 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild exon 8877106 8877426 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild exon 8877625 8878053 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild exon 8878240 8878655 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild exon 8878725 8879187 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild exon 8879447 8879662 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.1"; Scaffold002 rebuild transcript 8876168 8879662 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; gene_name "EDEM3"; annotation "putative ER degradation-enhancing alpha-mannosidase-like 3"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47|[PA]"; KO "K10086"; similar_genes "EDEM3_MOUSE(e-value:5.6e-37;bit-score:152.0)"; Scaffold002 rebuild exon 8876168 8876469 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild exon 8876552 8876870 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild exon 8877160 8877426 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild exon 8877625 8878053 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild exon 8878240 8878655 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild exon 8878725 8879187 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild exon 8879447 8879662 . - . gene_id "RvY_06391"; transcript_id "RvY_06391.2"; Scaffold002 rebuild transcript 8880464 8885258 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; gene_name "ATP2B"; annotation "Plasma membrane calcium-transporting ATPase 1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; KO "K05850"; similar_genes "AT2B1_RAT(e-value:2.0e-77;bit-score:286.0)"; Scaffold002 rebuild exon 8880464 8880698 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8880778 8880969 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8881169 8881393 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8881541 8881666 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8881951 8882274 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8882348 8882550 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8882619 8882754 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8882942 8883447 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8883503 8883760 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8883823 8884003 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8884072 8884277 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8884346 8884559 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8884616 8884833 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild exon 8885076 8885258 . + . gene_id "RvY_06392"; transcript_id "RvY_06392.1"; Scaffold002 rebuild transcript 8886936 8889891 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; gene_name "ATPase-IIB_Ca"; annotation "Plasma membrane calcium-transporting ATPase 1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1)[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; similar_genes "AT2B1_RAT(e-value:1.1e-82;bit-score:304.0)"; Scaffold002 rebuild exon 8886936 8887251 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8887339 8887541 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8887747 8888388 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8888454 8888711 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8888787 8888967 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8889036 8889241 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8889310 8889523 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild exon 8889623 8889891 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.1"; Scaffold002 rebuild transcript 8887750 8890074 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; gene_name "ATPase-IIB_Ca"; annotation "Plasma membrane calcium-transporting ATPase 1"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1)[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; similar_genes "AT2B1_RAT(e-value:1.1e-82;bit-score:304.0)"; Scaffold002 rebuild exon 8887750 8888388 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild exon 8888454 8888711 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild exon 8888787 8888967 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild exon 8889036 8889241 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild exon 8889310 8889523 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild exon 8889623 8889840 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild exon 8889910 8890074 . + . gene_id "RvY_06393"; transcript_id "RvY_06393.2"; Scaffold002 rebuild transcript 8890656 8890813 . - . gene_id "RvY_06394"; transcript_id "RvY_06394.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8890656 8890667 . - . gene_id "RvY_06394"; transcript_id "RvY_06394.1"; Scaffold002 rebuild exon 8890697 8890813 . - . gene_id "RvY_06394"; transcript_id "RvY_06394.1"; Scaffold002 rebuild transcript 8891625 8892819 . - . gene_id "RvY_06395"; transcript_id "RvY_06395.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold002 rebuild exon 8891625 8891857 . - . gene_id "RvY_06395"; transcript_id "RvY_06395.1"; Scaffold002 rebuild exon 8891940 8892051 . - . gene_id "RvY_06395"; transcript_id "RvY_06395.1"; Scaffold002 rebuild exon 8892237 8892321 . - . gene_id "RvY_06395"; transcript_id "RvY_06395.1"; Scaffold002 rebuild exon 8892410 8892819 . - . gene_id "RvY_06395"; transcript_id "RvY_06395.1"; Scaffold002 rebuild transcript 8896515 8898570 . - . gene_id "RvY_06396"; transcript_id "RvY_06396.1"; gene_name "UBQLN"; annotation "putative Ubiquilin-4"; Pfam "[ubiquitin] Ubiquitin family|[UBA] UBA/TS-N domain"; CDD "hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein."; KO "K04523"; similar_genes "UBQL4_HUMAN(e-value:1.9e-35;bit-score:147.0)"; Scaffold002 rebuild exon 8896515 8897062 . - . gene_id "RvY_06396"; transcript_id "RvY_06396.1"; Scaffold002 rebuild exon 8897125 8897434 . - . gene_id "RvY_06396"; transcript_id "RvY_06396.1"; Scaffold002 rebuild exon 8897764 8898002 . - . gene_id "RvY_06396"; transcript_id "RvY_06396.1"; Scaffold002 rebuild exon 8898071 8898293 . - . gene_id "RvY_06396"; transcript_id "RvY_06396.1"; Scaffold002 rebuild exon 8898388 8898570 . - . gene_id "RvY_06396"; transcript_id "RvY_06396.1"; Scaffold002 rebuild transcript 8897415 8897567 . + . gene_id "RvY_06397"; transcript_id "RvY_06397.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8897415 8897567 . + . gene_id "RvY_06397"; transcript_id "RvY_06397.1"; Scaffold002 rebuild transcript 8900514 8904879 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; gene_name "PLD"; annotation "putative Phospholipase D1"; Pfam "[PLDc] Phospholipase D Active site motif|[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membranes while PLD2 is associated with plasma membranes. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction."; EC "EC3.1.4.4"; KO "K01115"; similar_genes "PLD1_MOUSE(e-value:2.7e-49;bit-score:193.0)"; Scaffold002 rebuild exon 8900514 8900554 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8900620 8900638 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8900705 8901103 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8901166 8901284 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8901370 8901450 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8901530 8901603 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8901675 8901745 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8901816 8902379 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8902463 8902494 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8902620 8902664 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8902786 8902850 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8902931 8902974 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8903036 8903146 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8903230 8903465 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8903526 8903758 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8903815 8904038 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8904111 8904204 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8904274 8904402 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8904472 8904511 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8904601 8904702 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild exon 8904792 8904879 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.1"; Scaffold002 rebuild transcript 8900582 8904879 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; gene_name "PLD"; annotation "putative Phospholipase D1"; Pfam "[PLDc] Phospholipase D Active site motif|[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membranes while PLD2 is associated with plasma membranes. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction."; EC "EC3.1.4.4"; KO "K01115"; similar_genes "PLD1_MOUSE(e-value:2.7e-49;bit-score:193.0)"; Scaffold002 rebuild exon 8900582 8900638 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8900705 8901103 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8901166 8901284 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8901370 8901450 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8901530 8901603 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8901675 8901745 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8901816 8902379 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8902463 8902494 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8902620 8902664 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8902786 8902850 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8902931 8902974 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8903036 8903146 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8903230 8903465 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8903526 8903758 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8903815 8904038 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8904111 8904204 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8904274 8904402 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8904472 8904511 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8904601 8904702 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild exon 8904792 8904879 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.2"; Scaffold002 rebuild transcript 8901783 8904879 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; gene_name "PLD"; annotation "putative Phospholipase D1"; Pfam "[PLDc] Phospholipase D Active site motif|[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membranes while PLD2 is associated with plasma membranes. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction."; EC "EC3.1.4.4"; KO "K01115"; similar_genes "PLD1_MOUSE(e-value:2.7e-49;bit-score:193.0)"; Scaffold002 rebuild exon 8901783 8902379 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8902463 8902494 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8902620 8902664 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8902786 8902850 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8902931 8902974 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8903036 8903146 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8903230 8903465 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8903526 8903758 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8903815 8904038 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8904111 8904204 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8904274 8904402 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8904472 8904511 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8904601 8904702 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild exon 8904792 8904879 . - . gene_id "RvY_06398"; transcript_id "RvY_06398.3"; Scaffold002 rebuild transcript 8906060 8908294 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; gene_name "ERK1_2"; annotation "Mitogen-activated protein kinase ERK-A"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion."; EC "EC2.7.11.24"; KO "K04371"; similar_genes "ERKA_DROME(e-value:1.4e-156;bit-score:549.0)"; Scaffold002 rebuild exon 8906060 8906692 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8906954 8907086 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8907168 8907239 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8907305 8907384 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8907460 8907515 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8907597 8907619 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8907992 8908101 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild exon 8908160 8908294 . + . gene_id "RvY_06399"; transcript_id "RvY_06399.1"; Scaffold002 rebuild transcript 8911016 8911219 . + . gene_id "RvY_06400"; transcript_id "RvY_06400.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8911016 8911219 . + . gene_id "RvY_06400"; transcript_id "RvY_06400.1"; Scaffold002 rebuild transcript 8911428 8912494 . + . gene_id "RvY_06401"; transcript_id "RvY_06401.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "ADA2A_DANRE(e-value:8.0e-13;bit-score:72.0)"; Scaffold002 rebuild exon 8911428 8911709 . + . gene_id "RvY_06401"; transcript_id "RvY_06401.1"; Scaffold002 rebuild exon 8912342 8912494 . + . gene_id "RvY_06401"; transcript_id "RvY_06401.1"; Scaffold002 rebuild transcript 8915444 8915839 . - . gene_id "RvY_06402"; transcript_id "RvY_06402.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8915444 8915839 . - . gene_id "RvY_06402"; transcript_id "RvY_06402.1"; Scaffold002 rebuild transcript 8915367 8915684 . - . gene_id "RvY_06402"; transcript_id "RvY_06402.2"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8915367 8915684 . - . gene_id "RvY_06402"; transcript_id "RvY_06402.2"; Scaffold002 rebuild transcript 8915683 8916642 . + . gene_id "RvY_06403"; transcript_id "RvY_06403.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "OAR1_LOCMI(e-value:2.6e-07;bit-score:53.0)"; Scaffold002 rebuild exon 8915683 8915812 . + . gene_id "RvY_06403"; transcript_id "RvY_06403.1"; Scaffold002 rebuild exon 8916052 8916309 . + . gene_id "RvY_06403"; transcript_id "RvY_06403.1"; Scaffold002 rebuild exon 8916382 8916516 . + . gene_id "RvY_06403"; transcript_id "RvY_06403.1"; Scaffold002 rebuild exon 8916617 8916642 . + . gene_id "RvY_06403"; transcript_id "RvY_06403.1"; Scaffold002 rebuild transcript 8917580 8919055 . + . gene_id "RvY_06404"; transcript_id "RvY_06404.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "SER2_CAEEL(e-value:4.0e-10;bit-score:63.0)"; Scaffold002 rebuild exon 8917580 8918501 . + . gene_id "RvY_06404"; transcript_id "RvY_06404.1"; Scaffold002 rebuild exon 8918617 8918729 . + . gene_id "RvY_06404"; transcript_id "RvY_06404.1"; Scaffold002 rebuild exon 8918804 8918886 . + . gene_id "RvY_06404"; transcript_id "RvY_06404.1"; Scaffold002 rebuild exon 8918968 8919055 . + . gene_id "RvY_06404"; transcript_id "RvY_06404.1"; Scaffold002 rebuild transcript 8919733 8933321 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; gene_name "MRS6"; annotation "hypothetical protein."; Pfam "[Chorein_N] N-terminal region of Chorein, a TM vesicle-mediated sorter|[DUF1162]"; CDD "Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]"; similar_genes "VP13C_HUMAN(e-value:6.6e-23;bit-score:105.0)"; Scaffold002 rebuild exon 8919733 8919926 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8920005 8920358 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8920421 8920479 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8920552 8920732 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8920794 8920931 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8921004 8921191 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8921265 8921583 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8921650 8921793 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8921870 8921939 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8921997 8922103 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8922169 8922380 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8922445 8922977 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8923088 8923198 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8923261 8923391 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8923534 8923729 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8923793 8924125 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8924193 8924966 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8925044 8925123 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8925205 8925442 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8925512 8926069 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8926253 8926578 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8926816 8926975 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8927047 8927424 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8927485 8927716 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8927780 8927950 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8928012 8928681 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8928855 8929542 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8929609 8929931 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8930005 8930251 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8930330 8930659 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8930740 8931229 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8931300 8931514 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8931575 8932281 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8932350 8932460 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8932555 8932650 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8933035 8933121 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild exon 8933222 8933321 . - . gene_id "RvY_06405"; transcript_id "RvY_06405.1"; Scaffold002 rebuild transcript 8937584 8938427 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; gene_name "(1,2)PIN4"; annotation "(1)putative Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4(2)peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [EC:5.2.1.8](3)hypothetical protein."; Pfam "[Rotamase_3] PPIC-type PPIASE domain|[Rotamase] PPIC-type PPIASE domain|(1)[Rotamase_2] PPIC-type PPIASE domain"; EC "(1,2)EC5.2.1.8"; KO "(1,2)K09579"; similar_genes "(1)PIN4_DANRE(e-value:2.3e-46;bit-score:183.0)(2)PIN4_DANRE(e-value:4.4e-24;bit-score:109.0)"; Scaffold002 rebuild exon 8937584 8937697 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; Scaffold002 rebuild exon 8937804 8937923 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; Scaffold002 rebuild exon 8937993 8938017 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; Scaffold002 rebuild exon 8938117 8938124 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; Scaffold002 rebuild exon 8938200 8938229 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; Scaffold002 rebuild exon 8938332 8938427 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.1"; Scaffold002 rebuild transcript 8937584 8938052 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.2"; gene_name "(1,2)PIN4"; annotation "(1)putative Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4(2)peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [EC:5.2.1.8](3)hypothetical protein."; Pfam "[Rotamase_3] PPIC-type PPIASE domain|[Rotamase] PPIC-type PPIASE domain|(1)[Rotamase_2] PPIC-type PPIASE domain"; EC "(1,2)EC5.2.1.8"; KO "(1,2)K09579"; similar_genes "(1)PIN4_DANRE(e-value:2.3e-46;bit-score:183.0)(2)PIN4_DANRE(e-value:4.4e-24;bit-score:109.0)"; Scaffold002 rebuild exon 8937584 8937697 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.2"; Scaffold002 rebuild exon 8937804 8937923 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.2"; Scaffold002 rebuild exon 8937993 8938052 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.2"; Scaffold002 rebuild transcript 8937549 8937861 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.3"; gene_name "(1,2)PIN4"; annotation "(1)putative Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4(2)peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [EC:5.2.1.8](3)hypothetical protein."; Pfam "[Rotamase_3] PPIC-type PPIASE domain|[Rotamase] PPIC-type PPIASE domain|(1)[Rotamase_2] PPIC-type PPIASE domain"; EC "(1,2)EC5.2.1.8"; KO "(1,2)K09579"; similar_genes "(1)PIN4_DANRE(e-value:2.3e-46;bit-score:183.0)(2)PIN4_DANRE(e-value:4.4e-24;bit-score:109.0)"; Scaffold002 rebuild exon 8937549 8937697 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.3"; Scaffold002 rebuild exon 8937804 8937861 . + . gene_id "RvY_06406"; transcript_id "RvY_06406.3"; Scaffold002 rebuild transcript 8938854 8941814 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; gene_name "CNOT4"; annotation "putative CCR4-NOT transcription complex subunit 4"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "Transcriptional repressor [Transcription]"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10643"; similar_genes "CNOT4_HUMAN(e-value:2.1e-32;bit-score:137.0)"; Scaffold002 rebuild exon 8938854 8939129 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8939210 8939616 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8939712 8939929 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8939998 8940230 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8940310 8940474 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8940538 8940682 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8940798 8940914 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8941128 8941174 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8941238 8941303 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8941617 8941685 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild exon 8941767 8941814 . - . gene_id "RvY_06407"; transcript_id "RvY_06407.1"; Scaffold002 rebuild transcript 8943001 8948690 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; gene_name "K01530"; annotation "putative Probable phospholipid-transporting ATPase IF"; Pfam "[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes."; EC "EC3.6.3.1"; KO "K01530"; similar_genes "AT11B_HUMAN(e-value:8.7e-42;bit-score:168.0)"; Scaffold002 rebuild exon 8943001 8943033 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8943111 8943221 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8943617 8943706 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8943844 8944032 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8944100 8944178 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8944246 8944295 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8944502 8944605 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8944693 8945068 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8945141 8945338 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8945417 8945444 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8945514 8945644 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8945746 8946129 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8946199 8946609 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8946845 8947315 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8947383 8947471 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8947680 8947778 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8947847 8948057 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild exon 8948268 8948690 . + . gene_id "RvY_06408"; transcript_id "RvY_06408.1"; Scaffold002 rebuild transcript 8949837 8957589 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; annotation "AT-rich interactive domain-containing protein 3A"; Pfam "[ARID] ARID/BRIGHT DNA binding domain"; similar_genes "ARI3A_DANRE(e-value:1.2e-60;bit-score:231.0)"; Scaffold002 rebuild exon 8949837 8950312 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; Scaffold002 rebuild exon 8950385 8950761 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; Scaffold002 rebuild exon 8950839 8951022 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; Scaffold002 rebuild exon 8951548 8951620 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; Scaffold002 rebuild exon 8956719 8957402 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; Scaffold002 rebuild exon 8957545 8957589 . - . gene_id "RvY_06409"; transcript_id "RvY_06409.1"; Scaffold002 rebuild transcript 8960395 8964147 . - . gene_id "RvY_06410"; transcript_id "RvY_06410.1"; gene_name "XRN2"; annotation "5'-3' exoribonuclease 2"; Pfam "[XRN_N] XRN 5'-3' exonuclease N-terminus"; CDD "5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation]"; EC "EC3.1.13.-"; KO "K12619"; similar_genes "XRN2_MOUSE(e-value:5.9e-60;bit-score:228.0)"; Scaffold002 rebuild exon 8960395 8961420 . - . gene_id "RvY_06410"; transcript_id "RvY_06410.1"; Scaffold002 rebuild exon 8961485 8961865 . - . gene_id "RvY_06410"; transcript_id "RvY_06410.1"; Scaffold002 rebuild exon 8962142 8963105 . - . gene_id "RvY_06410"; transcript_id "RvY_06410.1"; Scaffold002 rebuild exon 8963174 8963493 . - . gene_id "RvY_06410"; transcript_id "RvY_06410.1"; Scaffold002 rebuild exon 8963710 8964147 . - . gene_id "RvY_06410"; transcript_id "RvY_06410.1"; Scaffold002 rebuild transcript 8965002 8965718 . + . gene_id "RvY_06411"; transcript_id "RvY_06411.1"; gene_name "katE"; annotation "hypothetical protein."; Pfam "[Catalase]"; CDD "hydroperoxidase II; Provisional"; EC "EC1.11.1.6"; similar_genes "CATE_PSEPU(e-value:2.3e-08;bit-score:57.0)"; Scaffold002 rebuild exon 8965002 8965123 . + . gene_id "RvY_06411"; transcript_id "RvY_06411.1"; Scaffold002 rebuild exon 8965236 8965618 . + . gene_id "RvY_06411"; transcript_id "RvY_06411.1"; Scaffold002 rebuild exon 8965666 8965718 . + . gene_id "RvY_06411"; transcript_id "RvY_06411.1"; Scaffold002 rebuild transcript 8967230 8967695 . + . gene_id "RvY_06412"; transcript_id "RvY_06412.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8967230 8967320 . + . gene_id "RvY_06412"; transcript_id "RvY_06412.1"; Scaffold002 rebuild exon 8967580 8967695 . + . gene_id "RvY_06412"; transcript_id "RvY_06412.1"; Scaffold002 rebuild transcript 8967816 8968611 . + . gene_id "RvY_06413"; transcript_id "RvY_06413.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8967816 8967965 . + . gene_id "RvY_06413"; transcript_id "RvY_06413.1"; Scaffold002 rebuild exon 8968148 8968424 . + . gene_id "RvY_06413"; transcript_id "RvY_06413.1"; Scaffold002 rebuild exon 8968454 8968611 . + . gene_id "RvY_06413"; transcript_id "RvY_06413.1"; Scaffold002 rebuild transcript 8969040 8969363 . + . gene_id "RvY_06414"; transcript_id "RvY_06414.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8969040 8969363 . + . gene_id "RvY_06414"; transcript_id "RvY_06414.1"; Scaffold002 rebuild transcript 8970390 8971856 . - . gene_id "RvY_06415"; transcript_id "RvY_06415.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8970390 8971856 . - . gene_id "RvY_06415"; transcript_id "RvY_06415.1"; Scaffold002 rebuild transcript 8972372 8973338 . - . gene_id "RvY_06416"; transcript_id "RvY_06416.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8972372 8972859 . - . gene_id "RvY_06416"; transcript_id "RvY_06416.1"; Scaffold002 rebuild exon 8973008 8973338 . - . gene_id "RvY_06416"; transcript_id "RvY_06416.1"; Scaffold002 rebuild transcript 8974505 8982059 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; annotation "hypothetical protein."; Pfam "[Big_2] Bacterial Ig-like domain (group 2)"; KO "K14314"; Scaffold002 rebuild exon 8974505 8975253 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8975523 8976126 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8976256 8976345 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8976426 8976513 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8976586 8976770 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8976847 8977180 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8977275 8977741 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8977813 8978384 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8978587 8978943 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8979157 8979438 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8979530 8979871 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8979933 8980266 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8980341 8980627 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8980726 8980951 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8981058 8981692 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild exon 8981852 8982059 . - . gene_id "RvY_06417"; transcript_id "RvY_06417.1"; Scaffold002 rebuild transcript 8983419 8985716 . + . gene_id "RvY_06418"; transcript_id "RvY_06418.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold002 rebuild exon 8983419 8983456 . + . gene_id "RvY_06418"; transcript_id "RvY_06418.1"; Scaffold002 rebuild exon 8983973 8984416 . + . gene_id "RvY_06418"; transcript_id "RvY_06418.1"; Scaffold002 rebuild exon 8984488 8984855 . + . gene_id "RvY_06418"; transcript_id "RvY_06418.1"; Scaffold002 rebuild exon 8985217 8985716 . + . gene_id "RvY_06418"; transcript_id "RvY_06418.1"; Scaffold002 rebuild transcript 8986421 8987101 . + . gene_id "RvY_06419"; transcript_id "RvY_06419.1"; gene_name "DSPc"; annotation "hypothetical protein."; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatase, catalytic domain."; KO "K14165"; Scaffold002 rebuild exon 8986421 8986651 . + . gene_id "RvY_06419"; transcript_id "RvY_06419.1"; Scaffold002 rebuild exon 8986715 8987101 . + . gene_id "RvY_06419"; transcript_id "RvY_06419.1"; Scaffold002 rebuild transcript 8988065 8989301 . + . gene_id "RvY_06420"; transcript_id "RvY_06420.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold002 rebuild exon 8988065 8988341 . + . gene_id "RvY_06420"; transcript_id "RvY_06420.1"; Scaffold002 rebuild exon 8988466 8989301 . + . gene_id "RvY_06420"; transcript_id "RvY_06420.1"; Scaffold002 rebuild transcript 8989919 8990083 . + . gene_id "RvY_06421"; transcript_id "RvY_06421.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 8989919 8990083 . + . gene_id "RvY_06421"; transcript_id "RvY_06421.1"; Scaffold002 rebuild transcript 8991988 8993593 . + . gene_id "RvY_06422"; transcript_id "RvY_06422.1"; annotation "hypothetical protein."; Pfam "[ACBP] Acyl CoA binding protein"; Scaffold002 rebuild exon 8991988 8992117 . + . gene_id "RvY_06422"; transcript_id "RvY_06422.1"; Scaffold002 rebuild exon 8992318 8992438 . + . gene_id "RvY_06422"; transcript_id "RvY_06422.1"; Scaffold002 rebuild exon 8992500 8992572 . + . gene_id "RvY_06422"; transcript_id "RvY_06422.1"; Scaffold002 rebuild exon 8992658 8993593 . + . gene_id "RvY_06422"; transcript_id "RvY_06422.1"; Scaffold002 rebuild transcript 8994457 8999292 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; gene_name "ADAM10"; annotation "putative Disintegrin and metalloproteinase domain-containing protein 10"; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Pep_M12B_propep] Reprolysin family propeptide|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha."; EC "EC3.4.24.81"; KO "K06704"; similar_genes "ADA10_HUMAN(e-value:1.2e-28;bit-score:124.0)"; Scaffold002 rebuild exon 8994457 8994682 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8994753 8994988 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8995054 8995227 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8995291 8995361 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8995449 8995493 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8995571 8995727 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8995814 8995930 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8996206 8996579 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8996647 8996830 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8996945 8997129 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8997276 8997462 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8997528 8998071 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8998227 8998448 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8998523 8998715 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild exon 8999103 8999292 . - . gene_id "RvY_06423"; transcript_id "RvY_06423.1"; Scaffold002 rebuild transcript 9001192 9001880 . + . gene_id "RvY_06424"; transcript_id "RvY_06424.1"; annotation "hypothetical protein."; Pfam "[BCS1_N] BCS1 N terminal"; similar_genes "BCS1_XENLA(e-value:1.1e-20;bit-score:98.0)"; Scaffold002 rebuild exon 9001192 9001655 . + . gene_id "RvY_06424"; transcript_id "RvY_06424.1"; Scaffold002 rebuild exon 9001724 9001880 . + . gene_id "RvY_06424"; transcript_id "RvY_06424.1"; Scaffold002 rebuild transcript 9001908 9003097 . + . gene_id "RvY_06425"; transcript_id "RvY_06425.1"; gene_name "BCS1"; annotation "Mitochondrial chaperone BCS1"; Pfam "[BCS1_N] BCS1 N terminal|[AAA] ATPase family associated with various cellular activities (AAA)"; KO "K08900"; similar_genes "BCS1_XENLA(e-value:2.8e-104;bit-score:375.0)"; Scaffold002 rebuild exon 9001908 9002143 . + . gene_id "RvY_06425"; transcript_id "RvY_06425.1"; Scaffold002 rebuild exon 9002234 9002366 . + . gene_id "RvY_06425"; transcript_id "RvY_06425.1"; Scaffold002 rebuild exon 9002435 9002516 . + . gene_id "RvY_06425"; transcript_id "RvY_06425.1"; Scaffold002 rebuild exon 9002596 9002713 . + . gene_id "RvY_06425"; transcript_id "RvY_06425.1"; Scaffold002 rebuild exon 9002791 9003097 . + . gene_id "RvY_06425"; transcript_id "RvY_06425.1"; Scaffold002 rebuild transcript 9003417 9012226 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; gene_name "STXBP5"; annotation "putative Syntaxin-binding protein 5"; Pfam "[LLGL] LLGL2|[Synaptobrevin]"; KO "K08518"; similar_genes "STXB5_HUMAN(e-value:2.2e-36;bit-score:150.0)"; Scaffold002 rebuild exon 9003417 9003554 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9003649 9003767 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9003843 9004033 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9004107 9004202 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9004304 9004412 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9004479 9004703 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9004777 9004944 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9005000 9005170 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9005243 9005353 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9006016 9006100 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9006218 9006386 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9006560 9006882 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9006979 9007292 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9007453 9007493 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9007582 9007649 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9007720 9007867 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9008396 9008468 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9008547 9008758 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9008858 9008924 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9009028 9009154 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9009244 9009327 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9009405 9009468 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9009662 9009796 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9009862 9009965 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9010037 9010193 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9011792 9011889 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9012020 9012119 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild exon 9012186 9012226 . - . gene_id "RvY_06426"; transcript_id "RvY_06426.1"; Scaffold002 rebuild transcript 9012525 9012740 . + . gene_id "RvY_06427"; transcript_id "RvY_06427.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9012525 9012740 . + . gene_id "RvY_06427"; transcript_id "RvY_06427.1"; Scaffold002 rebuild transcript 9014816 9017294 . - . gene_id "RvY_06428"; transcript_id "RvY_06428.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9014816 9015257 . - . gene_id "RvY_06428"; transcript_id "RvY_06428.1"; Scaffold002 rebuild exon 9017083 9017201 . - . gene_id "RvY_06428"; transcript_id "RvY_06428.1"; Scaffold002 rebuild exon 9017238 9017294 . - . gene_id "RvY_06428"; transcript_id "RvY_06428.1"; Scaffold002 rebuild transcript 9017528 9017746 . + . gene_id "RvY_06429"; transcript_id "RvY_06429.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9017528 9017746 . + . gene_id "RvY_06429"; transcript_id "RvY_06429.1"; Scaffold002 rebuild transcript 9017881 9018777 . - . gene_id "RvY_06430"; transcript_id "RvY_06430.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold002 rebuild exon 9017881 9017958 . - . gene_id "RvY_06430"; transcript_id "RvY_06430.1"; Scaffold002 rebuild exon 9018400 9018777 . - . gene_id "RvY_06430"; transcript_id "RvY_06430.1"; Scaffold002 rebuild transcript 9019267 9020757 . + . gene_id "RvY_06431"; transcript_id "RvY_06431.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9019267 9020757 . + . gene_id "RvY_06431"; transcript_id "RvY_06431.1"; Scaffold002 rebuild transcript 9020936 9021259 . + . gene_id "RvY_06432"; transcript_id "RvY_06432.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9020936 9021259 . + . gene_id "RvY_06432"; transcript_id "RvY_06432.1"; Scaffold002 rebuild transcript 9022192 9022440 . + . gene_id "RvY_06433"; transcript_id "RvY_06433.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9022192 9022440 . + . gene_id "RvY_06433"; transcript_id "RvY_06433.1"; Scaffold002 rebuild transcript 9023222 9023877 . + . gene_id "RvY_06434"; transcript_id "RvY_06434.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9023222 9023675 . + . gene_id "RvY_06434"; transcript_id "RvY_06434.1"; Scaffold002 rebuild exon 9023744 9023877 . + . gene_id "RvY_06434"; transcript_id "RvY_06434.1"; Scaffold002 rebuild transcript 9024224 9025027 . + . gene_id "RvY_06435"; transcript_id "RvY_06435.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9024224 9024359 . + . gene_id "RvY_06435"; transcript_id "RvY_06435.1"; Scaffold002 rebuild exon 9024531 9025027 . + . gene_id "RvY_06435"; transcript_id "RvY_06435.1"; Scaffold002 rebuild transcript 9025033 9025625 . - . gene_id "RvY_06436"; transcript_id "RvY_06436.1"; annotation "hypothetical protein."; Scaffold002 rebuild exon 9025033 9025433 . - . gene_id "RvY_06436"; transcript_id "RvY_06436.1"; Scaffold002 rebuild exon 9025508 9025625 . - . gene_id "RvY_06436"; transcript_id "RvY_06436.1"; Scaffold002 framed transcript 9026090 9028270 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; gene_name "TBC"; annotation "putative TBC1 domain family member 13"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBC13_MOUSE(e-value:2.7e-32;bit-score:136.0)"; Scaffold002 framed exon 9026090 9026189 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9026270 9026310 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9026567 9026628 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9026706 9026817 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9026907 9026989 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9027052 9027353 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9027511 9027647 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9027717 9027970 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9028033 9028090 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 framed exon 9028157 9028270 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.1"; Scaffold002 rebuild transcript 9027068 9028270 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.2"; gene_name "TBC"; annotation "putative TBC1 domain family member 13"; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBC13_MOUSE(e-value:2.7e-32;bit-score:136.0)"; Scaffold002 rebuild exon 9027068 9027353 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.2"; Scaffold002 rebuild exon 9027511 9027647 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.2"; Scaffold002 rebuild exon 9027717 9027970 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.2"; Scaffold002 rebuild exon 9028033 9028090 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.2"; Scaffold002 rebuild exon 9028157 9028270 . + . gene_id "RvY_06437"; transcript_id "RvY_06437.2"; Scaffold003 rebuild transcript 1145 4638 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; gene_name "ZC3H18"; annotation "nuclear protein NHN1"; KO "K13092"; Scaffold003 rebuild exon 1145 1320 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 1460 1559 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 1653 1816 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 2051 2478 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 2841 3167 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 3241 3378 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 3521 3836 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 3973 4228 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 4286 4497 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild exon 4575 4638 . - . gene_id "RvY_06438"; transcript_id "RvY_06438.1"; Scaffold003 rebuild transcript 5388 8189 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; gene_name "CTNNBL1"; annotation "beta-catenin-like protein 1"; Pfam "[DUF1716] Eukaryotic domain of unknown function (DUF1716)"; CDD "Eukaryotic domain of unknown function (DUF1716). This domain is found in eukaryotic proteins. A human nuclear protein with this domain is thought to have a role in apoptosis."; KO "K12864"; Scaffold003 rebuild exon 5388 5420 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 5489 5671 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 5733 5845 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 5927 6066 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 6155 6252 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 6324 6509 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 6603 6883 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 7130 7314 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 7594 7898 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 7961 8033 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild exon 8089 8189 . + . gene_id "RvY_06439"; transcript_id "RvY_06439.1"; Scaffold003 rebuild transcript 8279 8951 . - . gene_id "RvY_06440"; transcript_id "RvY_06440.1"; gene_name "COG0790"; annotation "hypothetical protein."; Pfam "[Sel1] Sel1 repeat"; CDD "FOG: TPR repeat, SEL1 subfamily [General function prediction only]"; Scaffold003 rebuild exon 8279 8378 . - . gene_id "RvY_06440"; transcript_id "RvY_06440.1"; Scaffold003 rebuild exon 8569 8951 . - . gene_id "RvY_06440"; transcript_id "RvY_06440.1"; Scaffold003 rebuild transcript 9674 15398 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; gene_name "MTHFD"; annotation "C-1-tetrahydrofolate synthase, cytoplasmic"; Pfam "[FTHFS] Formate--tetrahydrofolate ligase|[THF_DHG_CYH] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain|[THF_DHG_CYH_C] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain"; EC "EC1.5.1.5|EC3.5.4.9|EC6.3.4.3"; KO "K00288"; similar_genes "C1TC_HUMAN(e-value:6.1e-117;bit-score:418.0)"; Scaffold003 rebuild exon 9674 9732 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 9806 9893 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 10008 10121 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 10200 10259 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 10338 10414 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 10514 10614 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 10800 10936 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 11014 11215 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 12307 12442 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 12505 12678 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 12747 12883 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 12966 13195 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 13267 13369 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 13477 13772 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 13994 14105 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 14210 14492 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 14718 14895 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 14982 15242 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild exon 15309 15398 . + . gene_id "RvY_06441"; transcript_id "RvY_06441.1"; Scaffold003 rebuild transcript 15748 16584 . - . gene_id "RvY_06442"; transcript_id "RvY_06442.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 15748 16092 . - . gene_id "RvY_06442"; transcript_id "RvY_06442.1"; Scaffold003 rebuild exon 16180 16370 . - . gene_id "RvY_06442"; transcript_id "RvY_06442.1"; Scaffold003 rebuild exon 16437 16584 . - . gene_id "RvY_06442"; transcript_id "RvY_06442.1"; Scaffold003 rebuild transcript 17339 19377 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; gene_name "MhpC"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]"; EC "EC3.1.1.-"; KO "K13698"; similar_genes "ABHD4_HUMAN(e-value:8.4e-19;bit-score:92.0)"; Scaffold003 rebuild exon 17339 17412 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; Scaffold003 rebuild exon 17767 17864 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; Scaffold003 rebuild exon 18105 18662 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; Scaffold003 rebuild exon 18724 18838 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; Scaffold003 rebuild exon 18992 19178 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; Scaffold003 rebuild exon 19264 19377 . + . gene_id "RvY_06443"; transcript_id "RvY_06443.1"; Scaffold003 rebuild transcript 20375 22519 . - . gene_id "RvY_06444"; transcript_id "RvY_06444.1"; gene_name "DCTN4"; annotation "dynactin 4"; Pfam "[Dynactin_p62] Dynactin p62 family"; KO "K10426"; Scaffold003 rebuild exon 20375 20548 . - . gene_id "RvY_06444"; transcript_id "RvY_06444.1"; Scaffold003 rebuild exon 20611 20999 . - . gene_id "RvY_06444"; transcript_id "RvY_06444.1"; Scaffold003 rebuild exon 21232 21794 . - . gene_id "RvY_06444"; transcript_id "RvY_06444.1"; Scaffold003 rebuild exon 21902 22024 . - . gene_id "RvY_06444"; transcript_id "RvY_06444.1"; Scaffold003 rebuild exon 22218 22519 . - . gene_id "RvY_06444"; transcript_id "RvY_06444.1"; Scaffold003 rebuild transcript 22826 25127 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; gene_name "PIGU"; annotation "phosphatidylinositol glycan, class U"; Pfam "[PIG-U] GPI transamidase subunit PIG-U"; KO "K05293"; similar_genes "PIGU_HUMAN(e-value:2.4e-16;bit-score:83.0)"; Scaffold003 rebuild exon 22826 22976 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 23147 23211 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 23283 23354 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 23442 23504 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 23582 23685 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 23804 23904 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 24013 24119 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 24179 24336 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 24399 24542 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 24615 24739 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 24810 24952 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild exon 25032 25127 . + . gene_id "RvY_06445"; transcript_id "RvY_06445.1"; Scaffold003 rebuild transcript 25467 28092 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.1"; annotation "hypothetical protein."; Pfam "(1)[Ig_2] Immunoglobulin domain|(1)[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain"; Scaffold003 rebuild exon 25467 25902 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.1"; Scaffold003 rebuild exon 26492 27068 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.1"; Scaffold003 rebuild exon 27346 27786 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.1"; Scaffold003 rebuild exon 27852 28092 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.1"; Scaffold003 rebuild transcript 25467 27790 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.2"; annotation "hypothetical protein."; Pfam "(1)[Ig_2] Immunoglobulin domain|(1)[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain"; Scaffold003 rebuild exon 25467 25902 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.2"; Scaffold003 rebuild exon 26492 27068 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.2"; Scaffold003 rebuild exon 27346 27790 . + . gene_id "RvY_06446"; transcript_id "RvY_06446.2"; Scaffold003 rebuild transcript 31012 34923 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; gene_name "TBX20"; annotation "putative T-box protein H15"; Pfam "[T-box]"; CDD "T-box. The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations."; KO "K10185"; similar_genes "H15_DROME(e-value:2.7e-32;bit-score:136.0)"; Scaffold003 rebuild exon 31012 31426 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; Scaffold003 rebuild exon 32491 32576 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; Scaffold003 rebuild exon 32667 32846 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; Scaffold003 rebuild exon 32913 33186 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; Scaffold003 rebuild exon 34367 34628 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; Scaffold003 rebuild exon 34854 34923 . - . gene_id "RvY_06447"; transcript_id "RvY_06447.1"; Scaffold003 rebuild transcript 37890 39213 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; annotation "hypothetical protein."; Pfam "[Translin] Translin family"; similar_genes "TSN_CHICK(e-value:4.6e-11;bit-score:66.0)"; Scaffold003 rebuild exon 37890 37982 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; Scaffold003 rebuild exon 38149 38245 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; Scaffold003 rebuild exon 38319 38415 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; Scaffold003 rebuild exon 38485 38600 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; Scaffold003 rebuild exon 38663 38742 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; Scaffold003 rebuild exon 38902 39213 . + . gene_id "RvY_06448"; transcript_id "RvY_06448.1"; Scaffold003 rebuild transcript 39453 41407 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; annotation "hypothetical protein."; Pfam "[AAT] Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase"; Scaffold003 rebuild exon 39453 39744 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild exon 39810 39983 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild exon 40266 40362 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild exon 40423 40642 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild exon 40740 40841 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild exon 41016 41213 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild exon 41309 41407 . - . gene_id "RvY_06449"; transcript_id "RvY_06449.1"; Scaffold003 rebuild transcript 42116 45077 . - . gene_id "RvY_06450"; transcript_id "RvY_06450.1"; gene_name "SHPK"; annotation "sedoheptulokinase [EC:2.7.1.14]"; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain"; CDD "Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]"; EC "EC2.7.1.14"; KO "K11214"; Scaffold003 rebuild exon 42116 42738 . - . gene_id "RvY_06450"; transcript_id "RvY_06450.1"; Scaffold003 rebuild exon 43002 43189 . - . gene_id "RvY_06450"; transcript_id "RvY_06450.1"; Scaffold003 rebuild exon 43264 43456 . - . gene_id "RvY_06450"; transcript_id "RvY_06450.1"; Scaffold003 rebuild exon 44559 44760 . - . gene_id "RvY_06450"; transcript_id "RvY_06450.1"; Scaffold003 rebuild exon 44829 45077 . - . gene_id "RvY_06450"; transcript_id "RvY_06450.1"; Scaffold003 rebuild transcript 45606 46451 . + . gene_id "RvY_06451"; transcript_id "RvY_06451.1"; annotation "hypothetical protein."; Pfam "[UPF0565] Uncharacterised protein family UPF0565"; Scaffold003 rebuild exon 45606 46451 . + . gene_id "RvY_06451"; transcript_id "RvY_06451.1"; Scaffold003 rebuild transcript 46505 47524 . - . gene_id "RvY_06452"; transcript_id "RvY_06452.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 46505 47524 . - . gene_id "RvY_06452"; transcript_id "RvY_06452.1"; Scaffold003 rebuild transcript 47805 48909 . - . gene_id "RvY_06453"; transcript_id "RvY_06453.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 47805 47921 . - . gene_id "RvY_06453"; transcript_id "RvY_06453.1"; Scaffold003 rebuild exon 48171 48631 . - . gene_id "RvY_06453"; transcript_id "RvY_06453.1"; Scaffold003 rebuild exon 48705 48909 . - . gene_id "RvY_06453"; transcript_id "RvY_06453.1"; Scaffold003 rebuild transcript 66855 67438 . + . gene_id "RvY_06454"; transcript_id "RvY_06454.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 66855 67244 . + . gene_id "RvY_06454"; transcript_id "RvY_06454.1"; Scaffold003 rebuild exon 67313 67438 . + . gene_id "RvY_06454"; transcript_id "RvY_06454.1"; Scaffold003 rebuild transcript 71029 71349 . + . gene_id "RvY_06455"; transcript_id "RvY_06455.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 71029 71349 . + . gene_id "RvY_06455"; transcript_id "RvY_06455.1"; Scaffold003 rebuild transcript 73006 73749 . + . gene_id "RvY_06456"; transcript_id "RvY_06456.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 73006 73529 . + . gene_id "RvY_06456"; transcript_id "RvY_06456.1"; Scaffold003 rebuild exon 73608 73749 . + . gene_id "RvY_06456"; transcript_id "RvY_06456.1"; Scaffold003 rebuild transcript 74389 74637 . - . gene_id "RvY_06457"; transcript_id "RvY_06457.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 74389 74483 . - . gene_id "RvY_06457"; transcript_id "RvY_06457.1"; Scaffold003 rebuild exon 74619 74637 . - . gene_id "RvY_06457"; transcript_id "RvY_06457.1"; Scaffold003 rebuild transcript 74701 75496 . - . gene_id "RvY_06458"; transcript_id "RvY_06458.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 74701 74885 . - . gene_id "RvY_06458"; transcript_id "RvY_06458.1"; Scaffold003 rebuild exon 74986 75496 . - . gene_id "RvY_06458"; transcript_id "RvY_06458.1"; Scaffold003 rebuild transcript 77300 78205 . + . gene_id "RvY_06459"; transcript_id "RvY_06459.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 77300 77798 . + . gene_id "RvY_06459"; transcript_id "RvY_06459.1"; Scaffold003 rebuild exon 77916 78205 . + . gene_id "RvY_06459"; transcript_id "RvY_06459.1"; Scaffold003 rebuild transcript 78460 78930 . - . gene_id "RvY_06460"; transcript_id "RvY_06460.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 78460 78930 . - . gene_id "RvY_06460"; transcript_id "RvY_06460.1"; Scaffold003 rebuild transcript 79008 79418 . - . gene_id "RvY_06461"; transcript_id "RvY_06461.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 79008 79418 . - . gene_id "RvY_06461"; transcript_id "RvY_06461.1"; Scaffold003 rebuild transcript 81530 83804 . - . gene_id "RvY_06462"; transcript_id "RvY_06462.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 81530 81999 . - . gene_id "RvY_06462"; transcript_id "RvY_06462.1"; Scaffold003 rebuild exon 82075 82576 . - . gene_id "RvY_06462"; transcript_id "RvY_06462.1"; Scaffold003 rebuild exon 82795 83234 . - . gene_id "RvY_06462"; transcript_id "RvY_06462.1"; Scaffold003 rebuild exon 83390 83804 . - . gene_id "RvY_06462"; transcript_id "RvY_06462.1"; Scaffold003 rebuild transcript 83899 84771 . - . gene_id "RvY_06463"; transcript_id "RvY_06463.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 83899 83976 . - . gene_id "RvY_06463"; transcript_id "RvY_06463.1"; Scaffold003 rebuild exon 84059 84378 . - . gene_id "RvY_06463"; transcript_id "RvY_06463.1"; Scaffold003 rebuild exon 84452 84614 . - . gene_id "RvY_06463"; transcript_id "RvY_06463.1"; Scaffold003 rebuild exon 84709 84771 . - . gene_id "RvY_06463"; transcript_id "RvY_06463.1"; Scaffold003 rebuild transcript 93593 94000 . + . gene_id "RvY_06464"; transcript_id "RvY_06464.1"; annotation "hypothetical protein."; similar_genes "DAN4_YEAST(e-value:5.1e-06;bit-score:49.0)"; Scaffold003 rebuild exon 93593 94000 . + . gene_id "RvY_06464"; transcript_id "RvY_06464.1"; Scaffold003 rebuild transcript 94692 95380 . - . gene_id "RvY_06465"; transcript_id "RvY_06465.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 94692 94760 . - . gene_id "RvY_06465"; transcript_id "RvY_06465.1"; Scaffold003 rebuild exon 94862 95037 . - . gene_id "RvY_06465"; transcript_id "RvY_06465.1"; Scaffold003 rebuild exon 95125 95202 . - . gene_id "RvY_06465"; transcript_id "RvY_06465.1"; Scaffold003 rebuild exon 95290 95380 . - . gene_id "RvY_06465"; transcript_id "RvY_06465.1"; Scaffold003 rebuild transcript 96493 96735 . + . gene_id "RvY_06466"; transcript_id "RvY_06466.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 96493 96735 . + . gene_id "RvY_06466"; transcript_id "RvY_06466.1"; Scaffold003 rebuild transcript 97130 97375 . + . gene_id "RvY_06467"; transcript_id "RvY_06467.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 97130 97375 . + . gene_id "RvY_06467"; transcript_id "RvY_06467.1"; Scaffold003 rebuild transcript 102387 106784 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "RREB1_CHICK(e-value:1.2e-09;bit-score:61.0)"; Scaffold003 rebuild exon 102387 102755 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; Scaffold003 rebuild exon 103203 103922 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; Scaffold003 rebuild exon 104239 104569 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; Scaffold003 rebuild exon 104806 105171 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; Scaffold003 rebuild exon 105609 106080 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; Scaffold003 rebuild exon 106433 106784 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.1"; Scaffold003 rebuild transcript 101748 106784 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "RREB1_CHICK(e-value:1.2e-09;bit-score:61.0)"; Scaffold003 rebuild exon 101748 101796 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild exon 102454 102755 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild exon 103203 103922 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild exon 104239 104569 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild exon 104806 105171 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild exon 105609 106080 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild exon 106433 106784 . + . gene_id "RvY_06468"; transcript_id "RvY_06468.2"; Scaffold003 rebuild transcript 107297 107467 . + . gene_id "RvY_06469"; transcript_id "RvY_06469.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 107297 107467 . + . gene_id "RvY_06469"; transcript_id "RvY_06469.1"; Scaffold003 rebuild transcript 108322 109419 . + . gene_id "RvY_06470"; transcript_id "RvY_06470.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 108322 109419 . + . gene_id "RvY_06470"; transcript_id "RvY_06470.1"; Scaffold003 rebuild transcript 111591 112850 . - . gene_id "RvY_06471"; transcript_id "RvY_06471.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 111591 112042 . - . gene_id "RvY_06471"; transcript_id "RvY_06471.1"; Scaffold003 rebuild exon 112133 112850 . - . gene_id "RvY_06471"; transcript_id "RvY_06471.1"; Scaffold003 rebuild transcript 115627 115815 . + . gene_id "RvY_06472"; transcript_id "RvY_06472.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 115627 115815 . + . gene_id "RvY_06472"; transcript_id "RvY_06472.1"; Scaffold003 rebuild transcript 118394 123753 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.1"; gene_name "bass"; annotation "hypothetical protein."; Pfam "[DUF4137] SBF-like CPA transporter family (DUF4137)|[SBF] Sodium Bile acid symporter family"; CDD "bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria."; KO "K14343"; Scaffold003 rebuild exon 118394 118428 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.1"; Scaffold003 rebuild exon 119465 119822 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.1"; Scaffold003 rebuild exon 121616 121965 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.1"; Scaffold003 rebuild exon 122569 122740 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.1"; Scaffold003 rebuild exon 123103 123753 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.1"; Scaffold003 rebuild transcript 119454 123753 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.2"; gene_name "bass"; annotation "hypothetical protein."; Pfam "[DUF4137] SBF-like CPA transporter family (DUF4137)|[SBF] Sodium Bile acid symporter family"; CDD "bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria."; KO "K14343"; Scaffold003 rebuild exon 119454 119822 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.2"; Scaffold003 rebuild exon 121616 121965 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.2"; Scaffold003 rebuild exon 122569 122740 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.2"; Scaffold003 rebuild exon 123103 123753 . - . gene_id "RvY_06473"; transcript_id "RvY_06473.2"; Scaffold003 rebuild transcript 125719 127147 . - . gene_id "RvY_06474"; transcript_id "RvY_06474.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 125719 126467 . - . gene_id "RvY_06474"; transcript_id "RvY_06474.1"; Scaffold003 rebuild exon 126892 127147 . - . gene_id "RvY_06474"; transcript_id "RvY_06474.1"; Scaffold003 rebuild transcript 127651 130554 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; gene_name "ALAS"; annotation "5-aminolevulinate synthase, erythroid-specific, mitochondrial"; Pfam "[Aminotran_5] Aminotransferase class-V|[Aminotran_1_2] Aminotransferase class I and II"; CDD "5-aminolevulinate synthase; Validated"; EC "EC2.3.1.37"; KO "K00643"; similar_genes "HEM0_OPSTA(e-value:4.2e-105;bit-score:378.0)"; Scaffold003 rebuild exon 127651 127950 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild exon 128292 128560 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild exon 128649 128813 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild exon 128883 129062 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild exon 129175 129359 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild exon 129550 129982 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild exon 130404 130554 . - . gene_id "RvY_06475"; transcript_id "RvY_06475.1"; Scaffold003 rebuild transcript 131083 131497 . - . gene_id "RvY_06476"; transcript_id "RvY_06476.1"; gene_name "Eclosion"; annotation "hypothetical protein."; Pfam "[Eclosion] Eclosion hormone"; CDD "Eclosion hormone. Eclosion hormone is an insect neuropeptide that triggers the performance of ecdysis behaviour, which causes shedding of the old cuticle at the end of a molt."; Scaffold003 rebuild exon 131083 131215 . - . gene_id "RvY_06476"; transcript_id "RvY_06476.1"; Scaffold003 rebuild exon 131295 131497 . - . gene_id "RvY_06476"; transcript_id "RvY_06476.1"; Scaffold003 rebuild transcript 131083 131497 . - . gene_id "RvY_06476"; transcript_id "RvY_06476.2"; gene_name "Eclosion"; annotation "hypothetical protein."; Pfam "[Eclosion] Eclosion hormone"; CDD "Eclosion hormone. Eclosion hormone is an insect neuropeptide that triggers the performance of ecdysis behaviour, which causes shedding of the old cuticle at the end of a molt."; Scaffold003 rebuild exon 131083 131215 . - . gene_id "RvY_06476"; transcript_id "RvY_06476.2"; Scaffold003 rebuild exon 131301 131497 . - . gene_id "RvY_06476"; transcript_id "RvY_06476.2"; Scaffold003 rebuild transcript 132489 134506 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.1"; gene_name "(1)DNAJB12(2)DnaJ_bact"; annotation "(1)DnaJ homolog subfamily B member 12(2)hypothetical protein."; Pfam "[DnaJ]|(1)[DUF1977]"; CDD "(2)chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; KO "(1)K09518"; similar_genes "DJB12_BOVIN(e-value:3.1e-12;bit-score:70.0)"; Scaffold003 rebuild exon 132489 132898 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.1"; Scaffold003 rebuild exon 133410 133818 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.1"; Scaffold003 rebuild exon 134046 134302 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.1"; Scaffold003 rebuild exon 134380 134506 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.1"; Scaffold003 rebuild transcript 133315 134506 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.2"; gene_name "(1)DNAJB12(2)DnaJ_bact"; annotation "(1)DnaJ homolog subfamily B member 12(2)hypothetical protein."; Pfam "[DnaJ]|(1)[DUF1977]"; CDD "(2)chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; KO "(1)K09518"; similar_genes "DJB12_BOVIN(e-value:3.1e-12;bit-score:70.0)"; Scaffold003 rebuild exon 133315 133818 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.2"; Scaffold003 rebuild exon 134046 134302 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.2"; Scaffold003 rebuild exon 134380 134506 . - . gene_id "RvY_06477"; transcript_id "RvY_06477.2"; Scaffold003 rebuild transcript 135422 135634 . - . gene_id "RvY_06478"; transcript_id "RvY_06478.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 135422 135634 . - . gene_id "RvY_06478"; transcript_id "RvY_06478.1"; Scaffold003 rebuild transcript 136636 141636 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; gene_name "NSF"; annotation "Vesicle-fusing ATPase 2"; Pfam "[CDC48_N] Cell division protein 48 (CDC48), N-terminal domain|[Arch_ATPase] Archaeal ATPase|[TIP49] TIP49 C-terminus|[AAA_16] AAA ATPase domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[AAA_14] AAA domain|[AAA_22] AAA domain|[CDC48_2] Cell division protein 48 (CDC48), domain 2|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[AAA_19] Part of AAA domain|[AAA_17] AAA domain|[AAA_2] AAA domain (Cdc48 subfamily)|[AAA_33] AAA domain|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus."; EC "EC3.6.4.6"; KO "K06027"; similar_genes "NSF2_DROME(e-value:9.7e-143;bit-score:503.0)"; Scaffold003 rebuild exon 136636 136739 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 137544 137640 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 137739 137854 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 137940 138085 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 138170 138219 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 138758 138852 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 138926 139272 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 139599 139760 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 139826 140100 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 140416 140733 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild exon 141109 141636 . + . gene_id "RvY_06479"; transcript_id "RvY_06479.1"; Scaffold003 rebuild transcript 143253 143468 . - . gene_id "RvY_06480"; transcript_id "RvY_06480.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 143253 143468 . - . gene_id "RvY_06480"; transcript_id "RvY_06480.1"; Scaffold003 rebuild transcript 144228 145440 . - . gene_id "RvY_06481"; transcript_id "RvY_06481.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold003 rebuild exon 144228 144419 . - . gene_id "RvY_06481"; transcript_id "RvY_06481.1"; Scaffold003 rebuild exon 144574 144801 . - . gene_id "RvY_06481"; transcript_id "RvY_06481.1"; Scaffold003 rebuild exon 144871 145118 . - . gene_id "RvY_06481"; transcript_id "RvY_06481.1"; Scaffold003 rebuild exon 145184 145296 . - . gene_id "RvY_06481"; transcript_id "RvY_06481.1"; Scaffold003 rebuild exon 145376 145440 . - . gene_id "RvY_06481"; transcript_id "RvY_06481.1"; Scaffold003 rebuild transcript 148760 152330 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; KO "K14708"; similar_genes "S2611_MOUSE(e-value:2.6e-24;bit-score:110.0)"; Scaffold003 rebuild exon 148760 149560 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; Scaffold003 rebuild exon 149627 150081 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; Scaffold003 rebuild exon 150159 150301 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; Scaffold003 rebuild exon 150376 150547 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; Scaffold003 rebuild exon 151365 151575 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; Scaffold003 rebuild exon 151986 152330 . - . gene_id "RvY_06482"; transcript_id "RvY_06482.1"; Scaffold003 rebuild transcript 158360 159958 . - . gene_id "RvY_06483"; transcript_id "RvY_06483.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold003 rebuild exon 158360 159958 . - . gene_id "RvY_06483"; transcript_id "RvY_06483.1"; Scaffold003 rebuild transcript 164771 167154 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; gene_name "K01183"; annotation "chitinase [EC:3.2.1.14]"; Pfam "[CBM_14] Chitin binding Peritrophin-A domain|[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold003 rebuild exon 164771 164849 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild exon 164961 165149 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild exon 165258 165496 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild exon 165574 165689 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild exon 165768 165891 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild exon 165974 166285 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild exon 166480 167154 . + . gene_id "RvY_06484"; transcript_id "RvY_06484.1"; Scaffold003 rebuild transcript 167748 168422 . + . gene_id "RvY_06485"; transcript_id "RvY_06485.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 167748 167982 . + . gene_id "RvY_06485"; transcript_id "RvY_06485.1"; Scaffold003 rebuild exon 168058 168422 . + . gene_id "RvY_06485"; transcript_id "RvY_06485.1"; Scaffold003 rebuild transcript 170615 171933 . + . gene_id "RvY_06486"; transcript_id "RvY_06486.1"; gene_name "rimI"; annotation "hypothetical protein."; Pfam "[FR47] FR47-like protein|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database."; Scaffold003 rebuild exon 170615 170829 . + . gene_id "RvY_06486"; transcript_id "RvY_06486.1"; Scaffold003 rebuild exon 170910 171045 . + . gene_id "RvY_06486"; transcript_id "RvY_06486.1"; Scaffold003 rebuild exon 171418 171933 . + . gene_id "RvY_06486"; transcript_id "RvY_06486.1"; Scaffold003 rebuild transcript 172036 173406 . - . gene_id "RvY_06487"; transcript_id "RvY_06487.1"; gene_name "mrp"; annotation "ATP-binding protein involved in chromosome partitioning"; Pfam "[Fer4_NifH] 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family|[ParA] ParA/MinD ATPase like"; CDD "putative ATPase; Provisional"; KO "K03593"; similar_genes "NUBPL_MOUSE(e-value:7.3e-18;bit-score:88.0)"; Scaffold003 rebuild exon 172036 172128 . - . gene_id "RvY_06487"; transcript_id "RvY_06487.1"; Scaffold003 rebuild exon 172196 172278 . - . gene_id "RvY_06487"; transcript_id "RvY_06487.1"; Scaffold003 rebuild exon 172341 172547 . - . gene_id "RvY_06487"; transcript_id "RvY_06487.1"; Scaffold003 rebuild exon 173307 173406 . - . gene_id "RvY_06487"; transcript_id "RvY_06487.1"; Scaffold003 rebuild transcript 173891 175913 . + . gene_id "RvY_06488"; transcript_id "RvY_06488.1"; gene_name "COG3177"; annotation "putative Adenosine monophosphate-protein transferase FICD"; Pfam "[Fic] Fic/DOC family"; CDD "Fic family protein [Function unknown]"; EC "EC2.7.7.n1"; similar_genes "FICD_XENTR(e-value:2.3e-46;bit-score:183.0)"; Scaffold003 rebuild exon 173891 174061 . + . gene_id "RvY_06488"; transcript_id "RvY_06488.1"; Scaffold003 rebuild exon 174164 174421 . + . gene_id "RvY_06488"; transcript_id "RvY_06488.1"; Scaffold003 rebuild exon 174592 174997 . + . gene_id "RvY_06488"; transcript_id "RvY_06488.1"; Scaffold003 rebuild exon 175061 175354 . + . gene_id "RvY_06488"; transcript_id "RvY_06488.1"; Scaffold003 rebuild exon 175570 175913 . + . gene_id "RvY_06488"; transcript_id "RvY_06488.1"; Scaffold003 rebuild transcript 177223 178462 . + . gene_id "RvY_06489"; transcript_id "RvY_06489.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 177223 177909 . + . gene_id "RvY_06489"; transcript_id "RvY_06489.1"; Scaffold003 rebuild exon 177995 178462 . + . gene_id "RvY_06489"; transcript_id "RvY_06489.1"; Scaffold003 rebuild transcript 182257 184771 . + . gene_id "RvY_06490"; transcript_id "RvY_06490.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 182257 182403 . + . gene_id "RvY_06490"; transcript_id "RvY_06490.1"; Scaffold003 rebuild exon 182517 182926 . + . gene_id "RvY_06490"; transcript_id "RvY_06490.1"; Scaffold003 rebuild exon 183007 183473 . + . gene_id "RvY_06490"; transcript_id "RvY_06490.1"; Scaffold003 rebuild exon 183643 183903 . + . gene_id "RvY_06490"; transcript_id "RvY_06490.1"; Scaffold003 rebuild exon 184431 184771 . + . gene_id "RvY_06490"; transcript_id "RvY_06490.1"; Scaffold003 rebuild transcript 187325 188335 . + . gene_id "RvY_06491"; transcript_id "RvY_06491.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 187325 187601 . + . gene_id "RvY_06491"; transcript_id "RvY_06491.1"; Scaffold003 rebuild exon 187824 188335 . + . gene_id "RvY_06491"; transcript_id "RvY_06491.1"; Scaffold003 rebuild transcript 190405 191128 . + . gene_id "RvY_06492"; transcript_id "RvY_06492.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 190405 190471 . + . gene_id "RvY_06492"; transcript_id "RvY_06492.1"; Scaffold003 rebuild exon 190564 190755 . + . gene_id "RvY_06492"; transcript_id "RvY_06492.1"; Scaffold003 rebuild exon 190866 191128 . + . gene_id "RvY_06492"; transcript_id "RvY_06492.1"; Scaffold003 rebuild transcript 191810 192621 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.1"; gene_name "COG3940"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_43] Glycosyl hydrolases family 43"; CDD "Predicted beta-xylosidase [General function prediction only]"; Scaffold003 rebuild exon 191810 192067 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.1"; Scaffold003 rebuild exon 192244 192621 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.1"; Scaffold003 rebuild transcript 191810 192621 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.2"; gene_name "COG3940"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_43] Glycosyl hydrolases family 43"; CDD "Predicted beta-xylosidase [General function prediction only]"; Scaffold003 rebuild exon 191810 191868 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.2"; Scaffold003 rebuild exon 191929 192067 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.2"; Scaffold003 rebuild exon 192244 192621 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.2"; Scaffold003 rebuild transcript 191810 192184 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.3"; gene_name "COG3940"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_43] Glycosyl hydrolases family 43"; CDD "Predicted beta-xylosidase [General function prediction only]"; Scaffold003 rebuild exon 191810 192184 . + . gene_id "RvY_06493"; transcript_id "RvY_06493.3"; Scaffold003 rebuild transcript 192907 193510 . - . gene_id "RvY_06494"; transcript_id "RvY_06494.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 192907 193121 . - . gene_id "RvY_06494"; transcript_id "RvY_06494.1"; Scaffold003 rebuild exon 193381 193510 . - . gene_id "RvY_06494"; transcript_id "RvY_06494.1"; Scaffold003 rebuild transcript 195742 196726 . + . gene_id "RvY_06495"; transcript_id "RvY_06495.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 195742 195799 . + . gene_id "RvY_06495"; transcript_id "RvY_06495.1"; Scaffold003 rebuild exon 196313 196372 . + . gene_id "RvY_06495"; transcript_id "RvY_06495.1"; Scaffold003 rebuild exon 196449 196726 . + . gene_id "RvY_06495"; transcript_id "RvY_06495.1"; Scaffold003 rebuild transcript 197773 198880 . + . gene_id "RvY_06496"; transcript_id "RvY_06496.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 197773 197890 . + . gene_id "RvY_06496"; transcript_id "RvY_06496.1"; Scaffold003 rebuild exon 197958 198251 . + . gene_id "RvY_06496"; transcript_id "RvY_06496.1"; Scaffold003 rebuild exon 198311 198551 . + . gene_id "RvY_06496"; transcript_id "RvY_06496.1"; Scaffold003 rebuild exon 198652 198880 . + . gene_id "RvY_06496"; transcript_id "RvY_06496.1"; Scaffold003 rebuild transcript 198923 200083 . + . gene_id "RvY_06497"; transcript_id "RvY_06497.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 198923 199234 . + . gene_id "RvY_06497"; transcript_id "RvY_06497.1"; Scaffold003 rebuild exon 199955 200083 . + . gene_id "RvY_06497"; transcript_id "RvY_06497.1"; Scaffold003 rebuild transcript 200570 201085 . + . gene_id "RvY_06498"; transcript_id "RvY_06498.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 200570 200750 . + . gene_id "RvY_06498"; transcript_id "RvY_06498.1"; Scaffold003 rebuild exon 200820 201085 . + . gene_id "RvY_06498"; transcript_id "RvY_06498.1"; Scaffold003 rebuild transcript 201414 201957 . - . gene_id "RvY_06499"; transcript_id "RvY_06499.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 201414 201427 . - . gene_id "RvY_06499"; transcript_id "RvY_06499.1"; Scaffold003 rebuild exon 201507 201677 . - . gene_id "RvY_06499"; transcript_id "RvY_06499.1"; Scaffold003 rebuild exon 201891 201957 . - . gene_id "RvY_06499"; transcript_id "RvY_06499.1"; Scaffold003 rebuild transcript 202921 204151 . + . gene_id "RvY_06500"; transcript_id "RvY_06500.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 202921 202993 . + . gene_id "RvY_06500"; transcript_id "RvY_06500.1"; Scaffold003 rebuild exon 203388 203555 . + . gene_id "RvY_06500"; transcript_id "RvY_06500.1"; Scaffold003 rebuild exon 203895 204151 . + . gene_id "RvY_06500"; transcript_id "RvY_06500.1"; Scaffold003 rebuild transcript 204037 204398 . - . gene_id "RvY_06501"; transcript_id "RvY_06501.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 204037 204165 . - . gene_id "RvY_06501"; transcript_id "RvY_06501.1"; Scaffold003 rebuild exon 204300 204398 . - . gene_id "RvY_06501"; transcript_id "RvY_06501.1"; Scaffold003 rebuild transcript 205278 205469 . + . gene_id "RvY_06502"; transcript_id "RvY_06502.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 205278 205469 . + . gene_id "RvY_06502"; transcript_id "RvY_06502.1"; Scaffold003 rebuild transcript 205991 209163 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 205991 206388 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 206463 206664 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 206827 206976 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 207064 207406 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 207653 207818 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 207844 208056 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 208339 208565 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild exon 208658 209163 . - . gene_id "RvY_06503"; transcript_id "RvY_06503.1"; Scaffold003 rebuild transcript 209679 210851 . + . gene_id "RvY_06504"; transcript_id "RvY_06504.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:5.5e-18;bit-score:89.0)"; Scaffold003 rebuild exon 209679 210016 . + . gene_id "RvY_06504"; transcript_id "RvY_06504.1"; Scaffold003 rebuild exon 210452 210851 . + . gene_id "RvY_06504"; transcript_id "RvY_06504.1"; Scaffold003 rebuild transcript 212512 214661 . - . gene_id "RvY_06505"; transcript_id "RvY_06505.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 212512 212661 . - . gene_id "RvY_06505"; transcript_id "RvY_06505.1"; Scaffold003 rebuild exon 213257 213391 . - . gene_id "RvY_06505"; transcript_id "RvY_06505.1"; Scaffold003 rebuild exon 213647 213934 . - . gene_id "RvY_06505"; transcript_id "RvY_06505.1"; Scaffold003 rebuild exon 214171 214461 . - . gene_id "RvY_06505"; transcript_id "RvY_06505.1"; Scaffold003 rebuild exon 214494 214661 . - . gene_id "RvY_06505"; transcript_id "RvY_06505.1"; Scaffold003 rebuild transcript 216962 217648 . + . gene_id "RvY_06506"; transcript_id "RvY_06506.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 216962 217019 . + . gene_id "RvY_06506"; transcript_id "RvY_06506.1"; Scaffold003 rebuild exon 217088 217288 . + . gene_id "RvY_06506"; transcript_id "RvY_06506.1"; Scaffold003 rebuild exon 217353 217648 . + . gene_id "RvY_06506"; transcript_id "RvY_06506.1"; Scaffold003 rebuild transcript 218142 219754 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 218142 218163 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.1"; Scaffold003 rebuild exon 218234 218292 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.1"; Scaffold003 rebuild exon 218384 218960 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.1"; Scaffold003 rebuild exon 219145 219545 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.1"; Scaffold003 rebuild exon 219611 219754 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.1"; Scaffold003 rebuild transcript 218142 219754 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 218142 218163 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.2"; Scaffold003 rebuild exon 218234 218292 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.2"; Scaffold003 rebuild exon 218387 218960 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.2"; Scaffold003 rebuild exon 219145 219545 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.2"; Scaffold003 rebuild exon 219611 219754 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.2"; Scaffold003 rebuild transcript 218519 219754 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.3"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 218519 218960 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.3"; Scaffold003 rebuild exon 219145 219545 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.3"; Scaffold003 rebuild exon 219611 219754 . + . gene_id "RvY_06507"; transcript_id "RvY_06507.3"; Scaffold003 rebuild transcript 220808 221664 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 220808 221106 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.1"; Scaffold003 rebuild exon 221192 221298 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.1"; Scaffold003 rebuild exon 221363 221474 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.1"; Scaffold003 rebuild exon 221547 221664 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.1"; Scaffold003 rebuild transcript 220808 221657 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 220808 221106 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.2"; Scaffold003 rebuild exon 221192 221298 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.2"; Scaffold003 rebuild exon 221363 221469 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.2"; Scaffold003 rebuild exon 221547 221657 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.2"; Scaffold003 rebuild transcript 220902 221664 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.3"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 220902 221106 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.3"; Scaffold003 rebuild exon 221192 221298 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.3"; Scaffold003 rebuild exon 221363 221469 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.3"; Scaffold003 rebuild exon 221547 221664 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.3"; Scaffold003 rebuild transcript 220902 221473 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.4"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 220902 221106 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.4"; Scaffold003 rebuild exon 221192 221298 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.4"; Scaffold003 rebuild exon 221363 221473 . + . gene_id "RvY_06508"; transcript_id "RvY_06508.4"; Scaffold003 rebuild transcript 222948 223905 . + . gene_id "RvY_06509"; transcript_id "RvY_06509.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 222948 223135 . + . gene_id "RvY_06509"; transcript_id "RvY_06509.1"; Scaffold003 rebuild exon 223290 223358 . + . gene_id "RvY_06509"; transcript_id "RvY_06509.1"; Scaffold003 rebuild exon 223440 223905 . + . gene_id "RvY_06509"; transcript_id "RvY_06509.1"; Scaffold003 rebuild transcript 225077 225454 . + . gene_id "RvY_06510"; transcript_id "RvY_06510.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 225077 225454 . + . gene_id "RvY_06510"; transcript_id "RvY_06510.1"; Scaffold003 rebuild transcript 227742 228686 . + . gene_id "RvY_06511"; transcript_id "RvY_06511.1"; gene_name "PARS"; annotation "prolyl-tRNA synthetase [EC:6.1.1.15]"; Pfam "[tRNA-synt_2b] tRNA synthetase class II core domain (G, H, P, S and T)"; CDD "Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes."; EC "EC6.1.1.15"; KO "K01881"; similar_genes "SYP_BACSK(e-value:4.1e-14;bit-score:76.0)"; Scaffold003 rebuild exon 227742 227930 . + . gene_id "RvY_06511"; transcript_id "RvY_06511.1"; Scaffold003 rebuild exon 228101 228281 . + . gene_id "RvY_06511"; transcript_id "RvY_06511.1"; Scaffold003 rebuild exon 228394 228467 . + . gene_id "RvY_06511"; transcript_id "RvY_06511.1"; Scaffold003 rebuild exon 228588 228686 . + . gene_id "RvY_06511"; transcript_id "RvY_06511.1"; Scaffold003 rebuild transcript 228836 230101 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; gene_name "PARS"; annotation "prolyl-tRNA synthetase [EC:6.1.1.15]"; Pfam "[HGTP_anticodon] Anticodon binding domain"; CDD "prolyl-tRNA synthetase; Provisional"; EC "EC6.1.1.15"; KO "K01881"; similar_genes "SYPM_MOUSE(e-value:1.0e-12;bit-score:71.0)"; Scaffold003 rebuild exon 228836 228845 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; Scaffold003 rebuild exon 228920 229027 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; Scaffold003 rebuild exon 229141 229417 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; Scaffold003 rebuild exon 229490 229625 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; Scaffold003 rebuild exon 229698 229880 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; Scaffold003 rebuild exon 229952 230101 . + . gene_id "RvY_06512"; transcript_id "RvY_06512.1"; Scaffold003 rebuild transcript 230369 234122 . - . gene_id "RvY_06513"; transcript_id "RvY_06513.1"; gene_name "K00924"; annotation "putative Serine/threonine-protein kinase SRPK2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K00924"; similar_genes "SRPK2_MOUSE(e-value:4.8e-34;bit-score:142.0)"; Scaffold003 rebuild exon 230369 230466 . - . gene_id "RvY_06513"; transcript_id "RvY_06513.1"; Scaffold003 rebuild exon 230741 230906 . - . gene_id "RvY_06513"; transcript_id "RvY_06513.1"; Scaffold003 rebuild exon 231416 232080 . - . gene_id "RvY_06513"; transcript_id "RvY_06513.1"; Scaffold003 rebuild exon 232732 233323 . - . gene_id "RvY_06513"; transcript_id "RvY_06513.1"; Scaffold003 rebuild exon 233784 234122 . - . gene_id "RvY_06513"; transcript_id "RvY_06513.1"; Scaffold003 rebuild transcript 234631 237089 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; gene_name "K00815"; annotation "Tyrosine aminotransferase"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs."; EC "EC2.6.1.5"; KO "K00815"; similar_genes "ATTY_MOUSE(e-value:7.7e-77;bit-score:284.0)"; Scaffold003 rebuild exon 234631 234822 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 234896 235081 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 235199 235397 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 235474 235748 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 235849 236007 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 236278 236450 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 236517 236783 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild exon 236891 237089 . - . gene_id "RvY_06514"; transcript_id "RvY_06514.1"; Scaffold003 rebuild transcript 238483 238998 . - . gene_id "RvY_06515"; transcript_id "RvY_06515.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 238483 238664 . - . gene_id "RvY_06515"; transcript_id "RvY_06515.1"; Scaffold003 rebuild exon 238986 238998 . - . gene_id "RvY_06515"; transcript_id "RvY_06515.1"; Scaffold003 rebuild transcript 240499 240714 . - . gene_id "RvY_06516"; transcript_id "RvY_06516.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 240499 240714 . - . gene_id "RvY_06516"; transcript_id "RvY_06516.1"; Scaffold003 rebuild transcript 240770 241892 . + . gene_id "RvY_06517"; transcript_id "RvY_06517.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 240770 241010 . + . gene_id "RvY_06517"; transcript_id "RvY_06517.1"; Scaffold003 rebuild exon 241392 241628 . + . gene_id "RvY_06517"; transcript_id "RvY_06517.1"; Scaffold003 rebuild exon 241828 241892 . + . gene_id "RvY_06517"; transcript_id "RvY_06517.1"; Scaffold003 rebuild transcript 241965 243836 . + . gene_id "RvY_06518"; transcript_id "RvY_06518.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 241965 242264 . + . gene_id "RvY_06518"; transcript_id "RvY_06518.1"; Scaffold003 rebuild exon 242826 243032 . + . gene_id "RvY_06518"; transcript_id "RvY_06518.1"; Scaffold003 rebuild exon 243113 243274 . + . gene_id "RvY_06518"; transcript_id "RvY_06518.1"; Scaffold003 rebuild exon 243693 243836 . + . gene_id "RvY_06518"; transcript_id "RvY_06518.1"; Scaffold003 rebuild transcript 244200 244589 . + . gene_id "RvY_06519"; transcript_id "RvY_06519.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc3_2] Transposase|[HTH_32] Homeodomain-like domain|[HTH_29] Winged helix-turn helix"; Scaffold003 rebuild exon 244200 244589 . + . gene_id "RvY_06519"; transcript_id "RvY_06519.1"; Scaffold003 rebuild transcript 247259 248516 . - . gene_id "RvY_06520"; transcript_id "RvY_06520.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 247259 247284 . - . gene_id "RvY_06520"; transcript_id "RvY_06520.1"; Scaffold003 rebuild exon 248246 248516 . - . gene_id "RvY_06520"; transcript_id "RvY_06520.1"; Scaffold003 rebuild transcript 248584 248781 . + . gene_id "RvY_06521"; transcript_id "RvY_06521.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 248584 248781 . + . gene_id "RvY_06521"; transcript_id "RvY_06521.1"; Scaffold003 rebuild transcript 249267 249509 . - . gene_id "RvY_06522"; transcript_id "RvY_06522.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 249267 249509 . - . gene_id "RvY_06522"; transcript_id "RvY_06522.1"; Scaffold003 rebuild transcript 249903 250139 . - . gene_id "RvY_06523"; transcript_id "RvY_06523.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 249903 250139 . - . gene_id "RvY_06523"; transcript_id "RvY_06523.1"; Scaffold003 rebuild transcript 254006 257172 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; annotation "Lipoma-preferred partner homolog"; Pfam "[LIM]"; similar_genes "LPP_CHICK(e-value:1.5e-56;bit-score:217.0)"; Scaffold003 rebuild exon 254006 254132 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 254201 254305 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 254407 254450 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 254564 254650 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 254716 254763 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 255054 255121 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 255611 255712 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 255874 256089 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 256376 256681 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild exon 257007 257172 . - . gene_id "RvY_06524"; transcript_id "RvY_06524.1"; Scaffold003 rebuild transcript 257540 257722 . + . gene_id "RvY_06525"; transcript_id "RvY_06525.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 257540 257722 . + . gene_id "RvY_06525"; transcript_id "RvY_06525.1"; Scaffold003 rebuild transcript 257999 258187 . + . gene_id "RvY_06526"; transcript_id "RvY_06526.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 257999 258187 . + . gene_id "RvY_06526"; transcript_id "RvY_06526.1"; Scaffold003 rebuild transcript 259664 259918 . + . gene_id "RvY_06527"; transcript_id "RvY_06527.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 259664 259918 . + . gene_id "RvY_06527"; transcript_id "RvY_06527.1"; Scaffold003 rebuild transcript 261310 262091 . - . gene_id "RvY_06528"; transcript_id "RvY_06528.1"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GUC2D_RAT(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 261310 261393 . - . gene_id "RvY_06528"; transcript_id "RvY_06528.1"; Scaffold003 rebuild exon 261474 261609 . - . gene_id "RvY_06528"; transcript_id "RvY_06528.1"; Scaffold003 rebuild exon 261761 261901 . - . gene_id "RvY_06528"; transcript_id "RvY_06528.1"; Scaffold003 rebuild exon 261994 262091 . - . gene_id "RvY_06528"; transcript_id "RvY_06528.1"; Scaffold003 rebuild transcript 262151 263146 . - . gene_id "RvY_06529"; transcript_id "RvY_06529.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[NIT] Nitrate and nitrite sensing|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_ANGJA(e-value:6.1e-13;bit-score:72.0)"; Scaffold003 rebuild exon 262151 263146 . - . gene_id "RvY_06529"; transcript_id "RvY_06529.1"; Scaffold003 rebuild transcript 266464 269632 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; gene_name "ACSL"; annotation "long-chain acyl-CoA synthetase [EC:6.2.1.3]"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "acyl-CoA synthetase; Validated"; EC "EC6.2.1.-|EC6.2.1.3"; KO "K01897"; similar_genes "ACSF2_RAT(e-value:2.4e-16;bit-score:83.0)"; Scaffold003 rebuild exon 266464 266664 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 266732 267011 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 267126 267274 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 267395 267502 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 267884 268035 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 268099 268532 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 268728 268974 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 269199 269467 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild exon 269529 269632 . - . gene_id "RvY_06530"; transcript_id "RvY_06530.1"; Scaffold003 rebuild transcript 269662 270021 . + . gene_id "RvY_06531"; transcript_id "RvY_06531.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 269662 270021 . + . gene_id "RvY_06531"; transcript_id "RvY_06531.1"; Scaffold003 rebuild transcript 270000 270299 . + . gene_id "RvY_06531"; transcript_id "RvY_06531.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 270000 270299 . + . gene_id "RvY_06531"; transcript_id "RvY_06531.2"; Scaffold003 rebuild transcript 271520 272829 . + . gene_id "RvY_06532"; transcript_id "RvY_06532.1"; gene_name "CHMP5"; annotation "Charged multivesicular body protein 5"; Pfam "[Snf7]"; KO "K12198"; similar_genes "CHMP5_PONAB(e-value:6.6e-76;bit-score:281.0)"; Scaffold003 rebuild exon 271520 271588 . + . gene_id "RvY_06532"; transcript_id "RvY_06532.1"; Scaffold003 rebuild exon 271652 271756 . + . gene_id "RvY_06532"; transcript_id "RvY_06532.1"; Scaffold003 rebuild exon 271950 272162 . + . gene_id "RvY_06532"; transcript_id "RvY_06532.1"; Scaffold003 rebuild exon 272478 272586 . + . gene_id "RvY_06532"; transcript_id "RvY_06532.1"; Scaffold003 rebuild exon 272657 272829 . + . gene_id "RvY_06532"; transcript_id "RvY_06532.1"; Scaffold003 rebuild transcript 273743 274646 . + . gene_id "RvY_06533"; transcript_id "RvY_06533.1"; annotation "hypothetical protein."; Pfam "[zf-RanBP] Zn-finger in Ran binding protein and others"; Scaffold003 rebuild exon 273743 273753 . + . gene_id "RvY_06533"; transcript_id "RvY_06533.1"; Scaffold003 rebuild exon 273872 274021 . + . gene_id "RvY_06533"; transcript_id "RvY_06533.1"; Scaffold003 rebuild exon 274184 274646 . + . gene_id "RvY_06533"; transcript_id "RvY_06533.1"; Scaffold003 rebuild transcript 275265 275684 . - . gene_id "RvY_06534"; transcript_id "RvY_06534.1"; gene_name "PTZ00063"; annotation "hypothetical protein."; CDD "histone deacetylase; Provisional"; EC "EC3.5.1.98"; similar_genes "HDAC1_MOUSE(e-value:1.2e-11;bit-score:68.0)"; Scaffold003 rebuild exon 275265 275684 . - . gene_id "RvY_06534"; transcript_id "RvY_06534.1"; Scaffold003 rebuild transcript 276479 276874 . + . gene_id "RvY_06535"; transcript_id "RvY_06535.1"; annotation "hypothetical protein."; similar_genes "HD_MOUSE(e-value:6.6e-06;bit-score:49.0)"; Scaffold003 rebuild exon 276479 276874 . + . gene_id "RvY_06535"; transcript_id "RvY_06535.1"; Scaffold003 rebuild transcript 277378 277557 . + . gene_id "RvY_06536"; transcript_id "RvY_06536.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 277378 277557 . + . gene_id "RvY_06536"; transcript_id "RvY_06536.1"; Scaffold003 rebuild transcript 277577 277889 . + . gene_id "RvY_06537"; transcript_id "RvY_06537.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 277577 277606 . + . gene_id "RvY_06537"; transcript_id "RvY_06537.1"; Scaffold003 rebuild exon 277689 277889 . + . gene_id "RvY_06537"; transcript_id "RvY_06537.1"; Scaffold003 rebuild transcript 278587 283477 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; annotation "Host cell factor 1"; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[fn3] Fibronectin type III domain|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; KO "K14966"; similar_genes "HCFC1_HUMAN(e-value:1.3e-59;bit-score:227.0)"; Scaffold003 rebuild exon 278587 278603 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 278669 278969 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 279306 279530 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 279617 279870 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 280101 280391 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 280643 280936 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 281110 281227 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 281288 281463 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 281626 281925 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 282110 282336 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 282395 282647 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 282702 282758 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild exon 283291 283477 . - . gene_id "RvY_06538"; transcript_id "RvY_06538.1"; Scaffold003 rebuild transcript 283751 285109 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 283751 284364 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.1"; Scaffold003 rebuild exon 284614 285109 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.1"; Scaffold003 rebuild transcript 283901 285161 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 283901 284364 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.2"; Scaffold003 rebuild exon 284614 284969 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.2"; Scaffold003 rebuild exon 285028 285161 . + . gene_id "RvY_06539"; transcript_id "RvY_06539.2"; Scaffold003 rebuild transcript 285767 289078 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; gene_name "SLC6A15"; annotation "putative Sodium-dependent neutral amino acid transporter B(0)AT1"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "K05048"; similar_genes "S6A19_PONAB(e-value:1.3e-40;bit-score:164.0)"; Scaffold003 rebuild exon 285767 286072 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 286244 286406 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 286472 286631 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 286718 286919 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 286991 287171 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 287483 287971 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 288065 288360 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 288456 288496 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 288562 288612 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild exon 288733 289078 . - . gene_id "RvY_06540"; transcript_id "RvY_06540.1"; Scaffold003 rebuild transcript 290555 295547 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; gene_name "PDCD6IP"; annotation "programmed cell death 6-interacting protein"; Pfam "[BRO1] BRO1-like domain|[ALIX_LYPXL_bnd] ALIX V-shaped domain binding to HIV"; KO "K12200"; similar_genes "ALX1_CAEEL(e-value:1.9e-22;bit-score:104.0)"; Scaffold003 rebuild exon 290555 290706 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 291024 291335 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 291659 291824 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 291893 292173 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 292339 292720 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 293085 293262 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 293339 293462 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 293525 293750 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 294047 294163 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 294263 294372 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 294599 294880 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 294961 295079 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild exon 295339 295547 . - . gene_id "RvY_06541"; transcript_id "RvY_06541.1"; Scaffold003 rebuild transcript 296805 299534 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)"; similar_genes "RN157_MOUSE(e-value:6.7e-25;bit-score:112.0)"; Scaffold003 rebuild exon 296805 296895 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 296964 297082 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 297267 297355 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 297467 297589 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 297649 297833 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 297904 298064 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 298359 298771 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 298898 299096 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild exon 299310 299534 . + . gene_id "RvY_06542"; transcript_id "RvY_06542.1"; Scaffold003 rebuild transcript 300236 304315 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; gene_name "K01183"; annotation "chitinase [EC:3.2.1.14]"; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold003 rebuild exon 300236 300544 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 300730 300960 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 301082 301333 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 301559 301744 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 301905 302027 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 302109 302458 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 302672 303137 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild exon 303425 304315 . + . gene_id "RvY_06543"; transcript_id "RvY_06543.1"; Scaffold003 rebuild transcript 304574 306085 . - . gene_id "RvY_06544"; transcript_id "RvY_06544.1"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; similar_genes "P2RX4_RAT(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 304574 304918 . - . gene_id "RvY_06544"; transcript_id "RvY_06544.1"; Scaffold003 rebuild exon 305146 305305 . - . gene_id "RvY_06544"; transcript_id "RvY_06544.1"; Scaffold003 rebuild exon 305387 305517 . - . gene_id "RvY_06544"; transcript_id "RvY_06544.1"; Scaffold003 rebuild exon 305753 305894 . - . gene_id "RvY_06544"; transcript_id "RvY_06544.1"; Scaffold003 rebuild exon 306018 306085 . - . gene_id "RvY_06544"; transcript_id "RvY_06544.1"; Scaffold003 rebuild transcript 308786 311189 . + . gene_id "RvY_06545"; transcript_id "RvY_06545.1"; gene_name "MIP"; annotation "hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms."; Scaffold003 rebuild exon 308786 309307 . + . gene_id "RvY_06545"; transcript_id "RvY_06545.1"; Scaffold003 rebuild exon 309993 310254 . + . gene_id "RvY_06545"; transcript_id "RvY_06545.1"; Scaffold003 rebuild exon 310504 310840 . + . gene_id "RvY_06545"; transcript_id "RvY_06545.1"; Scaffold003 rebuild exon 311042 311189 . + . gene_id "RvY_06545"; transcript_id "RvY_06545.1"; Scaffold003 rebuild transcript 311525 313770 . + . gene_id "RvY_06546"; transcript_id "RvY_06546.1"; gene_name "AARS"; annotation "putative Alanyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA-synt_2c] tRNA synthetases class II (A)"; CDD "alanyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.7"; KO "K01872"; similar_genes "SYAC_BOMMO(e-value:8.1e-49;bit-score:191.0)"; Scaffold003 rebuild exon 311525 312065 . + . gene_id "RvY_06546"; transcript_id "RvY_06546.1"; Scaffold003 rebuild exon 312454 312935 . + . gene_id "RvY_06546"; transcript_id "RvY_06546.1"; Scaffold003 rebuild exon 313210 313770 . + . gene_id "RvY_06546"; transcript_id "RvY_06546.1"; Scaffold003 rebuild transcript 313934 315409 . - . gene_id "RvY_06547"; transcript_id "RvY_06547.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 313934 314068 . - . gene_id "RvY_06547"; transcript_id "RvY_06547.1"; Scaffold003 rebuild exon 315353 315409 . - . gene_id "RvY_06547"; transcript_id "RvY_06547.1"; Scaffold003 rebuild transcript 316438 321454 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; gene_name "PTK7"; annotation "PTK7 protein tyrosine kinase 7 [EC:2.7.10.1]"; Pfam "[I-set] Immunoglobulin I-set domain|[Pkinase] Protein kinase domain|[Ig_2] Immunoglobulin domain|[Pkinase_Tyr] Protein tyrosine kinase|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain"; EC "EC2.7.10.1"; KO "K05127"; similar_genes "PTK7_CHICK(e-value:6.6e-06;bit-score:49.0)"; Scaffold003 rebuild exon 316438 316501 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild exon 317101 317490 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild exon 317804 318340 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild exon 318402 318686 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild exon 318896 319737 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild exon 319909 320681 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild exon 321040 321454 . + . gene_id "RvY_06548"; transcript_id "RvY_06548.1"; Scaffold003 rebuild transcript 323082 324755 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 323082 323300 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.1"; Scaffold003 rebuild exon 323370 323887 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.1"; Scaffold003 rebuild exon 324665 324755 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.1"; Scaffold003 rebuild transcript 322517 323101 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 322517 323101 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.2"; Scaffold003 rebuild transcript 324312 324755 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 324312 324755 . - . gene_id "RvY_06549"; transcript_id "RvY_06549.3"; Scaffold003 rebuild transcript 324756 324962 . - . gene_id "RvY_06550"; transcript_id "RvY_06550.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 324756 324962 . - . gene_id "RvY_06550"; transcript_id "RvY_06550.1"; Scaffold003 rebuild transcript 327649 330493 . - . gene_id "RvY_06551"; transcript_id "RvY_06551.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 327649 327954 . - . gene_id "RvY_06551"; transcript_id "RvY_06551.1"; Scaffold003 rebuild exon 328087 328391 . - . gene_id "RvY_06551"; transcript_id "RvY_06551.1"; Scaffold003 rebuild exon 329022 329614 . - . gene_id "RvY_06551"; transcript_id "RvY_06551.1"; Scaffold003 rebuild exon 329691 330167 . - . gene_id "RvY_06551"; transcript_id "RvY_06551.1"; Scaffold003 rebuild exon 330405 330493 . - . gene_id "RvY_06551"; transcript_id "RvY_06551.1"; Scaffold003 rebuild transcript 332084 332750 . + . gene_id "RvY_06552"; transcript_id "RvY_06552.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 332084 332217 . + . gene_id "RvY_06552"; transcript_id "RvY_06552.1"; Scaffold003 rebuild exon 332294 332750 . + . gene_id "RvY_06552"; transcript_id "RvY_06552.1"; Scaffold003 rebuild transcript 333295 334962 . + . gene_id "RvY_06553"; transcript_id "RvY_06553.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 333295 333341 . + . gene_id "RvY_06553"; transcript_id "RvY_06553.1"; Scaffold003 rebuild exon 333744 334076 . + . gene_id "RvY_06553"; transcript_id "RvY_06553.1"; Scaffold003 rebuild exon 334158 334962 . + . gene_id "RvY_06553"; transcript_id "RvY_06553.1"; Scaffold003 rebuild transcript 337448 337651 . + . gene_id "RvY_06554"; transcript_id "RvY_06554.1"; annotation "hypothetical protein."; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; Scaffold003 rebuild exon 337448 337651 . + . gene_id "RvY_06554"; transcript_id "RvY_06554.1"; Scaffold003 rebuild transcript 337785 338521 . + . gene_id "RvY_06555"; transcript_id "RvY_06555.1"; gene_name "RBMX2"; annotation "putative RNA-binding motif protein, X-linked 2"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold003 rebuild exon 337785 337957 . + . gene_id "RvY_06555"; transcript_id "RvY_06555.1"; Scaffold003 rebuild exon 338026 338521 . + . gene_id "RvY_06555"; transcript_id "RvY_06555.1"; Scaffold003 rebuild transcript 339312 341079 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; annotation "hypothetical protein."; Pfam "[Fasciclin]"; Scaffold003 rebuild exon 339312 339618 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; Scaffold003 rebuild exon 339809 340038 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; Scaffold003 rebuild exon 340108 340303 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; Scaffold003 rebuild exon 340372 340470 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; Scaffold003 rebuild exon 340729 340851 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; Scaffold003 rebuild exon 340919 341079 . + . gene_id "RvY_06556"; transcript_id "RvY_06556.1"; Scaffold003 rebuild transcript 341614 342364 . - . gene_id "RvY_06557"; transcript_id "RvY_06557.1"; annotation "hypothetical protein."; Pfam "[CD20] CD20-like family"; Scaffold003 rebuild exon 341614 341808 . - . gene_id "RvY_06557"; transcript_id "RvY_06557.1"; Scaffold003 rebuild exon 341898 342178 . - . gene_id "RvY_06557"; transcript_id "RvY_06557.1"; Scaffold003 rebuild exon 342289 342364 . - . gene_id "RvY_06557"; transcript_id "RvY_06557.1"; Scaffold003 rebuild transcript 342303 342560 . + . gene_id "RvY_06558"; transcript_id "RvY_06558.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 342303 342560 . + . gene_id "RvY_06558"; transcript_id "RvY_06558.1"; Scaffold003 rebuild transcript 344538 349003 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; gene_name "K00504"; annotation "peptidylglycine monooxygenase [EC:1.14.17.3]"; Pfam "[NHL] NHL repeat|[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; EC "EC1.14.17.3|EC4.3.2.5"; KO "K00504"; similar_genes "PAL2_DROME(e-value:6.2e-15;bit-score:79.0)"; Scaffold003 rebuild exon 344538 344953 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 345096 345314 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 345743 346120 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 346186 346298 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 346383 346538 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 346626 346713 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 346792 347259 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 347326 347673 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 347950 348135 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 348276 348473 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild exon 348820 349003 . - . gene_id "RvY_06559"; transcript_id "RvY_06559.1"; Scaffold003 rebuild transcript 350580 350969 . - . gene_id "RvY_06560"; transcript_id "RvY_06560.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 350580 350969 . - . gene_id "RvY_06560"; transcript_id "RvY_06560.1"; Scaffold003 rebuild transcript 351777 352061 . - . gene_id "RvY_06561"; transcript_id "RvY_06561.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 351777 352061 . - . gene_id "RvY_06561"; transcript_id "RvY_06561.1"; Scaffold003 rebuild transcript 352534 352830 . - . gene_id "RvY_06562"; transcript_id "RvY_06562.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 352534 352830 . - . gene_id "RvY_06562"; transcript_id "RvY_06562.1"; Scaffold003 rebuild transcript 354425 355440 . + . gene_id "RvY_06563"; transcript_id "RvY_06563.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 354425 354605 . + . gene_id "RvY_06563"; transcript_id "RvY_06563.1"; Scaffold003 rebuild exon 354866 355440 . + . gene_id "RvY_06563"; transcript_id "RvY_06563.1"; Scaffold003 rebuild transcript 355795 357042 . - . gene_id "RvY_06564"; transcript_id "RvY_06564.1"; annotation "hypothetical protein."; Pfam "[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 355795 357042 . - . gene_id "RvY_06564"; transcript_id "RvY_06564.1"; Scaffold003 rebuild transcript 357500 358258 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 357500 357595 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.1"; Scaffold003 rebuild exon 357655 357760 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.1"; Scaffold003 rebuild exon 357963 358176 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.1"; Scaffold003 rebuild exon 358234 358258 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.1"; Scaffold003 rebuild transcript 357500 358180 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 357500 357595 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.2"; Scaffold003 rebuild exon 357655 357760 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.2"; Scaffold003 rebuild exon 357963 358180 . + . gene_id "RvY_06565"; transcript_id "RvY_06565.2"; Scaffold003 rebuild transcript 358368 361382 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; annotation "hypothetical protein."; Pfam "[Apc4] Anaphase-promoting complex, cyclosome, subunit 4"; Scaffold003 rebuild exon 358368 358390 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 358468 358573 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 358641 359143 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 359318 359471 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 359555 359871 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 360317 360748 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 360838 361014 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 361098 361179 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild exon 361257 361382 . + . gene_id "RvY_06566"; transcript_id "RvY_06566.1"; Scaffold003 rebuild transcript 364286 364750 . + . gene_id "RvY_06567"; transcript_id "RvY_06567.1"; annotation "hypothetical protein."; Pfam "[zf-CCHC] Zinc knuckle"; Scaffold003 rebuild exon 364286 364750 . + . gene_id "RvY_06567"; transcript_id "RvY_06567.1"; Scaffold003 rebuild transcript 365184 365369 . - . gene_id "RvY_06568"; transcript_id "RvY_06568.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 365184 365369 . - . gene_id "RvY_06568"; transcript_id "RvY_06568.1"; Scaffold003 rebuild transcript 365837 366235 . + . gene_id "RvY_06569"; transcript_id "RvY_06569.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc3_2] Transposase"; Scaffold003 rebuild exon 365837 366235 . + . gene_id "RvY_06569"; transcript_id "RvY_06569.1"; Scaffold003 rebuild transcript 366351 366575 . + . gene_id "RvY_06570"; transcript_id "RvY_06570.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 366351 366575 . + . gene_id "RvY_06570"; transcript_id "RvY_06570.1"; Scaffold003 rebuild transcript 367650 367970 . - . gene_id "RvY_06571"; transcript_id "RvY_06571.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 367650 367970 . - . gene_id "RvY_06571"; transcript_id "RvY_06571.1"; Scaffold003 rebuild transcript 369417 371393 . - . gene_id "RvY_06572"; transcript_id "RvY_06572.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 369417 369523 . - . gene_id "RvY_06572"; transcript_id "RvY_06572.1"; Scaffold003 rebuild exon 369624 370075 . - . gene_id "RvY_06572"; transcript_id "RvY_06572.1"; Scaffold003 rebuild exon 370297 370961 . - . gene_id "RvY_06572"; transcript_id "RvY_06572.1"; Scaffold003 rebuild exon 371316 371393 . - . gene_id "RvY_06572"; transcript_id "RvY_06572.1"; Scaffold003 rebuild transcript 373834 375155 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.1"; gene_name "ENTH_epsin"; annotation "hypothetical protein."; Pfam "(2)[ANTH]|[ENTH]"; CDD "ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding."; Scaffold003 rebuild exon 373834 374218 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.1"; Scaffold003 rebuild exon 374288 374746 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.1"; Scaffold003 rebuild exon 374830 375155 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.1"; Scaffold003 rebuild transcript 374284 375155 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.2"; gene_name "ENTH_epsin"; annotation "hypothetical protein."; Pfam "(2)[ANTH]|[ENTH]"; CDD "ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding."; Scaffold003 rebuild exon 374284 374746 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.2"; Scaffold003 rebuild exon 374830 375155 . - . gene_id "RvY_06573"; transcript_id "RvY_06573.2"; Scaffold003 rebuild transcript 377057 377619 . - . gene_id "RvY_06574"; transcript_id "RvY_06574.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 377057 377293 . - . gene_id "RvY_06574"; transcript_id "RvY_06574.1"; Scaffold003 rebuild exon 377425 377619 . - . gene_id "RvY_06574"; transcript_id "RvY_06574.1"; Scaffold003 rebuild transcript 378193 385257 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; gene_name "ABCA5"; annotation "putative ABC transporter A family member 11"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[AAA_23] AAA domain|[ABC2_membrane_3] ABC-2 family transporter protein|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease."; KO "K05648"; similar_genes "AB11A_ARATH(e-value:1.6e-30;bit-score:130.0)"; Scaffold003 rebuild exon 378193 378324 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 378420 379152 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 379228 379658 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 379822 379972 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 380362 382469 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 382541 382774 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 382842 383048 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 383122 383287 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 383375 383424 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 383502 383695 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 383903 383978 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 384250 384703 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild exon 385070 385257 . + . gene_id "RvY_06575"; transcript_id "RvY_06575.1"; Scaffold003 rebuild transcript 385434 386648 . - . gene_id "RvY_06576"; transcript_id "RvY_06576.1"; annotation "hypothetical protein."; Pfam "[FR47] FR47-like protein"; Scaffold003 rebuild exon 385434 385890 . - . gene_id "RvY_06576"; transcript_id "RvY_06576.1"; Scaffold003 rebuild exon 385958 386199 . - . gene_id "RvY_06576"; transcript_id "RvY_06576.1"; Scaffold003 rebuild exon 386301 386648 . - . gene_id "RvY_06576"; transcript_id "RvY_06576.1"; Scaffold003 rebuild transcript 387498 389562 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.1"; gene_name "DUF659"; annotation "hypothetical protein."; Pfam "[DUF659] Protein of unknown function (DUF 659)"; CDD "Protein of unknown function (DUF 659). Transposase-like protein with no known function."; Scaffold003 rebuild exon 387498 387786 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.1"; Scaffold003 rebuild exon 387854 388347 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.1"; Scaffold003 rebuild exon 388451 389276 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.1"; Scaffold003 rebuild exon 389393 389562 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.1"; Scaffold003 rebuild transcript 387826 389562 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.2"; gene_name "DUF659"; annotation "hypothetical protein."; Pfam "[DUF659] Protein of unknown function (DUF 659)"; CDD "Protein of unknown function (DUF 659). Transposase-like protein with no known function."; Scaffold003 rebuild exon 387826 388347 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.2"; Scaffold003 rebuild exon 388451 389276 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.2"; Scaffold003 rebuild exon 389393 389562 . + . gene_id "RvY_06577"; transcript_id "RvY_06577.2"; Scaffold003 rebuild transcript 393997 395735 . - . gene_id "RvY_06578"; transcript_id "RvY_06578.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 393997 394305 . - . gene_id "RvY_06578"; transcript_id "RvY_06578.1"; Scaffold003 rebuild exon 395222 395350 . - . gene_id "RvY_06578"; transcript_id "RvY_06578.1"; Scaffold003 rebuild exon 395652 395735 . - . gene_id "RvY_06578"; transcript_id "RvY_06578.1"; Scaffold003 rebuild transcript 393997 394314 . - . gene_id "RvY_06578"; transcript_id "RvY_06578.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 393997 394314 . - . gene_id "RvY_06578"; transcript_id "RvY_06578.2"; Scaffold003 rebuild transcript 398748 398984 . + . gene_id "RvY_06579"; transcript_id "RvY_06579.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 398748 398984 . + . gene_id "RvY_06579"; transcript_id "RvY_06579.1"; Scaffold003 rebuild transcript 400017 400714 . - . gene_id "RvY_06580"; transcript_id "RvY_06580.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 400017 400450 . - . gene_id "RvY_06580"; transcript_id "RvY_06580.1"; Scaffold003 rebuild exon 400468 400714 . - . gene_id "RvY_06580"; transcript_id "RvY_06580.1"; Scaffold003 rebuild transcript 400914 401335 . - . gene_id "RvY_06581"; transcript_id "RvY_06581.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 400914 401156 . - . gene_id "RvY_06581"; transcript_id "RvY_06581.1"; Scaffold003 rebuild exon 401324 401335 . - . gene_id "RvY_06581"; transcript_id "RvY_06581.1"; Scaffold003 rebuild transcript 401596 402267 . - . gene_id "RvY_06582"; transcript_id "RvY_06582.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold003 rebuild exon 401596 401786 . - . gene_id "RvY_06582"; transcript_id "RvY_06582.1"; Scaffold003 rebuild exon 401934 402267 . - . gene_id "RvY_06582"; transcript_id "RvY_06582.1"; Scaffold003 rebuild transcript 404441 406718 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 404441 404626 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; Scaffold003 rebuild exon 404690 404839 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; Scaffold003 rebuild exon 404904 405579 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; Scaffold003 rebuild exon 405634 405762 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; Scaffold003 rebuild exon 405858 406387 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; Scaffold003 rebuild exon 406590 406718 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.1"; Scaffold003 rebuild transcript 404639 406718 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 404639 404839 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.2"; Scaffold003 rebuild exon 404904 405579 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.2"; Scaffold003 rebuild exon 405634 405762 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.2"; Scaffold003 rebuild exon 405858 406387 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.2"; Scaffold003 rebuild exon 406590 406718 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.2"; Scaffold003 rebuild transcript 404441 406369 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.3"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 404441 404626 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.3"; Scaffold003 rebuild exon 404690 404839 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.3"; Scaffold003 rebuild exon 404904 405579 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.3"; Scaffold003 rebuild exon 405634 405762 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.3"; Scaffold003 rebuild exon 405858 406369 . - . gene_id "RvY_06583"; transcript_id "RvY_06583.3"; Scaffold003 rebuild transcript 407978 408832 . - . gene_id "RvY_06584"; transcript_id "RvY_06584.1"; annotation "hypothetical protein."; Pfam "[NDUFA12] NADH ubiquinone oxidoreductase subunit NDUFA12"; Scaffold003 rebuild exon 407978 408081 . - . gene_id "RvY_06584"; transcript_id "RvY_06584.1"; Scaffold003 rebuild exon 408158 408296 . - . gene_id "RvY_06584"; transcript_id "RvY_06584.1"; Scaffold003 rebuild exon 408440 408480 . - . gene_id "RvY_06584"; transcript_id "RvY_06584.1"; Scaffold003 rebuild exon 408540 408626 . - . gene_id "RvY_06584"; transcript_id "RvY_06584.1"; Scaffold003 rebuild exon 408694 408832 . - . gene_id "RvY_06584"; transcript_id "RvY_06584.1"; Scaffold003 rebuild transcript 409268 410865 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; gene_name "AceF"; annotation "hypothetical protein."; Pfam "[E3_binding] e3 binding domain|[2-oxoacid_dh] 2-oxoacid dehydrogenases acyltransferase (catalytic domain)"; CDD "Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]"; Scaffold003 rebuild exon 409268 409313 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; Scaffold003 rebuild exon 409376 409451 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; Scaffold003 rebuild exon 409506 409601 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; Scaffold003 rebuild exon 409666 409882 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; Scaffold003 rebuild exon 409948 410279 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; Scaffold003 rebuild exon 410553 410865 . + . gene_id "RvY_06585"; transcript_id "RvY_06585.1"; Scaffold003 rebuild transcript 411143 416110 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; annotation "hypothetical protein."; Pfam "[PIH1] pre-RNA processing PIH1/Nop17"; similar_genes "PIHD1_DANRE(e-value:9.2e-14;bit-score:75.0)"; Scaffold003 rebuild exon 411143 411208 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 411311 411469 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 411542 411680 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 411774 412014 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 412072 412189 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 415687 415754 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 415824 415974 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild exon 416036 416110 . - . gene_id "RvY_06586"; transcript_id "RvY_06586.1"; Scaffold003 rebuild transcript 414157 414318 . + . gene_id "RvY_06587"; transcript_id "RvY_06587.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 414157 414318 . + . gene_id "RvY_06587"; transcript_id "RvY_06587.1"; Scaffold003 rebuild transcript 414539 414775 . + . gene_id "RvY_06588"; transcript_id "RvY_06588.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 414539 414775 . + . gene_id "RvY_06588"; transcript_id "RvY_06588.1"; Scaffold003 rebuild transcript 416498 419120 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; Scaffold003 rebuild exon 416498 416965 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; Scaffold003 rebuild exon 417125 417922 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; Scaffold003 rebuild exon 418227 418506 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; Scaffold003 rebuild exon 418575 418705 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; Scaffold003 rebuild exon 418765 418856 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; Scaffold003 rebuild exon 419048 419120 . + . gene_id "RvY_06589"; transcript_id "RvY_06589.1"; Scaffold003 rebuild transcript 420193 422019 . + . gene_id "RvY_06590"; transcript_id "RvY_06590.1"; gene_name "PRK13808"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; CDD "adenylate kinase; Provisional"; Scaffold003 rebuild exon 420193 420496 . + . gene_id "RvY_06590"; transcript_id "RvY_06590.1"; Scaffold003 rebuild exon 420566 420977 . + . gene_id "RvY_06590"; transcript_id "RvY_06590.1"; Scaffold003 rebuild exon 421500 422019 . + . gene_id "RvY_06590"; transcript_id "RvY_06590.1"; Scaffold003 rebuild transcript 433970 438055 . + . gene_id "RvY_06591"; transcript_id "RvY_06591.1"; product "EcRA3"; gene_name "NR1H3"; annotation "EcRA3 | nuclear receptor, subfamily 1, group H, member 3"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain (LBD) of the Ecdysone receptor, a member of the nuclear receptors super family. The ligand binding domain (LBD) of the ecdysone receptor: The ecdysone receptor (EcR) belongs to the superfamily of nuclear receptors (NRs) of ligand-dependent transcription factors. Ecdysone receptor is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. ECR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of ecdysone receptor are ecdysteroids#the endogenous steroidal hormones found in invertebrates. In addition, insecticide bisacylhydrazine used against pests has shown to act on EcR. EcR must be dimerised with a USP for high-affinity ligand binding to occur. The ligand binding triggers a conformational change in the C-terminal part of the EcR ligand-binding domain that leads to transcriptional activation of genes controlled by EcR. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ec dysone receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; KO "K08536"; similar_genes "ECR_MANSE(e-value:8.1e-15;bit-score:78.0)"; Scaffold003 rebuild exon 433970 434534 . + . gene_id "RvY_06591"; transcript_id "RvY_06591.1"; Scaffold003 rebuild exon 434778 435032 . + . gene_id "RvY_06591"; transcript_id "RvY_06591.1"; Scaffold003 rebuild exon 437508 438055 . + . gene_id "RvY_06591"; transcript_id "RvY_06591.1"; Scaffold003 rebuild transcript 441768 442832 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.1"; gene_name "Rab"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; similar_genes "RBD2A_ARATH(e-value:7.4e-20;bit-score:95.0)"; Scaffold003 rebuild exon 441768 441869 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.1"; Scaffold003 rebuild exon 442023 442171 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.1"; Scaffold003 rebuild exon 442385 442832 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.1"; Scaffold003 rebuild transcript 441966 442832 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.2"; gene_name "Rab"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; similar_genes "RBD2A_ARATH(e-value:7.4e-20;bit-score:95.0)"; Scaffold003 rebuild exon 441966 442171 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.2"; Scaffold003 rebuild exon 442385 442832 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.2"; Scaffold003 rebuild transcript 442377 442832 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.3"; gene_name "Rab"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; similar_genes "RBD2A_ARATH(e-value:7.4e-20;bit-score:95.0)"; Scaffold003 rebuild exon 442377 442832 . - . gene_id "RvY_06592"; transcript_id "RvY_06592.3"; Scaffold003 rebuild transcript 444494 446256 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; gene_name "(1)POLK(2)Pol_IV_kappa"; annotation "(1)putative DNA polymerase kappa(2)hypothetical protein."; Pfam "(1)[IMS_HHH] IMS family HHH motif|(1)[IMS] impB/mucB/samB family|(2)[IMS_C] impB/mucB/samB family C-terminal"; CDD "(1)DNA polymerase IV; Validated(2)Pol_IV_kappa, a member of the Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'->5' exonuclease activity. In addition to possessing a topology akin to a right hand, with ""thumb"", ""fingers"" and ""palm"" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique ""little finger"" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases. Originally called the DinB family, they belong to the recently described Y-family of DNA polymerases. Pol IV is mostly found in bacteria and archaea. Although the structure of Pol IV is similar to that of Pol eta, it shows markedly differenct efficiencies and fidelities in bypassing various DNA lesions. All Pol IV-like polymerases studied to date are able to bypass an abasic site, and the resulting daughter strand is often 1 nt shorter than the template. They tend to slip along the DNA template and result in deletion mutations. Pol IV has higher error rate than other members of the Y-family. Member of the DNA polymerase Y-family. Expression of Y-family polymerases is often induced by DNA damage. Y-family polymerases are characterized by low fidelity replication using undamaged template and the ability to carry out translesion DNA synthesis. Pol kappa is the eukaryotic DinB homologue and is able to bypass abasic and bulky DNA adduct lesions and make both base-substitution and frame-shift mutation"; EC "(1)EC2.7.7.7"; KO "(1)K03511"; similar_genes "(1)POLK_MOUSE(e-value:2.6e-43;bit-score:173.0)"; Scaffold003 rebuild exon 444494 444727 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; Scaffold003 rebuild exon 444922 445066 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; Scaffold003 rebuild exon 445143 445641 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; Scaffold003 rebuild exon 445710 445815 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; Scaffold003 rebuild exon 445911 446000 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; Scaffold003 rebuild exon 446113 446256 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.1"; Scaffold003 rebuild transcript 446149 447084 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.2"; gene_name "(1)POLK(2)Pol_IV_kappa"; annotation "(1)putative DNA polymerase kappa(2)hypothetical protein."; Pfam "(1)[IMS_HHH] IMS family HHH motif|(1)[IMS] impB/mucB/samB family|(2)[IMS_C] impB/mucB/samB family C-terminal"; CDD "(1)DNA polymerase IV; Validated(2)Pol_IV_kappa, a member of the Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'->5' exonuclease activity. In addition to possessing a topology akin to a right hand, with ""thumb"", ""fingers"" and ""palm"" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique ""little finger"" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases. Originally called the DinB family, they belong to the recently described Y-family of DNA polymerases. Pol IV is mostly found in bacteria and archaea. Although the structure of Pol IV is similar to that of Pol eta, it shows markedly differenct efficiencies and fidelities in bypassing various DNA lesions. All Pol IV-like polymerases studied to date are able to bypass an abasic site, and the resulting daughter strand is often 1 nt shorter than the template. They tend to slip along the DNA template and result in deletion mutations. Pol IV has higher error rate than other members of the Y-family. Member of the DNA polymerase Y-family. Expression of Y-family polymerases is often induced by DNA damage. Y-family polymerases are characterized by low fidelity replication using undamaged template and the ability to carry out translesion DNA synthesis. Pol kappa is the eukaryotic DinB homologue and is able to bypass abasic and bulky DNA adduct lesions and make both base-substitution and frame-shift mutation"; EC "(1)EC2.7.7.7"; KO "(1)K03511"; similar_genes "(1)POLK_MOUSE(e-value:2.6e-43;bit-score:173.0)"; Scaffold003 rebuild exon 446149 446222 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.2"; Scaffold003 rebuild exon 446284 446380 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.2"; Scaffold003 rebuild exon 446458 447084 . + . gene_id "RvY_06593"; transcript_id "RvY_06593.2"; Scaffold003 rebuild transcript 450605 454523 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.-"; similar_genes "NEPL2_CAEEL(e-value:1.5e-22;bit-score:104.0)"; Scaffold003 rebuild exon 450605 450735 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 450928 451031 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 451123 451150 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 451239 451471 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 451587 452023 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 452248 452510 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 452585 452807 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 452883 452933 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 453011 453139 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 453200 453359 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 453432 453551 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 453636 453826 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 453955 454033 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 454139 454167 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 454252 454300 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild exon 454399 454523 . + . gene_id "RvY_06594"; transcript_id "RvY_06594.2"; Scaffold003 rebuild transcript 455401 455625 . + . gene_id "RvY_06595"; transcript_id "RvY_06595.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 455401 455625 . + . gene_id "RvY_06595"; transcript_id "RvY_06595.1"; Scaffold003 rebuild transcript 456325 457089 . + . gene_id "RvY_06596"; transcript_id "RvY_06596.1"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold003 rebuild exon 456325 456363 . + . gene_id "RvY_06596"; transcript_id "RvY_06596.1"; Scaffold003 rebuild exon 456496 456772 . + . gene_id "RvY_06596"; transcript_id "RvY_06596.1"; Scaffold003 rebuild exon 456926 457089 . + . gene_id "RvY_06596"; transcript_id "RvY_06596.1"; Scaffold003 rebuild transcript 459804 461000 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; gene_name "PARK7"; annotation "protein DJ-1"; Pfam "[DJ-1_PfpI] DJ-1/PfpI family|[DUF4066] Putative amidotransferase"; CDD "DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus."; KO "K05687"; similar_genes "PARK7_MOUSE(e-value:1.6e-17;bit-score:87.0)"; Scaffold003 rebuild exon 459804 459958 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; Scaffold003 rebuild exon 460047 460200 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; Scaffold003 rebuild exon 460469 460500 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; Scaffold003 rebuild exon 460561 460696 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; Scaffold003 rebuild exon 460771 460800 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; Scaffold003 rebuild exon 460872 461000 . - . gene_id "RvY_06597"; transcript_id "RvY_06597.1"; Scaffold003 rebuild transcript 462477 468767 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[DUF3250]"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 462477 462574 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 462648 462854 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 463080 464292 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 464369 464680 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 464851 465078 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 465146 465517 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 465788 466195 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 466512 466889 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 467133 467279 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 467389 467724 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 467956 468082 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 468165 468309 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild exon 468632 468767 . - . gene_id "RvY_06598"; transcript_id "RvY_06598.1"; Scaffold003 rebuild transcript 469681 472084 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; gene_name "PLRG1"; annotation "Pleiotropic regulator 1"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K12862"; similar_genes "PLRG1_MOUSE(e-value:1.3e-146;bit-score:516.0)"; Scaffold003 rebuild exon 469681 469740 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 469823 470016 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 470160 470299 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 470367 470578 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 470641 470742 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 470822 470971 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 471115 471207 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 471268 471363 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 471431 471500 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 471583 471643 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 471703 471821 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild exon 471888 472084 . - . gene_id "RvY_06599"; transcript_id "RvY_06599.1"; Scaffold003 rebuild transcript 472625 477340 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; gene_name "MBT"; annotation "hypothetical protein."; Pfam "[zf-C2HC] Zinc finger, C2HC type|[MBT] mbt repeat"; CDD "Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation."; similar_genes "LMBL3_MOUSE(e-value:5.7e-22;bit-score:102.0)"; Scaffold003 rebuild exon 472625 472688 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 472749 472884 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 472995 473191 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 473252 473409 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 473482 473677 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 473750 473835 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 473944 474181 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 474418 474839 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 475244 475493 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 475559 475661 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 475868 476338 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 476558 476936 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild exon 477194 477340 . + . gene_id "RvY_06600"; transcript_id "RvY_06600.1"; Scaffold003 rebuild transcript 480725 482707 . + . gene_id "RvY_06601"; transcript_id "RvY_06601.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 480725 481066 . + . gene_id "RvY_06601"; transcript_id "RvY_06601.1"; Scaffold003 rebuild exon 482570 482707 . + . gene_id "RvY_06601"; transcript_id "RvY_06601.1"; Scaffold003 rebuild transcript 486634 486879 . + . gene_id "RvY_06602"; transcript_id "RvY_06602.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 486634 486879 . + . gene_id "RvY_06602"; transcript_id "RvY_06602.1"; Scaffold003 rebuild transcript 487035 487259 . + . gene_id "RvY_06603"; transcript_id "RvY_06603.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 487035 487259 . + . gene_id "RvY_06603"; transcript_id "RvY_06603.1"; Scaffold003 rebuild transcript 489781 492274 . - . gene_id "RvY_06604"; transcript_id "RvY_06604.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold003 rebuild exon 489781 490092 . - . gene_id "RvY_06604"; transcript_id "RvY_06604.1"; Scaffold003 rebuild exon 490833 491122 . - . gene_id "RvY_06604"; transcript_id "RvY_06604.1"; Scaffold003 rebuild exon 491734 492274 . - . gene_id "RvY_06604"; transcript_id "RvY_06604.1"; Scaffold003 rebuild transcript 492586 494413 . - . gene_id "RvY_06605"; transcript_id "RvY_06605.1"; annotation "hypothetical protein."; Pfam "[Calcipressin]"; similar_genes "SRA_DROME(e-value:3.6e-13;bit-score:73.0)"; Scaffold003 rebuild exon 492586 492803 . - . gene_id "RvY_06605"; transcript_id "RvY_06605.1"; Scaffold003 rebuild exon 493061 493229 . - . gene_id "RvY_06605"; transcript_id "RvY_06605.1"; Scaffold003 rebuild exon 493797 493970 . - . gene_id "RvY_06605"; transcript_id "RvY_06605.1"; Scaffold003 rebuild exon 494222 494413 . - . gene_id "RvY_06605"; transcript_id "RvY_06605.1"; Scaffold003 rebuild transcript 495642 499444 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; gene_name "EZH"; annotation "putative Histone-lysine N-methyltransferase EZH1"; Pfam "[SET]"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; EC "EC2.1.1.43"; KO "K11430"; similar_genes "EZH1_BOVIN(e-value:5.3e-29;bit-score:125.0)"; Scaffold003 rebuild exon 495642 496816 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; Scaffold003 rebuild exon 496937 497396 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; Scaffold003 rebuild exon 497658 497925 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; Scaffold003 rebuild exon 498232 498524 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; Scaffold003 rebuild exon 498590 498943 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; Scaffold003 rebuild exon 499184 499444 . + . gene_id "RvY_06606"; transcript_id "RvY_06606.1"; Scaffold003 rebuild transcript 500134 502228 . + . gene_id "RvY_06607"; transcript_id "RvY_06607.1"; annotation "hypothetical protein."; Pfam "[Sad1_UNC] Sad1 / UNC-like C-terminal"; Scaffold003 rebuild exon 500134 500296 . + . gene_id "RvY_06607"; transcript_id "RvY_06607.1"; Scaffold003 rebuild exon 500572 500938 . + . gene_id "RvY_06607"; transcript_id "RvY_06607.1"; Scaffold003 rebuild exon 501016 501325 . + . gene_id "RvY_06607"; transcript_id "RvY_06607.1"; Scaffold003 rebuild exon 501514 501912 . + . gene_id "RvY_06607"; transcript_id "RvY_06607.1"; Scaffold003 rebuild exon 501980 502228 . + . gene_id "RvY_06607"; transcript_id "RvY_06607.1"; Scaffold003 rebuild transcript 502424 504274 . + . gene_id "RvY_06608"; transcript_id "RvY_06608.1"; gene_name "adk"; annotation "adenylate kinase [EC:2.7.4.3]"; Pfam "[ADK] Adenylate kinase|[AAA_18] AAA domain|[AAA_17] AAA domain"; CDD "Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates."; EC "EC2.7.4.3"; KO "K00939"; Scaffold003 rebuild exon 502424 502462 . + . gene_id "RvY_06608"; transcript_id "RvY_06608.1"; Scaffold003 rebuild exon 502557 502956 . + . gene_id "RvY_06608"; transcript_id "RvY_06608.1"; Scaffold003 rebuild exon 503036 503251 . + . gene_id "RvY_06608"; transcript_id "RvY_06608.1"; Scaffold003 rebuild exon 503474 503698 . + . gene_id "RvY_06608"; transcript_id "RvY_06608.1"; Scaffold003 rebuild exon 503772 504274 . + . gene_id "RvY_06608"; transcript_id "RvY_06608.1"; Scaffold003 rebuild transcript 504441 505680 . - . gene_id "RvY_06609"; transcript_id "RvY_06609.1"; annotation "hypothetical protein."; Pfam "[GLTP] Glycolipid transfer protein (GLTP)"; Scaffold003 rebuild exon 504441 504642 . - . gene_id "RvY_06609"; transcript_id "RvY_06609.1"; Scaffold003 rebuild exon 504701 505036 . - . gene_id "RvY_06609"; transcript_id "RvY_06609.1"; Scaffold003 rebuild exon 505314 505593 . - . gene_id "RvY_06609"; transcript_id "RvY_06609.1"; Scaffold003 rebuild exon 505656 505680 . - . gene_id "RvY_06609"; transcript_id "RvY_06609.1"; Scaffold003 rebuild transcript 506219 507995 . + . gene_id "RvY_06610"; transcript_id "RvY_06610.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; similar_genes "TXTP_RAT(e-value:2.9e-23;bit-score:106.0)"; Scaffold003 rebuild exon 506219 506453 . + . gene_id "RvY_06610"; transcript_id "RvY_06610.1"; Scaffold003 rebuild exon 506748 506841 . + . gene_id "RvY_06610"; transcript_id "RvY_06610.1"; Scaffold003 rebuild exon 506905 507233 . + . gene_id "RvY_06610"; transcript_id "RvY_06610.1"; Scaffold003 rebuild exon 507521 507815 . + . gene_id "RvY_06610"; transcript_id "RvY_06610.1"; Scaffold003 rebuild exon 507878 507995 . + . gene_id "RvY_06610"; transcript_id "RvY_06610.1"; Scaffold003 rebuild transcript 508306 509443 . - . gene_id "RvY_06611"; transcript_id "RvY_06611.1"; annotation "putative Tricarboxylate transport protein, mitochondrial"; Pfam "[Mito_carr] Mitochondrial carrier protein"; similar_genes "TXTP_HUMAN(e-value:3.6e-49;bit-score:192.0)"; Scaffold003 rebuild exon 508306 508411 . - . gene_id "RvY_06611"; transcript_id "RvY_06611.1"; Scaffold003 rebuild exon 508476 508770 . - . gene_id "RvY_06611"; transcript_id "RvY_06611.1"; Scaffold003 rebuild exon 508958 509289 . - . gene_id "RvY_06611"; transcript_id "RvY_06611.1"; Scaffold003 rebuild exon 509355 509443 . - . gene_id "RvY_06611"; transcript_id "RvY_06611.1"; Scaffold003 rebuild transcript 511089 512728 . + . gene_id "RvY_06612"; transcript_id "RvY_06612.1"; gene_name "obg"; annotation "putative GTP-binding protein 5"; Pfam "[FeoB_N] Ferrous iron transport protein B|[GTP1_OBG] GTP1/OBG|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal."; KO "K03979"; similar_genes "GTPB5_PONAB(e-value:5.4e-50;bit-score:195.0)"; Scaffold003 rebuild exon 511089 511232 . + . gene_id "RvY_06612"; transcript_id "RvY_06612.1"; Scaffold003 rebuild exon 511325 511472 . + . gene_id "RvY_06612"; transcript_id "RvY_06612.1"; Scaffold003 rebuild exon 511628 511965 . + . gene_id "RvY_06612"; transcript_id "RvY_06612.1"; Scaffold003 rebuild exon 512104 512272 . + . gene_id "RvY_06612"; transcript_id "RvY_06612.1"; Scaffold003 rebuild exon 512340 512728 . + . gene_id "RvY_06612"; transcript_id "RvY_06612.1"; Scaffold003 rebuild transcript 513685 518125 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; annotation "hypothetical protein."; Pfam "[wnt] wnt family"; similar_genes "WNT16_BOVIN(e-value:1.8e-14;bit-score:77.0)"; Scaffold003 rebuild exon 513685 513719 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild exon 513815 514131 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild exon 514542 514828 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild exon 515306 515582 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild exon 515639 515734 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild exon 516601 517575 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild exon 517743 518125 . + . gene_id "RvY_06613"; transcript_id "RvY_06613.1"; Scaffold003 rebuild transcript 521727 527512 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; gene_name "2a30"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease"; CDD "K-Cl cotransporter."; similar_genes "S12A3_PSEAM(e-value:1.1e-20;bit-score:98.0)"; Scaffold003 rebuild exon 521727 522116 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 522474 522926 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 523190 523658 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 523746 523888 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 524108 524265 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 524339 524849 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 524907 525030 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 525258 525359 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 525452 525790 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 525848 526237 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 526418 526793 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 527108 527233 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild exon 527329 527512 . + . gene_id "RvY_06614"; transcript_id "RvY_06614.1"; Scaffold003 rebuild transcript 529264 530188 . - . gene_id "RvY_06615"; transcript_id "RvY_06615.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 529264 529656 . - . gene_id "RvY_06615"; transcript_id "RvY_06615.1"; Scaffold003 rebuild exon 529847 530188 . - . gene_id "RvY_06615"; transcript_id "RvY_06615.1"; Scaffold003 rebuild transcript 531146 531863 . + . gene_id "RvY_06616"; transcript_id "RvY_06616.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 531146 531487 . + . gene_id "RvY_06616"; transcript_id "RvY_06616.1"; Scaffold003 rebuild exon 531558 531863 . + . gene_id "RvY_06616"; transcript_id "RvY_06616.1"; Scaffold003 rebuild transcript 537532 542759 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; gene_name "COG3735"; annotation "putative UPF0632 protein A"; Pfam "[TraB] TraB family"; CDD "Uncharacterized protein conserved in bacteria [Function unknown]"; similar_genes "U632A_MOUSE(e-value:1.6e-28;bit-score:124.0)"; Scaffold003 rebuild exon 537532 537727 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; Scaffold003 rebuild exon 537818 538135 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; Scaffold003 rebuild exon 538353 538443 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; Scaffold003 rebuild exon 538559 538895 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; Scaffold003 rebuild exon 541853 542515 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; Scaffold003 rebuild exon 542682 542759 . - . gene_id "RvY_06617"; transcript_id "RvY_06617.1"; Scaffold003 rebuild transcript 545680 545886 . - . gene_id "RvY_06618"; transcript_id "RvY_06618.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 545680 545886 . - . gene_id "RvY_06618"; transcript_id "RvY_06618.1"; Scaffold003 rebuild transcript 547758 548162 . + . gene_id "RvY_06619"; transcript_id "RvY_06619.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 547758 548162 . + . gene_id "RvY_06619"; transcript_id "RvY_06619.1"; Scaffold003 rebuild transcript 548185 550122 . + . gene_id "RvY_06620"; transcript_id "RvY_06620.1"; gene_name "IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold003 rebuild exon 548185 550122 . + . gene_id "RvY_06620"; transcript_id "RvY_06620.1"; Scaffold003 rebuild transcript 551588 552797 . + . gene_id "RvY_06621"; transcript_id "RvY_06621.1"; annotation "hypothetical protein."; Pfam "[Amidohydro_2] Amidohydrolase"; Scaffold003 rebuild exon 551588 551795 . + . gene_id "RvY_06621"; transcript_id "RvY_06621.1"; Scaffold003 rebuild exon 551866 552797 . + . gene_id "RvY_06621"; transcript_id "RvY_06621.1"; Scaffold003 rebuild transcript 553661 555395 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 553661 553835 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.1"; Scaffold003 rebuild exon 553921 554305 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.1"; Scaffold003 rebuild exon 554420 555395 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.1"; Scaffold003 rebuild transcript 553917 555395 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 553917 554305 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.2"; Scaffold003 rebuild exon 554420 555395 . - . gene_id "RvY_06622"; transcript_id "RvY_06622.2"; Scaffold003 rebuild transcript 556160 556636 . + . gene_id "RvY_06623"; transcript_id "RvY_06623.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 556160 556636 . + . gene_id "RvY_06623"; transcript_id "RvY_06623.1"; Scaffold003 rebuild transcript 556216 557818 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; annotation "rRNA 2'-O-methyltransferase fibrillarin"; Pfam "[Fibrillarin]"; EC "EC2.1.1.-"; KO "K14563"; similar_genes "FBRL_SCHPO(e-value:8.8e-112;bit-score:400.0)"; Scaffold003 rebuild exon 556216 556234 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; Scaffold003 rebuild exon 556296 556687 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; Scaffold003 rebuild exon 556810 556983 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; Scaffold003 rebuild exon 557245 557408 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; Scaffold003 rebuild exon 557469 557735 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; Scaffold003 rebuild exon 557806 557818 . - . gene_id "RvY_06624"; transcript_id "RvY_06624.1"; Scaffold003 rebuild transcript 558820 559446 . - . gene_id "RvY_06625"; transcript_id "RvY_06625.1"; annotation "hypothetical protein."; Pfam "[MARVEL] Membrane-associating domain"; Scaffold003 rebuild exon 558820 559446 . - . gene_id "RvY_06625"; transcript_id "RvY_06625.1"; Scaffold003 rebuild transcript 563742 565441 . - . gene_id "RvY_06626"; transcript_id "RvY_06626.1"; gene_name "mtc"; annotation "Sideroflexin-5"; Pfam "[Mtc] Tricarboxylate carrier"; CDD "tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism."; similar_genes "SFXN5_HUMAN(e-value:1.5e-96;bit-score:350.0)"; Scaffold003 rebuild exon 563742 564056 . - . gene_id "RvY_06626"; transcript_id "RvY_06626.1"; Scaffold003 rebuild exon 564345 564547 . - . gene_id "RvY_06626"; transcript_id "RvY_06626.1"; Scaffold003 rebuild exon 564864 565022 . - . gene_id "RvY_06626"; transcript_id "RvY_06626.1"; Scaffold003 rebuild exon 565099 565441 . - . gene_id "RvY_06626"; transcript_id "RvY_06626.1"; Scaffold003 rebuild transcript 565885 566605 . + . gene_id "RvY_06627"; transcript_id "RvY_06627.1"; annotation "hypothetical protein."; Pfam "[DUF423]"; Scaffold003 rebuild exon 565885 566223 . + . gene_id "RvY_06627"; transcript_id "RvY_06627.1"; Scaffold003 rebuild exon 566283 566328 . + . gene_id "RvY_06627"; transcript_id "RvY_06627.1"; Scaffold003 rebuild exon 566466 566605 . + . gene_id "RvY_06627"; transcript_id "RvY_06627.1"; Scaffold003 rebuild transcript 567224 567821 . + . gene_id "RvY_06628"; transcript_id "RvY_06628.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 567224 567436 . + . gene_id "RvY_06628"; transcript_id "RvY_06628.1"; Scaffold003 rebuild exon 567582 567821 . + . gene_id "RvY_06628"; transcript_id "RvY_06628.1"; Scaffold003 rebuild transcript 569879 570235 . + . gene_id "RvY_06629"; transcript_id "RvY_06629.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 569879 570235 . + . gene_id "RvY_06629"; transcript_id "RvY_06629.1"; Scaffold003 rebuild transcript 572451 574490 . - . gene_id "RvY_06630"; transcript_id "RvY_06630.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 572451 572754 . - . gene_id "RvY_06630"; transcript_id "RvY_06630.1"; Scaffold003 rebuild exon 574132 574490 . - . gene_id "RvY_06630"; transcript_id "RvY_06630.1"; Scaffold003 rebuild transcript 583534 584090 . + . gene_id "RvY_06631"; transcript_id "RvY_06631.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 583534 583689 . + . gene_id "RvY_06631"; transcript_id "RvY_06631.1"; Scaffold003 rebuild exon 583748 583853 . + . gene_id "RvY_06631"; transcript_id "RvY_06631.1"; Scaffold003 rebuild exon 583921 584090 . + . gene_id "RvY_06631"; transcript_id "RvY_06631.1"; Scaffold003 rebuild transcript 584590 585856 . + . gene_id "RvY_06632"; transcript_id "RvY_06632.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 584590 584686 . + . gene_id "RvY_06632"; transcript_id "RvY_06632.1"; Scaffold003 rebuild exon 585525 585856 . + . gene_id "RvY_06632"; transcript_id "RvY_06632.1"; Scaffold003 rebuild transcript 589902 591942 . - . gene_id "RvY_06633"; transcript_id "RvY_06633.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 589902 590447 . - . gene_id "RvY_06633"; transcript_id "RvY_06633.1"; Scaffold003 rebuild exon 590716 591434 . - . gene_id "RvY_06633"; transcript_id "RvY_06633.1"; Scaffold003 rebuild exon 591780 591942 . - . gene_id "RvY_06633"; transcript_id "RvY_06633.1"; Scaffold003 rebuild transcript 592088 592774 . - . gene_id "RvY_06634"; transcript_id "RvY_06634.1"; annotation "hypothetical protein."; Pfam "[CENP-N] Kinetochore protein CHL4 like"; Scaffold003 rebuild exon 592088 592774 . - . gene_id "RvY_06634"; transcript_id "RvY_06634.1"; Scaffold003 rebuild transcript 593102 593326 . + . gene_id "RvY_06635"; transcript_id "RvY_06635.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 593102 593326 . + . gene_id "RvY_06635"; transcript_id "RvY_06635.1"; Scaffold003 rebuild transcript 595237 597336 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; gene_name "RPR"; annotation "hypothetical protein."; Pfam "[CTK3] CTD kinase subunit gamma CTK3|[CTD_bind] RNA polymerase II-binding domain."; CDD "domain present in proteins, which are involved in regulation of nuclear pre-mRNA."; KO "K15559"; Scaffold003 rebuild exon 595237 595387 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild exon 595445 595589 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild exon 595646 595752 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild exon 595931 596226 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild exon 596371 596497 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild exon 596613 596788 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild exon 597181 597336 . + . gene_id "RvY_06636"; transcript_id "RvY_06636.1"; Scaffold003 rebuild transcript 597910 600002 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; gene_name "DNAJC3"; annotation "putative DnaJ homolog subfamily C member 3"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[DnaJ]|[TPR_7] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]"; KO "K09523"; similar_genes "DNJC3_CHICK(e-value:2.2e-36;bit-score:150.0)"; Scaffold003 rebuild exon 597910 598207 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 598324 598456 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 598531 598912 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 599008 599151 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 599224 599367 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 599437 599511 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 599580 599704 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 599765 599869 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild exon 599930 600002 . - . gene_id "RvY_06637"; transcript_id "RvY_06637.1"; Scaffold003 rebuild transcript 601082 601718 . + . gene_id "RvY_06638"; transcript_id "RvY_06638.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 601082 601485 . + . gene_id "RvY_06638"; transcript_id "RvY_06638.1"; Scaffold003 rebuild exon 601712 601718 . + . gene_id "RvY_06638"; transcript_id "RvY_06638.1"; Scaffold003 rebuild transcript 601781 603521 . + . gene_id "RvY_06639"; transcript_id "RvY_06639.1"; gene_name "gshB"; annotation "glutathione synthase [EC:6.3.2.3]"; Pfam "[GSH_synthase] Eukaryotic glutathione synthase|[GSH_synth_ATP] Eukaryotic glutathione synthase, ATP binding domain"; CDD "Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily."; EC "EC6.3.2.3"; KO "K01920"; similar_genes "GSHB_BRAJU(e-value:2.1e-17;bit-score:87.0)"; Scaffold003 rebuild exon 601781 602636 . + . gene_id "RvY_06639"; transcript_id "RvY_06639.1"; Scaffold003 rebuild exon 602854 602995 . + . gene_id "RvY_06639"; transcript_id "RvY_06639.1"; Scaffold003 rebuild exon 603059 603521 . + . gene_id "RvY_06639"; transcript_id "RvY_06639.1"; Scaffold003 rebuild transcript 604125 605311 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 604125 604413 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.1"; Scaffold003 rebuild exon 604523 604776 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.1"; Scaffold003 rebuild exon 604859 605311 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.1"; Scaffold003 rebuild transcript 604531 605311 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 604531 604776 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.2"; Scaffold003 rebuild exon 604859 605311 . + . gene_id "RvY_06640"; transcript_id "RvY_06640.2"; Scaffold003 rebuild transcript 606379 610627 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; gene_name "ATPeVI"; annotation "putative Probable V-type proton ATPase 116 kDa subunit a"; Pfam "[V_ATPase_I] V-type ATPase 116kDa subunit family"; EC "EC3.6.3.14"; KO "K02154"; similar_genes "VPP1_CAEEL(e-value:6.1e-47;bit-score:185.0)"; Scaffold003 rebuild exon 606379 606495 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 606563 606641 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 606740 606837 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 607011 607139 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 607265 607572 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 607646 607739 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 607803 608015 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 608087 608237 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 608473 608612 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 608713 608858 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 608958 609212 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 609298 609541 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 609654 609746 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 609858 609977 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 610088 610202 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 610262 610396 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild exon 610491 610627 . + . gene_id "RvY_06641"; transcript_id "RvY_06641.1"; Scaffold003 rebuild transcript 610860 612375 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; gene_name "ERCC1"; annotation "DNA excision repair protein ERCC-1"; Pfam "[Rad10] Binding domain of DNA repair protein Ercc1 (rad10/Swi10)"; CDD "DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10849"; similar_genes "ERCC1_BOVIN(e-value:1.5e-58;bit-score:224.0)"; Scaffold003 rebuild exon 610860 610991 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 611058 611126 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 611186 611257 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 611328 611427 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 611509 611585 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 611654 611753 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 611868 612051 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild exon 612186 612375 . - . gene_id "RvY_06642"; transcript_id "RvY_06642.1"; Scaffold003 rebuild transcript 612848 615851 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; gene_name "WD40"; annotation "hypothetical protein."; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold003 rebuild exon 612848 613147 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 613209 613472 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 613731 613960 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 614028 614229 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 614297 614414 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 614868 615152 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 615465 615679 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild exon 615750 615851 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.1"; Scaffold003 rebuild transcript 612848 614479 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.2"; gene_name "WD40"; annotation "hypothetical protein."; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold003 rebuild exon 612848 613147 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.2"; Scaffold003 rebuild exon 613209 613472 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.2"; Scaffold003 rebuild exon 613731 613960 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.2"; Scaffold003 rebuild exon 614028 614229 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.2"; Scaffold003 rebuild exon 614297 614479 . + . gene_id "RvY_06643"; transcript_id "RvY_06643.2"; Scaffold003 rebuild transcript 616147 617429 . - . gene_id "RvY_06644"; transcript_id "RvY_06644.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 616147 616373 . - . gene_id "RvY_06644"; transcript_id "RvY_06644.1"; Scaffold003 rebuild exon 616569 616784 . - . gene_id "RvY_06644"; transcript_id "RvY_06644.1"; Scaffold003 rebuild exon 617345 617429 . - . gene_id "RvY_06644"; transcript_id "RvY_06644.1"; Scaffold003 rebuild transcript 618798 619927 . + . gene_id "RvY_06645"; transcript_id "RvY_06645.1"; gene_name "SNAP29"; annotation "synaptosomal-associated protein, 29kDa"; Pfam "[SNARE]"; KO "K08509"; similar_genes "SNP25_TORMA(e-value:2.0e-24;bit-score:110.0)"; Scaffold003 rebuild exon 618798 619110 . + . gene_id "RvY_06645"; transcript_id "RvY_06645.1"; Scaffold003 rebuild exon 619443 619927 . + . gene_id "RvY_06645"; transcript_id "RvY_06645.1"; Scaffold003 rebuild transcript 620322 623270 . - . gene_id "RvY_06646"; transcript_id "RvY_06646.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; similar_genes "CRIS1_MOUSE(e-value:3.0e-10;bit-score:63.0)"; Scaffold003 rebuild exon 620322 620458 . - . gene_id "RvY_06646"; transcript_id "RvY_06646.1"; Scaffold003 rebuild exon 621406 621500 . - . gene_id "RvY_06646"; transcript_id "RvY_06646.1"; Scaffold003 rebuild exon 621649 621734 . - . gene_id "RvY_06646"; transcript_id "RvY_06646.1"; Scaffold003 rebuild exon 621885 622024 . - . gene_id "RvY_06646"; transcript_id "RvY_06646.1"; Scaffold003 rebuild exon 622283 623270 . - . gene_id "RvY_06646"; transcript_id "RvY_06646.1"; Scaffold003 rebuild transcript 627310 629393 . + . gene_id "RvY_06647"; transcript_id "RvY_06647.1"; gene_name "EDEM1"; annotation "putative ER degradation-enhancing alpha-mannosidase-like 1"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; KO "K10084"; similar_genes "EDEM1_HUMAN(e-value:2.8e-36;bit-score:150.0)"; Scaffold003 rebuild exon 627310 627587 . + . gene_id "RvY_06647"; transcript_id "RvY_06647.1"; Scaffold003 rebuild exon 627675 627747 . + . gene_id "RvY_06647"; transcript_id "RvY_06647.1"; Scaffold003 rebuild exon 627905 628459 . + . gene_id "RvY_06647"; transcript_id "RvY_06647.1"; Scaffold003 rebuild exon 628516 629061 . + . gene_id "RvY_06647"; transcript_id "RvY_06647.1"; Scaffold003 rebuild exon 629124 629393 . + . gene_id "RvY_06647"; transcript_id "RvY_06647.1"; Scaffold003 rebuild transcript 629843 630757 . - . gene_id "RvY_06648"; transcript_id "RvY_06648.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 629843 629994 . - . gene_id "RvY_06648"; transcript_id "RvY_06648.1"; Scaffold003 rebuild exon 630157 630757 . - . gene_id "RvY_06648"; transcript_id "RvY_06648.1"; Scaffold003 rebuild transcript 638773 639054 . + . gene_id "RvY_06649"; transcript_id "RvY_06649.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 638773 639054 . + . gene_id "RvY_06649"; transcript_id "RvY_06649.1"; Scaffold003 rebuild transcript 638803 639567 . - . gene_id "RvY_06650"; transcript_id "RvY_06650.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 638803 639567 . - . gene_id "RvY_06650"; transcript_id "RvY_06650.1"; Scaffold003 rebuild transcript 639818 640009 . + . gene_id "RvY_06651"; transcript_id "RvY_06651.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 639818 640009 . + . gene_id "RvY_06651"; transcript_id "RvY_06651.1"; Scaffold003 rebuild transcript 640207 640570 . - . gene_id "RvY_06652"; transcript_id "RvY_06652.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 640207 640388 . - . gene_id "RvY_06652"; transcript_id "RvY_06652.1"; Scaffold003 rebuild exon 640453 640570 . - . gene_id "RvY_06652"; transcript_id "RvY_06652.1"; Scaffold003 rebuild transcript 641756 642058 . - . gene_id "RvY_06653"; transcript_id "RvY_06653.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 641756 641974 . - . gene_id "RvY_06653"; transcript_id "RvY_06653.1"; Scaffold003 rebuild exon 642056 642058 . - . gene_id "RvY_06653"; transcript_id "RvY_06653.1"; Scaffold003 rebuild transcript 642909 643007 . - . gene_id "RvY_06654"; transcript_id "RvY_06654.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 642909 643007 . - . gene_id "RvY_06654"; transcript_id "RvY_06654.1"; Scaffold003 rebuild transcript 644924 646020 . + . gene_id "RvY_06655"; transcript_id "RvY_06655.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 644924 645270 . + . gene_id "RvY_06655"; transcript_id "RvY_06655.1"; Scaffold003 rebuild exon 645366 646020 . + . gene_id "RvY_06655"; transcript_id "RvY_06655.1"; Scaffold003 rebuild transcript 646899 647942 . - . gene_id "RvY_06656"; transcript_id "RvY_06656.1"; gene_name "NFYA"; annotation "nuclear transcription factor Y, alpha"; Pfam "[CBFB_NFYA] CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B"; CDD "CCAAT-Binding transcription Factor."; KO "K08064"; similar_genes "NFYA_RAT(e-value:9.8e-22;bit-score:101.0)"; Scaffold003 rebuild exon 646899 647045 . - . gene_id "RvY_06656"; transcript_id "RvY_06656.1"; Scaffold003 rebuild exon 647133 647417 . - . gene_id "RvY_06656"; transcript_id "RvY_06656.1"; Scaffold003 rebuild exon 647628 647693 . - . gene_id "RvY_06656"; transcript_id "RvY_06656.1"; Scaffold003 rebuild exon 647755 647856 . - . gene_id "RvY_06656"; transcript_id "RvY_06656.1"; Scaffold003 rebuild exon 647934 647942 . - . gene_id "RvY_06656"; transcript_id "RvY_06656.1"; Scaffold003 rebuild transcript 648692 650132 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; gene_name "(1)PP2Cc(2)K01090"; annotation "(1)hypothetical protein.(2)protein phosphatase [EC:3.1.3.16]"; Pfam "[PP2C_2] Protein phosphatase 2C|[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.16"; KO "(1)K14803(2)K01090"; similar_genes "PPM1G_HUMAN(e-value:4.1e-14;bit-score:76.0)"; Scaffold003 rebuild exon 648692 648847 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; Scaffold003 rebuild exon 649094 649291 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; Scaffold003 rebuild exon 649354 649600 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; Scaffold003 rebuild exon 649671 649800 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; Scaffold003 rebuild exon 649862 649955 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; Scaffold003 rebuild exon 650019 650132 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.1"; Scaffold003 rebuild transcript 648692 649994 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.2"; gene_name "(1)PP2Cc(2)K01090"; annotation "(1)hypothetical protein.(2)protein phosphatase [EC:3.1.3.16]"; Pfam "[PP2C_2] Protein phosphatase 2C|[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.16"; KO "(1)K14803(2)K01090"; similar_genes "PPM1G_HUMAN(e-value:4.1e-14;bit-score:76.0)"; Scaffold003 rebuild exon 648692 648847 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.2"; Scaffold003 rebuild exon 649094 649291 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.2"; Scaffold003 rebuild exon 649354 649600 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.2"; Scaffold003 rebuild exon 649671 649800 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.2"; Scaffold003 rebuild exon 649862 649994 . + . gene_id "RvY_06657"; transcript_id "RvY_06657.2"; Scaffold003 rebuild transcript 650432 651016 . - . gene_id "RvY_06658"; transcript_id "RvY_06658.1"; gene_name "COG5133"; annotation "hypothetical protein."; Pfam "[DUF59] Domain of unknown function DUF59"; CDD "Uncharacterized conserved protein [Function unknown]"; Scaffold003 rebuild exon 650432 650877 . - . gene_id "RvY_06658"; transcript_id "RvY_06658.1"; Scaffold003 rebuild exon 650956 651016 . - . gene_id "RvY_06658"; transcript_id "RvY_06658.1"; Scaffold003 rebuild transcript 652905 653204 . + . gene_id "RvY_06659"; transcript_id "RvY_06659.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 652905 653204 . + . gene_id "RvY_06659"; transcript_id "RvY_06659.1"; Scaffold003 rebuild transcript 653826 656134 . + . gene_id "RvY_06660"; transcript_id "RvY_06660.1"; gene_name "K00472"; annotation "prolyl 4-hydroxylase [EC:1.14.11.2]"; Pfam "[P4Ha_N] Prolyl 4-Hydroxylase alpha-subunit, N-terminal region|[2OG-FeII_Oxy_3] 2OG-Fe(II) oxygenase superfamily|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor."; EC "EC1.14.11.2"; KO "K00472"; similar_genes "P4HA2_CAEEL(e-value:5.5e-16;bit-score:82.0)"; Scaffold003 rebuild exon 653826 654013 . + . gene_id "RvY_06660"; transcript_id "RvY_06660.1"; Scaffold003 rebuild exon 654080 654231 . + . gene_id "RvY_06660"; transcript_id "RvY_06660.1"; Scaffold003 rebuild exon 654371 654927 . + . gene_id "RvY_06660"; transcript_id "RvY_06660.1"; Scaffold003 rebuild exon 655187 655431 . + . gene_id "RvY_06660"; transcript_id "RvY_06660.1"; Scaffold003 rebuild exon 655654 656134 . + . gene_id "RvY_06660"; transcript_id "RvY_06660.1"; Scaffold003 rebuild transcript 656666 658635 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.1"; gene_name "K00472"; annotation "putative Prolyl 4-hydroxylase subunit alpha-2"; Pfam "[P4Ha_N] Prolyl 4-Hydroxylase alpha-subunit, N-terminal region|[2OG-FeII_Oxy_3] 2OG-Fe(II) oxygenase superfamily|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor."; EC "EC1.14.11.2"; KO "K00472"; similar_genes "P4HA2_MOUSE(e-value:6.8e-27;bit-score:118.0)"; Scaffold003 rebuild exon 656666 656856 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.1"; Scaffold003 rebuild exon 656923 657086 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.1"; Scaffold003 rebuild exon 657161 657732 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.1"; Scaffold003 rebuild exon 657814 658058 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.1"; Scaffold003 rebuild exon 658149 658635 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.1"; Scaffold003 rebuild transcript 656756 658635 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.2"; gene_name "K00472"; annotation "putative Prolyl 4-hydroxylase subunit alpha-2"; Pfam "[P4Ha_N] Prolyl 4-Hydroxylase alpha-subunit, N-terminal region|[2OG-FeII_Oxy_3] 2OG-Fe(II) oxygenase superfamily|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor."; EC "EC1.14.11.2"; KO "K00472"; similar_genes "P4HA2_MOUSE(e-value:6.8e-27;bit-score:118.0)"; Scaffold003 rebuild exon 656756 656856 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.2"; Scaffold003 rebuild exon 656923 657086 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.2"; Scaffold003 rebuild exon 657161 657732 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.2"; Scaffold003 rebuild exon 657814 658058 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.2"; Scaffold003 rebuild exon 658149 658635 . + . gene_id "RvY_06661"; transcript_id "RvY_06661.2"; Scaffold003 rebuild transcript 659830 662803 . - . gene_id "RvY_06662"; transcript_id "RvY_06662.1"; gene_name "nagK"; annotation "N-acetylglucosamine kinase [EC:2.7.1.59]"; Pfam "[BcrAD_BadFG] BadF/BadG/BcrA/BcrD ATPase family"; CDD "BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370."; EC "EC2.7.1.59"; KO "K00884"; similar_genes "NAGK_RAT(e-value:3.7e-17;bit-score:86.0)"; Scaffold003 rebuild exon 659830 660098 . - . gene_id "RvY_06662"; transcript_id "RvY_06662.1"; Scaffold003 rebuild exon 660486 660953 . - . gene_id "RvY_06662"; transcript_id "RvY_06662.1"; Scaffold003 rebuild exon 662401 662803 . - . gene_id "RvY_06662"; transcript_id "RvY_06662.1"; Scaffold003 rebuild transcript 666931 668950 . - . gene_id "RvY_06663"; transcript_id "RvY_06663.1"; annotation "hypothetical protein."; Pfam "[PP-binding] Phosphopantetheine attachment site"; Scaffold003 rebuild exon 666931 667065 . - . gene_id "RvY_06663"; transcript_id "RvY_06663.1"; Scaffold003 rebuild exon 667170 667327 . - . gene_id "RvY_06663"; transcript_id "RvY_06663.1"; Scaffold003 rebuild exon 667454 668047 . - . gene_id "RvY_06663"; transcript_id "RvY_06663.1"; Scaffold003 rebuild exon 668938 668950 . - . gene_id "RvY_06663"; transcript_id "RvY_06663.1"; Scaffold003 rebuild transcript 670249 673184 . - . gene_id "RvY_06664"; transcript_id "RvY_06664.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 670249 670835 . - . gene_id "RvY_06664"; transcript_id "RvY_06664.1"; Scaffold003 rebuild exon 672727 672864 . - . gene_id "RvY_06664"; transcript_id "RvY_06664.1"; Scaffold003 rebuild exon 673136 673184 . - . gene_id "RvY_06664"; transcript_id "RvY_06664.1"; Scaffold003 rebuild transcript 680618 684321 . + . gene_id "RvY_06665"; transcript_id "RvY_06665.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[efhand_3] Cytoskeletal-regulatory complex EF hand|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[RhoGEF]|[C2]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; similar_genes "ITSN2_HUMAN(e-value:7.0e-14;bit-score:75.0)"; Scaffold003 rebuild exon 680618 681058 . + . gene_id "RvY_06665"; transcript_id "RvY_06665.1"; Scaffold003 rebuild exon 681482 682642 . + . gene_id "RvY_06665"; transcript_id "RvY_06665.1"; Scaffold003 rebuild exon 682933 684321 . + . gene_id "RvY_06665"; transcript_id "RvY_06665.1"; Scaffold003 rebuild transcript 685927 687141 . + . gene_id "RvY_06666"; transcript_id "RvY_06666.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 685927 687141 . + . gene_id "RvY_06666"; transcript_id "RvY_06666.1"; Scaffold003 rebuild transcript 692270 692530 . + . gene_id "RvY_06667"; transcript_id "RvY_06667.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 692270 692530 . + . gene_id "RvY_06667"; transcript_id "RvY_06667.1"; Scaffold003 rebuild transcript 693435 693608 . + . gene_id "RvY_06668"; transcript_id "RvY_06668.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 693435 693608 . + . gene_id "RvY_06668"; transcript_id "RvY_06668.1"; Scaffold003 rebuild transcript 696778 697011 . + . gene_id "RvY_06669"; transcript_id "RvY_06669.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 696778 697011 . + . gene_id "RvY_06669"; transcript_id "RvY_06669.1"; Scaffold003 rebuild transcript 697395 698999 . + . gene_id "RvY_06670"; transcript_id "RvY_06670.1"; annotation "hypothetical protein."; Pfam "[Transposase_21] Transposase family tnp2"; Scaffold003 rebuild exon 697395 697762 . + . gene_id "RvY_06670"; transcript_id "RvY_06670.1"; Scaffold003 rebuild exon 697834 697946 . + . gene_id "RvY_06670"; transcript_id "RvY_06670.1"; Scaffold003 rebuild exon 698019 698296 . + . gene_id "RvY_06670"; transcript_id "RvY_06670.1"; Scaffold003 rebuild exon 698355 698504 . + . gene_id "RvY_06670"; transcript_id "RvY_06670.1"; Scaffold003 rebuild exon 698664 698999 . + . gene_id "RvY_06670"; transcript_id "RvY_06670.1"; Scaffold003 rebuild transcript 701655 702916 . + . gene_id "RvY_06671"; transcript_id "RvY_06671.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold003 rebuild exon 701655 701942 . + . gene_id "RvY_06671"; transcript_id "RvY_06671.1"; Scaffold003 rebuild exon 702080 702388 . + . gene_id "RvY_06671"; transcript_id "RvY_06671.1"; Scaffold003 rebuild exon 702422 702916 . + . gene_id "RvY_06671"; transcript_id "RvY_06671.1"; Scaffold003 rebuild transcript 703908 704305 . + . gene_id "RvY_06672"; transcript_id "RvY_06672.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 703908 703962 . + . gene_id "RvY_06672"; transcript_id "RvY_06672.1"; Scaffold003 rebuild exon 704052 704305 . + . gene_id "RvY_06672"; transcript_id "RvY_06672.1"; Scaffold003 rebuild transcript 704369 705031 . + . gene_id "RvY_06673"; transcript_id "RvY_06673.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 704369 704386 . + . gene_id "RvY_06673"; transcript_id "RvY_06673.1"; Scaffold003 rebuild exon 704494 704586 . + . gene_id "RvY_06673"; transcript_id "RvY_06673.1"; Scaffold003 rebuild exon 704649 704777 . + . gene_id "RvY_06673"; transcript_id "RvY_06673.1"; Scaffold003 rebuild exon 704954 705031 . + . gene_id "RvY_06673"; transcript_id "RvY_06673.1"; Scaffold003 rebuild transcript 705148 705492 . + . gene_id "RvY_06674"; transcript_id "RvY_06674.1"; annotation "hypothetical protein."; Pfam "[BEN]"; Scaffold003 rebuild exon 705148 705259 . + . gene_id "RvY_06674"; transcript_id "RvY_06674.1"; Scaffold003 rebuild exon 705359 705492 . + . gene_id "RvY_06674"; transcript_id "RvY_06674.1"; Scaffold003 rebuild transcript 706613 706996 . - . gene_id "RvY_06675"; transcript_id "RvY_06675.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 706613 706996 . - . gene_id "RvY_06675"; transcript_id "RvY_06675.1"; Scaffold003 rebuild transcript 709041 712214 . + . gene_id "RvY_06676"; transcript_id "RvY_06676.1"; gene_name "PI4Ka"; annotation "hypothetical protein."; CDD "Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle."; Scaffold003 rebuild exon 709041 709054 . + . gene_id "RvY_06676"; transcript_id "RvY_06676.1"; Scaffold003 rebuild exon 709370 709463 . + . gene_id "RvY_06676"; transcript_id "RvY_06676.1"; Scaffold003 rebuild exon 711963 712214 . + . gene_id "RvY_06676"; transcript_id "RvY_06676.1"; Scaffold003 rebuild transcript 713483 713854 . + . gene_id "RvY_06677"; transcript_id "RvY_06677.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 713483 713854 . + . gene_id "RvY_06677"; transcript_id "RvY_06677.1"; Scaffold003 rebuild transcript 713905 715047 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 713905 714297 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.1"; Scaffold003 rebuild exon 714958 715047 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.1"; Scaffold003 rebuild transcript 713905 714623 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 713905 714297 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.2"; Scaffold003 rebuild exon 714534 714623 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.2"; Scaffold003 rebuild transcript 713905 714348 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 713905 714348 . + . gene_id "RvY_06678"; transcript_id "RvY_06678.3"; Scaffold003 rebuild transcript 715359 715778 . + . gene_id "RvY_06679"; transcript_id "RvY_06679.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 715359 715778 . + . gene_id "RvY_06679"; transcript_id "RvY_06679.1"; Scaffold003 rebuild transcript 718798 719214 . - . gene_id "RvY_06680"; transcript_id "RvY_06680.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 718798 719214 . - . gene_id "RvY_06680"; transcript_id "RvY_06680.1"; Scaffold003 rebuild transcript 722740 723239 . + . gene_id "RvY_06681"; transcript_id "RvY_06681.1"; gene_name "PI4Ka"; annotation "hypothetical protein."; CDD "Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle."; Scaffold003 rebuild exon 722740 722899 . + . gene_id "RvY_06681"; transcript_id "RvY_06681.1"; Scaffold003 rebuild exon 723004 723239 . + . gene_id "RvY_06681"; transcript_id "RvY_06681.1"; Scaffold003 rebuild transcript 723014 723619 . - . gene_id "RvY_06682"; transcript_id "RvY_06682.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 723014 723211 . - . gene_id "RvY_06682"; transcript_id "RvY_06682.1"; Scaffold003 rebuild exon 723347 723619 . - . gene_id "RvY_06682"; transcript_id "RvY_06682.1"; Scaffold003 rebuild transcript 723308 723619 . - . gene_id "RvY_06682"; transcript_id "RvY_06682.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 723308 723619 . - . gene_id "RvY_06682"; transcript_id "RvY_06682.2"; Scaffold003 rebuild transcript 723816 728518 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; gene_name "DDX11"; annotation "putative Probable ATP-dependent RNA helicase DDX12"; Pfam "[DEAD_2]|[Helicase_C_2] Helicase C-terminal domain"; CDD "DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "K11273"; similar_genes "DDX12_HUMAN(e-value:3.7e-34;bit-score:143.0)"; Scaffold003 rebuild exon 723816 723869 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 723935 724089 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 724157 724484 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 724616 724768 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 724865 725041 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 725112 725945 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 726220 726537 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 726596 726947 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 727966 728060 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild exon 728324 728518 . - . gene_id "RvY_06683"; transcript_id "RvY_06683.1"; Scaffold003 rebuild transcript 729684 731941 . + . gene_id "RvY_06684"; transcript_id "RvY_06684.1"; annotation "hypothetical protein."; Pfam "[ArfGap] Putative GTPase activating protein for Arf"; KO "K15044"; similar_genes "AGFG2_HUMAN(e-value:8.6e-23;bit-score:105.0)"; Scaffold003 rebuild exon 729684 730126 . + . gene_id "RvY_06684"; transcript_id "RvY_06684.1"; Scaffold003 rebuild exon 730458 730551 . + . gene_id "RvY_06684"; transcript_id "RvY_06684.1"; Scaffold003 rebuild exon 730630 730956 . + . gene_id "RvY_06684"; transcript_id "RvY_06684.1"; Scaffold003 rebuild exon 731129 731941 . + . gene_id "RvY_06684"; transcript_id "RvY_06684.1"; Scaffold003 rebuild transcript 733380 734842 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold003 rebuild exon 733380 733798 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; Scaffold003 rebuild exon 733860 734025 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; Scaffold003 rebuild exon 734110 734264 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; Scaffold003 rebuild exon 734350 734529 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; Scaffold003 rebuild exon 734617 734685 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; Scaffold003 rebuild exon 734788 734842 . - . gene_id "RvY_06685"; transcript_id "RvY_06685.1"; Scaffold003 rebuild transcript 736839 739828 . - . gene_id "RvY_06686"; transcript_id "RvY_06686.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold003 rebuild exon 736839 737785 . - . gene_id "RvY_06686"; transcript_id "RvY_06686.1"; Scaffold003 rebuild exon 737884 738102 . - . gene_id "RvY_06686"; transcript_id "RvY_06686.1"; Scaffold003 rebuild exon 739207 739363 . - . gene_id "RvY_06686"; transcript_id "RvY_06686.1"; Scaffold003 rebuild exon 739462 739616 . - . gene_id "RvY_06686"; transcript_id "RvY_06686.1"; Scaffold003 rebuild exon 739708 739828 . - . gene_id "RvY_06686"; transcript_id "RvY_06686.1"; Scaffold003 rebuild transcript 740857 742261 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.1"; gene_name "(1)TMEM55"; annotation "(1)phosphatidylinositol-4,5-bisphosphate 4-phosphatase [EC:3.1.3.78](2)hypothetical protein."; Pfam "[Tmemb_55A] Transmembrane protein 55A"; EC "(1)EC3.1.3.-|EC3.1.3.78"; KO "(1)K13084"; similar_genes "(1)T55BB_DANRE(e-value:7.3e-18;bit-score:88.0)"; Scaffold003 rebuild exon 740857 741247 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.1"; Scaffold003 rebuild exon 741590 741696 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.1"; Scaffold003 rebuild exon 742037 742261 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.1"; Scaffold003 rebuild transcript 741636 742362 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.2"; gene_name "(1)TMEM55"; annotation "(1)phosphatidylinositol-4,5-bisphosphate 4-phosphatase [EC:3.1.3.78](2)hypothetical protein."; Pfam "[Tmemb_55A] Transmembrane protein 55A"; EC "(1)EC3.1.3.-|EC3.1.3.78"; KO "(1)K13084"; similar_genes "(1)T55BB_DANRE(e-value:7.3e-18;bit-score:88.0)"; Scaffold003 rebuild exon 741636 741696 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.2"; Scaffold003 rebuild exon 742037 742362 . - . gene_id "RvY_06687"; transcript_id "RvY_06687.2"; Scaffold003 rebuild transcript 744092 744406 . - . gene_id "RvY_06688"; transcript_id "RvY_06688.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 744092 744255 . - . gene_id "RvY_06688"; transcript_id "RvY_06688.1"; Scaffold003 rebuild exon 744352 744406 . - . gene_id "RvY_06688"; transcript_id "RvY_06688.1"; Scaffold003 rebuild transcript 745584 745697 . - . gene_id "RvY_06689"; transcript_id "RvY_06689.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 745584 745697 . - . gene_id "RvY_06689"; transcript_id "RvY_06689.1"; Scaffold003 rebuild transcript 746467 747296 . + . gene_id "RvY_06690"; transcript_id "RvY_06690.1"; gene_name "GABARAP"; annotation "putative Gamma-aminobutyric acid receptor-associated protein"; Pfam "[APG12] Ubiquitin-like autophagy protein Apg12|[Atg8] Autophagy protein Atg8 ubiquitin like"; CDD "GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation."; KO "K08341"; similar_genes "GBRAP_HUMAN(e-value:1.2e-47;bit-score:187.0)"; Scaffold003 rebuild exon 746467 746673 . + . gene_id "RvY_06690"; transcript_id "RvY_06690.1"; Scaffold003 rebuild exon 746747 746842 . + . gene_id "RvY_06690"; transcript_id "RvY_06690.1"; Scaffold003 rebuild exon 747240 747296 . + . gene_id "RvY_06690"; transcript_id "RvY_06690.1"; Scaffold003 rebuild transcript 747851 748996 . - . gene_id "RvY_06691"; transcript_id "RvY_06691.1"; gene_name "BAG1_N"; annotation "putative Ubiquitin domain-containing protein UBFD1"; Pfam "[ubiquitin] Ubiquitin family"; CDD "BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP)."; similar_genes "UBFD1_HUMAN(e-value:4.1e-31;bit-score:132.0)"; Scaffold003 rebuild exon 747851 747926 . - . gene_id "RvY_06691"; transcript_id "RvY_06691.1"; Scaffold003 rebuild exon 748128 748170 . - . gene_id "RvY_06691"; transcript_id "RvY_06691.1"; Scaffold003 rebuild exon 748238 748646 . - . gene_id "RvY_06691"; transcript_id "RvY_06691.1"; Scaffold003 rebuild exon 748763 748996 . - . gene_id "RvY_06691"; transcript_id "RvY_06691.1"; Scaffold003 rebuild transcript 749970 754533 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; gene_name "EPHX1"; annotation "putative Epoxide hydrolase 1"; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold|[EHN] Epoxide hydrolase N terminus"; EC "EC3.3.2.9"; KO "K01253"; similar_genes "HYEP_MOUSE(e-value:3.4e-26;bit-score:116.0)"; Scaffold003 rebuild exon 749970 750415 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; Scaffold003 rebuild exon 750619 750812 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; Scaffold003 rebuild exon 750871 751003 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; Scaffold003 rebuild exon 751069 751101 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; Scaffold003 rebuild exon 751174 751453 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; Scaffold003 rebuild exon 754180 754533 . - . gene_id "RvY_06692"; transcript_id "RvY_06692.1"; Scaffold003 rebuild transcript 756665 758434 . + . gene_id "RvY_06693"; transcript_id "RvY_06693.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 756665 756782 . + . gene_id "RvY_06693"; transcript_id "RvY_06693.1"; Scaffold003 rebuild exon 758223 758434 . + . gene_id "RvY_06693"; transcript_id "RvY_06693.1"; Scaffold003 rebuild transcript 759656 760939 . + . gene_id "RvY_06694"; transcript_id "RvY_06694.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 759656 760078 . + . gene_id "RvY_06694"; transcript_id "RvY_06694.1"; Scaffold003 rebuild exon 760448 760939 . + . gene_id "RvY_06694"; transcript_id "RvY_06694.1"; Scaffold003 rebuild transcript 761077 762798 . + . gene_id "RvY_06695"; transcript_id "RvY_06695.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 761077 761320 . + . gene_id "RvY_06695"; transcript_id "RvY_06695.1"; Scaffold003 rebuild exon 762344 762798 . + . gene_id "RvY_06695"; transcript_id "RvY_06695.1"; Scaffold003 rebuild transcript 768661 769501 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 768661 768839 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.1"; Scaffold003 rebuild exon 768932 769187 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.1"; Scaffold003 rebuild exon 769394 769501 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.1"; Scaffold003 rebuild transcript 768661 769196 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 768661 768839 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.2"; Scaffold003 rebuild exon 768932 769196 . + . gene_id "RvY_06696"; transcript_id "RvY_06696.2"; Scaffold003 rebuild transcript 771693 773051 . + . gene_id "RvY_06697"; transcript_id "RvY_06697.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 771693 771937 . + . gene_id "RvY_06697"; transcript_id "RvY_06697.1"; Scaffold003 rebuild exon 772391 772492 . + . gene_id "RvY_06697"; transcript_id "RvY_06697.1"; Scaffold003 rebuild exon 772628 772751 . + . gene_id "RvY_06697"; transcript_id "RvY_06697.1"; Scaffold003 rebuild exon 772815 773051 . + . gene_id "RvY_06697"; transcript_id "RvY_06697.1"; Scaffold003 rebuild transcript 784803 785039 . - . gene_id "RvY_06698"; transcript_id "RvY_06698.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 784803 785039 . - . gene_id "RvY_06698"; transcript_id "RvY_06698.1"; Scaffold003 rebuild transcript 785571 785768 . + . gene_id "RvY_06699"; transcript_id "RvY_06699.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 785571 785768 . + . gene_id "RvY_06699"; transcript_id "RvY_06699.1"; Scaffold003 rebuild transcript 786182 786541 . - . gene_id "RvY_06700"; transcript_id "RvY_06700.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 786182 786541 . - . gene_id "RvY_06700"; transcript_id "RvY_06700.1"; Scaffold003 rebuild transcript 786902 787159 . - . gene_id "RvY_06701"; transcript_id "RvY_06701.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 786902 787159 . - . gene_id "RvY_06701"; transcript_id "RvY_06701.1"; Scaffold003 rebuild transcript 788644 791780 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "OPSB_APIME(e-value:1.2e-13;bit-score:74.0)"; Scaffold003 rebuild exon 788644 788873 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 789184 789518 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 789707 789786 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 789863 789908 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 790459 790536 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 791084 791114 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 791205 791267 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 791341 791474 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild exon 791560 791780 . - . gene_id "RvY_06702"; transcript_id "RvY_06702.1"; Scaffold003 rebuild transcript 793742 794153 . + . gene_id "RvY_06703"; transcript_id "RvY_06703.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 793742 793999 . + . gene_id "RvY_06703"; transcript_id "RvY_06703.1"; Scaffold003 rebuild exon 794052 794153 . + . gene_id "RvY_06703"; transcript_id "RvY_06703.1"; Scaffold003 rebuild transcript 793956 795258 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 793956 793984 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild exon 794047 794126 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild exon 794198 794243 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild exon 794314 794487 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild exon 794606 794668 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild exon 794779 794915 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild exon 795032 795258 . - . gene_id "RvY_06704"; transcript_id "RvY_06704.1"; Scaffold003 rebuild transcript 798376 799244 . + . gene_id "RvY_06705"; transcript_id "RvY_06705.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 798376 798699 . + . gene_id "RvY_06705"; transcript_id "RvY_06705.1"; Scaffold003 rebuild exon 799098 799244 . + . gene_id "RvY_06705"; transcript_id "RvY_06705.1"; Scaffold003 rebuild transcript 802435 802659 . + . gene_id "RvY_06706"; transcript_id "RvY_06706.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 802435 802659 . + . gene_id "RvY_06706"; transcript_id "RvY_06706.1"; Scaffold003 rebuild transcript 804830 805018 . - . gene_id "RvY_06707"; transcript_id "RvY_06707.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 804830 805018 . - . gene_id "RvY_06707"; transcript_id "RvY_06707.1"; Scaffold003 rebuild transcript 805097 805459 . + . gene_id "RvY_06708"; transcript_id "RvY_06708.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 805097 805459 . + . gene_id "RvY_06708"; transcript_id "RvY_06708.1"; Scaffold003 rebuild transcript 805814 809622 . - . gene_id "RvY_06709"; transcript_id "RvY_06709.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 805814 806656 . - . gene_id "RvY_06709"; transcript_id "RvY_06709.1"; Scaffold003 rebuild exon 809071 809622 . - . gene_id "RvY_06709"; transcript_id "RvY_06709.1"; Scaffold003 rebuild transcript 811441 813209 . - . gene_id "RvY_06710"; transcript_id "RvY_06710.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 811441 811533 . - . gene_id "RvY_06710"; transcript_id "RvY_06710.1"; Scaffold003 rebuild exon 813048 813209 . - . gene_id "RvY_06710"; transcript_id "RvY_06710.1"; Scaffold003 rebuild transcript 818777 820602 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; gene_name "IP_trans"; annotation "hypothetical protein."; Pfam "[IP_trans] Phosphatidylinositol transfer protein"; CDD "Phosphatidylinositol transfer protein. Along with the structurally unrelated Sec14p family (found in pfam00650), this family can bind/exchange one molecule of phosphatidylinositol (PI) or phosphatidylcholine (PC) and thus aids their transfer between different membrane compartments. There are three sub-families - all share an N-terminal PITP-like domain, whose sequence is highly conserved. It is described as consisting of three regions. The N-terminal region is thought to bind the lipid and contains two helices and an eight-stranded, mostly antiparallel beta-sheet. An intervening loop region, which is thought to play a role in protein-protein interactions, separates this from the C-terminal region, which exhibits the greatest sequence variation and may be involved in membrane binding. PITP alpha has a 16-fold greater affinity for PI than PC. Together with PITP beta, it is expressed ubiquitously in all tissues."; similar_genes "PIPNA_BOVIN(e-value:2.0e-24;bit-score:110.0)"; Scaffold003 rebuild exon 818777 818950 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 819193 819288 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 819373 819450 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 819557 819637 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 819745 819822 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 820006 820105 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 820260 820423 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 820488 820518 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild exon 820586 820602 . - . gene_id "RvY_06711"; transcript_id "RvY_06711.1"; Scaffold003 rebuild transcript 821220 823445 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; annotation "hypothetical protein."; Pfam "[SET]"; Scaffold003 rebuild exon 821220 821680 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 821899 822055 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 822116 822202 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 822264 822418 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 822478 822564 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 822649 822721 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 822805 822860 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 822946 823071 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild exon 823166 823445 . + . gene_id "RvY_06712"; transcript_id "RvY_06712.1"; Scaffold003 rebuild transcript 824396 831592 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; gene_name "INSR"; annotation "Putative molluscan insulin-related peptide(s) receptor"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[fn3] Fibronectin type III domain|[Recep_L_domain] Receptor L domain|[Furin-like] Furin-like cysteine rich region"; CDD "Catalytic Domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2."; EC "EC2.7.10.1"; KO "K04527"; similar_genes "MIPR_LYMST(e-value:6.3e-87;bit-score:318.0)"; Scaffold003 rebuild exon 824396 824693 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 824901 825437 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 825762 825919 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 826032 826206 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 826297 826395 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 826523 826674 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 826884 827159 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 827265 827472 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 827689 827961 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 828066 828538 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 828746 829036 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 829300 829580 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 829695 829896 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 829963 830027 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 830155 830492 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 830726 831003 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 831063 831366 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild exon 831432 831592 . + . gene_id "RvY_06713"; transcript_id "RvY_06713.1"; Scaffold003 rebuild transcript 832832 834644 . + . gene_id "RvY_06714"; transcript_id "RvY_06714.1"; annotation "hypothetical protein."; Pfam "[DAO] FAD dependent oxidoreductase|[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; Scaffold003 rebuild exon 832832 833358 . + . gene_id "RvY_06714"; transcript_id "RvY_06714.1"; Scaffold003 rebuild exon 833509 834317 . + . gene_id "RvY_06714"; transcript_id "RvY_06714.1"; Scaffold003 rebuild exon 834388 834644 . + . gene_id "RvY_06714"; transcript_id "RvY_06714.1"; Scaffold003 rebuild transcript 841672 842160 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 841672 842160 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.1"; Scaffold003 rebuild transcript 837447 842160 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 837447 837512 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.2"; Scaffold003 rebuild exon 841843 842160 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.2"; Scaffold003 rebuild transcript 841899 842225 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 841899 842225 . - . gene_id "RvY_06715"; transcript_id "RvY_06715.3"; Scaffold003 rebuild transcript 843856 848361 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; gene_name "HormR"; annotation "hypothetical protein."; Pfam "[HRM] Hormone receptor domain"; CDD "Domain present in hormone receptors."; Scaffold003 rebuild exon 843856 844055 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild exon 844203 844310 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild exon 844374 844856 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild exon 845089 845556 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild exon 845737 845841 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild exon 846363 847029 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild exon 848284 848361 . - . gene_id "RvY_06716"; transcript_id "RvY_06716.1"; Scaffold003 rebuild transcript 851580 852603 . + . gene_id "RvY_06717"; transcript_id "RvY_06717.1"; annotation "hypothetical protein."; similar_genes "ROP1L_MACFA(e-value:2.8e-15;bit-score:80.0)"; Scaffold003 rebuild exon 851580 851843 . + . gene_id "RvY_06717"; transcript_id "RvY_06717.1"; Scaffold003 rebuild exon 851942 852103 . + . gene_id "RvY_06717"; transcript_id "RvY_06717.1"; Scaffold003 rebuild exon 852176 852351 . + . gene_id "RvY_06717"; transcript_id "RvY_06717.1"; Scaffold003 rebuild exon 852432 852603 . + . gene_id "RvY_06717"; transcript_id "RvY_06717.1"; Scaffold003 rebuild transcript 852853 854731 . - . gene_id "RvY_06718"; transcript_id "RvY_06718.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 852853 852971 . - . gene_id "RvY_06718"; transcript_id "RvY_06718.1"; Scaffold003 rebuild exon 853084 853320 . - . gene_id "RvY_06718"; transcript_id "RvY_06718.1"; Scaffold003 rebuild exon 853403 853600 . - . gene_id "RvY_06718"; transcript_id "RvY_06718.1"; Scaffold003 rebuild exon 854686 854731 . - . gene_id "RvY_06718"; transcript_id "RvY_06718.1"; Scaffold003 rebuild transcript 855213 860916 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.1"; gene_name "(1)NPY5R(2)HCRTR1"; annotation "(1)neuropeptide Y receptor Y5(2)hypocretin (orexin) receptor 1(3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04207(2)K04238"; Scaffold003 rebuild exon 855213 855701 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.1"; Scaffold003 rebuild exon 856447 856671 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.1"; Scaffold003 rebuild exon 856777 857148 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.1"; Scaffold003 rebuild exon 858602 859000 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.1"; Scaffold003 rebuild exon 860653 860916 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.1"; Scaffold003 rebuild transcript 856249 860916 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.2"; gene_name "(1)NPY5R(2)HCRTR1"; annotation "(1)neuropeptide Y receptor Y5(2)hypocretin (orexin) receptor 1(3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04207(2)K04238"; Scaffold003 rebuild exon 856249 856671 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.2"; Scaffold003 rebuild exon 856777 857148 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.2"; Scaffold003 rebuild exon 858602 859000 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.2"; Scaffold003 rebuild exon 860653 860916 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.2"; Scaffold003 rebuild transcript 856750 860916 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.3"; gene_name "(1)NPY5R(2)HCRTR1"; annotation "(1)neuropeptide Y receptor Y5(2)hypocretin (orexin) receptor 1(3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04207(2)K04238"; Scaffold003 rebuild exon 856750 857148 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.3"; Scaffold003 rebuild exon 858602 859000 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.3"; Scaffold003 rebuild exon 860653 860916 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.3"; Scaffold003 rebuild transcript 855213 857022 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.4"; gene_name "(1)NPY5R(2)HCRTR1"; annotation "(1)neuropeptide Y receptor Y5(2)hypocretin (orexin) receptor 1(3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04207(2)K04238"; Scaffold003 rebuild exon 855213 855701 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.4"; Scaffold003 rebuild exon 856447 856671 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.4"; Scaffold003 rebuild exon 856777 857022 . - . gene_id "RvY_06719"; transcript_id "RvY_06719.4"; Scaffold003 rebuild transcript 863011 865074 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 863011 863062 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild exon 863137 863886 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild exon 864284 864314 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild exon 864379 864439 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild exon 864600 864687 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild exon 864776 864935 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild exon 865029 865074 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.1"; Scaffold003 rebuild transcript 863011 864428 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 863011 863062 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.2"; Scaffold003 rebuild exon 863137 863886 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.2"; Scaffold003 rebuild exon 864201 864314 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.2"; Scaffold003 rebuild exon 864379 864428 . - . gene_id "RvY_06720"; transcript_id "RvY_06720.2"; Scaffold003 rebuild transcript 867117 869082 . + . gene_id "RvY_06721"; transcript_id "RvY_06721.1"; annotation "hypothetical protein."; Pfam "[XK-related] XK-related protein"; Scaffold003 rebuild exon 867117 867350 . + . gene_id "RvY_06721"; transcript_id "RvY_06721.1"; Scaffold003 rebuild exon 867727 868636 . + . gene_id "RvY_06721"; transcript_id "RvY_06721.1"; Scaffold003 rebuild exon 868910 869082 . + . gene_id "RvY_06721"; transcript_id "RvY_06721.1"; Scaffold003 rebuild transcript 869149 869600 . + . gene_id "RvY_06722"; transcript_id "RvY_06722.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 869149 869320 . + . gene_id "RvY_06722"; transcript_id "RvY_06722.1"; Scaffold003 rebuild exon 869383 869600 . + . gene_id "RvY_06722"; transcript_id "RvY_06722.1"; Scaffold003 rebuild transcript 870063 870485 . - . gene_id "RvY_06723"; transcript_id "RvY_06723.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 870063 870391 . - . gene_id "RvY_06723"; transcript_id "RvY_06723.1"; Scaffold003 rebuild exon 870467 870485 . - . gene_id "RvY_06723"; transcript_id "RvY_06723.1"; Scaffold003 rebuild transcript 871357 872450 . - . gene_id "RvY_06724"; transcript_id "RvY_06724.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 871357 871396 . - . gene_id "RvY_06724"; transcript_id "RvY_06724.1"; Scaffold003 rebuild exon 871506 871589 . - . gene_id "RvY_06724"; transcript_id "RvY_06724.1"; Scaffold003 rebuild exon 871889 871996 . - . gene_id "RvY_06724"; transcript_id "RvY_06724.1"; Scaffold003 rebuild exon 872080 872342 . - . gene_id "RvY_06724"; transcript_id "RvY_06724.1"; Scaffold003 rebuild exon 872403 872450 . - . gene_id "RvY_06724"; transcript_id "RvY_06724.1"; Scaffold003 rebuild transcript 872602 873114 . - . gene_id "RvY_06725"; transcript_id "RvY_06725.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 872602 872806 . - . gene_id "RvY_06725"; transcript_id "RvY_06725.1"; Scaffold003 rebuild exon 872873 873114 . - . gene_id "RvY_06725"; transcript_id "RvY_06725.1"; Scaffold003 rebuild transcript 875217 876067 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.1"; gene_name "LepA"; annotation "hypothetical protein."; Pfam "[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype."; similar_genes "GUF1_MOUSE(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 875217 875342 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.1"; Scaffold003 rebuild exon 875407 875468 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.1"; Scaffold003 rebuild exon 875682 875863 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.1"; Scaffold003 rebuild exon 875922 876067 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.1"; Scaffold003 rebuild transcript 873949 876067 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.2"; gene_name "LepA"; annotation "hypothetical protein."; Pfam "[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype."; similar_genes "GUF1_MOUSE(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 873949 873955 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.2"; Scaffold003 rebuild exon 875296 875342 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.2"; Scaffold003 rebuild exon 875407 875468 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.2"; Scaffold003 rebuild exon 875682 875863 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.2"; Scaffold003 rebuild exon 875922 876067 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.2"; Scaffold003 rebuild transcript 875380 876067 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.3"; gene_name "LepA"; annotation "hypothetical protein."; Pfam "[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype."; similar_genes "GUF1_MOUSE(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 875380 875468 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.3"; Scaffold003 rebuild exon 875682 875863 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.3"; Scaffold003 rebuild exon 875922 876067 . - . gene_id "RvY_06726"; transcript_id "RvY_06726.3"; Scaffold003 rebuild transcript 876489 878453 . + . gene_id "RvY_06727"; transcript_id "RvY_06727.1"; annotation "hypothetical protein."; Pfam "[RNase_Zc3h12a] Zc3h12a-like Ribonuclease NYN domain"; Scaffold003 rebuild exon 876489 876727 . + . gene_id "RvY_06727"; transcript_id "RvY_06727.1"; Scaffold003 rebuild exon 876906 877277 . + . gene_id "RvY_06727"; transcript_id "RvY_06727.1"; Scaffold003 rebuild exon 877535 878012 . + . gene_id "RvY_06727"; transcript_id "RvY_06727.1"; Scaffold003 rebuild exon 878091 878453 . + . gene_id "RvY_06727"; transcript_id "RvY_06727.1"; Scaffold003 rebuild transcript 878935 880983 . + . gene_id "RvY_06728"; transcript_id "RvY_06728.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 878935 879202 . + . gene_id "RvY_06728"; transcript_id "RvY_06728.1"; Scaffold003 rebuild exon 879502 879951 . + . gene_id "RvY_06728"; transcript_id "RvY_06728.1"; Scaffold003 rebuild exon 880063 880503 . + . gene_id "RvY_06728"; transcript_id "RvY_06728.1"; Scaffold003 rebuild exon 880640 880983 . + . gene_id "RvY_06728"; transcript_id "RvY_06728.1"; Scaffold003 rebuild transcript 881292 883755 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; gene_name "SMU1"; annotation "WD40 repeat-containing protein SMU1"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K13111"; similar_genes "SMU1_HUMAN(e-value:1.7e-159;bit-score:559.0)"; Scaffold003 rebuild exon 881292 881473 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 881699 882069 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 882132 882259 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 882354 882449 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 882512 882652 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 882735 882974 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 883035 883187 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 883324 883467 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 883603 883669 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild exon 883730 883755 . - . gene_id "RvY_06729"; transcript_id "RvY_06729.1"; Scaffold003 rebuild transcript 885359 887287 . + . gene_id "RvY_06730"; transcript_id "RvY_06730.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 885359 886263 . + . gene_id "RvY_06730"; transcript_id "RvY_06730.1"; Scaffold003 rebuild exon 886548 886881 . + . gene_id "RvY_06730"; transcript_id "RvY_06730.1"; Scaffold003 rebuild exon 886949 887287 . + . gene_id "RvY_06730"; transcript_id "RvY_06730.1"; Scaffold003 rebuild transcript 888490 889975 . - . gene_id "RvY_06731"; transcript_id "RvY_06731.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 888490 888896 . - . gene_id "RvY_06731"; transcript_id "RvY_06731.1"; Scaffold003 rebuild exon 889774 889975 . - . gene_id "RvY_06731"; transcript_id "RvY_06731.1"; Scaffold003 rebuild transcript 896516 899717 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; gene_name "Ndr"; annotation "hypothetical protein."; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Ndr] Ndr family"; CDD "Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.)."; Scaffold003 rebuild exon 896516 896565 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 896802 896889 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 896949 897048 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 897425 897490 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 897635 897735 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 897903 898067 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 898799 898859 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 898947 899009 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 899158 899278 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 899381 899489 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild exon 899556 899717 . - . gene_id "RvY_06732"; transcript_id "RvY_06732.1"; Scaffold003 rebuild transcript 900095 900310 . - . gene_id "RvY_06733"; transcript_id "RvY_06733.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 900095 900310 . - . gene_id "RvY_06733"; transcript_id "RvY_06733.1"; Scaffold003 rebuild transcript 901364 902169 . + . gene_id "RvY_06734"; transcript_id "RvY_06734.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 901364 901681 . + . gene_id "RvY_06734"; transcript_id "RvY_06734.1"; Scaffold003 rebuild exon 901879 902169 . + . gene_id "RvY_06734"; transcript_id "RvY_06734.1"; Scaffold003 rebuild transcript 902942 908415 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; gene_name "2a30"; annotation "Solute carrier family 12 member 3"; Pfam "[AA_permease] Amino acid permease"; CDD "K-Cl cotransporter."; KO "K14426"; similar_genes "S12A3_PSEAM(e-value:1.8e-65;bit-score:247.0)"; Scaffold003 rebuild exon 902942 903125 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 903202 903541 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 903624 903800 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 903859 904231 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 904293 904540 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 904700 904819 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 904881 904982 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 905048 905171 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 905235 905530 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 905593 905822 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 905911 905957 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 906020 906529 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 906597 906776 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild exon 907921 908415 . - . gene_id "RvY_06735"; transcript_id "RvY_06735.1"; Scaffold003 rebuild transcript 909572 911629 . + . gene_id "RvY_06736"; transcript_id "RvY_06736.1"; gene_name "RING"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; CDD "Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)"; Scaffold003 rebuild exon 909572 909902 . + . gene_id "RvY_06736"; transcript_id "RvY_06736.1"; Scaffold003 rebuild exon 909983 910274 . + . gene_id "RvY_06736"; transcript_id "RvY_06736.1"; Scaffold003 rebuild exon 910347 910918 . + . gene_id "RvY_06736"; transcript_id "RvY_06736.1"; Scaffold003 rebuild exon 910986 911629 . + . gene_id "RvY_06736"; transcript_id "RvY_06736.1"; Scaffold003 rebuild transcript 912360 918756 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; gene_name "(1)K01529(2,3,4)ATPase-IIC_X-K"; annotation "(1,2,3)Sodium/potassium-transporting ATPase subunit alpha-1(4)putative Sodium/potassium-transporting ATPase subunit alpha-1"; Pfam "(1,2,3)[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1,2,4)[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|(1,2,3)[Hydrolase_3] haloacid dehalogenase-like hydrolase|(1,2,3)[HAD] haloacid dehalogenase-like hydrolase|(1,2,3)[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "(1)K01529"; similar_genes "(1,2,3)AT1A1_RAT(e-value:4.1e-84;bit-score:308.0)(4)AT1A1_OREMO(e-value:2.0e-41;bit-score:167.0)"; Scaffold003 rebuild exon 912360 912680 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 912751 913020 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 913211 913846 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 913916 914114 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 914230 914477 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 914575 915030 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 915129 915650 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 915717 915986 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 916051 916181 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 916267 916368 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 916464 916495 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild exon 918596 918756 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.1"; Scaffold003 rebuild transcript 912265 916299 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; gene_name "(1)K01529(2,3,4)ATPase-IIC_X-K"; annotation "(1,2,3)Sodium/potassium-transporting ATPase subunit alpha-1(4)putative Sodium/potassium-transporting ATPase subunit alpha-1"; Pfam "(1,2,3)[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1,2,4)[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|(1,2,3)[Hydrolase_3] haloacid dehalogenase-like hydrolase|(1,2,3)[HAD] haloacid dehalogenase-like hydrolase|(1,2,3)[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "(1)K01529"; similar_genes "(1,2,3)AT1A1_RAT(e-value:4.1e-84;bit-score:308.0)(4)AT1A1_OREMO(e-value:2.0e-41;bit-score:167.0)"; Scaffold003 rebuild exon 912265 912345 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 912429 912680 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 912751 913020 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 913211 913846 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 913916 914114 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 914230 914477 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 914575 915030 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 915129 915650 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 915717 916181 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild exon 916267 916299 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.2"; Scaffold003 rebuild transcript 913295 916584 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; gene_name "(1)K01529(2,3,4)ATPase-IIC_X-K"; annotation "(1,2,3)Sodium/potassium-transporting ATPase subunit alpha-1(4)putative Sodium/potassium-transporting ATPase subunit alpha-1"; Pfam "(1,2,3)[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1,2,4)[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|(1,2,3)[Hydrolase_3] haloacid dehalogenase-like hydrolase|(1,2,3)[HAD] haloacid dehalogenase-like hydrolase|(1,2,3)[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "(1)K01529"; similar_genes "(1,2,3)AT1A1_RAT(e-value:4.1e-84;bit-score:308.0)(4)AT1A1_OREMO(e-value:2.0e-41;bit-score:167.0)"; Scaffold003 rebuild exon 913295 913846 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 913916 914114 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 914230 914477 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 914575 915030 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 915129 915650 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 915717 915986 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 916051 916181 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 916267 916368 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild exon 916464 916584 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.3"; Scaffold003 rebuild transcript 912360 914597 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.4"; gene_name "(1)K01529(2,3,4)ATPase-IIC_X-K"; annotation "(1,2,3)Sodium/potassium-transporting ATPase subunit alpha-1(4)putative Sodium/potassium-transporting ATPase subunit alpha-1"; Pfam "(1,2,3)[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(1,2,4)[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|(1,2,3)[Hydrolase_3] haloacid dehalogenase-like hydrolase|(1,2,3)[HAD] haloacid dehalogenase-like hydrolase|(1,2,3)[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; KO "(1)K01529"; similar_genes "(1,2,3)AT1A1_RAT(e-value:4.1e-84;bit-score:308.0)(4)AT1A1_OREMO(e-value:2.0e-41;bit-score:167.0)"; Scaffold003 rebuild exon 912360 912680 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.4"; Scaffold003 rebuild exon 912751 913020 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.4"; Scaffold003 rebuild exon 913211 913846 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.4"; Scaffold003 rebuild exon 913916 914114 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.4"; Scaffold003 rebuild exon 914230 914597 . + . gene_id "RvY_06737"; transcript_id "RvY_06737.4"; Scaffold003 rebuild transcript 926146 926637 . + . gene_id "RvY_06738"; transcript_id "RvY_06738.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 926146 926637 . + . gene_id "RvY_06738"; transcript_id "RvY_06738.1"; Scaffold003 rebuild transcript 929443 931579 . - . gene_id "RvY_06739"; transcript_id "RvY_06739.1"; gene_name "PRK12678"; annotation "hypothetical protein."; CDD "transcription termination factor Rho; Provisional"; similar_genes "GRP1_PETHY(e-value:8.9e-10;bit-score:62.0)"; Scaffold003 rebuild exon 929443 930647 . - . gene_id "RvY_06739"; transcript_id "RvY_06739.1"; Scaffold003 rebuild exon 931354 931579 . - . gene_id "RvY_06739"; transcript_id "RvY_06739.1"; Scaffold003 rebuild transcript 934179 936372 . + . gene_id "RvY_06740"; transcript_id "RvY_06740.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 934179 934230 . + . gene_id "RvY_06740"; transcript_id "RvY_06740.1"; Scaffold003 rebuild exon 934335 934454 . + . gene_id "RvY_06740"; transcript_id "RvY_06740.1"; Scaffold003 rebuild exon 934526 936372 . + . gene_id "RvY_06740"; transcript_id "RvY_06740.1"; Scaffold003 rebuild transcript 936680 937476 . - . gene_id "RvY_06741"; transcript_id "RvY_06741.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 936680 936834 . - . gene_id "RvY_06741"; transcript_id "RvY_06741.1"; Scaffold003 rebuild exon 937338 937476 . - . gene_id "RvY_06741"; transcript_id "RvY_06741.1"; Scaffold003 rebuild transcript 938330 938530 . + . gene_id "RvY_06742"; transcript_id "RvY_06742.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 938330 938530 . + . gene_id "RvY_06742"; transcript_id "RvY_06742.1"; Scaffold003 rebuild transcript 938744 939823 . - . gene_id "RvY_06743"; transcript_id "RvY_06743.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold003 rebuild exon 938744 938883 . - . gene_id "RvY_06743"; transcript_id "RvY_06743.1"; Scaffold003 rebuild exon 938995 939054 . - . gene_id "RvY_06743"; transcript_id "RvY_06743.1"; Scaffold003 rebuild exon 939177 939334 . - . gene_id "RvY_06743"; transcript_id "RvY_06743.1"; Scaffold003 rebuild exon 939392 939546 . - . gene_id "RvY_06743"; transcript_id "RvY_06743.1"; Scaffold003 rebuild exon 939614 939823 . - . gene_id "RvY_06743"; transcript_id "RvY_06743.1"; Scaffold003 rebuild transcript 940331 941400 . + . gene_id "RvY_06744"; transcript_id "RvY_06744.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold003 rebuild exon 940331 940439 . + . gene_id "RvY_06744"; transcript_id "RvY_06744.1"; Scaffold003 rebuild exon 940508 940660 . + . gene_id "RvY_06744"; transcript_id "RvY_06744.1"; Scaffold003 rebuild exon 940727 940844 . + . gene_id "RvY_06744"; transcript_id "RvY_06744.1"; Scaffold003 rebuild exon 940907 941085 . + . gene_id "RvY_06744"; transcript_id "RvY_06744.1"; Scaffold003 rebuild exon 941177 941400 . + . gene_id "RvY_06744"; transcript_id "RvY_06744.1"; Scaffold003 rebuild transcript 942735 943973 . + . gene_id "RvY_06745"; transcript_id "RvY_06745.1"; gene_name "COQ3"; annotation "hexaprenyldihydroxybenzoate methyltransferase [EC:2.1.1.114]"; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "3-demethylubiquinone-9 3-methyltransferase; Provisional"; EC "EC2.1.1.114|EC2.1.1.64"; KO "K00591"; similar_genes "UBIG_XYLFA(e-value:3.9e-06;bit-score:49.0)"; Scaffold003 rebuild exon 942735 942788 . + . gene_id "RvY_06745"; transcript_id "RvY_06745.1"; Scaffold003 rebuild exon 942846 943415 . + . gene_id "RvY_06745"; transcript_id "RvY_06745.1"; Scaffold003 rebuild exon 943632 943973 . + . gene_id "RvY_06745"; transcript_id "RvY_06745.1"; Scaffold003 rebuild transcript 944255 944452 . - . gene_id "RvY_06746"; transcript_id "RvY_06746.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 944255 944452 . - . gene_id "RvY_06746"; transcript_id "RvY_06746.1"; Scaffold003 rebuild transcript 945368 946348 . + . gene_id "RvY_06747"; transcript_id "RvY_06747.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 945368 945866 . + . gene_id "RvY_06747"; transcript_id "RvY_06747.1"; Scaffold003 rebuild exon 946014 946348 . + . gene_id "RvY_06747"; transcript_id "RvY_06747.1"; Scaffold003 rebuild transcript 948267 948446 . - . gene_id "RvY_06748"; transcript_id "RvY_06748.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 948267 948446 . - . gene_id "RvY_06748"; transcript_id "RvY_06748.1"; Scaffold003 rebuild transcript 949504 949974 . - . gene_id "RvY_06749"; transcript_id "RvY_06749.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 949504 949974 . - . gene_id "RvY_06749"; transcript_id "RvY_06749.1"; Scaffold003 rebuild transcript 950939 951373 . - . gene_id "RvY_06750"; transcript_id "RvY_06750.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 950939 951373 . - . gene_id "RvY_06750"; transcript_id "RvY_06750.1"; Scaffold003 rebuild transcript 951857 952294 . - . gene_id "RvY_06751"; transcript_id "RvY_06751.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 951857 952294 . - . gene_id "RvY_06751"; transcript_id "RvY_06751.1"; Scaffold003 rebuild transcript 952593 953417 . - . gene_id "RvY_06752"; transcript_id "RvY_06752.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 952593 952773 . - . gene_id "RvY_06752"; transcript_id "RvY_06752.1"; Scaffold003 rebuild exon 953054 953326 . - . gene_id "RvY_06752"; transcript_id "RvY_06752.1"; Scaffold003 rebuild exon 953398 953417 . - . gene_id "RvY_06752"; transcript_id "RvY_06752.1"; Scaffold003 rebuild transcript 953653 955083 . - . gene_id "RvY_06753"; transcript_id "RvY_06753.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 953653 953842 . - . gene_id "RvY_06753"; transcript_id "RvY_06753.1"; Scaffold003 rebuild exon 955031 955083 . - . gene_id "RvY_06753"; transcript_id "RvY_06753.1"; Scaffold003 rebuild transcript 955337 957885 . + . gene_id "RvY_06754"; transcript_id "RvY_06754.1"; gene_name "COG5638"; annotation "hypothetical protein."; Pfam "[NUC153]"; CDD "Uncharacterized conserved protein [Function unknown]"; similar_genes "ESF1_RAT(e-value:1.9e-18;bit-score:90.0)"; Scaffold003 rebuild exon 955337 955712 . + . gene_id "RvY_06754"; transcript_id "RvY_06754.1"; Scaffold003 rebuild exon 955896 956716 . + . gene_id "RvY_06754"; transcript_id "RvY_06754.1"; Scaffold003 rebuild exon 956977 957885 . + . gene_id "RvY_06754"; transcript_id "RvY_06754.1"; Scaffold003 rebuild transcript 958181 958516 . - . gene_id "RvY_06755"; transcript_id "RvY_06755.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 958181 958516 . - . gene_id "RvY_06755"; transcript_id "RvY_06755.1"; Scaffold003 rebuild transcript 959750 959902 . - . gene_id "RvY_06756"; transcript_id "RvY_06756.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 959750 959902 . - . gene_id "RvY_06756"; transcript_id "RvY_06756.1"; Scaffold003 rebuild transcript 961418 964441 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; annotation "hypothetical protein."; Pfam "[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat"; Scaffold003 rebuild exon 961418 961444 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; Scaffold003 rebuild exon 961934 962257 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; Scaffold003 rebuild exon 962326 962473 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; Scaffold003 rebuild exon 962718 962968 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; Scaffold003 rebuild exon 963192 963511 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; Scaffold003 rebuild exon 963805 964441 . + . gene_id "RvY_06757"; transcript_id "RvY_06757.1"; Scaffold003 rebuild transcript 965094 968149 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; gene_name "(1)POMT(2)PMT1"; annotation "(1)dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109](2)hypothetical protein."; Pfam "[PMT] Dolichyl-phosphate-mannose-protein mannosyltransferase|(1)[MIR]"; CDD "Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]"; EC "EC2.4.1.109"; KO "(1)K00728"; similar_genes "(1)POMT1_DROPS(e-value:4.2e-18;bit-score:89.0)(2)POMT1_DROME(e-value:2.1e-15;bit-score:80.0)"; Scaffold003 rebuild exon 965094 965329 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 965393 965544 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 965673 966244 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 966306 966425 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 966507 966712 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 966786 966882 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 967032 967260 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 967316 967518 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 967599 967912 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild exon 967981 968149 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.1"; Scaffold003 rebuild transcript 965094 966716 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.2"; gene_name "(1)POMT(2)PMT1"; annotation "(1)dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109](2)hypothetical protein."; Pfam "[PMT] Dolichyl-phosphate-mannose-protein mannosyltransferase|(1)[MIR]"; CDD "Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]"; EC "EC2.4.1.109"; KO "(1)K00728"; similar_genes "(1)POMT1_DROPS(e-value:4.2e-18;bit-score:89.0)(2)POMT1_DROME(e-value:2.1e-15;bit-score:80.0)"; Scaffold003 rebuild exon 965094 965329 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.2"; Scaffold003 rebuild exon 965393 965544 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.2"; Scaffold003 rebuild exon 965673 966244 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.2"; Scaffold003 rebuild exon 966306 966425 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.2"; Scaffold003 rebuild exon 966507 966716 . + . gene_id "RvY_06758"; transcript_id "RvY_06758.2"; Scaffold003 rebuild transcript 970963 972959 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP1A1_LIZAU(e-value:7.6e-07;bit-score:52.0)"; Scaffold003 rebuild exon 970963 971006 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild exon 971082 971222 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild exon 971303 971443 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild exon 971510 971770 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild exon 971839 972426 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild exon 972486 972585 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild exon 972702 972959 . - . gene_id "RvY_06759"; transcript_id "RvY_06759.1"; Scaffold003 rebuild transcript 975080 975328 . + . gene_id "RvY_06760"; transcript_id "RvY_06760.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 975080 975328 . + . gene_id "RvY_06760"; transcript_id "RvY_06760.1"; Scaffold003 rebuild transcript 977007 977336 . + . gene_id "RvY_06761"; transcript_id "RvY_06761.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 977007 977084 . + . gene_id "RvY_06761"; transcript_id "RvY_06761.1"; Scaffold003 rebuild exon 977169 977336 . + . gene_id "RvY_06761"; transcript_id "RvY_06761.1"; Scaffold003 rebuild transcript 977618 979659 . + . gene_id "RvY_06762"; transcript_id "RvY_06762.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold003 rebuild exon 977618 978524 . + . gene_id "RvY_06762"; transcript_id "RvY_06762.1"; Scaffold003 rebuild exon 978623 978881 . + . gene_id "RvY_06762"; transcript_id "RvY_06762.1"; Scaffold003 rebuild exon 979089 979393 . + . gene_id "RvY_06762"; transcript_id "RvY_06762.1"; Scaffold003 rebuild exon 979634 979659 . + . gene_id "RvY_06762"; transcript_id "RvY_06762.1"; Scaffold003 rebuild transcript 982157 982562 . - . gene_id "RvY_06763"; transcript_id "RvY_06763.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 982157 982220 . - . gene_id "RvY_06763"; transcript_id "RvY_06763.1"; Scaffold003 rebuild exon 982285 982562 . - . gene_id "RvY_06763"; transcript_id "RvY_06763.1"; Scaffold003 rebuild transcript 983884 984547 . + . gene_id "RvY_06764"; transcript_id "RvY_06764.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 983884 984201 . + . gene_id "RvY_06764"; transcript_id "RvY_06764.1"; Scaffold003 rebuild exon 984287 984547 . + . gene_id "RvY_06764"; transcript_id "RvY_06764.1"; Scaffold003 rebuild transcript 986437 989622 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold003 rebuild exon 986437 986519 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; Scaffold003 rebuild exon 986603 986865 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; Scaffold003 rebuild exon 987066 987237 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; Scaffold003 rebuild exon 987315 987580 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; Scaffold003 rebuild exon 987654 987897 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; Scaffold003 rebuild exon 989577 989622 . - . gene_id "RvY_06765"; transcript_id "RvY_06765.1"; Scaffold003 rebuild transcript 993776 993970 . - . gene_id "RvY_06766"; transcript_id "RvY_06766.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 993776 993970 . - . gene_id "RvY_06766"; transcript_id "RvY_06766.1"; Scaffold003 rebuild transcript 995615 995884 . - . gene_id "RvY_06767"; transcript_id "RvY_06767.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 995615 995884 . - . gene_id "RvY_06767"; transcript_id "RvY_06767.1"; Scaffold003 rebuild transcript 997974 998588 . + . gene_id "RvY_06768"; transcript_id "RvY_06768.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 997974 998588 . + . gene_id "RvY_06768"; transcript_id "RvY_06768.1"; Scaffold003 rebuild transcript 998990 999630 . - . gene_id "RvY_06769"; transcript_id "RvY_06769.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 998990 999120 . - . gene_id "RvY_06769"; transcript_id "RvY_06769.1"; Scaffold003 rebuild exon 999603 999630 . - . gene_id "RvY_06769"; transcript_id "RvY_06769.1"; Scaffold003 rebuild transcript 999417 999909 . + . gene_id "RvY_06770"; transcript_id "RvY_06770.1"; annotation "hypothetical protein."; Pfam "[zf-LITAF-like] LITAF-like zinc ribbon domain"; similar_genes "LITAF_CHICK(e-value:7.0e-14;bit-score:75.0)"; Scaffold003 rebuild exon 999417 999508 . + . gene_id "RvY_06770"; transcript_id "RvY_06770.1"; Scaffold003 rebuild exon 999623 999748 . + . gene_id "RvY_06770"; transcript_id "RvY_06770.1"; Scaffold003 rebuild exon 999831 999909 . + . gene_id "RvY_06770"; transcript_id "RvY_06770.1"; Scaffold003 rebuild transcript 1002080 1003149 . - . gene_id "RvY_06771"; transcript_id "RvY_06771.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1002080 1002427 . - . gene_id "RvY_06771"; transcript_id "RvY_06771.1"; Scaffold003 rebuild exon 1002494 1002525 . - . gene_id "RvY_06771"; transcript_id "RvY_06771.1"; Scaffold003 rebuild exon 1002605 1002985 . - . gene_id "RvY_06771"; transcript_id "RvY_06771.1"; Scaffold003 rebuild exon 1003104 1003149 . - . gene_id "RvY_06771"; transcript_id "RvY_06771.1"; Scaffold003 rebuild transcript 1004394 1005081 . - . gene_id "RvY_06772"; transcript_id "RvY_06772.1"; annotation "hypothetical protein."; similar_genes "K1C9_CANFA(e-value:3.4e-07;bit-score:53.0)"; Scaffold003 rebuild exon 1004394 1004525 . - . gene_id "RvY_06772"; transcript_id "RvY_06772.1"; Scaffold003 rebuild exon 1004606 1004952 . - . gene_id "RvY_06772"; transcript_id "RvY_06772.1"; Scaffold003 rebuild exon 1005039 1005081 . - . gene_id "RvY_06772"; transcript_id "RvY_06772.1"; Scaffold003 rebuild transcript 1005881 1006763 . - . gene_id "RvY_06773"; transcript_id "RvY_06773.1"; annotation "hypothetical protein."; EC "EC3.6.1.-"; similar_genes "DHX9_MOUSE(e-value:6.1e-13;bit-score:72.0)"; Scaffold003 rebuild exon 1005881 1006354 . - . gene_id "RvY_06773"; transcript_id "RvY_06773.1"; Scaffold003 rebuild exon 1006439 1006653 . - . gene_id "RvY_06773"; transcript_id "RvY_06773.1"; Scaffold003 rebuild exon 1006724 1006763 . - . gene_id "RvY_06773"; transcript_id "RvY_06773.1"; Scaffold003 rebuild transcript 1007646 1007906 . - . gene_id "RvY_06774"; transcript_id "RvY_06774.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1007646 1007906 . - . gene_id "RvY_06774"; transcript_id "RvY_06774.1"; Scaffold003 rebuild transcript 1010667 1017005 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; gene_name "BRSK"; annotation "BR serine/threonine-protein kinase 1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08796"; similar_genes "BRSK1_HUMAN(e-value:1.3e-129;bit-score:460.0)"; Scaffold003 rebuild exon 1010667 1011676 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1011783 1012059 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1012125 1012314 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1012381 1013040 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1013106 1013498 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1013588 1013700 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1013835 1013921 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1014031 1014177 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1014333 1014401 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1014695 1014728 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1014825 1014941 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1015508 1015648 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1016105 1016190 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1016420 1016514 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild exon 1016765 1017005 . - . gene_id "RvY_06775"; transcript_id "RvY_06775.1"; Scaffold003 rebuild transcript 1017137 1017658 . + . gene_id "RvY_06776"; transcript_id "RvY_06776.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1017137 1017234 . + . gene_id "RvY_06776"; transcript_id "RvY_06776.1"; Scaffold003 rebuild exon 1017433 1017658 . + . gene_id "RvY_06776"; transcript_id "RvY_06776.1"; Scaffold003 rebuild transcript 1020415 1024086 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; gene_name "(2)KRAB"; annotation "(1)hypothetical protein.(2)KRAB domain-containing zinc finger protein"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; KO "(2)K09228"; similar_genes "(1)ZN366_HUMAN(e-value:5.4e-14;bit-score:76.0)(2)ZNF84_HUMAN(e-value:2.1e-17;bit-score:87.0)"; Scaffold003 rebuild exon 1020415 1020903 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; Scaffold003 rebuild exon 1020990 1021604 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; Scaffold003 rebuild exon 1021997 1022034 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; Scaffold003 rebuild exon 1022142 1022344 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; Scaffold003 rebuild exon 1023523 1023725 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; Scaffold003 rebuild exon 1024072 1024086 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.1"; Scaffold003 rebuild transcript 1020415 1024086 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; gene_name "(2)KRAB"; annotation "(1)hypothetical protein.(2)KRAB domain-containing zinc finger protein"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; KO "(2)K09228"; similar_genes "(1)ZN366_HUMAN(e-value:5.4e-14;bit-score:76.0)(2)ZNF84_HUMAN(e-value:2.1e-17;bit-score:87.0)"; Scaffold003 rebuild exon 1020415 1020903 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; Scaffold003 rebuild exon 1020990 1021601 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; Scaffold003 rebuild exon 1021997 1022034 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; Scaffold003 rebuild exon 1022142 1022344 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; Scaffold003 rebuild exon 1023523 1023725 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; Scaffold003 rebuild exon 1024072 1024086 . - . gene_id "RvY_06777"; transcript_id "RvY_06777.2"; Scaffold003 rebuild transcript 1028766 1032409 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; gene_name "SelB_euk"; annotation "putative Selenocysteine-specific elongation factor"; Pfam "[MMR_HSR1] 50S ribosome-binding GTPase|[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of Scaffold003 rebuild exon 1028766 1028971 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1029908 1030079 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1030339 1030676 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1030897 1031068 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1031146 1031412 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1031606 1031683 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1031811 1031958 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild exon 1032090 1032409 . - . gene_id "RvY_06778"; transcript_id "RvY_06778.1"; Scaffold003 rebuild transcript 1032718 1033456 . - . gene_id "RvY_06779"; transcript_id "RvY_06779.1"; annotation "hypothetical protein."; Pfam "[DUF1279]"; Scaffold003 rebuild exon 1032718 1032952 . - . gene_id "RvY_06779"; transcript_id "RvY_06779.1"; Scaffold003 rebuild exon 1033061 1033255 . - . gene_id "RvY_06779"; transcript_id "RvY_06779.1"; Scaffold003 rebuild exon 1033317 1033456 . - . gene_id "RvY_06779"; transcript_id "RvY_06779.1"; Scaffold003 rebuild transcript 1033160 1033369 . + . gene_id "RvY_06780"; transcript_id "RvY_06780.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1033160 1033369 . + . gene_id "RvY_06780"; transcript_id "RvY_06780.1"; Scaffold003 rebuild transcript 1034307 1034546 . - . gene_id "RvY_06781"; transcript_id "RvY_06781.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1034307 1034546 . - . gene_id "RvY_06781"; transcript_id "RvY_06781.1"; Scaffold003 rebuild transcript 1036196 1036429 . - . gene_id "RvY_06782"; transcript_id "RvY_06782.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1036196 1036429 . - . gene_id "RvY_06782"; transcript_id "RvY_06782.1"; Scaffold003 rebuild transcript 1036401 1036724 . - . gene_id "RvY_06782"; transcript_id "RvY_06782.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1036401 1036631 . - . gene_id "RvY_06782"; transcript_id "RvY_06782.2"; Scaffold003 rebuild exon 1036722 1036724 . - . gene_id "RvY_06782"; transcript_id "RvY_06782.2"; Scaffold003 rebuild transcript 1036383 1036571 . + . gene_id "RvY_06783"; transcript_id "RvY_06783.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1036383 1036571 . + . gene_id "RvY_06783"; transcript_id "RvY_06783.1"; Scaffold003 rebuild transcript 1038679 1038858 . - . gene_id "RvY_06784"; transcript_id "RvY_06784.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1038679 1038858 . - . gene_id "RvY_06784"; transcript_id "RvY_06784.1"; Scaffold003 rebuild transcript 1040965 1044120 . + . gene_id "RvY_06785"; transcript_id "RvY_06785.1"; gene_name "3a01204"; annotation "hypothetical protein."; Pfam "[ABC2_membrane] ABC-2 type transporter|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; Scaffold003 rebuild exon 1040965 1041335 . + . gene_id "RvY_06785"; transcript_id "RvY_06785.1"; Scaffold003 rebuild exon 1041573 1041724 . + . gene_id "RvY_06785"; transcript_id "RvY_06785.1"; Scaffold003 rebuild exon 1042248 1043245 . + . gene_id "RvY_06785"; transcript_id "RvY_06785.1"; Scaffold003 rebuild exon 1043342 1043743 . + . gene_id "RvY_06785"; transcript_id "RvY_06785.1"; Scaffold003 rebuild exon 1043806 1044120 . + . gene_id "RvY_06785"; transcript_id "RvY_06785.1"; Scaffold003 rebuild transcript 1045982 1046979 . + . gene_id "RvY_06786"; transcript_id "RvY_06786.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel"; similar_genes "KCNKA_HUMAN(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 1045982 1046108 . + . gene_id "RvY_06786"; transcript_id "RvY_06786.1"; Scaffold003 rebuild exon 1046171 1046979 . + . gene_id "RvY_06786"; transcript_id "RvY_06786.1"; Scaffold003 rebuild transcript 1049727 1049906 . + . gene_id "RvY_06787"; transcript_id "RvY_06787.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1049727 1049906 . + . gene_id "RvY_06787"; transcript_id "RvY_06787.1"; Scaffold003 rebuild transcript 1050126 1050761 . - . gene_id "RvY_06788"; transcript_id "RvY_06788.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1050126 1050193 . - . gene_id "RvY_06788"; transcript_id "RvY_06788.1"; Scaffold003 rebuild exon 1050254 1050570 . - . gene_id "RvY_06788"; transcript_id "RvY_06788.1"; Scaffold003 rebuild exon 1050724 1050761 . - . gene_id "RvY_06788"; transcript_id "RvY_06788.1"; Scaffold003 rebuild transcript 1050824 1051174 . - . gene_id "RvY_06789"; transcript_id "RvY_06789.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1050824 1051174 . - . gene_id "RvY_06789"; transcript_id "RvY_06789.1"; Scaffold003 rebuild transcript 1051906 1052361 . + . gene_id "RvY_06790"; transcript_id "RvY_06790.1"; gene_name "fabG"; annotation "hypothetical protein."; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Provisional"; Scaffold003 rebuild exon 1051906 1052361 . + . gene_id "RvY_06790"; transcript_id "RvY_06790.1"; Scaffold003 rebuild transcript 1052669 1055094 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; gene_name "SIAE"; annotation "sialate O-acetylesterase [EC:3.1.1.53]"; Pfam "[DUF303]"; EC "EC3.1.1.53"; KO "K05970"; similar_genes "SIAE_MOUSE(e-value:8.2e-17;bit-score:85.0)"; Scaffold003 rebuild exon 1052669 1052935 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1053018 1053207 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1053283 1053547 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1053624 1053911 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1053973 1054111 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1054315 1054487 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1054554 1054847 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild exon 1054917 1055094 . - . gene_id "RvY_06791"; transcript_id "RvY_06791.1"; Scaffold003 rebuild transcript 1054990 1055181 . + . gene_id "RvY_06792"; transcript_id "RvY_06792.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1054990 1055181 . + . gene_id "RvY_06792"; transcript_id "RvY_06792.1"; Scaffold003 rebuild transcript 1057590 1058066 . - . gene_id "RvY_06793"; transcript_id "RvY_06793.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1057590 1057675 . - . gene_id "RvY_06793"; transcript_id "RvY_06793.1"; Scaffold003 rebuild exon 1057973 1058066 . - . gene_id "RvY_06793"; transcript_id "RvY_06793.1"; Scaffold003 rebuild transcript 1058246 1061607 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; gene_name "PCSK1"; annotation "Furin-like protease 1, isoforms 1/1-X/2"; Pfam "[Peptidase_S8] Subtilase family|[P_proprotein] Proprotein convertase P-domain"; EC "EC3.4.21.75|EC3.4.21.93"; KO "K01359"; similar_genes "FUR11_DROME(e-value:3.4e-77;bit-score:286.0)"; Scaffold003 rebuild exon 1058246 1058425 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1058491 1058847 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1059159 1059294 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1059468 1059505 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1059880 1060264 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1060321 1060487 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1060562 1060662 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1060739 1060966 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1061038 1061195 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1061258 1061391 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild exon 1061470 1061607 . + . gene_id "RvY_06794"; transcript_id "RvY_06794.1"; Scaffold003 rebuild transcript 1062974 1063920 . - . gene_id "RvY_06795"; transcript_id "RvY_06795.1"; annotation "putative Superoxide dismutase [Cu-Zn]"; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; similar_genes "SODC_ASPNG(e-value:4.8e-34;bit-score:142.0)"; Scaffold003 rebuild exon 1062974 1063170 . - . gene_id "RvY_06795"; transcript_id "RvY_06795.1"; Scaffold003 rebuild exon 1063287 1063436 . - . gene_id "RvY_06795"; transcript_id "RvY_06795.1"; Scaffold003 rebuild exon 1063668 1063920 . - . gene_id "RvY_06795"; transcript_id "RvY_06795.1"; Scaffold003 rebuild transcript 1066180 1067151 . + . gene_id "RvY_06796"; transcript_id "RvY_06796.1"; annotation "hypothetical protein."; Pfam "[DUF2452]"; similar_genes "CA050_MOUSE(e-value:1.1e-18;bit-score:91.0)"; Scaffold003 rebuild exon 1066180 1066258 . + . gene_id "RvY_06796"; transcript_id "RvY_06796.1"; Scaffold003 rebuild exon 1066333 1066670 . + . gene_id "RvY_06796"; transcript_id "RvY_06796.1"; Scaffold003 rebuild exon 1066936 1067151 . + . gene_id "RvY_06796"; transcript_id "RvY_06796.1"; Scaffold003 rebuild transcript 1067914 1068912 . + . gene_id "RvY_06797"; transcript_id "RvY_06797.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold003 rebuild exon 1067914 1068108 . + . gene_id "RvY_06797"; transcript_id "RvY_06797.1"; Scaffold003 rebuild exon 1068180 1068334 . + . gene_id "RvY_06797"; transcript_id "RvY_06797.1"; Scaffold003 rebuild exon 1068414 1068580 . + . gene_id "RvY_06797"; transcript_id "RvY_06797.1"; Scaffold003 rebuild exon 1068652 1068708 . + . gene_id "RvY_06797"; transcript_id "RvY_06797.1"; Scaffold003 rebuild exon 1068773 1068912 . + . gene_id "RvY_06797"; transcript_id "RvY_06797.1"; Scaffold003 rebuild transcript 1073090 1074347 . - . gene_id "RvY_06798"; transcript_id "RvY_06798.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 1073090 1073677 . - . gene_id "RvY_06798"; transcript_id "RvY_06798.1"; Scaffold003 rebuild exon 1073913 1074347 . - . gene_id "RvY_06798"; transcript_id "RvY_06798.1"; Scaffold003 rebuild transcript 1074772 1074972 . + . gene_id "RvY_06799"; transcript_id "RvY_06799.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1074772 1074972 . + . gene_id "RvY_06799"; transcript_id "RvY_06799.1"; Scaffold003 rebuild transcript 1075647 1077942 . - . gene_id "RvY_06800"; transcript_id "RvY_06800.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1075647 1075690 . - . gene_id "RvY_06800"; transcript_id "RvY_06800.1"; Scaffold003 rebuild exon 1077783 1077942 . - . gene_id "RvY_06800"; transcript_id "RvY_06800.1"; Scaffold003 rebuild transcript 1078375 1079151 . - . gene_id "RvY_06801"; transcript_id "RvY_06801.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1078375 1079151 . - . gene_id "RvY_06801"; transcript_id "RvY_06801.1"; Scaffold003 rebuild transcript 1080745 1085709 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; annotation "hypothetical protein."; Pfam "[Mad3_BUB1_I] Mad3/BUB1 homology region 1"; Scaffold003 rebuild exon 1080745 1081065 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1081439 1081801 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1082061 1082337 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1082395 1082678 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1082980 1083785 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1084051 1084207 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1084288 1084607 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1084739 1085075 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild exon 1085374 1085709 . - . gene_id "RvY_06802"; transcript_id "RvY_06802.1"; Scaffold003 rebuild transcript 1086991 1088623 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; gene_name "gmd"; annotation "GDP-mannose 4,6 dehydratase"; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain"; CDD "GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116)."; EC "EC4.2.1.47"; KO "K01711"; similar_genes "GMDS_DROME(e-value:1.2e-147;bit-score:520.0)"; Scaffold003 rebuild exon 1086991 1087077 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; Scaffold003 rebuild exon 1087266 1087398 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; Scaffold003 rebuild exon 1087482 1087591 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; Scaffold003 rebuild exon 1087737 1088034 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; Scaffold003 rebuild exon 1088090 1088336 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; Scaffold003 rebuild exon 1088395 1088623 . + . gene_id "RvY_06803"; transcript_id "RvY_06803.1"; Scaffold003 rebuild transcript 1094171 1096210 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1094171 1094275 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1094346 1094427 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1094490 1094511 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1094613 1094711 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1094781 1094971 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1095476 1095572 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1095671 1095755 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild exon 1095860 1096210 . + . gene_id "RvY_06804"; transcript_id "RvY_06804.1"; Scaffold003 rebuild transcript 1099089 1101547 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1099089 1099262 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1099337 1099463 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1099525 1099696 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1099774 1099891 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1099962 1100082 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1100151 1100221 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1100300 1100528 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1100602 1100914 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1101015 1101116 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1101186 1101431 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild exon 1101505 1101547 . - . gene_id "RvY_06805"; transcript_id "RvY_06805.1"; Scaffold003 rebuild transcript 1100734 1101365 . + . gene_id "RvY_06806"; transcript_id "RvY_06806.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1100734 1100885 . + . gene_id "RvY_06806"; transcript_id "RvY_06806.1"; Scaffold003 rebuild exon 1101209 1101365 . + . gene_id "RvY_06806"; transcript_id "RvY_06806.1"; Scaffold003 rebuild transcript 1102185 1102700 . - . gene_id "RvY_06807"; transcript_id "RvY_06807.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1102185 1102255 . - . gene_id "RvY_06807"; transcript_id "RvY_06807.1"; Scaffold003 rebuild exon 1102634 1102700 . - . gene_id "RvY_06807"; transcript_id "RvY_06807.1"; Scaffold003 rebuild transcript 1106311 1110005 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; gene_name "euk_LANCL"; annotation "hypothetical protein."; Pfam "[LANC_like] Lanthionine synthetase C-like protein"; CDD "eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs."; similar_genes "LANC2_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 1106311 1106346 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; Scaffold003 rebuild exon 1106499 1106756 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; Scaffold003 rebuild exon 1109150 1109318 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; Scaffold003 rebuild exon 1109370 1109570 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; Scaffold003 rebuild exon 1109661 1109771 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; Scaffold003 rebuild exon 1109839 1110005 . + . gene_id "RvY_06808"; transcript_id "RvY_06808.1"; Scaffold003 rebuild transcript 1110233 1111707 . - . gene_id "RvY_06809"; transcript_id "RvY_06809.1"; gene_name "SERPIN"; annotation "hypothetical protein."; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia."; KO "K13963"; Scaffold003 rebuild exon 1110233 1110408 . - . gene_id "RvY_06809"; transcript_id "RvY_06809.1"; Scaffold003 rebuild exon 1110505 1111515 . - . gene_id "RvY_06809"; transcript_id "RvY_06809.1"; Scaffold003 rebuild exon 1111626 1111707 . - . gene_id "RvY_06809"; transcript_id "RvY_06809.1"; Scaffold003 rebuild transcript 1112136 1113458 . - . gene_id "RvY_06810"; transcript_id "RvY_06810.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold003 rebuild exon 1112136 1112658 . - . gene_id "RvY_06810"; transcript_id "RvY_06810.1"; Scaffold003 rebuild exon 1112680 1112875 . - . gene_id "RvY_06810"; transcript_id "RvY_06810.1"; Scaffold003 rebuild exon 1112947 1113269 . - . gene_id "RvY_06810"; transcript_id "RvY_06810.1"; Scaffold003 rebuild exon 1113364 1113458 . - . gene_id "RvY_06810"; transcript_id "RvY_06810.1"; Scaffold003 rebuild transcript 1114519 1114774 . + . gene_id "RvY_06811"; transcript_id "RvY_06811.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1114519 1114587 . + . gene_id "RvY_06811"; transcript_id "RvY_06811.1"; Scaffold003 rebuild exon 1114640 1114774 . + . gene_id "RvY_06811"; transcript_id "RvY_06811.1"; Scaffold003 rebuild transcript 1115004 1115691 . + . gene_id "RvY_06812"; transcript_id "RvY_06812.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1115004 1115396 . + . gene_id "RvY_06812"; transcript_id "RvY_06812.1"; Scaffold003 rebuild exon 1115524 1115691 . + . gene_id "RvY_06812"; transcript_id "RvY_06812.1"; Scaffold003 rebuild transcript 1115856 1116704 . + . gene_id "RvY_06813"; transcript_id "RvY_06813.1"; gene_name "PRK13808"; annotation "hypothetical protein."; CDD "adenylate kinase; Provisional"; Scaffold003 rebuild exon 1115856 1116110 . + . gene_id "RvY_06813"; transcript_id "RvY_06813.1"; Scaffold003 rebuild exon 1116129 1116704 . + . gene_id "RvY_06813"; transcript_id "RvY_06813.1"; Scaffold003 rebuild transcript 1117474 1117773 . - . gene_id "RvY_06814"; transcript_id "RvY_06814.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1117474 1117773 . - . gene_id "RvY_06814"; transcript_id "RvY_06814.1"; Scaffold003 rebuild transcript 1119159 1120962 . + . gene_id "RvY_06815"; transcript_id "RvY_06815.2"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Glyco_hydro_16] Glycosyl hydrolases family 16"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "PGFRA_DANRE(e-value:9.2e-14;bit-score:75.0)"; Scaffold003 rebuild exon 1119159 1119765 . + . gene_id "RvY_06815"; transcript_id "RvY_06815.2"; Scaffold003 rebuild exon 1119837 1120659 . + . gene_id "RvY_06815"; transcript_id "RvY_06815.2"; Scaffold003 rebuild exon 1120740 1120962 . + . gene_id "RvY_06815"; transcript_id "RvY_06815.2"; Scaffold003 rebuild transcript 1121825 1122367 . - . gene_id "RvY_06816"; transcript_id "RvY_06816.1"; annotation "hypothetical protein."; similar_genes "K2C1_HUMAN(e-value:7.0e-14;bit-score:75.0)"; Scaffold003 rebuild exon 1121825 1122367 . - . gene_id "RvY_06816"; transcript_id "RvY_06816.1"; Scaffold003 rebuild transcript 1123027 1124306 . - . gene_id "RvY_06817"; transcript_id "RvY_06817.1"; gene_name "K05607"; annotation "Methylglutaconyl-CoA hydratase, mitochondrial"; Pfam "[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "enoyl-CoA hydratase; Provisional"; EC "EC4.2.1.18"; KO "K05607"; similar_genes "AUHM_HUMAN(e-value:8.3e-53;bit-score:204.0)"; Scaffold003 rebuild exon 1123027 1123397 . - . gene_id "RvY_06817"; transcript_id "RvY_06817.1"; Scaffold003 rebuild exon 1123715 1124306 . - . gene_id "RvY_06817"; transcript_id "RvY_06817.1"; Scaffold003 rebuild transcript 1124790 1127605 . - . gene_id "RvY_06818"; transcript_id "RvY_06818.1"; annotation "hypothetical protein."; Pfam "[Sec10] Exocyst complex component Sec10"; Scaffold003 rebuild exon 1124790 1125391 . - . gene_id "RvY_06818"; transcript_id "RvY_06818.1"; Scaffold003 rebuild exon 1125517 1125838 . - . gene_id "RvY_06818"; transcript_id "RvY_06818.1"; Scaffold003 rebuild exon 1126049 1127068 . - . gene_id "RvY_06818"; transcript_id "RvY_06818.1"; Scaffold003 rebuild exon 1127219 1127605 . - . gene_id "RvY_06818"; transcript_id "RvY_06818.1"; Scaffold003 rebuild transcript 1129194 1129421 . + . gene_id "RvY_06819"; transcript_id "RvY_06819.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1129194 1129421 . + . gene_id "RvY_06819"; transcript_id "RvY_06819.1"; Scaffold003 rebuild transcript 1130713 1133825 . - . gene_id "RvY_06820"; transcript_id "RvY_06820.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Glyco_hydro_16] Glycosyl hydrolases family 16"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "PGFRA_DANRE(e-value:7.0e-14;bit-score:75.0)"; Scaffold003 rebuild exon 1130713 1130959 . - . gene_id "RvY_06820"; transcript_id "RvY_06820.1"; Scaffold003 rebuild exon 1131020 1131842 . - . gene_id "RvY_06820"; transcript_id "RvY_06820.1"; Scaffold003 rebuild exon 1132052 1133825 . - . gene_id "RvY_06820"; transcript_id "RvY_06820.1"; Scaffold003 rebuild transcript 1134833 1135299 . - . gene_id "RvY_06821"; transcript_id "RvY_06821.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1134833 1134923 . - . gene_id "RvY_06821"; transcript_id "RvY_06821.1"; Scaffold003 rebuild exon 1135063 1135208 . - . gene_id "RvY_06821"; transcript_id "RvY_06821.1"; Scaffold003 rebuild exon 1135297 1135299 . - . gene_id "RvY_06821"; transcript_id "RvY_06821.1"; Scaffold003 rebuild transcript 1136070 1136728 . - . gene_id "RvY_06822"; transcript_id "RvY_06822.1"; annotation "hypothetical protein."; Pfam "[zf-LITAF-like] LITAF-like zinc ribbon domain"; similar_genes "LITAF_RAT(e-value:1.3e-21;bit-score:101.0)"; Scaffold003 rebuild exon 1136070 1136148 . - . gene_id "RvY_06822"; transcript_id "RvY_06822.1"; Scaffold003 rebuild exon 1136245 1136370 . - . gene_id "RvY_06822"; transcript_id "RvY_06822.1"; Scaffold003 rebuild exon 1136436 1136637 . - . gene_id "RvY_06822"; transcript_id "RvY_06822.1"; Scaffold003 rebuild exon 1136716 1136728 . - . gene_id "RvY_06822"; transcript_id "RvY_06822.1"; Scaffold003 rebuild transcript 1141984 1143062 . - . gene_id "RvY_06823"; transcript_id "RvY_06823.1"; gene_name "Tdh"; annotation "hypothetical protein."; Pfam "[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]"; Scaffold003 rebuild exon 1141984 1142532 . - . gene_id "RvY_06823"; transcript_id "RvY_06823.1"; Scaffold003 rebuild exon 1142571 1142748 . - . gene_id "RvY_06823"; transcript_id "RvY_06823.1"; Scaffold003 rebuild exon 1142983 1143062 . - . gene_id "RvY_06823"; transcript_id "RvY_06823.1"; Scaffold003 rebuild transcript 1144411 1146349 . + . gene_id "RvY_06824"; transcript_id "RvY_06824.1"; gene_name "EED"; annotation "polycomb protein EED"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11462"; similar_genes "ESC_DROVI(e-value:1.5e-09;bit-score:61.0)"; Scaffold003 rebuild exon 1144411 1144471 . + . gene_id "RvY_06824"; transcript_id "RvY_06824.1"; Scaffold003 rebuild exon 1144537 1145021 . + . gene_id "RvY_06824"; transcript_id "RvY_06824.1"; Scaffold003 rebuild exon 1145292 1145561 . + . gene_id "RvY_06824"; transcript_id "RvY_06824.1"; Scaffold003 rebuild exon 1145712 1146041 . + . gene_id "RvY_06824"; transcript_id "RvY_06824.1"; Scaffold003 rebuild exon 1146098 1146349 . + . gene_id "RvY_06824"; transcript_id "RvY_06824.1"; Scaffold003 rebuild transcript 1147430 1147729 . + . gene_id "RvY_06825"; transcript_id "RvY_06825.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1147430 1147729 . + . gene_id "RvY_06825"; transcript_id "RvY_06825.1"; Scaffold003 rebuild transcript 1149334 1150516 . + . gene_id "RvY_06826"; transcript_id "RvY_06826.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1149334 1149742 . + . gene_id "RvY_06826"; transcript_id "RvY_06826.1"; Scaffold003 rebuild exon 1149927 1150516 . + . gene_id "RvY_06826"; transcript_id "RvY_06826.1"; Scaffold003 rebuild transcript 1151710 1152351 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1151710 1151906 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.1"; Scaffold003 rebuild exon 1152072 1152351 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.1"; Scaffold003 rebuild transcript 1151143 1151662 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1151143 1151368 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.2"; Scaffold003 rebuild exon 1151430 1151662 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.2"; Scaffold003 rebuild transcript 1151482 1152140 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1151482 1151649 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.3"; Scaffold003 rebuild exon 1151754 1151906 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.3"; Scaffold003 rebuild exon 1152072 1152140 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.3"; Scaffold003 rebuild transcript 1152061 1152351 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1152061 1152351 . - . gene_id "RvY_06827"; transcript_id "RvY_06827.4"; Scaffold003 rebuild transcript 1154413 1157554 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; annotation "hypothetical protein."; Pfam "[TPR_1] Tetratricopeptide repeat|[DUF3808]"; Scaffold003 rebuild exon 1154413 1154581 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1154639 1154755 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1154816 1155060 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1155241 1155358 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1155424 1155500 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1155562 1155661 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1155734 1155944 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1156007 1156046 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1156109 1156343 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1156432 1156564 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1156629 1156725 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1156809 1156884 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1157184 1157291 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild exon 1157364 1157554 . - . gene_id "RvY_06828"; transcript_id "RvY_06828.1"; Scaffold003 rebuild transcript 1162867 1163598 . + . gene_id "RvY_06829"; transcript_id "RvY_06829.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1162867 1163598 . + . gene_id "RvY_06829"; transcript_id "RvY_06829.1"; Scaffold003 rebuild transcript 1163916 1164194 . - . gene_id "RvY_06830"; transcript_id "RvY_06830.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1163916 1164194 . - . gene_id "RvY_06830"; transcript_id "RvY_06830.1"; Scaffold003 rebuild transcript 1164848 1165523 . - . gene_id "RvY_06831"; transcript_id "RvY_06831.1"; gene_name "SERPIN"; annotation "hypothetical protein."; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors."; Scaffold003 rebuild exon 1164848 1165023 . - . gene_id "RvY_06831"; transcript_id "RvY_06831.1"; Scaffold003 rebuild exon 1165442 1165523 . - . gene_id "RvY_06831"; transcript_id "RvY_06831.1"; Scaffold003 rebuild transcript 1168261 1169387 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1168261 1168550 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.1"; Scaffold003 rebuild exon 1168631 1169183 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.1"; Scaffold003 rebuild exon 1169310 1169387 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.1"; Scaffold003 rebuild transcript 1168261 1169204 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1168261 1168550 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.2"; Scaffold003 rebuild exon 1168631 1169204 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.2"; Scaffold003 rebuild transcript 1168677 1169316 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1168677 1169200 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.3"; Scaffold003 rebuild exon 1169310 1169316 . + . gene_id "RvY_06832"; transcript_id "RvY_06832.3"; Scaffold003 rebuild transcript 1170401 1174892 . - . gene_id "RvY_06833"; transcript_id "RvY_06833.1"; gene_name "REM1"; annotation "Rad and Gem related GTP binding protein 1"; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD."; KO "K07847"; similar_genes "GEM_HUMAN(e-value:1.2e-11;bit-score:68.0)"; Scaffold003 rebuild exon 1170401 1170693 . - . gene_id "RvY_06833"; transcript_id "RvY_06833.1"; Scaffold003 rebuild exon 1170789 1170981 . - . gene_id "RvY_06833"; transcript_id "RvY_06833.1"; Scaffold003 rebuild exon 1172558 1172652 . - . gene_id "RvY_06833"; transcript_id "RvY_06833.1"; Scaffold003 rebuild exon 1174100 1174528 . - . gene_id "RvY_06833"; transcript_id "RvY_06833.1"; Scaffold003 rebuild exon 1174628 1174892 . - . gene_id "RvY_06833"; transcript_id "RvY_06833.1"; Scaffold003 rebuild transcript 1177818 1178006 . + . gene_id "RvY_06834"; transcript_id "RvY_06834.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1177818 1178006 . + . gene_id "RvY_06834"; transcript_id "RvY_06834.1"; Scaffold003 rebuild transcript 1181273 1182367 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1181273 1181767 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.1"; Scaffold003 rebuild exon 1181843 1182001 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.1"; Scaffold003 rebuild exon 1182131 1182367 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.1"; Scaffold003 rebuild transcript 1181273 1182334 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1181273 1181767 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.2"; Scaffold003 rebuild exon 1181843 1182004 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.2"; Scaffold003 rebuild exon 1182131 1182334 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.2"; Scaffold003 rebuild transcript 1181273 1182250 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1181273 1181767 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.3"; Scaffold003 rebuild exon 1181843 1182004 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.3"; Scaffold003 rebuild exon 1182131 1182250 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.3"; Scaffold003 rebuild transcript 1181273 1182250 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1181273 1181767 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.4"; Scaffold003 rebuild exon 1181843 1182001 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.4"; Scaffold003 rebuild exon 1182131 1182250 . - . gene_id "RvY_06835"; transcript_id "RvY_06835.4"; Scaffold003 rebuild transcript 1181927 1182247 . + . gene_id "RvY_06836"; transcript_id "RvY_06836.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1181927 1182247 . + . gene_id "RvY_06836"; transcript_id "RvY_06836.1"; Scaffold003 rebuild transcript 1183037 1185322 . + . gene_id "RvY_06837"; transcript_id "RvY_06837.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1183037 1183154 . + . gene_id "RvY_06837"; transcript_id "RvY_06837.1"; Scaffold003 rebuild exon 1183358 1183429 . + . gene_id "RvY_06837"; transcript_id "RvY_06837.1"; Scaffold003 rebuild exon 1183577 1183726 . + . gene_id "RvY_06837"; transcript_id "RvY_06837.1"; Scaffold003 rebuild exon 1184343 1184939 . + . gene_id "RvY_06837"; transcript_id "RvY_06837.1"; Scaffold003 rebuild exon 1185006 1185322 . + . gene_id "RvY_06837"; transcript_id "RvY_06837.1"; Scaffold003 rebuild transcript 1185840 1186016 . - . gene_id "RvY_06838"; transcript_id "RvY_06838.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1185840 1186016 . - . gene_id "RvY_06838"; transcript_id "RvY_06838.1"; Scaffold003 rebuild transcript 1186463 1187485 . - . gene_id "RvY_06839"; transcript_id "RvY_06839.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1186463 1187485 . - . gene_id "RvY_06839"; transcript_id "RvY_06839.1"; Scaffold003 rebuild transcript 1188268 1189763 . + . gene_id "RvY_06840"; transcript_id "RvY_06840.1"; gene_name "CCDC130"; annotation "Coiled-coil domain-containing protein 130 homolog"; Pfam "[DUF572] Family of unknown function (DUF572)"; KO "K13115"; similar_genes "CC130_DROME(e-value:2.2e-57;bit-score:220.0)"; Scaffold003 rebuild exon 1188268 1188270 . + . gene_id "RvY_06840"; transcript_id "RvY_06840.1"; Scaffold003 rebuild exon 1188328 1188461 . + . gene_id "RvY_06840"; transcript_id "RvY_06840.1"; Scaffold003 rebuild exon 1188645 1188819 . + . gene_id "RvY_06840"; transcript_id "RvY_06840.1"; Scaffold003 rebuild exon 1188963 1189220 . + . gene_id "RvY_06840"; transcript_id "RvY_06840.1"; Scaffold003 rebuild exon 1189296 1189763 . + . gene_id "RvY_06840"; transcript_id "RvY_06840.1"; Scaffold003 rebuild transcript 1190909 1191484 . + . gene_id "RvY_06841"; transcript_id "RvY_06841.1"; gene_name "DUF758"; annotation "hypothetical protein."; Pfam "[DUF758]"; CDD "Domain of unknown function (DUF758). Family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor."; Scaffold003 rebuild exon 1190909 1191484 . + . gene_id "RvY_06841"; transcript_id "RvY_06841.1"; Scaffold003 rebuild transcript 1191910 1193464 . - . gene_id "RvY_06842"; transcript_id "RvY_06842.1"; gene_name "KLK11"; annotation "kallikrein 11 [EC:3.4.21.-]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold003 rebuild exon 1191910 1191997 . - . gene_id "RvY_06842"; transcript_id "RvY_06842.1"; Scaffold003 rebuild exon 1192218 1192630 . - . gene_id "RvY_06842"; transcript_id "RvY_06842.1"; Scaffold003 rebuild exon 1192737 1192946 . - . gene_id "RvY_06842"; transcript_id "RvY_06842.1"; Scaffold003 rebuild exon 1193252 1193464 . - . gene_id "RvY_06842"; transcript_id "RvY_06842.1"; Scaffold003 rebuild transcript 1196272 1200209 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; annotation "hypothetical protein."; similar_genes "(1)CP062_DANRE(e-value:2.8e-19;bit-score:93.0)(2)CP062_DANRE(e-value:3.6e-13;bit-score:73.0)"; Scaffold003 rebuild exon 1196272 1196670 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild exon 1196729 1196992 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild exon 1197301 1197587 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild exon 1197834 1198331 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild exon 1198566 1198872 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild exon 1198954 1199568 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild exon 1199730 1200209 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.1"; Scaffold003 rebuild transcript 1197667 1200209 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.2"; annotation "hypothetical protein."; similar_genes "(1)CP062_DANRE(e-value:2.8e-19;bit-score:93.0)(2)CP062_DANRE(e-value:3.6e-13;bit-score:73.0)"; Scaffold003 rebuild exon 1197667 1197683 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.2"; Scaffold003 rebuild exon 1197834 1198331 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.2"; Scaffold003 rebuild exon 1198566 1198872 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.2"; Scaffold003 rebuild exon 1198954 1199568 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.2"; Scaffold003 rebuild exon 1199730 1200209 . - . gene_id "RvY_06843"; transcript_id "RvY_06843.2"; Scaffold003 rebuild transcript 1201359 1202623 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; gene_name "PSMA7"; annotation "Proteasome subunit alpha type-7"; Pfam "[Proteasome_A_N] Proteasome subunit A N-terminal signature|[Proteasome] Proteasome subunit"; CDD "proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02731"; similar_genes "PSA7_CARAU(e-value:2.6e-92;bit-score:336.0)"; Scaffold003 rebuild exon 1201359 1201466 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; Scaffold003 rebuild exon 1201536 1201662 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; Scaffold003 rebuild exon 1201721 1201845 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; Scaffold003 rebuild exon 1201942 1202064 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; Scaffold003 rebuild exon 1202240 1202422 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; Scaffold003 rebuild exon 1202519 1202623 . + . gene_id "RvY_06844"; transcript_id "RvY_06844.1"; Scaffold003 rebuild transcript 1203122 1203805 . - . gene_id "RvY_06845"; transcript_id "RvY_06845.1"; gene_name "NTF2"; annotation "hypothetical protein."; Pfam "[NTF2] Nuclear transport factor 2 (NTF2) domain"; CDD "Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins."; Scaffold003 rebuild exon 1203122 1203235 . - . gene_id "RvY_06845"; transcript_id "RvY_06845.1"; Scaffold003 rebuild exon 1203387 1203482 . - . gene_id "RvY_06845"; transcript_id "RvY_06845.1"; Scaffold003 rebuild exon 1203544 1203615 . - . gene_id "RvY_06845"; transcript_id "RvY_06845.1"; Scaffold003 rebuild exon 1203686 1203805 . - . gene_id "RvY_06845"; transcript_id "RvY_06845.1"; Scaffold003 rebuild transcript 1205318 1206298 . + . gene_id "RvY_06846"; transcript_id "RvY_06846.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1205318 1205451 . + . gene_id "RvY_06846"; transcript_id "RvY_06846.1"; Scaffold003 rebuild exon 1205520 1205687 . + . gene_id "RvY_06846"; transcript_id "RvY_06846.1"; Scaffold003 rebuild exon 1205711 1206117 . + . gene_id "RvY_06846"; transcript_id "RvY_06846.1"; Scaffold003 rebuild exon 1206147 1206298 . + . gene_id "RvY_06846"; transcript_id "RvY_06846.1"; Scaffold003 rebuild transcript 1208472 1209837 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 1208472 1208576 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; Scaffold003 rebuild exon 1208661 1208699 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; Scaffold003 rebuild exon 1208767 1208810 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; Scaffold003 rebuild exon 1208893 1209191 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; Scaffold003 rebuild exon 1209274 1209337 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; Scaffold003 rebuild exon 1209447 1209837 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.1"; Scaffold003 rebuild transcript 1208240 1209308 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 1208240 1208413 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; Scaffold003 rebuild exon 1208499 1208576 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; Scaffold003 rebuild exon 1208661 1208699 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; Scaffold003 rebuild exon 1208767 1208810 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; Scaffold003 rebuild exon 1208893 1209191 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; Scaffold003 rebuild exon 1209274 1209308 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.2"; Scaffold003 rebuild transcript 1208509 1209308 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.3"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 1208509 1208577 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.3"; Scaffold003 rebuild exon 1208661 1208699 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.3"; Scaffold003 rebuild exon 1208767 1208810 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.3"; Scaffold003 rebuild exon 1208893 1209191 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.3"; Scaffold003 rebuild exon 1209274 1209308 . - . gene_id "RvY_06847"; transcript_id "RvY_06847.3"; Scaffold003 rebuild transcript 1210467 1212867 . - . gene_id "RvY_06848"; transcript_id "RvY_06848.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold003 rebuild exon 1210467 1210501 . - . gene_id "RvY_06848"; transcript_id "RvY_06848.1"; Scaffold003 rebuild exon 1212342 1212646 . - . gene_id "RvY_06848"; transcript_id "RvY_06848.1"; Scaffold003 rebuild exon 1212854 1212867 . - . gene_id "RvY_06848"; transcript_id "RvY_06848.1"; Scaffold003 rebuild transcript 1221254 1222797 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 1221254 1221293 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; Scaffold003 rebuild exon 1221356 1221390 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; Scaffold003 rebuild exon 1221540 1221656 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; Scaffold003 rebuild exon 1221743 1221786 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; Scaffold003 rebuild exon 1221884 1222182 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; Scaffold003 rebuild exon 1222385 1222797 . - . gene_id "RvY_06849"; transcript_id "RvY_06849.1"; Scaffold003 rebuild transcript 1224273 1225480 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 1224273 1224333 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.1"; Scaffold003 rebuild exon 1224420 1224537 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.1"; Scaffold003 rebuild exon 1224753 1225051 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.1"; Scaffold003 rebuild exon 1225113 1225480 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.1"; Scaffold003 rebuild transcript 1224416 1225480 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.2"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 1224416 1224537 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.2"; Scaffold003 rebuild exon 1224753 1225051 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.2"; Scaffold003 rebuild exon 1225113 1225480 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.2"; Scaffold003 rebuild transcript 1224673 1225480 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.3"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 1224673 1225051 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.3"; Scaffold003 rebuild exon 1225113 1225480 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.3"; Scaffold003 rebuild transcript 1224673 1225246 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.4"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 1224673 1225051 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.4"; Scaffold003 rebuild exon 1225113 1225246 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.4"; Scaffold003 rebuild transcript 1224673 1225175 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.5"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 1224673 1225051 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.5"; Scaffold003 rebuild exon 1225108 1225175 . - . gene_id "RvY_06850"; transcript_id "RvY_06850.5"; Scaffold003 rebuild transcript 1226852 1228344 . - . gene_id "RvY_06851"; transcript_id "RvY_06851.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 1226852 1226857 . - . gene_id "RvY_06851"; transcript_id "RvY_06851.1"; Scaffold003 rebuild exon 1226993 1227154 . - . gene_id "RvY_06851"; transcript_id "RvY_06851.1"; Scaffold003 rebuild exon 1227235 1227351 . - . gene_id "RvY_06851"; transcript_id "RvY_06851.1"; Scaffold003 rebuild exon 1227544 1227955 . - . gene_id "RvY_06851"; transcript_id "RvY_06851.1"; Scaffold003 rebuild exon 1228064 1228344 . - . gene_id "RvY_06851"; transcript_id "RvY_06851.1"; Scaffold003 rebuild transcript 1229727 1230106 . - . gene_id "RvY_06852"; transcript_id "RvY_06852.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1229727 1229920 . - . gene_id "RvY_06852"; transcript_id "RvY_06852.1"; Scaffold003 rebuild exon 1230007 1230106 . - . gene_id "RvY_06852"; transcript_id "RvY_06852.1"; Scaffold003 rebuild transcript 1230836 1231528 . - . gene_id "RvY_06853"; transcript_id "RvY_06853.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1230836 1231528 . - . gene_id "RvY_06853"; transcript_id "RvY_06853.1"; Scaffold003 rebuild transcript 1231754 1232908 . - . gene_id "RvY_06854"; transcript_id "RvY_06854.1"; annotation "putative Cyclic nucleotide-gated cation channel alpha-3"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; similar_genes "CNGA3_BOVIN(e-value:1.6e-30;bit-score:130.0)"; Scaffold003 rebuild exon 1231754 1232908 . - . gene_id "RvY_06854"; transcript_id "RvY_06854.1"; Scaffold003 rebuild transcript 1233613 1234481 . - . gene_id "RvY_06855"; transcript_id "RvY_06855.1"; annotation "hypothetical protein."; Pfam "[Ion_trans] Ion transport protein"; Scaffold003 rebuild exon 1233613 1233806 . - . gene_id "RvY_06855"; transcript_id "RvY_06855.1"; Scaffold003 rebuild exon 1233880 1234075 . - . gene_id "RvY_06855"; transcript_id "RvY_06855.1"; Scaffold003 rebuild exon 1234137 1234481 . - . gene_id "RvY_06855"; transcript_id "RvY_06855.1"; Scaffold003 rebuild transcript 1237471 1238040 . + . gene_id "RvY_06856"; transcript_id "RvY_06856.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1237471 1237603 . + . gene_id "RvY_06856"; transcript_id "RvY_06856.1"; Scaffold003 rebuild exon 1237679 1238040 . + . gene_id "RvY_06856"; transcript_id "RvY_06856.1"; Scaffold003 rebuild transcript 1237471 1238040 . + . gene_id "RvY_06856"; transcript_id "RvY_06856.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1237471 1237540 . + . gene_id "RvY_06856"; transcript_id "RvY_06856.2"; Scaffold003 rebuild exon 1237679 1238040 . + . gene_id "RvY_06856"; transcript_id "RvY_06856.2"; Scaffold003 rebuild transcript 1238817 1240182 . + . gene_id "RvY_06857"; transcript_id "RvY_06857.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1238817 1238947 . + . gene_id "RvY_06857"; transcript_id "RvY_06857.1"; Scaffold003 rebuild exon 1240134 1240182 . + . gene_id "RvY_06857"; transcript_id "RvY_06857.1"; Scaffold003 rebuild transcript 1240847 1242268 . + . gene_id "RvY_06858"; transcript_id "RvY_06858.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold003 rebuild exon 1240847 1241211 . + . gene_id "RvY_06858"; transcript_id "RvY_06858.1"; Scaffold003 rebuild exon 1241383 1241994 . + . gene_id "RvY_06858"; transcript_id "RvY_06858.1"; Scaffold003 rebuild exon 1242154 1242268 . + . gene_id "RvY_06858"; transcript_id "RvY_06858.1"; Scaffold003 rebuild transcript 1242895 1243772 . + . gene_id "RvY_06859"; transcript_id "RvY_06859.1"; gene_name "gcvH"; annotation "putative Glycine cleavage system H protein, mitochondrial"; Pfam "[GCV_H] Glycine cleavage H-protein"; CDD "glycine cleavage system protein H; Provisional"; KO "K02437"; similar_genes "GCSH_DROME(e-value:1.2e-30;bit-score:131.0)"; Scaffold003 rebuild exon 1242895 1243015 . + . gene_id "RvY_06859"; transcript_id "RvY_06859.1"; Scaffold003 rebuild exon 1243075 1243218 . + . gene_id "RvY_06859"; transcript_id "RvY_06859.1"; Scaffold003 rebuild exon 1243297 1243428 . + . gene_id "RvY_06859"; transcript_id "RvY_06859.1"; Scaffold003 rebuild exon 1243666 1243772 . + . gene_id "RvY_06859"; transcript_id "RvY_06859.1"; Scaffold003 rebuild transcript 1244412 1246526 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; gene_name "2A0308"; annotation "(1)putative B(0,+)-type amino acid transporter 1(2)hypothetical protein."; Pfam "(1)[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "L-type amino acid transporter."; KO "(1)K13868"; similar_genes "(1)BAT1_RABIT(e-value:2.4e-33;bit-score:140.0)(2)BAT1_RAT(e-value:9.7e-20;bit-score:95.0)"; Scaffold003 rebuild exon 1244412 1244664 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1244815 1245180 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1245244 1245369 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1245447 1245552 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1245621 1245665 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1245779 1245902 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1245972 1246075 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1246148 1246244 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1246309 1246406 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild exon 1246484 1246526 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.1"; Scaffold003 rebuild transcript 1245834 1246863 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; gene_name "2A0308"; annotation "(1)putative B(0,+)-type amino acid transporter 1(2)hypothetical protein."; Pfam "(1)[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "L-type amino acid transporter."; KO "(1)K13868"; similar_genes "(1)BAT1_RABIT(e-value:2.4e-33;bit-score:140.0)(2)BAT1_RAT(e-value:9.7e-20;bit-score:95.0)"; Scaffold003 rebuild exon 1245834 1245902 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; Scaffold003 rebuild exon 1245972 1246075 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; Scaffold003 rebuild exon 1246148 1246244 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; Scaffold003 rebuild exon 1246309 1246458 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; Scaffold003 rebuild exon 1246527 1246695 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; Scaffold003 rebuild exon 1246751 1246863 . + . gene_id "RvY_06860"; transcript_id "RvY_06860.2"; Scaffold003 rebuild transcript 1247367 1248472 . + . gene_id "RvY_06861"; transcript_id "RvY_06861.1"; gene_name "2A0308"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "L-type amino acid transporter."; similar_genes "LAT1_RAT(e-value:1.5e-20;bit-score:97.0)"; Scaffold003 rebuild exon 1247367 1247538 . + . gene_id "RvY_06861"; transcript_id "RvY_06861.1"; Scaffold003 rebuild exon 1247717 1248274 . + . gene_id "RvY_06861"; transcript_id "RvY_06861.1"; Scaffold003 rebuild exon 1248360 1248472 . + . gene_id "RvY_06861"; transcript_id "RvY_06861.1"; Scaffold003 rebuild transcript 1249989 1254488 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]|[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; EC "EC1.14.17.-"; similar_genes "MOXD2_MOUSE(e-value:2.7e-11;bit-score:67.0)"; Scaffold003 rebuild exon 1249989 1250056 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1250119 1250221 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1250325 1250505 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1250575 1250717 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1250784 1250968 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1251060 1251117 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1251334 1251407 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1251588 1251683 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1251746 1251845 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1252005 1252196 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1253418 1253504 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1253606 1253794 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1253878 1254045 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild exon 1254198 1254488 . - . gene_id "RvY_06862"; transcript_id "RvY_06862.1"; Scaffold003 rebuild transcript 1251768 1252241 . + . gene_id "RvY_06863"; transcript_id "RvY_06863.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1251768 1252241 . + . gene_id "RvY_06863"; transcript_id "RvY_06863.1"; Scaffold003 rebuild transcript 1256508 1256684 . + . gene_id "RvY_06864"; transcript_id "RvY_06864.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1256508 1256684 . + . gene_id "RvY_06864"; transcript_id "RvY_06864.1"; Scaffold003 rebuild transcript 1257049 1258210 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 1257049 1257446 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.1"; Scaffold003 rebuild exon 1257521 1257722 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.1"; Scaffold003 rebuild exon 1257885 1258034 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.1"; Scaffold003 rebuild exon 1258121 1258210 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.1"; Scaffold003 rebuild transcript 1258219 1260185 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.2"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 1258219 1258468 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.2"; Scaffold003 rebuild exon 1259680 1260185 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.2"; Scaffold003 framed transcript 1257049 1258285 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.3"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 framed exon 1257049 1257446 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.3"; Scaffold003 framed exon 1257521 1257722 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.3"; Scaffold003 framed exon 1257885 1258034 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.3"; Scaffold003 framed exon 1258121 1258285 . - . gene_id "RvY_06865"; transcript_id "RvY_06865.3"; Scaffold003 rebuild transcript 1264610 1267706 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]|[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; EC "EC1.14.17.-"; similar_genes "MOXD2_MOUSE(e-value:1.2e-13;bit-score:74.0)"; Scaffold003 rebuild exon 1264610 1264861 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1264938 1265121 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1265205 1265344 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1265424 1265465 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1265538 1265680 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1265779 1265836 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1265925 1265998 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1266068 1266163 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1266234 1266333 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1266433 1266624 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1266756 1266842 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1266923 1267114 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1267183 1267350 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild exon 1267413 1267706 . - . gene_id "RvY_06866"; transcript_id "RvY_06866.1"; Scaffold003 rebuild transcript 1270374 1270648 . + . gene_id "RvY_06867"; transcript_id "RvY_06867.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1270374 1270538 . + . gene_id "RvY_06867"; transcript_id "RvY_06867.1"; Scaffold003 rebuild exon 1270625 1270648 . + . gene_id "RvY_06867"; transcript_id "RvY_06867.1"; Scaffold003 rebuild transcript 1272236 1272556 . + . gene_id "RvY_06868"; transcript_id "RvY_06868.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1272236 1272556 . + . gene_id "RvY_06868"; transcript_id "RvY_06868.1"; Scaffold003 rebuild transcript 1273205 1276204 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]|[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; EC "EC1.14.17.-"; similar_genes "MOXD2_HUMAN(e-value:5.1e-08;bit-score:56.0)"; Scaffold003 rebuild exon 1273205 1273330 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1273402 1273585 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1273658 1273797 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1273996 1274180 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1274261 1274318 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1274401 1274474 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1274583 1274678 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1274758 1274857 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1274926 1275117 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1275203 1275289 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1275423 1275611 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1275693 1275860 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild exon 1275926 1276204 . - . gene_id "RvY_06869"; transcript_id "RvY_06869.1"; Scaffold003 rebuild transcript 1281322 1282832 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold003 rebuild exon 1281322 1281557 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild exon 1281628 1281814 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild exon 1281911 1282021 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild exon 1282143 1282194 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild exon 1282313 1282390 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild exon 1282483 1282697 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild exon 1282767 1282832 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.1"; Scaffold003 rebuild transcript 1281491 1282485 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.2"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold003 rebuild exon 1281491 1282021 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.2"; Scaffold003 rebuild exon 1282143 1282194 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.2"; Scaffold003 rebuild exon 1282313 1282485 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.2"; Scaffold003 rebuild transcript 1281322 1282171 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.3"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold003 rebuild exon 1281322 1281557 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.3"; Scaffold003 rebuild exon 1281628 1281814 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.3"; Scaffold003 rebuild exon 1281911 1282171 . + . gene_id "RvY_06870"; transcript_id "RvY_06870.3"; Scaffold003 rebuild transcript 1283780 1284890 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.1"; gene_name "PH"; annotation "hypothetical protein."; Pfam "[PH]"; CDD "Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids."; Scaffold003 rebuild exon 1283780 1283946 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.1"; Scaffold003 rebuild exon 1284159 1284333 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.1"; Scaffold003 rebuild exon 1284401 1284556 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.1"; Scaffold003 rebuild exon 1284619 1284767 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.1"; Scaffold003 rebuild exon 1284848 1284890 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.1"; Scaffold003 rebuild transcript 1284145 1284890 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.2"; gene_name "PH"; annotation "hypothetical protein."; Pfam "[PH]"; CDD "Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids."; Scaffold003 rebuild exon 1284145 1284333 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.2"; Scaffold003 rebuild exon 1284401 1284556 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.2"; Scaffold003 rebuild exon 1284619 1284767 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.2"; Scaffold003 rebuild exon 1284848 1284890 . - . gene_id "RvY_06871"; transcript_id "RvY_06871.2"; Scaffold003 rebuild transcript 1285408 1287413 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; annotation "hypothetical protein."; Pfam "[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; Scaffold003 rebuild exon 1285408 1285445 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1285526 1285642 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1285751 1286034 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1286111 1286310 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1286382 1286608 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1286706 1286816 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1286979 1287079 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild exon 1287178 1287413 . + . gene_id "RvY_06872"; transcript_id "RvY_06872.1"; Scaffold003 rebuild transcript 1288434 1289729 . + . gene_id "RvY_06873"; transcript_id "RvY_06873.1"; gene_name "AQP4"; annotation "aquaporin-4"; Pfam "[MIP] Major intrinsic protein"; CDD "Major intrinsic protein. MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators."; KO "K09866"; similar_genes "AQP_ANOGA(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 1288434 1289012 . + . gene_id "RvY_06873"; transcript_id "RvY_06873.1"; Scaffold003 rebuild exon 1289262 1289348 . + . gene_id "RvY_06873"; transcript_id "RvY_06873.1"; Scaffold003 rebuild exon 1289464 1289619 . + . gene_id "RvY_06873"; transcript_id "RvY_06873.1"; Scaffold003 rebuild exon 1289715 1289729 . + . gene_id "RvY_06873"; transcript_id "RvY_06873.1"; Scaffold003 rebuild transcript 1289777 1290097 . + . gene_id "RvY_06874"; transcript_id "RvY_06874.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1289777 1290097 . + . gene_id "RvY_06874"; transcript_id "RvY_06874.1"; Scaffold003 rebuild transcript 1290241 1292837 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; gene_name "K01046"; annotation "triacylglycerol lipase [EC:3.1.1.3]"; Pfam "[Lipase]|[Abhydrolase_6] Alpha/beta hydrolase family"; CDD "Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold003 rebuild exon 1290241 1290502 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1290580 1290647 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1290758 1290819 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1290881 1291019 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1291087 1291253 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1291343 1291401 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1291465 1291516 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1291619 1291685 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1291759 1292051 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1292121 1292178 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1292263 1292461 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1292528 1292597 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild exon 1292681 1292837 . - . gene_id "RvY_06875"; transcript_id "RvY_06875.1"; Scaffold003 rebuild transcript 1294152 1297076 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; gene_name "PRK08853"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold003 rebuild exon 1294152 1294296 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1294368 1294501 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1294576 1294728 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1294816 1294918 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1295010 1295149 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1295369 1295579 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1295821 1296017 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild exon 1296156 1297076 . + . gene_id "RvY_06876"; transcript_id "RvY_06876.1"; Scaffold003 rebuild transcript 1297179 1297807 . - . gene_id "RvY_06877"; transcript_id "RvY_06877.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1297179 1297373 . - . gene_id "RvY_06877"; transcript_id "RvY_06877.1"; Scaffold003 rebuild exon 1297504 1297655 . - . gene_id "RvY_06877"; transcript_id "RvY_06877.1"; Scaffold003 rebuild exon 1297735 1297807 . - . gene_id "RvY_06877"; transcript_id "RvY_06877.1"; Scaffold003 rebuild transcript 1299245 1301417 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 1299245 1299341 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.1"; Scaffold003 rebuild exon 1299429 1299479 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.1"; Scaffold003 rebuild exon 1299555 1299624 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.1"; Scaffold003 rebuild exon 1300763 1301417 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.1"; Scaffold003 rebuild transcript 1300866 1301417 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 1300866 1301417 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.2"; Scaffold003 rebuild transcript 1300977 1301417 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 1300977 1301417 . + . gene_id "RvY_06878"; transcript_id "RvY_06878.3"; Scaffold003 rebuild transcript 1299322 1299783 . - . gene_id "RvY_06879"; transcript_id "RvY_06879.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1299322 1299783 . - . gene_id "RvY_06879"; transcript_id "RvY_06879.1"; Scaffold003 rebuild transcript 1301798 1302255 . - . gene_id "RvY_06880"; transcript_id "RvY_06880.1"; gene_name "(1)PTZ00141"; annotation "(1)putative Elongation factor 1-alpha 1(2)hypothetical protein."; Pfam "[GTP_EFTU_D3] Elongation factor Tu C-terminal domain"; CDD "(1)elongation factor 1 alpha; Provisional"; similar_genes "(1)EF1A1_DROME(e-value:3.3e-37;bit-score:153.0)"; Scaffold003 rebuild exon 1301798 1302015 . - . gene_id "RvY_06880"; transcript_id "RvY_06880.1"; Scaffold003 rebuild exon 1302081 1302255 . - . gene_id "RvY_06880"; transcript_id "RvY_06880.1"; Scaffold003 rebuild transcript 1301547 1301900 . - . gene_id "RvY_06880"; transcript_id "RvY_06880.2"; gene_name "(1)PTZ00141"; annotation "(1)putative Elongation factor 1-alpha 1(2)hypothetical protein."; Pfam "[GTP_EFTU_D3] Elongation factor Tu C-terminal domain"; CDD "(1)elongation factor 1 alpha; Provisional"; similar_genes "(1)EF1A1_DROME(e-value:3.3e-37;bit-score:153.0)"; Scaffold003 rebuild exon 1301547 1301900 . - . gene_id "RvY_06880"; transcript_id "RvY_06880.2"; Scaffold003 rebuild transcript 1302614 1303376 . - . gene_id "RvY_06881"; transcript_id "RvY_06881.1"; gene_name "PTZ00141"; annotation "hypothetical protein."; Pfam "[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "elongation factor 1 alpha; Provisional"; similar_genes "EF1A_ONCVO(e-value:9.7e-20;bit-score:95.0)"; Scaffold003 rebuild exon 1302614 1302825 . - . gene_id "RvY_06881"; transcript_id "RvY_06881.1"; Scaffold003 rebuild exon 1303190 1303376 . - . gene_id "RvY_06881"; transcript_id "RvY_06881.1"; Scaffold003 rebuild transcript 1307326 1308413 . + . gene_id "RvY_06882"; transcript_id "RvY_06882.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1307326 1307417 . + . gene_id "RvY_06882"; transcript_id "RvY_06882.1"; Scaffold003 rebuild exon 1307474 1308413 . + . gene_id "RvY_06882"; transcript_id "RvY_06882.1"; Scaffold003 rebuild transcript 1307886 1308446 . + . gene_id "RvY_06882"; transcript_id "RvY_06882.2"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1307886 1308446 . + . gene_id "RvY_06882"; transcript_id "RvY_06882.2"; Scaffold003 rebuild transcript 1310232 1310573 . + . gene_id "RvY_06883"; transcript_id "RvY_06883.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1310232 1310573 . + . gene_id "RvY_06883"; transcript_id "RvY_06883.1"; Scaffold003 rebuild transcript 1312015 1312272 . - . gene_id "RvY_06884"; transcript_id "RvY_06884.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1312015 1312272 . - . gene_id "RvY_06884"; transcript_id "RvY_06884.1"; Scaffold003 rebuild transcript 1314383 1314670 . + . gene_id "RvY_06885"; transcript_id "RvY_06885.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1314383 1314670 . + . gene_id "RvY_06885"; transcript_id "RvY_06885.1"; Scaffold003 rebuild transcript 1317876 1320133 . + . gene_id "RvY_06886"; transcript_id "RvY_06886.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 1317876 1318026 . + . gene_id "RvY_06886"; transcript_id "RvY_06886.1"; Scaffold003 rebuild exon 1318143 1318193 . + . gene_id "RvY_06886"; transcript_id "RvY_06886.1"; Scaffold003 rebuild exon 1318421 1318490 . + . gene_id "RvY_06886"; transcript_id "RvY_06886.1"; Scaffold003 rebuild exon 1319380 1320133 . + . gene_id "RvY_06886"; transcript_id "RvY_06886.1"; Scaffold003 rebuild transcript 1320496 1321041 . + . gene_id "RvY_06887"; transcript_id "RvY_06887.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1320496 1321041 . + . gene_id "RvY_06887"; transcript_id "RvY_06887.1"; Scaffold003 rebuild transcript 1321458 1322226 . - . gene_id "RvY_06888"; transcript_id "RvY_06888.1"; gene_name "PRK12678"; annotation "hypothetical protein."; CDD "transcription termination factor Rho; Provisional"; Scaffold003 rebuild exon 1321458 1321813 . - . gene_id "RvY_06888"; transcript_id "RvY_06888.1"; Scaffold003 rebuild exon 1321893 1322226 . - . gene_id "RvY_06888"; transcript_id "RvY_06888.1"; Scaffold003 rebuild transcript 1326159 1327448 . + . gene_id "RvY_06889"; transcript_id "RvY_06889.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1326159 1326198 . + . gene_id "RvY_06889"; transcript_id "RvY_06889.1"; Scaffold003 rebuild exon 1326314 1326781 . + . gene_id "RvY_06889"; transcript_id "RvY_06889.1"; Scaffold003 rebuild exon 1326988 1327146 . + . gene_id "RvY_06889"; transcript_id "RvY_06889.1"; Scaffold003 rebuild exon 1327255 1327448 . + . gene_id "RvY_06889"; transcript_id "RvY_06889.1"; Scaffold003 rebuild transcript 1327591 1332215 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.1"; annotation "putative Polyphosphoinositide phosphatase"; Pfam "[Syja_N] SacI homology domain"; EC "EC3.1.3.-"; similar_genes "FIG4_MOUSE(e-value:1.3e-27;bit-score:121.0)"; Scaffold003 rebuild exon 1327591 1328261 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.1"; Scaffold003 rebuild exon 1328327 1328613 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.1"; Scaffold003 rebuild exon 1330177 1331065 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.1"; Scaffold003 rebuild exon 1331234 1332215 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.1"; Scaffold003 rebuild transcript 1327591 1332215 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.2"; annotation "putative Polyphosphoinositide phosphatase"; Pfam "[Syja_N] SacI homology domain"; EC "EC3.1.3.-"; similar_genes "FIG4_MOUSE(e-value:1.3e-27;bit-score:121.0)"; Scaffold003 rebuild exon 1327591 1328261 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.2"; Scaffold003 rebuild exon 1328327 1328613 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.2"; Scaffold003 rebuild exon 1330177 1331065 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.2"; Scaffold003 rebuild exon 1331234 1331725 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.2"; Scaffold003 rebuild exon 1331897 1332215 . - . gene_id "RvY_06890"; transcript_id "RvY_06890.2"; Scaffold003 rebuild transcript 1333557 1349915 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; similar_genes "PKHG4_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold003 rebuild exon 1333557 1333787 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1338091 1338345 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1343845 1344457 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1344903 1345106 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1345231 1345345 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1345454 1345577 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1345640 1345750 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1345913 1346029 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1346309 1346884 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1347183 1348232 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1348318 1348491 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1348569 1348802 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1348870 1349121 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1349216 1349393 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild exon 1349506 1349915 . + . gene_id "RvY_06891"; transcript_id "RvY_06891.1"; Scaffold003 rebuild transcript 1351186 1353020 . - . gene_id "RvY_06892"; transcript_id "RvY_06892.1"; gene_name "Acyltransferase"; annotation "Glycerol-3-phosphate acyltransferase 3-like"; Pfam "[Acyltransferase]"; CDD "Acyltransferase. This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene."; EC "EC2.3.1.15"; KO "K13506"; similar_genes "GPT3L_DANRE(e-value:1.9e-88;bit-score:323.0)"; Scaffold003 rebuild exon 1351186 1351431 . - . gene_id "RvY_06892"; transcript_id "RvY_06892.1"; Scaffold003 rebuild exon 1351581 1352320 . - . gene_id "RvY_06892"; transcript_id "RvY_06892.1"; Scaffold003 rebuild exon 1352627 1353020 . - . gene_id "RvY_06892"; transcript_id "RvY_06892.1"; Scaffold003 rebuild transcript 1353759 1358966 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; gene_name "ELP1"; annotation "elongator complex protein 1"; Pfam "[IKI3] IKI3 family"; KO "K11373"; similar_genes "ELP1_MOUSE(e-value:2.2e-23;bit-score:107.0)"; Scaffold003 rebuild exon 1353759 1353932 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1353993 1354535 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1354613 1354901 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1355110 1355519 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1355780 1356107 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1356320 1356975 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1357094 1357433 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1357634 1357971 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1358037 1358279 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1358368 1358625 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild exon 1358688 1358966 . - . gene_id "RvY_06893"; transcript_id "RvY_06893.1"; Scaffold003 rebuild transcript 1361462 1361614 . - . gene_id "RvY_06894"; transcript_id "RvY_06894.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1361462 1361614 . - . gene_id "RvY_06894"; transcript_id "RvY_06894.1"; Scaffold003 rebuild transcript 1370545 1371105 . - . gene_id "RvY_06895"; transcript_id "RvY_06895.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1370545 1371105 . - . gene_id "RvY_06895"; transcript_id "RvY_06895.1"; Scaffold003 rebuild transcript 1371623 1372362 . - . gene_id "RvY_06896"; transcript_id "RvY_06896.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1371623 1372100 . - . gene_id "RvY_06896"; transcript_id "RvY_06896.1"; Scaffold003 rebuild exon 1372114 1372177 . - . gene_id "RvY_06896"; transcript_id "RvY_06896.1"; Scaffold003 rebuild exon 1372245 1372362 . - . gene_id "RvY_06896"; transcript_id "RvY_06896.1"; Scaffold003 rebuild transcript 1374878 1375093 . + . gene_id "RvY_06897"; transcript_id "RvY_06897.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1374878 1375093 . + . gene_id "RvY_06897"; transcript_id "RvY_06897.1"; Scaffold003 rebuild transcript 1375843 1376208 . - . gene_id "RvY_06898"; transcript_id "RvY_06898.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1375843 1376208 . - . gene_id "RvY_06898"; transcript_id "RvY_06898.1"; Scaffold003 rebuild transcript 1377370 1377750 . - . gene_id "RvY_06899"; transcript_id "RvY_06899.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1377370 1377567 . - . gene_id "RvY_06899"; transcript_id "RvY_06899.1"; Scaffold003 rebuild exon 1377712 1377750 . - . gene_id "RvY_06899"; transcript_id "RvY_06899.1"; Scaffold003 rebuild transcript 1377799 1378436 . - . gene_id "RvY_06900"; transcript_id "RvY_06900.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1377799 1378009 . - . gene_id "RvY_06900"; transcript_id "RvY_06900.1"; Scaffold003 rebuild exon 1378339 1378436 . - . gene_id "RvY_06900"; transcript_id "RvY_06900.1"; Scaffold003 rebuild transcript 1380788 1381099 . + . gene_id "RvY_06901"; transcript_id "RvY_06901.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1380788 1381099 . + . gene_id "RvY_06901"; transcript_id "RvY_06901.1"; Scaffold003 rebuild transcript 1382249 1385048 . - . gene_id "RvY_06902"; transcript_id "RvY_06902.1"; annotation "hypothetical protein."; Pfam "[Sedlin_N] Sedlin, N-terminal conserved region|[Sybindin] Sybindin-like family"; Scaffold003 rebuild exon 1382249 1382288 . - . gene_id "RvY_06902"; transcript_id "RvY_06902.1"; Scaffold003 rebuild exon 1382395 1382474 . - . gene_id "RvY_06902"; transcript_id "RvY_06902.1"; Scaffold003 rebuild exon 1384602 1384689 . - . gene_id "RvY_06902"; transcript_id "RvY_06902.1"; Scaffold003 rebuild exon 1384751 1384947 . - . gene_id "RvY_06902"; transcript_id "RvY_06902.1"; Scaffold003 rebuild exon 1385016 1385048 . - . gene_id "RvY_06902"; transcript_id "RvY_06902.1"; Scaffold003 rebuild transcript 1386459 1386695 . + . gene_id "RvY_06903"; transcript_id "RvY_06903.1"; annotation "hypothetical protein."; Pfam "[Pcc1] Transcription factor Pcc1"; Scaffold003 rebuild exon 1386459 1386490 . + . gene_id "RvY_06903"; transcript_id "RvY_06903.1"; Scaffold003 rebuild exon 1386563 1386695 . + . gene_id "RvY_06903"; transcript_id "RvY_06903.1"; Scaffold003 rebuild transcript 1386908 1389084 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; annotation "hypothetical protein."; Pfam "[DUF2392]"; KO "(2)K14169"; Scaffold003 rebuild exon 1386908 1387183 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild exon 1387274 1387325 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild exon 1387393 1387508 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild exon 1387720 1388125 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild exon 1388191 1388549 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild exon 1388636 1388899 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild exon 1388974 1389084 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.1"; Scaffold003 rebuild transcript 1386908 1389084 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; annotation "hypothetical protein."; Pfam "[DUF2392]"; KO "(2)K14169"; Scaffold003 rebuild exon 1386908 1387183 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild exon 1387274 1387325 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild exon 1387393 1387508 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild exon 1387720 1388125 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild exon 1388338 1388549 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild exon 1388636 1388899 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild exon 1388974 1389084 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.2"; Scaffold003 rebuild transcript 1386908 1388253 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.3"; annotation "hypothetical protein."; Pfam "[DUF2392]"; KO "(2)K14169"; Scaffold003 rebuild exon 1386908 1387183 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.3"; Scaffold003 rebuild exon 1387274 1387325 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.3"; Scaffold003 rebuild exon 1387393 1387508 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.3"; Scaffold003 rebuild exon 1387720 1388253 . + . gene_id "RvY_06904"; transcript_id "RvY_06904.3"; Scaffold003 rebuild transcript 1389364 1392060 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; similar_genes "CAB32_DROME(e-value:5.3e-12;bit-score:69.0)"; Scaffold003 rebuild exon 1389364 1389585 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1390114 1390209 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1390781 1390840 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1390923 1390992 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1391116 1391171 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1391305 1391388 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1391865 1391921 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild exon 1392055 1392060 . - . gene_id "RvY_06905"; transcript_id "RvY_06905.1"; Scaffold003 rebuild transcript 1395185 1398606 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; annotation "Transmembrane 9 superfamily member 4"; Pfam "[EMP70] Endomembrane protein 70"; similar_genes "TM9S4_BOVIN(e-value:3.1e-99;bit-score:359.0)"; Scaffold003 rebuild exon 1395185 1395313 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1395408 1395507 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1395702 1395885 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1395952 1396247 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1396354 1396580 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1396670 1396802 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1397109 1397350 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1397417 1397512 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1397592 1397754 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1397818 1397918 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1398287 1398448 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild exon 1398529 1398606 . + . gene_id "RvY_06906"; transcript_id "RvY_06906.1"; Scaffold003 rebuild transcript 1399123 1399598 . - . gene_id "RvY_06907"; transcript_id "RvY_06907.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1399123 1399207 . - . gene_id "RvY_06907"; transcript_id "RvY_06907.1"; Scaffold003 rebuild exon 1399278 1399448 . - . gene_id "RvY_06907"; transcript_id "RvY_06907.1"; Scaffold003 rebuild exon 1399537 1399598 . - . gene_id "RvY_06907"; transcript_id "RvY_06907.1"; Scaffold003 rebuild transcript 1400038 1403186 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; gene_name "EIF2AK"; annotation "eukaryotic translation initiation factor 2-alpha kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08860"; similar_genes "E2AK1_MACFA(e-value:6.7e-08;bit-score:55.0)"; Scaffold003 rebuild exon 1400038 1400140 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1400227 1400367 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1400579 1400607 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1400842 1400949 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1401015 1401215 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1401281 1401455 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1401632 1402344 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1402435 1402525 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1402665 1402774 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild exon 1402851 1403186 . + . gene_id "RvY_06908"; transcript_id "RvY_06908.1"; Scaffold003 rebuild transcript 1404383 1404592 . + . gene_id "RvY_06909"; transcript_id "RvY_06909.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1404383 1404592 . + . gene_id "RvY_06909"; transcript_id "RvY_06909.1"; Scaffold003 rebuild transcript 1404752 1405408 . + . gene_id "RvY_06910"; transcript_id "RvY_06910.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1404752 1405408 . + . gene_id "RvY_06910"; transcript_id "RvY_06910.1"; Scaffold003 rebuild transcript 1405759 1412798 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "ANR12_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold003 rebuild exon 1405759 1405944 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1405998 1406084 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1406347 1406595 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1406956 1407072 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1407149 1407622 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1407842 1408963 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1409795 1410172 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1410355 1411077 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1411351 1411493 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1411559 1411777 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1411865 1412032 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1412109 1412271 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1412358 1412548 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild exon 1412630 1412798 . - . gene_id "RvY_06911"; transcript_id "RvY_06911.1"; Scaffold003 rebuild transcript 1414022 1415666 . + . gene_id "RvY_06912"; transcript_id "RvY_06912.1"; gene_name "PDHA"; annotation "Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial"; Pfam "[E1_dh] Dehydrogenase E1 component"; CDD "pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc."; EC "EC1.2.4.1"; KO "K00161"; similar_genes "ODPA_CAEEL(e-value:7.6e-145;bit-score:510.0)"; Scaffold003 rebuild exon 1414022 1414394 . + . gene_id "RvY_06912"; transcript_id "RvY_06912.1"; Scaffold003 rebuild exon 1414611 1415054 . + . gene_id "RvY_06912"; transcript_id "RvY_06912.1"; Scaffold003 rebuild exon 1415230 1415666 . + . gene_id "RvY_06912"; transcript_id "RvY_06912.1"; Scaffold003 rebuild transcript 1416122 1416439 . + . gene_id "RvY_06913"; transcript_id "RvY_06913.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1416122 1416439 . + . gene_id "RvY_06913"; transcript_id "RvY_06913.1"; Scaffold003 rebuild transcript 1417750 1418010 . - . gene_id "RvY_06914"; transcript_id "RvY_06914.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1417750 1418010 . - . gene_id "RvY_06914"; transcript_id "RvY_06914.1"; Scaffold003 rebuild transcript 1418637 1423213 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; gene_name "P-ATPase-V"; annotation "putative Probable cation-transporting ATPase 13A2"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in."; EC "EC3.6.3.-"; similar_genes "AT132_HUMAN(e-value:8.9e-44;bit-score:174.0)"; Scaffold003 rebuild exon 1418637 1419017 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1419555 1419643 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1419708 1420092 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1420168 1420230 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1420301 1420444 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1420708 1421066 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1421134 1421409 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1421524 1421962 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1422023 1422129 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1422191 1422246 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1422319 1422356 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1422418 1422563 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1422620 1422778 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1422860 1423134 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild exon 1423191 1423213 . - . gene_id "RvY_06915"; transcript_id "RvY_06915.1"; Scaffold003 rebuild transcript 1424813 1425941 . + . gene_id "RvY_06916"; transcript_id "RvY_06916.1"; annotation "hypothetical protein."; Pfam "[DUF2053] Predicted membrane protein (DUF2053)"; Scaffold003 rebuild exon 1424813 1424889 . + . gene_id "RvY_06916"; transcript_id "RvY_06916.1"; Scaffold003 rebuild exon 1424963 1425107 . + . gene_id "RvY_06916"; transcript_id "RvY_06916.1"; Scaffold003 rebuild exon 1425308 1425529 . + . gene_id "RvY_06916"; transcript_id "RvY_06916.1"; Scaffold003 rebuild exon 1425598 1425719 . + . gene_id "RvY_06916"; transcript_id "RvY_06916.1"; Scaffold003 rebuild exon 1425797 1425941 . + . gene_id "RvY_06916"; transcript_id "RvY_06916.1"; Scaffold003 rebuild transcript 1427910 1428161 . + . gene_id "RvY_06917"; transcript_id "RvY_06917.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1427910 1428161 . + . gene_id "RvY_06917"; transcript_id "RvY_06917.1"; Scaffold003 rebuild transcript 1429515 1430804 . - . gene_id "RvY_06918"; transcript_id "RvY_06918.1"; gene_name "kgd"; annotation "hypothetical protein."; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; Scaffold003 rebuild exon 1429515 1429581 . - . gene_id "RvY_06918"; transcript_id "RvY_06918.1"; Scaffold003 rebuild exon 1429747 1430804 . - . gene_id "RvY_06918"; transcript_id "RvY_06918.1"; Scaffold003 rebuild transcript 1431917 1434716 . - . gene_id "RvY_06919"; transcript_id "RvY_06919.1"; gene_name "WD40"; annotation "Nucleolar protein 10"; Pfam "[NUC153]"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14788"; similar_genes "NOL10_XENLA(e-value:3.7e-70;bit-score:262.0)"; Scaffold003 rebuild exon 1431917 1432742 . - . gene_id "RvY_06919"; transcript_id "RvY_06919.1"; Scaffold003 rebuild exon 1433099 1433399 . - . gene_id "RvY_06919"; transcript_id "RvY_06919.1"; Scaffold003 rebuild exon 1433553 1434023 . - . gene_id "RvY_06919"; transcript_id "RvY_06919.1"; Scaffold003 rebuild exon 1434221 1434716 . - . gene_id "RvY_06919"; transcript_id "RvY_06919.1"; Scaffold003 rebuild transcript 1435217 1436343 . - . gene_id "RvY_06920"; transcript_id "RvY_06920.1"; annotation "hypothetical protein."; Pfam "[CIA30] Complex I intermediate-associated protein 30 (CIA30)"; similar_genes "CIA30_DROME(e-value:3.3e-22;bit-score:103.0)"; Scaffold003 rebuild exon 1435217 1435438 . - . gene_id "RvY_06920"; transcript_id "RvY_06920.1"; Scaffold003 rebuild exon 1435512 1435697 . - . gene_id "RvY_06920"; transcript_id "RvY_06920.1"; Scaffold003 rebuild exon 1435822 1436343 . - . gene_id "RvY_06920"; transcript_id "RvY_06920.1"; Scaffold003 rebuild transcript 1437369 1437578 . - . gene_id "RvY_06921"; transcript_id "RvY_06921.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1437369 1437578 . - . gene_id "RvY_06921"; transcript_id "RvY_06921.1"; Scaffold003 rebuild transcript 1437672 1440451 . + . gene_id "RvY_06922"; transcript_id "RvY_06922.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1437672 1437773 . + . gene_id "RvY_06922"; transcript_id "RvY_06922.1"; Scaffold003 rebuild exon 1440179 1440451 . + . gene_id "RvY_06922"; transcript_id "RvY_06922.1"; Scaffold003 rebuild transcript 1440488 1440961 . + . gene_id "RvY_06923"; transcript_id "RvY_06923.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1440488 1440715 . + . gene_id "RvY_06923"; transcript_id "RvY_06923.1"; Scaffold003 rebuild exon 1440821 1440961 . + . gene_id "RvY_06923"; transcript_id "RvY_06923.1"; Scaffold003 rebuild transcript 1441064 1442375 . + . gene_id "RvY_06924"; transcript_id "RvY_06924.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1441064 1441186 . + . gene_id "RvY_06924"; transcript_id "RvY_06924.1"; Scaffold003 rebuild exon 1441382 1441831 . + . gene_id "RvY_06924"; transcript_id "RvY_06924.1"; Scaffold003 rebuild exon 1441920 1442146 . + . gene_id "RvY_06924"; transcript_id "RvY_06924.1"; Scaffold003 rebuild exon 1442222 1442375 . + . gene_id "RvY_06924"; transcript_id "RvY_06924.1"; Scaffold003 rebuild transcript 1444378 1446086 . + . gene_id "RvY_06925"; transcript_id "RvY_06925.1"; gene_name "PCYT2"; annotation "Ethanolamine-phosphate cytidylyltransferase"; Pfam "[CTP_transf_2] Cytidylyltransferase"; CDD "ethanolamine-phosphate cytidylytransferase; Provisional"; EC "EC2.7.7.14"; KO "K00967"; similar_genes "PCY2_HUMAN(e-value:1.2e-62;bit-score:237.0)"; Scaffold003 rebuild exon 1444378 1444469 . + . gene_id "RvY_06925"; transcript_id "RvY_06925.1"; Scaffold003 rebuild exon 1444535 1444953 . + . gene_id "RvY_06925"; transcript_id "RvY_06925.1"; Scaffold003 rebuild exon 1445168 1445383 . + . gene_id "RvY_06925"; transcript_id "RvY_06925.1"; Scaffold003 rebuild exon 1445608 1446086 . + . gene_id "RvY_06925"; transcript_id "RvY_06925.1"; Scaffold003 rebuild transcript 1446931 1448751 . - . gene_id "RvY_06926"; transcript_id "RvY_06926.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1446931 1447123 . - . gene_id "RvY_06926"; transcript_id "RvY_06926.1"; Scaffold003 rebuild exon 1447207 1447454 . - . gene_id "RvY_06926"; transcript_id "RvY_06926.1"; Scaffold003 rebuild exon 1447506 1447569 . - . gene_id "RvY_06926"; transcript_id "RvY_06926.1"; Scaffold003 rebuild exon 1447898 1448048 . - . gene_id "RvY_06926"; transcript_id "RvY_06926.1"; Scaffold003 rebuild exon 1448112 1448751 . - . gene_id "RvY_06926"; transcript_id "RvY_06926.1"; Scaffold003 rebuild transcript 1450280 1452121 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; gene_name "OST3"; annotation "putative Tumor suppressor candidate 3"; Pfam "[OST3_OST6] OST3 / OST6 family"; KO "K12669"; similar_genes "TUSC3_HUMAN(e-value:6.2e-32;bit-score:135.0)"; Scaffold003 rebuild exon 1450280 1450372 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1450566 1450741 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1450833 1450947 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1451029 1451111 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1451214 1451271 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1451384 1451524 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1451616 1451705 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1451769 1451832 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild exon 1451934 1452121 . + . gene_id "RvY_06927"; transcript_id "RvY_06927.1"; Scaffold003 rebuild transcript 1452607 1455372 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Activin_recp] Activin types I and II receptor domain|[TGF_beta_GS] Transforming growth factor beta type I GS-motif"; EC "EC2.7.11.30"; similar_genes "TGFR1_HUMAN(e-value:1.1e-22;bit-score:104.0)"; Scaffold003 rebuild exon 1452607 1452729 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild exon 1453031 1453161 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild exon 1453242 1453417 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild exon 1453479 1453788 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild exon 1454012 1454364 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild exon 1454649 1455075 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild exon 1455315 1455372 . - . gene_id "RvY_06928"; transcript_id "RvY_06928.1"; Scaffold003 rebuild transcript 1455915 1456542 . + . gene_id "RvY_06929"; transcript_id "RvY_06929.1"; gene_name "RP-L36e"; annotation "large subunit ribosomal protein L36e"; Pfam "[Ribosomal_L36e] Ribosomal protein L36e"; KO "K02920"; similar_genes "RL36_IXOSC(e-value:5.8e-24;bit-score:109.0)"; Scaffold003 rebuild exon 1455915 1456013 . + . gene_id "RvY_06929"; transcript_id "RvY_06929.1"; Scaffold003 rebuild exon 1456085 1456219 . + . gene_id "RvY_06929"; transcript_id "RvY_06929.1"; Scaffold003 rebuild exon 1456456 1456542 . + . gene_id "RvY_06929"; transcript_id "RvY_06929.1"; Scaffold003 rebuild transcript 1456971 1459225 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; gene_name "PH_syntrophin"; annotation "hypothetical protein."; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains."; similar_genes "SNTB2_HUMAN(e-value:4.4e-22;bit-score:102.0)"; Scaffold003 rebuild exon 1456971 1457063 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild exon 1457151 1457335 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild exon 1457565 1457794 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild exon 1457854 1457993 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild exon 1458068 1458379 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild exon 1458570 1458658 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild exon 1458727 1459225 . - . gene_id "RvY_06930"; transcript_id "RvY_06930.1"; Scaffold003 rebuild transcript 1461189 1461881 . - . gene_id "RvY_06931"; transcript_id "RvY_06931.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1461189 1461322 . - . gene_id "RvY_06931"; transcript_id "RvY_06931.1"; Scaffold003 rebuild exon 1461468 1461737 . - . gene_id "RvY_06931"; transcript_id "RvY_06931.1"; Scaffold003 rebuild exon 1461827 1461881 . - . gene_id "RvY_06931"; transcript_id "RvY_06931.1"; Scaffold003 rebuild transcript 1462312 1462836 . - . gene_id "RvY_06932"; transcript_id "RvY_06932.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1462312 1462836 . - . gene_id "RvY_06932"; transcript_id "RvY_06932.1"; Scaffold003 rebuild transcript 1462820 1463290 . - . gene_id "RvY_06932"; transcript_id "RvY_06932.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1462820 1463290 . - . gene_id "RvY_06932"; transcript_id "RvY_06932.2"; Scaffold003 rebuild transcript 1464698 1464892 . + . gene_id "RvY_06933"; transcript_id "RvY_06933.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1464698 1464892 . + . gene_id "RvY_06933"; transcript_id "RvY_06933.1"; Scaffold003 rebuild transcript 1469098 1471502 . + . gene_id "RvY_06934"; transcript_id "RvY_06934.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 1469098 1469248 . + . gene_id "RvY_06934"; transcript_id "RvY_06934.1"; Scaffold003 rebuild exon 1469666 1469938 . + . gene_id "RvY_06934"; transcript_id "RvY_06934.1"; Scaffold003 rebuild exon 1470025 1470451 . + . gene_id "RvY_06934"; transcript_id "RvY_06934.1"; Scaffold003 rebuild exon 1470532 1470998 . + . gene_id "RvY_06934"; transcript_id "RvY_06934.1"; Scaffold003 rebuild exon 1471168 1471502 . + . gene_id "RvY_06934"; transcript_id "RvY_06934.1"; Scaffold003 rebuild transcript 1472881 1476021 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; gene_name "EXO1"; annotation "exonuclease 1 [EC:3.1.-.-]"; Pfam "[XPG_I] XPG I-region|[XPG_N] XPG N-terminal domain"; CDD "Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases."; EC "EC3.1.-.-"; KO "K10746"; similar_genes "EXO1_HUMAN(e-value:3.7e-17;bit-score:86.0)"; Scaffold003 rebuild exon 1472881 1473041 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1473133 1473252 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1473316 1473439 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1473713 1473850 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1473923 1474183 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1474257 1474447 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1474563 1474933 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1475125 1475461 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild exon 1475586 1476021 . + . gene_id "RvY_06935"; transcript_id "RvY_06935.1"; Scaffold003 rebuild transcript 1476412 1479645 . - . gene_id "RvY_06936"; transcript_id "RvY_06936.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold003 rebuild exon 1476412 1478762 . - . gene_id "RvY_06936"; transcript_id "RvY_06936.1"; Scaffold003 rebuild exon 1478840 1479070 . - . gene_id "RvY_06936"; transcript_id "RvY_06936.1"; Scaffold003 rebuild exon 1479232 1479464 . - . gene_id "RvY_06936"; transcript_id "RvY_06936.1"; Scaffold003 rebuild exon 1479542 1479645 . - . gene_id "RvY_06936"; transcript_id "RvY_06936.1"; Scaffold003 rebuild transcript 1481090 1489256 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold003 rebuild exon 1481090 1481130 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1481205 1481369 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1481437 1481574 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1481641 1481804 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1481863 1481998 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1482077 1482259 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1482331 1482473 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild exon 1489237 1489256 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.1"; Scaffold003 rebuild transcript 1481090 1482388 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold003 rebuild exon 1481090 1481130 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild exon 1481205 1481369 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild exon 1481437 1481574 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild exon 1481641 1481804 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild exon 1481863 1481998 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild exon 1482077 1482259 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild exon 1482331 1482388 . - . gene_id "RvY_06937"; transcript_id "RvY_06937.2"; Scaffold003 rebuild transcript 1482119 1482471 . + . gene_id "RvY_06938"; transcript_id "RvY_06938.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1482119 1482232 . + . gene_id "RvY_06938"; transcript_id "RvY_06938.1"; Scaffold003 rebuild exon 1482367 1482471 . + . gene_id "RvY_06938"; transcript_id "RvY_06938.1"; Scaffold003 rebuild transcript 1489614 1490649 . + . gene_id "RvY_06939"; transcript_id "RvY_06939.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1489614 1490016 . + . gene_id "RvY_06939"; transcript_id "RvY_06939.1"; Scaffold003 rebuild exon 1490105 1490649 . + . gene_id "RvY_06939"; transcript_id "RvY_06939.1"; Scaffold003 rebuild transcript 1490175 1490654 . - . gene_id "RvY_06940"; transcript_id "RvY_06940.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1490175 1490654 . - . gene_id "RvY_06940"; transcript_id "RvY_06940.1"; Scaffold003 rebuild transcript 1491205 1492816 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1491205 1491369 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.1"; Scaffold003 rebuild exon 1491472 1491633 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.1"; Scaffold003 rebuild exon 1491818 1492816 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.1"; Scaffold003 rebuild transcript 1491010 1492816 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1491010 1491021 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.2"; Scaffold003 rebuild exon 1491818 1492816 . - . gene_id "RvY_06941"; transcript_id "RvY_06941.2"; Scaffold003 rebuild transcript 1496381 1497709 . + . gene_id "RvY_06942"; transcript_id "RvY_06942.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold003 rebuild exon 1496381 1497709 . + . gene_id "RvY_06942"; transcript_id "RvY_06942.1"; Scaffold003 rebuild transcript 1496381 1497709 . + . gene_id "RvY_06942"; transcript_id "RvY_06942.2"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold003 rebuild exon 1496381 1497512 . + . gene_id "RvY_06942"; transcript_id "RvY_06942.2"; Scaffold003 rebuild exon 1497615 1497709 . + . gene_id "RvY_06942"; transcript_id "RvY_06942.2"; Scaffold003 rebuild transcript 1497721 1498734 . + . gene_id "RvY_06943"; transcript_id "RvY_06943.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1497721 1498734 . + . gene_id "RvY_06943"; transcript_id "RvY_06943.1"; Scaffold003 rebuild transcript 1499073 1499908 . - . gene_id "RvY_06944"; transcript_id "RvY_06944.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1499073 1499189 . - . gene_id "RvY_06944"; transcript_id "RvY_06944.1"; Scaffold003 rebuild exon 1499387 1499908 . - . gene_id "RvY_06944"; transcript_id "RvY_06944.1"; Scaffold003 rebuild transcript 1501847 1503816 . + . gene_id "RvY_06945"; transcript_id "RvY_06945.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1501847 1501931 . + . gene_id "RvY_06945"; transcript_id "RvY_06945.1"; Scaffold003 rebuild exon 1503219 1503503 . + . gene_id "RvY_06945"; transcript_id "RvY_06945.1"; Scaffold003 rebuild exon 1503635 1503816 . + . gene_id "RvY_06945"; transcript_id "RvY_06945.1"; Scaffold003 rebuild transcript 1504178 1505004 . - . gene_id "RvY_06946"; transcript_id "RvY_06946.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1] Transposase DDE domain|[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1504178 1504849 . - . gene_id "RvY_06946"; transcript_id "RvY_06946.1"; Scaffold003 rebuild exon 1504993 1505004 . - . gene_id "RvY_06946"; transcript_id "RvY_06946.1"; Scaffold003 rebuild transcript 1504789 1505459 . - . gene_id "RvY_06946"; transcript_id "RvY_06946.2"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1] Transposase DDE domain|[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1504789 1504849 . - . gene_id "RvY_06946"; transcript_id "RvY_06946.2"; Scaffold003 rebuild exon 1504993 1505459 . - . gene_id "RvY_06946"; transcript_id "RvY_06946.2"; Scaffold003 rebuild transcript 1506971 1507642 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1506971 1507642 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.1"; Scaffold003 rebuild transcript 1506845 1507642 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1506845 1506864 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.2"; Scaffold003 rebuild exon 1507120 1507642 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.2"; Scaffold003 rebuild transcript 1506484 1507200 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1506484 1506864 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.3"; Scaffold003 rebuild exon 1507120 1507200 . - . gene_id "RvY_06947"; transcript_id "RvY_06947.3"; Scaffold003 rebuild transcript 1509167 1510829 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1509167 1509388 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.1"; Scaffold003 rebuild exon 1509501 1509769 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.1"; Scaffold003 rebuild exon 1510409 1510829 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.1"; Scaffold003 rebuild transcript 1509453 1510829 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1509453 1509769 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.2"; Scaffold003 rebuild exon 1510409 1510829 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.2"; Scaffold003 rebuild transcript 1510765 1511504 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1510765 1511269 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.3"; Scaffold003 rebuild exon 1511437 1511504 . - . gene_id "RvY_06949"; transcript_id "RvY_06949.3"; Scaffold003 rebuild transcript 1512237 1512704 . + . gene_id "RvY_06950"; transcript_id "RvY_06950.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1512237 1512704 . + . gene_id "RvY_06950"; transcript_id "RvY_06950.1"; Scaffold003 rebuild transcript 1512237 1512721 . + . gene_id "RvY_06950"; transcript_id "RvY_06950.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1512237 1512655 . + . gene_id "RvY_06950"; transcript_id "RvY_06950.2"; Scaffold003 rebuild exon 1512715 1512721 . + . gene_id "RvY_06950"; transcript_id "RvY_06950.2"; Scaffold003 rebuild transcript 1513495 1514044 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1513495 1513621 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.1"; Scaffold003 rebuild exon 1513696 1513907 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.1"; Scaffold003 rebuild exon 1513970 1514044 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.1"; Scaffold003 rebuild transcript 1513741 1514246 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1513741 1513907 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.2"; Scaffold003 rebuild exon 1513970 1514117 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.2"; Scaffold003 rebuild exon 1514214 1514246 . - . gene_id "RvY_06951"; transcript_id "RvY_06951.2"; Scaffold003 rebuild transcript 1520646 1524901 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1520646 1521079 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1521256 1521767 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1521839 1522687 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1522750 1523007 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1523087 1523368 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1523445 1523627 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1523699 1523971 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1524037 1524267 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1524332 1524694 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild exon 1524768 1524901 . + . gene_id "RvY_06952"; transcript_id "RvY_06952.1"; Scaffold003 rebuild transcript 1526049 1527536 . + . gene_id "RvY_06953"; transcript_id "RvY_06953.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1526049 1526485 . + . gene_id "RvY_06953"; transcript_id "RvY_06953.1"; Scaffold003 rebuild exon 1526641 1527020 . + . gene_id "RvY_06953"; transcript_id "RvY_06953.1"; Scaffold003 rebuild exon 1527085 1527536 . + . gene_id "RvY_06953"; transcript_id "RvY_06953.1"; Scaffold003 rebuild transcript 1528136 1529652 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1528136 1528226 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; Scaffold003 rebuild exon 1528299 1528577 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; Scaffold003 rebuild exon 1528704 1528856 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; Scaffold003 rebuild exon 1528927 1529199 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; Scaffold003 rebuild exon 1529286 1529531 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; Scaffold003 rebuild exon 1529612 1529652 . + . gene_id "RvY_06954"; transcript_id "RvY_06954.1"; Scaffold003 rebuild transcript 1530777 1532681 . + . gene_id "RvY_06955"; transcript_id "RvY_06955.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1530777 1531210 . + . gene_id "RvY_06955"; transcript_id "RvY_06955.1"; Scaffold003 rebuild exon 1531369 1531808 . + . gene_id "RvY_06955"; transcript_id "RvY_06955.1"; Scaffold003 rebuild exon 1531869 1532009 . + . gene_id "RvY_06955"; transcript_id "RvY_06955.1"; Scaffold003 rebuild exon 1532246 1532518 . + . gene_id "RvY_06955"; transcript_id "RvY_06955.1"; Scaffold003 rebuild exon 1532587 1532681 . + . gene_id "RvY_06955"; transcript_id "RvY_06955.1"; Scaffold003 rebuild transcript 1532841 1533250 . - . gene_id "RvY_06956"; transcript_id "RvY_06956.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1532841 1533013 . - . gene_id "RvY_06956"; transcript_id "RvY_06956.1"; Scaffold003 rebuild exon 1533028 1533250 . - . gene_id "RvY_06956"; transcript_id "RvY_06956.1"; Scaffold003 rebuild transcript 1533696 1537096 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1533696 1534129 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1534293 1534816 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1534875 1535135 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1535323 1535850 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1535917 1536171 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1536233 1536439 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1536636 1536920 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild exon 1536978 1537096 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.1"; Scaffold003 rebuild transcript 1533696 1535867 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1533696 1534129 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.2"; Scaffold003 rebuild exon 1534293 1534816 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.2"; Scaffold003 rebuild exon 1534875 1535135 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.2"; Scaffold003 rebuild exon 1535323 1535867 . + . gene_id "RvY_06957"; transcript_id "RvY_06957.2"; Scaffold003 rebuild transcript 1537096 1539399 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1537096 1537123 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; Scaffold003 rebuild exon 1537529 1538018 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; Scaffold003 rebuild exon 1538243 1538646 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; Scaffold003 rebuild exon 1538844 1538926 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; Scaffold003 rebuild exon 1538992 1539163 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; Scaffold003 rebuild exon 1539230 1539399 . + . gene_id "RvY_06958"; transcript_id "RvY_06958.1"; Scaffold003 rebuild transcript 1537659 1537823 . - . gene_id "RvY_06959"; transcript_id "RvY_06959.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1537659 1537823 . - . gene_id "RvY_06959"; transcript_id "RvY_06959.1"; Scaffold003 rebuild transcript 1540431 1542130 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1540431 1540464 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.1"; Scaffold003 rebuild exon 1540525 1540596 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.1"; Scaffold003 rebuild exon 1540839 1541183 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.1"; Scaffold003 rebuild exon 1541507 1541781 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.1"; Scaffold003 rebuild exon 1541873 1542130 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.1"; Scaffold003 rebuild transcript 1540431 1542130 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1540431 1540464 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.2"; Scaffold003 rebuild exon 1540839 1541183 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.2"; Scaffold003 rebuild exon 1541507 1541781 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.2"; Scaffold003 rebuild exon 1541873 1542130 . + . gene_id "RvY_06960"; transcript_id "RvY_06960.2"; Scaffold003 rebuild transcript 1542479 1545229 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; annotation "hypothetical protein."; Pfam "[SHQ1] SHQ1 protein"; KO "K14764"; Scaffold003 rebuild exon 1542479 1542991 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; Scaffold003 rebuild exon 1543996 1544248 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; Scaffold003 rebuild exon 1544311 1544761 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; Scaffold003 rebuild exon 1544820 1544881 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; Scaffold003 rebuild exon 1544965 1545032 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; Scaffold003 rebuild exon 1545155 1545229 . - . gene_id "RvY_06961"; transcript_id "RvY_06961.1"; Scaffold003 rebuild transcript 1547122 1547598 . + . gene_id "RvY_06962"; transcript_id "RvY_06962.1"; gene_name "RPB6"; annotation "putative DNA-directed RNA polymerases I, II, and III subunit RPABC2"; Pfam "[RNA_pol_Rpb6] RNA polymerase Rpb6"; CDD "DNA-directed RNA polymerase subunit K; Provisional"; KO "K03014"; similar_genes "RPAB2_CRIGR(e-value:1.0e-29;bit-score:128.0)"; Scaffold003 rebuild exon 1547122 1547232 . + . gene_id "RvY_06962"; transcript_id "RvY_06962.1"; Scaffold003 rebuild exon 1547320 1547598 . + . gene_id "RvY_06962"; transcript_id "RvY_06962.1"; Scaffold003 rebuild transcript 1548418 1548891 . - . gene_id "RvY_06963"; transcript_id "RvY_06963.1"; gene_name "eIF-1A"; annotation "Eukaryotic translation initiation factor 1A, Y-chromosomal"; Pfam "[eIF-1a] Translation initiation factor 1A / IF-1"; CDD "translation initiation factor eIF-1A; Provisional"; KO "K03236"; similar_genes "IF1AY_HUMAN(e-value:2.9e-55;bit-score:213.0)"; Scaffold003 rebuild exon 1548418 1548891 . - . gene_id "RvY_06963"; transcript_id "RvY_06963.1"; Scaffold003 rebuild transcript 1549084 1549353 . - . gene_id "RvY_06964"; transcript_id "RvY_06964.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1549084 1549353 . - . gene_id "RvY_06964"; transcript_id "RvY_06964.1"; Scaffold003 rebuild transcript 1549792 1551242 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; annotation "hypothetical protein."; Pfam "[ELO] GNS1/SUR4 family"; similar_genes "ELOV2_MOUSE(e-value:8.0e-13;bit-score:72.0)"; Scaffold003 rebuild exon 1549792 1549957 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild exon 1550021 1550208 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild exon 1550294 1550380 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild exon 1550445 1550579 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild exon 1550661 1550697 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild exon 1550790 1550914 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild exon 1550976 1551242 . + . gene_id "RvY_06965"; transcript_id "RvY_06965.1"; Scaffold003 rebuild transcript 1551524 1554280 . - . gene_id "RvY_06966"; transcript_id "RvY_06966.1"; gene_name "MAN1A"; annotation "Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; EC "EC3.2.1.113"; KO "K01230"; similar_genes "MA1B1_HUMAN(e-value:1.9e-54;bit-score:210.0)"; Scaffold003 rebuild exon 1551524 1552405 . - . gene_id "RvY_06966"; transcript_id "RvY_06966.1"; Scaffold003 rebuild exon 1552739 1553076 . - . gene_id "RvY_06966"; transcript_id "RvY_06966.1"; Scaffold003 rebuild exon 1553213 1553699 . - . gene_id "RvY_06966"; transcript_id "RvY_06966.1"; Scaffold003 rebuild exon 1553927 1554280 . - . gene_id "RvY_06966"; transcript_id "RvY_06966.1"; Scaffold003 rebuild transcript 1554779 1556433 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.1"; gene_name "PIGA"; annotation "putative Phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit"; Pfam "[Glyco_trans_1_4] Glycosyl transferases group 1|[Glyco_trans_4_4] Glycosyl transferase 4-like domain|[Glyco_transf_4] Glycosyltransferase Family 4|[Glycos_transf_1] Glycosyl transferases group 1|[PIGA] PIGA (GPI anchor biosynthesis)"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder."; EC "EC2.4.1.198"; KO "K03857"; similar_genes "GPI3_SCHPO(e-value:1.1e-33;bit-score:141.0)"; Scaffold003 rebuild exon 1554779 1554939 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.1"; Scaffold003 rebuild exon 1555079 1555739 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.1"; Scaffold003 rebuild exon 1555855 1556433 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.1"; Scaffold003 rebuild transcript 1554779 1556515 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.2"; gene_name "PIGA"; annotation "putative Phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit"; Pfam "[Glyco_trans_1_4] Glycosyl transferases group 1|[Glyco_trans_4_4] Glycosyl transferase 4-like domain|[Glyco_transf_4] Glycosyltransferase Family 4|[Glycos_transf_1] Glycosyl transferases group 1|[PIGA] PIGA (GPI anchor biosynthesis)"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder."; EC "EC2.4.1.198"; KO "K03857"; similar_genes "GPI3_SCHPO(e-value:1.1e-33;bit-score:141.0)"; Scaffold003 rebuild exon 1554779 1554939 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.2"; Scaffold003 rebuild exon 1555079 1555739 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.2"; Scaffold003 rebuild exon 1555855 1556245 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.2"; Scaffold003 rebuild exon 1556403 1556515 . + . gene_id "RvY_06967"; transcript_id "RvY_06967.2"; Scaffold003 rebuild transcript 1557907 1558918 . + . gene_id "RvY_06969"; transcript_id "RvY_06969.1"; gene_name "gmk"; annotation "guanylate kinase [EC:2.7.4.8]"; Pfam "[AAA_16] AAA ATPase domain|[Guanylate_kin] Guanylate kinase|[DUF258] Protein of unknown function, DUF258"; CDD "guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP."; EC "EC2.7.4.8"; KO "K00942"; similar_genes "KGUA_SCHPO(e-value:7.3e-18;bit-score:88.0)"; Scaffold003 rebuild exon 1557907 1558312 . + . gene_id "RvY_06969"; transcript_id "RvY_06969.1"; Scaffold003 rebuild exon 1558545 1558918 . + . gene_id "RvY_06969"; transcript_id "RvY_06969.1"; Scaffold003 rebuild transcript 1559547 1562471 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; annotation "hypothetical protein."; Pfam "[Ric8] Guanine nucleotide exchange factor synembryn"; similar_genes "RIC8_DROPS(e-value:6.3e-17;bit-score:85.0)"; Scaffold003 rebuild exon 1559547 1559682 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1559815 1559934 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1560055 1560214 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1560330 1560435 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1560703 1561104 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1561359 1561723 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1561872 1562079 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1562171 1562218 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild exon 1562388 1562471 . - . gene_id "RvY_06970"; transcript_id "RvY_06970.1"; Scaffold003 rebuild transcript 1563388 1564505 . - . gene_id "RvY_06971"; transcript_id "RvY_06971.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1563388 1563836 . - . gene_id "RvY_06971"; transcript_id "RvY_06971.1"; Scaffold003 rebuild exon 1564094 1564505 . - . gene_id "RvY_06971"; transcript_id "RvY_06971.1"; Scaffold003 rebuild transcript 1564833 1567313 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; gene_name "eIF-2BG"; annotation "translation initiation factor eIF-2B gamma subunit"; Pfam "[NTP_transf_3] MobA-like NTP transferase domain|[NTP_transferase] Nucleotidyl transferase|[Hexapep] Bacterial transferase hexapeptide (six repeats)"; CDD "The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating Scaffold003 rebuild exon 1564833 1564885 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1564977 1565080 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1565146 1565396 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1565676 1566093 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1566307 1566412 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1566502 1566661 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1566726 1566889 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild exon 1567148 1567313 . - . gene_id "RvY_06972"; transcript_id "RvY_06972.1"; Scaffold003 rebuild transcript 1567767 1568869 . - . gene_id "RvY_06973"; transcript_id "RvY_06973.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1567767 1568404 . - . gene_id "RvY_06973"; transcript_id "RvY_06973.1"; Scaffold003 rebuild exon 1568527 1568869 . - . gene_id "RvY_06973"; transcript_id "RvY_06973.1"; Scaffold003 rebuild transcript 1569283 1570219 . + . gene_id "RvY_06974"; transcript_id "RvY_06974.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1569283 1569315 . + . gene_id "RvY_06974"; transcript_id "RvY_06974.1"; Scaffold003 rebuild exon 1569404 1569488 . + . gene_id "RvY_06974"; transcript_id "RvY_06974.1"; Scaffold003 rebuild exon 1569549 1570219 . + . gene_id "RvY_06974"; transcript_id "RvY_06974.1"; Scaffold003 rebuild transcript 1570690 1572217 . - . gene_id "RvY_06975"; transcript_id "RvY_06975.1"; gene_name "PSMD7"; annotation "26S proteasome non-ATPase regulatory subunit 7"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease|[MitMem_reg] Maintenance of mitochondrial structure and function"; KO "K03038"; similar_genes "PSD7_MOUSE(e-value:5.8e-75;bit-score:278.0)"; Scaffold003 rebuild exon 1570690 1571131 . - . gene_id "RvY_06975"; transcript_id "RvY_06975.1"; Scaffold003 rebuild exon 1571394 1571566 . - . gene_id "RvY_06975"; transcript_id "RvY_06975.1"; Scaffold003 rebuild exon 1571644 1571741 . - . gene_id "RvY_06975"; transcript_id "RvY_06975.1"; Scaffold003 rebuild exon 1571858 1571950 . - . gene_id "RvY_06975"; transcript_id "RvY_06975.1"; Scaffold003 rebuild exon 1572034 1572217 . - . gene_id "RvY_06975"; transcript_id "RvY_06975.1"; Scaffold003 rebuild transcript 1573070 1573408 . + . gene_id "RvY_06976"; transcript_id "RvY_06976.1"; annotation "hypothetical protein."; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; Scaffold003 rebuild exon 1573070 1573408 . + . gene_id "RvY_06976"; transcript_id "RvY_06976.1"; Scaffold003 rebuild transcript 1573368 1574008 . + . gene_id "RvY_06976"; transcript_id "RvY_06976.2"; annotation "hypothetical protein."; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; Scaffold003 rebuild exon 1573368 1573453 . + . gene_id "RvY_06976"; transcript_id "RvY_06976.2"; Scaffold003 rebuild exon 1573579 1573699 . + . gene_id "RvY_06976"; transcript_id "RvY_06976.2"; Scaffold003 rebuild exon 1573907 1574008 . + . gene_id "RvY_06976"; transcript_id "RvY_06976.2"; Scaffold003 rebuild transcript 1576963 1578517 . + . gene_id "RvY_06977"; transcript_id "RvY_06977.1"; gene_name "PPP1R3"; annotation "protein phosphatase 1, regulatory (inhibitor) subunit 3"; Pfam "[CBM_21] Putative phosphatase regulatory subunit"; KO "K07189"; similar_genes "PPR3D_HUMAN(e-value:1.2e-09;bit-score:61.0)"; Scaffold003 rebuild exon 1576963 1577488 . + . gene_id "RvY_06977"; transcript_id "RvY_06977.1"; Scaffold003 rebuild exon 1577907 1578517 . + . gene_id "RvY_06977"; transcript_id "RvY_06977.1"; Scaffold003 rebuild transcript 1578986 1580737 . + . gene_id "RvY_06978"; transcript_id "RvY_06978.1"; annotation "hypothetical protein."; Pfam "[F-box-like]"; Scaffold003 rebuild exon 1578986 1579101 . + . gene_id "RvY_06978"; transcript_id "RvY_06978.1"; Scaffold003 rebuild exon 1579163 1579637 . + . gene_id "RvY_06978"; transcript_id "RvY_06978.1"; Scaffold003 rebuild exon 1579710 1579825 . + . gene_id "RvY_06978"; transcript_id "RvY_06978.1"; Scaffold003 rebuild exon 1580563 1580737 . + . gene_id "RvY_06978"; transcript_id "RvY_06978.1"; Scaffold003 rebuild transcript 1580840 1582187 . - . gene_id "RvY_06979"; transcript_id "RvY_06979.1"; annotation "hypothetical protein."; Pfam "[DUF2358] Uncharacterized conserved protein (DUF2358)"; Scaffold003 rebuild exon 1580840 1581414 . - . gene_id "RvY_06979"; transcript_id "RvY_06979.1"; Scaffold003 rebuild exon 1581592 1581950 . - . gene_id "RvY_06979"; transcript_id "RvY_06979.1"; Scaffold003 rebuild exon 1582012 1582187 . - . gene_id "RvY_06979"; transcript_id "RvY_06979.1"; Scaffold003 rebuild transcript 1583224 1584468 . + . gene_id "RvY_06980"; transcript_id "RvY_06980.1"; gene_name "TBP"; annotation "TATA box-binding protein-like protein 2"; Pfam "[TBP] Transcription factor TFIID (or TATA-binding protein, TBP)"; CDD "eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA."; KO "K03120"; similar_genes "TBPL2_XENTR(e-value:1.7e-89;bit-score:326.0)"; Scaffold003 rebuild exon 1583224 1583666 . + . gene_id "RvY_06980"; transcript_id "RvY_06980.1"; Scaffold003 rebuild exon 1583946 1584468 . + . gene_id "RvY_06980"; transcript_id "RvY_06980.1"; Scaffold003 rebuild transcript 1586584 1589579 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.1"; gene_name "(1,2)LDLa"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "(1,2)Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure"; Scaffold003 rebuild exon 1586584 1586719 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.1"; Scaffold003 rebuild exon 1588049 1588275 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.1"; Scaffold003 rebuild exon 1588468 1588630 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.1"; Scaffold003 rebuild exon 1589053 1589579 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.1"; Scaffold003 rebuild transcript 1588513 1589799 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.2"; gene_name "(1,2)LDLa"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "(1,2)Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure"; Scaffold003 rebuild exon 1588513 1588630 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.2"; Scaffold003 rebuild exon 1589053 1589517 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.2"; Scaffold003 rebuild exon 1589618 1589799 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.2"; Scaffold003 rebuild transcript 1586584 1588641 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.3"; gene_name "(1,2)LDLa"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "(1,2)Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure"; Scaffold003 rebuild exon 1586584 1586719 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.3"; Scaffold003 rebuild exon 1588049 1588275 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.3"; Scaffold003 rebuild exon 1588468 1588641 . + . gene_id "RvY_06981"; transcript_id "RvY_06981.3"; Scaffold003 rebuild transcript 1591025 1591327 . + . gene_id "RvY_06982"; transcript_id "RvY_06982.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1591025 1591327 . + . gene_id "RvY_06982"; transcript_id "RvY_06982.1"; Scaffold003 rebuild transcript 1592430 1592747 . - . gene_id "RvY_06983"; transcript_id "RvY_06983.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1592430 1592747 . - . gene_id "RvY_06983"; transcript_id "RvY_06983.1"; Scaffold003 rebuild transcript 1592568 1594262 . + . gene_id "RvY_06984"; transcript_id "RvY_06984.1"; gene_name "FMO-like"; annotation "hypothetical protein."; Pfam "[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[FMO-like] Flavin-binding monooxygenase-like|[K_oxygenase] L-lysine 6-monooxygenase (NADPH-requiring)|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase."; Scaffold003 rebuild exon 1592568 1592800 . + . gene_id "RvY_06984"; transcript_id "RvY_06984.1"; Scaffold003 rebuild exon 1592896 1593043 . + . gene_id "RvY_06984"; transcript_id "RvY_06984.1"; Scaffold003 rebuild exon 1593148 1593308 . + . gene_id "RvY_06984"; transcript_id "RvY_06984.1"; Scaffold003 rebuild exon 1593389 1594262 . + . gene_id "RvY_06984"; transcript_id "RvY_06984.1"; Scaffold003 rebuild transcript 1595596 1597701 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07418"; similar_genes "CP2K3_ONCMY(e-value:2.4e-14;bit-score:77.0)"; Scaffold003 rebuild exon 1595596 1595783 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; Scaffold003 rebuild exon 1595953 1596216 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; Scaffold003 rebuild exon 1596287 1596466 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; Scaffold003 rebuild exon 1596549 1597301 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; Scaffold003 rebuild exon 1597403 1597596 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; Scaffold003 rebuild exon 1597688 1597701 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.1"; Scaffold003 rebuild transcript 1595596 1597607 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.2"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07418"; similar_genes "CP2K3_ONCMY(e-value:2.4e-14;bit-score:77.0)"; Scaffold003 rebuild exon 1595596 1595783 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.2"; Scaffold003 rebuild exon 1595953 1596216 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.2"; Scaffold003 rebuild exon 1596287 1596466 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.2"; Scaffold003 rebuild exon 1596549 1597301 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.2"; Scaffold003 rebuild exon 1597403 1597607 . - . gene_id "RvY_06985"; transcript_id "RvY_06985.2"; Scaffold003 rebuild transcript 1598362 1599935 . + . gene_id "RvY_06986"; transcript_id "RvY_06986.1"; gene_name "Tdh"; annotation "hypothetical protein."; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]"; Scaffold003 rebuild exon 1598362 1598828 . + . gene_id "RvY_06986"; transcript_id "RvY_06986.1"; Scaffold003 rebuild exon 1599119 1599935 . + . gene_id "RvY_06986"; transcript_id "RvY_06986.1"; Scaffold003 rebuild transcript 1601343 1602044 . - . gene_id "RvY_06987"; transcript_id "RvY_06987.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold003 rebuild exon 1601343 1602044 . - . gene_id "RvY_06987"; transcript_id "RvY_06987.1"; Scaffold003 rebuild transcript 1602090 1602845 . - . gene_id "RvY_06988"; transcript_id "RvY_06988.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1602090 1602845 . - . gene_id "RvY_06988"; transcript_id "RvY_06988.1"; Scaffold003 rebuild transcript 1607244 1607669 . - . gene_id "RvY_06989"; transcript_id "RvY_06989.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1607244 1607669 . - . gene_id "RvY_06989"; transcript_id "RvY_06989.1"; Scaffold003 rebuild transcript 1607696 1608199 . - . gene_id "RvY_06990"; transcript_id "RvY_06990.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1607696 1608199 . - . gene_id "RvY_06990"; transcript_id "RvY_06990.1"; Scaffold003 rebuild transcript 1609378 1610836 . + . gene_id "RvY_06991"; transcript_id "RvY_06991.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1609378 1609473 . + . gene_id "RvY_06991"; transcript_id "RvY_06991.1"; Scaffold003 rebuild exon 1610681 1610836 . + . gene_id "RvY_06991"; transcript_id "RvY_06991.1"; Scaffold003 rebuild transcript 1611179 1612555 . - . gene_id "RvY_06992"; transcript_id "RvY_06992.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 1611179 1612555 . - . gene_id "RvY_06992"; transcript_id "RvY_06992.1"; Scaffold003 rebuild transcript 1617652 1617903 . - . gene_id "RvY_06993"; transcript_id "RvY_06993.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1617652 1617903 . - . gene_id "RvY_06993"; transcript_id "RvY_06993.1"; Scaffold003 rebuild transcript 1619213 1619542 . - . gene_id "RvY_06994"; transcript_id "RvY_06994.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1619213 1619542 . - . gene_id "RvY_06994"; transcript_id "RvY_06994.1"; Scaffold003 rebuild transcript 1620791 1620958 . + . gene_id "RvY_06995"; transcript_id "RvY_06995.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1620791 1620958 . + . gene_id "RvY_06995"; transcript_id "RvY_06995.1"; Scaffold003 rebuild transcript 1621454 1621615 . + . gene_id "RvY_06996"; transcript_id "RvY_06996.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1621454 1621615 . + . gene_id "RvY_06996"; transcript_id "RvY_06996.1"; Scaffold003 rebuild transcript 1622938 1623899 . - . gene_id "RvY_06997"; transcript_id "RvY_06997.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1622938 1623111 . - . gene_id "RvY_06997"; transcript_id "RvY_06997.1"; Scaffold003 rebuild exon 1623289 1623464 . - . gene_id "RvY_06997"; transcript_id "RvY_06997.1"; Scaffold003 rebuild exon 1623677 1623899 . - . gene_id "RvY_06997"; transcript_id "RvY_06997.1"; Scaffold003 rebuild transcript 1622556 1622945 . - . gene_id "RvY_06997"; transcript_id "RvY_06997.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1622556 1622945 . - . gene_id "RvY_06997"; transcript_id "RvY_06997.2"; Scaffold003 rebuild transcript 1626768 1627640 . - . gene_id "RvY_06998"; transcript_id "RvY_06998.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1626768 1627240 . - . gene_id "RvY_06998"; transcript_id "RvY_06998.1"; Scaffold003 rebuild exon 1627538 1627640 . - . gene_id "RvY_06998"; transcript_id "RvY_06998.1"; Scaffold003 rebuild transcript 1629267 1635370 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; gene_name "KCNHN"; annotation "Potassium voltage-gated channel protein eag"; Pfam "[Ion_trans_2] Ion channel|[cNMP_binding] Cyclic nucleotide-binding domain|[PAS] PAS fold|[PAS_9] PAS domain|[Ion_trans] Ion transport protein"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "K05322"; similar_genes "KCNAE_DROME(e-value:5.9e-96;bit-score:348.0)"; Scaffold003 rebuild exon 1629267 1630070 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1630261 1630460 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1630644 1630896 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1630983 1631182 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1631432 1631846 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1632041 1632154 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1632233 1632628 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1632696 1632820 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1632879 1633007 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1633099 1633172 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1633471 1633627 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild exon 1635283 1635370 . - . gene_id "RvY_06999"; transcript_id "RvY_06999.1"; Scaffold003 rebuild transcript 1638459 1643516 . - . gene_id "RvY_07000"; transcript_id "RvY_07000.1"; gene_name "APP"; annotation "amyloid beta (A4) protein"; Pfam "[APP_Cu_bd] Copper-binding of amyloid precursor, CuBD|[APP_E2] E2 domain of amyloid precursor protein|[APP_amyloid] beta-amyloid precursor protein C-terminus|[APP_N] Amyloid A4 N-terminal heparin-binding"; CDD "Amyloid A4 extracellular domain."; KO "K04520"; Scaffold003 rebuild exon 1638459 1639097 . - . gene_id "RvY_07000"; transcript_id "RvY_07000.1"; Scaffold003 rebuild exon 1639313 1639712 . - . gene_id "RvY_07000"; transcript_id "RvY_07000.1"; Scaffold003 rebuild exon 1640115 1640419 . - . gene_id "RvY_07000"; transcript_id "RvY_07000.1"; Scaffold003 rebuild exon 1642716 1643516 . - . gene_id "RvY_07000"; transcript_id "RvY_07000.1"; Scaffold003 rebuild transcript 1647255 1650980 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.71"; similar_genes "ECE1_RAT(e-value:2.5e-18;bit-score:90.0)"; Scaffold003 rebuild exon 1647255 1647351 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1647445 1647630 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1647845 1648006 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1648139 1648219 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1648348 1648748 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1649021 1649509 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1649635 1649814 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1649886 1650054 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1650212 1650331 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1650402 1650592 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild exon 1650696 1650980 . + . gene_id "RvY_07001"; transcript_id "RvY_07001.1"; Scaffold003 rebuild transcript 1651475 1654723 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.11"; similar_genes "MMEL1_HUMAN(e-value:4.8e-17;bit-score:86.0)"; Scaffold003 rebuild exon 1651475 1651679 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1651766 1651924 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1651998 1652087 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1652289 1652692 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1652879 1653370 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1653433 1653612 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1653676 1653844 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1653912 1654031 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1654142 1654335 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild exon 1654439 1654723 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.1"; Scaffold003 rebuild transcript 1651475 1654723 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.11"; similar_genes "MMEL1_HUMAN(e-value:4.8e-17;bit-score:86.0)"; Scaffold003 rebuild exon 1651475 1651679 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1651766 1651924 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1651998 1652075 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1652289 1652692 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1652879 1653370 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1653433 1653612 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1653676 1653844 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1653912 1654031 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1654142 1654335 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild exon 1654439 1654723 . + . gene_id "RvY_07002"; transcript_id "RvY_07002.2"; Scaffold003 rebuild transcript 1655845 1656228 . - . gene_id "RvY_07003"; transcript_id "RvY_07003.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1655845 1656228 . - . gene_id "RvY_07003"; transcript_id "RvY_07003.1"; Scaffold003 rebuild transcript 1660240 1663192 . + . gene_id "RvY_07004"; transcript_id "RvY_07004.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold003 rebuild exon 1660240 1661184 . + . gene_id "RvY_07004"; transcript_id "RvY_07004.1"; Scaffold003 rebuild exon 1662620 1663192 . + . gene_id "RvY_07004"; transcript_id "RvY_07004.1"; Scaffold003 rebuild transcript 1666603 1666863 . - . gene_id "RvY_07005"; transcript_id "RvY_07005.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1666603 1666863 . - . gene_id "RvY_07005"; transcript_id "RvY_07005.1"; Scaffold003 rebuild transcript 1666893 1668097 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1666893 1667029 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.1"; Scaffold003 rebuild exon 1667100 1667565 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.1"; Scaffold003 rebuild exon 1667855 1668097 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.1"; Scaffold003 rebuild transcript 1667089 1667883 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1667089 1667566 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.2"; Scaffold003 rebuild exon 1667855 1667883 . - . gene_id "RvY_07006"; transcript_id "RvY_07006.2"; Scaffold003 rebuild transcript 1671573 1677224 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; annotation "hypothetical protein."; Pfam "[MAM]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; Scaffold003 rebuild exon 1671573 1671633 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1671723 1672118 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1672193 1672555 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1672643 1673197 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1673268 1673603 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1673871 1674860 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1676356 1676717 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild exon 1676787 1677224 . + . gene_id "RvY_07007"; transcript_id "RvY_07007.1"; Scaffold003 rebuild transcript 1677706 1679469 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; gene_name "COG5273"; annotation "putative Palmitoyltransferase ZDHHC7"; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDHC7_RAT(e-value:6.9e-46;bit-score:182.0)"; Scaffold003 rebuild exon 1677706 1677757 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1677830 1677990 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1678075 1678205 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1678273 1678354 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1678442 1678492 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1678580 1678625 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1678782 1678906 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild exon 1679149 1679469 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.1"; Scaffold003 rebuild transcript 1677826 1679469 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; gene_name "COG5273"; annotation "putative Palmitoyltransferase ZDHHC7"; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDHC7_RAT(e-value:6.9e-46;bit-score:182.0)"; Scaffold003 rebuild exon 1677826 1677990 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild exon 1678075 1678205 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild exon 1678273 1678354 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild exon 1678442 1678492 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild exon 1678580 1678625 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild exon 1678782 1678906 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild exon 1679149 1679469 . - . gene_id "RvY_07008"; transcript_id "RvY_07008.2"; Scaffold003 rebuild transcript 1678091 1678360 . + . gene_id "RvY_07009"; transcript_id "RvY_07009.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1678091 1678360 . + . gene_id "RvY_07009"; transcript_id "RvY_07009.1"; Scaffold003 rebuild transcript 1680226 1681979 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; gene_name "(1)FUT4"; annotation "(1)galactoside alpha-1,3-fucosyltransferase 4 [EC:2.4.1.-](2,3)hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-|EC2.4.1.214(2)EC2.4.1.214"; KO "(1)K07632"; similar_genes "(1,2)FUCTA_DROME(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 1680226 1680248 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; Scaffold003 rebuild exon 1680377 1680555 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; Scaffold003 rebuild exon 1680631 1680680 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; Scaffold003 rebuild exon 1680874 1681171 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; Scaffold003 rebuild exon 1681245 1681351 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; Scaffold003 rebuild exon 1681434 1681979 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.1"; Scaffold003 rebuild transcript 1680119 1681504 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.2"; gene_name "(1)FUT4"; annotation "(1)galactoside alpha-1,3-fucosyltransferase 4 [EC:2.4.1.-](2,3)hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-|EC2.4.1.214(2)EC2.4.1.214"; KO "(1)K07632"; similar_genes "(1,2)FUCTA_DROME(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 1680119 1680248 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.2"; Scaffold003 rebuild exon 1680337 1680555 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.2"; Scaffold003 rebuild exon 1680631 1680680 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.2"; Scaffold003 rebuild exon 1680874 1681351 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.2"; Scaffold003 rebuild exon 1681434 1681504 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.2"; Scaffold003 rebuild transcript 1681241 1681979 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.3"; gene_name "(1)FUT4"; annotation "(1)galactoside alpha-1,3-fucosyltransferase 4 [EC:2.4.1.-](2,3)hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-|EC2.4.1.214(2)EC2.4.1.214"; KO "(1)K07632"; similar_genes "(1,2)FUCTA_DROME(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 1681241 1681351 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.3"; Scaffold003 rebuild exon 1681434 1681979 . - . gene_id "RvY_07010"; transcript_id "RvY_07010.3"; Scaffold003 rebuild transcript 1681989 1682351 . + . gene_id "RvY_07011"; transcript_id "RvY_07011.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1681989 1682351 . + . gene_id "RvY_07011"; transcript_id "RvY_07011.1"; Scaffold003 rebuild transcript 1682380 1683737 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; gene_name "RRP42"; annotation "exosome complex component RRP42"; Pfam "[RNase_PH] 3' exoribonuclease family, domain 1"; CDD "exosome complex RNA-binding protein Rrp42; Provisional"; EC "EC3.1.13.-"; KO "K12589"; similar_genes "EXOS7_MOUSE(e-value:1.0e-08;bit-score:58.0)"; Scaffold003 rebuild exon 1682380 1682475 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild exon 1682562 1682726 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild exon 1682790 1682984 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild exon 1683047 1683215 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild exon 1683288 1683382 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild exon 1683455 1683559 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild exon 1683636 1683737 . - . gene_id "RvY_07012"; transcript_id "RvY_07012.1"; Scaffold003 rebuild transcript 1684291 1684470 . - . gene_id "RvY_07013"; transcript_id "RvY_07013.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1684291 1684470 . - . gene_id "RvY_07013"; transcript_id "RvY_07013.1"; Scaffold003 rebuild transcript 1685789 1687652 . + . gene_id "RvY_07014"; transcript_id "RvY_07014.1"; annotation "hypothetical protein."; Pfam "[VPS9] Vacuolar sorting protein 9 (VPS9) domain"; Scaffold003 rebuild exon 1685789 1686133 . + . gene_id "RvY_07014"; transcript_id "RvY_07014.1"; Scaffold003 rebuild exon 1686376 1686963 . + . gene_id "RvY_07014"; transcript_id "RvY_07014.1"; Scaffold003 rebuild exon 1687065 1687652 . + . gene_id "RvY_07014"; transcript_id "RvY_07014.1"; Scaffold003 rebuild transcript 1688614 1689232 . - . gene_id "RvY_07015"; transcript_id "RvY_07015.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1688614 1688670 . - . gene_id "RvY_07015"; transcript_id "RvY_07015.1"; Scaffold003 rebuild exon 1688745 1688859 . - . gene_id "RvY_07015"; transcript_id "RvY_07015.1"; Scaffold003 rebuild exon 1688962 1689056 . - . gene_id "RvY_07015"; transcript_id "RvY_07015.1"; Scaffold003 rebuild exon 1689182 1689232 . - . gene_id "RvY_07015"; transcript_id "RvY_07015.1"; Scaffold003 rebuild transcript 1690056 1692475 . + . gene_id "RvY_07016"; transcript_id "RvY_07016.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1690056 1690313 . + . gene_id "RvY_07016"; transcript_id "RvY_07016.1"; Scaffold003 rebuild exon 1690372 1691169 . + . gene_id "RvY_07016"; transcript_id "RvY_07016.1"; Scaffold003 rebuild exon 1691400 1691571 . + . gene_id "RvY_07016"; transcript_id "RvY_07016.1"; Scaffold003 rebuild exon 1691686 1692060 . + . gene_id "RvY_07016"; transcript_id "RvY_07016.1"; Scaffold003 rebuild exon 1692255 1692475 . + . gene_id "RvY_07016"; transcript_id "RvY_07016.1"; Scaffold003 rebuild transcript 1693387 1696408 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; gene_name "Qor"; annotation "putative Synaptic vesicle membrane protein VAT-1 homolog-like"; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N_2] Zinc-binding dehydrogenase|[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]"; EC "EC1.-.-.-"; similar_genes "VAT1L_MOUSE(e-value:2.3e-27;bit-score:120.0)"; Scaffold003 rebuild exon 1693387 1693601 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; Scaffold003 rebuild exon 1693883 1694024 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; Scaffold003 rebuild exon 1694280 1694492 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; Scaffold003 rebuild exon 1695198 1695340 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; Scaffold003 rebuild exon 1695484 1695643 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; Scaffold003 rebuild exon 1695881 1696408 . + . gene_id "RvY_07017"; transcript_id "RvY_07017.1"; Scaffold003 rebuild transcript 1697454 1699052 . + . gene_id "RvY_07018"; transcript_id "RvY_07018.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold003 rebuild exon 1697454 1697673 . + . gene_id "RvY_07018"; transcript_id "RvY_07018.1"; Scaffold003 rebuild exon 1697794 1697979 . + . gene_id "RvY_07018"; transcript_id "RvY_07018.1"; Scaffold003 rebuild exon 1698108 1698325 . + . gene_id "RvY_07018"; transcript_id "RvY_07018.1"; Scaffold003 rebuild exon 1698568 1698688 . + . gene_id "RvY_07018"; transcript_id "RvY_07018.1"; Scaffold003 rebuild exon 1698754 1699052 . + . gene_id "RvY_07018"; transcript_id "RvY_07018.1"; Scaffold003 rebuild transcript 1699316 1700355 . - . gene_id "RvY_07019"; transcript_id "RvY_07019.1"; annotation "hypothetical protein."; Pfam "[PIN_4] PIN domain"; Scaffold003 rebuild exon 1699316 1699723 . - . gene_id "RvY_07019"; transcript_id "RvY_07019.1"; Scaffold003 rebuild exon 1699960 1700355 . - . gene_id "RvY_07019"; transcript_id "RvY_07019.1"; Scaffold003 rebuild transcript 1702428 1705283 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; gene_name "IMPA"; annotation "putative Inositol monophosphatase 1"; Pfam "[Inositol_P] Inositol monophosphatase family"; CDD "IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria."; EC "EC3.1.3.25"; KO "K01092"; similar_genes "IMPA1_BOVIN(e-value:2.5e-35;bit-score:146.0)"; Scaffold003 rebuild exon 1702428 1702534 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1702619 1702770 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1704198 1704306 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1704423 1704531 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1704711 1704790 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1704861 1704931 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1704989 1705122 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild exon 1705206 1705283 . - . gene_id "RvY_07020"; transcript_id "RvY_07020.1"; Scaffold003 rebuild transcript 1705966 1707864 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; annotation "putative Solute carrier family 25 member 36"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15116"; similar_genes "S2536_MOUSE(e-value:8.0e-30;bit-score:128.0)"; Scaffold003 rebuild exon 1705966 1706042 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild exon 1706264 1706407 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild exon 1706509 1706780 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild exon 1706862 1706928 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild exon 1707026 1707204 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild exon 1707281 1707535 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild exon 1707827 1707864 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.1"; Scaffold003 rebuild transcript 1705966 1707864 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; annotation "putative Solute carrier family 25 member 36"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15116"; similar_genes "S2536_MOUSE(e-value:8.0e-30;bit-score:128.0)"; Scaffold003 rebuild exon 1705966 1706042 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1706264 1706407 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1706509 1706780 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1706862 1706928 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1707026 1707204 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1707281 1707380 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1707435 1707535 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild exon 1707827 1707864 . - . gene_id "RvY_07021"; transcript_id "RvY_07021.2"; Scaffold003 rebuild transcript 1708872 1709583 . - . gene_id "RvY_07022"; transcript_id "RvY_07022.1"; gene_name "UBE2G2"; annotation "Ubiquitin-conjugating enzyme E2 G2"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K04555"; similar_genes "UB2G2_HUMAN(e-value:2.4e-65;bit-score:246.0)"; Scaffold003 rebuild exon 1708872 1709305 . - . gene_id "RvY_07022"; transcript_id "RvY_07022.1"; Scaffold003 rebuild exon 1709517 1709583 . - . gene_id "RvY_07022"; transcript_id "RvY_07022.1"; Scaffold003 rebuild transcript 1710261 1713344 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; annotation "hypothetical protein."; Pfam "[Tcf25] Transcriptional repressor TCF25"; Scaffold003 rebuild exon 1710261 1710948 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1711006 1711230 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1711433 1711616 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1711822 1712107 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1712306 1712535 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1712598 1712700 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1712911 1713159 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild exon 1713219 1713344 . + . gene_id "RvY_07023"; transcript_id "RvY_07023.1"; Scaffold003 rebuild transcript 1714632 1715884 . + . gene_id "RvY_07024"; transcript_id "RvY_07024.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1714632 1714693 . + . gene_id "RvY_07024"; transcript_id "RvY_07024.1"; Scaffold003 rebuild exon 1715668 1715764 . + . gene_id "RvY_07024"; transcript_id "RvY_07024.1"; Scaffold003 rebuild exon 1715855 1715884 . + . gene_id "RvY_07024"; transcript_id "RvY_07024.1"; Scaffold003 rebuild transcript 1717106 1718507 . + . gene_id "RvY_07025"; transcript_id "RvY_07025.1"; gene_name "PcbC"; annotation "hypothetical protein."; Pfam "[DIOX_N] non-haem dioxygenase in morphine synthesis N-terminal|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Isopenicillin N synthase and related dioxygenases [General function prediction only]"; Scaffold003 rebuild exon 1717106 1717240 . + . gene_id "RvY_07025"; transcript_id "RvY_07025.1"; Scaffold003 rebuild exon 1717367 1717494 . + . gene_id "RvY_07025"; transcript_id "RvY_07025.1"; Scaffold003 rebuild exon 1717596 1717659 . + . gene_id "RvY_07025"; transcript_id "RvY_07025.1"; Scaffold003 rebuild exon 1717784 1718200 . + . gene_id "RvY_07025"; transcript_id "RvY_07025.1"; Scaffold003 rebuild exon 1718280 1718507 . + . gene_id "RvY_07025"; transcript_id "RvY_07025.1"; Scaffold003 rebuild transcript 1718548 1718796 . - . gene_id "RvY_07026"; transcript_id "RvY_07026.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1718548 1718796 . - . gene_id "RvY_07026"; transcript_id "RvY_07026.1"; Scaffold003 rebuild transcript 1719907 1720929 . + . gene_id "RvY_07027"; transcript_id "RvY_07027.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1719907 1720929 . + . gene_id "RvY_07027"; transcript_id "RvY_07027.1"; Scaffold003 rebuild transcript 1721474 1723014 . + . gene_id "RvY_07028"; transcript_id "RvY_07028.1"; annotation "hypothetical protein."; Pfam "[PIN_4] PIN domain"; Scaffold003 rebuild exon 1721474 1721712 . + . gene_id "RvY_07028"; transcript_id "RvY_07028.1"; Scaffold003 rebuild exon 1721955 1722490 . + . gene_id "RvY_07028"; transcript_id "RvY_07028.1"; Scaffold003 rebuild exon 1722707 1723014 . + . gene_id "RvY_07028"; transcript_id "RvY_07028.1"; Scaffold003 rebuild transcript 1723452 1724777 . + . gene_id "RvY_07029"; transcript_id "RvY_07029.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1723452 1723768 . + . gene_id "RvY_07029"; transcript_id "RvY_07029.1"; Scaffold003 rebuild exon 1723976 1724517 . + . gene_id "RvY_07029"; transcript_id "RvY_07029.1"; Scaffold003 rebuild exon 1724587 1724777 . + . gene_id "RvY_07029"; transcript_id "RvY_07029.1"; Scaffold003 rebuild transcript 1724880 1726487 . - . gene_id "RvY_07030"; transcript_id "RvY_07030.1"; annotation "hypothetical protein."; Pfam "[SET]"; Scaffold003 rebuild exon 1724880 1725500 . - . gene_id "RvY_07030"; transcript_id "RvY_07030.1"; Scaffold003 rebuild exon 1725747 1726276 . - . gene_id "RvY_07030"; transcript_id "RvY_07030.1"; Scaffold003 rebuild exon 1726355 1726487 . - . gene_id "RvY_07030"; transcript_id "RvY_07030.1"; Scaffold003 rebuild transcript 1726962 1727498 . - . gene_id "RvY_07031"; transcript_id "RvY_07031.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1726962 1727498 . - . gene_id "RvY_07031"; transcript_id "RvY_07031.1"; Scaffold003 rebuild transcript 1728353 1733515 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; gene_name "(1)HIPK(2)S_TKc"; annotation "Homeodomain-interacting protein kinase 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH.(2)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "(1)K08826"; similar_genes "(1)HIPK2_HUMAN(e-value:3.8e-142;bit-score:501.0)(2)HIPK2_HUMAN(e-value:7.0e-135;bit-score:477.0)"; Scaffold003 rebuild exon 1728353 1728727 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1728800 1729193 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1729412 1729554 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1729777 1730169 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1730533 1730754 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1730845 1730985 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1731049 1731436 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1731661 1732049 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1732305 1732748 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild exon 1733108 1733515 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.1"; Scaffold003 rebuild transcript 1728353 1731048 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; gene_name "(1)HIPK(2)S_TKc"; annotation "Homeodomain-interacting protein kinase 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH.(2)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "(1)K08826"; similar_genes "(1)HIPK2_HUMAN(e-value:3.8e-142;bit-score:501.0)(2)HIPK2_HUMAN(e-value:7.0e-135;bit-score:477.0)"; Scaffold003 rebuild exon 1728353 1728727 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; Scaffold003 rebuild exon 1728800 1729193 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; Scaffold003 rebuild exon 1729412 1729554 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; Scaffold003 rebuild exon 1729777 1730169 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; Scaffold003 rebuild exon 1730533 1730754 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; Scaffold003 rebuild exon 1730845 1731048 . + . gene_id "RvY_07032"; transcript_id "RvY_07032.2"; Scaffold003 rebuild transcript 1733653 1734000 . + . gene_id "RvY_07033"; transcript_id "RvY_07033.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1733653 1734000 . + . gene_id "RvY_07033"; transcript_id "RvY_07033.1"; Scaffold003 rebuild transcript 1734407 1734640 . + . gene_id "RvY_07034"; transcript_id "RvY_07034.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1734407 1734640 . + . gene_id "RvY_07034"; transcript_id "RvY_07034.1"; Scaffold003 rebuild transcript 1734641 1745428 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; gene_name "(2)GPR158"; annotation "(1)hypothetical protein.(2)G protein-coupled receptor 158"; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; KO "(2)K08469"; Scaffold003 rebuild exon 1734641 1735231 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1735477 1735695 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1735767 1735872 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1735945 1736083 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1736167 1736381 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1736581 1736690 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1736832 1737098 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1737297 1737449 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1737564 1737684 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1738308 1738479 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1744476 1744895 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild exon 1745164 1745428 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.1"; Scaffold003 rebuild transcript 1734641 1751066 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; gene_name "(2)GPR158"; annotation "(1)hypothetical protein.(2)G protein-coupled receptor 158"; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; KO "(2)K08469"; Scaffold003 rebuild exon 1734641 1735231 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1735477 1735695 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1735767 1735872 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1735945 1736083 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1736167 1736381 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1736581 1736690 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1736832 1737098 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1737297 1737449 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1737564 1737684 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1738308 1738479 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild exon 1751027 1751066 . - . gene_id "RvY_07035"; transcript_id "RvY_07035.2"; Scaffold003 rebuild transcript 1740853 1741646 . + . gene_id "RvY_07036"; transcript_id "RvY_07036.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1740853 1741074 . + . gene_id "RvY_07036"; transcript_id "RvY_07036.1"; Scaffold003 rebuild exon 1741473 1741646 . + . gene_id "RvY_07036"; transcript_id "RvY_07036.1"; Scaffold003 rebuild transcript 1744362 1744859 . + . gene_id "RvY_07037"; transcript_id "RvY_07037.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1744362 1744859 . + . gene_id "RvY_07037"; transcript_id "RvY_07037.1"; Scaffold003 rebuild transcript 1751323 1751846 . - . gene_id "RvY_07038"; transcript_id "RvY_07038.1"; gene_name "FucU"; annotation "putative Protein fucU homolog"; Pfam "[RbsD_FucU] RbsD / FucU transport protein family"; CDD "Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]"; similar_genes "CJ125_HUMAN(e-value:8.1e-32;bit-score:135.0)"; Scaffold003 rebuild exon 1751323 1751696 . - . gene_id "RvY_07038"; transcript_id "RvY_07038.1"; Scaffold003 rebuild exon 1751762 1751846 . - . gene_id "RvY_07038"; transcript_id "RvY_07038.1"; Scaffold003 rebuild transcript 1752784 1761798 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; gene_name "SCC2"; annotation "cohesin loading factor subunit SCC2"; Pfam "[Nipped-B_C] Sister chromatid cohesion C-terminus|[Cohesin_HEAT] HEAT repeat associated with sister chromatid cohesion|[HEAT_2] HEAT repeats"; KO "K06672"; similar_genes "NIPBL_MOUSE(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 1752784 1753155 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1753444 1753971 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1754683 1754886 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1754968 1755075 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1755177 1755547 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1755608 1755932 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1756005 1756184 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1756247 1756633 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1756909 1757280 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1757489 1757743 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1757813 1758016 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1758089 1758398 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1758504 1758976 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1759176 1759433 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1759713 1760279 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1760495 1760940 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1761041 1761186 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1761277 1761436 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild exon 1761513 1761798 . - . gene_id "RvY_07039"; transcript_id "RvY_07039.1"; Scaffold003 rebuild transcript 1762922 1764774 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; gene_name "PRPF38B"; annotation "Pre-mRNA-splicing factor 38B"; Pfam "[PRP38] PRP38 family"; KO "K12850"; similar_genes "(1)PR38B_HUMAN(e-value:3.8e-74;bit-score:275.0)(2)PR38B_HUMAN(e-value:1.8e-82;bit-score:303.0)"; Scaffold003 rebuild exon 1762922 1763008 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1763080 1763103 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1763160 1763228 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1763333 1763545 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1763633 1763853 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1763915 1763944 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1764073 1764447 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild exon 1764540 1764774 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.1"; Scaffold003 rebuild transcript 1762751 1763963 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; gene_name "PRPF38B"; annotation "Pre-mRNA-splicing factor 38B"; Pfam "[PRP38] PRP38 family"; KO "K12850"; similar_genes "(1)PR38B_HUMAN(e-value:3.8e-74;bit-score:275.0)(2)PR38B_HUMAN(e-value:1.8e-82;bit-score:303.0)"; Scaffold003 rebuild exon 1762751 1762851 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild exon 1762906 1763008 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild exon 1763080 1763103 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild exon 1763160 1763228 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild exon 1763333 1763545 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild exon 1763633 1763853 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild exon 1763915 1763963 . + . gene_id "RvY_07040"; transcript_id "RvY_07040.2"; Scaffold003 rebuild transcript 1765644 1766555 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.1"; gene_name "(1)ZNRF"; annotation "(1)E3 ubiquitin-protein ligase ZNRF [EC:6.3.2.19](2)hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain"; EC "(1)EC6.3.2.-|EC6.3.2.19(2)EC6.3.2.-"; KO "(1)K10694"; similar_genes "(1)ZNRF1_DANRE(e-value:8.4e-19;bit-score:92.0)(2)ZNRF2_HUMAN(e-value:7.6e-07;bit-score:52.0)"; Scaffold003 rebuild exon 1765644 1766043 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.1"; Scaffold003 rebuild exon 1766106 1766201 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.1"; Scaffold003 rebuild exon 1766274 1766382 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.1"; Scaffold003 rebuild exon 1766498 1766555 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.1"; Scaffold003 rebuild transcript 1765644 1766242 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.2"; gene_name "(1)ZNRF"; annotation "(1)E3 ubiquitin-protein ligase ZNRF [EC:6.3.2.19](2)hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain"; EC "(1)EC6.3.2.-|EC6.3.2.19(2)EC6.3.2.-"; KO "(1)K10694"; similar_genes "(1)ZNRF1_DANRE(e-value:8.4e-19;bit-score:92.0)(2)ZNRF2_HUMAN(e-value:7.6e-07;bit-score:52.0)"; Scaffold003 rebuild exon 1765644 1766043 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.2"; Scaffold003 rebuild exon 1766106 1766242 . + . gene_id "RvY_07041"; transcript_id "RvY_07041.2"; Scaffold003 rebuild transcript 1767253 1767720 . - . gene_id "RvY_07042"; transcript_id "RvY_07042.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1767253 1767720 . - . gene_id "RvY_07042"; transcript_id "RvY_07042.1"; Scaffold003 rebuild transcript 1770761 1772503 . + . gene_id "RvY_07043"; transcript_id "RvY_07043.1"; gene_name "UBE2J1"; annotation "putative Ubiquitin carrier protein E2 32"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the Scaffold003 rebuild exon 1770761 1770950 . + . gene_id "RvY_07043"; transcript_id "RvY_07043.1"; Scaffold003 rebuild exon 1771170 1771340 . + . gene_id "RvY_07043"; transcript_id "RvY_07043.1"; Scaffold003 rebuild exon 1771418 1771696 . + . gene_id "RvY_07043"; transcript_id "RvY_07043.1"; Scaffold003 rebuild exon 1771758 1772503 . + . gene_id "RvY_07043"; transcript_id "RvY_07043.1"; Scaffold003 rebuild transcript 1772874 1774746 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1772874 1772942 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1773049 1773326 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1773400 1773501 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1773588 1773703 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1773801 1773874 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1773945 1774001 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1774106 1774228 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1774297 1774573 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild exon 1774634 1774746 . - . gene_id "RvY_07044"; transcript_id "RvY_07044.1"; Scaffold003 rebuild transcript 1775277 1776394 . - . gene_id "RvY_07045"; transcript_id "RvY_07045.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1775277 1775950 . - . gene_id "RvY_07045"; transcript_id "RvY_07045.1"; Scaffold003 rebuild exon 1775998 1776394 . - . gene_id "RvY_07045"; transcript_id "RvY_07045.1"; Scaffold003 rebuild transcript 1776457 1776753 . - . gene_id "RvY_07046"; transcript_id "RvY_07046.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1776457 1776680 . - . gene_id "RvY_07046"; transcript_id "RvY_07046.1"; Scaffold003 rebuild exon 1776738 1776753 . - . gene_id "RvY_07046"; transcript_id "RvY_07046.1"; Scaffold003 rebuild transcript 1776775 1776954 . - . gene_id "RvY_07047"; transcript_id "RvY_07047.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1776775 1776954 . - . gene_id "RvY_07047"; transcript_id "RvY_07047.1"; Scaffold003 rebuild transcript 1776991 1777690 . - . gene_id "RvY_07048"; transcript_id "RvY_07048.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1776991 1777377 . - . gene_id "RvY_07048"; transcript_id "RvY_07048.1"; Scaffold003 rebuild exon 1777586 1777690 . - . gene_id "RvY_07048"; transcript_id "RvY_07048.1"; Scaffold003 rebuild transcript 1780033 1781262 . + . gene_id "RvY_07049"; transcript_id "RvY_07049.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1780033 1780408 . + . gene_id "RvY_07049"; transcript_id "RvY_07049.1"; Scaffold003 rebuild exon 1780466 1781262 . + . gene_id "RvY_07049"; transcript_id "RvY_07049.1"; Scaffold003 rebuild transcript 1781925 1782624 . + . gene_id "RvY_07050"; transcript_id "RvY_07050.1"; gene_name "ssb"; annotation "single-strand DNA-binding protein"; Pfam "[SSB] Single-strand binding protein family"; CDD "Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA."; KO "K03111"; similar_genes "SSBP_DROME(e-value:2.6e-07;bit-score:53.0)"; Scaffold003 rebuild exon 1781925 1782113 . + . gene_id "RvY_07050"; transcript_id "RvY_07050.1"; Scaffold003 rebuild exon 1782175 1782624 . + . gene_id "RvY_07050"; transcript_id "RvY_07050.1"; Scaffold003 rebuild transcript 1782888 1783395 . - . gene_id "RvY_07051"; transcript_id "RvY_07051.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1782888 1783214 . - . gene_id "RvY_07051"; transcript_id "RvY_07051.1"; Scaffold003 rebuild exon 1783285 1783395 . - . gene_id "RvY_07051"; transcript_id "RvY_07051.1"; Scaffold003 rebuild transcript 1783854 1785275 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; gene_name "RAB2A"; annotation "Ras-related protein Rab-2A"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; CDD "Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07877"; similar_genes "RAB2A_MOUSE(e-value:2.1e-100;bit-score:363.0)"; Scaffold003 rebuild exon 1783854 1783899 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; Scaffold003 rebuild exon 1784185 1784256 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; Scaffold003 rebuild exon 1784416 1784566 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; Scaffold003 rebuild exon 1784692 1784896 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; Scaffold003 rebuild exon 1785031 1785099 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; Scaffold003 rebuild exon 1785168 1785275 . + . gene_id "RvY_07052"; transcript_id "RvY_07052.1"; Scaffold003 rebuild transcript 1786825 1791961 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; gene_name "RBL"; annotation "retinoblastoma-like"; Pfam "[DUF3452]|(1)[RB_B] Retinoblastoma-associated protein B domain|[RB_A] Retinoblastoma-associated protein A domain"; KO "K04681"; Scaffold003 rebuild exon 1786825 1786980 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1787233 1787348 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1787430 1787648 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1787726 1787928 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1788185 1788407 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1788469 1788691 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1788754 1788944 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1789157 1789379 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1789454 1789536 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1789592 1789863 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1790108 1790310 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1790520 1790714 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1790803 1790883 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1790958 1791182 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1791279 1791449 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild exon 1791719 1791961 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.1"; Scaffold003 rebuild transcript 1786825 1789964 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; gene_name "RBL"; annotation "retinoblastoma-like"; Pfam "[DUF3452]|(1)[RB_B] Retinoblastoma-associated protein B domain|[RB_A] Retinoblastoma-associated protein A domain"; KO "K04681"; Scaffold003 rebuild exon 1786825 1786980 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1787233 1787348 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1787430 1787648 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1787726 1787928 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1788185 1788407 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1788469 1788691 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1788754 1788944 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1789157 1789379 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1789454 1789536 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild exon 1789592 1789964 . + . gene_id "RvY_07053"; transcript_id "RvY_07053.2"; Scaffold003 rebuild transcript 1793060 1793634 . + . gene_id "RvY_07054"; transcript_id "RvY_07054.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1793060 1793278 . + . gene_id "RvY_07054"; transcript_id "RvY_07054.1"; Scaffold003 rebuild exon 1793362 1793634 . + . gene_id "RvY_07054"; transcript_id "RvY_07054.1"; Scaffold003 rebuild transcript 1793832 1794569 . + . gene_id "RvY_07055"; transcript_id "RvY_07055.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1793832 1794000 . + . gene_id "RvY_07055"; transcript_id "RvY_07055.1"; Scaffold003 rebuild exon 1794167 1794303 . + . gene_id "RvY_07055"; transcript_id "RvY_07055.1"; Scaffold003 rebuild exon 1794402 1794569 . + . gene_id "RvY_07055"; transcript_id "RvY_07055.1"; Scaffold003 rebuild transcript 1794860 1795129 . + . gene_id "RvY_07056"; transcript_id "RvY_07056.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1794860 1795129 . + . gene_id "RvY_07056"; transcript_id "RvY_07056.1"; Scaffold003 rebuild transcript 1795879 1798714 . + . gene_id "RvY_07057"; transcript_id "RvY_07057.1"; gene_name "CNOT6"; annotation "putative CCR4-NOT transcription complex subunit 6-like"; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]"; EC "EC3.1.-.-"; KO "K12603"; similar_genes "CNO6L_HUMAN(e-value:2.1e-34;bit-score:143.0)"; Scaffold003 rebuild exon 1795879 1796182 . + . gene_id "RvY_07057"; transcript_id "RvY_07057.1"; Scaffold003 rebuild exon 1796532 1796795 . + . gene_id "RvY_07057"; transcript_id "RvY_07057.1"; Scaffold003 rebuild exon 1796884 1797456 . + . gene_id "RvY_07057"; transcript_id "RvY_07057.1"; Scaffold003 rebuild exon 1797692 1798094 . + . gene_id "RvY_07057"; transcript_id "RvY_07057.1"; Scaffold003 rebuild exon 1798267 1798714 . + . gene_id "RvY_07057"; transcript_id "RvY_07057.1"; Scaffold003 rebuild transcript 1799512 1800707 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.1"; annotation "hypothetical protein."; Pfam "[C6_DPF] Cysteine-rich domain"; Scaffold003 rebuild exon 1799512 1799580 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.1"; Scaffold003 rebuild exon 1799744 1799876 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.1"; Scaffold003 rebuild exon 1800445 1800707 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.1"; Scaffold003 rebuild transcript 1799238 1799826 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.2"; annotation "hypothetical protein."; Pfam "[C6_DPF] Cysteine-rich domain"; Scaffold003 rebuild exon 1799238 1799580 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.2"; Scaffold003 rebuild exon 1799744 1799826 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.2"; Scaffold003 rebuild transcript 1800668 1801180 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.3"; annotation "hypothetical protein."; Pfam "[C6_DPF] Cysteine-rich domain"; Scaffold003 rebuild exon 1800668 1800926 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.3"; Scaffold003 rebuild exon 1801032 1801180 . - . gene_id "RvY_07058"; transcript_id "RvY_07058.3"; Scaffold003 rebuild transcript 1801878 1802888 . + . gene_id "RvY_07059"; transcript_id "RvY_07059.1"; gene_name "FAM50"; annotation "Protein FAM50A-A"; Pfam "[XAP5] XAP5, circadian clock regulator"; KO "K13119"; similar_genes "F50AA_XENLA(e-value:9.7e-73;bit-score:271.0)"; Scaffold003 rebuild exon 1801878 1802888 . + . gene_id "RvY_07059"; transcript_id "RvY_07059.1"; Scaffold003 rebuild transcript 1803748 1803972 . + . gene_id "RvY_07060"; transcript_id "RvY_07060.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1803748 1803972 . + . gene_id "RvY_07060"; transcript_id "RvY_07060.1"; Scaffold003 rebuild transcript 1804109 1804719 . - . gene_id "RvY_07061"; transcript_id "RvY_07061.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1804109 1804309 . - . gene_id "RvY_07061"; transcript_id "RvY_07061.1"; Scaffold003 rebuild exon 1804516 1804719 . - . gene_id "RvY_07061"; transcript_id "RvY_07061.1"; Scaffold003 rebuild transcript 1805709 1806020 . + . gene_id "RvY_07062"; transcript_id "RvY_07062.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1805709 1806020 . + . gene_id "RvY_07062"; transcript_id "RvY_07062.1"; Scaffold003 rebuild transcript 1805501 1805800 . + . gene_id "RvY_07062"; transcript_id "RvY_07062.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1805501 1805800 . + . gene_id "RvY_07062"; transcript_id "RvY_07062.2"; Scaffold003 rebuild transcript 1805510 1805812 . - . gene_id "RvY_07063"; transcript_id "RvY_07063.1"; gene_name "LSM5"; annotation "putative U6 snRNA-associated Sm-like protein LSm5"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K12624"; similar_genes "LSM5_MOUSE(e-value:3.6e-32;bit-score:136.0)"; Scaffold003 rebuild exon 1805510 1805812 . - . gene_id "RvY_07063"; transcript_id "RvY_07063.1"; Scaffold003 rebuild transcript 1806995 1809567 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; annotation "putative Protein VAC14 homolog"; Pfam "[Vac14_Fig4_bd] Vacuolar protein 14 C-terminal Fig4p binding|[HEAT_2] HEAT repeats|[Cnd1] non-SMC mitotic condensation complex subunit 1|[HEAT_EZ] HEAT-like repeat|[Vac14_Fab1_bd] Vacuolar 14 Fab1-binding region|[HEAT] HEAT repeat"; KO "K15305"; similar_genes "VAC14_HUMAN(e-value:4.8e-34;bit-score:142.0)"; Scaffold003 rebuild exon 1806995 1807147 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1807212 1807382 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1807448 1807664 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1807719 1807856 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1807939 1808026 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1808111 1808233 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1808328 1808449 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1808512 1809021 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild exon 1809254 1809567 . + . gene_id "RvY_07064"; transcript_id "RvY_07064.1"; Scaffold003 rebuild transcript 1810140 1816555 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; gene_name "PRK08661"; annotation "Bifunctional aminoacyl-tRNA synthetase"; Pfam "[ProRS-C_1] Prolyl-tRNA synthetase, C-terminal|[tRNA-synt_1c_C] tRNA synthetases class I (E and Q), anti-codon binding domain|[tRNA-synt_2b] tRNA synthetase class II core domain (G, H, P, S and T)|[GST_C] Glutathione S-transferase, C-terminal domain|[HGTP_anticodon] Anticodon binding domain|[tRNA-synt_1c] tRNA synthetases class I (E and Q), catalytic domain"; CDD "prolyl-tRNA synthetase; Provisional"; EC "EC6.1.1.17"; KO "K14163"; similar_genes "SYEP_DROME(e-value:5.2e-150;bit-score:527.0)"; Scaffold003 rebuild exon 1810140 1810194 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1810265 1810349 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1810417 1810519 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1810587 1810755 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1810824 1811197 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1811464 1811644 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1811719 1811890 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1812139 1812372 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1812460 1812544 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1812696 1813073 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1813341 1813671 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1813758 1814111 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1814317 1814636 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1814718 1814870 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1814955 1815212 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1815507 1815701 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1815768 1816105 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1816163 1816309 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild exon 1816396 1816555 . + . gene_id "RvY_07065"; transcript_id "RvY_07065.1"; Scaffold003 rebuild transcript 1817036 1817476 . - . gene_id "RvY_07066"; transcript_id "RvY_07066.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1817036 1817199 . - . gene_id "RvY_07066"; transcript_id "RvY_07066.1"; Scaffold003 rebuild exon 1817284 1817383 . - . gene_id "RvY_07066"; transcript_id "RvY_07066.1"; Scaffold003 rebuild exon 1817474 1817476 . - . gene_id "RvY_07066"; transcript_id "RvY_07066.1"; Scaffold003 rebuild transcript 1817948 1818172 . + . gene_id "RvY_07067"; transcript_id "RvY_07067.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1817948 1818172 . + . gene_id "RvY_07067"; transcript_id "RvY_07067.1"; Scaffold003 rebuild transcript 1818333 1819032 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.1"; annotation "hypothetical protein."; Pfam "[BLOC1_2] Biogenesis of lysosome-related organelles complex-1 subunit 2"; Scaffold003 rebuild exon 1818333 1818472 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.1"; Scaffold003 rebuild exon 1818558 1818677 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.1"; Scaffold003 rebuild exon 1818852 1819032 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.1"; Scaffold003 rebuild transcript 1818260 1819032 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.2"; annotation "hypothetical protein."; Pfam "[BLOC1_2] Biogenesis of lysosome-related organelles complex-1 subunit 2"; Scaffold003 rebuild exon 1818260 1818291 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.2"; Scaffold003 rebuild exon 1818368 1818472 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.2"; Scaffold003 rebuild exon 1818558 1818677 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.2"; Scaffold003 rebuild exon 1818852 1819032 . - . gene_id "RvY_07068"; transcript_id "RvY_07068.2"; Scaffold003 rebuild transcript 1819091 1819826 . + . gene_id "RvY_07069"; transcript_id "RvY_07069.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1819091 1819208 . + . gene_id "RvY_07069"; transcript_id "RvY_07069.1"; Scaffold003 rebuild exon 1819630 1819826 . + . gene_id "RvY_07069"; transcript_id "RvY_07069.1"; Scaffold003 rebuild transcript 1820277 1824486 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; gene_name "BRD2"; annotation "putative Bromodomain-containing protein 3"; Pfam "[Bromodomain]"; CDD "Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; KO "K08871"; similar_genes "BRD3_MOUSE(e-value:1.9e-37;bit-score:153.0)"; Scaffold003 rebuild exon 1820277 1820826 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1820886 1821189 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1821429 1821783 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1821995 1822308 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1822506 1822782 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1822849 1823070 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1823302 1823588 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1823656 1823856 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild exon 1824108 1824486 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.1"; Scaffold003 rebuild transcript 1820277 1824486 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; gene_name "BRD2"; annotation "putative Bromodomain-containing protein 3"; Pfam "[Bromodomain]"; CDD "Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; KO "K08871"; similar_genes "BRD3_MOUSE(e-value:1.9e-37;bit-score:153.0)"; Scaffold003 rebuild exon 1820277 1820826 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1820886 1821189 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1821429 1821708 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1821995 1822308 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1822506 1822782 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1822849 1823070 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1823302 1823588 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1823656 1823856 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild exon 1824108 1824486 . + . gene_id "RvY_07070"; transcript_id "RvY_07070.2"; Scaffold003 rebuild transcript 1824974 1826918 . - . gene_id "RvY_07071"; transcript_id "RvY_07071.1"; gene_name "PSMC2"; annotation "26S protease regulatory subunit 7"; Pfam "[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]"; KO "K03061"; similar_genes "PRS7_ORYSJ(e-value:6.7e-182;bit-score:633.0)"; Scaffold003 rebuild exon 1824974 1825393 . - . gene_id "RvY_07071"; transcript_id "RvY_07071.1"; Scaffold003 rebuild exon 1825669 1825952 . - . gene_id "RvY_07071"; transcript_id "RvY_07071.1"; Scaffold003 rebuild exon 1826015 1826330 . - . gene_id "RvY_07071"; transcript_id "RvY_07071.1"; Scaffold003 rebuild exon 1826631 1826918 . - . gene_id "RvY_07071"; transcript_id "RvY_07071.1"; Scaffold003 rebuild transcript 1828698 1830843 . - . gene_id "RvY_07072"; transcript_id "RvY_07072.1"; annotation "hypothetical protein."; similar_genes "Y6864_DICDI(e-value:4.0e-10;bit-score:63.0)"; Scaffold003 rebuild exon 1828698 1829038 . - . gene_id "RvY_07072"; transcript_id "RvY_07072.1"; Scaffold003 rebuild exon 1829183 1829359 . - . gene_id "RvY_07072"; transcript_id "RvY_07072.1"; Scaffold003 rebuild exon 1829426 1830083 . - . gene_id "RvY_07072"; transcript_id "RvY_07072.1"; Scaffold003 rebuild exon 1830358 1830843 . - . gene_id "RvY_07072"; transcript_id "RvY_07072.1"; Scaffold003 rebuild transcript 1832288 1836420 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1832288 1832499 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1832565 1832678 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1832738 1833119 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1833188 1833262 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1833470 1833839 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1834173 1834607 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1834793 1834936 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1835032 1835211 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1835295 1835378 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1835447 1835576 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1835639 1835790 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1835849 1835977 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1836049 1836137 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1836210 1836278 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild exon 1836343 1836420 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.1"; Scaffold003 rebuild transcript 1832288 1836284 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1832288 1832499 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1832565 1832678 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1832738 1833119 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1833188 1833262 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1833470 1833839 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1834173 1834607 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1834793 1834936 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1835032 1835211 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1835295 1835378 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1835447 1835576 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1835639 1835790 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1835849 1835977 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1836049 1836137 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild exon 1836210 1836284 . + . gene_id "RvY_07073"; transcript_id "RvY_07073.2"; Scaffold003 rebuild transcript 1836897 1838154 . - . gene_id "RvY_07074"; transcript_id "RvY_07074.1"; gene_name "eIF-6"; annotation "Eukaryotic translation initiation factor 6"; Pfam "[eIF-6] eIF-6 family"; CDD "eukaryotic translation initiation factor 6; Provisional"; KO "K03264"; similar_genes "IF6_MOUSE(e-value:1.1e-101;bit-score:367.0)"; Scaffold003 rebuild exon 1836897 1837091 . - . gene_id "RvY_07074"; transcript_id "RvY_07074.1"; Scaffold003 rebuild exon 1837272 1837448 . - . gene_id "RvY_07074"; transcript_id "RvY_07074.1"; Scaffold003 rebuild exon 1837513 1837688 . - . gene_id "RvY_07074"; transcript_id "RvY_07074.1"; Scaffold003 rebuild exon 1837818 1837903 . - . gene_id "RvY_07074"; transcript_id "RvY_07074.1"; Scaffold003 rebuild exon 1838048 1838154 . - . gene_id "RvY_07074"; transcript_id "RvY_07074.1"; Scaffold003 rebuild transcript 1838814 1839531 . + . gene_id "RvY_07075"; transcript_id "RvY_07075.1"; gene_name "apt"; annotation "putative Adenine phosphoribosyltransferase"; Pfam "[Pribosyltran] Phosphoribosyl transferase domain"; CDD "adenine phosphoribosyltransferase; Provisional"; EC "EC2.4.2.7"; KO "K00759"; similar_genes "APT_ACIBL(e-value:1.0e-25;bit-score:115.0)"; Scaffold003 rebuild exon 1838814 1838902 . + . gene_id "RvY_07075"; transcript_id "RvY_07075.1"; Scaffold003 rebuild exon 1839010 1839250 . + . gene_id "RvY_07075"; transcript_id "RvY_07075.1"; Scaffold003 rebuild exon 1839313 1839531 . + . gene_id "RvY_07075"; transcript_id "RvY_07075.1"; Scaffold003 rebuild transcript 1840304 1842168 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15112"; Scaffold003 rebuild exon 1840304 1840565 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1840650 1840775 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1840838 1840900 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1840972 1841056 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1841123 1841245 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1841320 1841432 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1841493 1841621 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1841690 1841738 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1841830 1841922 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1841999 1842035 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild exon 1842094 1842168 . + . gene_id "RvY_07076"; transcript_id "RvY_07076.1"; Scaffold003 rebuild transcript 1843484 1844254 . - . gene_id "RvY_07077"; transcript_id "RvY_07077.1"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold003 rebuild exon 1843484 1844042 . - . gene_id "RvY_07077"; transcript_id "RvY_07077.1"; Scaffold003 rebuild exon 1844124 1844254 . - . gene_id "RvY_07077"; transcript_id "RvY_07077.1"; Scaffold003 rebuild transcript 1844790 1858700 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; gene_name "EDD1"; annotation "putative E3 ubiquitin-protein ligase UBR5"; Pfam "[zf-UBR] Putative zinc finger in N-recognin (UBR box)|[E3_UbLigase_EDD] E3 ubiquitin ligase EDD|[HECT] HECT-domain (ubiquitin-transferase)"; CDD "Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10593"; similar_genes "UBR5_HUMAN(e-value:6.6e-40;bit-score:162.0)"; Scaffold003 rebuild exon 1844790 1844888 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1844952 1845065 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1845253 1845486 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1845567 1845692 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1845753 1845981 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1846157 1846527 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1847487 1847846 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1848009 1848185 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1848249 1848462 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1848695 1849119 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1849416 1849699 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1849858 1850086 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1850255 1850481 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1850672 1850906 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1850976 1851106 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1851172 1851460 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1851522 1851876 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1852162 1852549 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1852613 1852710 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1852784 1853039 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1853259 1853521 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1853739 1854108 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1854222 1854621 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1854898 1855293 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1855380 1855624 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1855682 1855890 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1855997 1856154 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1856228 1856521 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1856710 1856948 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1857028 1857112 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1857185 1857244 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1857309 1857762 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1858102 1858205 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1858295 1858418 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild exon 1858588 1858700 . - . gene_id "RvY_07078"; transcript_id "RvY_07078.1"; Scaffold003 rebuild transcript 1859711 1859980 . - . gene_id "RvY_07079"; transcript_id "RvY_07079.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 1859711 1859980 . - . gene_id "RvY_07079"; transcript_id "RvY_07079.1"; Scaffold003 rebuild transcript 1864033 1864552 . + . gene_id "RvY_07080"; transcript_id "RvY_07080.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1864033 1864152 . + . gene_id "RvY_07080"; transcript_id "RvY_07080.1"; Scaffold003 rebuild exon 1864373 1864552 . + . gene_id "RvY_07080"; transcript_id "RvY_07080.1"; Scaffold003 rebuild transcript 1865313 1865599 . + . gene_id "RvY_07081"; transcript_id "RvY_07081.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1865313 1865456 . + . gene_id "RvY_07081"; transcript_id "RvY_07081.1"; Scaffold003 rebuild exon 1865567 1865599 . + . gene_id "RvY_07081"; transcript_id "RvY_07081.1"; Scaffold003 rebuild transcript 1866565 1866963 . - . gene_id "RvY_07082"; transcript_id "RvY_07082.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain"; Scaffold003 rebuild exon 1866565 1866868 . - . gene_id "RvY_07082"; transcript_id "RvY_07082.1"; Scaffold003 rebuild exon 1866950 1866963 . - . gene_id "RvY_07082"; transcript_id "RvY_07082.1"; Scaffold003 rebuild transcript 1867267 1867482 . - . gene_id "RvY_07083"; transcript_id "RvY_07083.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1867267 1867482 . - . gene_id "RvY_07083"; transcript_id "RvY_07083.1"; Scaffold003 rebuild transcript 1872664 1873311 . + . gene_id "RvY_07084"; transcript_id "RvY_07084.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 1872664 1873311 . + . gene_id "RvY_07084"; transcript_id "RvY_07084.1"; Scaffold003 rebuild transcript 1874724 1875032 . - . gene_id "RvY_07085"; transcript_id "RvY_07085.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1874724 1875032 . - . gene_id "RvY_07085"; transcript_id "RvY_07085.1"; Scaffold003 rebuild transcript 1887970 1888878 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; gene_name "RPB9"; annotation "DNA-directed RNA polymerase II subunit I"; Pfam "[TFIIS_C] Transcription factor S-II (TFIIS)|[RNA_POL_M_15KD] RNA polymerases M/15 Kd subunit"; CDD "DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]"; KO "K03017"; similar_genes "RPB9_HUMAN(e-value:8.8e-25;bit-score:111.0)"; Scaffold003 rebuild exon 1887970 1888032 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; Scaffold003 rebuild exon 1888102 1888228 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; Scaffold003 rebuild exon 1888466 1888495 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; Scaffold003 rebuild exon 1888568 1888611 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; Scaffold003 rebuild exon 1888692 1888746 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; Scaffold003 rebuild exon 1888817 1888878 . - . gene_id "RvY_07086"; transcript_id "RvY_07086.1"; Scaffold003 rebuild transcript 1889543 1890400 . - . gene_id "RvY_07087"; transcript_id "RvY_07087.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1889543 1889838 . - . gene_id "RvY_07087"; transcript_id "RvY_07087.1"; Scaffold003 rebuild exon 1889944 1890255 . - . gene_id "RvY_07087"; transcript_id "RvY_07087.1"; Scaffold003 rebuild exon 1890337 1890400 . - . gene_id "RvY_07087"; transcript_id "RvY_07087.1"; Scaffold003 rebuild transcript 1891319 1895006 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; gene_name "Vps54"; annotation "hypothetical protein."; Pfam "[DUF2450] Protein of unknown function N-terminal domain (DUF2450)|[Vps54] Vps54-like protein"; CDD "Vps54-like protein. This family contains various proteins that are homologs of the yeast Vps54 protein, such as the rat homolog , the human homolog, and the mouse homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments. All Vps54 homologs contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs."; similar_genes "VPS54_CAEEL(e-value:6.8e-10;bit-score:62.0)"; Scaffold003 rebuild exon 1891319 1891535 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; Scaffold003 rebuild exon 1891617 1892266 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; Scaffold003 rebuild exon 1892362 1892923 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; Scaffold003 rebuild exon 1893210 1893762 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; Scaffold003 rebuild exon 1894154 1894574 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; Scaffold003 rebuild exon 1894644 1895006 . + . gene_id "RvY_07088"; transcript_id "RvY_07088.1"; Scaffold003 rebuild transcript 1895143 1897028 . - . gene_id "RvY_07089"; transcript_id "RvY_07089.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1895143 1895895 . - . gene_id "RvY_07089"; transcript_id "RvY_07089.1"; Scaffold003 rebuild exon 1896030 1897028 . - . gene_id "RvY_07089"; transcript_id "RvY_07089.1"; Scaffold003 rebuild transcript 1897706 1900037 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; gene_name "RRM_2"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold003 rebuild exon 1897706 1897900 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1898183 1898275 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1898437 1898625 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1898875 1898969 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1899071 1899158 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1899258 1899419 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1899539 1899685 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild exon 1899822 1900037 . - . gene_id "RvY_07090"; transcript_id "RvY_07090.1"; Scaffold003 rebuild transcript 1901157 1902250 . + . gene_id "RvY_07091"; transcript_id "RvY_07091.1"; annotation "hypothetical protein."; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone"; Scaffold003 rebuild exon 1901157 1901321 . + . gene_id "RvY_07091"; transcript_id "RvY_07091.1"; Scaffold003 rebuild exon 1901439 1901524 . + . gene_id "RvY_07091"; transcript_id "RvY_07091.1"; Scaffold003 rebuild exon 1901643 1901761 . + . gene_id "RvY_07091"; transcript_id "RvY_07091.1"; Scaffold003 rebuild exon 1901829 1902250 . + . gene_id "RvY_07091"; transcript_id "RvY_07091.1"; Scaffold003 rebuild transcript 1902540 1903133 . - . gene_id "RvY_07092"; transcript_id "RvY_07092.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1902540 1902601 . - . gene_id "RvY_07092"; transcript_id "RvY_07092.1"; Scaffold003 rebuild exon 1902683 1902796 . - . gene_id "RvY_07092"; transcript_id "RvY_07092.1"; Scaffold003 rebuild exon 1903010 1903133 . - . gene_id "RvY_07092"; transcript_id "RvY_07092.1"; Scaffold003 rebuild transcript 1903918 1904500 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1903918 1904090 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.1"; Scaffold003 rebuild exon 1904173 1904500 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.1"; Scaffold003 rebuild transcript 1903816 1904323 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1903816 1903868 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.2"; Scaffold003 rebuild exon 1903932 1904090 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.2"; Scaffold003 rebuild exon 1904173 1904323 . - . gene_id "RvY_07093"; transcript_id "RvY_07093.2"; Scaffold003 rebuild transcript 1907590 1910734 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1907590 1907612 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1907629 1907773 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1907845 1908007 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1908266 1908674 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1908753 1908939 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1909013 1909361 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1909626 1909815 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1910192 1910270 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild exon 1910507 1910734 . - . gene_id "RvY_07094"; transcript_id "RvY_07094.1"; Scaffold003 rebuild transcript 1925854 1926162 . + . gene_id "RvY_07095"; transcript_id "RvY_07095.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1925854 1926162 . + . gene_id "RvY_07095"; transcript_id "RvY_07095.1"; Scaffold003 rebuild transcript 1927695 1928441 . - . gene_id "RvY_07096"; transcript_id "RvY_07096.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1927695 1928441 . - . gene_id "RvY_07096"; transcript_id "RvY_07096.1"; Scaffold003 rebuild transcript 1929032 1931144 . - . gene_id "RvY_07097"; transcript_id "RvY_07097.1"; gene_name "H2A"; annotation "putative Histone H2A"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone 2A."; similar_genes "H2A_MYTCA(e-value:2.5e-35;bit-score:146.0)"; Scaffold003 rebuild exon 1929032 1929241 . - . gene_id "RvY_07097"; transcript_id "RvY_07097.1"; Scaffold003 rebuild exon 1929328 1929578 . - . gene_id "RvY_07097"; transcript_id "RvY_07097.1"; Scaffold003 rebuild exon 1930844 1931144 . - . gene_id "RvY_07097"; transcript_id "RvY_07097.1"; Scaffold003 rebuild transcript 1932423 1932827 . - . gene_id "RvY_07098"; transcript_id "RvY_07098.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1932423 1932827 . - . gene_id "RvY_07098"; transcript_id "RvY_07098.1"; Scaffold003 rebuild transcript 1935014 1937095 . + . gene_id "RvY_07099"; transcript_id "RvY_07099.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1935014 1935572 . + . gene_id "RvY_07099"; transcript_id "RvY_07099.1"; Scaffold003 rebuild exon 1935699 1936196 . + . gene_id "RvY_07099"; transcript_id "RvY_07099.1"; Scaffold003 rebuild exon 1936410 1937095 . + . gene_id "RvY_07099"; transcript_id "RvY_07099.1"; Scaffold003 rebuild transcript 1938091 1939296 . - . gene_id "RvY_07100"; transcript_id "RvY_07100.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1938091 1938170 . - . gene_id "RvY_07100"; transcript_id "RvY_07100.1"; Scaffold003 rebuild exon 1939260 1939296 . - . gene_id "RvY_07100"; transcript_id "RvY_07100.1"; Scaffold003 rebuild transcript 1942714 1944912 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold003 rebuild exon 1942714 1942761 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.1"; Scaffold003 rebuild exon 1943450 1943999 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.1"; Scaffold003 rebuild exon 1944203 1944696 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.1"; Scaffold003 rebuild exon 1944838 1944912 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.1"; Scaffold003 rebuild transcript 1942714 1944702 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold003 rebuild exon 1942714 1942761 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.2"; Scaffold003 rebuild exon 1943450 1943999 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.2"; Scaffold003 rebuild exon 1944203 1944702 . + . gene_id "RvY_07101"; transcript_id "RvY_07101.2"; Scaffold003 rebuild transcript 1948995 1949684 . + . gene_id "RvY_07102"; transcript_id "RvY_07102.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1948995 1949235 . + . gene_id "RvY_07102"; transcript_id "RvY_07102.1"; Scaffold003 rebuild exon 1949413 1949684 . + . gene_id "RvY_07102"; transcript_id "RvY_07102.1"; Scaffold003 rebuild transcript 1950040 1950541 . + . gene_id "RvY_07103"; transcript_id "RvY_07103.1"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; similar_genes "(1)HG2A_RAT(e-value:2.6e-07;bit-score:53.0)"; Scaffold003 rebuild exon 1950040 1950130 . + . gene_id "RvY_07103"; transcript_id "RvY_07103.1"; Scaffold003 rebuild exon 1950300 1950541 . + . gene_id "RvY_07103"; transcript_id "RvY_07103.1"; Scaffold003 rebuild transcript 1950358 1950639 . + . gene_id "RvY_07103"; transcript_id "RvY_07103.2"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; similar_genes "(1)HG2A_RAT(e-value:2.6e-07;bit-score:53.0)"; Scaffold003 rebuild exon 1950358 1950639 . + . gene_id "RvY_07103"; transcript_id "RvY_07103.2"; Scaffold003 rebuild transcript 1952034 1953622 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.1"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; Scaffold003 rebuild exon 1952034 1952088 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.1"; Scaffold003 rebuild exon 1952737 1953095 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.1"; Scaffold003 rebuild exon 1953176 1953292 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.1"; Scaffold003 rebuild exon 1953407 1953622 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.1"; Scaffold003 rebuild transcript 1952736 1953687 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.2"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; Scaffold003 rebuild exon 1952736 1953095 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.2"; Scaffold003 rebuild exon 1953176 1953292 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.2"; Scaffold003 rebuild exon 1953407 1953483 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.2"; Scaffold003 rebuild exon 1953633 1953687 . - . gene_id "RvY_07104"; transcript_id "RvY_07104.2"; Scaffold003 rebuild transcript 1954564 1958266 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; gene_name "COG7"; annotation "hypothetical protein."; Pfam "[COG7] Golgi complex component 7 (COG7)"; CDD "Golgi complex component 7 (COG7). COG7 is a component of the conserved oligomeric Golgi complex which is required for normal Golgi morphology and localisation. Mutation in COG7 causes a congenital disorder of glycosylation."; Scaffold003 rebuild exon 1954564 1954727 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; Scaffold003 rebuild exon 1954793 1955299 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; Scaffold003 rebuild exon 1956457 1957195 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; Scaffold003 rebuild exon 1957276 1957941 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; Scaffold003 rebuild exon 1958022 1958105 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; Scaffold003 rebuild exon 1958192 1958266 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.1"; Scaffold003 rebuild transcript 1956449 1958266 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.2"; gene_name "COG7"; annotation "hypothetical protein."; Pfam "[COG7] Golgi complex component 7 (COG7)"; CDD "Golgi complex component 7 (COG7). COG7 is a component of the conserved oligomeric Golgi complex which is required for normal Golgi morphology and localisation. Mutation in COG7 causes a congenital disorder of glycosylation."; Scaffold003 rebuild exon 1956449 1957195 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.2"; Scaffold003 rebuild exon 1957276 1957941 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.2"; Scaffold003 rebuild exon 1958022 1958105 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.2"; Scaffold003 rebuild exon 1958192 1958266 . - . gene_id "RvY_07105"; transcript_id "RvY_07105.2"; Scaffold003 rebuild transcript 1960170 1961375 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; gene_name "GNA1"; annotation "glucosamine-phosphate N-acetyltransferase [EC:2.3.1.4]"; Pfam "[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "acetyltransferase; Provisional"; EC "EC2.3.1.4"; KO "K00621"; similar_genes "GNA1_PONAB(e-value:1.2e-17;bit-score:88.0)"; Scaffold003 rebuild exon 1960170 1960253 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; Scaffold003 rebuild exon 1960346 1960649 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; Scaffold003 rebuild exon 1960720 1960782 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; Scaffold003 rebuild exon 1960875 1961008 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; Scaffold003 rebuild exon 1961075 1961136 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; Scaffold003 rebuild exon 1961225 1961375 . + . gene_id "RvY_07106"; transcript_id "RvY_07106.1"; Scaffold003 rebuild transcript 1961872 1964163 . + . gene_id "RvY_07107"; transcript_id "RvY_07107.1"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold003 rebuild exon 1961872 1963107 . + . gene_id "RvY_07107"; transcript_id "RvY_07107.1"; Scaffold003 rebuild exon 1963378 1963628 . + . gene_id "RvY_07107"; transcript_id "RvY_07107.1"; Scaffold003 rebuild exon 1963705 1963828 . + . gene_id "RvY_07107"; transcript_id "RvY_07107.1"; Scaffold003 rebuild exon 1963939 1964163 . + . gene_id "RvY_07107"; transcript_id "RvY_07107.1"; Scaffold003 rebuild transcript 1964413 1966361 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.1"; gene_name "Ras_dva"; annotation "hypothetical protein."; Pfam "(1,2)[Miro] Miro-like protein|[Ras] Ras family|(1)[Arf] ADP-ribosylation factor family|(1,2)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; Scaffold003 rebuild exon 1964413 1964609 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.1"; Scaffold003 rebuild exon 1964691 1964769 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.1"; Scaffold003 rebuild exon 1965031 1965367 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.1"; Scaffold003 rebuild exon 1965696 1965741 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.1"; Scaffold003 rebuild exon 1966091 1966361 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.1"; Scaffold003 rebuild transcript 1964413 1965333 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.2"; gene_name "Ras_dva"; annotation "hypothetical protein."; Pfam "(1,2)[Miro] Miro-like protein|[Ras] Ras family|(1)[Arf] ADP-ribosylation factor family|(1,2)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; Scaffold003 rebuild exon 1964413 1964609 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.2"; Scaffold003 rebuild exon 1964691 1964769 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.2"; Scaffold003 rebuild exon 1965031 1965333 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.2"; Scaffold003 rebuild transcript 1964413 1965249 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.3"; gene_name "Ras_dva"; annotation "hypothetical protein."; Pfam "(1,2)[Miro] Miro-like protein|[Ras] Ras family|(1)[Arf] ADP-ribosylation factor family|(1,2)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; Scaffold003 rebuild exon 1964413 1964609 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.3"; Scaffold003 rebuild exon 1964691 1964769 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.3"; Scaffold003 rebuild exon 1965031 1965249 . - . gene_id "RvY_07108"; transcript_id "RvY_07108.3"; Scaffold003 rebuild transcript 1966592 1966786 . - . gene_id "RvY_07109"; transcript_id "RvY_07109.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1966592 1966786 . - . gene_id "RvY_07109"; transcript_id "RvY_07109.1"; Scaffold003 rebuild transcript 1969051 1970354 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.1"; gene_name "(1)Sumo"; annotation "hypothetical protein."; Pfam "[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "(1)Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as ""Smt3"" and ""sentrin"" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases."; Scaffold003 rebuild exon 1969051 1969149 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.1"; Scaffold003 rebuild exon 1969385 1970127 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.1"; Scaffold003 rebuild exon 1970189 1970354 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.1"; Scaffold003 rebuild transcript 1969298 1970354 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.2"; gene_name "(1)Sumo"; annotation "hypothetical protein."; Pfam "[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "(1)Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as ""Smt3"" and ""sentrin"" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases."; Scaffold003 rebuild exon 1969298 1970127 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.2"; Scaffold003 rebuild exon 1970189 1970354 . - . gene_id "RvY_07110"; transcript_id "RvY_07110.2"; Scaffold003 rebuild transcript 1971202 1973709 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; gene_name "EME1"; annotation "crossover junction endonuclease EME1 [EC:3.1.22.-]"; EC "EC3.1.22.-"; KO "K10882"; Scaffold003 rebuild exon 1971202 1971709 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1971812 1972185 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1972343 1972534 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1972603 1972695 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1972789 1972913 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1973002 1973113 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1973181 1973296 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild exon 1973352 1973709 . + . gene_id "RvY_07111"; transcript_id "RvY_07111.1"; Scaffold003 rebuild transcript 1974189 1976570 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; annotation "hypothetical protein."; Pfam "[DUF773]"; similar_genes "CK5P3_CAEEL(e-value:8.7e-06;bit-score:48.0)"; Scaffold003 rebuild exon 1974189 1974246 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1974347 1974502 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1974630 1974782 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1974948 1975126 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1975210 1975346 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1975413 1975777 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1975990 1976260 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild exon 1976318 1976570 . + . gene_id "RvY_07112"; transcript_id "RvY_07112.1"; Scaffold003 rebuild transcript 1977120 1978493 . + . gene_id "RvY_07113"; transcript_id "RvY_07113.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1977120 1977192 . + . gene_id "RvY_07113"; transcript_id "RvY_07113.1"; Scaffold003 rebuild exon 1977370 1978493 . + . gene_id "RvY_07113"; transcript_id "RvY_07113.1"; Scaffold003 rebuild transcript 1979305 1979478 . - . gene_id "RvY_07114"; transcript_id "RvY_07114.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1979305 1979478 . - . gene_id "RvY_07114"; transcript_id "RvY_07114.1"; Scaffold003 rebuild transcript 1980292 1989507 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; gene_name "SH2"; annotation "hypothetical protein."; Pfam "[SH2]"; CDD "Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae."; Scaffold003 rebuild exon 1980292 1980452 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1980516 1980732 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1980943 1981115 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1981213 1981866 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1982066 1982710 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1983102 1983292 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1983958 1984321 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1987613 1987710 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1988349 1988824 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild exon 1989277 1989507 . - . gene_id "RvY_07115"; transcript_id "RvY_07115.1"; Scaffold003 rebuild transcript 1993646 1995483 . - . gene_id "RvY_07116"; transcript_id "RvY_07116.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1993646 1994199 . - . gene_id "RvY_07116"; transcript_id "RvY_07116.1"; Scaffold003 rebuild exon 1995295 1995394 . - . gene_id "RvY_07116"; transcript_id "RvY_07116.1"; Scaffold003 rebuild exon 1995457 1995483 . - . gene_id "RvY_07116"; transcript_id "RvY_07116.1"; Scaffold003 rebuild transcript 1996438 1997846 . - . gene_id "RvY_07117"; transcript_id "RvY_07117.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 1996438 1996682 . - . gene_id "RvY_07117"; transcript_id "RvY_07117.1"; Scaffold003 rebuild exon 1997656 1997767 . - . gene_id "RvY_07117"; transcript_id "RvY_07117.1"; Scaffold003 rebuild exon 1997835 1997846 . - . gene_id "RvY_07117"; transcript_id "RvY_07117.1"; Scaffold003 rebuild transcript 1998607 2000054 . - . gene_id "RvY_07118"; transcript_id "RvY_07118.1"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; EC "EC1.1.1.-"; similar_genes "AK1CL_MOUSE(e-value:4.6e-11;bit-score:66.0)"; Scaffold003 rebuild exon 1998607 1998972 . - . gene_id "RvY_07118"; transcript_id "RvY_07118.1"; Scaffold003 rebuild exon 1999333 1999545 . - . gene_id "RvY_07118"; transcript_id "RvY_07118.1"; Scaffold003 rebuild exon 1999965 2000054 . - . gene_id "RvY_07118"; transcript_id "RvY_07118.1"; Scaffold003 rebuild transcript 2000489 2001734 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.1"; gene_name "(2)K00085"; annotation "(1)hypothetical protein.(2)aldose-6-phosphate reductase (NADPH2) [EC:1.1.1.200]"; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; EC "(1)EC1.1.1.2(2)EC1.1.1.2|EC1.1.1.200"; KO "(2)K00085"; similar_genes "A1A1B_DANRE(e-value:9.4e-16;bit-score:81.0)"; Scaffold003 rebuild exon 2000489 2000537 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.1"; Scaffold003 rebuild exon 2000600 2000961 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.1"; Scaffold003 rebuild exon 2001059 2001460 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.1"; Scaffold003 rebuild exon 2001528 2001734 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.1"; Scaffold003 rebuild transcript 2000489 2001850 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; gene_name "(2)K00085"; annotation "(1)hypothetical protein.(2)aldose-6-phosphate reductase (NADPH2) [EC:1.1.1.200]"; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; EC "(1)EC1.1.1.2(2)EC1.1.1.2|EC1.1.1.200"; KO "(2)K00085"; similar_genes "A1A1B_DANRE(e-value:9.4e-16;bit-score:81.0)"; Scaffold003 rebuild exon 2000489 2000537 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; Scaffold003 rebuild exon 2000600 2000961 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; Scaffold003 rebuild exon 2001059 2001175 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; Scaffold003 rebuild exon 2001245 2001460 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; Scaffold003 rebuild exon 2001528 2001704 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; Scaffold003 rebuild exon 2001773 2001850 . - . gene_id "RvY_07119"; transcript_id "RvY_07119.2"; Scaffold003 rebuild transcript 2002376 2003455 . - . gene_id "RvY_07120"; transcript_id "RvY_07120.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2002376 2002495 . - . gene_id "RvY_07120"; transcript_id "RvY_07120.1"; Scaffold003 rebuild exon 2002561 2002686 . - . gene_id "RvY_07120"; transcript_id "RvY_07120.1"; Scaffold003 rebuild exon 2002908 2003121 . - . gene_id "RvY_07120"; transcript_id "RvY_07120.1"; Scaffold003 rebuild exon 2003224 2003323 . - . gene_id "RvY_07120"; transcript_id "RvY_07120.1"; Scaffold003 rebuild exon 2003398 2003455 . - . gene_id "RvY_07120"; transcript_id "RvY_07120.1"; Scaffold003 rebuild transcript 2004116 2006565 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2004116 2004376 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2004504 2004565 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2004623 2004728 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2004802 2004988 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2005047 2005309 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2005373 2005528 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2005601 2005673 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2005764 2005896 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2005976 2006127 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild exon 2006216 2006565 . + . gene_id "RvY_07121"; transcript_id "RvY_07121.1"; Scaffold003 rebuild transcript 2006570 2007016 . + . gene_id "RvY_07122"; transcript_id "RvY_07122.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2006570 2007016 . + . gene_id "RvY_07122"; transcript_id "RvY_07122.1"; Scaffold003 rebuild transcript 2006570 2007016 . + . gene_id "RvY_07122"; transcript_id "RvY_07122.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2006570 2006750 . + . gene_id "RvY_07122"; transcript_id "RvY_07122.2"; Scaffold003 rebuild exon 2006814 2007016 . + . gene_id "RvY_07122"; transcript_id "RvY_07122.2"; Scaffold003 rebuild transcript 2007222 2007981 . + . gene_id "RvY_07123"; transcript_id "RvY_07123.1"; gene_name "pfdA"; annotation "prefoldin alpha subunit"; Pfam "[Prefoldin] Prefoldin subunit"; CDD "Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils."; KO "K04797"; Scaffold003 rebuild exon 2007222 2007299 . + . gene_id "RvY_07123"; transcript_id "RvY_07123.1"; Scaffold003 rebuild exon 2007360 2007494 . + . gene_id "RvY_07123"; transcript_id "RvY_07123.1"; Scaffold003 rebuild exon 2007571 2007645 . + . gene_id "RvY_07123"; transcript_id "RvY_07123.1"; Scaffold003 rebuild exon 2007707 2007812 . + . gene_id "RvY_07123"; transcript_id "RvY_07123.1"; Scaffold003 rebuild exon 2007896 2007981 . + . gene_id "RvY_07123"; transcript_id "RvY_07123.1"; Scaffold003 rebuild transcript 2009054 2009260 . - . gene_id "RvY_07124"; transcript_id "RvY_07124.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2009054 2009260 . - . gene_id "RvY_07124"; transcript_id "RvY_07124.1"; Scaffold003 rebuild transcript 2009284 2009816 . - . gene_id "RvY_07125"; transcript_id "RvY_07125.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2009284 2009543 . - . gene_id "RvY_07125"; transcript_id "RvY_07125.1"; Scaffold003 rebuild exon 2009750 2009816 . - . gene_id "RvY_07125"; transcript_id "RvY_07125.1"; Scaffold003 rebuild transcript 2010537 2011948 . - . gene_id "RvY_07126"; transcript_id "RvY_07126.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2010537 2010818 . - . gene_id "RvY_07126"; transcript_id "RvY_07126.1"; Scaffold003 rebuild exon 2010862 2011037 . - . gene_id "RvY_07126"; transcript_id "RvY_07126.1"; Scaffold003 rebuild exon 2011105 2011239 . - . gene_id "RvY_07126"; transcript_id "RvY_07126.1"; Scaffold003 rebuild exon 2011858 2011948 . - . gene_id "RvY_07126"; transcript_id "RvY_07126.1"; Scaffold003 rebuild transcript 2013461 2013943 . - . gene_id "RvY_07127"; transcript_id "RvY_07127.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2013461 2013943 . - . gene_id "RvY_07127"; transcript_id "RvY_07127.1"; Scaffold003 rebuild transcript 2016371 2025033 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; annotation "hypothetical protein."; Pfam "[FYRN] F/Y-rich N-terminus"; Scaffold003 rebuild exon 2016371 2016697 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2016758 2016790 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2017271 2017426 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2017541 2017801 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2018018 2018255 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2018380 2018667 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2018798 2018969 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2019229 2019553 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2019622 2019751 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2019814 2019998 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2020073 2020222 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2020512 2020780 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2020854 2020987 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2021258 2021662 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2021801 2021989 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2022091 2022177 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2022397 2023206 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2023449 2023718 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2023987 2024305 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2024385 2024469 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2024556 2024651 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2024780 2024853 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild exon 2024922 2025033 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.1"; Scaffold003 rebuild transcript 2016371 2021034 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; annotation "hypothetical protein."; Pfam "[FYRN] F/Y-rich N-terminus"; Scaffold003 rebuild exon 2016371 2016697 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2016758 2016790 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2017271 2017426 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2017541 2017801 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2018018 2018255 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2018380 2018667 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2018798 2018969 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2019229 2019553 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2019622 2019751 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2019814 2019998 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2020073 2020222 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2020512 2020780 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild exon 2020854 2021034 . + . gene_id "RvY_07128"; transcript_id "RvY_07128.2"; Scaffold003 rebuild transcript 2026046 2026459 . + . gene_id "RvY_07129"; transcript_id "RvY_07129.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2026046 2026459 . + . gene_id "RvY_07129"; transcript_id "RvY_07129.1"; Scaffold003 rebuild transcript 2036210 2039627 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold003 rebuild exon 2036210 2036475 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; Scaffold003 rebuild exon 2036672 2036969 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; Scaffold003 rebuild exon 2037201 2037269 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; Scaffold003 rebuild exon 2037510 2038115 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; Scaffold003 rebuild exon 2038538 2038742 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; Scaffold003 rebuild exon 2039167 2039627 . + . gene_id "RvY_07130"; transcript_id "RvY_07130.1"; Scaffold003 rebuild transcript 2040405 2041428 . - . gene_id "RvY_07131"; transcript_id "RvY_07131.1"; gene_name "RAB"; annotation "Ras-related protein Rab-5B"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; CDD "Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07976"; similar_genes "RAB5B_HUMAN(e-value:3.7e-70;bit-score:262.0)"; Scaffold003 rebuild exon 2040405 2040964 . - . gene_id "RvY_07131"; transcript_id "RvY_07131.1"; Scaffold003 rebuild exon 2041317 2041428 . - . gene_id "RvY_07131"; transcript_id "RvY_07131.1"; Scaffold003 rebuild transcript 2041869 2042362 . + . gene_id "RvY_07132"; transcript_id "RvY_07132.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2041869 2041982 . + . gene_id "RvY_07132"; transcript_id "RvY_07132.1"; Scaffold003 rebuild exon 2042246 2042362 . + . gene_id "RvY_07132"; transcript_id "RvY_07132.1"; Scaffold003 rebuild transcript 2043082 2047706 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; gene_name "COG5406"; annotation "FACT complex subunit spt16"; Pfam "[Rtt106] Histone chaperone Rttp106-like|[SPT16] FACT complex subunit (SPT16/CDC68)|[Peptidase_M24] Metallopeptidase family M24"; CDD "Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]"; similar_genes "SPT16_DROME(e-value:5.9e-149;bit-score:524.0)"; Scaffold003 rebuild exon 2043082 2043185 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2043256 2043478 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2043561 2043698 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2043770 2044117 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2044185 2044310 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2044509 2044711 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2044775 2045135 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2045358 2045753 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2045834 2046020 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2046118 2046381 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2046602 2046753 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2046852 2047091 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2047160 2047387 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2047479 2047577 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild exon 2047638 2047706 . - . gene_id "RvY_07133"; transcript_id "RvY_07133.1"; Scaffold003 rebuild transcript 2048912 2049444 . + . gene_id "RvY_07134"; transcript_id "RvY_07134.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2048912 2048978 . + . gene_id "RvY_07134"; transcript_id "RvY_07134.1"; Scaffold003 rebuild exon 2049185 2049444 . + . gene_id "RvY_07134"; transcript_id "RvY_07134.1"; Scaffold003 rebuild transcript 2049468 2049674 . + . gene_id "RvY_07135"; transcript_id "RvY_07135.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2049468 2049674 . + . gene_id "RvY_07135"; transcript_id "RvY_07135.1"; Scaffold003 rebuild transcript 2050058 2054024 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 2050058 2050193 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2050276 2050439 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2050519 2050652 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2050717 2050790 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2050891 2050949 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2051037 2051106 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2051176 2051237 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2051330 2051438 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2051510 2051789 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2051855 2051984 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2052209 2052316 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2052384 2052524 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2052579 2052698 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2052785 2052877 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2052955 2053014 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2053080 2053151 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2053237 2053404 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2053516 2053614 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2053701 2053763 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild exon 2053836 2054024 . + . gene_id "RvY_07136"; transcript_id "RvY_07136.1"; Scaffold003 rebuild transcript 2055237 2057481 . + . gene_id "RvY_07137"; transcript_id "RvY_07137.1"; gene_name "IRK"; annotation "hypothetical protein."; Pfam "[IRK] Inward rectifier potassium channel"; CDD "Inward rectifier potassium channel."; similar_genes "IRK14_HUMAN(e-value:4.1e-14;bit-score:76.0)"; Scaffold003 rebuild exon 2055237 2055804 . + . gene_id "RvY_07137"; transcript_id "RvY_07137.1"; Scaffold003 rebuild exon 2056200 2056679 . + . gene_id "RvY_07137"; transcript_id "RvY_07137.1"; Scaffold003 rebuild exon 2056820 2057481 . + . gene_id "RvY_07137"; transcript_id "RvY_07137.1"; Scaffold003 rebuild transcript 2059378 2061453 . + . gene_id "RvY_07138"; transcript_id "RvY_07138.1"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)"; Scaffold003 rebuild exon 2059378 2059497 . + . gene_id "RvY_07138"; transcript_id "RvY_07138.1"; Scaffold003 rebuild exon 2059583 2060183 . + . gene_id "RvY_07138"; transcript_id "RvY_07138.1"; Scaffold003 rebuild exon 2060595 2061059 . + . gene_id "RvY_07138"; transcript_id "RvY_07138.1"; Scaffold003 rebuild exon 2061272 2061453 . + . gene_id "RvY_07138"; transcript_id "RvY_07138.1"; Scaffold003 rebuild transcript 2061751 2062924 . - . gene_id "RvY_07139"; transcript_id "RvY_07139.1"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)"; Scaffold003 rebuild exon 2061751 2061956 . - . gene_id "RvY_07139"; transcript_id "RvY_07139.1"; Scaffold003 rebuild exon 2062039 2062924 . - . gene_id "RvY_07139"; transcript_id "RvY_07139.1"; Scaffold003 rebuild transcript 2063659 2069462 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 2063659 2063682 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2065773 2066076 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2066169 2066326 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2066422 2066910 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2067156 2067338 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2067418 2067663 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2067745 2067958 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2068114 2068375 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2068442 2068562 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2068635 2068820 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2068891 2069049 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2069115 2069310 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild exon 2069404 2069462 . + . gene_id "RvY_07140"; transcript_id "RvY_07140.1"; Scaffold003 rebuild transcript 2071243 2071524 . + . gene_id "RvY_07141"; transcript_id "RvY_07141.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2071243 2071524 . + . gene_id "RvY_07141"; transcript_id "RvY_07141.1"; Scaffold003 rebuild transcript 2072004 2075073 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; gene_name "KARS"; annotation "Lysyl-tRNA synthetase"; Pfam "[tRNA_anti] OB-fold nucleic acid binding domain|[tRNA-synt_2d] tRNA synthetases class II core domain (F)|[tRNA-synt_2] tRNA synthetases class II (D, K and N)"; CDD "lysyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.6"; KO "K04567"; similar_genes "SYK_CRIGR(e-value:2.3e-199;bit-score:691.0)"; Scaffold003 rebuild exon 2072004 2072135 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2072337 2072480 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2072562 2072774 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2072883 2073142 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2073222 2073384 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2073466 2073711 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2073774 2073960 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2074139 2074232 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2074299 2074461 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2074536 2074686 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild exon 2074922 2075073 . - . gene_id "RvY_07142"; transcript_id "RvY_07142.1"; Scaffold003 rebuild transcript 2074318 2074743 . + . gene_id "RvY_07143"; transcript_id "RvY_07143.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2074318 2074743 . + . gene_id "RvY_07143"; transcript_id "RvY_07143.1"; Scaffold003 rebuild transcript 2075734 2076829 . - . gene_id "RvY_07144"; transcript_id "RvY_07144.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2075734 2076242 . - . gene_id "RvY_07144"; transcript_id "RvY_07144.1"; Scaffold003 rebuild exon 2076322 2076829 . - . gene_id "RvY_07144"; transcript_id "RvY_07144.1"; Scaffold003 rebuild transcript 2077186 2078325 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.1"; annotation "hypothetical protein."; Pfam "[NPR2] Nitrogen permease regulator 2"; Scaffold003 rebuild exon 2077186 2077414 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.1"; Scaffold003 rebuild exon 2077504 2077621 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.1"; Scaffold003 rebuild exon 2077691 2077821 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.1"; Scaffold003 rebuild exon 2077898 2078132 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.1"; Scaffold003 rebuild exon 2078202 2078325 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.1"; Scaffold003 rebuild transcript 2077804 2078886 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.2"; annotation "hypothetical protein."; Pfam "[NPR2] Nitrogen permease regulator 2"; Scaffold003 rebuild exon 2077804 2078132 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.2"; Scaffold003 rebuild exon 2078202 2078310 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.2"; Scaffold003 rebuild exon 2078393 2078561 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.2"; Scaffold003 rebuild exon 2078644 2078738 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.2"; Scaffold003 rebuild exon 2078806 2078886 . - . gene_id "RvY_07145"; transcript_id "RvY_07145.2"; Scaffold003 rebuild transcript 2079320 2082304 . + . gene_id "RvY_07146"; transcript_id "RvY_07146.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2079320 2079637 . + . gene_id "RvY_07146"; transcript_id "RvY_07146.1"; Scaffold003 rebuild exon 2079704 2080091 . + . gene_id "RvY_07146"; transcript_id "RvY_07146.1"; Scaffold003 rebuild exon 2080459 2081486 . + . gene_id "RvY_07146"; transcript_id "RvY_07146.1"; Scaffold003 rebuild exon 2081687 2082304 . + . gene_id "RvY_07146"; transcript_id "RvY_07146.1"; Scaffold003 rebuild transcript 2084565 2085788 . + . gene_id "RvY_07147"; transcript_id "RvY_07147.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold003 rebuild exon 2084565 2084996 . + . gene_id "RvY_07147"; transcript_id "RvY_07147.1"; Scaffold003 rebuild exon 2085228 2085788 . + . gene_id "RvY_07147"; transcript_id "RvY_07147.1"; Scaffold003 rebuild transcript 2086369 2088040 . + . gene_id "RvY_07148"; transcript_id "RvY_07148.1"; gene_name "C1GALT1"; annotation "putative Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1"; Pfam "[Fringe] Fringe-like"; EC "EC2.4.1.122"; KO "K00731"; similar_genes "C1GLT_DROME(e-value:8.0e-30;bit-score:128.0)"; Scaffold003 rebuild exon 2086369 2086829 . + . gene_id "RvY_07148"; transcript_id "RvY_07148.1"; Scaffold003 rebuild exon 2087010 2087167 . + . gene_id "RvY_07148"; transcript_id "RvY_07148.1"; Scaffold003 rebuild exon 2087250 2087488 . + . gene_id "RvY_07148"; transcript_id "RvY_07148.1"; Scaffold003 rebuild exon 2087825 2088040 . + . gene_id "RvY_07148"; transcript_id "RvY_07148.1"; Scaffold003 rebuild transcript 2088305 2090566 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_15] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat"; Scaffold003 rebuild exon 2088305 2088493 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2088582 2088723 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2088897 2088966 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2089033 2089507 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2089602 2089656 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2089721 2089848 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2089960 2090201 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild exon 2090275 2090566 . - . gene_id "RvY_07149"; transcript_id "RvY_07149.1"; Scaffold003 rebuild transcript 2091149 2092778 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; annotation "Mps one binder kinase activator-like 4"; Pfam "[Mob1_phocein] Mob1/phocein family"; similar_genes "MOB4_DROME(e-value:2.5e-90;bit-score:329.0)"; Scaffold003 rebuild exon 2091149 2091232 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2091368 2091583 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2091667 2091729 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2091795 2091895 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2091974 2092016 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2092079 2092245 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2092335 2092446 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild exon 2092629 2092778 . + . gene_id "RvY_07150"; transcript_id "RvY_07150.1"; Scaffold003 rebuild transcript 2093499 2094382 . - . gene_id "RvY_07151"; transcript_id "RvY_07151.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2093499 2093565 . - . gene_id "RvY_07151"; transcript_id "RvY_07151.1"; Scaffold003 rebuild exon 2093662 2094050 . - . gene_id "RvY_07151"; transcript_id "RvY_07151.1"; Scaffold003 rebuild exon 2094155 2094382 . - . gene_id "RvY_07151"; transcript_id "RvY_07151.1"; Scaffold003 rebuild transcript 2094478 2094660 . + . gene_id "RvY_07152"; transcript_id "RvY_07152.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2094478 2094660 . + . gene_id "RvY_07152"; transcript_id "RvY_07152.1"; Scaffold003 rebuild transcript 2095638 2098435 . - . gene_id "RvY_07153"; transcript_id "RvY_07153.1"; gene_name "RECQL"; annotation "putative ATP-dependent DNA helicase Q1"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "K10899"; similar_genes "RECQ1_HUMAN(e-value:2.5e-37;bit-score:153.0)"; Scaffold003 rebuild exon 2095638 2096595 . - . gene_id "RvY_07153"; transcript_id "RvY_07153.1"; Scaffold003 rebuild exon 2096807 2097385 . - . gene_id "RvY_07153"; transcript_id "RvY_07153.1"; Scaffold003 rebuild exon 2097652 2097921 . - . gene_id "RvY_07153"; transcript_id "RvY_07153.1"; Scaffold003 rebuild exon 2097985 2098063 . - . gene_id "RvY_07153"; transcript_id "RvY_07153.1"; Scaffold003 rebuild exon 2098123 2098435 . - . gene_id "RvY_07153"; transcript_id "RvY_07153.1"; Scaffold003 rebuild transcript 2098863 2100550 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; gene_name "tRNA_bind_EMAP-II_like"; annotation "Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1"; Pfam "[tRNA_bind] Putative tRNA binding domain"; CDD "tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The Scaffold003 rebuild exon 2098863 2098928 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; Scaffold003 rebuild exon 2098993 2099259 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; Scaffold003 rebuild exon 2099348 2099443 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; Scaffold003 rebuild exon 2099540 2099656 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; Scaffold003 rebuild exon 2099761 2100052 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; Scaffold003 rebuild exon 2100285 2100550 . + . gene_id "RvY_07154"; transcript_id "RvY_07154.1"; Scaffold003 rebuild transcript 2101159 2101722 . + . gene_id "RvY_07155"; transcript_id "RvY_07155.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2101159 2101722 . + . gene_id "RvY_07155"; transcript_id "RvY_07155.1"; Scaffold003 rebuild transcript 2102624 2103835 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.1"; gene_name "TLDc"; annotation "hypothetical protein."; Pfam "[TLD]"; CDD "domain in TBC and LysM domain containing proteins."; Scaffold003 rebuild exon 2102624 2103091 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.1"; Scaffold003 rebuild exon 2103171 2103374 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.1"; Scaffold003 rebuild exon 2103464 2103639 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.1"; Scaffold003 rebuild exon 2103697 2103835 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.1"; Scaffold003 rebuild transcript 2102624 2103643 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.2"; gene_name "TLDc"; annotation "hypothetical protein."; Pfam "[TLD]"; CDD "domain in TBC and LysM domain containing proteins."; Scaffold003 rebuild exon 2102624 2103091 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.2"; Scaffold003 rebuild exon 2103171 2103374 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.2"; Scaffold003 rebuild exon 2103464 2103643 . + . gene_id "RvY_07156"; transcript_id "RvY_07156.2"; Scaffold003 rebuild transcript 2105098 2105796 . + . gene_id "RvY_07157"; transcript_id "RvY_07157.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2105098 2105796 . + . gene_id "RvY_07157"; transcript_id "RvY_07157.1"; Scaffold003 rebuild transcript 2106167 2111040 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; gene_name "WD40"; annotation "hypothetical protein."; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "MIO_DANRE(e-value:1.6e-13;bit-score:74.0)"; Scaffold003 rebuild exon 2106167 2106275 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2106361 2106463 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2106536 2106647 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2106708 2107551 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2109089 2109498 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2109694 2109815 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2109883 2110191 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2110261 2110586 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2110658 2110841 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild exon 2110929 2111040 . - . gene_id "RvY_07158"; transcript_id "RvY_07158.1"; Scaffold003 rebuild transcript 2111986 2114750 . + . gene_id "RvY_07159"; transcript_id "RvY_07159.1"; annotation "hypothetical protein."; Pfam "[zf-HC5HC2H] PHD-like zinc-binding domain"; Scaffold003 rebuild exon 2111986 2112518 . + . gene_id "RvY_07159"; transcript_id "RvY_07159.1"; Scaffold003 rebuild exon 2112820 2113350 . + . gene_id "RvY_07159"; transcript_id "RvY_07159.1"; Scaffold003 rebuild exon 2113642 2114026 . + . gene_id "RvY_07159"; transcript_id "RvY_07159.1"; Scaffold003 rebuild exon 2114340 2114750 . + . gene_id "RvY_07159"; transcript_id "RvY_07159.1"; Scaffold003 rebuild transcript 2116786 2117205 . + . gene_id "RvY_07160"; transcript_id "RvY_07160.1"; annotation "hypothetical protein."; Pfam "[Sulfakinin] Sulfakinin family"; Scaffold003 rebuild exon 2116786 2117205 . + . gene_id "RvY_07160"; transcript_id "RvY_07160.1"; Scaffold003 rebuild transcript 2118796 2122078 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; gene_name "GPT"; annotation "Alanine aminotransferase 2-like"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]"; EC "EC2.6.1.2"; KO "K00814"; similar_genes "ALAT2_DANRE(e-value:6.0e-62;bit-score:235.0)"; Scaffold003 rebuild exon 2118796 2118886 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2119010 2119122 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2119309 2119530 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2119741 2119849 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2119957 2120090 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2120175 2120384 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2120454 2120567 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2120650 2120751 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2121391 2121531 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2121612 2121707 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild exon 2121767 2122078 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.1"; Scaffold003 rebuild transcript 2118796 2122605 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; gene_name "GPT"; annotation "Alanine aminotransferase 2-like"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]"; EC "EC2.6.1.2"; KO "K00814"; similar_genes "ALAT2_DANRE(e-value:6.0e-62;bit-score:235.0)"; Scaffold003 rebuild exon 2118796 2118886 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2119010 2119122 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2119309 2119530 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2119741 2119849 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2119957 2120090 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2120175 2120384 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2120454 2120567 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2120650 2120751 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2121391 2121531 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2121612 2121707 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2121767 2121966 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild exon 2122572 2122605 . - . gene_id "RvY_07161"; transcript_id "RvY_07161.2"; Scaffold003 rebuild transcript 2122597 2123957 . + . gene_id "RvY_07162"; transcript_id "RvY_07162.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2122597 2122713 . + . gene_id "RvY_07162"; transcript_id "RvY_07162.1"; Scaffold003 rebuild exon 2123583 2123957 . + . gene_id "RvY_07162"; transcript_id "RvY_07162.1"; Scaffold003 rebuild transcript 2131267 2132972 . + . gene_id "RvY_07164"; transcript_id "RvY_07164.1"; gene_name "CzcD"; annotation "hypothetical protein."; Pfam "[Cation_efflux] Cation efflux family"; CDD "Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]"; KO "K14688"; similar_genes "COT1_YEAST(e-value:4.4e-22;bit-score:102.0)"; Scaffold003 rebuild exon 2131267 2131660 . + . gene_id "RvY_07164"; transcript_id "RvY_07164.1"; Scaffold003 rebuild exon 2131745 2131975 . + . gene_id "RvY_07164"; transcript_id "RvY_07164.1"; Scaffold003 rebuild exon 2132203 2132972 . + . gene_id "RvY_07164"; transcript_id "RvY_07164.1"; Scaffold003 rebuild transcript 2133582 2135210 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15119"; similar_genes "S2540_BOVIN(e-value:7.5e-22;bit-score:102.0)"; Scaffold003 rebuild exon 2133582 2134051 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild exon 2134114 2134212 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild exon 2134313 2134387 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild exon 2134473 2134597 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild exon 2134668 2134735 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild exon 2134830 2135011 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild exon 2135066 2135210 . - . gene_id "RvY_07165"; transcript_id "RvY_07165.1"; Scaffold003 rebuild transcript 2135662 2136339 . + . gene_id "RvY_07166"; transcript_id "RvY_07166.1"; gene_name "RP-S14e"; annotation "40S ribosomal protein S14"; Pfam "[Ribosomal_S11] Ribosomal protein S11"; CDD "40S ribosomal protein S14; Provisional"; KO "K02955"; similar_genes "RS14_CAEEL(e-value:2.0e-62;bit-score:236.0)"; Scaffold003 rebuild exon 2135662 2135813 . + . gene_id "RvY_07166"; transcript_id "RvY_07166.1"; Scaffold003 rebuild exon 2135953 2136191 . + . gene_id "RvY_07166"; transcript_id "RvY_07166.1"; Scaffold003 rebuild exon 2136272 2136339 . + . gene_id "RvY_07166"; transcript_id "RvY_07166.1"; Scaffold003 rebuild transcript 2137243 2138640 . - . gene_id "RvY_07167"; transcript_id "RvY_07167.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2137243 2137365 . - . gene_id "RvY_07167"; transcript_id "RvY_07167.1"; Scaffold003 rebuild exon 2137505 2137709 . - . gene_id "RvY_07167"; transcript_id "RvY_07167.1"; Scaffold003 rebuild exon 2137799 2138002 . - . gene_id "RvY_07167"; transcript_id "RvY_07167.1"; Scaffold003 rebuild exon 2138066 2138640 . - . gene_id "RvY_07167"; transcript_id "RvY_07167.1"; Scaffold003 rebuild transcript 2139337 2141535 . + . gene_id "RvY_07168"; transcript_id "RvY_07168.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2139337 2139454 . + . gene_id "RvY_07168"; transcript_id "RvY_07168.1"; Scaffold003 rebuild exon 2140857 2141051 . + . gene_id "RvY_07168"; transcript_id "RvY_07168.1"; Scaffold003 rebuild exon 2141078 2141535 . + . gene_id "RvY_07168"; transcript_id "RvY_07168.1"; Scaffold003 rebuild transcript 2142050 2144987 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; annotation "putative"; Pfam "[DUF2042] Uncharacterized conserved protein (DUF2042)"; similar_genes "K0776_CHICK(e-value:1.8e-33;bit-score:140.0)"; Scaffold003 rebuild exon 2142050 2142514 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild exon 2142661 2142791 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild exon 2142862 2143257 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild exon 2143524 2144084 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild exon 2144144 2144448 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild exon 2144522 2144794 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild exon 2144908 2144987 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.1"; Scaffold003 rebuild transcript 2142050 2144987 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; annotation "putative"; Pfam "[DUF2042] Uncharacterized conserved protein (DUF2042)"; similar_genes "K0776_CHICK(e-value:1.8e-33;bit-score:140.0)"; Scaffold003 rebuild exon 2142050 2142514 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild exon 2142661 2142791 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild exon 2142862 2143254 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild exon 2143524 2144084 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild exon 2144144 2144448 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild exon 2144522 2144794 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild exon 2144908 2144987 . - . gene_id "RvY_07169"; transcript_id "RvY_07169.2"; Scaffold003 rebuild transcript 2146273 2149366 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; gene_name "SIK1"; annotation "Nucleolar protein 58"; Pfam "[NOP5NT] NOP5NT (NUC127) domain|[NOSIC] NOSIC (NUC001) domain|[Nop] Putative snoRNA binding domain"; CDD "Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]"; KO "K14565"; similar_genes "NOP58_CRYNE(e-value:2.4e-65;bit-score:246.0)"; Scaffold003 rebuild exon 2146273 2146317 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2146457 2146533 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2146618 2146670 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2146749 2146873 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2146983 2147119 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2147310 2147374 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2147473 2147607 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2147670 2147815 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2148022 2148148 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2148336 2148499 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2148612 2148805 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2148877 2149055 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2149134 2149217 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild exon 2149293 2149366 . + . gene_id "RvY_07170"; transcript_id "RvY_07170.1"; Scaffold003 rebuild transcript 2149946 2154064 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; annotation "hypothetical protein."; Pfam "[OTU] OTU-like cysteine protease"; KO "K13718"; Scaffold003 rebuild exon 2149946 2149992 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2150097 2150288 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2150398 2150591 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2150890 2151253 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2151475 2151620 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2151695 2151807 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2152008 2152072 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2152169 2152295 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2152392 2152503 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2152605 2152719 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2152920 2153001 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2153104 2153176 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2153271 2153323 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2153382 2153453 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2153676 2153817 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild exon 2153907 2154064 . - . gene_id "RvY_07171"; transcript_id "RvY_07171.1"; Scaffold003 rebuild transcript 2154728 2156517 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; gene_name "PlsC"; annotation "hypothetical protein."; Pfam "[Acyltransferase]"; CDD "Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family."; EC "EC2.3.1.51"; KO "K13513"; similar_genes "LCLT1_DANRE(e-value:4.3e-20;bit-score:96.0)"; Scaffold003 rebuild exon 2154728 2155188 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; Scaffold003 rebuild exon 2155388 2155538 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; Scaffold003 rebuild exon 2155603 2155655 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; Scaffold003 rebuild exon 2155719 2155876 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; Scaffold003 rebuild exon 2156083 2156180 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; Scaffold003 rebuild exon 2156317 2156517 . - . gene_id "RvY_07172"; transcript_id "RvY_07172.1"; Scaffold003 rebuild transcript 2156897 2160215 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; gene_name "K01968"; annotation "Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial"; Pfam "[Dala_Dala_lig_C] D-ala D-ala ligase C-terminus|[Biotin_carb_C] Biotin carboxylase C-terminal domain|[ATP-grasp]|[HlyD] HlyD family secretion protein|[ATP-grasp_4] ATP-grasp domain|[CPSase_L_chain] Carbamoyl-phosphate synthase L chain, N-terminal domain|[Biotin_lipoyl_2] Biotin-lipoyl like|[CPSase_L_D2] Carbamoyl-phosphate synthase L chain, ATP binding domain|[Biotin_lipoyl] Biotin-requiring enzyme"; CDD "Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]"; EC "EC6.4.1.4"; KO "K01968"; similar_genes "MCCA_DICDI(e-value:1.2e-102;bit-score:370.0)"; Scaffold003 rebuild exon 2156897 2156949 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2157019 2157110 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2157218 2157351 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2157425 2157581 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2157667 2157875 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2157948 2158069 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2158148 2158472 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2158634 2158939 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2159160 2159645 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2159846 2160028 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild exon 2160102 2160215 . + . gene_id "RvY_07173"; transcript_id "RvY_07173.1"; Scaffold003 rebuild transcript 2160976 2165442 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2160976 2161044 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2161154 2161248 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2161343 2161495 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2161729 2162110 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2163346 2164363 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2164692 2164956 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2165026 2165189 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild exon 2165306 2165442 . + . gene_id "RvY_07174"; transcript_id "RvY_07174.1"; Scaffold003 rebuild transcript 2165643 2169910 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; annotation "Furin-like protease 2"; Pfam "[Peptidase_S8] Subtilase family|[P_proprotein] Proprotein convertase P-domain"; EC "EC3.4.21.75"; KO "K14647"; similar_genes "FUR2_DROME(e-value:8.7e-93;bit-score:337.0)"; Scaffold003 rebuild exon 2165643 2166216 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2166548 2166665 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2166789 2167067 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2167216 2167329 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2167405 2167444 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2167560 2167622 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2167708 2167783 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2167860 2167893 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2167984 2168031 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2168276 2168387 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2168595 2168729 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2168914 2169057 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2169156 2169245 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild exon 2169713 2169910 . - . gene_id "RvY_07175"; transcript_id "RvY_07175.1"; Scaffold003 rebuild transcript 2168247 2168588 . + . gene_id "RvY_07176"; transcript_id "RvY_07176.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2168247 2168588 . + . gene_id "RvY_07176"; transcript_id "RvY_07176.1"; Scaffold003 rebuild transcript 2171165 2172512 . - . gene_id "RvY_07177"; transcript_id "RvY_07177.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2171165 2171665 . - . gene_id "RvY_07177"; transcript_id "RvY_07177.1"; Scaffold003 rebuild exon 2171860 2172215 . - . gene_id "RvY_07177"; transcript_id "RvY_07177.1"; Scaffold003 rebuild exon 2172281 2172512 . - . gene_id "RvY_07177"; transcript_id "RvY_07177.1"; Scaffold003 rebuild transcript 2173064 2182309 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; annotation "hypothetical protein."; similar_genes "U493_AEDAE(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 2173064 2173108 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2173265 2173813 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2173875 2174379 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2174516 2175219 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2175278 2175845 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2175910 2176146 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2176360 2176847 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2177080 2177402 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2177689 2178109 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2178307 2178694 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2178831 2179459 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2179795 2180077 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild exon 2180136 2182309 . + . gene_id "RvY_07178"; transcript_id "RvY_07178.1"; Scaffold003 rebuild transcript 2183386 2184504 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain"; Scaffold003 rebuild exon 2183386 2183710 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; Scaffold003 rebuild exon 2183907 2183954 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; Scaffold003 rebuild exon 2184017 2184058 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; Scaffold003 rebuild exon 2184153 2184203 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; Scaffold003 rebuild exon 2184287 2184364 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; Scaffold003 rebuild exon 2184476 2184504 . - . gene_id "RvY_07179"; transcript_id "RvY_07179.1"; Scaffold003 rebuild transcript 2184401 2184628 . + . gene_id "RvY_07180"; transcript_id "RvY_07180.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2184401 2184628 . + . gene_id "RvY_07180"; transcript_id "RvY_07180.1"; Scaffold003 rebuild transcript 2186435 2187547 . - . gene_id "RvY_07181"; transcript_id "RvY_07181.1"; annotation "hypothetical protein."; similar_genes "WBP11_RAT(e-value:5.1e-06;bit-score:49.0)"; Scaffold003 rebuild exon 2186435 2187547 . - . gene_id "RvY_07181"; transcript_id "RvY_07181.1"; Scaffold003 rebuild transcript 2189602 2190006 . - . gene_id "RvY_07182"; transcript_id "RvY_07182.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2189602 2190006 . - . gene_id "RvY_07182"; transcript_id "RvY_07182.1"; Scaffold003 rebuild transcript 2190401 2190904 . - . gene_id "RvY_07183"; transcript_id "RvY_07183.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 2190401 2190593 . - . gene_id "RvY_07183"; transcript_id "RvY_07183.1"; Scaffold003 rebuild exon 2190723 2190904 . - . gene_id "RvY_07183"; transcript_id "RvY_07183.1"; Scaffold003 rebuild transcript 2190393 2190878 . - . gene_id "RvY_07183"; transcript_id "RvY_07183.2"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 2190393 2190593 . - . gene_id "RvY_07183"; transcript_id "RvY_07183.2"; Scaffold003 rebuild exon 2190723 2190878 . - . gene_id "RvY_07183"; transcript_id "RvY_07183.2"; Scaffold003 rebuild transcript 2190980 2191633 . - . gene_id "RvY_07184"; transcript_id "RvY_07184.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold003 rebuild exon 2190980 2191633 . - . gene_id "RvY_07184"; transcript_id "RvY_07184.1"; Scaffold003 rebuild transcript 2192089 2193060 . + . gene_id "RvY_07185"; transcript_id "RvY_07185.1"; gene_name "TIGR03438"; annotation "hypothetical protein."; Pfam "[DUF2260] Uncharacterized conserved protein (DUF2260)"; CDD "probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases"; Scaffold003 rebuild exon 2192089 2193060 . + . gene_id "RvY_07185"; transcript_id "RvY_07185.1"; Scaffold003 rebuild transcript 2193450 2199482 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; annotation "hypothetical protein."; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; Scaffold003 rebuild exon 2193450 2193493 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2193570 2193775 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2193874 2194151 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2194332 2194425 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2194502 2194652 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2194743 2194978 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2195166 2195671 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2195787 2195907 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2198254 2198362 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild exon 2198861 2199482 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.1"; Scaffold003 rebuild transcript 2193450 2195882 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; annotation "hypothetical protein."; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; Scaffold003 rebuild exon 2193450 2193493 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2193570 2193742 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2193829 2194151 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2194332 2194425 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2194502 2194652 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2194743 2194978 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2195166 2195671 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild exon 2195787 2195882 . - . gene_id "RvY_07186"; transcript_id "RvY_07186.2"; Scaffold003 rebuild transcript 2199487 2199705 . + . gene_id "RvY_07187"; transcript_id "RvY_07187.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2199487 2199705 . + . gene_id "RvY_07187"; transcript_id "RvY_07187.1"; Scaffold003 rebuild transcript 2203093 2203917 . + . gene_id "RvY_07188"; transcript_id "RvY_07188.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2203093 2203917 . + . gene_id "RvY_07188"; transcript_id "RvY_07188.1"; Scaffold003 rebuild transcript 2203171 2203902 . - . gene_id "RvY_07189"; transcript_id "RvY_07189.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 2203171 2203902 . - . gene_id "RvY_07189"; transcript_id "RvY_07189.1"; Scaffold003 rebuild transcript 2204737 2217188 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; gene_name "ABL1"; annotation "Tyrosine-protein kinase ABL2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[SH3_2] Variant SH3 domain|[SH2]|[SH3_1] SH3 domain"; CDD "Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively Scaffold003 rebuild exon 2204737 2206226 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2206336 2206916 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2207191 2207586 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2207912 2208385 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2208444 2208749 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2209028 2209160 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2209836 2210126 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild exon 2216954 2217188 . - . gene_id "RvY_07190"; transcript_id "RvY_07190.1"; Scaffold003 rebuild transcript 2218261 2220703 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2218261 2218462 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2218521 2218898 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2219107 2219202 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2219310 2219543 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2219630 2219770 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2219963 2220181 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2220259 2220456 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild exon 2220576 2220703 . + . gene_id "RvY_07191"; transcript_id "RvY_07191.1"; Scaffold003 rebuild transcript 2221695 2227049 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; gene_name "(1,2)TRPA1(3)ANK"; annotation "(1,2)transient receptor potential cation channel, subfamily A, member 1(3)hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ion_trans] Ion transport protein|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "(1,2)K04984"; similar_genes "(1,2)TRPA1_MOUSE(e-value:1.0e-12;bit-score:71.0)(3)TRPA1_DROME(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 2221695 2221892 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2221956 2222112 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2222200 2222375 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2222445 2222658 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2222755 2222894 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2222957 2223098 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2223352 2223401 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2223485 2223691 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2223764 2223901 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2223976 2223998 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2224073 2224152 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2224250 2224334 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2224400 2224452 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2224536 2224597 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2224659 2224825 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2224894 2224978 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2225032 2225094 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2225159 2225251 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2225340 2225410 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2225485 2225860 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2225922 2226112 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2226173 2226332 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2226522 2226740 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild exon 2226807 2227049 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.1"; Scaffold003 rebuild transcript 2221695 2227049 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; gene_name "(1,2)TRPA1(3)ANK"; annotation "(1,2)transient receptor potential cation channel, subfamily A, member 1(3)hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ion_trans] Ion transport protein|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "(1,2)K04984"; similar_genes "(1,2)TRPA1_MOUSE(e-value:1.0e-12;bit-score:71.0)(3)TRPA1_DROME(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 2221695 2221892 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2221956 2222112 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2222200 2222375 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2222445 2222658 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2222755 2222894 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2222957 2223098 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2223352 2223401 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2223485 2223691 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2223764 2223901 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2223976 2223998 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2224073 2224152 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2224250 2224334 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2224400 2224452 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2224536 2224597 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2224659 2224825 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2224894 2224978 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2225032 2225094 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2225159 2225251 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2225340 2225410 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2225485 2225669 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2225736 2225860 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2225922 2226112 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2226173 2226332 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2226522 2226740 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild exon 2226807 2227049 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.2"; Scaffold003 rebuild transcript 2221695 2226791 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; gene_name "(1,2)TRPA1(3)ANK"; annotation "(1,2)transient receptor potential cation channel, subfamily A, member 1(3)hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ion_trans] Ion transport protein|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "(1,2)K04984"; similar_genes "(1,2)TRPA1_MOUSE(e-value:1.0e-12;bit-score:71.0)(3)TRPA1_DROME(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 2221695 2221892 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2221956 2222112 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2222200 2222375 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2222445 2222658 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2222755 2222894 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2222957 2223098 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2223352 2223401 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2223485 2223691 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2223764 2223901 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2223976 2223998 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2224073 2224152 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2224250 2224334 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2224400 2224452 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2224536 2224597 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2224659 2224825 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2224894 2224978 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2225032 2225094 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2225159 2225251 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2225340 2225410 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2225485 2225669 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2225736 2225860 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2225922 2226112 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2226173 2226332 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild exon 2226522 2226791 . + . gene_id "RvY_07192"; transcript_id "RvY_07192.3"; Scaffold003 rebuild transcript 2228212 2233311 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; gene_name "VARS"; annotation "Valyl-tRNA synthetase"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[Anticodon_1] Anticodon-binding domain of tRNA|[tRNA-synt_1_2] Leucyl-tRNA synthetase, Domain 2|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)"; CDD "valyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.9"; KO "K01873"; similar_genes "SYVC_TAKRU(e-value:9.7e-90;bit-score:327.0)"; Scaffold003 rebuild exon 2228212 2228550 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2228781 2229105 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2229170 2229298 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2229360 2229576 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2229647 2229735 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2229799 2229966 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2230205 2230524 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2230632 2230839 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2230922 2231064 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2231258 2231482 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2231546 2231692 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2231962 2232388 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2232610 2232703 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2232782 2232919 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild exon 2233047 2233311 . - . gene_id "RvY_07193"; transcript_id "RvY_07193.1"; Scaffold003 rebuild transcript 2234232 2236309 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; gene_name "ECM4"; annotation "putative Uncharacterized protein yqjG"; Pfam "[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]"; KO "K07393"; similar_genes "YQJG_ECOLI(e-value:2.1e-47;bit-score:187.0)"; Scaffold003 rebuild exon 2234232 2234438 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2234506 2234622 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2234687 2234780 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2234840 2235012 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2235091 2235209 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2235275 2235365 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2235457 2235527 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2236015 2236039 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild exon 2236133 2236309 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.1"; Scaffold003 rebuild transcript 2234232 2236186 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; gene_name "ECM4"; annotation "putative Uncharacterized protein yqjG"; Pfam "[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]"; KO "K07393"; similar_genes "YQJG_ECOLI(e-value:2.1e-47;bit-score:187.0)"; Scaffold003 rebuild exon 2234232 2234438 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2234506 2234622 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2234687 2234780 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2234840 2235012 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2235091 2235209 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2235275 2235365 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2235457 2235527 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2236015 2236039 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild exon 2236133 2236186 . - . gene_id "RvY_07194"; transcript_id "RvY_07194.2"; Scaffold003 rebuild transcript 2236872 2237393 . + . gene_id "RvY_07195"; transcript_id "RvY_07195.1"; annotation "hypothetical protein."; Pfam "[SYS1] Integral membrane protein S linking to the trans Golgi network"; Scaffold003 rebuild exon 2236872 2237393 . + . gene_id "RvY_07195"; transcript_id "RvY_07195.1"; Scaffold003 rebuild transcript 2238119 2242679 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; gene_name "APC3"; annotation "anaphase-promoting complex subunit 3"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_15] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; KO "K03350"; similar_genes "CDC27_MOUSE(e-value:3.4e-24;bit-score:109.0)"; Scaffold003 rebuild exon 2238119 2238319 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2238683 2238899 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2239028 2239214 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2239275 2239591 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2239789 2240026 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2240103 2240434 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2240743 2240943 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2241009 2241333 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2241577 2242078 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2242414 2242486 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild exon 2242561 2242679 . + . gene_id "RvY_07196"; transcript_id "RvY_07196.1"; Scaffold003 rebuild transcript 2243833 2245433 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.1"; gene_name "(1)CA"; annotation "hypothetical protein."; CDD "(1)Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 2243833 2245121 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.1"; Scaffold003 rebuild exon 2245214 2245433 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.1"; Scaffold003 rebuild transcript 2243833 2245433 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.2"; gene_name "(1)CA"; annotation "hypothetical protein."; CDD "(1)Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 2243833 2245121 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.2"; Scaffold003 rebuild exon 2245214 2245268 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.2"; Scaffold003 rebuild exon 2245347 2245433 . - . gene_id "RvY_07197"; transcript_id "RvY_07197.2"; Scaffold003 rebuild transcript 2246719 2249814 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; gene_name "(1,2)PKA(3)STKc_PRKX_like"; annotation "(1,2)putative Protein kinase DC2(3)putative Serine/threonine-protein kinase PRKX"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney."; EC "(1,2)EC2.7.11.1|EC2.7.11.11(3)EC2.7.11.1"; KO "(1,2)K04345"; similar_genes "(1,2)KDC2_DROME(e-value:1.4e-50;bit-score:197.0)(3)PRKX_MOUSE(e-value:8.1e-49;bit-score:191.0)"; Scaffold003 rebuild exon 2246719 2247061 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2247579 2247733 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2247836 2247864 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2248128 2248391 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2248529 2248597 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2248697 2248915 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2248994 2249051 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2249129 2249206 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild exon 2249689 2249814 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.1"; Scaffold003 rebuild transcript 2246719 2249814 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; gene_name "(1,2)PKA(3)STKc_PRKX_like"; annotation "(1,2)putative Protein kinase DC2(3)putative Serine/threonine-protein kinase PRKX"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney."; EC "(1,2)EC2.7.11.1|EC2.7.11.11(3)EC2.7.11.1"; KO "(1,2)K04345"; similar_genes "(1,2)KDC2_DROME(e-value:1.4e-50;bit-score:197.0)(3)PRKX_MOUSE(e-value:8.1e-49;bit-score:191.0)"; Scaffold003 rebuild exon 2246719 2247061 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2247579 2247733 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2247836 2247864 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2248128 2248391 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2248697 2248915 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2248994 2249051 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2249129 2249206 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild exon 2249689 2249814 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.2"; Scaffold003 rebuild transcript 2246719 2248452 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.3"; gene_name "(1,2)PKA(3)STKc_PRKX_like"; annotation "(1,2)putative Protein kinase DC2(3)putative Serine/threonine-protein kinase PRKX"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney."; EC "(1,2)EC2.7.11.1|EC2.7.11.11(3)EC2.7.11.1"; KO "(1,2)K04345"; similar_genes "(1,2)KDC2_DROME(e-value:1.4e-50;bit-score:197.0)(3)PRKX_MOUSE(e-value:8.1e-49;bit-score:191.0)"; Scaffold003 rebuild exon 2246719 2247061 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.3"; Scaffold003 rebuild exon 2247579 2247733 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.3"; Scaffold003 rebuild exon 2247836 2247864 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.3"; Scaffold003 rebuild exon 2248128 2248452 . + . gene_id "RvY_07198"; transcript_id "RvY_07198.3"; Scaffold003 rebuild transcript 2250750 2252307 . + . gene_id "RvY_07199"; transcript_id "RvY_07199.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold003 rebuild exon 2250750 2250837 . + . gene_id "RvY_07199"; transcript_id "RvY_07199.1"; Scaffold003 rebuild exon 2250979 2251926 . + . gene_id "RvY_07199"; transcript_id "RvY_07199.1"; Scaffold003 rebuild exon 2252105 2252307 . + . gene_id "RvY_07199"; transcript_id "RvY_07199.1"; Scaffold003 rebuild transcript 2252433 2254239 . - . gene_id "RvY_07200"; transcript_id "RvY_07200.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 2252433 2252654 . - . gene_id "RvY_07200"; transcript_id "RvY_07200.1"; Scaffold003 rebuild exon 2253799 2254239 . - . gene_id "RvY_07200"; transcript_id "RvY_07200.1"; Scaffold003 rebuild transcript 2257253 2259436 . - . gene_id "RvY_07201"; transcript_id "RvY_07201.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2257253 2257520 . - . gene_id "RvY_07201"; transcript_id "RvY_07201.1"; Scaffold003 rebuild exon 2257590 2257872 . - . gene_id "RvY_07201"; transcript_id "RvY_07201.1"; Scaffold003 rebuild exon 2258093 2258162 . - . gene_id "RvY_07201"; transcript_id "RvY_07201.1"; Scaffold003 rebuild exon 2258258 2258504 . - . gene_id "RvY_07201"; transcript_id "RvY_07201.1"; Scaffold003 rebuild exon 2258598 2259436 . - . gene_id "RvY_07201"; transcript_id "RvY_07201.1"; Scaffold003 rebuild transcript 2261941 2262366 . - . gene_id "RvY_07202"; transcript_id "RvY_07202.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2261941 2262366 . - . gene_id "RvY_07202"; transcript_id "RvY_07202.1"; Scaffold003 rebuild transcript 2262541 2262987 . - . gene_id "RvY_07203"; transcript_id "RvY_07203.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2262541 2262987 . - . gene_id "RvY_07203"; transcript_id "RvY_07203.1"; Scaffold003 rebuild transcript 2263231 2263515 . - . gene_id "RvY_07204"; transcript_id "RvY_07204.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold003 rebuild exon 2263231 2263515 . - . gene_id "RvY_07204"; transcript_id "RvY_07204.1"; Scaffold003 rebuild transcript 2264968 2265568 . + . gene_id "RvY_07205"; transcript_id "RvY_07205.1"; annotation "hypothetical protein."; Pfam "[Cmc1] Cytochrome c oxidase biogenesis protein Cmc1 like"; similar_genes "CP061_DANRE(e-value:1.2e-11;bit-score:68.0)"; Scaffold003 rebuild exon 2264968 2265048 . + . gene_id "RvY_07205"; transcript_id "RvY_07205.1"; Scaffold003 rebuild exon 2265230 2265301 . + . gene_id "RvY_07205"; transcript_id "RvY_07205.1"; Scaffold003 rebuild exon 2265428 2265568 . + . gene_id "RvY_07205"; transcript_id "RvY_07205.1"; Scaffold003 rebuild transcript 2266027 2268294 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; gene_name "LAC1"; annotation "Acyl-CoA-dependent ceramide synthase [EC:2.3.1.24]"; Pfam "[TRAM_LAG1_CLN8] TLC domain|[Homeobox]"; CDD "TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains."; EC "EC2.3.1.24"; KO "K04710"; similar_genes "LASS4_MOUSE(e-value:3.3e-20;bit-score:96.0)"; Scaffold003 rebuild exon 2266027 2266209 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2266277 2266430 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2266489 2266595 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2266842 2266970 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2267081 2267173 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2267367 2267417 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2267500 2267557 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2267654 2267766 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2267840 2267966 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild exon 2268116 2268294 . - . gene_id "RvY_07206"; transcript_id "RvY_07206.1"; Scaffold003 rebuild transcript 2269825 2271727 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; gene_name "LAC1"; annotation "putative LAG1 longevity assurance homolog 6"; Pfam "[TRAM_LAG1_CLN8] TLC domain|[Homeobox]"; CDD "TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains."; EC "EC2.3.1.24"; KO "K04710"; similar_genes "LASS6_MOUSE(e-value:3.6e-32;bit-score:136.0)"; Scaffold003 rebuild exon 2269825 2270003 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2270070 2270199 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2270280 2270386 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2270450 2270507 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2270633 2270683 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2270768 2270860 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2270930 2271058 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2271147 2271253 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2271357 2271516 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild exon 2271590 2271727 . + . gene_id "RvY_07207"; transcript_id "RvY_07207.1"; Scaffold003 rebuild transcript 2272521 2272709 . - . gene_id "RvY_07208"; transcript_id "RvY_07208.1"; gene_name "PAX"; annotation "hypothetical protein."; Pfam "[PAX] 'Paired box' domain"; CDD "Paired Box domain."; similar_genes "PAX4_RAT(e-value:9.2e-14;bit-score:75.0)"; Scaffold003 rebuild exon 2272521 2272709 . - . gene_id "RvY_07208"; transcript_id "RvY_07208.1"; Scaffold003 rebuild transcript 2273275 2277004 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; gene_name "YSH1"; annotation "putative Cleavage and polyadenylation specificity factor subunit 3"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Beta-Casp]|[Lactamase_B_3] Beta-lactamase superfamily domain|(1)[CPSF73-100_C] Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term|[Lactamase_B_2] Beta-lactamase superfamily domain|(1)[RMMBL] RNA-metabolising metallo-beta-lactamase"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; EC "EC3.1.27.-"; KO "(1)K14403"; similar_genes "(1)CPSF3_BOVIN(e-value:4.0e-46;bit-score:182.0)(2)CPSF3_BOVIN(e-value:8.7e-42;bit-score:168.0)"; Scaffold003 rebuild exon 2273275 2273394 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2273598 2273764 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2273843 2273933 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2273996 2274180 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2274258 2274516 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2274587 2274892 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2275085 2275260 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2275327 2275477 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2275536 2275625 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2275687 2275779 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2275861 2276068 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2276135 2276296 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2276371 2276653 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild exon 2276719 2277004 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.1"; Scaffold003 rebuild transcript 2275037 2277004 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; gene_name "YSH1"; annotation "putative Cleavage and polyadenylation specificity factor subunit 3"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Beta-Casp]|[Lactamase_B_3] Beta-lactamase superfamily domain|(1)[CPSF73-100_C] Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term|[Lactamase_B_2] Beta-lactamase superfamily domain|(1)[RMMBL] RNA-metabolising metallo-beta-lactamase"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; EC "EC3.1.27.-"; KO "(1)K14403"; similar_genes "(1)CPSF3_BOVIN(e-value:4.0e-46;bit-score:182.0)(2)CPSF3_BOVIN(e-value:8.7e-42;bit-score:168.0)"; Scaffold003 rebuild exon 2275037 2275260 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2275327 2275477 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2275536 2275625 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2275687 2275779 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2275861 2276068 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2276135 2276296 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2276371 2276653 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild exon 2276719 2277004 . - . gene_id "RvY_07209"; transcript_id "RvY_07209.2"; Scaffold003 rebuild transcript 2277388 2278485 . + . gene_id "RvY_07210"; transcript_id "RvY_07210.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2277388 2277741 . + . gene_id "RvY_07210"; transcript_id "RvY_07210.1"; Scaffold003 rebuild exon 2278002 2278138 . + . gene_id "RvY_07210"; transcript_id "RvY_07210.1"; Scaffold003 rebuild exon 2278213 2278401 . + . gene_id "RvY_07210"; transcript_id "RvY_07210.1"; Scaffold003 rebuild exon 2278467 2278485 . + . gene_id "RvY_07210"; transcript_id "RvY_07210.1"; Scaffold003 rebuild transcript 2279094 2279988 . - . gene_id "RvY_07211"; transcript_id "RvY_07211.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2279094 2279237 . - . gene_id "RvY_07211"; transcript_id "RvY_07211.1"; Scaffold003 rebuild exon 2279878 2279988 . - . gene_id "RvY_07211"; transcript_id "RvY_07211.1"; Scaffold003 rebuild transcript 2281407 2284039 . + . gene_id "RvY_07212"; transcript_id "RvY_07212.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2281407 2281640 . + . gene_id "RvY_07212"; transcript_id "RvY_07212.1"; Scaffold003 rebuild exon 2282447 2282728 . + . gene_id "RvY_07212"; transcript_id "RvY_07212.1"; Scaffold003 rebuild exon 2283211 2283579 . + . gene_id "RvY_07212"; transcript_id "RvY_07212.1"; Scaffold003 rebuild exon 2283658 2283818 . + . gene_id "RvY_07212"; transcript_id "RvY_07212.1"; Scaffold003 rebuild exon 2283886 2284039 . + . gene_id "RvY_07212"; transcript_id "RvY_07212.1"; Scaffold003 rebuild transcript 2284470 2285504 . - . gene_id "RvY_07213"; transcript_id "RvY_07213.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2284470 2285322 . - . gene_id "RvY_07213"; transcript_id "RvY_07213.1"; Scaffold003 rebuild exon 2285476 2285504 . - . gene_id "RvY_07213"; transcript_id "RvY_07213.1"; Scaffold003 rebuild transcript 2286045 2286702 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.1"; annotation "hypothetical protein."; Pfam "[BolA] BolA-like protein"; similar_genes "(1)BOLA3_HUMAN(e-value:6.7e-08;bit-score:55.0)(2,3)BOLA3_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 2286045 2286214 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.1"; Scaffold003 rebuild exon 2286308 2286511 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.1"; Scaffold003 rebuild exon 2286597 2286702 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.1"; Scaffold003 rebuild transcript 2285923 2286702 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.2"; annotation "hypothetical protein."; Pfam "[BolA] BolA-like protein"; similar_genes "(1)BOLA3_HUMAN(e-value:6.7e-08;bit-score:55.0)(2,3)BOLA3_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 2285923 2285997 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.2"; Scaffold003 rebuild exon 2286126 2286214 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.2"; Scaffold003 rebuild exon 2286308 2286511 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.2"; Scaffold003 rebuild exon 2286597 2286702 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.2"; Scaffold003 rebuild transcript 2285923 2286668 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.3"; annotation "hypothetical protein."; Pfam "[BolA] BolA-like protein"; similar_genes "(1)BOLA3_HUMAN(e-value:6.7e-08;bit-score:55.0)(2,3)BOLA3_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 2285923 2285997 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.3"; Scaffold003 rebuild exon 2286126 2286214 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.3"; Scaffold003 rebuild exon 2286308 2286530 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.3"; Scaffold003 rebuild exon 2286597 2286668 . - . gene_id "RvY_07214"; transcript_id "RvY_07214.3"; Scaffold003 rebuild transcript 2287167 2288659 . - . gene_id "RvY_07215"; transcript_id "RvY_07215.1"; gene_name "K01175"; annotation "RNA exonuclease 4"; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold003 rebuild exon 2287167 2287528 . - . gene_id "RvY_07215"; transcript_id "RvY_07215.1"; Scaffold003 rebuild exon 2287671 2287864 . - . gene_id "RvY_07215"; transcript_id "RvY_07215.1"; Scaffold003 rebuild exon 2287932 2288389 . - . gene_id "RvY_07215"; transcript_id "RvY_07215.1"; Scaffold003 rebuild exon 2288453 2288659 . - . gene_id "RvY_07215"; transcript_id "RvY_07215.1"; Scaffold003 rebuild transcript 2289316 2290609 . - . gene_id "RvY_07216"; transcript_id "RvY_07216.1"; gene_name "K00474"; annotation "trimethyllysine dioxygenase [EC:1.14.11.8]"; Pfam "[TauD] Taurine catabolism dioxygenase TauD, TfdA family"; CDD "trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only."; EC "EC1.14.11.8"; KO "K00474"; similar_genes "TMLH_BOVIN(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 2289316 2289441 . - . gene_id "RvY_07216"; transcript_id "RvY_07216.1"; Scaffold003 rebuild exon 2289500 2289838 . - . gene_id "RvY_07216"; transcript_id "RvY_07216.1"; Scaffold003 rebuild exon 2289965 2290609 . - . gene_id "RvY_07216"; transcript_id "RvY_07216.1"; Scaffold003 rebuild transcript 2290918 2291340 . - . gene_id "RvY_07217"; transcript_id "RvY_07217.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2290918 2291340 . - . gene_id "RvY_07217"; transcript_id "RvY_07217.1"; Scaffold003 rebuild transcript 2291367 2291788 . - . gene_id "RvY_07218"; transcript_id "RvY_07218.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2291367 2291471 . - . gene_id "RvY_07218"; transcript_id "RvY_07218.1"; Scaffold003 rebuild exon 2291594 2291788 . - . gene_id "RvY_07218"; transcript_id "RvY_07218.1"; Scaffold003 rebuild transcript 2292523 2293619 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; gene_name "(1)ptpS"; annotation "(1)putative 6-pyruvoyl tetrahydrobiopterin synthase(2)hypothetical protein."; Pfam "[PTPS] 6-pyruvoyl tetrahydropterin synthase"; CDD "(1)6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated Scaffold003 rebuild exon 2292523 2292661 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; Scaffold003 rebuild exon 2292767 2292836 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; Scaffold003 rebuild exon 2292924 2293003 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; Scaffold003 rebuild exon 2293114 2293193 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; Scaffold003 rebuild exon 2293265 2293335 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; Scaffold003 rebuild exon 2293487 2293619 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.1"; Scaffold003 rebuild transcript 2293573 2294031 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.2"; gene_name "(1)ptpS"; annotation "(1)putative 6-pyruvoyl tetrahydrobiopterin synthase(2)hypothetical protein."; Pfam "[PTPS] 6-pyruvoyl tetrahydropterin synthase"; CDD "(1)6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated Scaffold003 rebuild exon 2293573 2294031 . + . gene_id "RvY_07219"; transcript_id "RvY_07219.2"; Scaffold003 rebuild transcript 2294123 2294807 . - . gene_id "RvY_07220"; transcript_id "RvY_07220.1"; gene_name "K00474"; annotation "trimethyllysine dioxygenase [EC:1.14.11.8]"; Pfam "[TauD] Taurine catabolism dioxygenase TauD, TfdA family"; CDD "trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only."; EC "EC1.14.11.8"; KO "K00474"; similar_genes "TMLH_BOVIN(e-value:1.8e-10;bit-score:64.0)"; Scaffold003 rebuild exon 2294123 2294617 . - . gene_id "RvY_07220"; transcript_id "RvY_07220.1"; Scaffold003 rebuild exon 2294676 2294807 . - . gene_id "RvY_07220"; transcript_id "RvY_07220.1"; Scaffold003 rebuild transcript 2296347 2297407 . + . gene_id "RvY_07221"; transcript_id "RvY_07221.1"; annotation "hypothetical protein."; Pfam "[DUF788]"; Scaffold003 rebuild exon 2296347 2296352 . + . gene_id "RvY_07221"; transcript_id "RvY_07221.1"; Scaffold003 rebuild exon 2296933 2297031 . + . gene_id "RvY_07221"; transcript_id "RvY_07221.1"; Scaffold003 rebuild exon 2297129 2297188 . + . gene_id "RvY_07221"; transcript_id "RvY_07221.1"; Scaffold003 rebuild exon 2297267 2297407 . + . gene_id "RvY_07221"; transcript_id "RvY_07221.1"; Scaffold003 rebuild transcript 2298298 2299491 . + . gene_id "RvY_07222"; transcript_id "RvY_07222.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2298298 2299491 . + . gene_id "RvY_07222"; transcript_id "RvY_07222.1"; Scaffold003 rebuild transcript 2300637 2300963 . - . gene_id "RvY_07223"; transcript_id "RvY_07223.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2300637 2300963 . - . gene_id "RvY_07223"; transcript_id "RvY_07223.1"; Scaffold003 rebuild transcript 2301569 2304009 . + . gene_id "RvY_07224"; transcript_id "RvY_07224.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2301569 2301606 . + . gene_id "RvY_07224"; transcript_id "RvY_07224.1"; Scaffold003 rebuild exon 2303433 2304009 . + . gene_id "RvY_07224"; transcript_id "RvY_07224.1"; Scaffold003 rebuild transcript 2302373 2302531 . - . gene_id "RvY_07225"; transcript_id "RvY_07225.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2302373 2302531 . - . gene_id "RvY_07225"; transcript_id "RvY_07225.1"; Scaffold003 rebuild transcript 2304956 2318817 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2304956 2305061 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2305152 2305287 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2309252 2309347 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2315127 2315236 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2316136 2316216 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2316442 2317215 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2317456 2318109 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild exon 2318402 2318817 . + . gene_id "RvY_07226"; transcript_id "RvY_07226.1"; Scaffold003 rebuild transcript 2313452 2314175 . - . gene_id "RvY_07227"; transcript_id "RvY_07227.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2313452 2313637 . - . gene_id "RvY_07227"; transcript_id "RvY_07227.1"; Scaffold003 rebuild exon 2314158 2314175 . - . gene_id "RvY_07227"; transcript_id "RvY_07227.1"; Scaffold003 rebuild transcript 2318907 2320199 . + . gene_id "RvY_07228"; transcript_id "RvY_07228.1"; gene_name "zf-MIZ"; annotation "hypothetical protein."; Pfam "[zf-MIZ] MIZ/SP-RING zinc finger"; CDD "MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation."; Scaffold003 rebuild exon 2318907 2319074 . + . gene_id "RvY_07228"; transcript_id "RvY_07228.1"; Scaffold003 rebuild exon 2319167 2319304 . + . gene_id "RvY_07228"; transcript_id "RvY_07228.1"; Scaffold003 rebuild exon 2319369 2319471 . + . gene_id "RvY_07228"; transcript_id "RvY_07228.1"; Scaffold003 rebuild exon 2319542 2319788 . + . gene_id "RvY_07228"; transcript_id "RvY_07228.1"; Scaffold003 rebuild exon 2319974 2320199 . + . gene_id "RvY_07228"; transcript_id "RvY_07228.1"; Scaffold003 rebuild transcript 2320488 2323770 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; gene_name "pccA"; annotation "Propionyl-CoA carboxylase alpha chain, mitochondrial"; Pfam "[Dala_Dala_lig_C] D-ala D-ala ligase C-terminus|[Biotin_carb_C] Biotin carboxylase C-terminal domain|[ATP-grasp]|[ATP-grasp_3] ATP-grasp domain|[ATP-grasp_4] ATP-grasp domain|[CPSase_L_chain] Carbamoyl-phosphate synthase L chain, N-terminal domain|[Biotin_lipoyl_2] Biotin-lipoyl like|[CPSase_L_D2] Carbamoyl-phosphate synthase L chain, ATP binding domain|[Biotin_lipoyl] Biotin-requiring enzyme"; CDD "Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]"; EC "EC6.4.1.3"; KO "K01965"; similar_genes "PCCA_CAEBR(e-value:5.5e-156;bit-score:547.0)"; Scaffold003 rebuild exon 2320488 2320616 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2320685 2320817 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2321034 2321338 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2321396 2321603 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2321821 2322226 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2322420 2322696 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2322761 2322979 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2323056 2323204 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2323289 2323490 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild exon 2323555 2323770 . - . gene_id "RvY_07229"; transcript_id "RvY_07229.1"; Scaffold003 rebuild transcript 2324443 2326525 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; annotation "hypothetical protein."; Pfam "[DUF89] Protein of unknown function DUF89"; similar_genes "(1)CF211_MACFA(e-value:1.4e-18;bit-score:91.0)"; Scaffold003 rebuild exon 2324443 2324736 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; Scaffold003 rebuild exon 2324799 2325269 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; Scaffold003 rebuild exon 2325590 2325764 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; Scaffold003 rebuild exon 2325826 2326115 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; Scaffold003 rebuild exon 2326174 2326339 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; Scaffold003 rebuild exon 2326428 2326525 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.1"; Scaffold003 rebuild transcript 2325491 2326525 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.2"; annotation "hypothetical protein."; Pfam "[DUF89] Protein of unknown function DUF89"; similar_genes "(1)CF211_MACFA(e-value:1.4e-18;bit-score:91.0)"; Scaffold003 rebuild exon 2325491 2325764 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.2"; Scaffold003 rebuild exon 2325826 2326115 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.2"; Scaffold003 rebuild exon 2326174 2326339 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.2"; Scaffold003 rebuild exon 2326428 2326525 . - . gene_id "RvY_07230"; transcript_id "RvY_07230.2"; Scaffold003 rebuild transcript 2327118 2329057 . + . gene_id "RvY_07231"; transcript_id "RvY_07231.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2327118 2327770 . + . gene_id "RvY_07231"; transcript_id "RvY_07231.1"; Scaffold003 rebuild exon 2327842 2328151 . + . gene_id "RvY_07231"; transcript_id "RvY_07231.1"; Scaffold003 rebuild exon 2328238 2328339 . + . gene_id "RvY_07231"; transcript_id "RvY_07231.1"; Scaffold003 rebuild exon 2328474 2328554 . + . gene_id "RvY_07231"; transcript_id "RvY_07231.1"; Scaffold003 rebuild exon 2328617 2329057 . + . gene_id "RvY_07231"; transcript_id "RvY_07231.1"; Scaffold003 rebuild transcript 2329548 2340126 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; annotation "putative MTSS1-like protein"; Pfam "[IMD] IRSp53/MIM homology domain"; similar_genes "MTSSL_MOUSE(e-value:5.3e-48;bit-score:189.0)"; Scaffold003 rebuild exon 2329548 2330161 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2330225 2330530 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2330802 2331077 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2331275 2331851 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2332183 2332413 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2332510 2332688 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2332888 2332962 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2333095 2333186 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2333372 2333456 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2337237 2337310 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2337628 2337689 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild exon 2339926 2340126 . - . gene_id "RvY_07232"; transcript_id "RvY_07232.1"; Scaffold003 rebuild transcript 2335183 2335906 . + . gene_id "RvY_07233"; transcript_id "RvY_07233.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2335183 2335262 . + . gene_id "RvY_07233"; transcript_id "RvY_07233.1"; Scaffold003 rebuild exon 2335741 2335906 . + . gene_id "RvY_07233"; transcript_id "RvY_07233.1"; Scaffold003 rebuild transcript 2340799 2340993 . - . gene_id "RvY_07234"; transcript_id "RvY_07234.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2340799 2340993 . - . gene_id "RvY_07234"; transcript_id "RvY_07234.1"; Scaffold003 rebuild transcript 2341776 2342122 . - . gene_id "RvY_07235"; transcript_id "RvY_07235.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2341776 2341921 . - . gene_id "RvY_07235"; transcript_id "RvY_07235.1"; Scaffold003 rebuild exon 2342041 2342122 . - . gene_id "RvY_07235"; transcript_id "RvY_07235.1"; Scaffold003 rebuild transcript 2342791 2343363 . + . gene_id "RvY_07236"; transcript_id "RvY_07236.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2342791 2343363 . + . gene_id "RvY_07236"; transcript_id "RvY_07236.1"; Scaffold003 rebuild transcript 2343593 2344513 . - . gene_id "RvY_07237"; transcript_id "RvY_07237.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2343593 2343718 . - . gene_id "RvY_07237"; transcript_id "RvY_07237.1"; Scaffold003 rebuild exon 2344493 2344513 . - . gene_id "RvY_07237"; transcript_id "RvY_07237.1"; Scaffold003 rebuild transcript 2344283 2345020 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2344283 2344597 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.1"; Scaffold003 rebuild exon 2344663 2344791 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.1"; Scaffold003 rebuild exon 2344865 2345020 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.1"; Scaffold003 rebuild transcript 2344283 2344923 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2344283 2344597 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.2"; Scaffold003 rebuild exon 2344663 2344923 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.2"; Scaffold003 rebuild transcript 2344283 2344636 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2344283 2344636 . + . gene_id "RvY_07238"; transcript_id "RvY_07238.3"; Scaffold003 rebuild transcript 2347218 2347490 . - . gene_id "RvY_07239"; transcript_id "RvY_07239.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2347218 2347490 . - . gene_id "RvY_07239"; transcript_id "RvY_07239.1"; Scaffold003 rebuild transcript 2351437 2352098 . + . gene_id "RvY_07240"; transcript_id "RvY_07240.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2351437 2351821 . + . gene_id "RvY_07240"; transcript_id "RvY_07240.1"; Scaffold003 rebuild exon 2351906 2352000 . + . gene_id "RvY_07240"; transcript_id "RvY_07240.1"; Scaffold003 rebuild exon 2352084 2352098 . + . gene_id "RvY_07240"; transcript_id "RvY_07240.1"; Scaffold003 rebuild transcript 2353099 2356252 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; annotation "hypothetical protein."; Pfam "[Fasciclin]"; Scaffold003 rebuild exon 2353099 2353254 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2353317 2353439 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2353541 2353674 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2353745 2354001 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2354191 2354354 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2354424 2354886 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2354961 2355170 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2355251 2355558 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2355618 2355951 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild exon 2356041 2356252 . + . gene_id "RvY_07241"; transcript_id "RvY_07241.1"; Scaffold003 rebuild transcript 2356412 2361700 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; gene_name "NID"; annotation "putative Nidogen-2"; Pfam "[Ldl_recept_b] Low-density lipoprotein receptor repeat class B|[EGF_3] EGF domain|[cEGF] Complement Clr-like EGF-like|[EGF_MSP1_1] MSP1 EGF domain 1|[G2F]|[EGF_CA] Calcium-binding EGF domain|[SGL] SMP-30/Gluconolaconase/LRE-like region|[NIDO] Nidogen-like"; CDD "Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria."; KO "K06826"; similar_genes "NID2_HUMAN(e-value:5.9e-26;bit-score:115.0)"; Scaffold003 rebuild exon 2356412 2356530 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2356615 2356730 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2356798 2356921 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2357001 2357158 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2357232 2357406 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2357486 2357725 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2357794 2357943 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2358073 2358210 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2358281 2358421 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2358494 2358628 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2358688 2358831 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2358902 2359123 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2359194 2359394 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2359467 2359700 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2359774 2359965 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2360040 2360284 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2360349 2360554 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2360633 2360774 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2360855 2360994 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild exon 2361482 2361700 . - . gene_id "RvY_07242"; transcript_id "RvY_07242.1"; Scaffold003 rebuild transcript 2362816 2365102 . + . gene_id "RvY_07243"; transcript_id "RvY_07243.1"; gene_name "MA3"; annotation "hypothetical protein."; Pfam "[MA3]"; CDD "MA3 domain. Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains."; Scaffold003 rebuild exon 2362816 2363304 . + . gene_id "RvY_07243"; transcript_id "RvY_07243.1"; Scaffold003 rebuild exon 2363759 2364338 . + . gene_id "RvY_07243"; transcript_id "RvY_07243.1"; Scaffold003 rebuild exon 2364642 2365102 . + . gene_id "RvY_07243"; transcript_id "RvY_07243.1"; Scaffold003 rebuild transcript 2365511 2367151 . - . gene_id "RvY_07244"; transcript_id "RvY_07244.1"; gene_name "UGT72E"; annotation "coniferyl-alcohol glucosyltransferase [EC:2.4.1.111]"; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.-|EC2.4.1.111"; KO "K12356"; similar_genes "UGAGT_ARATH(e-value:1.6e-13;bit-score:74.0)"; Scaffold003 rebuild exon 2365511 2366514 . - . gene_id "RvY_07244"; transcript_id "RvY_07244.1"; Scaffold003 rebuild exon 2366737 2367151 . - . gene_id "RvY_07244"; transcript_id "RvY_07244.1"; Scaffold003 rebuild transcript 2368360 2370399 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2368360 2368982 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; Scaffold003 rebuild exon 2369047 2369140 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; Scaffold003 rebuild exon 2369216 2369363 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; Scaffold003 rebuild exon 2369561 2369708 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; Scaffold003 rebuild exon 2369960 2370153 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; Scaffold003 rebuild exon 2370353 2370399 . + . gene_id "RvY_07245"; transcript_id "RvY_07245.1"; Scaffold003 rebuild transcript 2370949 2373464 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2370949 2371029 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; Scaffold003 rebuild exon 2371114 2371230 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; Scaffold003 rebuild exon 2371327 2371617 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; Scaffold003 rebuild exon 2371951 2372288 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; Scaffold003 rebuild exon 2372438 2372710 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; Scaffold003 rebuild exon 2372789 2373464 . - . gene_id "RvY_07246"; transcript_id "RvY_07246.1"; Scaffold003 rebuild transcript 2373632 2374305 . - . gene_id "RvY_07247"; transcript_id "RvY_07247.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2373632 2373775 . - . gene_id "RvY_07247"; transcript_id "RvY_07247.1"; Scaffold003 rebuild exon 2374114 2374305 . - . gene_id "RvY_07247"; transcript_id "RvY_07247.1"; Scaffold003 rebuild transcript 2375493 2376015 . + . gene_id "RvY_07248"; transcript_id "RvY_07248.1"; annotation "hypothetical protein."; Pfam "[Endosulfine] cAMP-regulated phosphoprotein/endosulfine conserved region"; Scaffold003 rebuild exon 2375493 2375598 . + . gene_id "RvY_07248"; transcript_id "RvY_07248.1"; Scaffold003 rebuild exon 2375681 2376015 . + . gene_id "RvY_07248"; transcript_id "RvY_07248.1"; Scaffold003 rebuild transcript 2376794 2377473 . - . gene_id "RvY_07249"; transcript_id "RvY_07249.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2376794 2377084 . - . gene_id "RvY_07249"; transcript_id "RvY_07249.1"; Scaffold003 rebuild exon 2377468 2377473 . - . gene_id "RvY_07249"; transcript_id "RvY_07249.1"; Scaffold003 rebuild transcript 2378571 2381456 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; gene_name "CDC2L"; annotation "Cell division protein kinase 11"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 subfamily. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM)."; EC "EC2.7.11.22"; KO "K08818"; similar_genes "CDK11_MOUSE(e-value:3.3e-126;bit-score:448.0)"; Scaffold003 rebuild exon 2378571 2378624 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild exon 2378698 2378860 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild exon 2378996 2379856 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild exon 2380043 2380697 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild exon 2380839 2381058 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild exon 2381153 2381262 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild exon 2381336 2381456 . + . gene_id "RvY_07250"; transcript_id "RvY_07250.1"; Scaffold003 rebuild transcript 2381936 2384867 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; annotation "hypothetical protein."; Pfam "[Asx-hm] Transcriptional enhancer, Asx-hm domain"; Scaffold003 rebuild exon 2381936 2382026 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2382097 2382956 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2383193 2383684 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2383919 2384072 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2384142 2384245 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2384307 2384416 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2384537 2384716 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild exon 2384786 2384867 . + . gene_id "RvY_07251"; transcript_id "RvY_07251.1"; Scaffold003 rebuild transcript 2386030 2390628 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2386030 2386312 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2387293 2387361 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2387430 2387511 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2387726 2387922 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2388602 2388672 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2389093 2389386 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2389685 2389923 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild exon 2390580 2390628 . - . gene_id "RvY_07252"; transcript_id "RvY_07252.1"; Scaffold003 rebuild transcript 2392572 2394137 . + . gene_id "RvY_07253"; transcript_id "RvY_07253.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2392572 2393505 . + . gene_id "RvY_07253"; transcript_id "RvY_07253.1"; Scaffold003 rebuild exon 2393740 2394137 . + . gene_id "RvY_07253"; transcript_id "RvY_07253.1"; Scaffold003 rebuild transcript 2394293 2395568 . + . gene_id "RvY_07254"; transcript_id "RvY_07254.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2394293 2394394 . + . gene_id "RvY_07254"; transcript_id "RvY_07254.1"; Scaffold003 rebuild exon 2394498 2394619 . + . gene_id "RvY_07254"; transcript_id "RvY_07254.1"; Scaffold003 rebuild exon 2394697 2395014 . + . gene_id "RvY_07254"; transcript_id "RvY_07254.1"; Scaffold003 rebuild exon 2395220 2395568 . + . gene_id "RvY_07254"; transcript_id "RvY_07254.1"; Scaffold003 rebuild transcript 2395777 2396878 . + . gene_id "RvY_07255"; transcript_id "RvY_07255.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold003 rebuild exon 2395777 2396253 . + . gene_id "RvY_07255"; transcript_id "RvY_07255.1"; Scaffold003 rebuild exon 2396438 2396500 . + . gene_id "RvY_07255"; transcript_id "RvY_07255.1"; Scaffold003 rebuild exon 2396564 2396878 . + . gene_id "RvY_07255"; transcript_id "RvY_07255.1"; Scaffold003 rebuild transcript 2397143 2401163 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; annotation "hypothetical protein."; Pfam "[A2M_comp] A-macroglobulin complement component|[A2M_N_2] Alpha-2-macroglobulin family N-terminal region|[A2M_recep] A-macroglobulin receptor|[A2M] Alpha-2-macroglobulin family"; Scaffold003 rebuild exon 2397143 2397283 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2397350 2397709 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2397874 2398053 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2398145 2398386 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2398458 2398749 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2398817 2399089 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2399116 2399354 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2399549 2400173 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild exon 2400456 2401163 . - . gene_id "RvY_07256"; transcript_id "RvY_07256.1"; Scaffold003 rebuild transcript 2401388 2402903 . - . gene_id "RvY_07257"; transcript_id "RvY_07257.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2401388 2401696 . - . gene_id "RvY_07257"; transcript_id "RvY_07257.1"; Scaffold003 rebuild exon 2401813 2402043 . - . gene_id "RvY_07257"; transcript_id "RvY_07257.1"; Scaffold003 rebuild exon 2402108 2402231 . - . gene_id "RvY_07257"; transcript_id "RvY_07257.1"; Scaffold003 rebuild exon 2402623 2402903 . - . gene_id "RvY_07257"; transcript_id "RvY_07257.1"; Scaffold003 rebuild transcript 2405909 2406589 . - . gene_id "RvY_07258"; transcript_id "RvY_07258.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2405909 2406145 . - . gene_id "RvY_07258"; transcript_id "RvY_07258.1"; Scaffold003 rebuild exon 2406224 2406376 . - . gene_id "RvY_07258"; transcript_id "RvY_07258.1"; Scaffold003 rebuild exon 2406557 2406589 . - . gene_id "RvY_07258"; transcript_id "RvY_07258.1"; Scaffold003 rebuild transcript 2407864 2408052 . + . gene_id "RvY_07259"; transcript_id "RvY_07259.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2407864 2408052 . + . gene_id "RvY_07259"; transcript_id "RvY_07259.1"; Scaffold003 rebuild transcript 2408055 2409172 . - . gene_id "RvY_07260"; transcript_id "RvY_07260.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2408055 2408165 . - . gene_id "RvY_07260"; transcript_id "RvY_07260.1"; Scaffold003 rebuild exon 2408235 2408432 . - . gene_id "RvY_07260"; transcript_id "RvY_07260.1"; Scaffold003 rebuild exon 2408492 2408968 . - . gene_id "RvY_07260"; transcript_id "RvY_07260.1"; Scaffold003 rebuild exon 2409059 2409172 . - . gene_id "RvY_07260"; transcript_id "RvY_07260.1"; Scaffold003 rebuild transcript 2409610 2410953 . - . gene_id "RvY_07261"; transcript_id "RvY_07261.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2409610 2410953 . - . gene_id "RvY_07261"; transcript_id "RvY_07261.1"; Scaffold003 rebuild transcript 2412704 2415098 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; gene_name "COG5273"; annotation "hypothetical protein."; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "(1)ZDHC8_CANFA(e-value:5.9e-09;bit-score:59.0)(2)ZDHC5_CANFA(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 2412704 2413579 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; Scaffold003 rebuild exon 2413894 2414032 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; Scaffold003 rebuild exon 2414144 2414235 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; Scaffold003 rebuild exon 2414304 2414406 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; Scaffold003 rebuild exon 2414493 2414649 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; Scaffold003 rebuild exon 2415041 2415098 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.1"; Scaffold003 rebuild transcript 2412704 2415133 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; gene_name "COG5273"; annotation "hypothetical protein."; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "(1)ZDHC8_CANFA(e-value:5.9e-09;bit-score:59.0)(2)ZDHC5_CANFA(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 2412704 2413579 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; Scaffold003 rebuild exon 2413894 2414032 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; Scaffold003 rebuild exon 2414144 2414235 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; Scaffold003 rebuild exon 2414304 2414406 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; Scaffold003 rebuild exon 2414493 2414649 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; Scaffold003 rebuild exon 2415124 2415133 . - . gene_id "RvY_07262"; transcript_id "RvY_07262.2"; Scaffold003 rebuild transcript 2416195 2416901 . + . gene_id "RvY_07263"; transcript_id "RvY_07263.1"; gene_name "RP-L28e"; annotation "large subunit ribosomal protein L28e"; Pfam "[Ribosomal_L28e] Ribosomal L28e protein family"; CDD "Ribosomal L28e protein family."; KO "K02903"; Scaffold003 rebuild exon 2416195 2416284 . + . gene_id "RvY_07263"; transcript_id "RvY_07263.1"; Scaffold003 rebuild exon 2416357 2416480 . + . gene_id "RvY_07263"; transcript_id "RvY_07263.1"; Scaffold003 rebuild exon 2416582 2416700 . + . gene_id "RvY_07263"; transcript_id "RvY_07263.1"; Scaffold003 rebuild exon 2416800 2416901 . + . gene_id "RvY_07263"; transcript_id "RvY_07263.1"; Scaffold003 rebuild transcript 2417792 2418004 . - . gene_id "RvY_07264"; transcript_id "RvY_07264.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2417792 2418004 . - . gene_id "RvY_07264"; transcript_id "RvY_07264.1"; Scaffold003 rebuild transcript 2418386 2418709 . - . gene_id "RvY_07265"; transcript_id "RvY_07265.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2418386 2418709 . - . gene_id "RvY_07265"; transcript_id "RvY_07265.1"; Scaffold003 rebuild transcript 2418383 2418622 . - . gene_id "RvY_07265"; transcript_id "RvY_07265.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2418383 2418622 . - . gene_id "RvY_07265"; transcript_id "RvY_07265.2"; Scaffold003 rebuild transcript 2422490 2423998 . + . gene_id "RvY_07266"; transcript_id "RvY_07266.1"; gene_name "KCNAB1"; annotation "potassium voltage-gated channel, Shaker-related subfamily A, beta member 1"; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; CDD "voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs."; KO "K04882"; similar_genes "KCAB3_XENLA(e-value:9.5e-18;bit-score:88.0)"; Scaffold003 rebuild exon 2422490 2422524 . + . gene_id "RvY_07266"; transcript_id "RvY_07266.1"; Scaffold003 rebuild exon 2422651 2422695 . + . gene_id "RvY_07266"; transcript_id "RvY_07266.1"; Scaffold003 rebuild exon 2422774 2422901 . + . gene_id "RvY_07266"; transcript_id "RvY_07266.1"; Scaffold003 rebuild exon 2423170 2423376 . + . gene_id "RvY_07266"; transcript_id "RvY_07266.1"; Scaffold003 rebuild exon 2423469 2423998 . + . gene_id "RvY_07266"; transcript_id "RvY_07266.1"; Scaffold003 rebuild transcript 2424597 2426012 . - . gene_id "RvY_07267"; transcript_id "RvY_07267.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2424597 2424945 . - . gene_id "RvY_07267"; transcript_id "RvY_07267.1"; Scaffold003 rebuild exon 2425290 2425556 . - . gene_id "RvY_07267"; transcript_id "RvY_07267.1"; Scaffold003 rebuild exon 2425630 2425834 . - . gene_id "RvY_07267"; transcript_id "RvY_07267.1"; Scaffold003 rebuild exon 2425913 2426012 . - . gene_id "RvY_07267"; transcript_id "RvY_07267.1"; Scaffold003 rebuild transcript 2426954 2428798 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; gene_name "Pancreat_lipase_like"; annotation "hypothetical protein."; Pfam "[Lipase]|[Abhydrolase_6] Alpha/beta hydrolase family"; CDD "Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold003 rebuild exon 2426954 2427086 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2427168 2427237 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2427306 2427501 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2427584 2427777 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2427841 2427914 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2427980 2428039 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2428691 2428720 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild exon 2428797 2428798 . + . gene_id "RvY_07268"; transcript_id "RvY_07268.1"; Scaffold003 rebuild transcript 2429145 2430334 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; annotation "hypothetical protein."; Pfam "[Lipase]"; Scaffold003 rebuild exon 2429145 2429166 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2429236 2429292 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2429364 2429422 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2429505 2429634 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2429716 2429765 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2429825 2429898 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2429979 2430173 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild exon 2430262 2430334 . + . gene_id "RvY_07269"; transcript_id "RvY_07269.1"; Scaffold003 rebuild transcript 2430634 2431995 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.1"; annotation "hypothetical protein."; Pfam "[EF_hand_3] EF hand|[EF_hand_5] EF-hand domain pair"; Scaffold003 rebuild exon 2430634 2430861 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.1"; Scaffold003 rebuild exon 2430947 2431098 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.1"; Scaffold003 rebuild exon 2431178 2431311 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.1"; Scaffold003 rebuild exon 2431598 2431788 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.1"; Scaffold003 rebuild exon 2431867 2431995 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.1"; Scaffold003 rebuild transcript 2430634 2431995 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.2"; annotation "hypothetical protein."; Pfam "[EF_hand_3] EF hand|[EF_hand_5] EF-hand domain pair"; Scaffold003 rebuild exon 2430634 2430861 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.2"; Scaffold003 rebuild exon 2430947 2431098 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.2"; Scaffold003 rebuild exon 2431178 2431311 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.2"; Scaffold003 rebuild exon 2431691 2431788 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.2"; Scaffold003 rebuild exon 2431867 2431995 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.2"; Scaffold003 rebuild transcript 2430410 2431039 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.3"; annotation "hypothetical protein."; Pfam "[EF_hand_3] EF hand|[EF_hand_5] EF-hand domain pair"; Scaffold003 rebuild exon 2430410 2430586 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.3"; Scaffold003 rebuild exon 2430658 2430861 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.3"; Scaffold003 rebuild exon 2430947 2431039 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.3"; Scaffold003 rebuild transcript 2431896 2432360 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.4"; annotation "hypothetical protein."; Pfam "[EF_hand_3] EF hand|[EF_hand_5] EF-hand domain pair"; Scaffold003 rebuild exon 2431896 2432360 . - . gene_id "RvY_07270"; transcript_id "RvY_07270.4"; Scaffold003 rebuild transcript 2436767 2437087 . - . gene_id "RvY_07271"; transcript_id "RvY_07271.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2436767 2437087 . - . gene_id "RvY_07271"; transcript_id "RvY_07271.1"; Scaffold003 rebuild transcript 2440040 2440514 . + . gene_id "RvY_07272"; transcript_id "RvY_07272.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2440040 2440109 . + . gene_id "RvY_07272"; transcript_id "RvY_07272.1"; Scaffold003 rebuild exon 2440207 2440514 . + . gene_id "RvY_07272"; transcript_id "RvY_07272.1"; Scaffold003 rebuild transcript 2440844 2441762 . - . gene_id "RvY_07273"; transcript_id "RvY_07273.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2440844 2441572 . - . gene_id "RvY_07273"; transcript_id "RvY_07273.1"; Scaffold003 rebuild exon 2441655 2441762 . - . gene_id "RvY_07273"; transcript_id "RvY_07273.1"; Scaffold003 rebuild transcript 2442433 2443038 . + . gene_id "RvY_07274"; transcript_id "RvY_07274.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2442433 2443038 . + . gene_id "RvY_07274"; transcript_id "RvY_07274.1"; Scaffold003 rebuild transcript 2442498 2443052 . - . gene_id "RvY_07275"; transcript_id "RvY_07275.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2442498 2443052 . - . gene_id "RvY_07275"; transcript_id "RvY_07275.1"; Scaffold003 rebuild transcript 2444026 2444541 . - . gene_id "RvY_07276"; transcript_id "RvY_07276.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2444026 2444541 . - . gene_id "RvY_07276"; transcript_id "RvY_07276.1"; Scaffold003 rebuild transcript 2445350 2445802 . - . gene_id "RvY_07277"; transcript_id "RvY_07277.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2445350 2445802 . - . gene_id "RvY_07277"; transcript_id "RvY_07277.1"; Scaffold003 rebuild transcript 2448603 2449562 . + . gene_id "RvY_07278"; transcript_id "RvY_07278.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2448603 2449562 . + . gene_id "RvY_07278"; transcript_id "RvY_07278.1"; Scaffold003 rebuild transcript 2449707 2452232 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.1"; gene_name "(1,2)K00103"; annotation "(1,2)L-gulonolactone oxidase [EC:1.1.3.8](3)hypothetical protein."; Pfam "(1,2)[ALO] D-arabinono-1,4-lactone oxidase|[FAD_binding_4] FAD binding domain"; EC "(1,2)EC1.1.3.8"; KO "(1,2)K00103"; Scaffold003 rebuild exon 2449707 2450088 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.1"; Scaffold003 rebuild exon 2450559 2451174 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.1"; Scaffold003 rebuild exon 2451362 2451787 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.1"; Scaffold003 rebuild exon 2452034 2452232 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.1"; Scaffold003 rebuild transcript 2449707 2452518 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.2"; gene_name "(1,2)K00103"; annotation "(1,2)L-gulonolactone oxidase [EC:1.1.3.8](3)hypothetical protein."; Pfam "(1,2)[ALO] D-arabinono-1,4-lactone oxidase|[FAD_binding_4] FAD binding domain"; EC "(1,2)EC1.1.3.8"; KO "(1,2)K00103"; Scaffold003 rebuild exon 2449707 2450088 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.2"; Scaffold003 rebuild exon 2450559 2451174 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.2"; Scaffold003 rebuild exon 2451362 2451787 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.2"; Scaffold003 rebuild exon 2452034 2452161 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.2"; Scaffold003 rebuild exon 2452487 2452518 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.2"; Scaffold003 rebuild transcript 2451060 2452518 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.3"; gene_name "(1,2)K00103"; annotation "(1,2)L-gulonolactone oxidase [EC:1.1.3.8](3)hypothetical protein."; Pfam "(1,2)[ALO] D-arabinono-1,4-lactone oxidase|[FAD_binding_4] FAD binding domain"; EC "(1,2)EC1.1.3.8"; KO "(1,2)K00103"; Scaffold003 rebuild exon 2451060 2451787 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.3"; Scaffold003 rebuild exon 2452034 2452161 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.3"; Scaffold003 rebuild exon 2452487 2452518 . - . gene_id "RvY_07279"; transcript_id "RvY_07279.3"; Scaffold003 rebuild transcript 2453784 2454791 . + . gene_id "RvY_07280"; transcript_id "RvY_07280.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2453784 2454791 . + . gene_id "RvY_07280"; transcript_id "RvY_07280.1"; Scaffold003 rebuild transcript 2455138 2455347 . + . gene_id "RvY_07281"; transcript_id "RvY_07281.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2455138 2455347 . + . gene_id "RvY_07281"; transcript_id "RvY_07281.1"; Scaffold003 rebuild transcript 2455499 2456363 . + . gene_id "RvY_07282"; transcript_id "RvY_07282.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2455499 2455613 . + . gene_id "RvY_07282"; transcript_id "RvY_07282.1"; Scaffold003 rebuild exon 2455789 2456363 . + . gene_id "RvY_07282"; transcript_id "RvY_07282.1"; Scaffold003 rebuild transcript 2456856 2457251 . + . gene_id "RvY_07283"; transcript_id "RvY_07283.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2456856 2457251 . + . gene_id "RvY_07283"; transcript_id "RvY_07283.1"; Scaffold003 rebuild transcript 2457907 2458269 . - . gene_id "RvY_07284"; transcript_id "RvY_07284.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2457907 2458269 . - . gene_id "RvY_07284"; transcript_id "RvY_07284.1"; Scaffold003 rebuild transcript 2457985 2458812 . + . gene_id "RvY_07285"; transcript_id "RvY_07285.1"; annotation "hypothetical protein."; similar_genes "CAC1E_DISOM(e-value:2.8e-15;bit-score:80.0)"; Scaffold003 rebuild exon 2457985 2458308 . + . gene_id "RvY_07285"; transcript_id "RvY_07285.1"; Scaffold003 rebuild exon 2458708 2458812 . + . gene_id "RvY_07285"; transcript_id "RvY_07285.1"; Scaffold003 rebuild transcript 2458911 2460365 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; annotation "putative Voltage-dependent P/Q-type calcium channel subunit alpha-1A"; Pfam "[Ion_trans] Ion transport protein"; similar_genes "CAC1A_HUMAN(e-value:8.1e-49;bit-score:191.0)"; Scaffold003 rebuild exon 2458911 2459028 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild exon 2459097 2459305 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild exon 2459402 2459505 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild exon 2459578 2459693 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild exon 2459931 2459990 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild exon 2460056 2460202 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild exon 2460292 2460365 . + . gene_id "RvY_07286"; transcript_id "RvY_07286.1"; Scaffold003 rebuild transcript 2460494 2468200 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; gene_name "(1,3)CACNA1N"; annotation "Probable voltage-dependent N-type calcium channel subunit alpha-1B"; Pfam "[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "(1,3)K05315"; similar_genes "CAC1B_DISOM(e-value:3.4e-128;bit-score:455.0)"; Scaffold003 rebuild exon 2460494 2460605 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2460685 2461042 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2461206 2461399 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2461618 2461909 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2461972 2462208 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2462275 2462464 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2462537 2462643 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2462735 2462998 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2463066 2463209 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2463274 2463475 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2463552 2463716 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2463926 2464036 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2464570 2464836 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2465023 2465265 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2465343 2465470 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2465537 2465757 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2465834 2465962 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2466144 2466259 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2466489 2466512 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2466805 2466941 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2467020 2467366 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2467426 2467729 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild exon 2467909 2468200 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.1"; Scaffold003 rebuild transcript 2460494 2468200 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; gene_name "(1,3)CACNA1N"; annotation "Probable voltage-dependent N-type calcium channel subunit alpha-1B"; Pfam "[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "(1,3)K05315"; similar_genes "CAC1B_DISOM(e-value:3.4e-128;bit-score:455.0)"; Scaffold003 rebuild exon 2460494 2460605 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2460685 2461042 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2461206 2461399 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2461618 2461909 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2461972 2462208 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2462275 2462464 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2462537 2462643 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2462735 2462998 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2463066 2463209 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2463274 2463475 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2463552 2463716 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2463926 2464036 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2464570 2464836 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2465023 2465265 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2465343 2465470 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2465537 2465757 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2465834 2465962 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2466144 2466259 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2466805 2466941 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2467020 2467366 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2467426 2467729 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild exon 2467909 2468200 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.2"; Scaffold003 rebuild transcript 2460494 2466400 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; gene_name "(1,3)CACNA1N"; annotation "Probable voltage-dependent N-type calcium channel subunit alpha-1B"; Pfam "[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "(1,3)K05315"; similar_genes "CAC1B_DISOM(e-value:3.4e-128;bit-score:455.0)"; Scaffold003 rebuild exon 2460494 2460605 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2460685 2461042 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2461206 2461399 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2461618 2461909 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2461972 2462208 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2462275 2462464 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2462537 2462643 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2462735 2462998 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2463066 2463209 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2463274 2463475 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2463552 2463716 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2463926 2464036 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2464570 2464836 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2465023 2465265 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2465343 2465470 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2465537 2465757 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2465834 2465962 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild exon 2466144 2466400 . + . gene_id "RvY_07287"; transcript_id "RvY_07287.3"; Scaffold003 rebuild transcript 2469115 2473896 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; similar_genes "SO4C1_MOUSE(e-value:2.0e-07;bit-score:54.0)"; Scaffold003 rebuild exon 2469115 2469275 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2469340 2469377 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2469460 2469484 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2469572 2469693 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2469759 2470073 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2470140 2470175 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2470245 2470331 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2470405 2470508 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2470581 2470734 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2470794 2470883 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2471109 2471210 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2472261 2472426 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2472490 2472634 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2472717 2473009 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2473090 2473154 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2473422 2473600 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild exon 2473672 2473896 . + . gene_id "RvY_07288"; transcript_id "RvY_07288.1"; Scaffold003 rebuild transcript 2474837 2475202 . - . gene_id "RvY_07289"; transcript_id "RvY_07289.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2474837 2475202 . - . gene_id "RvY_07289"; transcript_id "RvY_07289.1"; Scaffold003 rebuild transcript 2477226 2478032 . + . gene_id "RvY_07290"; transcript_id "RvY_07290.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 2477226 2477650 . + . gene_id "RvY_07290"; transcript_id "RvY_07290.1"; Scaffold003 rebuild exon 2477735 2478032 . + . gene_id "RvY_07290"; transcript_id "RvY_07290.1"; Scaffold003 rebuild transcript 2480572 2481531 . + . gene_id "RvY_07291"; transcript_id "RvY_07291.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_21] Methyltransferase FkbM domain|[Methyltransf_22] Methyltransferase domain"; Scaffold003 rebuild exon 2480572 2481531 . + . gene_id "RvY_07291"; transcript_id "RvY_07291.1"; Scaffold003 rebuild transcript 2480066 2481531 . + . gene_id "RvY_07291"; transcript_id "RvY_07291.2"; annotation "hypothetical protein."; Pfam "[Methyltransf_21] Methyltransferase FkbM domain|[Methyltransf_22] Methyltransferase domain"; Scaffold003 rebuild exon 2480066 2480102 . + . gene_id "RvY_07291"; transcript_id "RvY_07291.2"; Scaffold003 rebuild exon 2480813 2481531 . + . gene_id "RvY_07291"; transcript_id "RvY_07291.2"; Scaffold003 rebuild transcript 2481729 2482304 . - . gene_id "RvY_07292"; transcript_id "RvY_07292.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2481729 2482304 . - . gene_id "RvY_07292"; transcript_id "RvY_07292.1"; Scaffold003 rebuild transcript 2483750 2485508 . + . gene_id "RvY_07293"; transcript_id "RvY_07293.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 2483750 2483980 . + . gene_id "RvY_07293"; transcript_id "RvY_07293.1"; Scaffold003 rebuild exon 2484060 2484214 . + . gene_id "RvY_07293"; transcript_id "RvY_07293.1"; Scaffold003 rebuild exon 2484365 2484499 . + . gene_id "RvY_07293"; transcript_id "RvY_07293.1"; Scaffold003 rebuild exon 2484763 2485117 . + . gene_id "RvY_07293"; transcript_id "RvY_07293.1"; Scaffold003 rebuild exon 2485230 2485508 . + . gene_id "RvY_07293"; transcript_id "RvY_07293.1"; Scaffold003 rebuild transcript 2486660 2487426 . + . gene_id "RvY_07294"; transcript_id "RvY_07294.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 2486660 2486740 . + . gene_id "RvY_07294"; transcript_id "RvY_07294.1"; Scaffold003 rebuild exon 2486820 2486974 . + . gene_id "RvY_07294"; transcript_id "RvY_07294.1"; Scaffold003 rebuild exon 2487033 2487167 . + . gene_id "RvY_07294"; transcript_id "RvY_07294.1"; Scaffold003 rebuild exon 2487426 2487426 . + . gene_id "RvY_07294"; transcript_id "RvY_07294.1"; Scaffold003 rebuild transcript 2489639 2492755 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; gene_name "fadD9"; annotation "fatty acid CoA ligase FadD9"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]"; EC "EC6.2.1.3"; KO "K12421"; similar_genes "ACSL6_RAT(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 2489639 2490067 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2490469 2490747 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2490937 2491380 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2491468 2491626 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2491705 2491877 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2491945 2492214 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2492304 2492409 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2492484 2492630 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild exon 2492708 2492755 . - . gene_id "RvY_07295"; transcript_id "RvY_07295.1"; Scaffold003 rebuild transcript 2493526 2494713 . - . gene_id "RvY_07296"; transcript_id "RvY_07296.1"; product "CAHS9"; annotation "CAHS9 | hypothetical protein."; Scaffold003 rebuild exon 2493526 2493746 . - . gene_id "RvY_07296"; transcript_id "RvY_07296.1"; Scaffold003 rebuild exon 2493834 2493918 . - . gene_id "RvY_07296"; transcript_id "RvY_07296.1"; Scaffold003 rebuild exon 2494093 2494713 . - . gene_id "RvY_07296"; transcript_id "RvY_07296.1"; Scaffold003 rebuild transcript 2496218 2518016 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; gene_name "UBR4"; annotation "putative E3 ubiquitin-protein ligase UBR4"; Pfam "[E3_UbLigase_R4] E3 ubiquitin-protein ligase UBR4"; CDD "Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10691"; similar_genes "UBR4_MOUSE(e-value:6.6e-40;bit-score:162.0)"; Scaffold003 rebuild exon 2496218 2496903 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2497021 2497174 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2497292 2497493 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2497736 2498659 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2498978 2499522 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2499688 2500206 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2500268 2500398 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2500476 2500905 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2501072 2501343 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2501427 2501721 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2501789 2502114 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2502264 2502902 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2503124 2503741 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2503800 2504122 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2504334 2504693 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2504767 2505015 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2505097 2505692 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2505859 2506207 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2506270 2506474 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2506730 2507091 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2507289 2507713 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2507955 2508455 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2508698 2509279 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2509340 2509886 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2510074 2510565 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2510633 2510931 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2511151 2511483 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2511809 2512330 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2512691 2513057 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2513239 2513717 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2513951 2514206 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2514424 2514758 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2514825 2515118 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2515181 2515492 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2515733 2516136 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2516368 2516762 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2516961 2517202 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild exon 2517267 2518016 . + . gene_id "RvY_07297"; transcript_id "RvY_07297.1"; Scaffold003 rebuild transcript 2518505 2518681 . - . gene_id "RvY_07298"; transcript_id "RvY_07298.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold003 rebuild exon 2518505 2518681 . - . gene_id "RvY_07298"; transcript_id "RvY_07298.1"; Scaffold003 rebuild transcript 2519281 2521464 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.1"; gene_name "CANT1"; annotation "soluble calcium-activated nucleotidase 1 [EC:3.6.1.6]"; Pfam "[Apyrase]"; EC "EC3.6.1.6"; KO "K12304"; similar_genes "CANT1_MOUSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold003 rebuild exon 2519281 2519329 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.1"; Scaffold003 rebuild exon 2520025 2520576 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.1"; Scaffold003 rebuild exon 2520646 2520761 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.1"; Scaffold003 rebuild exon 2520997 2521464 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.1"; Scaffold003 rebuild transcript 2519759 2521464 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.2"; gene_name "CANT1"; annotation "soluble calcium-activated nucleotidase 1 [EC:3.6.1.6]"; Pfam "[Apyrase]"; EC "EC3.6.1.6"; KO "K12304"; similar_genes "CANT1_MOUSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold003 rebuild exon 2519759 2519768 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.2"; Scaffold003 rebuild exon 2520025 2520576 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.2"; Scaffold003 rebuild exon 2520646 2520761 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.2"; Scaffold003 rebuild exon 2520997 2521464 . + . gene_id "RvY_07299"; transcript_id "RvY_07299.2"; Scaffold003 rebuild transcript 2522954 2525713 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; gene_name "HGS"; annotation "putative Hepatocyte growth factor-regulated tyrosine kinase substrate"; Pfam "[Hrs_helical] Hepatocyte growth factor-regulated tyrosine kinase substrate|[VHS]|[FYVE] FYVE zinc finger"; CDD "VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane."; KO "K12182"; similar_genes "HGS_MOUSE(e-value:5.1e-42;bit-score:169.0)"; Scaffold003 rebuild exon 2522954 2523151 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; Scaffold003 rebuild exon 2523320 2523865 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; Scaffold003 rebuild exon 2523925 2524261 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; Scaffold003 rebuild exon 2524326 2524558 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; Scaffold003 rebuild exon 2524628 2525026 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; Scaffold003 rebuild exon 2525219 2525713 . + . gene_id "RvY_07301"; transcript_id "RvY_07301.1"; Scaffold003 rebuild transcript 2526031 2527448 . + . gene_id "RvY_07302"; transcript_id "RvY_07302.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2526031 2526408 . + . gene_id "RvY_07302"; transcript_id "RvY_07302.1"; Scaffold003 rebuild exon 2527212 2527448 . + . gene_id "RvY_07302"; transcript_id "RvY_07302.1"; Scaffold003 rebuild transcript 2528363 2529277 . - . gene_id "RvY_07303"; transcript_id "RvY_07303.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2528363 2528586 . - . gene_id "RvY_07303"; transcript_id "RvY_07303.1"; Scaffold003 rebuild exon 2528642 2528801 . - . gene_id "RvY_07303"; transcript_id "RvY_07303.1"; Scaffold003 rebuild exon 2528873 2529277 . - . gene_id "RvY_07303"; transcript_id "RvY_07303.1"; Scaffold003 rebuild transcript 2529311 2529669 . - . gene_id "RvY_07304"; transcript_id "RvY_07304.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2529311 2529463 . - . gene_id "RvY_07304"; transcript_id "RvY_07304.1"; Scaffold003 rebuild exon 2529520 2529669 . - . gene_id "RvY_07304"; transcript_id "RvY_07304.1"; Scaffold003 rebuild transcript 2531904 2532395 . - . gene_id "RvY_07305"; transcript_id "RvY_07305.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 2531904 2532395 . - . gene_id "RvY_07305"; transcript_id "RvY_07305.1"; Scaffold003 rebuild transcript 2534576 2536005 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; Scaffold003 rebuild exon 2534576 2534666 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2534744 2534809 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2535047 2535094 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2535269 2535298 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2535399 2535587 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2535647 2535718 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2535785 2535840 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild exon 2535943 2536005 . + . gene_id "RvY_07306"; transcript_id "RvY_07306.1"; Scaffold003 rebuild transcript 2536912 2538086 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; annotation "(1,2,4)hypothetical protein.(3)putative C-1-tetrahydrofolate synthase, cytoplasmic"; Pfam "(3)[THF_DHG_CYH_C] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|(1)[THF_DHG_CYH] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain"; EC "(1,3)EC1.5.1.5"; similar_genes "(1)C1TC_DROME(e-value:8.5e-21;bit-score:98.0)(3)C1TC_DROME(e-value:4.7e-49;bit-score:192.0)"; Scaffold003 rebuild exon 2536912 2537123 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; Scaffold003 rebuild exon 2537298 2537393 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; Scaffold003 rebuild exon 2537539 2537620 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; Scaffold003 rebuild exon 2537693 2537806 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; Scaffold003 rebuild exon 2537869 2538004 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; Scaffold003 rebuild exon 2538073 2538086 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.1"; Scaffold003 rebuild transcript 2536830 2537354 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.2"; annotation "(1,2,4)hypothetical protein.(3)putative C-1-tetrahydrofolate synthase, cytoplasmic"; Pfam "(3)[THF_DHG_CYH_C] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|(1)[THF_DHG_CYH] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain"; EC "(1,3)EC1.5.1.5"; similar_genes "(1)C1TC_DROME(e-value:8.5e-21;bit-score:98.0)(3)C1TC_DROME(e-value:4.7e-49;bit-score:192.0)"; Scaffold003 rebuild exon 2536830 2537354 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.2"; Scaffold003 rebuild transcript 2538083 2538935 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.3"; annotation "(1,2,4)hypothetical protein.(3)putative C-1-tetrahydrofolate synthase, cytoplasmic"; Pfam "(3)[THF_DHG_CYH_C] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|(1)[THF_DHG_CYH] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain"; EC "(1,3)EC1.5.1.5"; similar_genes "(1)C1TC_DROME(e-value:8.5e-21;bit-score:98.0)(3)C1TC_DROME(e-value:4.7e-49;bit-score:192.0)"; Scaffold003 rebuild exon 2538083 2538173 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.3"; Scaffold003 rebuild exon 2538270 2538518 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.3"; Scaffold003 rebuild exon 2538601 2538699 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.3"; Scaffold003 rebuild exon 2538865 2538935 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.3"; Scaffold003 rebuild transcript 2536830 2537354 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.4"; annotation "(1,2,4)hypothetical protein.(3)putative C-1-tetrahydrofolate synthase, cytoplasmic"; Pfam "(3)[THF_DHG_CYH_C] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|(1)[THF_DHG_CYH] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain"; EC "(1,3)EC1.5.1.5"; similar_genes "(1)C1TC_DROME(e-value:8.5e-21;bit-score:98.0)(3)C1TC_DROME(e-value:4.7e-49;bit-score:192.0)"; Scaffold003 rebuild exon 2536830 2537123 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.4"; Scaffold003 rebuild exon 2537298 2537354 . + . gene_id "RvY_07307"; transcript_id "RvY_07307.4"; Scaffold003 rebuild transcript 2539391 2541032 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold003 rebuild exon 2539391 2539648 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild exon 2539711 2539852 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild exon 2539910 2540004 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild exon 2540093 2540252 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild exon 2540370 2540421 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild exon 2540690 2540803 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild exon 2541029 2541032 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.1"; Scaffold003 rebuild transcript 2539581 2540378 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold003 rebuild exon 2539581 2539648 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.2"; Scaffold003 rebuild exon 2539711 2539852 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.2"; Scaffold003 rebuild exon 2539910 2540004 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.2"; Scaffold003 rebuild exon 2540093 2540252 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.2"; Scaffold003 rebuild exon 2540370 2540378 . - . gene_id "RvY_07308"; transcript_id "RvY_07308.2"; Scaffold003 rebuild transcript 2546558 2547372 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2546558 2547033 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.1"; Scaffold003 rebuild exon 2547095 2547177 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.1"; Scaffold003 rebuild exon 2547248 2547295 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.1"; Scaffold003 rebuild exon 2547371 2547372 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.1"; Scaffold003 rebuild transcript 2546558 2547372 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2546558 2546889 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.2"; Scaffold003 rebuild exon 2546947 2547033 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.2"; Scaffold003 rebuild exon 2547095 2547177 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.2"; Scaffold003 rebuild exon 2547248 2547295 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.2"; Scaffold003 rebuild exon 2547371 2547372 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.2"; Scaffold003 rebuild transcript 2546558 2547085 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2546558 2547085 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.3"; Scaffold003 rebuild transcript 2545637 2546857 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2545637 2545889 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.4"; Scaffold003 rebuild exon 2546261 2546312 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.4"; Scaffold003 rebuild exon 2546716 2546857 . - . gene_id "RvY_07309"; transcript_id "RvY_07309.4"; Scaffold003 rebuild transcript 2547589 2547965 . - . gene_id "RvY_07310"; transcript_id "RvY_07310.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2547589 2547599 . - . gene_id "RvY_07310"; transcript_id "RvY_07310.1"; Scaffold003 rebuild exon 2547682 2547778 . - . gene_id "RvY_07310"; transcript_id "RvY_07310.1"; Scaffold003 rebuild exon 2547858 2547965 . - . gene_id "RvY_07310"; transcript_id "RvY_07310.1"; Scaffold003 rebuild transcript 2548832 2549734 . + . gene_id "RvY_07311"; transcript_id "RvY_07311.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2548832 2548897 . + . gene_id "RvY_07311"; transcript_id "RvY_07311.1"; Scaffold003 rebuild exon 2549528 2549734 . + . gene_id "RvY_07311"; transcript_id "RvY_07311.1"; Scaffold003 rebuild transcript 2550364 2551292 . + . gene_id "RvY_07312"; transcript_id "RvY_07312.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2550364 2550472 . + . gene_id "RvY_07312"; transcript_id "RvY_07312.1"; Scaffold003 rebuild exon 2550563 2550956 . + . gene_id "RvY_07312"; transcript_id "RvY_07312.1"; Scaffold003 rebuild exon 2551037 2551292 . + . gene_id "RvY_07312"; transcript_id "RvY_07312.1"; Scaffold003 rebuild transcript 2551569 2552461 . - . gene_id "RvY_07313"; transcript_id "RvY_07313.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2551569 2551673 . - . gene_id "RvY_07313"; transcript_id "RvY_07313.1"; Scaffold003 rebuild exon 2551753 2551792 . - . gene_id "RvY_07313"; transcript_id "RvY_07313.1"; Scaffold003 rebuild exon 2551891 2551919 . - . gene_id "RvY_07313"; transcript_id "RvY_07313.1"; Scaffold003 rebuild exon 2552070 2552289 . - . gene_id "RvY_07313"; transcript_id "RvY_07313.1"; Scaffold003 rebuild exon 2552361 2552461 . - . gene_id "RvY_07313"; transcript_id "RvY_07313.1"; Scaffold003 rebuild transcript 2553401 2556669 . + . gene_id "RvY_07314"; transcript_id "RvY_07314.1"; gene_name "Cas1p"; annotation "putative CAS1 domain-containing protein 1"; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p|[Cas1_AcylT] 10 TM Acyl Transferase domain found in Cas1p"; CDD "Cas1p-like protein. The members of this family are sequences that are similar to a region of Cas1p protein. This is an O-acetyltransferase that in Cryptococcus neoformans was shown to be required for O-acetylation of its capsular polysaccharide. The capsule is this organism's most obvious virulence factor."; similar_genes "CASD1_HUMAN(e-value:1.9e-39;bit-score:160.0)"; Scaffold003 rebuild exon 2553401 2553816 . + . gene_id "RvY_07314"; transcript_id "RvY_07314.1"; Scaffold003 rebuild exon 2554093 2554609 . + . gene_id "RvY_07314"; transcript_id "RvY_07314.1"; Scaffold003 rebuild exon 2554671 2555258 . + . gene_id "RvY_07314"; transcript_id "RvY_07314.1"; Scaffold003 rebuild exon 2555500 2555784 . + . gene_id "RvY_07314"; transcript_id "RvY_07314.1"; Scaffold003 rebuild exon 2555845 2556669 . + . gene_id "RvY_07314"; transcript_id "RvY_07314.1"; Scaffold003 rebuild transcript 2558003 2559267 . - . gene_id "RvY_07315"; transcript_id "RvY_07315.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2558003 2558022 . - . gene_id "RvY_07315"; transcript_id "RvY_07315.1"; Scaffold003 rebuild exon 2558307 2558565 . - . gene_id "RvY_07315"; transcript_id "RvY_07315.1"; Scaffold003 rebuild exon 2559100 2559267 . - . gene_id "RvY_07315"; transcript_id "RvY_07315.1"; Scaffold003 rebuild transcript 2558700 2559005 . + . gene_id "RvY_07316"; transcript_id "RvY_07316.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2558700 2559005 . + . gene_id "RvY_07316"; transcript_id "RvY_07316.1"; Scaffold003 rebuild transcript 2560244 2561144 . - . gene_id "RvY_07317"; transcript_id "RvY_07317.1"; gene_name "POLE4"; annotation "DNA polymerase epsilon subunit 4 [EC:2.7.7.7]"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes."; EC "EC2.7.7.7"; KO "K03506"; Scaffold003 rebuild exon 2560244 2560257 . - . gene_id "RvY_07317"; transcript_id "RvY_07317.1"; Scaffold003 rebuild exon 2560330 2560371 . - . gene_id "RvY_07317"; transcript_id "RvY_07317.1"; Scaffold003 rebuild exon 2560472 2560556 . - . gene_id "RvY_07317"; transcript_id "RvY_07317.1"; Scaffold003 rebuild exon 2560785 2561144 . - . gene_id "RvY_07317"; transcript_id "RvY_07317.1"; Scaffold003 rebuild transcript 2561419 2562027 . + . gene_id "RvY_07318"; transcript_id "RvY_07318.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2561419 2561609 . + . gene_id "RvY_07318"; transcript_id "RvY_07318.1"; Scaffold003 rebuild exon 2561856 2562027 . + . gene_id "RvY_07318"; transcript_id "RvY_07318.1"; Scaffold003 rebuild transcript 2562914 2563342 . - . gene_id "RvY_07319"; transcript_id "RvY_07319.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2562914 2563342 . - . gene_id "RvY_07319"; transcript_id "RvY_07319.1"; Scaffold003 rebuild transcript 2563709 2564242 . - . gene_id "RvY_07320"; transcript_id "RvY_07320.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2563709 2564242 . - . gene_id "RvY_07320"; transcript_id "RvY_07320.1"; Scaffold003 rebuild transcript 2564537 2565220 . - . gene_id "RvY_07321"; transcript_id "RvY_07321.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2564537 2565220 . - . gene_id "RvY_07321"; transcript_id "RvY_07321.1"; Scaffold003 rebuild transcript 2565557 2565998 . + . gene_id "RvY_07322"; transcript_id "RvY_07322.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2565557 2565608 . + . gene_id "RvY_07322"; transcript_id "RvY_07322.1"; Scaffold003 rebuild exon 2565694 2565998 . + . gene_id "RvY_07322"; transcript_id "RvY_07322.1"; Scaffold003 rebuild transcript 2566045 2567448 . - . gene_id "RvY_07323"; transcript_id "RvY_07323.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2566045 2567448 . - . gene_id "RvY_07323"; transcript_id "RvY_07323.1"; Scaffold003 rebuild transcript 2572565 2572729 . - . gene_id "RvY_07324"; transcript_id "RvY_07324.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2572565 2572729 . - . gene_id "RvY_07324"; transcript_id "RvY_07324.1"; Scaffold003 rebuild transcript 2572804 2573679 . + . gene_id "RvY_07325"; transcript_id "RvY_07325.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2572804 2572867 . + . gene_id "RvY_07325"; transcript_id "RvY_07325.1"; Scaffold003 rebuild exon 2573078 2573576 . + . gene_id "RvY_07325"; transcript_id "RvY_07325.1"; Scaffold003 rebuild exon 2573643 2573679 . + . gene_id "RvY_07325"; transcript_id "RvY_07325.1"; Scaffold003 rebuild transcript 2578438 2585504 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2578438 2578712 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.1"; Scaffold003 rebuild exon 2579104 2579205 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.1"; Scaffold003 rebuild exon 2581383 2581523 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.1"; Scaffold003 rebuild exon 2584044 2584257 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.1"; Scaffold003 rebuild exon 2585049 2585504 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.1"; Scaffold003 rebuild transcript 2581300 2585474 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2581300 2581523 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.2"; Scaffold003 rebuild exon 2584044 2584257 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.2"; Scaffold003 rebuild exon 2585049 2585474 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.2"; Scaffold003 rebuild transcript 2583961 2585504 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2583961 2584257 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.3"; Scaffold003 rebuild exon 2585049 2585504 . - . gene_id "RvY_07326"; transcript_id "RvY_07326.3"; Scaffold003 rebuild transcript 2588818 2592114 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 2588818 2589024 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; Scaffold003 rebuild exon 2589235 2589791 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; Scaffold003 rebuild exon 2590229 2590760 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; Scaffold003 rebuild exon 2590992 2591058 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; Scaffold003 rebuild exon 2591162 2591931 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; Scaffold003 rebuild exon 2592004 2592114 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.1"; Scaffold003 rebuild transcript 2588818 2591832 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.2"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 2588818 2589024 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.2"; Scaffold003 rebuild exon 2589235 2589791 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.2"; Scaffold003 rebuild exon 2590229 2590760 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.2"; Scaffold003 rebuild exon 2590992 2591058 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.2"; Scaffold003 rebuild exon 2591162 2591832 . - . gene_id "RvY_07327"; transcript_id "RvY_07327.2"; Scaffold003 rebuild transcript 2593175 2594630 . + . gene_id "RvY_07328"; transcript_id "RvY_07328.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2593175 2593237 . + . gene_id "RvY_07328"; transcript_id "RvY_07328.1"; Scaffold003 rebuild exon 2593304 2593609 . + . gene_id "RvY_07328"; transcript_id "RvY_07328.1"; Scaffold003 rebuild exon 2593796 2593862 . + . gene_id "RvY_07328"; transcript_id "RvY_07328.1"; Scaffold003 rebuild exon 2593965 2594366 . + . gene_id "RvY_07328"; transcript_id "RvY_07328.1"; Scaffold003 rebuild exon 2594431 2594630 . + . gene_id "RvY_07328"; transcript_id "RvY_07328.1"; Scaffold003 rebuild transcript 2594738 2595454 . - . gene_id "RvY_07329"; transcript_id "RvY_07329.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2594738 2595454 . - . gene_id "RvY_07329"; transcript_id "RvY_07329.1"; Scaffold003 rebuild transcript 2596662 2597015 . - . gene_id "RvY_07330"; transcript_id "RvY_07330.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2596662 2597015 . - . gene_id "RvY_07330"; transcript_id "RvY_07330.1"; Scaffold003 rebuild transcript 2596820 2597143 . - . gene_id "RvY_07330"; transcript_id "RvY_07330.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2596820 2597143 . - . gene_id "RvY_07330"; transcript_id "RvY_07330.2"; Scaffold003 rebuild transcript 2597861 2600995 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.1"; gene_name "CA"; annotation "hypothetical protein."; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 2597861 2599110 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.1"; Scaffold003 rebuild exon 2599450 2599878 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.1"; Scaffold003 rebuild exon 2600605 2600995 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.1"; Scaffold003 rebuild transcript 2597861 2601038 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.2"; gene_name "CA"; annotation "hypothetical protein."; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 2597861 2599110 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.2"; Scaffold003 rebuild exon 2599450 2599878 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.2"; Scaffold003 rebuild exon 2600605 2600930 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.2"; Scaffold003 rebuild exon 2600998 2601038 . - . gene_id "RvY_07331"; transcript_id "RvY_07331.2"; Scaffold003 rebuild transcript 2601862 2604498 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[CSD] 'Cold-shock' DNA-binding domain"; Scaffold003 rebuild exon 2601862 2602061 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2602133 2602179 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2602401 2602611 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2602671 2602726 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2602788 2602970 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2603032 2603255 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2603318 2603509 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2603598 2603690 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2604119 2604176 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2604250 2604322 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild exon 2604453 2604498 . - . gene_id "RvY_07332"; transcript_id "RvY_07332.1"; Scaffold003 rebuild transcript 2605633 2607629 . + . gene_id "RvY_07333"; transcript_id "RvY_07333.1"; annotation "hypothetical protein."; Pfam "[G-patch]|[FHA]"; Scaffold003 rebuild exon 2605633 2605770 . + . gene_id "RvY_07333"; transcript_id "RvY_07333.1"; Scaffold003 rebuild exon 2605846 2606323 . + . gene_id "RvY_07333"; transcript_id "RvY_07333.1"; Scaffold003 rebuild exon 2606378 2607078 . + . gene_id "RvY_07333"; transcript_id "RvY_07333.1"; Scaffold003 rebuild exon 2607154 2607499 . + . gene_id "RvY_07333"; transcript_id "RvY_07333.1"; Scaffold003 rebuild exon 2607559 2607629 . + . gene_id "RvY_07333"; transcript_id "RvY_07333.1"; Scaffold003 rebuild transcript 2608224 2608560 . + . gene_id "RvY_07334"; transcript_id "RvY_07334.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2608224 2608476 . + . gene_id "RvY_07334"; transcript_id "RvY_07334.1"; Scaffold003 rebuild exon 2608541 2608560 . + . gene_id "RvY_07334"; transcript_id "RvY_07334.1"; Scaffold003 rebuild transcript 2608563 2609177 . + . gene_id "RvY_07335"; transcript_id "RvY_07335.1"; gene_name "(1)APTX"; annotation "(1)aprataxin [EC:3.-.-.-](2)hypothetical protein."; Pfam "[HIT]|[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "(1)aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin."; EC "(1)EC3.-.-.-"; KO "(1)K10863"; similar_genes "(1)BH140_ARATH(e-value:6.2e-15;bit-score:79.0)"; Scaffold003 rebuild exon 2608563 2609177 . + . gene_id "RvY_07335"; transcript_id "RvY_07335.1"; Scaffold003 rebuild transcript 2609158 2609481 . + . gene_id "RvY_07335"; transcript_id "RvY_07335.2"; gene_name "(1)APTX"; annotation "(1)aprataxin [EC:3.-.-.-](2)hypothetical protein."; Pfam "[HIT]|[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "(1)aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin."; EC "(1)EC3.-.-.-"; KO "(1)K10863"; similar_genes "(1)BH140_ARATH(e-value:6.2e-15;bit-score:79.0)"; Scaffold003 rebuild exon 2609158 2609481 . + . gene_id "RvY_07335"; transcript_id "RvY_07335.2"; Scaffold003 rebuild transcript 2610187 2610465 . - . gene_id "RvY_07336"; transcript_id "RvY_07336.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2610187 2610465 . - . gene_id "RvY_07336"; transcript_id "RvY_07336.1"; Scaffold003 rebuild transcript 2611470 2612944 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.1"; annotation "hypothetical protein."; Pfam "[Maelstrom] piRNA pathway germ-plasm component"; Scaffold003 rebuild exon 2611470 2611716 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.1"; Scaffold003 rebuild exon 2611922 2612224 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.1"; Scaffold003 rebuild exon 2612327 2612465 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.1"; Scaffold003 rebuild exon 2612701 2612944 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.1"; Scaffold003 rebuild transcript 2611470 2612817 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.2"; annotation "hypothetical protein."; Pfam "[Maelstrom] piRNA pathway germ-plasm component"; Scaffold003 rebuild exon 2611470 2611716 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.2"; Scaffold003 rebuild exon 2611922 2612224 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.2"; Scaffold003 rebuild exon 2612327 2612465 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.2"; Scaffold003 rebuild exon 2612571 2612640 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.2"; Scaffold003 rebuild exon 2612701 2612817 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.2"; Scaffold003 rebuild transcript 2611539 2612817 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.3"; annotation "hypothetical protein."; Pfam "[Maelstrom] piRNA pathway germ-plasm component"; Scaffold003 rebuild exon 2611539 2611716 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.3"; Scaffold003 rebuild exon 2611922 2612224 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.3"; Scaffold003 rebuild exon 2612327 2612465 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.3"; Scaffold003 rebuild exon 2612571 2612640 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.3"; Scaffold003 rebuild exon 2612701 2612817 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.3"; Scaffold003 rebuild transcript 2611470 2612232 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.4"; annotation "hypothetical protein."; Pfam "[Maelstrom] piRNA pathway germ-plasm component"; Scaffold003 rebuild exon 2611470 2611716 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.4"; Scaffold003 rebuild exon 2611922 2612232 . + . gene_id "RvY_07337"; transcript_id "RvY_07337.4"; Scaffold003 rebuild transcript 2613333 2614159 . + . gene_id "RvY_07338"; transcript_id "RvY_07338.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2613333 2613399 . + . gene_id "RvY_07338"; transcript_id "RvY_07338.1"; Scaffold003 rebuild exon 2613459 2613872 . + . gene_id "RvY_07338"; transcript_id "RvY_07338.1"; Scaffold003 rebuild exon 2613957 2614159 . + . gene_id "RvY_07338"; transcript_id "RvY_07338.1"; Scaffold003 rebuild transcript 2614610 2615099 . - . gene_id "RvY_07339"; transcript_id "RvY_07339.1"; gene_name "SUMO"; annotation "putative Small ubiquitin-related modifier"; Pfam "[ubiquitin] Ubiquitin family|[Rad60-SLD] Ubiquitin-2 like Rad60 SUMO-like"; CDD "Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as ""Smt3"" and ""sentrin"" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases."; KO "K12160"; similar_genes "SUMO_CAEEL(e-value:2.0e-28;bit-score:123.0)"; Scaffold003 rebuild exon 2614610 2614704 . - . gene_id "RvY_07339"; transcript_id "RvY_07339.1"; Scaffold003 rebuild exon 2614786 2614913 . - . gene_id "RvY_07339"; transcript_id "RvY_07339.1"; Scaffold003 rebuild exon 2615008 2615099 . - . gene_id "RvY_07339"; transcript_id "RvY_07339.1"; Scaffold003 rebuild transcript 2615140 2616165 . - . gene_id "RvY_07340"; transcript_id "RvY_07340.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2615140 2615253 . - . gene_id "RvY_07340"; transcript_id "RvY_07340.1"; Scaffold003 rebuild exon 2616070 2616165 . - . gene_id "RvY_07340"; transcript_id "RvY_07340.1"; Scaffold003 rebuild transcript 2616631 2616867 . - . gene_id "RvY_07341"; transcript_id "RvY_07341.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2616631 2616867 . - . gene_id "RvY_07341"; transcript_id "RvY_07341.1"; Scaffold003 rebuild transcript 2616890 2617319 . + . gene_id "RvY_07342"; transcript_id "RvY_07342.1"; gene_name "TCEB2"; annotation "transcription elongation factor B, polypeptide 2"; Pfam "[ubiquitin] Ubiquitin family"; CDD "Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain."; KO "K03873"; Scaffold003 rebuild exon 2616890 2617015 . + . gene_id "RvY_07342"; transcript_id "RvY_07342.1"; Scaffold003 rebuild exon 2617074 2617319 . + . gene_id "RvY_07342"; transcript_id "RvY_07342.1"; Scaffold003 rebuild transcript 2618366 2621154 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; gene_name "CYP2U"; annotation "cytochrome P450, family 2, subfamily U"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07422"; similar_genes "CP2CN_RAT(e-value:4.7e-15;bit-score:79.0)"; Scaffold003 rebuild exon 2618366 2618525 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; Scaffold003 rebuild exon 2619431 2619649 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; Scaffold003 rebuild exon 2619773 2620306 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; Scaffold003 rebuild exon 2620391 2620567 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; Scaffold003 rebuild exon 2620634 2620897 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; Scaffold003 rebuild exon 2620973 2621154 . + . gene_id "RvY_07343"; transcript_id "RvY_07343.1"; Scaffold003 rebuild transcript 2621346 2624523 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; gene_name "LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; CDD "Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; KO "K14319"; Scaffold003 rebuild exon 2621346 2621436 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2621533 2621663 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2622069 2622142 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2622217 2622262 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2622324 2622413 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2622476 2622556 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2622628 2622916 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2622991 2623175 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2623249 2623362 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2623438 2623599 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2623684 2623998 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2624079 2624138 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2624227 2624354 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild exon 2624439 2624523 . - . gene_id "RvY_07344"; transcript_id "RvY_07344.1"; Scaffold003 rebuild transcript 2625176 2625379 . + . gene_id "RvY_07345"; transcript_id "RvY_07345.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2625176 2625379 . + . gene_id "RvY_07345"; transcript_id "RvY_07345.1"; Scaffold003 rebuild transcript 2626832 2627837 . - . gene_id "RvY_07346"; transcript_id "RvY_07346.1"; gene_name "(1)MIP"; annotation "hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "(1)Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms."; Scaffold003 rebuild exon 2626832 2627169 . - . gene_id "RvY_07346"; transcript_id "RvY_07346.1"; Scaffold003 rebuild exon 2627249 2627837 . - . gene_id "RvY_07346"; transcript_id "RvY_07346.1"; Scaffold003 rebuild transcript 2627241 2627837 . - . gene_id "RvY_07346"; transcript_id "RvY_07346.2"; gene_name "(1)MIP"; annotation "hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "(1)Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms."; Scaffold003 rebuild exon 2627241 2627837 . - . gene_id "RvY_07346"; transcript_id "RvY_07346.2"; Scaffold003 rebuild transcript 2628144 2631386 . + . gene_id "RvY_07347"; transcript_id "RvY_07347.1"; annotation "hypothetical protein."; Pfam "[DC_STAMP] DC-STAMP-like protein"; Scaffold003 rebuild exon 2628144 2628795 . + . gene_id "RvY_07347"; transcript_id "RvY_07347.1"; Scaffold003 rebuild exon 2628999 2629348 . + . gene_id "RvY_07347"; transcript_id "RvY_07347.1"; Scaffold003 rebuild exon 2629432 2629755 . + . gene_id "RvY_07347"; transcript_id "RvY_07347.1"; Scaffold003 rebuild exon 2629971 2630483 . + . gene_id "RvY_07347"; transcript_id "RvY_07347.1"; Scaffold003 rebuild exon 2630715 2631386 . + . gene_id "RvY_07347"; transcript_id "RvY_07347.1"; Scaffold003 rebuild transcript 2632405 2634997 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2632405 2632439 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild exon 2632542 2632646 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild exon 2632786 2633835 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild exon 2633927 2634115 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild exon 2634333 2634614 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild exon 2634688 2634777 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild exon 2634856 2634997 . + . gene_id "RvY_07348"; transcript_id "RvY_07348.1"; Scaffold003 rebuild transcript 2635471 2640542 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; gene_name "SrmB"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|(2)[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K13982"; similar_genes "DED1_ASHGO(e-value:2.6e-24;bit-score:110.0)"; Scaffold003 rebuild exon 2635471 2635506 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2635742 2635822 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2635889 2635990 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2636064 2636120 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2636193 2636279 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2636344 2636645 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2636836 2637291 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2637802 2638120 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2638473 2638804 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2638915 2639024 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2639196 2639288 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2639386 2639460 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2639532 2639613 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2639726 2639867 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2639936 2640050 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2640315 2640403 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild exon 2640471 2640542 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.1"; Scaffold003 rebuild transcript 2635471 2640542 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; gene_name "SrmB"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|(2)[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K13982"; similar_genes "DED1_ASHGO(e-value:2.6e-24;bit-score:110.0)"; Scaffold003 rebuild exon 2635471 2635506 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2635742 2635822 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2635889 2635990 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2636193 2636279 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2636344 2636645 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2636836 2637291 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2637802 2638120 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2638473 2638804 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2638915 2639024 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2639196 2639288 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2639386 2639460 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2639532 2639613 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2639726 2639867 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2639936 2640050 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2640315 2640403 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild exon 2640471 2640542 . - . gene_id "RvY_07349"; transcript_id "RvY_07349.2"; Scaffold003 rebuild transcript 2641171 2641549 . + . gene_id "RvY_07350"; transcript_id "RvY_07350.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2641171 2641337 . + . gene_id "RvY_07350"; transcript_id "RvY_07350.1"; Scaffold003 rebuild exon 2641435 2641549 . + . gene_id "RvY_07350"; transcript_id "RvY_07350.1"; Scaffold003 rebuild transcript 2641597 2642064 . - . gene_id "RvY_07351"; transcript_id "RvY_07351.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2641597 2641964 . - . gene_id "RvY_07351"; transcript_id "RvY_07351.1"; Scaffold003 rebuild exon 2642022 2642064 . - . gene_id "RvY_07351"; transcript_id "RvY_07351.1"; Scaffold003 rebuild transcript 2643346 2645302 . + . gene_id "RvY_07352"; transcript_id "RvY_07352.1"; gene_name "ZnMc_hatching_enzyme"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion."; Scaffold003 rebuild exon 2643346 2643541 . + . gene_id "RvY_07352"; transcript_id "RvY_07352.1"; Scaffold003 rebuild exon 2643618 2643759 . + . gene_id "RvY_07352"; transcript_id "RvY_07352.1"; Scaffold003 rebuild exon 2643835 2644049 . + . gene_id "RvY_07352"; transcript_id "RvY_07352.1"; Scaffold003 rebuild exon 2644150 2644383 . + . gene_id "RvY_07352"; transcript_id "RvY_07352.1"; Scaffold003 rebuild exon 2644554 2645302 . + . gene_id "RvY_07352"; transcript_id "RvY_07352.1"; Scaffold003 rebuild transcript 2645980 2646799 . - . gene_id "RvY_07353"; transcript_id "RvY_07353.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2645980 2646287 . - . gene_id "RvY_07353"; transcript_id "RvY_07353.1"; Scaffold003 rebuild exon 2646377 2646454 . - . gene_id "RvY_07353"; transcript_id "RvY_07353.1"; Scaffold003 rebuild exon 2646721 2646799 . - . gene_id "RvY_07353"; transcript_id "RvY_07353.1"; Scaffold003 rebuild transcript 2647420 2648844 . - . gene_id "RvY_07354"; transcript_id "RvY_07354.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2647420 2648255 . - . gene_id "RvY_07354"; transcript_id "RvY_07354.1"; Scaffold003 rebuild exon 2648463 2648844 . - . gene_id "RvY_07354"; transcript_id "RvY_07354.1"; Scaffold003 rebuild transcript 2650195 2651839 . + . gene_id "RvY_07355"; transcript_id "RvY_07355.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold003 rebuild exon 2650195 2650328 . + . gene_id "RvY_07355"; transcript_id "RvY_07355.1"; Scaffold003 rebuild exon 2650388 2650667 . + . gene_id "RvY_07355"; transcript_id "RvY_07355.1"; Scaffold003 rebuild exon 2650925 2651496 . + . gene_id "RvY_07355"; transcript_id "RvY_07355.1"; Scaffold003 rebuild exon 2651698 2651839 . + . gene_id "RvY_07355"; transcript_id "RvY_07355.1"; Scaffold003 rebuild transcript 2653787 2654998 . + . gene_id "RvY_07356"; transcript_id "RvY_07356.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "SSR3_MOUSE(e-value:4.7e-13;bit-score:72.0)"; Scaffold003 rebuild exon 2653787 2653984 . + . gene_id "RvY_07356"; transcript_id "RvY_07356.1"; Scaffold003 rebuild exon 2654831 2654998 . + . gene_id "RvY_07356"; transcript_id "RvY_07356.1"; Scaffold003 rebuild transcript 2655686 2656811 . + . gene_id "RvY_07357"; transcript_id "RvY_07357.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2655686 2655695 . + . gene_id "RvY_07357"; transcript_id "RvY_07357.1"; Scaffold003 rebuild exon 2655810 2656179 . + . gene_id "RvY_07357"; transcript_id "RvY_07357.1"; Scaffold003 rebuild exon 2656433 2656811 . + . gene_id "RvY_07357"; transcript_id "RvY_07357.1"; Scaffold003 rebuild transcript 2657210 2659450 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; gene_name "SMARCD"; annotation "putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2"; Pfam "[SWIB] SWIB/MDM2 domain"; CDD "SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]"; KO "K11650"; similar_genes "SMRD2_RAT(e-value:4.7e-32;bit-score:136.0)"; Scaffold003 rebuild exon 2657210 2657482 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2657545 2657680 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2657772 2657869 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2657973 2658134 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2658215 2658316 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2658379 2658519 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2658598 2658729 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2658810 2658932 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2658999 2659352 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild exon 2659424 2659450 . - . gene_id "RvY_07358"; transcript_id "RvY_07358.1"; Scaffold003 rebuild transcript 2660144 2662131 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; gene_name "CDK5"; annotation "Cell division protein kinase 5"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury."; EC "EC2.7.11.22"; KO "K02090"; similar_genes "CDK5_XENLA(e-value:7.8e-115;bit-score:411.0)"; Scaffold003 rebuild exon 2660144 2660189 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2660278 2660313 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2660380 2660433 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2660547 2660722 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2661335 2661439 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2661517 2661631 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2661706 2661736 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild exon 2661795 2662131 . + . gene_id "RvY_07359"; transcript_id "RvY_07359.1"; Scaffold003 rebuild transcript 2662496 2663157 . - . gene_id "RvY_07360"; transcript_id "RvY_07360.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold003 rebuild exon 2662496 2662956 . - . gene_id "RvY_07360"; transcript_id "RvY_07360.1"; Scaffold003 rebuild exon 2663055 2663157 . - . gene_id "RvY_07360"; transcript_id "RvY_07360.1"; Scaffold003 rebuild transcript 2662300 2662599 . - . gene_id "RvY_07360"; transcript_id "RvY_07360.2"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold003 rebuild exon 2662300 2662599 . - . gene_id "RvY_07360"; transcript_id "RvY_07360.2"; Scaffold003 rebuild transcript 2664142 2664474 . - . gene_id "RvY_07361"; transcript_id "RvY_07361.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; similar_genes "EXPI_RAT(e-value:2.6e-09;bit-score:60.0)"; Scaffold003 rebuild exon 2664142 2664474 . - . gene_id "RvY_07361"; transcript_id "RvY_07361.1"; Scaffold003 rebuild transcript 2665889 2666548 . + . gene_id "RvY_07362"; transcript_id "RvY_07362.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2665889 2666548 . + . gene_id "RvY_07362"; transcript_id "RvY_07362.1"; Scaffold003 rebuild transcript 2665913 2666433 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold003 rebuild exon 2665913 2666286 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.1"; Scaffold003 rebuild exon 2666364 2666433 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.1"; Scaffold003 rebuild transcript 2666578 2666937 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.2"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold003 rebuild exon 2666578 2666937 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.2"; Scaffold003 rebuild transcript 2666366 2666937 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.3"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold003 rebuild exon 2666366 2666403 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.3"; Scaffold003 rebuild exon 2666688 2666937 . - . gene_id "RvY_07363"; transcript_id "RvY_07363.3"; Scaffold003 rebuild transcript 2666937 2667257 . - . gene_id "RvY_07364"; transcript_id "RvY_07364.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2666937 2667257 . - . gene_id "RvY_07364"; transcript_id "RvY_07364.1"; Scaffold003 rebuild transcript 2668023 2669470 . + . gene_id "RvY_07365"; transcript_id "RvY_07365.1"; gene_name "euk_LANCL"; annotation "putative LanC-like protein 3"; Pfam "[LANC_like] Lanthionine synthetase C-like protein"; CDD "eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs."; similar_genes "LANC3_HUMAN(e-value:3.5e-28;bit-score:123.0)"; Scaffold003 rebuild exon 2668023 2668595 . + . gene_id "RvY_07365"; transcript_id "RvY_07365.1"; Scaffold003 rebuild exon 2668692 2668821 . + . gene_id "RvY_07365"; transcript_id "RvY_07365.1"; Scaffold003 rebuild exon 2668916 2669122 . + . gene_id "RvY_07365"; transcript_id "RvY_07365.1"; Scaffold003 rebuild exon 2669193 2669470 . + . gene_id "RvY_07365"; transcript_id "RvY_07365.1"; Scaffold003 rebuild transcript 2669850 2671675 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; gene_name "COPS2"; annotation "COP9 signalosome complex subunit 2"; Pfam "[PCI_Csn8] COP9 signalosome, subunit CSN8|[PCI]"; CDD "26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]"; KO "K12176"; similar_genes "CSN2_XENLA(e-value:1.2e-136;bit-score:483.0)"; Scaffold003 rebuild exon 2669850 2670009 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; Scaffold003 rebuild exon 2670088 2670232 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; Scaffold003 rebuild exon 2670314 2670411 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; Scaffold003 rebuild exon 2670475 2671001 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; Scaffold003 rebuild exon 2671171 2671425 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; Scaffold003 rebuild exon 2671526 2671675 . - . gene_id "RvY_07366"; transcript_id "RvY_07366.1"; Scaffold003 rebuild transcript 2672406 2673583 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; gene_name "ATG5"; annotation "putative Autophagy protein 5"; Pfam "[APG5] Autophagy protein Apg5"; KO "K08339"; similar_genes "ATG5_PONAB(e-value:1.2e-45;bit-score:181.0)"; Scaffold003 rebuild exon 2672406 2672516 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; Scaffold003 rebuild exon 2672593 2672720 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; Scaffold003 rebuild exon 2672810 2672888 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; Scaffold003 rebuild exon 2672956 2673118 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; Scaffold003 rebuild exon 2673189 2673395 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; Scaffold003 rebuild exon 2673477 2673583 . + . gene_id "RvY_07367"; transcript_id "RvY_07367.1"; Scaffold003 rebuild transcript 2674009 2674933 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; gene_name "(1)VPS25"; annotation "(1,3)putative Vacuolar protein-sorting-associated protein 25(2,4)hypothetical protein."; Pfam "[ESCRT-II] ESCRT-II complex subunit"; KO "(1)K12189"; similar_genes "(1,3)VPS25_DANRE(e-value:2.7e-30;bit-score:130.0)(2)VPS25_XENLA(e-value:7.6e-24;bit-score:108.0)"; Scaffold003 rebuild exon 2674009 2674121 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; Scaffold003 rebuild exon 2674201 2674276 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; Scaffold003 rebuild exon 2674366 2674454 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; Scaffold003 rebuild exon 2674524 2674577 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; Scaffold003 rebuild exon 2674668 2674813 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; Scaffold003 rebuild exon 2674875 2674933 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.1"; Scaffold003 rebuild transcript 2674009 2674718 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.2"; gene_name "(1)VPS25"; annotation "(1,3)putative Vacuolar protein-sorting-associated protein 25(2,4)hypothetical protein."; Pfam "[ESCRT-II] ESCRT-II complex subunit"; KO "(1)K12189"; similar_genes "(1,3)VPS25_DANRE(e-value:2.7e-30;bit-score:130.0)(2)VPS25_XENLA(e-value:7.6e-24;bit-score:108.0)"; Scaffold003 rebuild exon 2674009 2674121 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.2"; Scaffold003 rebuild exon 2674201 2674276 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.2"; Scaffold003 rebuild exon 2674366 2674454 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.2"; Scaffold003 rebuild exon 2674524 2674577 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.2"; Scaffold003 rebuild exon 2674664 2674718 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.2"; Scaffold003 rebuild transcript 2674360 2674933 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.3"; gene_name "(1)VPS25"; annotation "(1,3)putative Vacuolar protein-sorting-associated protein 25(2,4)hypothetical protein."; Pfam "[ESCRT-II] ESCRT-II complex subunit"; KO "(1)K12189"; similar_genes "(1,3)VPS25_DANRE(e-value:2.7e-30;bit-score:130.0)(2)VPS25_XENLA(e-value:7.6e-24;bit-score:108.0)"; Scaffold003 rebuild exon 2674360 2674454 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.3"; Scaffold003 rebuild exon 2674524 2674577 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.3"; Scaffold003 rebuild exon 2674668 2674813 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.3"; Scaffold003 rebuild exon 2674875 2674933 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.3"; Scaffold003 rebuild transcript 2674722 2675091 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.4"; gene_name "(1)VPS25"; annotation "(1,3)putative Vacuolar protein-sorting-associated protein 25(2,4)hypothetical protein."; Pfam "[ESCRT-II] ESCRT-II complex subunit"; KO "(1)K12189"; similar_genes "(1,3)VPS25_DANRE(e-value:2.7e-30;bit-score:130.0)(2)VPS25_XENLA(e-value:7.6e-24;bit-score:108.0)"; Scaffold003 rebuild exon 2674722 2674813 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.4"; Scaffold003 rebuild exon 2674875 2675091 . - . gene_id "RvY_07368"; transcript_id "RvY_07368.4"; Scaffold003 rebuild transcript 2676024 2681847 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; gene_name "BLM"; annotation "putative Bloom syndrome protein homolog"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[HRDC]|[DEAD] DEAD/DEAH box helicase|[RQC]"; CDD "ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "K10901"; similar_genes "BLM_CHICK(e-value:1.9e-37;bit-score:153.0)"; Scaffold003 rebuild exon 2676024 2676654 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2676821 2677313 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2677385 2677599 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2677806 2678125 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2678404 2678851 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2679109 2679872 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2680100 2680371 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild exon 2681211 2681847 . + . gene_id "RvY_07369"; transcript_id "RvY_07369.1"; Scaffold003 rebuild transcript 2682288 2683049 . - . gene_id "RvY_07370"; transcript_id "RvY_07370.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2682288 2682473 . - . gene_id "RvY_07370"; transcript_id "RvY_07370.1"; Scaffold003 rebuild exon 2682969 2683049 . - . gene_id "RvY_07370"; transcript_id "RvY_07370.1"; Scaffold003 rebuild transcript 2682495 2683217 . + . gene_id "RvY_07371"; transcript_id "RvY_07371.1"; annotation "hypothetical protein."; Pfam "[Sybindin] Sybindin-like family"; Scaffold003 rebuild exon 2682495 2682590 . + . gene_id "RvY_07371"; transcript_id "RvY_07371.1"; Scaffold003 rebuild exon 2682676 2682746 . + . gene_id "RvY_07371"; transcript_id "RvY_07371.1"; Scaffold003 rebuild exon 2682859 2682994 . + . gene_id "RvY_07371"; transcript_id "RvY_07371.1"; Scaffold003 rebuild exon 2683092 2683217 . + . gene_id "RvY_07371"; transcript_id "RvY_07371.1"; Scaffold003 rebuild transcript 2683605 2688008 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; gene_name "(1,3)PRK12323(2)PRK05648"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain"; CDD "(1,3)DNA polymerase III subunits gamma and tau; Provisional(2)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold003 rebuild exon 2683605 2683994 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2684066 2684187 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2684961 2685311 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2685921 2686175 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2686256 2686720 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2686779 2687021 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2687133 2687497 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2687571 2687630 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild exon 2687722 2688008 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.1"; Scaffold003 rebuild transcript 2683605 2688008 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; gene_name "(1,3)PRK12323(2)PRK05648"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain"; CDD "(1,3)DNA polymerase III subunits gamma and tau; Provisional(2)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold003 rebuild exon 2683605 2683994 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2684066 2684187 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2684961 2685311 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2685921 2686091 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2686256 2686720 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2686779 2687021 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2687133 2687497 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2687571 2687630 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild exon 2687722 2688008 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.2"; Scaffold003 rebuild transcript 2685720 2688008 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; gene_name "(1,3)PRK12323(2)PRK05648"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain"; CDD "(1,3)DNA polymerase III subunits gamma and tau; Provisional(2)DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold003 rebuild exon 2685720 2685856 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild exon 2685921 2686175 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild exon 2686256 2686720 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild exon 2686779 2687021 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild exon 2687133 2687497 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild exon 2687571 2687630 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild exon 2687722 2688008 . - . gene_id "RvY_07372"; transcript_id "RvY_07372.3"; Scaffold003 rebuild transcript 2689826 2690569 . + . gene_id "RvY_07373"; transcript_id "RvY_07373.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 2689826 2690569 . + . gene_id "RvY_07373"; transcript_id "RvY_07373.1"; Scaffold003 framed transcript 2691650 2691901 . + . gene_id "RvY_07374"; transcript_id "RvY_07374.1"; annotation "hypothetical protein."; Scaffold003 framed exon 2691650 2691901 . + . gene_id "RvY_07374"; transcript_id "RvY_07374.1"; Scaffold003 rebuild transcript 2692183 2693005 . + . gene_id "RvY_07375"; transcript_id "RvY_07375.1"; gene_name "fdx_isc"; annotation "Adrenodoxin-like protein, mitochondrial"; Pfam "[Fer2] 2Fe-2S iron-sulfur cluster binding domain"; CDD "ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes."; similar_genes "ADXH_DROME(e-value:4.3e-56;bit-score:215.0)"; Scaffold003 rebuild exon 2692183 2692391 . + . gene_id "RvY_07375"; transcript_id "RvY_07375.1"; Scaffold003 rebuild exon 2692483 2693005 . + . gene_id "RvY_07375"; transcript_id "RvY_07375.1"; Scaffold003 rebuild transcript 2693118 2694058 . - . gene_id "RvY_07376"; transcript_id "RvY_07376.1"; annotation "Protein MAK16 homolog"; Pfam "[Mak16] Mak16 protein C-terminal region|[Ribosomal_L28e] Ribosomal L28e protein family"; KO "K14831"; similar_genes "MAK16_DANRE(e-value:8.6e-74;bit-score:274.0)"; Scaffold003 rebuild exon 2693118 2693738 . - . gene_id "RvY_07376"; transcript_id "RvY_07376.1"; Scaffold003 rebuild exon 2693813 2694058 . - . gene_id "RvY_07376"; transcript_id "RvY_07376.1"; Scaffold003 rebuild transcript 2694521 2695420 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.1"; gene_name "(1)PSMB6(2)proteasome_beta_type_6"; annotation "(1)20S proteasome subunit beta 1 [EC:3.4.25.1](2)putative Proteasome subunit beta type-6"; Pfam "[Proteasome] Proteasome subunit"; CDD "proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "(1)K02738"; similar_genes "(1)PSB6_YEAST(e-value:2.1e-17;bit-score:87.0)(2)PSB6_RAT(e-value:1.2e-30;bit-score:131.0)"; Scaffold003 rebuild exon 2694521 2694592 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.1"; Scaffold003 rebuild exon 2694689 2694768 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.1"; Scaffold003 rebuild exon 2694888 2695019 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.1"; Scaffold003 rebuild exon 2695114 2695420 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.1"; Scaffold003 rebuild transcript 2695196 2695645 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.2"; gene_name "(1)PSMB6(2)proteasome_beta_type_6"; annotation "(1)20S proteasome subunit beta 1 [EC:3.4.25.1](2)putative Proteasome subunit beta type-6"; Pfam "[Proteasome] Proteasome subunit"; CDD "proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "(1)K02738"; similar_genes "(1)PSB6_YEAST(e-value:2.1e-17;bit-score:87.0)(2)PSB6_RAT(e-value:1.2e-30;bit-score:131.0)"; Scaffold003 rebuild exon 2695196 2695243 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.2"; Scaffold003 rebuild exon 2695305 2695449 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.2"; Scaffold003 rebuild exon 2695518 2695645 . + . gene_id "RvY_07377"; transcript_id "RvY_07377.2"; Scaffold003 rebuild transcript 2695862 2696854 . - . gene_id "RvY_07378"; transcript_id "RvY_07378.1"; gene_name "K05606"; annotation "putative Methylmalonyl-CoA epimerase, mitochondrial"; Pfam "[Glyoxalase] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|[Glyoxalase_4] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|[Glyoxalase_3] Glyoxalase-like domain|[Glyoxalase_2] Glyoxalase-like domain"; CDD "methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer."; EC "EC5.1.99.1"; KO "K05606"; similar_genes "MCEE_BOVIN(e-value:2.1e-34;bit-score:143.0)"; Scaffold003 rebuild exon 2695862 2696110 . - . gene_id "RvY_07378"; transcript_id "RvY_07378.1"; Scaffold003 rebuild exon 2696226 2696285 . - . gene_id "RvY_07378"; transcript_id "RvY_07378.1"; Scaffold003 rebuild exon 2696453 2696563 . - . gene_id "RvY_07378"; transcript_id "RvY_07378.1"; Scaffold003 rebuild exon 2696681 2696854 . - . gene_id "RvY_07378"; transcript_id "RvY_07378.1"; Scaffold003 rebuild transcript 2697428 2698512 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.1"; gene_name "GINS1"; annotation "GINS complex subunit 1"; Pfam "[Sld5] GINS complex protein"; KO "K10732"; Scaffold003 rebuild exon 2697428 2697571 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.1"; Scaffold003 rebuild exon 2697684 2697993 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.1"; Scaffold003 rebuild exon 2698120 2698184 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.1"; Scaffold003 rebuild exon 2698285 2698410 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.1"; Scaffold003 rebuild exon 2698471 2698512 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.1"; Scaffold003 rebuild transcript 2697463 2698512 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.2"; gene_name "GINS1"; annotation "GINS complex subunit 1"; Pfam "[Sld5] GINS complex protein"; KO "K10732"; Scaffold003 rebuild exon 2697463 2697555 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.2"; Scaffold003 rebuild exon 2697684 2697993 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.2"; Scaffold003 rebuild exon 2698120 2698184 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.2"; Scaffold003 rebuild exon 2698285 2698410 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.2"; Scaffold003 rebuild exon 2698471 2698512 . - . gene_id "RvY_07379"; transcript_id "RvY_07379.2"; Scaffold003 rebuild transcript 2699231 2699752 . - . gene_id "RvY_07380"; transcript_id "RvY_07380.1"; gene_name "ATP-synt_E"; annotation "hypothetical protein."; Pfam "[ATP-synt_E] ATP synthase E chain"; CDD "ATP synthase E chain. This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit."; Scaffold003 rebuild exon 2699231 2699612 . - . gene_id "RvY_07380"; transcript_id "RvY_07380.1"; Scaffold003 rebuild exon 2699736 2699752 . - . gene_id "RvY_07380"; transcript_id "RvY_07380.1"; Scaffold003 rebuild transcript 2700296 2700916 . + . gene_id "RvY_07381"; transcript_id "RvY_07381.1"; gene_name "NDUFB5"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 5 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUF_B5] NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03961"; similar_genes "NDUB5_HUMAN(e-value:5.1e-08;bit-score:56.0)"; Scaffold003 rebuild exon 2700296 2700916 . + . gene_id "RvY_07381"; transcript_id "RvY_07381.1"; Scaffold003 rebuild transcript 2701237 2702694 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; gene_name "SRPRB"; annotation "signal recognition particle receptor subunit beta"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer."; KO "K12272"; Scaffold003 rebuild exon 2701237 2701441 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2701557 2701611 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2701696 2701772 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2701886 2701957 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2702048 2702130 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2702194 2702277 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2702353 2702444 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild exon 2702571 2702694 . - . gene_id "RvY_07382"; transcript_id "RvY_07382.1"; Scaffold003 rebuild transcript 2703278 2705645 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; gene_name "TFIIF1"; annotation "transcription initiation factor TFIIF alpha subunit"; Pfam "[TFIIF_alpha] Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)"; KO "K03138"; Scaffold003 rebuild exon 2703278 2703330 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2703403 2703475 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2703596 2703807 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2703910 2704080 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2704146 2704278 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2704384 2704652 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2704721 2704866 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2704939 2705015 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2705091 2705172 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2705288 2705396 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild exon 2705462 2705645 . + . gene_id "RvY_07383"; transcript_id "RvY_07383.1"; Scaffold003 rebuild transcript 2705954 2708092 . - . gene_id "RvY_07384"; transcript_id "RvY_07384.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2705954 2706354 . - . gene_id "RvY_07384"; transcript_id "RvY_07384.1"; Scaffold003 rebuild exon 2706554 2707051 . - . gene_id "RvY_07384"; transcript_id "RvY_07384.1"; Scaffold003 rebuild exon 2707245 2707631 . - . gene_id "RvY_07384"; transcript_id "RvY_07384.1"; Scaffold003 rebuild exon 2707744 2708092 . - . gene_id "RvY_07384"; transcript_id "RvY_07384.1"; Scaffold003 rebuild transcript 2708638 2711282 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; gene_name "CCR4"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]"; EC "EC3.1.4.-"; similar_genes "PDE12_MOUSE(e-value:3.6e-13;bit-score:73.0)"; Scaffold003 rebuild exon 2708638 2708909 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; Scaffold003 rebuild exon 2708991 2709168 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; Scaffold003 rebuild exon 2709293 2709394 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; Scaffold003 rebuild exon 2709462 2709897 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; Scaffold003 rebuild exon 2710059 2710357 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; Scaffold003 rebuild exon 2710563 2711282 . - . gene_id "RvY_07385"; transcript_id "RvY_07385.1"; Scaffold003 rebuild transcript 2711993 2712632 . - . gene_id "RvY_07386"; transcript_id "RvY_07386.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2711993 2712486 . - . gene_id "RvY_07386"; transcript_id "RvY_07386.1"; Scaffold003 rebuild exon 2712554 2712632 . - . gene_id "RvY_07386"; transcript_id "RvY_07386.1"; Scaffold003 rebuild transcript 2712827 2713204 . - . gene_id "RvY_07387"; transcript_id "RvY_07387.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2712827 2713204 . - . gene_id "RvY_07387"; transcript_id "RvY_07387.1"; Scaffold003 rebuild transcript 2713315 2715663 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; annotation "hypothetical protein."; Pfam "[PLDc_3] PLD-like domain|[PLDc_2] PLD-like domain"; EC "EC3.1.4.4"; similar_genes "PLD3_XENLA(e-value:1.9e-18;bit-score:90.0)"; Scaffold003 rebuild exon 2713315 2713494 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2713580 2713820 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2713995 2714097 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2714166 2714479 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2714761 2714880 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2715001 2715122 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2715245 2715344 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild exon 2715434 2715663 . - . gene_id "RvY_07388"; transcript_id "RvY_07388.1"; Scaffold003 rebuild transcript 2719934 2720830 . - . gene_id "RvY_07389"; transcript_id "RvY_07389.1"; gene_name "gmk"; annotation "hypothetical protein."; Pfam "[Guanylate_kin] Guanylate kinase"; CDD "guanylate kinase; Provisional"; Scaffold003 rebuild exon 2719934 2720145 . - . gene_id "RvY_07389"; transcript_id "RvY_07389.1"; Scaffold003 rebuild exon 2720209 2720830 . - . gene_id "RvY_07389"; transcript_id "RvY_07389.1"; Scaffold003 rebuild transcript 2721462 2722732 . - . gene_id "RvY_07390"; transcript_id "RvY_07390.1"; gene_name "GT8_LARGE_C"; annotation "hypothetical protein."; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis."; Scaffold003 rebuild exon 2721462 2721898 . - . gene_id "RvY_07390"; transcript_id "RvY_07390.1"; Scaffold003 rebuild exon 2721980 2722223 . - . gene_id "RvY_07390"; transcript_id "RvY_07390.1"; Scaffold003 rebuild exon 2722295 2722732 . - . gene_id "RvY_07390"; transcript_id "RvY_07390.1"; Scaffold003 rebuild transcript 2723489 2723973 . - . gene_id "RvY_07391"; transcript_id "RvY_07391.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2723489 2723508 . - . gene_id "RvY_07391"; transcript_id "RvY_07391.1"; Scaffold003 rebuild exon 2723793 2723973 . - . gene_id "RvY_07391"; transcript_id "RvY_07391.1"; Scaffold003 rebuild transcript 2724392 2724754 . - . gene_id "RvY_07392"; transcript_id "RvY_07392.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2724392 2724754 . - . gene_id "RvY_07392"; transcript_id "RvY_07392.1"; Scaffold003 rebuild transcript 2726270 2727105 . + . gene_id "RvY_07393"; transcript_id "RvY_07393.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 2726270 2726286 . + . gene_id "RvY_07393"; transcript_id "RvY_07393.1"; Scaffold003 rebuild exon 2726748 2727105 . + . gene_id "RvY_07393"; transcript_id "RvY_07393.1"; Scaffold003 rebuild transcript 2727907 2729038 . + . gene_id "RvY_07394"; transcript_id "RvY_07394.1"; gene_name "RP-S2"; annotation "small subunit ribosomal protein S2"; Pfam "[Ribosomal_S2] Ribosomal protein S2"; CDD "Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones."; KO "K02967"; similar_genes "RT02_BOVIN(e-value:3.8e-23;bit-score:106.0)"; Scaffold003 rebuild exon 2727907 2728114 . + . gene_id "RvY_07394"; transcript_id "RvY_07394.1"; Scaffold003 rebuild exon 2728258 2728573 . + . gene_id "RvY_07394"; transcript_id "RvY_07394.1"; Scaffold003 rebuild exon 2728717 2729038 . + . gene_id "RvY_07394"; transcript_id "RvY_07394.1"; Scaffold003 rebuild transcript 2729746 2731322 . + . gene_id "RvY_07395"; transcript_id "RvY_07395.1"; gene_name "MGAT2"; annotation "alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143]"; Pfam "[MGAT2] N-acetylglucosaminyltransferase II (MGAT2)"; CDD "N-acetylglucosaminyltransferase II (MGAT2). UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II (EC 2.4.1.143) (GnT II/MGAT2) is a Golgi resident enzyme that catalyses an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides. Mutations in the MGAT2 gene lead to congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors."; EC "EC2.4.1.143"; KO "K00736"; Scaffold003 rebuild exon 2729746 2730247 . + . gene_id "RvY_07395"; transcript_id "RvY_07395.1"; Scaffold003 rebuild exon 2730407 2730549 . + . gene_id "RvY_07395"; transcript_id "RvY_07395.1"; Scaffold003 rebuild exon 2730626 2731142 . + . gene_id "RvY_07395"; transcript_id "RvY_07395.1"; Scaffold003 rebuild exon 2731219 2731322 . + . gene_id "RvY_07395"; transcript_id "RvY_07395.1"; Scaffold003 rebuild transcript 2731648 2732634 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2731648 2732386 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.1"; Scaffold003 rebuild exon 2732474 2732634 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.1"; Scaffold003 rebuild transcript 2731792 2732831 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2731792 2732386 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.2"; Scaffold003 rebuild exon 2732474 2732626 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.2"; Scaffold003 rebuild exon 2732782 2732831 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.2"; Scaffold003 rebuild transcript 2731648 2732406 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2731648 2732406 . + . gene_id "RvY_07396"; transcript_id "RvY_07396.3"; Scaffold003 rebuild transcript 2737025 2738837 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; gene_name "CYCc"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2)putative Atrial natriuretic peptide receptor 2"; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRA_RAT(e-value:2.3e-44;bit-score:176.0)(2)ANPRB_RAT(e-value:8.5e-38;bit-score:155.0)"; Scaffold003 rebuild exon 2737025 2737100 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2737297 2737468 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2737569 2737721 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2737789 2737981 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2738087 2738113 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2738200 2738362 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2738450 2738483 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2738545 2738594 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild exon 2738662 2738837 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.1"; Scaffold003 rebuild transcript 2737025 2738487 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; gene_name "CYCc"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2)putative Atrial natriuretic peptide receptor 2"; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)ANPRA_RAT(e-value:2.3e-44;bit-score:176.0)(2)ANPRB_RAT(e-value:8.5e-38;bit-score:155.0)"; Scaffold003 rebuild exon 2737025 2737100 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild exon 2737297 2737468 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild exon 2737569 2737721 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild exon 2737789 2737981 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild exon 2738087 2738113 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild exon 2738200 2738362 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild exon 2738450 2738487 . + . gene_id "RvY_07397"; transcript_id "RvY_07397.2"; Scaffold003 rebuild transcript 2738809 2739168 . - . gene_id "RvY_07398"; transcript_id "RvY_07398.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2738809 2739168 . - . gene_id "RvY_07398"; transcript_id "RvY_07398.1"; Scaffold003 rebuild transcript 2738762 2738992 . - . gene_id "RvY_07398"; transcript_id "RvY_07398.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2738762 2738992 . - . gene_id "RvY_07398"; transcript_id "RvY_07398.2"; Scaffold003 rebuild transcript 2740350 2741774 . + . gene_id "RvY_07399"; transcript_id "RvY_07399.1"; gene_name "PTGES"; annotation "prostaglandin-E synthase [EC:5.3.99.3]"; Pfam "[Glutaredoxin]|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST Scaffold003 rebuild exon 2740350 2740511 . + . gene_id "RvY_07399"; transcript_id "RvY_07399.1"; Scaffold003 rebuild exon 2740661 2740780 . + . gene_id "RvY_07399"; transcript_id "RvY_07399.1"; Scaffold003 rebuild exon 2740839 2740943 . + . gene_id "RvY_07399"; transcript_id "RvY_07399.1"; Scaffold003 rebuild exon 2741005 2741210 . + . gene_id "RvY_07399"; transcript_id "RvY_07399.1"; Scaffold003 rebuild exon 2741279 2741774 . + . gene_id "RvY_07399"; transcript_id "RvY_07399.1"; Scaffold003 rebuild transcript 2742140 2744856 . - . gene_id "RvY_07400"; transcript_id "RvY_07400.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 2742140 2743059 . - . gene_id "RvY_07400"; transcript_id "RvY_07400.1"; Scaffold003 rebuild exon 2743120 2743948 . - . gene_id "RvY_07400"; transcript_id "RvY_07400.1"; Scaffold003 rebuild exon 2744010 2744732 . - . gene_id "RvY_07400"; transcript_id "RvY_07400.1"; Scaffold003 rebuild exon 2744842 2744856 . - . gene_id "RvY_07400"; transcript_id "RvY_07400.1"; Scaffold003 rebuild transcript 2745685 2747806 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; annotation "hypothetical protein."; Pfam "[SET]|[MBD] Methyl-CpG binding domain|[Pre-SET] Pre-SET motif"; EC "EC2.1.1.43"; similar_genes "EHMT1_HUMAN(e-value:3.4e-07;bit-score:53.0)"; Scaffold003 rebuild exon 2745685 2745777 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild exon 2745839 2745962 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild exon 2746026 2746241 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild exon 2746316 2746435 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild exon 2746647 2746930 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild exon 2747049 2747100 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild exon 2747196 2747806 . - . gene_id "RvY_07401"; transcript_id "RvY_07401.1"; Scaffold003 rebuild transcript 2748827 2752985 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; annotation "hypothetical protein."; similar_genes "FNIP2_HUMAN(e-value:1.5e-09;bit-score:61.0)"; Scaffold003 rebuild exon 2748827 2748936 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2749182 2749425 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2749590 2749851 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2749957 2750581 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2750664 2750831 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2750908 2751231 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2751425 2752043 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2752276 2752512 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2752587 2752702 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild exon 2752901 2752985 . + . gene_id "RvY_07402"; transcript_id "RvY_07402.1"; Scaffold003 rebuild transcript 2753212 2753619 . + . gene_id "RvY_07403"; transcript_id "RvY_07403.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2753212 2753619 . + . gene_id "RvY_07403"; transcript_id "RvY_07403.1"; Scaffold003 rebuild transcript 2753645 2754635 . - . gene_id "RvY_07404"; transcript_id "RvY_07404.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2753645 2753894 . - . gene_id "RvY_07404"; transcript_id "RvY_07404.1"; Scaffold003 rebuild exon 2753973 2754066 . - . gene_id "RvY_07404"; transcript_id "RvY_07404.1"; Scaffold003 rebuild exon 2754172 2754318 . - . gene_id "RvY_07404"; transcript_id "RvY_07404.1"; Scaffold003 rebuild exon 2754381 2754478 . - . gene_id "RvY_07404"; transcript_id "RvY_07404.1"; Scaffold003 rebuild exon 2754574 2754635 . - . gene_id "RvY_07404"; transcript_id "RvY_07404.1"; Scaffold003 rebuild transcript 2754647 2754907 . + . gene_id "RvY_07405"; transcript_id "RvY_07405.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2754647 2754907 . + . gene_id "RvY_07405"; transcript_id "RvY_07405.1"; Scaffold003 rebuild transcript 2755508 2756520 . + . gene_id "RvY_07406"; transcript_id "RvY_07406.1"; gene_name "NDUFB4"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUF_B4] NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03960"; Scaffold003 rebuild exon 2755508 2755690 . + . gene_id "RvY_07406"; transcript_id "RvY_07406.1"; Scaffold003 rebuild exon 2755760 2755903 . + . gene_id "RvY_07406"; transcript_id "RvY_07406.1"; Scaffold003 rebuild exon 2756455 2756520 . + . gene_id "RvY_07406"; transcript_id "RvY_07406.1"; Scaffold003 rebuild transcript 2756893 2757422 . - . gene_id "RvY_07407"; transcript_id "RvY_07407.1"; annotation "hypothetical protein."; Pfam "[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; similar_genes "(1)CYB5_NEUCR(e-value:8.8e-08;bit-score:55.0)"; Scaffold003 rebuild exon 2756893 2756946 . - . gene_id "RvY_07407"; transcript_id "RvY_07407.1"; Scaffold003 rebuild exon 2757038 2757166 . - . gene_id "RvY_07407"; transcript_id "RvY_07407.1"; Scaffold003 rebuild exon 2757252 2757422 . - . gene_id "RvY_07407"; transcript_id "RvY_07407.1"; Scaffold003 rebuild transcript 2756655 2756945 . - . gene_id "RvY_07407"; transcript_id "RvY_07407.2"; annotation "hypothetical protein."; Pfam "[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; similar_genes "(1)CYB5_NEUCR(e-value:8.8e-08;bit-score:55.0)"; Scaffold003 rebuild exon 2756655 2756945 . - . gene_id "RvY_07407"; transcript_id "RvY_07407.2"; Scaffold003 rebuild transcript 2757325 2757567 . + . gene_id "RvY_07408"; transcript_id "RvY_07408.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2757325 2757567 . + . gene_id "RvY_07408"; transcript_id "RvY_07408.1"; Scaffold003 rebuild transcript 2758344 2758661 . - . gene_id "RvY_07409"; transcript_id "RvY_07409.1"; gene_name "PTZ00023"; annotation "putative Glyceraldehyde-3-phosphate dehydrogenase"; Pfam "[Gp_dh_C] Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain"; CDD "glyceraldehyde-3-phosphate dehydrogenase; Provisional"; EC "EC1.2.1.12"; similar_genes "G3P_ECHMU(e-value:2.0e-26;bit-score:117.0)"; Scaffold003 rebuild exon 2758344 2758661 . - . gene_id "RvY_07409"; transcript_id "RvY_07409.1"; Scaffold003 rebuild transcript 2758833 2759659 . - . gene_id "RvY_07410"; transcript_id "RvY_07410.1"; gene_name "GAPDH-I"; annotation "Glyceraldehyde-3-phosphate dehydrogenase"; Pfam "[Gp_dh_N] Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain|[Gp_dh_C] Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain"; CDD "glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model."; EC "EC1.2.1.12"; similar_genes "G3P_PANVR(e-value:4.5e-60;bit-score:229.0)"; Scaffold003 rebuild exon 2758833 2758931 . - . gene_id "RvY_07410"; transcript_id "RvY_07410.1"; Scaffold003 rebuild exon 2759006 2759144 . - . gene_id "RvY_07410"; transcript_id "RvY_07410.1"; Scaffold003 rebuild exon 2759213 2759331 . - . gene_id "RvY_07410"; transcript_id "RvY_07410.1"; Scaffold003 rebuild exon 2759570 2759659 . - . gene_id "RvY_07410"; transcript_id "RvY_07410.1"; Scaffold003 rebuild transcript 2759734 2760139 . - . gene_id "RvY_07411"; transcript_id "RvY_07411.1"; gene_name "GAPDH"; annotation "putative Glyceraldehyde-3-phosphate dehydrogenase"; Pfam "[Gp_dh_N] Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain"; CDD "Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold."; EC "EC1.2.1.12"; KO "K00134"; similar_genes "G3P_GLOMM(e-value:5.2e-27;bit-score:119.0)"; Scaffold003 rebuild exon 2759734 2759844 . - . gene_id "RvY_07411"; transcript_id "RvY_07411.1"; Scaffold003 rebuild exon 2759927 2760023 . - . gene_id "RvY_07411"; transcript_id "RvY_07411.1"; Scaffold003 rebuild exon 2760117 2760139 . - . gene_id "RvY_07411"; transcript_id "RvY_07411.1"; Scaffold003 rebuild transcript 2761056 2766619 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; gene_name "(1)CYCc(2)PBP1_NPR_GC_like"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2)hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|(1)[Pkinase] Protein kinase domain|(1)[Pkinase_Tyr] Protein tyrosine kinase|(1)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(1)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.0e-44;bit-score:176.0)"; Scaffold003 rebuild exon 2761056 2761416 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2761491 2761549 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2761839 2762166 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2762240 2762283 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2762453 2762491 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2762860 2763075 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2763142 2763375 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2763524 2763756 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2763835 2763940 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2764022 2764174 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2764297 2764479 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2764570 2764636 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2764703 2764872 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2765019 2765132 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2765185 2765486 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2765550 2765769 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2765845 2765940 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2766028 2766079 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2766156 2766204 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2766273 2766322 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2766419 2766510 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild exon 2766575 2766619 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.1"; Scaffold003 rebuild transcript 2761056 2764300 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; gene_name "(1)CYCc(2)PBP1_NPR_GC_like"; annotation "(1)putative Atrial natriuretic peptide receptor 1(2)hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|(1)[Pkinase] Protein kinase domain|(1)[Pkinase_Tyr] Protein tyrosine kinase|(1)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(1)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.0e-44;bit-score:176.0)"; Scaffold003 rebuild exon 2761056 2761416 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2761491 2761549 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2761839 2762166 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2762240 2762283 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2762453 2762491 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2762860 2763075 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2763142 2763375 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2763524 2763756 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2763835 2763940 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild exon 2764022 2764300 . + . gene_id "RvY_07412"; transcript_id "RvY_07412.2"; Scaffold003 rebuild transcript 2768082 2769373 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 2768082 2768409 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.1"; Scaffold003 rebuild exon 2768729 2769118 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.1"; Scaffold003 rebuild exon 2769315 2769373 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.1"; Scaffold003 rebuild transcript 2768387 2769812 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 2768387 2768409 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.2"; Scaffold003 rebuild exon 2768729 2769118 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.2"; Scaffold003 rebuild exon 2769315 2769358 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.2"; Scaffold003 rebuild exon 2769652 2769690 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.2"; Scaffold003 rebuild exon 2769796 2769812 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.2"; Scaffold003 rebuild transcript 2768387 2769366 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.3"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 2768387 2768409 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.3"; Scaffold003 rebuild exon 2768729 2769118 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.3"; Scaffold003 rebuild exon 2769315 2769366 . + . gene_id "RvY_07413"; transcript_id "RvY_07413.3"; Scaffold003 rebuild transcript 2768709 2768945 . - . gene_id "RvY_07414"; transcript_id "RvY_07414.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2768709 2768945 . - . gene_id "RvY_07414"; transcript_id "RvY_07414.1"; Scaffold003 rebuild transcript 2770213 2773485 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; gene_name "CYCc"; annotation "putative Atrial natriuretic peptide receptor 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:1.3e-40;bit-score:164.0)"; Scaffold003 rebuild exon 2770213 2770377 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2770453 2770691 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2770760 2770871 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2770946 2771000 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2771073 2771173 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2771248 2771430 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2771496 2771732 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2771827 2771940 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2772005 2772306 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2772371 2772480 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2772563 2772707 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2772782 2772894 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2773074 2773107 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2773198 2773339 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild exon 2773432 2773485 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.1"; Scaffold003 rebuild transcript 2771108 2773021 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; gene_name "CYCc"; annotation "putative Atrial natriuretic peptide receptor 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:1.3e-40;bit-score:164.0)"; Scaffold003 rebuild exon 2771108 2771173 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2771248 2771430 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2771496 2771732 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2771827 2771940 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2772005 2772306 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2772371 2772480 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2772563 2772707 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2772782 2772894 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild exon 2772984 2773021 . + . gene_id "RvY_07415"; transcript_id "RvY_07415.2"; Scaffold003 rebuild transcript 2773967 2774221 . + . gene_id "RvY_07416"; transcript_id "RvY_07416.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2773967 2774221 . + . gene_id "RvY_07416"; transcript_id "RvY_07416.1"; Scaffold003 rebuild transcript 2775624 2776038 . + . gene_id "RvY_07417"; transcript_id "RvY_07417.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2775624 2775921 . + . gene_id "RvY_07417"; transcript_id "RvY_07417.1"; Scaffold003 rebuild exon 2776007 2776038 . + . gene_id "RvY_07417"; transcript_id "RvY_07417.1"; Scaffold003 rebuild transcript 2776372 2776746 . + . gene_id "RvY_07418"; transcript_id "RvY_07418.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2776372 2776672 . + . gene_id "RvY_07418"; transcript_id "RvY_07418.1"; Scaffold003 rebuild exon 2776739 2776746 . + . gene_id "RvY_07418"; transcript_id "RvY_07418.1"; Scaffold003 rebuild transcript 2777081 2778934 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.1"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold003 rebuild exon 2777081 2777152 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.1"; Scaffold003 rebuild exon 2777931 2778068 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.1"; Scaffold003 rebuild exon 2778242 2778475 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.1"; Scaffold003 rebuild exon 2778574 2778756 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.1"; Scaffold003 rebuild exon 2778845 2778934 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.1"; Scaffold003 rebuild transcript 2777081 2778777 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.2"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold003 rebuild exon 2777081 2777152 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.2"; Scaffold003 rebuild exon 2777931 2778068 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.2"; Scaffold003 rebuild exon 2778242 2778475 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.2"; Scaffold003 rebuild exon 2778574 2778777 . + . gene_id "RvY_07419"; transcript_id "RvY_07419.2"; Scaffold003 rebuild transcript 2779058 2779564 . + . gene_id "RvY_07420"; transcript_id "RvY_07420.1"; gene_name "CYCc"; annotation "hypothetical protein."; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRA_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 2779058 2779329 . + . gene_id "RvY_07420"; transcript_id "RvY_07420.1"; Scaffold003 rebuild exon 2779405 2779564 . + . gene_id "RvY_07420"; transcript_id "RvY_07420.1"; Scaffold003 rebuild transcript 2781205 2785255 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[LEM]|[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold003 rebuild exon 2781205 2781347 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2782386 2782550 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2782666 2782877 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2783168 2783449 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2783553 2783698 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2783782 2784067 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2784269 2784618 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2784693 2784849 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild exon 2785086 2785255 . + . gene_id "RvY_07421"; transcript_id "RvY_07421.1"; Scaffold003 rebuild transcript 2785662 2786964 . - . gene_id "RvY_07422"; transcript_id "RvY_07422.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2785662 2786008 . - . gene_id "RvY_07422"; transcript_id "RvY_07422.1"; Scaffold003 rebuild exon 2786068 2786753 . - . gene_id "RvY_07422"; transcript_id "RvY_07422.1"; Scaffold003 rebuild exon 2786813 2786964 . - . gene_id "RvY_07422"; transcript_id "RvY_07422.1"; Scaffold003 rebuild transcript 2787778 2788670 . + . gene_id "RvY_07423"; transcript_id "RvY_07423.1"; gene_name "COG1875"; annotation "hypothetical protein."; Pfam "[PIN_4] PIN domain"; CDD "NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]"; Scaffold003 rebuild exon 2787778 2788226 . + . gene_id "RvY_07423"; transcript_id "RvY_07423.1"; Scaffold003 rebuild exon 2788331 2788670 . + . gene_id "RvY_07423"; transcript_id "RvY_07423.1"; Scaffold003 rebuild transcript 2789385 2791595 . + . gene_id "RvY_07424"; transcript_id "RvY_07424.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2789385 2789475 . + . gene_id "RvY_07424"; transcript_id "RvY_07424.1"; Scaffold003 rebuild exon 2789559 2789690 . + . gene_id "RvY_07424"; transcript_id "RvY_07424.1"; Scaffold003 rebuild exon 2790279 2790539 . + . gene_id "RvY_07424"; transcript_id "RvY_07424.1"; Scaffold003 rebuild exon 2790829 2791595 . + . gene_id "RvY_07424"; transcript_id "RvY_07424.1"; Scaffold003 rebuild transcript 2791616 2793084 . - . gene_id "RvY_07425"; transcript_id "RvY_07425.1"; gene_name "nuc_hydro_CeIAG"; annotation "hypothetical protein."; Pfam "[IU_nuc_hydro] Inosine-uridine preferring nucleoside hydrolase"; CDD "nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR)."; Scaffold003 rebuild exon 2791616 2791996 . - . gene_id "RvY_07425"; transcript_id "RvY_07425.1"; Scaffold003 rebuild exon 2792064 2792206 . - . gene_id "RvY_07425"; transcript_id "RvY_07425.1"; Scaffold003 rebuild exon 2792288 2792591 . - . gene_id "RvY_07425"; transcript_id "RvY_07425.1"; Scaffold003 rebuild exon 2792713 2792759 . - . gene_id "RvY_07425"; transcript_id "RvY_07425.1"; Scaffold003 rebuild exon 2792916 2793084 . - . gene_id "RvY_07425"; transcript_id "RvY_07425.1"; Scaffold003 rebuild transcript 2793926 2796486 . - . gene_id "RvY_07426"; transcript_id "RvY_07426.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR70_RAT(e-value:8.4e-19;bit-score:92.0)"; Scaffold003 rebuild exon 2793926 2794437 . - . gene_id "RvY_07426"; transcript_id "RvY_07426.1"; Scaffold003 rebuild exon 2794721 2795088 . - . gene_id "RvY_07426"; transcript_id "RvY_07426.1"; Scaffold003 rebuild exon 2795154 2795434 . - . gene_id "RvY_07426"; transcript_id "RvY_07426.1"; Scaffold003 rebuild exon 2795496 2796370 . - . gene_id "RvY_07426"; transcript_id "RvY_07426.1"; Scaffold003 rebuild exon 2796438 2796486 . - . gene_id "RvY_07426"; transcript_id "RvY_07426.1"; Scaffold003 rebuild transcript 2798044 2800936 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; gene_name "APEH"; annotation "acylaminoacyl-peptidase [EC:3.4.19.1]"; Pfam "[PD40] WD40-like Beta Propeller Repeat|[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Peptidase_S9] Prolyl oligopeptidase family"; CDD "Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]"; EC "EC3.4.19.1"; KO "K01303"; similar_genes "ACPH_BOVIN(e-value:3.1e-12;bit-score:70.0)"; Scaffold003 rebuild exon 2798044 2798384 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2798450 2798619 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2798677 2798825 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2798906 2799043 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2799107 2799364 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2799430 2799888 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2799948 2800110 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2800195 2800583 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2800640 2800716 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild exon 2800789 2800936 . + . gene_id "RvY_07427"; transcript_id "RvY_07427.1"; Scaffold003 rebuild transcript 2801414 2803874 . - . gene_id "RvY_07428"; transcript_id "RvY_07428.1"; gene_name "COG1875"; annotation "hypothetical protein."; Pfam "[PIN_4] PIN domain"; CDD "NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]"; Scaffold003 rebuild exon 2801414 2802021 . - . gene_id "RvY_07428"; transcript_id "RvY_07428.1"; Scaffold003 rebuild exon 2802081 2802394 . - . gene_id "RvY_07428"; transcript_id "RvY_07428.1"; Scaffold003 rebuild exon 2802635 2803250 . - . gene_id "RvY_07428"; transcript_id "RvY_07428.1"; Scaffold003 rebuild exon 2803374 2803733 . - . gene_id "RvY_07428"; transcript_id "RvY_07428.1"; Scaffold003 rebuild exon 2803796 2803874 . - . gene_id "RvY_07428"; transcript_id "RvY_07428.1"; Scaffold003 rebuild transcript 2804933 2805264 . + . gene_id "RvY_07429"; transcript_id "RvY_07429.1"; annotation "hypothetical protein."; Pfam "[DUF1903]"; Scaffold003 rebuild exon 2804933 2804984 . + . gene_id "RvY_07429"; transcript_id "RvY_07429.1"; Scaffold003 rebuild exon 2805122 2805264 . + . gene_id "RvY_07429"; transcript_id "RvY_07429.1"; Scaffold003 rebuild transcript 2805292 2807058 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.1"; gene_name "(1)K05906(2)Prenylcys_lyase"; annotation "(1)prenylcysteine oxidase [EC:1.8.3.5](2)hypothetical protein."; Pfam "[Prenylcys_lyase] Prenylcysteine lyase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "Prenylcysteine lyase. This family contains prenylcysteine lyases (EC:1.8.3.5) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps."; EC "(1)EC1.8.3.5"; KO "(1)K05906"; Scaffold003 rebuild exon 2805292 2805382 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.1"; Scaffold003 rebuild exon 2805473 2805679 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.1"; Scaffold003 rebuild exon 2805749 2806144 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.1"; Scaffold003 rebuild exon 2806253 2806564 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.1"; Scaffold003 rebuild exon 2806628 2807058 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.1"; Scaffold003 rebuild transcript 2805292 2806572 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.2"; gene_name "(1)K05906(2)Prenylcys_lyase"; annotation "(1)prenylcysteine oxidase [EC:1.8.3.5](2)hypothetical protein."; Pfam "[Prenylcys_lyase] Prenylcysteine lyase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "Prenylcysteine lyase. This family contains prenylcysteine lyases (EC:1.8.3.5) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps."; EC "(1)EC1.8.3.5"; KO "(1)K05906"; Scaffold003 rebuild exon 2805292 2805382 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.2"; Scaffold003 rebuild exon 2805473 2805679 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.2"; Scaffold003 rebuild exon 2805749 2806144 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.2"; Scaffold003 rebuild exon 2806253 2806572 . + . gene_id "RvY_07430"; transcript_id "RvY_07430.2"; Scaffold003 rebuild transcript 2807546 2808142 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2807546 2807882 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.1"; Scaffold003 rebuild exon 2808051 2808142 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.1"; Scaffold003 rebuild transcript 2807199 2807612 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2807199 2807612 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.2"; Scaffold003 rebuild transcript 2807546 2807890 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2807546 2807890 . + . gene_id "RvY_07431"; transcript_id "RvY_07431.3"; Scaffold003 rebuild transcript 2811094 2814488 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; annotation "hypothetical protein."; Pfam "[PLDc] Phospholipase D Active site motif|[PLDc_3] PLD-like domain|[PLDc_2] PLD-like domain"; EC "EC3.1.4.4"; similar_genes "PLD3_XENLA(e-value:2.5e-20;bit-score:97.0)"; Scaffold003 rebuild exon 2811094 2811140 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2811261 2811380 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2811662 2811975 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2812044 2812146 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2812332 2812572 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2812658 2812797 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2812861 2812931 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2813926 2814017 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2814099 2814201 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild exon 2814280 2814488 . + . gene_id "RvY_07432"; transcript_id "RvY_07432.1"; Scaffold003 rebuild transcript 2814856 2815398 . - . gene_id "RvY_07433"; transcript_id "RvY_07433.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2814856 2815056 . - . gene_id "RvY_07433"; transcript_id "RvY_07433.1"; Scaffold003 rebuild exon 2815165 2815398 . - . gene_id "RvY_07433"; transcript_id "RvY_07433.1"; Scaffold003 rebuild transcript 2815793 2820040 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.1"; gene_name "PSMD9"; annotation "26S proteasome non-ATPase regulatory subunit 9"; KO "K06693"; similar_genes "PSMD9_HUMAN(e-value:9.7e-20;bit-score:95.0)"; Scaffold003 rebuild exon 2815793 2815954 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.1"; Scaffold003 rebuild exon 2816029 2816131 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.1"; Scaffold003 rebuild exon 2816222 2816403 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.1"; Scaffold003 rebuild exon 2816465 2816655 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.1"; Scaffold003 rebuild exon 2819938 2820040 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.1"; Scaffold003 rebuild transcript 2815793 2819746 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.2"; gene_name "PSMD9"; annotation "26S proteasome non-ATPase regulatory subunit 9"; KO "K06693"; similar_genes "PSMD9_HUMAN(e-value:9.7e-20;bit-score:95.0)"; Scaffold003 rebuild exon 2815793 2815954 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.2"; Scaffold003 rebuild exon 2816029 2816131 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.2"; Scaffold003 rebuild exon 2816222 2816403 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.2"; Scaffold003 rebuild exon 2816465 2816655 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.2"; Scaffold003 rebuild exon 2819710 2819746 . + . gene_id "RvY_07434"; transcript_id "RvY_07434.2"; Scaffold003 rebuild transcript 2820173 2821842 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2820173 2820398 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild exon 2820469 2820634 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild exon 2820712 2820931 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild exon 2820987 2821121 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild exon 2821196 2821385 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild exon 2821450 2821539 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild exon 2821613 2821842 . + . gene_id "RvY_07435"; transcript_id "RvY_07435.1"; Scaffold003 rebuild transcript 2823457 2824308 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2823457 2823757 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.1"; Scaffold003 rebuild exon 2823848 2823937 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.1"; Scaffold003 rebuild exon 2824043 2824308 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.1"; Scaffold003 rebuild transcript 2823457 2824142 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2823457 2823498 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.2"; Scaffold003 rebuild exon 2823564 2823757 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.2"; Scaffold003 rebuild exon 2823848 2823937 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.2"; Scaffold003 rebuild exon 2824043 2824142 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.2"; Scaffold003 rebuild transcript 2823457 2823816 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2823457 2823816 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.3"; Scaffold003 rebuild transcript 2823185 2823679 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2823185 2823289 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.4"; Scaffold003 rebuild exon 2823360 2823498 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.4"; Scaffold003 rebuild exon 2823564 2823679 . + . gene_id "RvY_07436"; transcript_id "RvY_07436.4"; Scaffold003 rebuild transcript 2824994 2828025 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; gene_name "(1,2)3a01204(3)ABCG_White"; annotation "hypothetical protein."; Pfam "[ABC_tran] ABC transporter"; CDD "(1,2)The Eye Pigment Precursor Transporter (EPP) Family protein.(3)The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners."; Scaffold003 rebuild exon 2824994 2825422 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2825691 2825940 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2826020 2826292 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2826461 2826586 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2826659 2826970 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2827033 2827363 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2827572 2827821 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild exon 2827912 2828025 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.1"; Scaffold003 rebuild transcript 2825754 2827857 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; gene_name "(1,2)3a01204(3)ABCG_White"; annotation "hypothetical protein."; Pfam "[ABC_tran] ABC transporter"; CDD "(1,2)The Eye Pigment Precursor Transporter (EPP) Family protein.(3)The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners."; Scaffold003 rebuild exon 2825754 2825940 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; Scaffold003 rebuild exon 2826020 2826292 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; Scaffold003 rebuild exon 2826461 2826586 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; Scaffold003 rebuild exon 2826659 2826970 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; Scaffold003 rebuild exon 2827033 2827363 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; Scaffold003 rebuild exon 2827572 2827857 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.2"; Scaffold003 rebuild transcript 2824994 2827014 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.3"; gene_name "(1,2)3a01204(3)ABCG_White"; annotation "hypothetical protein."; Pfam "[ABC_tran] ABC transporter"; CDD "(1,2)The Eye Pigment Precursor Transporter (EPP) Family protein.(3)The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners."; Scaffold003 rebuild exon 2824994 2825422 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.3"; Scaffold003 rebuild exon 2825691 2825940 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.3"; Scaffold003 rebuild exon 2826020 2826292 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.3"; Scaffold003 rebuild exon 2826461 2826586 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.3"; Scaffold003 rebuild exon 2826659 2827014 . + . gene_id "RvY_07437"; transcript_id "RvY_07437.3"; Scaffold003 rebuild transcript 2828680 2830053 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; gene_name "(1)CBR(2)FabG"; annotation "(1)carbonyl reductase (NADPH) [EC:1.1.1.184](2)hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase|[KR]"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Validated(2)Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.184"; KO "(1)K00079"; similar_genes "(1)CBR1_BOVIN(e-value:5.3e-12;bit-score:69.0)(2)CBR1_PIG(e-value:2.2e-06;bit-score:50.0)"; Scaffold003 rebuild exon 2828680 2828709 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild exon 2828819 2828906 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild exon 2829042 2829211 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild exon 2829277 2829389 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild exon 2829473 2829598 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild exon 2829659 2829803 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild exon 2829868 2830053 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.1"; Scaffold003 rebuild transcript 2829244 2830053 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.2"; gene_name "(1)CBR(2)FabG"; annotation "(1)carbonyl reductase (NADPH) [EC:1.1.1.184](2)hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase|[KR]"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Validated(2)Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.184"; KO "(1)K00079"; similar_genes "(1)CBR1_BOVIN(e-value:5.3e-12;bit-score:69.0)(2)CBR1_PIG(e-value:2.2e-06;bit-score:50.0)"; Scaffold003 rebuild exon 2829244 2829389 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.2"; Scaffold003 rebuild exon 2829473 2829598 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.2"; Scaffold003 rebuild exon 2829659 2829803 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.2"; Scaffold003 rebuild exon 2829868 2830053 . + . gene_id "RvY_07438"; transcript_id "RvY_07438.2"; Scaffold003 rebuild transcript 2831272 2832326 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 2831272 2831274 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.1"; Scaffold003 rebuild exon 2831803 2832072 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.1"; Scaffold003 rebuild exon 2832145 2832179 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.1"; Scaffold003 rebuild exon 2832251 2832326 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.1"; Scaffold003 rebuild transcript 2831663 2832183 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 2831663 2831728 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.2"; Scaffold003 rebuild exon 2831803 2832072 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.2"; Scaffold003 rebuild exon 2832145 2832183 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.2"; Scaffold003 rebuild transcript 2832256 2832591 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.3"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 2832256 2832591 . + . gene_id "RvY_07439"; transcript_id "RvY_07439.3"; Scaffold003 rebuild transcript 2833225 2833689 . + . gene_id "RvY_07440"; transcript_id "RvY_07440.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2833225 2833689 . + . gene_id "RvY_07440"; transcript_id "RvY_07440.1"; Scaffold003 rebuild transcript 2833715 2833918 . + . gene_id "RvY_07441"; transcript_id "RvY_07441.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2833715 2833918 . + . gene_id "RvY_07441"; transcript_id "RvY_07441.1"; Scaffold003 rebuild transcript 2834416 2835859 . - . gene_id "RvY_07442"; transcript_id "RvY_07442.1"; gene_name "DC_UbP_C"; annotation "putative Ubiquitin domain-containing protein 1"; Pfam "[ubiquitin] Ubiquitin family"; CDD "DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis."; similar_genes "UBTD1_BOVIN(e-value:7.0e-31;bit-score:132.0)"; Scaffold003 rebuild exon 2834416 2834536 . - . gene_id "RvY_07442"; transcript_id "RvY_07442.1"; Scaffold003 rebuild exon 2834658 2834796 . - . gene_id "RvY_07442"; transcript_id "RvY_07442.1"; Scaffold003 rebuild exon 2834850 2835047 . - . gene_id "RvY_07442"; transcript_id "RvY_07442.1"; Scaffold003 rebuild exon 2835148 2835327 . - . gene_id "RvY_07442"; transcript_id "RvY_07442.1"; Scaffold003 rebuild exon 2835688 2835859 . - . gene_id "RvY_07442"; transcript_id "RvY_07442.1"; Scaffold003 rebuild transcript 2836520 2836822 . + . gene_id "RvY_07443"; transcript_id "RvY_07443.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2836520 2836822 . + . gene_id "RvY_07443"; transcript_id "RvY_07443.1"; Scaffold003 rebuild transcript 2837035 2842728 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; gene_name "MRP_assoc_pro"; annotation "putative Multidrug resistance-associated protein 7"; Pfam "[ArgK] ArgK protein|[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[T2SE] Type II/IV secretion system protein|[ABC_membrane] ABC transporter transmembrane region|[AAA_17] AAA domain|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "MRP7_HUMAN(e-value:1.0e-29;bit-score:128.0)"; Scaffold003 rebuild exon 2837035 2837280 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2837350 2837599 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2837677 2837810 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2837892 2838011 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2838099 2838173 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2838242 2838327 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2838388 2838650 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2838712 2839171 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2839323 2840509 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2840805 2841272 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2841482 2841880 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild exon 2841950 2842728 . - . gene_id "RvY_07444"; transcript_id "RvY_07444.1"; Scaffold003 rebuild transcript 2841536 2841727 . + . gene_id "RvY_07445"; transcript_id "RvY_07445.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2841536 2841727 . + . gene_id "RvY_07445"; transcript_id "RvY_07445.1"; Scaffold003 rebuild transcript 2843573 2843960 . - . gene_id "RvY_07446"; transcript_id "RvY_07446.1"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GCY_STRPU(e-value:1.0e-06;bit-score:51.0)"; Scaffold003 rebuild exon 2843573 2843647 . - . gene_id "RvY_07446"; transcript_id "RvY_07446.1"; Scaffold003 rebuild exon 2843736 2843833 . - . gene_id "RvY_07446"; transcript_id "RvY_07446.1"; Scaffold003 rebuild exon 2843894 2843960 . - . gene_id "RvY_07446"; transcript_id "RvY_07446.1"; Scaffold003 rebuild transcript 2845167 2846988 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; annotation "hypothetical protein."; Pfam "[NIT] Nitrate and nitrite sensing"; Scaffold003 rebuild exon 2845167 2845397 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild exon 2845467 2845645 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild exon 2845724 2845798 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild exon 2846002 2846198 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild exon 2846279 2846404 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild exon 2846526 2846737 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild exon 2846809 2846988 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.1"; Scaffold003 rebuild transcript 2845398 2846988 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; annotation "hypothetical protein."; Pfam "[NIT] Nitrate and nitrite sensing"; Scaffold003 rebuild exon 2845398 2845645 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; Scaffold003 rebuild exon 2845724 2845798 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; Scaffold003 rebuild exon 2846002 2846198 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; Scaffold003 rebuild exon 2846279 2846401 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; Scaffold003 rebuild exon 2846526 2846737 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; Scaffold003 rebuild exon 2846809 2846988 . - . gene_id "RvY_07447"; transcript_id "RvY_07447.2"; Scaffold003 rebuild transcript 2850492 2851325 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; annotation "putative Atrial natriuretic peptide receptor 2"; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:9.9e-41;bit-score:164.0)"; Scaffold003 rebuild exon 2850492 2850608 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; Scaffold003 rebuild exon 2850677 2850768 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; Scaffold003 rebuild exon 2850850 2850899 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; Scaffold003 rebuild exon 2850999 2851047 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; Scaffold003 rebuild exon 2851113 2851260 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; Scaffold003 rebuild exon 2851323 2851325 . - . gene_id "RvY_07448"; transcript_id "RvY_07448.1"; Scaffold003 rebuild transcript 2851892 2854103 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; gene_name "(2,3)CYCc"; annotation "hypothetical protein."; Pfam "(1)[NIT] Nitrate and nitrite sensing|(2,3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3)EC4.6.1.2"; similar_genes "(2,3)ANPRB_RAT(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 2851892 2851933 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2852123 2852218 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2852281 2852519 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2852619 2852693 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2852959 2853155 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2853305 2853427 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2853547 2853567 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2853667 2853794 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild exon 2853981 2854103 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.1"; Scaffold003 rebuild transcript 2851399 2852844 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; gene_name "(2,3)CYCc"; annotation "hypothetical protein."; Pfam "(1)[NIT] Nitrate and nitrite sensing|(2,3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3)EC4.6.1.2"; similar_genes "(2,3)ANPRB_RAT(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 2851399 2851500 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; Scaffold003 rebuild exon 2851593 2851641 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; Scaffold003 rebuild exon 2851705 2851991 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; Scaffold003 rebuild exon 2852123 2852218 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; Scaffold003 rebuild exon 2852281 2852519 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; Scaffold003 rebuild exon 2852586 2852844 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.2"; Scaffold003 rebuild transcript 2851399 2853037 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; gene_name "(2,3)CYCc"; annotation "hypothetical protein."; Pfam "(1)[NIT] Nitrate and nitrite sensing|(2,3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3)EC4.6.1.2"; similar_genes "(2,3)ANPRB_RAT(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 2851399 2851500 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild exon 2851593 2851641 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild exon 2851705 2851991 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild exon 2852123 2852218 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild exon 2852281 2852519 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild exon 2852586 2852693 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild exon 2852959 2853037 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.3"; Scaffold003 rebuild transcript 2852954 2854367 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.4"; gene_name "(2,3)CYCc"; annotation "hypothetical protein."; Pfam "(1)[NIT] Nitrate and nitrite sensing|(2,3)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2,3)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(2,3)EC4.6.1.2"; similar_genes "(2,3)ANPRB_RAT(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 2852954 2853155 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.4"; Scaffold003 rebuild exon 2853305 2853427 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.4"; Scaffold003 rebuild exon 2853547 2853794 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.4"; Scaffold003 rebuild exon 2853981 2854367 . - . gene_id "RvY_07449"; transcript_id "RvY_07449.4"; Scaffold003 rebuild transcript 2855611 2856009 . + . gene_id "RvY_07450"; transcript_id "RvY_07450.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold003 rebuild exon 2855611 2856009 . + . gene_id "RvY_07450"; transcript_id "RvY_07450.1"; Scaffold003 rebuild transcript 2855626 2856075 . - . gene_id "RvY_07451"; transcript_id "RvY_07451.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2855626 2856075 . - . gene_id "RvY_07451"; transcript_id "RvY_07451.1"; Scaffold003 rebuild transcript 2857121 2857675 . + . gene_id "RvY_07452"; transcript_id "RvY_07452.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2857121 2857183 . + . gene_id "RvY_07452"; transcript_id "RvY_07452.1"; Scaffold003 rebuild exon 2857283 2857675 . + . gene_id "RvY_07452"; transcript_id "RvY_07452.1"; Scaffold003 rebuild transcript 2857176 2857628 . + . gene_id "RvY_07452"; transcript_id "RvY_07452.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2857176 2857183 . + . gene_id "RvY_07452"; transcript_id "RvY_07452.2"; Scaffold003 rebuild exon 2857283 2857628 . + . gene_id "RvY_07452"; transcript_id "RvY_07452.2"; Scaffold003 rebuild transcript 2857974 2860222 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; gene_name "SMYD"; annotation "SET and MYND domain-containing protein"; Pfam "[zf-MYND] MYND finger"; KO "K11426"; Scaffold003 rebuild exon 2857974 2858645 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild exon 2858881 2858991 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild exon 2859069 2859376 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild exon 2859443 2859515 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild exon 2859579 2859689 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild exon 2859950 2860013 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild exon 2860119 2860222 . - . gene_id "RvY_07453"; transcript_id "RvY_07453.1"; Scaffold003 rebuild transcript 2867800 2868648 . + . gene_id "RvY_07454"; transcript_id "RvY_07454.1"; gene_name "KCNKN"; annotation "putative Two pore potassium channel protein sup-9"; Pfam "[Ion_trans_2] Ion channel"; KO "K05323"; similar_genes "SUP9_CAEEL(e-value:4.6e-30;bit-score:129.0)"; Scaffold003 rebuild exon 2867800 2868648 . + . gene_id "RvY_07454"; transcript_id "RvY_07454.1"; Scaffold003 rebuild transcript 2870182 2870727 . - . gene_id "RvY_07455"; transcript_id "RvY_07455.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2870182 2870312 . - . gene_id "RvY_07455"; transcript_id "RvY_07455.1"; Scaffold003 rebuild exon 2870469 2870727 . - . gene_id "RvY_07455"; transcript_id "RvY_07455.1"; Scaffold003 rebuild transcript 2870182 2871183 . - . gene_id "RvY_07455"; transcript_id "RvY_07455.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2870182 2870312 . - . gene_id "RvY_07455"; transcript_id "RvY_07455.2"; Scaffold003 rebuild exon 2870937 2871183 . - . gene_id "RvY_07455"; transcript_id "RvY_07455.2"; Scaffold003 rebuild transcript 2871209 2871583 . - . gene_id "RvY_07456"; transcript_id "RvY_07456.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2871209 2871583 . - . gene_id "RvY_07456"; transcript_id "RvY_07456.1"; Scaffold003 rebuild transcript 2871971 2874833 . - . gene_id "RvY_07457"; transcript_id "RvY_07457.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2871971 2872620 . - . gene_id "RvY_07457"; transcript_id "RvY_07457.1"; Scaffold003 rebuild exon 2872680 2873159 . - . gene_id "RvY_07457"; transcript_id "RvY_07457.1"; Scaffold003 rebuild exon 2873222 2873659 . - . gene_id "RvY_07457"; transcript_id "RvY_07457.1"; Scaffold003 rebuild exon 2873720 2874833 . - . gene_id "RvY_07457"; transcript_id "RvY_07457.1"; Scaffold003 rebuild transcript 2875549 2876234 . + . gene_id "RvY_07458"; transcript_id "RvY_07458.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2875549 2875701 . + . gene_id "RvY_07458"; transcript_id "RvY_07458.1"; Scaffold003 rebuild exon 2876115 2876234 . + . gene_id "RvY_07458"; transcript_id "RvY_07458.1"; Scaffold003 rebuild transcript 2876879 2877058 . - . gene_id "RvY_07459"; transcript_id "RvY_07459.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2876879 2877058 . - . gene_id "RvY_07459"; transcript_id "RvY_07459.1"; Scaffold003 rebuild transcript 2877155 2878215 . - . gene_id "RvY_07460"; transcript_id "RvY_07460.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2877155 2877308 . - . gene_id "RvY_07460"; transcript_id "RvY_07460.1"; Scaffold003 rebuild exon 2877370 2877693 . - . gene_id "RvY_07460"; transcript_id "RvY_07460.1"; Scaffold003 rebuild exon 2877767 2878215 . - . gene_id "RvY_07460"; transcript_id "RvY_07460.1"; Scaffold003 rebuild transcript 2879835 2881925 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2879835 2880205 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; Scaffold003 rebuild exon 2880322 2880475 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; Scaffold003 rebuild exon 2880697 2880928 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; Scaffold003 rebuild exon 2881129 2881245 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; Scaffold003 rebuild exon 2881348 2881431 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; Scaffold003 rebuild exon 2881756 2881925 . + . gene_id "RvY_07461"; transcript_id "RvY_07461.1"; Scaffold003 rebuild transcript 2882829 2886229 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2882829 2883173 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild exon 2883244 2883400 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild exon 2883526 2883698 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild exon 2883912 2884377 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild exon 2885477 2885893 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild exon 2885999 2886121 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild exon 2886186 2886229 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.1"; Scaffold003 rebuild transcript 2882829 2884535 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2882829 2883173 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.2"; Scaffold003 rebuild exon 2883244 2883400 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.2"; Scaffold003 rebuild exon 2883526 2883698 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.2"; Scaffold003 rebuild exon 2883912 2884535 . + . gene_id "RvY_07462"; transcript_id "RvY_07462.2"; Scaffold003 rebuild transcript 2887137 2888177 . - . gene_id "RvY_07463"; transcript_id "RvY_07463.1"; gene_name "HAAO"; annotation "putative 3-hydroxyanthranilate 3,4-dioxygenase"; Pfam "[3-HAO] 3-hydroxyanthranilic acid dioxygenase"; EC "EC1.13.11.6"; KO "K00452"; similar_genes "3HAO_NEMVE(e-value:1.6e-30;bit-score:130.0)"; Scaffold003 rebuild exon 2887137 2887918 . - . gene_id "RvY_07463"; transcript_id "RvY_07463.1"; Scaffold003 rebuild exon 2888021 2888177 . - . gene_id "RvY_07463"; transcript_id "RvY_07463.1"; Scaffold003 rebuild transcript 2889102 2890578 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold003 rebuild exon 2889102 2889282 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild exon 2889341 2889364 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild exon 2889427 2889458 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild exon 2889577 2889643 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild exon 2889712 2889740 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild exon 2889834 2890304 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild exon 2890519 2890578 . - . gene_id "RvY_07464"; transcript_id "RvY_07464.1"; Scaffold003 rebuild transcript 2891465 2892990 . - . gene_id "RvY_07465"; transcript_id "RvY_07465.1"; gene_name "Macoilin"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Transmembrane protein. This entry is a highly conserved protein present in eukaryotes."; Scaffold003 rebuild exon 2891465 2891606 . - . gene_id "RvY_07465"; transcript_id "RvY_07465.1"; Scaffold003 rebuild exon 2891674 2891729 . - . gene_id "RvY_07465"; transcript_id "RvY_07465.1"; Scaffold003 rebuild exon 2891791 2891857 . - . gene_id "RvY_07465"; transcript_id "RvY_07465.1"; Scaffold003 rebuild exon 2891937 2892841 . - . gene_id "RvY_07465"; transcript_id "RvY_07465.1"; Scaffold003 rebuild exon 2892925 2892990 . - . gene_id "RvY_07465"; transcript_id "RvY_07465.1"; Scaffold003 rebuild transcript 2896198 2897731 . + . gene_id "RvY_07466"; transcript_id "RvY_07466.1"; annotation "hypothetical protein."; Pfam "[GRAM]"; Scaffold003 rebuild exon 2896198 2896291 . + . gene_id "RvY_07466"; transcript_id "RvY_07466.1"; Scaffold003 rebuild exon 2896406 2896608 . + . gene_id "RvY_07466"; transcript_id "RvY_07466.1"; Scaffold003 rebuild exon 2896842 2897338 . + . gene_id "RvY_07466"; transcript_id "RvY_07466.1"; Scaffold003 rebuild exon 2897414 2897612 . + . gene_id "RvY_07466"; transcript_id "RvY_07466.1"; Scaffold003 rebuild exon 2897696 2897731 . + . gene_id "RvY_07466"; transcript_id "RvY_07466.1"; Scaffold003 rebuild transcript 2898162 2898724 . - . gene_id "RvY_07467"; transcript_id "RvY_07467.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family"; Scaffold003 rebuild exon 2898162 2898493 . - . gene_id "RvY_07467"; transcript_id "RvY_07467.1"; Scaffold003 rebuild exon 2898604 2898724 . - . gene_id "RvY_07467"; transcript_id "RvY_07467.1"; Scaffold003 rebuild transcript 2899324 2903111 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; gene_name "SYF1"; annotation "Pre-mRNA-splicing factor SYF1"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[FAT]|[TPR_15] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat|[Suf] Suppressor of forked protein (Suf)"; KO "K12867"; similar_genes "SYF1_RAT(e-value:3.8e-125;bit-score:445.0)"; Scaffold003 rebuild exon 2899324 2899353 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2899447 2899598 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2899661 2899784 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2899844 2900041 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2900188 2900711 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2900772 2900973 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2901058 2901158 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2901236 2901512 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2901713 2902189 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2902473 2902641 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2902703 2902942 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild exon 2903026 2903111 . + . gene_id "RvY_07468"; transcript_id "RvY_07468.1"; Scaffold003 rebuild transcript 2903643 2906354 . - . gene_id "RvY_07469"; transcript_id "RvY_07469.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; Scaffold003 rebuild exon 2903643 2903869 . - . gene_id "RvY_07469"; transcript_id "RvY_07469.1"; Scaffold003 rebuild exon 2903934 2904053 . - . gene_id "RvY_07469"; transcript_id "RvY_07469.1"; Scaffold003 rebuild exon 2904113 2904275 . - . gene_id "RvY_07469"; transcript_id "RvY_07469.1"; Scaffold003 rebuild exon 2904653 2905473 . - . gene_id "RvY_07469"; transcript_id "RvY_07469.1"; Scaffold003 rebuild exon 2906288 2906354 . - . gene_id "RvY_07469"; transcript_id "RvY_07469.1"; Scaffold003 rebuild transcript 2907456 2910301 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; gene_name "DGAT1"; annotation "Diacylglycerol O-acyltransferase 1"; Pfam "[MBOAT] MBOAT, membrane-bound O-acyltransferase family"; CDD "Acyl-CoA cholesterol acyltransferase [Lipid metabolism]"; EC "EC2.3.1.20|EC2.3.1.76"; KO "K11155"; similar_genes "DGAT1_MOUSE(e-value:4.4e-58;bit-score:222.0)"; Scaffold003 rebuild exon 2907456 2907674 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2907889 2907976 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2908092 2908270 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2908546 2908671 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2908743 2908894 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2908969 2909121 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2909265 2909367 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2909464 2909602 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2909710 2909750 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2909871 2909958 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild exon 2910129 2910301 . - . gene_id "RvY_07470"; transcript_id "RvY_07470.1"; Scaffold003 rebuild transcript 2912104 2914631 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; gene_name "2a58"; annotation "putative Sodium-dependent phosphate transport protein 2B"; Pfam "[Na_Pi_cotrans] Na+/Pi-cotransporter"; CDD "Phosphate:Na+ Symporter (PNaS) Family."; similar_genes "NPT2B_BOVIN(e-value:2.4e-50;bit-score:196.0)"; Scaffold003 rebuild exon 2912104 2912194 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; Scaffold003 rebuild exon 2912254 2912454 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; Scaffold003 rebuild exon 2912528 2912800 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; Scaffold003 rebuild exon 2913079 2913395 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; Scaffold003 rebuild exon 2913466 2913592 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; Scaffold003 rebuild exon 2913655 2914631 . + . gene_id "RvY_07471"; transcript_id "RvY_07471.1"; Scaffold003 rebuild transcript 2914956 2924234 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; gene_name "LRRK1"; annotation "leucine-rich repeat kinase 1 [EC:2.7.11.1]"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[LRR_8] Leucine rich repeat|[Pkinase] Protein kinase domain|[Ras] Ras family|[Miro] Miro-like protein|[Pkinase_Tyr] Protein tyrosine kinase|[Ank_2] Ankyrin repeats (3 copies)|[LRR_7] Leucine rich repeat|[Ank_3] Ankyrin repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08843"; similar_genes "LRK1_CAEEL(e-value:1.4e-16;bit-score:84.0)"; Scaffold003 rebuild exon 2914956 2915386 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2915576 2916074 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2916218 2916607 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2916813 2917388 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2917458 2917824 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2918021 2918425 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2918499 2919322 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2919511 2920025 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2920121 2920394 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2920477 2920640 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2920700 2921170 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2921329 2921922 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2922156 2922780 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2922842 2922983 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2923071 2923194 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2923265 2923300 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2923367 2923532 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2923608 2923648 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2923763 2923939 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild exon 2924213 2924234 . - . gene_id "RvY_07472"; transcript_id "RvY_07472.1"; Scaffold003 rebuild transcript 2926003 2926662 . - . gene_id "RvY_07473"; transcript_id "RvY_07473.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2926003 2926662 . - . gene_id "RvY_07473"; transcript_id "RvY_07473.1"; Scaffold003 rebuild transcript 2926421 2926762 . - . gene_id "RvY_07473"; transcript_id "RvY_07473.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 2926421 2926762 . - . gene_id "RvY_07473"; transcript_id "RvY_07473.2"; Scaffold003 rebuild transcript 2930396 2932057 . + . gene_id "RvY_07474"; transcript_id "RvY_07474.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2930396 2931010 . + . gene_id "RvY_07474"; transcript_id "RvY_07474.1"; Scaffold003 rebuild exon 2931335 2931783 . + . gene_id "RvY_07474"; transcript_id "RvY_07474.1"; Scaffold003 rebuild exon 2931958 2932057 . + . gene_id "RvY_07474"; transcript_id "RvY_07474.1"; Scaffold003 rebuild transcript 2933087 2934944 . + . gene_id "RvY_07475"; transcript_id "RvY_07475.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2933087 2934419 . + . gene_id "RvY_07475"; transcript_id "RvY_07475.1"; Scaffold003 rebuild exon 2934643 2934778 . + . gene_id "RvY_07475"; transcript_id "RvY_07475.1"; Scaffold003 rebuild exon 2934872 2934944 . + . gene_id "RvY_07475"; transcript_id "RvY_07475.1"; Scaffold003 rebuild transcript 2935883 2938467 . + . gene_id "RvY_07476"; transcript_id "RvY_07476.1"; gene_name "rne"; annotation "hypothetical protein."; CDD "ribonuclease E; Reviewed"; Scaffold003 rebuild exon 2935883 2936399 . + . gene_id "RvY_07476"; transcript_id "RvY_07476.1"; Scaffold003 rebuild exon 2936715 2937077 . + . gene_id "RvY_07476"; transcript_id "RvY_07476.1"; Scaffold003 rebuild exon 2937144 2937258 . + . gene_id "RvY_07476"; transcript_id "RvY_07476.1"; Scaffold003 rebuild exon 2937342 2937625 . + . gene_id "RvY_07476"; transcript_id "RvY_07476.1"; Scaffold003 rebuild exon 2937962 2938467 . + . gene_id "RvY_07476"; transcript_id "RvY_07476.1"; Scaffold003 rebuild transcript 2938899 2939093 . - . gene_id "RvY_07477"; transcript_id "RvY_07477.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2938899 2939093 . - . gene_id "RvY_07477"; transcript_id "RvY_07477.1"; Scaffold003 rebuild transcript 2939416 2940811 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; gene_name "RNF41"; annotation "E3 ubiquitin-protein ligase NRDP1 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[USP8_interact] USP8 interacting|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K11981"; similar_genes "RNF41_PONAB(e-value:1.5e-22;bit-score:104.0)"; Scaffold003 rebuild exon 2939416 2939511 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; Scaffold003 rebuild exon 2939616 2939644 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; Scaffold003 rebuild exon 2939719 2939941 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; Scaffold003 rebuild exon 2940069 2940326 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; Scaffold003 rebuild exon 2940384 2940638 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; Scaffold003 rebuild exon 2940722 2940811 . + . gene_id "RvY_07478"; transcript_id "RvY_07478.1"; Scaffold003 rebuild transcript 2941160 2942484 . - . gene_id "RvY_07479"; transcript_id "RvY_07479.1"; gene_name "Cog4"; annotation "hypothetical protein."; Pfam "[COG4] COG4 transport protein"; CDD "COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport."; similar_genes "COG4_BOVIN(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 2941160 2941429 . - . gene_id "RvY_07479"; transcript_id "RvY_07479.1"; Scaffold003 rebuild exon 2941502 2941834 . - . gene_id "RvY_07479"; transcript_id "RvY_07479.1"; Scaffold003 rebuild exon 2941909 2941965 . - . gene_id "RvY_07479"; transcript_id "RvY_07479.1"; Scaffold003 rebuild exon 2942050 2942484 . - . gene_id "RvY_07479"; transcript_id "RvY_07479.1"; Scaffold003 rebuild transcript 2942699 2944132 . - . gene_id "RvY_07480"; transcript_id "RvY_07480.1"; annotation "hypothetical protein."; Pfam "[COG4] COG4 transport protein"; Scaffold003 rebuild exon 2942699 2943142 . - . gene_id "RvY_07480"; transcript_id "RvY_07480.1"; Scaffold003 rebuild exon 2943319 2943805 . - . gene_id "RvY_07480"; transcript_id "RvY_07480.1"; Scaffold003 rebuild exon 2943887 2943969 . - . gene_id "RvY_07480"; transcript_id "RvY_07480.1"; Scaffold003 rebuild exon 2944073 2944132 . - . gene_id "RvY_07480"; transcript_id "RvY_07480.1"; Scaffold003 rebuild transcript 2944731 2945264 . - . gene_id "RvY_07481"; transcript_id "RvY_07481.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2944731 2945264 . - . gene_id "RvY_07481"; transcript_id "RvY_07481.1"; Scaffold003 rebuild transcript 2944752 2945213 . + . gene_id "RvY_07482"; transcript_id "RvY_07482.1"; gene_name "ndk"; annotation "Nucleoside diphosphate kinase"; Pfam "[NDK] Nucleoside diphosphate kinase"; CDD "nucleoside diphosphate kinase; Provisional"; EC "EC2.7.4.6"; KO "K00940"; similar_genes "NDK_YEAST(e-value:6.6e-57;bit-score:218.0)"; Scaffold003 rebuild exon 2944752 2945213 . + . gene_id "RvY_07482"; transcript_id "RvY_07482.1"; Scaffold003 rebuild transcript 2945758 2948212 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; annotation "hypothetical protein."; Pfam "[TPR_12] Tetratricopeptide repeat"; Scaffold003 rebuild exon 2945758 2945967 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2946039 2946238 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2946310 2946538 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2946629 2946835 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2947122 2947210 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2947287 2947328 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2947413 2947556 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2947683 2947801 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2947882 2948001 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild exon 2948061 2948212 . - . gene_id "RvY_07483"; transcript_id "RvY_07483.1"; Scaffold003 rebuild transcript 2949216 2949698 . + . gene_id "RvY_07484"; transcript_id "RvY_07484.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2949216 2949698 . + . gene_id "RvY_07484"; transcript_id "RvY_07484.1"; Scaffold003 rebuild transcript 2950142 2952542 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; gene_name "NGLY1"; annotation "putative Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase"; Pfam "[Transglut_core] Transglutaminase-like superfamily|[Rad4] Rad4 transglutaminase-like domain|[DUF750]|[PUB]"; EC "EC3.5.1.52"; KO "K01456"; similar_genes "NGLY1_MACFA(e-value:4.7e-49;bit-score:192.0)"; Scaffold003 rebuild exon 2950142 2950473 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; Scaffold003 rebuild exon 2950541 2950675 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; Scaffold003 rebuild exon 2950790 2950985 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; Scaffold003 rebuild exon 2951044 2951317 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; Scaffold003 rebuild exon 2951379 2952329 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; Scaffold003 rebuild exon 2952412 2952542 . - . gene_id "RvY_07485"; transcript_id "RvY_07485.1"; Scaffold003 rebuild transcript 2952943 2955410 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; annotation "hypothetical protein."; Pfam "[zf-H2C2_2] Zinc-finger double domain"; Scaffold003 rebuild exon 2952943 2953224 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2953286 2953426 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2953497 2953734 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2953794 2953923 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2953983 2954276 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2954342 2954752 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2954829 2955252 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild exon 2955360 2955410 . - . gene_id "RvY_07486"; transcript_id "RvY_07486.1"; Scaffold003 rebuild transcript 2956042 2957974 . + . gene_id "RvY_07487"; transcript_id "RvY_07487.1"; gene_name "ate1"; annotation "putative Arginyl-tRNA--protein transferase 1"; Pfam "[ATE_N] Arginine-tRNA-protein transferase, N terminus|[ATE_C] Arginine-tRNA-protein transferase, C terminus"; EC "EC2.3.2.8"; KO "K00685"; similar_genes "ATE1_HUMAN(e-value:1.0e-29;bit-score:128.0)"; Scaffold003 rebuild exon 2956042 2956208 . + . gene_id "RvY_07487"; transcript_id "RvY_07487.1"; Scaffold003 rebuild exon 2956316 2956497 . + . gene_id "RvY_07487"; transcript_id "RvY_07487.1"; Scaffold003 rebuild exon 2956585 2957467 . + . gene_id "RvY_07487"; transcript_id "RvY_07487.1"; Scaffold003 rebuild exon 2957602 2957974 . + . gene_id "RvY_07487"; transcript_id "RvY_07487.1"; Scaffold003 rebuild transcript 2958584 2959252 . - . gene_id "RvY_07488"; transcript_id "RvY_07488.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2958584 2959252 . - . gene_id "RvY_07488"; transcript_id "RvY_07488.1"; Scaffold003 rebuild transcript 2958584 2959284 . - . gene_id "RvY_07488"; transcript_id "RvY_07488.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2958584 2959095 . - . gene_id "RvY_07488"; transcript_id "RvY_07488.2"; Scaffold003 rebuild exon 2959218 2959284 . - . gene_id "RvY_07488"; transcript_id "RvY_07488.2"; Scaffold003 rebuild transcript 2958923 2959138 . + . gene_id "RvY_07489"; transcript_id "RvY_07489.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2958923 2959138 . + . gene_id "RvY_07489"; transcript_id "RvY_07489.1"; Scaffold003 rebuild transcript 2962376 2963688 . + . gene_id "RvY_07490"; transcript_id "RvY_07490.1"; gene_name "MviM"; annotation "hypothetical protein."; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold|[NAD_binding_3] Homoserine dehydrogenase, NAD binding domain"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; Scaffold003 rebuild exon 2962376 2962673 . + . gene_id "RvY_07490"; transcript_id "RvY_07490.1"; Scaffold003 rebuild exon 2962739 2963017 . + . gene_id "RvY_07490"; transcript_id "RvY_07490.1"; Scaffold003 rebuild exon 2963084 2963688 . + . gene_id "RvY_07490"; transcript_id "RvY_07490.1"; Scaffold003 rebuild transcript 2963901 2969792 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; gene_name "SF3B3"; annotation "Splicing factor 3B subunit 3"; Pfam "[MMS1_N] Mono-functional DNA-alkylating methyl methanesulfonate N-term|[CPSF_A] CPSF A subunit region"; KO "K12830"; similar_genes "SF3B3_BOVIN(e-value:9.0e-307;bit-score:1048.0)"; Scaffold003 rebuild exon 2963901 2964041 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2964148 2964252 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2964308 2964451 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2964524 2964826 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2965017 2965511 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2965760 2965934 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2965997 2966151 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2966219 2966341 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2966399 2966710 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2966943 2967250 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2967318 2967486 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2967549 2967714 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2967919 2968022 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2968126 2968263 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2968337 2968591 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2969018 2969190 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2969258 2969351 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2969415 2969491 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild exon 2969567 2969792 . - . gene_id "RvY_07491"; transcript_id "RvY_07491.1"; Scaffold003 rebuild transcript 2970821 2972874 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 2970821 2970856 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild exon 2970932 2971178 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild exon 2971246 2971629 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild exon 2971707 2971993 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild exon 2972063 2972343 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild exon 2972459 2972581 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild exon 2972667 2972874 . + . gene_id "RvY_07492"; transcript_id "RvY_07492.1"; Scaffold003 rebuild transcript 2975161 2977881 . - . gene_id "RvY_07493"; transcript_id "RvY_07493.1"; gene_name "DM"; annotation "hypothetical protein."; Pfam "[DM] DM DNA binding domain|[DMA] DMRTA motif"; CDD "Doublesex DNA-binding motif."; similar_genes "DMT3A_DANRE(e-value:3.8e-21;bit-score:99.0)"; Scaffold003 rebuild exon 2975161 2976074 . - . gene_id "RvY_07493"; transcript_id "RvY_07493.1"; Scaffold003 rebuild exon 2977210 2977526 . - . gene_id "RvY_07493"; transcript_id "RvY_07493.1"; Scaffold003 rebuild exon 2977706 2977881 . - . gene_id "RvY_07493"; transcript_id "RvY_07493.1"; Scaffold003 rebuild transcript 2983224 2983469 . - . gene_id "RvY_07494"; transcript_id "RvY_07494.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 2983224 2983469 . - . gene_id "RvY_07494"; transcript_id "RvY_07494.1"; Scaffold003 rebuild transcript 2986380 2988033 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.1"; gene_name "(1,3,4)K00503"; annotation "(1)putative Dopamine beta-hydroxylase(2)hypothetical protein.(3,4)Dopamine beta-hydroxylase"; Pfam "(1,2)[DOMON]|(1,3,4)[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; EC "EC1.14.17.1"; KO "(1,3,4)K00503"; similar_genes "(1)DOPO_MOUSE(e-value:4.6e-28;bit-score:122.0)(2)DOPO_HORSE(e-value:3.5e-11;bit-score:66.0)(3)DOPO_MOUSE(e-value:3.1e-65;bit-score:246.0)(4)DOPO_MOUSE(e-value:6.0e-64;bit-score:241.0)"; Scaffold003 rebuild exon 2986380 2986714 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.1"; Scaffold003 rebuild exon 2986798 2986969 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.1"; Scaffold003 rebuild exon 2987041 2987322 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.1"; Scaffold003 rebuild exon 2987599 2988033 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.1"; Scaffold003 rebuild transcript 2986715 2988033 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.2"; gene_name "(1,3,4)K00503"; annotation "(1)putative Dopamine beta-hydroxylase(2)hypothetical protein.(3,4)Dopamine beta-hydroxylase"; Pfam "(1,2)[DOMON]|(1,3,4)[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; EC "EC1.14.17.1"; KO "(1,3,4)K00503"; similar_genes "(1)DOPO_MOUSE(e-value:4.6e-28;bit-score:122.0)(2)DOPO_HORSE(e-value:3.5e-11;bit-score:66.0)(3)DOPO_MOUSE(e-value:3.1e-65;bit-score:246.0)(4)DOPO_MOUSE(e-value:6.0e-64;bit-score:241.0)"; Scaffold003 rebuild exon 2986715 2986969 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.2"; Scaffold003 rebuild exon 2987041 2987322 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.2"; Scaffold003 rebuild exon 2987599 2988033 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.2"; Scaffold003 rebuild transcript 2985333 2986775 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.3"; gene_name "(1,3,4)K00503"; annotation "(1)putative Dopamine beta-hydroxylase(2)hypothetical protein.(3,4)Dopamine beta-hydroxylase"; Pfam "(1,2)[DOMON]|(1,3,4)[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; EC "EC1.14.17.1"; KO "(1,3,4)K00503"; similar_genes "(1)DOPO_MOUSE(e-value:4.6e-28;bit-score:122.0)(2)DOPO_HORSE(e-value:3.5e-11;bit-score:66.0)(3)DOPO_MOUSE(e-value:3.1e-65;bit-score:246.0)(4)DOPO_MOUSE(e-value:6.0e-64;bit-score:241.0)"; Scaffold003 rebuild exon 2985333 2985770 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.3"; Scaffold003 rebuild exon 2985878 2986060 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.3"; Scaffold003 rebuild exon 2986437 2986775 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.3"; Scaffold003 rebuild transcript 2985333 2986801 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.4"; gene_name "(1,3,4)K00503"; annotation "(1)putative Dopamine beta-hydroxylase(2)hypothetical protein.(3,4)Dopamine beta-hydroxylase"; Pfam "(1,2)[DOMON]|(1,3,4)[Cu2_monoox_C] Copper type II ascorbate-dependent monooxygenase, C-terminal domain|[Cu2_monooxygen] Copper type II ascorbate-dependent monooxygenase, N-terminal domain"; EC "EC1.14.17.1"; KO "(1,3,4)K00503"; similar_genes "(1)DOPO_MOUSE(e-value:4.6e-28;bit-score:122.0)(2)DOPO_HORSE(e-value:3.5e-11;bit-score:66.0)(3)DOPO_MOUSE(e-value:3.1e-65;bit-score:246.0)(4)DOPO_MOUSE(e-value:6.0e-64;bit-score:241.0)"; Scaffold003 rebuild exon 2985333 2985770 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.4"; Scaffold003 rebuild exon 2985878 2986060 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.4"; Scaffold003 rebuild exon 2986437 2986714 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.4"; Scaffold003 rebuild exon 2986798 2986801 . - . gene_id "RvY_07495"; transcript_id "RvY_07495.4"; Scaffold003 rebuild transcript 2988954 2993115 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; gene_name "ACIN1"; annotation "apoptotic chromatin condensation inducer in the nucleus"; Pfam "[SAP]"; CDD "transcription termination factor Rho; Provisional"; KO "K12875"; similar_genes "ACINU_MOUSE(e-value:2.0e-07;bit-score:54.0)"; Scaffold003 rebuild exon 2988954 2989166 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2989247 2989369 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2989568 2989647 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2989732 2990116 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2990238 2990345 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2990419 2990675 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2990944 2991185 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2991305 2991363 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2991442 2992304 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2992387 2992477 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2992827 2992913 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild exon 2992987 2993115 . - . gene_id "RvY_07496"; transcript_id "RvY_07496.1"; Scaffold003 rebuild transcript 2993737 2994042 . + . gene_id "RvY_07497"; transcript_id "RvY_07497.1"; gene_name "MRP-S33"; annotation "hypothetical protein."; Pfam "[MRP-S33] Mitochondrial ribosomal subunit S27"; CDD "Mitochondrial ribosomal subunit S27. This family of proteins corresponds to mitochondrial ribosomal subunit S27 in prokaryotes and to subunit S33 in humans. It is a small 106 residue protein.The evolutionary history of the mitoribosomal proteome that is encoded by a diverse subset of eukaryotic genomes, reveals an ancestral ribosome of alpha-proteobacterial descent that more than doubled its protein content in most eukaryotic lineages. Several new MRPs have originated via duplication of existing MRPs as well as by recruitment from outside of the mitoribosomal proteome."; Scaffold003 rebuild exon 2993737 2994042 . + . gene_id "RvY_07497"; transcript_id "RvY_07497.1"; Scaffold003 rebuild transcript 2994244 2995050 . - . gene_id "RvY_07498"; transcript_id "RvY_07498.1"; gene_name "RPP30"; annotation "ribonuclease P subunit Rpp30 [EC:3.1.26.5]"; Pfam "[RNase_P_p30] RNase P subunit p30"; EC "EC3.1.26.5"; KO "K03539"; Scaffold003 rebuild exon 2994244 2995050 . - . gene_id "RvY_07498"; transcript_id "RvY_07498.1"; Scaffold003 rebuild transcript 2997138 3000913 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; gene_name "CARS"; annotation "Cysteinyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[tRNA-synt_1e] tRNA synthetases class I (C) catalytic domain"; CDD "cysteinyl-tRNA synthetase; Validated"; EC "EC6.1.1.16"; KO "K01883"; similar_genes "SYCC_CHICK(e-value:7.4e-73;bit-score:271.0)"; Scaffold003 rebuild exon 2997138 2997281 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2997370 2997513 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2997586 2997822 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2997891 2998105 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2998201 2998241 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2998333 2998421 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2998491 2998954 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2999011 2999132 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2999206 2999294 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2999365 2999628 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2999703 2999801 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 2999863 2999959 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 3000048 3000136 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 3000236 3000327 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 3000392 3000489 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild exon 3000756 3000913 . - . gene_id "RvY_07499"; transcript_id "RvY_07499.1"; Scaffold003 rebuild transcript 3001471 3002282 . - . gene_id "RvY_07500"; transcript_id "RvY_07500.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3001471 3001631 . - . gene_id "RvY_07500"; transcript_id "RvY_07500.1"; Scaffold003 rebuild exon 3001888 3002017 . - . gene_id "RvY_07500"; transcript_id "RvY_07500.1"; Scaffold003 rebuild exon 3002076 3002282 . - . gene_id "RvY_07500"; transcript_id "RvY_07500.1"; Scaffold003 rebuild transcript 3003123 3008799 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; gene_name "SMARCA2_4"; annotation "ATP-dependent helicase brm"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[QLQ]|[Helicase_C] Helicase conserved C-terminal domain|[HSA]|[BRK]|[Bromodomain]"; EC "EC3.6.1.-"; KO "K11647"; similar_genes "BRM_DROME(e-value:1.2e-149;bit-score:526.0)"; Scaffold003 rebuild exon 3003123 3003383 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3003469 3003688 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3003759 3003918 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3003981 3004287 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3004369 3004542 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3004746 3005352 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3005524 3005747 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3005921 3006296 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3006473 3006838 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3007072 3007700 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3007756 3008055 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild exon 3008284 3008799 . + . gene_id "RvY_07501"; transcript_id "RvY_07501.1"; Scaffold003 rebuild transcript 3009299 3009920 . + . gene_id "RvY_07502"; transcript_id "RvY_07502.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3009299 3009424 . + . gene_id "RvY_07502"; transcript_id "RvY_07502.1"; Scaffold003 rebuild exon 3009687 3009920 . + . gene_id "RvY_07502"; transcript_id "RvY_07502.1"; Scaffold003 rebuild transcript 3010095 3011024 . - . gene_id "RvY_07503"; transcript_id "RvY_07503.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3010095 3010403 . - . gene_id "RvY_07503"; transcript_id "RvY_07503.1"; Scaffold003 rebuild exon 3010503 3010663 . - . gene_id "RvY_07503"; transcript_id "RvY_07503.1"; Scaffold003 rebuild exon 3010721 3011024 . - . gene_id "RvY_07503"; transcript_id "RvY_07503.1"; Scaffold003 rebuild transcript 3011060 3012674 . + . gene_id "RvY_07504"; transcript_id "RvY_07504.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3011060 3011169 . + . gene_id "RvY_07504"; transcript_id "RvY_07504.1"; Scaffold003 rebuild exon 3012578 3012674 . + . gene_id "RvY_07504"; transcript_id "RvY_07504.1"; Scaffold003 rebuild transcript 3014698 3016227 . - . gene_id "RvY_07505"; transcript_id "RvY_07505.1"; gene_name "SNAI2"; annotation "putative Protein escargot"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; KO "K05706"; similar_genes "ESCA_DROME(e-value:5.3e-46;bit-score:182.0)"; Scaffold003 rebuild exon 3014698 3014942 . - . gene_id "RvY_07505"; transcript_id "RvY_07505.1"; Scaffold003 rebuild exon 3015181 3015897 . - . gene_id "RvY_07505"; transcript_id "RvY_07505.1"; Scaffold003 rebuild exon 3016131 3016227 . - . gene_id "RvY_07505"; transcript_id "RvY_07505.1"; Scaffold003 rebuild transcript 3020951 3021907 . - . gene_id "RvY_07506"; transcript_id "RvY_07506.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3020951 3021112 . - . gene_id "RvY_07506"; transcript_id "RvY_07506.1"; Scaffold003 rebuild exon 3021334 3021673 . - . gene_id "RvY_07506"; transcript_id "RvY_07506.1"; Scaffold003 rebuild exon 3021774 3021907 . - . gene_id "RvY_07506"; transcript_id "RvY_07506.1"; Scaffold003 rebuild transcript 3021834 3022536 . + . gene_id "RvY_07507"; transcript_id "RvY_07507.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3021834 3022013 . + . gene_id "RvY_07507"; transcript_id "RvY_07507.1"; Scaffold003 rebuild exon 3022094 3022300 . + . gene_id "RvY_07507"; transcript_id "RvY_07507.1"; Scaffold003 rebuild exon 3022510 3022536 . + . gene_id "RvY_07507"; transcript_id "RvY_07507.1"; Scaffold003 rebuild transcript 3022034 3022312 . + . gene_id "RvY_07507"; transcript_id "RvY_07507.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3022034 3022312 . + . gene_id "RvY_07507"; transcript_id "RvY_07507.2"; Scaffold003 rebuild transcript 3022756 3025796 . - . gene_id "RvY_07508"; transcript_id "RvY_07508.1"; gene_name "PRPF40"; annotation "pre-mRNA-processing factor 40"; Pfam "[WW]|[FF]"; CDD "Splicing factor [RNA processing and modification]"; KO "K12821"; Scaffold003 rebuild exon 3022756 3023364 . - . gene_id "RvY_07508"; transcript_id "RvY_07508.1"; Scaffold003 rebuild exon 3023614 3023997 . - . gene_id "RvY_07508"; transcript_id "RvY_07508.1"; Scaffold003 rebuild exon 3024140 3024742 . - . gene_id "RvY_07508"; transcript_id "RvY_07508.1"; Scaffold003 rebuild exon 3025020 3025796 . - . gene_id "RvY_07508"; transcript_id "RvY_07508.1"; Scaffold003 rebuild transcript 3026240 3027099 . + . gene_id "RvY_07509"; transcript_id "RvY_07509.1"; annotation "hypothetical protein."; Pfam "[NEP] Uncharacterised conserved protein"; Scaffold003 rebuild exon 3026240 3026249 . + . gene_id "RvY_07509"; transcript_id "RvY_07509.1"; Scaffold003 rebuild exon 3026325 3026366 . + . gene_id "RvY_07509"; transcript_id "RvY_07509.1"; Scaffold003 rebuild exon 3026481 3026593 . + . gene_id "RvY_07509"; transcript_id "RvY_07509.1"; Scaffold003 rebuild exon 3026702 3026874 . + . gene_id "RvY_07509"; transcript_id "RvY_07509.1"; Scaffold003 rebuild exon 3026931 3027099 . + . gene_id "RvY_07509"; transcript_id "RvY_07509.1"; Scaffold003 rebuild transcript 3027876 3029680 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; gene_name "K08076"; annotation "astacin [EC:3.4.24.21]"; Pfam "[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.21"; KO "K08076"; similar_genes "NAS13_CAEEL(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 3027876 3027975 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3028052 3028182 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3028259 3028352 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3028413 3028533 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3028646 3028682 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3028774 3028915 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3029001 3029042 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild exon 3029280 3029680 . + . gene_id "RvY_07510"; transcript_id "RvY_07510.1"; Scaffold003 rebuild transcript 3030091 3031886 . - . gene_id "RvY_07511"; transcript_id "RvY_07511.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain|[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 3030091 3030636 . - . gene_id "RvY_07511"; transcript_id "RvY_07511.1"; Scaffold003 rebuild exon 3030718 3030927 . - . gene_id "RvY_07511"; transcript_id "RvY_07511.1"; Scaffold003 rebuild exon 3030997 3031502 . - . gene_id "RvY_07511"; transcript_id "RvY_07511.1"; Scaffold003 rebuild exon 3031583 3031886 . - . gene_id "RvY_07511"; transcript_id "RvY_07511.1"; Scaffold003 rebuild transcript 3034034 3036634 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.1"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; Scaffold003 rebuild exon 3034034 3034938 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.1"; Scaffold003 rebuild exon 3035001 3035311 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.1"; Scaffold003 rebuild exon 3035391 3036030 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.1"; Scaffold003 rebuild exon 3036088 3036634 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.1"; Scaffold003 rebuild transcript 3034034 3035433 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.2"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; Scaffold003 rebuild exon 3034034 3034938 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.2"; Scaffold003 rebuild exon 3035001 3035311 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.2"; Scaffold003 rebuild exon 3035411 3035433 . - . gene_id "RvY_07512"; transcript_id "RvY_07512.2"; Scaffold003 rebuild transcript 3036767 3038412 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold003 rebuild exon 3036767 3036869 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.1"; Scaffold003 rebuild exon 3036941 3037281 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.1"; Scaffold003 rebuild exon 3037347 3038060 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.1"; Scaffold003 rebuild exon 3038134 3038412 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.1"; Scaffold003 rebuild transcript 3036777 3038412 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold003 rebuild exon 3036777 3036869 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.2"; Scaffold003 rebuild exon 3037347 3038060 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.2"; Scaffold003 rebuild exon 3038134 3038412 . - . gene_id "RvY_07513"; transcript_id "RvY_07513.2"; Scaffold003 rebuild transcript 3039244 3039678 . - . gene_id "RvY_07514"; transcript_id "RvY_07514.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3039244 3039678 . - . gene_id "RvY_07514"; transcript_id "RvY_07514.1"; Scaffold003 rebuild transcript 3040026 3040505 . - . gene_id "RvY_07515"; transcript_id "RvY_07515.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3040026 3040505 . - . gene_id "RvY_07515"; transcript_id "RvY_07515.1"; Scaffold003 rebuild transcript 3041147 3042597 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; gene_name "K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; KO "K01025"; Scaffold003 rebuild exon 3041147 3041268 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; Scaffold003 rebuild exon 3041345 3041457 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; Scaffold003 rebuild exon 3041552 3041793 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; Scaffold003 rebuild exon 3041881 3042102 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; Scaffold003 rebuild exon 3042174 3042357 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; Scaffold003 rebuild exon 3042458 3042597 . + . gene_id "RvY_07516"; transcript_id "RvY_07516.1"; Scaffold003 rebuild transcript 3044656 3047587 . + . gene_id "RvY_07517"; transcript_id "RvY_07517.1"; gene_name "TGFBR1"; annotation "Bone morphogenetic protein receptor type-1A"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[TGF_beta_GS] Transforming growth factor beta type I GS-motif"; EC "EC2.7.11.30"; KO "K04674"; similar_genes "BMR1A_MOUSE(e-value:1.2e-77;bit-score:287.0)"; Scaffold003 rebuild exon 3044656 3045221 . + . gene_id "RvY_07517"; transcript_id "RvY_07517.1"; Scaffold003 rebuild exon 3045287 3045431 . + . gene_id "RvY_07517"; transcript_id "RvY_07517.1"; Scaffold003 rebuild exon 3045547 3045697 . + . gene_id "RvY_07517"; transcript_id "RvY_07517.1"; Scaffold003 rebuild exon 3046511 3046734 . + . gene_id "RvY_07517"; transcript_id "RvY_07517.1"; Scaffold003 rebuild exon 3047081 3047587 . + . gene_id "RvY_07517"; transcript_id "RvY_07517.1"; Scaffold003 rebuild transcript 3047658 3048233 . - . gene_id "RvY_07518"; transcript_id "RvY_07518.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3047658 3047782 . - . gene_id "RvY_07518"; transcript_id "RvY_07518.1"; Scaffold003 rebuild exon 3048095 3048233 . - . gene_id "RvY_07518"; transcript_id "RvY_07518.1"; Scaffold003 rebuild transcript 3049533 3051098 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; gene_name "PRDX5"; annotation "peroxiredoxin 5, atypical 2-Cys peroxiredoxin [EC:1.11.1.15]"; Pfam "[AhpC-TSA] AhpC/TSA family|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs."; EC "EC1.11.1.15"; KO "K11187"; similar_genes "PRDX5_MOUSE(e-value:3.2e-16;bit-score:83.0)"; Scaffold003 rebuild exon 3049533 3049638 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild exon 3050207 3050262 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild exon 3050352 3050430 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild exon 3050529 3050620 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild exon 3050686 3050759 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild exon 3050878 3050938 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild exon 3051087 3051098 . - . gene_id "RvY_07519"; transcript_id "RvY_07519.1"; Scaffold003 rebuild transcript 3051906 3053323 . - . gene_id "RvY_07520"; transcript_id "RvY_07520.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3051906 3052246 . - . gene_id "RvY_07520"; transcript_id "RvY_07520.1"; Scaffold003 rebuild exon 3052343 3052525 . - . gene_id "RvY_07520"; transcript_id "RvY_07520.1"; Scaffold003 rebuild exon 3053101 3053323 . - . gene_id "RvY_07520"; transcript_id "RvY_07520.1"; Scaffold003 rebuild transcript 3057713 3062062 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; gene_name "INHB"; annotation "inhibin, beta"; Pfam "[TGF_beta] Transforming growth factor beta like domain|[TGFb_propeptide] TGF-beta propeptide"; CDD "(2)Transforming growth factor-beta (TGF-beta) family. Family members are Scaffold003 rebuild exon 3057713 3057774 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3058031 3058157 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3058234 3058315 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3058399 3058452 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3058600 3058672 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3059434 3059598 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3060071 3060289 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild exon 3061693 3062062 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.1"; Scaffold003 rebuild transcript 3057713 3062062 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; gene_name "INHB"; annotation "inhibin, beta"; Pfam "[TGF_beta] Transforming growth factor beta like domain|[TGFb_propeptide] TGF-beta propeptide"; CDD "(2)Transforming growth factor-beta (TGF-beta) family. Family members are Scaffold003 rebuild exon 3057713 3057774 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3058031 3058157 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3058234 3058315 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3058399 3058452 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3058600 3058672 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3059434 3059598 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3060071 3060280 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild exon 3061693 3062062 . - . gene_id "RvY_07521"; transcript_id "RvY_07521.2"; Scaffold003 rebuild transcript 3063483 3066844 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat|[RPAP3_C] Potential Monad-binding region of RPAP3"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; similar_genes "RPAP3_RAT(e-value:6.8e-10;bit-score:62.0)"; Scaffold003 rebuild exon 3063483 3063614 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3064252 3064352 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3064520 3064617 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3064716 3064813 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3064946 3065257 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3065377 3065634 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3065729 3065921 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3065979 3066106 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3066192 3066344 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild exon 3066518 3066844 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.1"; Scaffold003 rebuild transcript 3064246 3066844 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat|[RPAP3_C] Potential Monad-binding region of RPAP3"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; similar_genes "RPAP3_RAT(e-value:6.8e-10;bit-score:62.0)"; Scaffold003 rebuild exon 3064246 3064352 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3064520 3064617 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3064716 3064813 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3064946 3065257 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3065377 3065634 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3065729 3065921 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3065979 3066106 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3066192 3066344 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild exon 3066518 3066844 . - . gene_id "RvY_07522"; transcript_id "RvY_07522.2"; Scaffold003 rebuild transcript 3067785 3070851 . + . gene_id "RvY_07523"; transcript_id "RvY_07523.1"; gene_name "TLR3"; annotation "toll-like recepto 3"; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; KO "K05401"; Scaffold003 rebuild exon 3067785 3068310 . + . gene_id "RvY_07523"; transcript_id "RvY_07523.1"; Scaffold003 rebuild exon 3068789 3070851 . + . gene_id "RvY_07523"; transcript_id "RvY_07523.1"; Scaffold003 rebuild transcript 3071337 3072249 . - . gene_id "RvY_07524"; transcript_id "RvY_07524.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 3071337 3071408 . - . gene_id "RvY_07524"; transcript_id "RvY_07524.1"; Scaffold003 rebuild exon 3071812 3072249 . - . gene_id "RvY_07524"; transcript_id "RvY_07524.1"; Scaffold003 rebuild transcript 3072344 3074450 . + . gene_id "RvY_07525"; transcript_id "RvY_07525.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3072344 3072545 . + . gene_id "RvY_07525"; transcript_id "RvY_07525.1"; Scaffold003 rebuild exon 3074281 3074450 . + . gene_id "RvY_07525"; transcript_id "RvY_07525.1"; Scaffold003 rebuild transcript 3073263 3073529 . + . gene_id "RvY_07525"; transcript_id "RvY_07525.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3073263 3073529 . + . gene_id "RvY_07525"; transcript_id "RvY_07525.2"; Scaffold003 rebuild transcript 3074874 3075083 . + . gene_id "RvY_07526"; transcript_id "RvY_07526.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3074874 3075083 . + . gene_id "RvY_07526"; transcript_id "RvY_07526.1"; Scaffold003 rebuild transcript 3078105 3078980 . + . gene_id "RvY_07527"; transcript_id "RvY_07527.1"; gene_name "ARL4A"; annotation "putative ADP-ribosylation factor-like protein 4C"; Pfam "[FeoB_N] Ferrous iron transport protein B|[SRPRB] Signal recognition particle receptor beta subunit|[ATP_bind_1] Conserved hypothetical ATP binding protein|[Miro] Miro-like protein|[Ras] Ras family|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily."; KO "K07945"; similar_genes "ARL4C_HUMAN(e-value:1.2e-26;bit-score:118.0)"; Scaffold003 rebuild exon 3078105 3078494 . + . gene_id "RvY_07527"; transcript_id "RvY_07527.1"; Scaffold003 rebuild exon 3078789 3078980 . + . gene_id "RvY_07527"; transcript_id "RvY_07527.1"; Scaffold003 rebuild transcript 3083846 3084182 . + . gene_id "RvY_07528"; transcript_id "RvY_07528.1"; annotation "hypothetical protein."; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; similar_genes "LYRM5_MOUSE(e-value:1.7e-25;bit-score:114.0)"; Scaffold003 rebuild exon 3083846 3083890 . + . gene_id "RvY_07528"; transcript_id "RvY_07528.1"; Scaffold003 rebuild exon 3083955 3084182 . + . gene_id "RvY_07528"; transcript_id "RvY_07528.1"; Scaffold003 rebuild transcript 3084229 3084582 . + . gene_id "RvY_07529"; transcript_id "RvY_07529.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3084229 3084582 . + . gene_id "RvY_07529"; transcript_id "RvY_07529.1"; Scaffold003 rebuild transcript 3085178 3086547 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; annotation "hypothetical protein."; similar_genes "RM28_BOVIN(e-value:2.1e-13;bit-score:74.0)"; Scaffold003 rebuild exon 3085178 3085238 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild exon 3085333 3085363 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild exon 3085443 3085569 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild exon 3085649 3085792 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild exon 3085856 3085997 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild exon 3086119 3086247 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild exon 3086333 3086547 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.1"; Scaffold003 rebuild transcript 3085329 3086547 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; annotation "hypothetical protein."; similar_genes "RM28_BOVIN(e-value:2.1e-13;bit-score:74.0)"; Scaffold003 rebuild exon 3085329 3085363 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; Scaffold003 rebuild exon 3085443 3085569 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; Scaffold003 rebuild exon 3085649 3085792 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; Scaffold003 rebuild exon 3085856 3085997 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; Scaffold003 rebuild exon 3086119 3086247 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; Scaffold003 rebuild exon 3086333 3086547 . - . gene_id "RvY_07530"; transcript_id "RvY_07530.2"; Scaffold003 rebuild transcript 3087133 3091710 . + . gene_id "RvY_07531"; transcript_id "RvY_07531.1"; gene_name "Vps52"; annotation "putative Vacuolar protein sorting-associated protein 52 homolog"; Pfam "[Vps52] Vps52 / Sac2 family|[Sec3] Exocyst complex component Sec3"; CDD "Vps52 / Sac2 family. Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events."; similar_genes "VPS52_RAT(e-value:7.1e-33;bit-score:138.0)"; Scaffold003 rebuild exon 3087133 3087396 . + . gene_id "RvY_07531"; transcript_id "RvY_07531.1"; Scaffold003 rebuild exon 3087460 3088810 . + . gene_id "RvY_07531"; transcript_id "RvY_07531.1"; Scaffold003 rebuild exon 3089198 3089527 . + . gene_id "RvY_07531"; transcript_id "RvY_07531.1"; Scaffold003 rebuild exon 3089591 3089709 . + . gene_id "RvY_07531"; transcript_id "RvY_07531.1"; Scaffold003 rebuild exon 3091564 3091710 . + . gene_id "RvY_07531"; transcript_id "RvY_07531.1"; Scaffold003 rebuild transcript 3092207 3093582 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; annotation "hypothetical protein."; Pfam "[XendoU] Endoribonuclease XendoU"; Scaffold003 rebuild exon 3092207 3092342 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; Scaffold003 rebuild exon 3092401 3092593 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; Scaffold003 rebuild exon 3092678 3092880 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; Scaffold003 rebuild exon 3092948 3093201 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; Scaffold003 rebuild exon 3093268 3093343 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; Scaffold003 rebuild exon 3093419 3093582 . + . gene_id "RvY_07532"; transcript_id "RvY_07532.1"; Scaffold003 rebuild transcript 3095732 3101351 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; gene_name "PBP1_mGluR"; annotation "hypothetical protein."; Pfam "[Peripla_BP_6] Periplasmic binding protein|[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III."; similar_genes "GRM1_CAEEL(e-value:6.6e-06;bit-score:49.0)"; Scaffold003 rebuild exon 3095732 3096010 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3096361 3096594 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3096819 3096931 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3097006 3097223 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3097492 3097583 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3097966 3097999 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3098066 3098348 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3098629 3098768 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3098973 3099107 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3099199 3099286 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3099431 3099521 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3099713 3100270 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3100512 3100833 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3100973 3101113 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild exon 3101188 3101351 . + . gene_id "RvY_07533"; transcript_id "RvY_07533.1"; Scaffold003 rebuild transcript 3102014 3104191 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "NR6A1_PIG(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 3102014 3102178 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild exon 3102243 3102384 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild exon 3102449 3102628 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild exon 3102722 3103188 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild exon 3103253 3103420 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild exon 3103613 3103817 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild exon 3103881 3104191 . + . gene_id "RvY_07534"; transcript_id "RvY_07534.1"; Scaffold003 rebuild transcript 3105537 3106020 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3105537 3105630 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.1"; Scaffold003 rebuild exon 3105724 3105908 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.1"; Scaffold003 rebuild exon 3106000 3106020 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.1"; Scaffold003 rebuild transcript 3105537 3105920 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3105537 3105630 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.2"; Scaffold003 rebuild exon 3105724 3105920 . + . gene_id "RvY_07535"; transcript_id "RvY_07535.2"; Scaffold003 rebuild transcript 3108254 3109018 . + . gene_id "RvY_07536"; transcript_id "RvY_07536.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3108254 3108363 . + . gene_id "RvY_07536"; transcript_id "RvY_07536.1"; Scaffold003 rebuild exon 3108429 3108501 . + . gene_id "RvY_07536"; transcript_id "RvY_07536.1"; Scaffold003 rebuild exon 3108614 3109018 . + . gene_id "RvY_07536"; transcript_id "RvY_07536.1"; Scaffold003 rebuild transcript 3109510 3110001 . - . gene_id "RvY_07537"; transcript_id "RvY_07537.1"; gene_name "NGF"; annotation "hypothetical protein."; Pfam "[NGF] Nerve growth factor family"; CDD "Nerve growth factor family."; Scaffold003 rebuild exon 3109510 3110001 . - . gene_id "RvY_07537"; transcript_id "RvY_07537.1"; Scaffold003 rebuild transcript 3111915 3114063 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; gene_name "K01183"; annotation "chitinase [EC:3.2.1.14]"; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold003 rebuild exon 3111915 3112102 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3112184 3112505 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3112585 3112890 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3112993 3113113 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3113190 3113305 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3113393 3113631 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3113711 3113887 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild exon 3113991 3114063 . - . gene_id "RvY_07538"; transcript_id "RvY_07538.1"; Scaffold003 rebuild transcript 3116509 3117563 . - . gene_id "RvY_07539"; transcript_id "RvY_07539.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3116509 3116528 . - . gene_id "RvY_07539"; transcript_id "RvY_07539.1"; Scaffold003 rebuild exon 3116800 3117055 . - . gene_id "RvY_07539"; transcript_id "RvY_07539.1"; Scaffold003 rebuild exon 3117402 3117563 . - . gene_id "RvY_07539"; transcript_id "RvY_07539.1"; Scaffold003 rebuild transcript 3117576 3117782 . - . gene_id "RvY_07540"; transcript_id "RvY_07540.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3117576 3117782 . - . gene_id "RvY_07540"; transcript_id "RvY_07540.1"; Scaffold003 rebuild transcript 3119028 3120572 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; gene_name "PlsC"; annotation "hypothetical protein."; Pfam "[Acyltransferase]"; CDD "Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family."; KO "K13511"; similar_genes "TAZ_ERYPA(e-value:1.4e-18;bit-score:91.0)"; Scaffold003 rebuild exon 3119028 3119117 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild exon 3119180 3119257 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild exon 3119382 3119434 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild exon 3119520 3119582 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild exon 3119913 3120164 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild exon 3120246 3120371 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild exon 3120467 3120572 . - . gene_id "RvY_07541"; transcript_id "RvY_07541.1"; Scaffold003 rebuild transcript 3119935 3120234 . + . gene_id "RvY_07542"; transcript_id "RvY_07542.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3119935 3120234 . + . gene_id "RvY_07542"; transcript_id "RvY_07542.1"; Scaffold003 rebuild transcript 3121069 3122756 . + . gene_id "RvY_07543"; transcript_id "RvY_07543.1"; gene_name "EF-TU"; annotation "Elongation factor Tu-B"; Pfam "[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU_D3] Elongation factor Tu C-terminal domain|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "elongation factor Tu; Reviewed"; EC "EC3.6.5.3"; KO "K02358"; similar_genes "EFTU2_THETN(e-value:2.3e-63;bit-score:240.0)"; Scaffold003 rebuild exon 3121069 3121472 . + . gene_id "RvY_07543"; transcript_id "RvY_07543.1"; Scaffold003 rebuild exon 3121539 3121745 . + . gene_id "RvY_07543"; transcript_id "RvY_07543.1"; Scaffold003 rebuild exon 3121812 3122106 . + . gene_id "RvY_07543"; transcript_id "RvY_07543.1"; Scaffold003 rebuild exon 3122265 3122756 . + . gene_id "RvY_07543"; transcript_id "RvY_07543.1"; Scaffold003 rebuild transcript 3123051 3124396 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; gene_name "PcbC"; annotation "hypothetical protein."; Pfam "[DIOX_N] non-haem dioxygenase in morphine synthesis N-terminal|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Isopenicillin N synthase and related dioxygenases [General function prediction only]"; Scaffold003 rebuild exon 3123051 3123185 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; Scaffold003 rebuild exon 3123282 3123409 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; Scaffold003 rebuild exon 3123475 3123538 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; Scaffold003 rebuild exon 3123617 3123789 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; Scaffold003 rebuild exon 3123891 3124134 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; Scaffold003 rebuild exon 3124190 3124396 . + . gene_id "RvY_07544"; transcript_id "RvY_07544.1"; Scaffold003 rebuild transcript 3130121 3134819 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; gene_name "BCAR1"; annotation "breast cancer anti-estrogen resistance 1"; Pfam "[Serine_rich] Serine rich protein interaction domain|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; KO "K05726"; Scaffold003 rebuild exon 3130121 3130213 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; Scaffold003 rebuild exon 3131681 3131872 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; Scaffold003 rebuild exon 3132463 3132532 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; Scaffold003 rebuild exon 3132693 3133075 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; Scaffold003 rebuild exon 3133314 3133950 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; Scaffold003 rebuild exon 3134146 3134819 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.1"; Scaffold003 rebuild transcript 3124923 3134819 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; gene_name "BCAR1"; annotation "breast cancer anti-estrogen resistance 1"; Pfam "[Serine_rich] Serine rich protein interaction domain|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; KO "K05726"; Scaffold003 rebuild exon 3124923 3124925 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; Scaffold003 rebuild exon 3131681 3131872 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; Scaffold003 rebuild exon 3132463 3132532 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; Scaffold003 rebuild exon 3132693 3133075 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; Scaffold003 rebuild exon 3133314 3133950 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; Scaffold003 rebuild exon 3134146 3134819 . + . gene_id "RvY_07545"; transcript_id "RvY_07545.2"; Scaffold003 rebuild transcript 3135512 3136945 . - . gene_id "RvY_07546"; transcript_id "RvY_07546.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 3135512 3135589 . - . gene_id "RvY_07546"; transcript_id "RvY_07546.1"; Scaffold003 rebuild exon 3135660 3136039 . - . gene_id "RvY_07546"; transcript_id "RvY_07546.1"; Scaffold003 rebuild exon 3136273 3136945 . - . gene_id "RvY_07546"; transcript_id "RvY_07546.1"; Scaffold003 rebuild transcript 3139599 3141436 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 3139599 3139770 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild exon 3139854 3140123 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild exon 3140189 3140239 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild exon 3140445 3140652 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild exon 3140726 3140946 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild exon 3141020 3141142 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild exon 3141330 3141436 . + . gene_id "RvY_07547"; transcript_id "RvY_07547.1"; Scaffold003 rebuild transcript 3141448 3144124 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; gene_name "(1)PBP1_NPR_like(2)K01768"; annotation "(1)hypothetical protein.(2)Atrial natriuretic peptide receptor 1"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(2)[HNOBA] Heme NO binding associated|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1)EC4.6.1.2(2)EC4.6.1.1|EC4.6.1.2"; KO "(2)K01768"; similar_genes "(1)GCY_STRPU(e-value:1.1e-14;bit-score:78.0)(2)ANPRA_HUMAN(e-value:3.1e-84;bit-score:309.0)"; Scaffold003 rebuild exon 3141448 3141553 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3141618 3141948 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3142311 3142389 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3142585 3142991 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3143138 3143339 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3143417 3143582 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3143661 3143796 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild exon 3143884 3144124 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.1"; Scaffold003 rebuild transcript 3143052 3145437 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; gene_name "(1)PBP1_NPR_like(2)K01768"; annotation "(1)hypothetical protein.(2)Atrial natriuretic peptide receptor 1"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(2)[HNOBA] Heme NO binding associated|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase.(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1)EC4.6.1.2(2)EC4.6.1.1|EC4.6.1.2"; KO "(2)K01768"; similar_genes "(1)GCY_STRPU(e-value:1.1e-14;bit-score:78.0)(2)ANPRA_HUMAN(e-value:3.1e-84;bit-score:309.0)"; Scaffold003 rebuild exon 3143052 3143339 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3143417 3143582 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3143661 3143796 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3143884 3143960 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3144038 3144203 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3144266 3144418 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3144492 3144570 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3144641 3144710 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3144781 3144851 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3144910 3145106 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild exon 3145191 3145437 . + . gene_id "RvY_07548"; transcript_id "RvY_07548.2"; Scaffold003 rebuild transcript 3152432 3157791 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; gene_name "CYCc"; annotation "Atrial natriuretic peptide receptor 1"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRA_MOUSE(e-value:1.4e-69;bit-score:260.0)"; Scaffold003 rebuild exon 3152432 3152585 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3153360 3153650 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3153742 3153830 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3153896 3154052 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3154220 3154680 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3155933 3156311 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3156378 3156546 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3156704 3156856 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3156928 3157120 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3157195 3157369 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3157451 3157499 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild exon 3157596 3157791 . + . gene_id "RvY_07549"; transcript_id "RvY_07549.1"; Scaffold003 rebuild transcript 3158349 3158579 . - . gene_id "RvY_07550"; transcript_id "RvY_07550.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3158349 3158579 . - . gene_id "RvY_07550"; transcript_id "RvY_07550.1"; Scaffold003 rebuild transcript 3159706 3160851 . - . gene_id "RvY_07551"; transcript_id "RvY_07551.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold003 rebuild exon 3159706 3160851 . - . gene_id "RvY_07551"; transcript_id "RvY_07551.1"; Scaffold003 rebuild transcript 3161087 3164388 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; product "GNAS (guanine nucleotide binding protein, alpha stimulating)"; gene_name "G-alpha"; annotation "GNAS (guanine nucleotide binding protein, alpha stimulating) | hypothetical protein."; Pfam "[G-alpha] G-protein alpha subunit|[Arf] ADP-ribosylation factor family"; CDD "G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute."; similar_genes "GNAS_HOMAM(e-value:1.7e-25;bit-score:114.0)"; Scaffold003 rebuild exon 3161087 3161227 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3161305 3161372 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3161434 3161564 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3161681 3161863 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3162084 3162157 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3162230 3162284 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3163210 3163319 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3163392 3163589 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3163968 3164022 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3164127 3164199 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild exon 3164283 3164388 . - . gene_id "RvY_07552"; transcript_id "RvY_07552.1"; Scaffold003 rebuild transcript 3166573 3168666 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; gene_name "(1)2a57(2)Nucleoside_tran"; annotation "hypothetical protein."; Pfam "[Nucleoside_tran] Nucleoside transporter"; CDD "(1)Equilibrative Nucleoside Transporter (ENT).(2)Nucleoside transporter. This is a family of nucleoside transporters. In mammalian cells nucleoside transporters transport nucleoside across the plasma membrane and are essential for nucleotide synthesis via the salvage pathways for cells that lack their own de novo synthesis pathways. Also in this family is mouse and human nucleolar protein HNP36, a protein of unknown function; although it has been hypothesized to be a plasma membrane nucleoside transporter."; KO "K15014"; Scaffold003 rebuild exon 3166573 3166573 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3166639 3166738 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3166819 3166923 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3166991 3167097 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3167160 3167370 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3167443 3167493 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3167568 3167662 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3167732 3167880 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3168000 3168081 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3168310 3168448 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild exon 3168537 3168666 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.1"; Scaffold003 rebuild transcript 3165785 3167172 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; gene_name "(1)2a57(2)Nucleoside_tran"; annotation "hypothetical protein."; Pfam "[Nucleoside_tran] Nucleoside transporter"; CDD "(1)Equilibrative Nucleoside Transporter (ENT).(2)Nucleoside transporter. This is a family of nucleoside transporters. In mammalian cells nucleoside transporters transport nucleoside across the plasma membrane and are essential for nucleotide synthesis via the salvage pathways for cells that lack their own de novo synthesis pathways. Also in this family is mouse and human nucleolar protein HNP36, a protein of unknown function; although it has been hypothesized to be a plasma membrane nucleoside transporter."; KO "K15014"; Scaffold003 rebuild exon 3165785 3166019 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild exon 3166198 3166400 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild exon 3166488 3166573 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild exon 3166639 3166738 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild exon 3166819 3166923 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild exon 3166991 3167097 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild exon 3167160 3167172 . - . gene_id "RvY_07553"; transcript_id "RvY_07553.2"; Scaffold003 rebuild transcript 3170096 3171456 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.1"; annotation "hypothetical protein."; Pfam "[CAP_GLY] CAP-Gly domain"; Scaffold003 rebuild exon 3170096 3170356 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.1"; Scaffold003 rebuild exon 3170434 3170793 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.1"; Scaffold003 rebuild exon 3170865 3171336 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.1"; Scaffold003 rebuild exon 3171416 3171456 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.1"; Scaffold003 rebuild transcript 3170322 3171456 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.2"; annotation "hypothetical protein."; Pfam "[CAP_GLY] CAP-Gly domain"; Scaffold003 rebuild exon 3170322 3170360 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.2"; Scaffold003 rebuild exon 3170434 3170793 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.2"; Scaffold003 rebuild exon 3170865 3171336 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.2"; Scaffold003 rebuild exon 3171416 3171456 . + . gene_id "RvY_07554"; transcript_id "RvY_07554.2"; Scaffold003 rebuild transcript 3170102 3170323 . - . gene_id "RvY_07555"; transcript_id "RvY_07555.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3170102 3170323 . - . gene_id "RvY_07555"; transcript_id "RvY_07555.1"; Scaffold003 rebuild transcript 3173331 3174630 . - . gene_id "RvY_07556"; transcript_id "RvY_07556.1"; gene_name "CBX8"; annotation "chromobox protein 8"; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; KO "K11455"; similar_genes "CBX7_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 3173331 3174064 . - . gene_id "RvY_07556"; transcript_id "RvY_07556.1"; Scaffold003 rebuild exon 3174531 3174630 . - . gene_id "RvY_07556"; transcript_id "RvY_07556.1"; Scaffold003 rebuild transcript 3176841 3181217 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; gene_name "GRIN"; annotation "glutamate receptor, ionotropic, invertebrate"; Pfam "[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05313"; similar_genes "GRIK2_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold003 rebuild exon 3176841 3176961 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3177020 3177196 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3177275 3177347 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3177421 3177644 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3177723 3177901 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3177969 3178028 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3178130 3178285 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3178359 3178667 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3178766 3178867 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3178978 3179166 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3179295 3179752 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3179822 3180052 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3180114 3180325 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3180433 3180565 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3180660 3180764 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild exon 3180857 3181217 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.1"; Scaffold003 rebuild transcript 3177050 3181217 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; gene_name "GRIN"; annotation "glutamate receptor, ionotropic, invertebrate"; Pfam "[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05313"; similar_genes "GRIK2_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold003 rebuild exon 3177050 3177196 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3177275 3177644 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3177723 3177901 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3177969 3178028 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3178130 3178285 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3178359 3178667 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3178766 3178867 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3178978 3179166 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3179295 3179752 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3179822 3180052 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3180114 3180325 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3180433 3180565 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3180660 3180764 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild exon 3180857 3181217 . + . gene_id "RvY_07557"; transcript_id "RvY_07557.2"; Scaffold003 rebuild transcript 3181471 3182526 . - . gene_id "RvY_07558"; transcript_id "RvY_07558.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 3181471 3182526 . - . gene_id "RvY_07558"; transcript_id "RvY_07558.1"; Scaffold003 rebuild transcript 3183614 3191465 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; annotation "putative Proteasome activator complex subunit 4"; Pfam "[DUF3437]"; similar_genes "PSME4_XENLA(e-value:2.3e-29;bit-score:127.0)"; Scaffold003 rebuild exon 3183614 3184330 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3185192 3185614 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3185842 3186344 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3186401 3186703 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3186866 3187615 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3187841 3188140 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3188203 3188597 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3188736 3188975 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3189037 3189366 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3189621 3190048 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3190211 3190804 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild exon 3190863 3191465 . - . gene_id "RvY_07559"; transcript_id "RvY_07559.1"; Scaffold003 rebuild transcript 3191971 3193604 . + . gene_id "RvY_07560"; transcript_id "RvY_07560.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold003 rebuild exon 3191971 3192319 . + . gene_id "RvY_07560"; transcript_id "RvY_07560.1"; Scaffold003 rebuild exon 3192380 3193333 . + . gene_id "RvY_07560"; transcript_id "RvY_07560.1"; Scaffold003 rebuild exon 3193417 3193604 . + . gene_id "RvY_07560"; transcript_id "RvY_07560.1"; Scaffold003 rebuild transcript 3194429 3199654 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; gene_name "GLG1"; annotation "golgi apparatus protein 1"; Pfam "[Cys_rich_FGFR] Cysteine rich repeat"; KO "K06816"; similar_genes "GSLG1_MOUSE(e-value:1.9e-16;bit-score:84.0)"; Scaffold003 rebuild exon 3194429 3194516 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3194777 3195006 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3195098 3195639 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3195698 3195818 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3195893 3196076 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3196220 3196586 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3196773 3197052 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3197110 3197250 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3197312 3197572 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3197641 3197732 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3197968 3198082 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3198145 3198720 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3198992 3199151 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3199224 3199423 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild exon 3199487 3199654 . + . gene_id "RvY_07561"; transcript_id "RvY_07561.1"; Scaffold003 rebuild transcript 3200203 3203220 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; gene_name "HSF1"; annotation "heat shock transcription factor 1"; Pfam "[HSF_DNA-bind] HSF-type DNA-binding"; KO "K09414"; similar_genes "HSF4_CANFA(e-value:8.4e-19;bit-score:92.0)"; Scaffold003 rebuild exon 3200203 3200525 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3200706 3200766 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3200849 3201011 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3201078 3201615 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3201936 3202056 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3202141 3202284 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3202347 3202622 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3202704 3202828 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3202908 3203016 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild exon 3203116 3203220 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.1"; Scaffold003 rebuild transcript 3200203 3203220 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; gene_name "HSF1"; annotation "heat shock transcription factor 1"; Pfam "[HSF_DNA-bind] HSF-type DNA-binding"; KO "K09414"; similar_genes "HSF4_CANFA(e-value:8.4e-19;bit-score:92.0)"; Scaffold003 rebuild exon 3200203 3200525 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3200706 3200766 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3200849 3201011 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3201078 3201387 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3201538 3201615 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3201936 3202056 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3202141 3202284 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3202347 3202622 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3202704 3202828 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3202908 3203016 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild exon 3203116 3203220 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.2"; Scaffold003 rebuild transcript 3200837 3203220 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; gene_name "HSF1"; annotation "heat shock transcription factor 1"; Pfam "[HSF_DNA-bind] HSF-type DNA-binding"; KO "K09414"; similar_genes "HSF4_CANFA(e-value:8.4e-19;bit-score:92.0)"; Scaffold003 rebuild exon 3200837 3201011 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3201078 3201387 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3201538 3201615 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3201936 3202056 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3202141 3202284 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3202347 3202622 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3202704 3202828 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3202908 3203016 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild exon 3203116 3203220 . - . gene_id "RvY_07562"; transcript_id "RvY_07562.3"; Scaffold003 rebuild transcript 3204283 3205099 . - . gene_id "RvY_07563"; transcript_id "RvY_07563.1"; gene_name "(1)IQGAP"; annotation "(1)IQ motif containing GTPase activating protein(2)hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; CDD "(1)Calponin [Cytoskeleton]"; KO "(1)K05767"; Scaffold003 rebuild exon 3204283 3204687 . - . gene_id "RvY_07563"; transcript_id "RvY_07563.1"; Scaffold003 rebuild exon 3205058 3205099 . - . gene_id "RvY_07563"; transcript_id "RvY_07563.1"; Scaffold003 rebuild transcript 3204126 3204416 . - . gene_id "RvY_07563"; transcript_id "RvY_07563.2"; gene_name "(1)IQGAP"; annotation "(1)IQ motif containing GTPase activating protein(2)hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; CDD "(1)Calponin [Cytoskeleton]"; KO "(1)K05767"; Scaffold003 rebuild exon 3204126 3204416 . - . gene_id "RvY_07563"; transcript_id "RvY_07563.2"; Scaffold003 rebuild transcript 3205763 3208711 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; gene_name "TPH"; annotation "Tryptophan 5-hydroxylase 1"; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria."; EC "EC1.14.16.4"; KO "K00502"; similar_genes "TPH1_CHICK(e-value:7.0e-152;bit-score:534.0)"; Scaffold003 rebuild exon 3205763 3205973 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3206040 3206173 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3206237 3206419 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3206522 3206561 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3206711 3206776 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3206853 3206969 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3207085 3207183 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3207245 3207295 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3207395 3207462 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3207815 3207915 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3207980 3208187 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3208258 3208386 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild exon 3208607 3208711 . - . gene_id "RvY_07564"; transcript_id "RvY_07564.1"; Scaffold003 rebuild transcript 3209440 3210188 . - . gene_id "RvY_07565"; transcript_id "RvY_07565.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3209440 3209698 . - . gene_id "RvY_07565"; transcript_id "RvY_07565.1"; Scaffold003 rebuild exon 3209779 3209873 . - . gene_id "RvY_07565"; transcript_id "RvY_07565.1"; Scaffold003 rebuild exon 3209941 3210053 . - . gene_id "RvY_07565"; transcript_id "RvY_07565.1"; Scaffold003 rebuild exon 3210131 3210188 . - . gene_id "RvY_07565"; transcript_id "RvY_07565.1"; Scaffold003 rebuild transcript 3210929 3211447 . - . gene_id "RvY_07566"; transcript_id "RvY_07566.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3210929 3211447 . - . gene_id "RvY_07566"; transcript_id "RvY_07566.1"; Scaffold003 rebuild transcript 3210929 3211447 . - . gene_id "RvY_07566"; transcript_id "RvY_07566.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3210929 3211314 . - . gene_id "RvY_07566"; transcript_id "RvY_07566.2"; Scaffold003 rebuild exon 3211390 3211447 . - . gene_id "RvY_07566"; transcript_id "RvY_07566.2"; Scaffold003 rebuild transcript 3212223 3213462 . - . gene_id "RvY_07567"; transcript_id "RvY_07567.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3212223 3212689 . - . gene_id "RvY_07567"; transcript_id "RvY_07567.1"; Scaffold003 rebuild exon 3212800 3213123 . - . gene_id "RvY_07567"; transcript_id "RvY_07567.1"; Scaffold003 rebuild exon 3213195 3213462 . - . gene_id "RvY_07567"; transcript_id "RvY_07567.1"; Scaffold003 rebuild transcript 3213906 3214100 . - . gene_id "RvY_07568"; transcript_id "RvY_07568.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3213906 3214100 . - . gene_id "RvY_07568"; transcript_id "RvY_07568.1"; Scaffold003 rebuild transcript 3214469 3216186 . + . gene_id "RvY_07569"; transcript_id "RvY_07569.1"; gene_name "GNAI"; annotation "Guanine nucleotide-binding protein G(i) subunit alpha"; Pfam "[G-alpha] G-protein alpha subunit|[Arf] ADP-ribosylation factor family"; CDD "G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute."; KO "K04630"; similar_genes "GNAI_ASTPE(e-value:1.2e-119;bit-score:427.0)"; Scaffold003 rebuild exon 3214469 3214834 . + . gene_id "RvY_07569"; transcript_id "RvY_07569.1"; Scaffold003 rebuild exon 3215226 3215629 . + . gene_id "RvY_07569"; transcript_id "RvY_07569.1"; Scaffold003 rebuild exon 3215694 3215736 . + . gene_id "RvY_07569"; transcript_id "RvY_07569.1"; Scaffold003 rebuild exon 3215938 3216186 . + . gene_id "RvY_07569"; transcript_id "RvY_07569.1"; Scaffold003 rebuild transcript 3217495 3219370 . + . gene_id "RvY_07570"; transcript_id "RvY_07570.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3217495 3218374 . + . gene_id "RvY_07570"; transcript_id "RvY_07570.1"; Scaffold003 rebuild exon 3218862 3219370 . + . gene_id "RvY_07570"; transcript_id "RvY_07570.1"; Scaffold003 rebuild transcript 3219918 3224200 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; annotation "hypothetical protein."; similar_genes "KRA62_MOUSE(e-value:5.5e-18;bit-score:89.0)"; Scaffold003 rebuild exon 3219918 3220456 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild exon 3220762 3221193 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild exon 3221350 3222003 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild exon 3222182 3222538 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild exon 3222747 3222893 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild exon 3223168 3223606 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild exon 3224078 3224200 . - . gene_id "RvY_07571"; transcript_id "RvY_07571.1"; Scaffold003 rebuild transcript 3225577 3226352 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3225577 3225787 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.1"; Scaffold003 rebuild exon 3226080 3226166 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.1"; Scaffold003 rebuild exon 3226255 3226352 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.1"; Scaffold003 rebuild transcript 3225577 3225900 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3225577 3225900 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.2"; Scaffold003 rebuild transcript 3224853 3226352 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3224853 3224900 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.3"; Scaffold003 rebuild exon 3225739 3225787 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.3"; Scaffold003 rebuild exon 3226080 3226218 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.3"; Scaffold003 rebuild exon 3226295 3226352 . + . gene_id "RvY_07572"; transcript_id "RvY_07572.3"; Scaffold003 rebuild transcript 3227982 3235204 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; annotation "Glutamate receptor, ionotropic kainate 2"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; similar_genes "GRIK2_MOUSE(e-value:4.8e-51;bit-score:199.0)"; Scaffold003 rebuild exon 3227982 3228117 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3229952 3230113 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3231505 3231932 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3231996 3232049 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3232145 3232327 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3232390 3232776 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3232948 3233169 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3233248 3233362 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3233582 3234027 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3234282 3234507 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3234568 3234714 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3234781 3234896 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild exon 3234959 3235204 . + . gene_id "RvY_07573"; transcript_id "RvY_07573.1"; Scaffold003 rebuild transcript 3237213 3238382 . + . gene_id "RvY_07574"; transcript_id "RvY_07574.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3237213 3238382 . + . gene_id "RvY_07574"; transcript_id "RvY_07574.1"; Scaffold003 rebuild transcript 3238547 3243367 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; annotation "hypothetical protein."; Pfam "[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|[Endonuclease_NS] DNA/RNA non-specific endonuclease"; EC "EC3.1.4.1"; similar_genes "ENPP3_HUMAN(e-value:3.2e-18;bit-score:90.0)"; Scaffold003 rebuild exon 3238547 3238565 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3238660 3238811 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3238884 3239052 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3239120 3239315 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3239372 3239513 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3239606 3239821 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3240014 3240574 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3240639 3241049 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3241120 3241191 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3242446 3242737 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild exon 3243108 3243367 . - . gene_id "RvY_07575"; transcript_id "RvY_07575.1"; Scaffold003 rebuild transcript 3244356 3245367 . + . gene_id "RvY_07576"; transcript_id "RvY_07576.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3244356 3244458 . + . gene_id "RvY_07576"; transcript_id "RvY_07576.1"; Scaffold003 rebuild exon 3244532 3245367 . + . gene_id "RvY_07576"; transcript_id "RvY_07576.1"; Scaffold003 rebuild transcript 3246733 3247511 . + . gene_id "RvY_07577"; transcript_id "RvY_07577.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3246733 3246875 . + . gene_id "RvY_07577"; transcript_id "RvY_07577.1"; Scaffold003 rebuild exon 3247029 3247149 . + . gene_id "RvY_07577"; transcript_id "RvY_07577.1"; Scaffold003 rebuild exon 3247239 3247511 . + . gene_id "RvY_07577"; transcript_id "RvY_07577.1"; Scaffold003 rebuild transcript 3247531 3247920 . + . gene_id "RvY_07578"; transcript_id "RvY_07578.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3247531 3247920 . + . gene_id "RvY_07578"; transcript_id "RvY_07578.1"; Scaffold003 rebuild transcript 3248153 3248792 . - . gene_id "RvY_07579"; transcript_id "RvY_07579.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3248153 3248245 . - . gene_id "RvY_07579"; transcript_id "RvY_07579.1"; Scaffold003 rebuild exon 3248314 3248427 . - . gene_id "RvY_07579"; transcript_id "RvY_07579.1"; Scaffold003 rebuild exon 3248547 3248792 . - . gene_id "RvY_07579"; transcript_id "RvY_07579.1"; Scaffold003 rebuild transcript 3248511 3248792 . - . gene_id "RvY_07579"; transcript_id "RvY_07579.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3248511 3248792 . - . gene_id "RvY_07579"; transcript_id "RvY_07579.2"; Scaffold003 rebuild transcript 3249516 3249866 . - . gene_id "RvY_07580"; transcript_id "RvY_07580.1"; gene_name "TFIID10"; annotation "transcription initiation factor TFIID subunit D10"; Pfam "[TFIID_20kDa] Transcription initiation factor TFIID subunit A"; CDD "Transcription initiation factor TFIID subunit A."; KO "K03126"; similar_genes "TAF12_XENLA(e-value:1.2e-11;bit-score:68.0)"; Scaffold003 rebuild exon 3249516 3249866 . - . gene_id "RvY_07580"; transcript_id "RvY_07580.1"; Scaffold003 rebuild transcript 3250383 3251397 . + . gene_id "RvY_07581"; transcript_id "RvY_07581.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3250383 3250557 . + . gene_id "RvY_07581"; transcript_id "RvY_07581.1"; Scaffold003 rebuild exon 3251216 3251397 . + . gene_id "RvY_07581"; transcript_id "RvY_07581.1"; Scaffold003 rebuild transcript 3251438 3251716 . + . gene_id "RvY_07582"; transcript_id "RvY_07582.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3251438 3251716 . + . gene_id "RvY_07582"; transcript_id "RvY_07582.1"; Scaffold003 rebuild transcript 3252018 3252520 . + . gene_id "RvY_07583"; transcript_id "RvY_07583.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3252018 3252187 . + . gene_id "RvY_07583"; transcript_id "RvY_07583.1"; Scaffold003 rebuild exon 3252400 3252520 . + . gene_id "RvY_07583"; transcript_id "RvY_07583.1"; Scaffold003 rebuild transcript 3252647 3254974 . + . gene_id "RvY_07584"; transcript_id "RvY_07584.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3252647 3253315 . + . gene_id "RvY_07584"; transcript_id "RvY_07584.1"; Scaffold003 rebuild exon 3253500 3253874 . + . gene_id "RvY_07584"; transcript_id "RvY_07584.1"; Scaffold003 rebuild exon 3254038 3254445 . + . gene_id "RvY_07584"; transcript_id "RvY_07584.1"; Scaffold003 rebuild exon 3254588 3254974 . + . gene_id "RvY_07584"; transcript_id "RvY_07584.1"; Scaffold003 rebuild transcript 3255331 3255600 . + . gene_id "RvY_07585"; transcript_id "RvY_07585.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3255331 3255600 . + . gene_id "RvY_07585"; transcript_id "RvY_07585.1"; Scaffold003 rebuild transcript 3255760 3256110 . - . gene_id "RvY_07586"; transcript_id "RvY_07586.1"; gene_name "TFIID10"; annotation "transcription initiation factor TFIID subunit D10"; Pfam "[TFIID_20kDa] Transcription initiation factor TFIID subunit A"; CDD "Transcription initiation factor TFIID subunit A."; KO "K03126"; similar_genes "TAF12_XENLA(e-value:1.2e-11;bit-score:68.0)"; Scaffold003 rebuild exon 3255760 3256110 . - . gene_id "RvY_07586"; transcript_id "RvY_07586.1"; Scaffold003 rebuild transcript 3256514 3256747 . + . gene_id "RvY_07587"; transcript_id "RvY_07587.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3256514 3256747 . + . gene_id "RvY_07587"; transcript_id "RvY_07587.1"; Scaffold003 rebuild transcript 3257717 3257953 . - . gene_id "RvY_07588"; transcript_id "RvY_07588.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 3257717 3257953 . - . gene_id "RvY_07588"; transcript_id "RvY_07588.1"; Scaffold003 rebuild transcript 3258843 3259043 . + . gene_id "RvY_07589"; transcript_id "RvY_07589.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3258843 3259043 . + . gene_id "RvY_07589"; transcript_id "RvY_07589.1"; Scaffold003 rebuild transcript 3259270 3260832 . + . gene_id "RvY_07590"; transcript_id "RvY_07590.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3259270 3259401 . + . gene_id "RvY_07590"; transcript_id "RvY_07590.1"; Scaffold003 rebuild exon 3260053 3260517 . + . gene_id "RvY_07590"; transcript_id "RvY_07590.1"; Scaffold003 rebuild exon 3260611 3260832 . + . gene_id "RvY_07590"; transcript_id "RvY_07590.1"; Scaffold003 rebuild transcript 3260993 3261325 . + . gene_id "RvY_07591"; transcript_id "RvY_07591.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold003 rebuild exon 3260993 3261325 . + . gene_id "RvY_07591"; transcript_id "RvY_07591.1"; Scaffold003 rebuild transcript 3261760 3263727 . + . gene_id "RvY_07592"; transcript_id "RvY_07592.1"; annotation "hypothetical protein."; Pfam "[YEATS] YEATS family"; KO "K15187"; similar_genes "ENL_HUMAN(e-value:1.0e-08;bit-score:58.0)"; Scaffold003 rebuild exon 3261760 3261832 . + . gene_id "RvY_07592"; transcript_id "RvY_07592.1"; Scaffold003 rebuild exon 3261933 3262307 . + . gene_id "RvY_07592"; transcript_id "RvY_07592.1"; Scaffold003 rebuild exon 3262482 3263051 . + . gene_id "RvY_07592"; transcript_id "RvY_07592.1"; Scaffold003 rebuild exon 3263117 3263727 . + . gene_id "RvY_07592"; transcript_id "RvY_07592.1"; Scaffold003 rebuild transcript 3265201 3266020 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.1"; gene_name "(1)NR_LBD_Tlx_PNR_like"; annotation "hypothetical protein."; CDD "(1)The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; Scaffold003 rebuild exon 3265201 3265353 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.1"; Scaffold003 rebuild exon 3265468 3265687 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.1"; Scaffold003 rebuild exon 3265755 3266020 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.1"; Scaffold003 rebuild transcript 3265201 3265794 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.2"; gene_name "(1)NR_LBD_Tlx_PNR_like"; annotation "hypothetical protein."; CDD "(1)The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; Scaffold003 rebuild exon 3265201 3265353 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.2"; Scaffold003 rebuild exon 3265468 3265794 . + . gene_id "RvY_07593"; transcript_id "RvY_07593.2"; Scaffold003 rebuild transcript 3267350 3269973 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold003 rebuild exon 3267350 3267391 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3267475 3267584 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3267662 3267805 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3267872 3267993 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3268074 3268241 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3268303 3268460 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3268536 3268654 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3268864 3269456 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3269525 3269574 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3269703 3269821 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild exon 3269907 3269973 . - . gene_id "RvY_07594"; transcript_id "RvY_07594.1"; Scaffold003 rebuild transcript 3270593 3278910 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; gene_name "CHD4"; annotation "Chromodomain-helicase-DNA-binding protein Mi-2 homolog"; Pfam "[HDA2-3] Class II histone deacetylase complex subunits 2 and 3|[DUF1087] Domain of Unknown Function (DUF1087)|[DUF1086] Domain of Unknown Function (DUF1086)|[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[Chromo] Chromo (CHRromatin Organisation MOdifier) domain|[CHDNT] CHDNT (NUC034) domain|[ResIII] Type III restriction enzyme, res subunit|[PHD] PHD-finger|[CHDCT2] CHDCT2 (NUC038) domain"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K11643"; similar_genes "CHDM_DROME(e-value:1.8e-169;bit-score:592.0)"; Scaffold003 rebuild exon 3270593 3270846 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3271126 3271449 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3271709 3272321 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3272764 3273320 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3273481 3273909 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3274139 3274483 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3274543 3274881 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3275070 3275418 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3275482 3275936 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3276195 3276540 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3276637 3277274 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3277462 3277932 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3277991 3278597 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild exon 3278683 3278910 . - . gene_id "RvY_07595"; transcript_id "RvY_07595.1"; Scaffold003 rebuild transcript 3280415 3282234 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; annotation "hypothetical protein."; Pfam "[RAI1] RAI1 like PD-(D/E)XK nuclease"; KO "K14845"; similar_genes "DOM3Z_ARATH(e-value:1.2e-07;bit-score:55.0)"; Scaffold003 rebuild exon 3280415 3280541 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild exon 3280619 3280713 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild exon 3280781 3280919 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild exon 3281002 3281253 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild exon 3281363 3281450 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild exon 3281625 3281740 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild exon 3281858 3282234 . - . gene_id "RvY_07596"; transcript_id "RvY_07596.1"; Scaffold003 rebuild transcript 3282724 3283159 . + . gene_id "RvY_07597"; transcript_id "RvY_07597.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3282724 3282841 . + . gene_id "RvY_07597"; transcript_id "RvY_07597.1"; Scaffold003 rebuild exon 3283029 3283159 . + . gene_id "RvY_07597"; transcript_id "RvY_07597.1"; Scaffold003 rebuild transcript 3283269 3283610 . + . gene_id "RvY_07598"; transcript_id "RvY_07598.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3283269 3283610 . + . gene_id "RvY_07598"; transcript_id "RvY_07598.1"; Scaffold003 rebuild transcript 3285678 3285833 . - . gene_id "RvY_07599"; transcript_id "RvY_07599.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3285678 3285833 . - . gene_id "RvY_07599"; transcript_id "RvY_07599.1"; Scaffold003 rebuild transcript 3286012 3286685 . - . gene_id "RvY_07600"; transcript_id "RvY_07600.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3286012 3286335 . - . gene_id "RvY_07600"; transcript_id "RvY_07600.1"; Scaffold003 rebuild exon 3286566 3286685 . - . gene_id "RvY_07600"; transcript_id "RvY_07600.1"; Scaffold003 rebuild transcript 3287321 3288818 . - . gene_id "RvY_07601"; transcript_id "RvY_07601.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_L7Ae] Ribosomal protein L7Ae/L30e/S12e/Gadd45 family"; Scaffold003 rebuild exon 3287321 3287982 . - . gene_id "RvY_07601"; transcript_id "RvY_07601.1"; Scaffold003 rebuild exon 3288041 3288478 . - . gene_id "RvY_07601"; transcript_id "RvY_07601.1"; Scaffold003 rebuild exon 3288560 3288818 . - . gene_id "RvY_07601"; transcript_id "RvY_07601.1"; Scaffold003 rebuild transcript 3289451 3291771 . + . gene_id "RvY_07602"; transcript_id "RvY_07602.1"; gene_name "TOP3"; annotation "DNA topoisomerase 3-alpha"; Pfam "[Topoisom_bac] DNA topoisomerase|[Toprim]"; CDD "Topoisomerase IA [DNA replication, recombination, and repair]"; EC "EC5.99.1.2"; KO "K03165"; similar_genes "TOP3A_HUMAN(e-value:5.0e-74;bit-score:275.0)"; Scaffold003 rebuild exon 3289451 3290131 . + . gene_id "RvY_07602"; transcript_id "RvY_07602.1"; Scaffold003 rebuild exon 3290359 3290872 . + . gene_id "RvY_07602"; transcript_id "RvY_07602.1"; Scaffold003 rebuild exon 3290942 3291187 . + . gene_id "RvY_07602"; transcript_id "RvY_07602.1"; Scaffold003 rebuild exon 3291389 3291771 . + . gene_id "RvY_07602"; transcript_id "RvY_07602.1"; Scaffold003 rebuild transcript 3292170 3293476 . - . gene_id "RvY_07603"; transcript_id "RvY_07603.1"; annotation "hypothetical protein."; Pfam "[IF4E] Eukaryotic initiation factor 4E"; Scaffold003 rebuild exon 3292170 3292211 . - . gene_id "RvY_07603"; transcript_id "RvY_07603.1"; Scaffold003 rebuild exon 3292270 3292467 . - . gene_id "RvY_07603"; transcript_id "RvY_07603.1"; Scaffold003 rebuild exon 3292571 3292760 . - . gene_id "RvY_07603"; transcript_id "RvY_07603.1"; Scaffold003 rebuild exon 3292848 3293320 . - . gene_id "RvY_07603"; transcript_id "RvY_07603.1"; Scaffold003 rebuild exon 3293396 3293476 . - . gene_id "RvY_07603"; transcript_id "RvY_07603.1"; Scaffold003 rebuild transcript 3294368 3296705 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.1"; gene_name "(1)SLC14A"; annotation "(1)solute carrier family 14 (urea transporter)(2)hypothetical protein."; Pfam "[UT] Urea transporter"; KO "(1)K08716"; Scaffold003 rebuild exon 3294368 3295280 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.1"; Scaffold003 rebuild exon 3295353 3295726 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.1"; Scaffold003 rebuild exon 3295911 3296193 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.1"; Scaffold003 rebuild exon 3296260 3296514 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.1"; Scaffold003 rebuild exon 3296581 3296705 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.1"; Scaffold003 rebuild transcript 3294368 3296240 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.2"; gene_name "(1)SLC14A"; annotation "(1)solute carrier family 14 (urea transporter)(2)hypothetical protein."; Pfam "[UT] Urea transporter"; KO "(1)K08716"; Scaffold003 rebuild exon 3294368 3295280 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.2"; Scaffold003 rebuild exon 3295353 3295726 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.2"; Scaffold003 rebuild exon 3295911 3296240 . + . gene_id "RvY_07604"; transcript_id "RvY_07604.2"; Scaffold003 rebuild transcript 3297148 3298030 . + . gene_id "RvY_07605"; transcript_id "RvY_07605.1"; gene_name "BIRC5"; annotation "baculoviral IAP repeat-containing 5"; Pfam "[zf-C3HC] C3HC zinc finger-like|[BIR] Inhibitor of Apoptosis domain"; CDD "Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger."; KO "K08731"; Scaffold003 rebuild exon 3297148 3297471 . + . gene_id "RvY_07605"; transcript_id "RvY_07605.1"; Scaffold003 rebuild exon 3297749 3298030 . + . gene_id "RvY_07605"; transcript_id "RvY_07605.1"; Scaffold003 rebuild transcript 3298191 3301071 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; gene_name "CPA1"; annotation "carboxypeptidase A1 [EC:3.4.17.1]"; Pfam "[Peptidase_M14] Zinc carboxypeptidase|[Propep_M14] Carboxypeptidase activation peptide"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; EC "EC3.4.17.-|EC3.4.17.1"; KO "K08779"; similar_genes "MCPAL_NANOT(e-value:1.7e-06;bit-score:51.0)"; Scaffold003 rebuild exon 3298191 3298309 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3298413 3298484 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3298595 3298606 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3298689 3298773 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3298837 3298974 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299057 3299126 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299200 3299282 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299363 3299407 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299499 3299580 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299642 3299687 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299756 3299912 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3299987 3300074 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3300137 3300285 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3300819 3300915 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild exon 3300989 3301071 . - . gene_id "RvY_07606"; transcript_id "RvY_07606.1"; Scaffold003 rebuild transcript 3302038 3304473 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase|[Propep_M14] Carboxypeptidase activation peptide"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; Scaffold003 rebuild exon 3302038 3302337 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3302604 3302897 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3302973 3303017 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3303233 3303314 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3303393 3303438 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3303512 3303668 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3303739 3303823 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3303895 3304043 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3304224 3304320 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild exon 3304379 3304473 . - . gene_id "RvY_07607"; transcript_id "RvY_07607.1"; Scaffold003 rebuild transcript 3305060 3311561 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[PSI] Plexin repeat|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; similar_genes "ATRN_MOUSE(e-value:3.0e-10;bit-score:63.0)"; Scaffold003 rebuild exon 3305060 3305169 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3305402 3305644 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3305704 3305965 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3306028 3306256 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3306558 3307003 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3307302 3307569 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3307637 3307811 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3307882 3308225 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3308465 3308819 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3308882 3309162 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3309678 3309979 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3310119 3310192 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3310442 3310666 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3310775 3310818 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild exon 3311209 3311561 . - . gene_id "RvY_07608"; transcript_id "RvY_07608.1"; Scaffold003 rebuild transcript 3312342 3313097 . + . gene_id "RvY_07609"; transcript_id "RvY_07609.1"; gene_name "RP-S18e"; annotation "40S ribosomal protein S18"; Pfam "[Ribosomal_S13] Ribosomal protein S13/S18"; CDD "40S ribosomal protein S18; Provisional"; KO "K02964"; similar_genes "RS18_BRABE(e-value:2.9e-72;bit-score:269.0)"; Scaffold003 rebuild exon 3312342 3312347 . + . gene_id "RvY_07609"; transcript_id "RvY_07609.1"; Scaffold003 rebuild exon 3312411 3312509 . + . gene_id "RvY_07609"; transcript_id "RvY_07609.1"; Scaffold003 rebuild exon 3312632 3312718 . + . gene_id "RvY_07609"; transcript_id "RvY_07609.1"; Scaffold003 rebuild exon 3312822 3313097 . + . gene_id "RvY_07609"; transcript_id "RvY_07609.1"; Scaffold003 rebuild transcript 3313256 3315985 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; annotation "hypothetical protein."; Pfam "[DUF1741]"; similar_genes "CJ076_HUMAN(e-value:2.2e-19;bit-score:93.0)"; Scaffold003 rebuild exon 3313256 3313465 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3313524 3313808 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3313872 3314243 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3314308 3314544 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3314619 3314897 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3315005 3315259 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3315321 3315419 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3315484 3315570 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3315652 3315717 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3315780 3315833 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild exon 3315911 3315985 . - . gene_id "RvY_07610"; transcript_id "RvY_07610.1"; Scaffold003 rebuild transcript 3316376 3318310 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; gene_name "TFIIH2"; annotation "transcription initiation factor TFIIH subunit H2"; Pfam "[C1_4] TFIIH C1-like domain|[Ssl1] Ssl1-like|[VWA_2] von Willebrand factor type A domain"; CDD "Ssl1-like. Ssl1-like proteins are 40kDa subunits of the Transcription factor II H complex."; KO "K03142"; similar_genes "TF2H2_RAT(e-value:3.9e-25;bit-score:113.0)"; Scaffold003 rebuild exon 3316376 3316440 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3316552 3316666 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3316761 3316847 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3316936 3317041 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3317123 3317319 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3317430 3317594 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3317660 3317690 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3317756 3317810 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3317879 3318088 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild exon 3318151 3318310 . + . gene_id "RvY_07611"; transcript_id "RvY_07611.1"; Scaffold003 rebuild transcript 3318876 3319217 . + . gene_id "RvY_07612"; transcript_id "RvY_07612.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3318876 3319217 . + . gene_id "RvY_07612"; transcript_id "RvY_07612.1"; Scaffold003 rebuild transcript 3319521 3322923 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; gene_name "WD40"; annotation "WD repeat-containing protein 33"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K15542"; similar_genes "WDR33_HUMAN(e-value:8.5e-55;bit-score:211.0)"; Scaffold003 rebuild exon 3319521 3319944 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3320342 3320723 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3320799 3320852 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3320925 3321016 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3321102 3321212 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3321298 3321376 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3321443 3321597 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3321656 3322035 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3322098 3322193 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3322274 3322378 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3322444 3322512 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild exon 3322585 3322923 . - . gene_id "RvY_07613"; transcript_id "RvY_07613.1"; Scaffold003 rebuild transcript 3323480 3325790 . + . gene_id "RvY_07614"; transcript_id "RvY_07614.1"; annotation "hypothetical protein."; Pfam "[Synaptobrevin]"; Scaffold003 rebuild exon 3323480 3323576 . + . gene_id "RvY_07614"; transcript_id "RvY_07614.1"; Scaffold003 rebuild exon 3325168 3325790 . + . gene_id "RvY_07614"; transcript_id "RvY_07614.1"; Scaffold003 rebuild transcript 3326002 3332030 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; gene_name "CAP_ED"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[cNMP_binding] Cyclic nucleotide-binding domain|(1)[Ion_trans] Ion transport protein"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; Scaffold003 rebuild exon 3326002 3326100 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3326175 3326471 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3326546 3327330 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3327477 3328300 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3328365 3328595 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3328662 3328977 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3329082 3329456 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3329742 3330513 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3330747 3331013 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3331094 3331156 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild exon 3331218 3332030 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.1"; Scaffold003 rebuild transcript 3328994 3332219 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; gene_name "CAP_ED"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[cNMP_binding] Cyclic nucleotide-binding domain|(1)[Ion_trans] Ion transport protein"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; Scaffold003 rebuild exon 3328994 3329013 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild exon 3329082 3329456 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild exon 3329742 3330513 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild exon 3330747 3331013 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild exon 3331094 3331156 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild exon 3331218 3332042 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild exon 3332103 3332219 . - . gene_id "RvY_07615"; transcript_id "RvY_07615.2"; Scaffold003 rebuild transcript 3336328 3345083 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; gene_name "CAP_ED"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; Scaffold003 rebuild exon 3336328 3336553 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3336626 3336740 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3336823 3337273 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3337478 3337714 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3337777 3338395 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3338681 3339123 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3339197 3339230 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3339330 3339475 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3339562 3339658 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3339723 3340120 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3340192 3340237 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3340516 3341084 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3341139 3341283 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3341458 3342078 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3342316 3342897 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3343199 3343589 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3344178 3344568 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3344626 3344922 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild exon 3344985 3345083 . + . gene_id "RvY_07616"; transcript_id "RvY_07616.1"; Scaffold003 rebuild transcript 3345144 3346935 . - . gene_id "RvY_07617"; transcript_id "RvY_07617.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[Trichoplein] Tumour suppressor, Mitostatin"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 3345144 3345746 . - . gene_id "RvY_07617"; transcript_id "RvY_07617.1"; Scaffold003 rebuild exon 3345826 3346134 . - . gene_id "RvY_07617"; transcript_id "RvY_07617.1"; Scaffold003 rebuild exon 3346240 3346935 . - . gene_id "RvY_07617"; transcript_id "RvY_07617.1"; Scaffold003 rebuild transcript 3346375 3346762 . + . gene_id "RvY_07618"; transcript_id "RvY_07618.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3346375 3346457 . + . gene_id "RvY_07618"; transcript_id "RvY_07618.1"; Scaffold003 rebuild exon 3346618 3346762 . + . gene_id "RvY_07618"; transcript_id "RvY_07618.1"; Scaffold003 rebuild transcript 3347906 3351382 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; gene_name "EGF_CA"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain|[cEGF] Complement Clr-like EGF-like|[CUB]|[EGF_CA] Calcium-binding EGF domain"; CDD "Calcium-binding EGF-like domain."; Scaffold003 rebuild exon 3347906 3348088 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3348293 3348467 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3348581 3348700 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3348797 3349213 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3349381 3349940 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3350023 3350075 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3350146 3350345 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3350403 3350774 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild exon 3351030 3351382 . + . gene_id "RvY_07619"; transcript_id "RvY_07619.1"; Scaffold003 rebuild transcript 3351625 3351840 . + . gene_id "RvY_07620"; transcript_id "RvY_07620.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3351625 3351840 . + . gene_id "RvY_07620"; transcript_id "RvY_07620.1"; Scaffold003 rebuild transcript 3352526 3353655 . + . gene_id "RvY_07621"; transcript_id "RvY_07621.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; similar_genes "TSSK6_MOUSE(e-value:3.5e-11;bit-score:66.0)"; Scaffold003 rebuild exon 3352526 3353326 . + . gene_id "RvY_07621"; transcript_id "RvY_07621.1"; Scaffold003 rebuild exon 3353620 3353655 . + . gene_id "RvY_07621"; transcript_id "RvY_07621.1"; Scaffold003 rebuild transcript 3354113 3365224 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; annotation "Neurobeachin-like protein 1"; Pfam "[WD40] WD domain, G-beta repeat|[Beach] Beige/BEACH domain|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily"; similar_genes "NBEL1_HUMAN(e-value:2.2e-125;bit-score:446.0)"; Scaffold003 rebuild exon 3354113 3354263 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3354496 3354644 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3354717 3355090 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3355159 3355331 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3355400 3355599 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3355665 3356107 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3356321 3356592 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3356660 3356880 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3356949 3357056 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3357133 3357266 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3357336 3357751 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3358003 3358751 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3358913 3359370 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3359584 3359962 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3360071 3360159 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3360222 3360806 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3361003 3361296 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3361376 3361747 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3362035 3362555 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3362674 3362810 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3362892 3363100 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3363166 3363705 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3363803 3364153 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3364252 3364325 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3364402 3364505 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3364583 3364853 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3364915 3365024 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild exon 3365126 3365224 . - . gene_id "RvY_07622"; transcript_id "RvY_07622.1"; Scaffold003 rebuild transcript 3365849 3366874 . - . gene_id "RvY_07623"; transcript_id "RvY_07623.1"; annotation "putative AN1-type zinc finger protein 2B"; Pfam "[zf-AN1] AN1-like Zinc finger"; similar_genes "ZFN2B_MOUSE(e-value:8.1e-32;bit-score:135.0)"; Scaffold003 rebuild exon 3365849 3366119 . - . gene_id "RvY_07623"; transcript_id "RvY_07623.1"; Scaffold003 rebuild exon 3366186 3366536 . - . gene_id "RvY_07623"; transcript_id "RvY_07623.1"; Scaffold003 rebuild exon 3366646 3366688 . - . gene_id "RvY_07623"; transcript_id "RvY_07623.1"; Scaffold003 rebuild exon 3366805 3366874 . - . gene_id "RvY_07623"; transcript_id "RvY_07623.1"; Scaffold003 rebuild transcript 3367862 3371984 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; annotation "UPF0663 transmembrane protein C17orf28 homolog"; Pfam "[Hid1] High-temperature-induced dauer-formation protein|[Dymeclin] Dyggve-Melchior-Clausen syndrome protein"; similar_genes "CQ028_MOUSE(e-value:1.7e-106;bit-score:383.0)"; Scaffold003 rebuild exon 3367862 3367927 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3368039 3368252 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3368333 3368553 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3368681 3368731 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3368813 3368978 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3369044 3369303 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3369614 3369811 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3369870 3369960 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3370039 3370190 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3370262 3370340 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3370425 3370486 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3370582 3370684 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3370769 3371023 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3371105 3371256 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3371322 3371447 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3371532 3371623 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3371696 3371854 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild exon 3371921 3371984 . + . gene_id "RvY_07624"; transcript_id "RvY_07624.1"; Scaffold003 rebuild transcript 3372794 3376460 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; annotation "hypothetical protein."; Pfam "[Med14] Mediator complex subunit MED14"; KO "K15156"; Scaffold003 rebuild exon 3372794 3373436 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; Scaffold003 rebuild exon 3373639 3373963 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; Scaffold003 rebuild exon 3374226 3374633 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; Scaffold003 rebuild exon 3374753 3375283 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; Scaffold003 rebuild exon 3375354 3375576 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; Scaffold003 rebuild exon 3375657 3376460 . - . gene_id "RvY_07625"; transcript_id "RvY_07625.1"; Scaffold003 rebuild transcript 3376951 3378384 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; gene_name "WD40"; annotation "Probable cytosolic iron-sulfur protein assembly protein"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "CIAO1_NEMVE(e-value:8.2e-51;bit-score:198.0)"; Scaffold003 rebuild exon 3376951 3377083 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; Scaffold003 rebuild exon 3377154 3377417 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; Scaffold003 rebuild exon 3377491 3377579 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; Scaffold003 rebuild exon 3377661 3377759 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; Scaffold003 rebuild exon 3377882 3377972 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; Scaffold003 rebuild exon 3378053 3378384 . + . gene_id "RvY_07626"; transcript_id "RvY_07626.1"; Scaffold003 rebuild transcript 3379329 3379577 . - . gene_id "RvY_07627"; transcript_id "RvY_07627.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3379329 3379577 . - . gene_id "RvY_07627"; transcript_id "RvY_07627.1"; Scaffold003 rebuild transcript 3379689 3380000 . + . gene_id "RvY_07628"; transcript_id "RvY_07628.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3379689 3379712 . + . gene_id "RvY_07628"; transcript_id "RvY_07628.1"; Scaffold003 rebuild exon 3379774 3379813 . + . gene_id "RvY_07628"; transcript_id "RvY_07628.1"; Scaffold003 rebuild exon 3379891 3380000 . + . gene_id "RvY_07628"; transcript_id "RvY_07628.1"; Scaffold003 rebuild transcript 3380689 3381708 . + . gene_id "RvY_07629"; transcript_id "RvY_07629.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3380689 3380893 . + . gene_id "RvY_07629"; transcript_id "RvY_07629.1"; Scaffold003 rebuild exon 3381119 3381708 . + . gene_id "RvY_07629"; transcript_id "RvY_07629.1"; Scaffold003 rebuild transcript 3382021 3383594 . - . gene_id "RvY_07630"; transcript_id "RvY_07630.1"; gene_name "START"; annotation "hypothetical protein."; Pfam "[START]"; CDD "START(STeroidogenic Acute Regulatory (STAR) related lipid Transfer) Domain. These domains are 200-210 amino acid in length and occur in proteins involved in lipid transport (phosphatidylcholine) and metabolism, signal transduction, and transcriptional regulation. The most striking feature of the START domain structure is a predominantly hydrophobic tunnel extending nearly the entire protein and used to binding a single molecule of large lipophilic compounds, like cholesterol."; Scaffold003 rebuild exon 3382021 3382341 . - . gene_id "RvY_07630"; transcript_id "RvY_07630.1"; Scaffold003 rebuild exon 3382411 3382593 . - . gene_id "RvY_07630"; transcript_id "RvY_07630.1"; Scaffold003 rebuild exon 3382667 3382970 . - . gene_id "RvY_07630"; transcript_id "RvY_07630.1"; Scaffold003 rebuild exon 3383047 3383594 . - . gene_id "RvY_07630"; transcript_id "RvY_07630.1"; Scaffold003 rebuild transcript 3384174 3385711 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; gene_name "PSMD6"; annotation "26S proteasome non-ATPase regulatory subunit 6"; Pfam "[RPN7] 26S proteasome subunit RPN7|[PCI]"; CDD "26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]"; KO "K03037"; similar_genes "PSMD6_HUMAN(e-value:1.3e-53;bit-score:207.0)"; Scaffold003 rebuild exon 3384174 3384318 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; Scaffold003 rebuild exon 3384371 3384576 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; Scaffold003 rebuild exon 3384672 3384817 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; Scaffold003 rebuild exon 3384903 3385122 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; Scaffold003 rebuild exon 3385198 3385306 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; Scaffold003 rebuild exon 3385368 3385711 . + . gene_id "RvY_07631"; transcript_id "RvY_07631.1"; Scaffold003 rebuild transcript 3386314 3386628 . + . gene_id "RvY_07632"; transcript_id "RvY_07632.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3386314 3386628 . + . gene_id "RvY_07632"; transcript_id "RvY_07632.1"; Scaffold003 rebuild transcript 3386945 3390259 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; gene_name "RNF14"; annotation "E3 ubiquitin-protein ligase RNF14 [EC:6.3.2.19]"; Pfam "[IBR]"; CDD "DNA polymerase III subunits gamma and tau; Validated"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K11971"; similar_genes "RNF14_MOUSE(e-value:2.0e-09;bit-score:60.0)"; Scaffold003 rebuild exon 3386945 3386955 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3387056 3387142 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3387219 3387683 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3387915 3388182 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3388315 3388487 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3388572 3388726 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3388836 3388909 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3388989 3389438 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3389626 3390080 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild exon 3390157 3390259 . - . gene_id "RvY_07633"; transcript_id "RvY_07633.1"; Scaffold003 rebuild transcript 3391122 3392502 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; annotation "hypothetical protein."; Pfam "[SNAPc_SNAP43] Small nuclear RNA activating complex (SNAPc), subunit SNAP43"; Scaffold003 rebuild exon 3391122 3391312 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; Scaffold003 rebuild exon 3391440 3391494 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; Scaffold003 rebuild exon 3391622 3391750 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; Scaffold003 rebuild exon 3391886 3392029 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; Scaffold003 rebuild exon 3392095 3392196 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; Scaffold003 rebuild exon 3392326 3392502 . + . gene_id "RvY_07634"; transcript_id "RvY_07634.1"; Scaffold003 rebuild transcript 3392841 3393479 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.1"; annotation "hypothetical protein."; Pfam "[Sedlin_N] Sedlin, N-terminal conserved region|[Sybindin] Sybindin-like family"; Scaffold003 rebuild exon 3392841 3392942 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.1"; Scaffold003 rebuild exon 3393024 3393299 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.1"; Scaffold003 rebuild exon 3393369 3393479 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.1"; Scaffold003 rebuild transcript 3392841 3393479 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.2"; annotation "hypothetical protein."; Pfam "[Sedlin_N] Sedlin, N-terminal conserved region|[Sybindin] Sybindin-like family"; Scaffold003 rebuild exon 3392841 3392942 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.2"; Scaffold003 rebuild exon 3393024 3393293 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.2"; Scaffold003 rebuild exon 3393369 3393479 . - . gene_id "RvY_07635"; transcript_id "RvY_07635.2"; Scaffold003 rebuild transcript 3395409 3396738 . + . gene_id "RvY_07636"; transcript_id "RvY_07636.1"; gene_name "NSDHL"; annotation "putative Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|[NAD_binding_10] NADH(P)-binding|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; EC "EC1.1.1.170"; KO "K07748"; similar_genes "NSDHL_MOUSE(e-value:1.5e-39;bit-score:160.0)"; Scaffold003 rebuild exon 3395409 3395800 . + . gene_id "RvY_07636"; transcript_id "RvY_07636.1"; Scaffold003 rebuild exon 3395864 3395993 . + . gene_id "RvY_07636"; transcript_id "RvY_07636.1"; Scaffold003 rebuild exon 3396169 3396738 . + . gene_id "RvY_07636"; transcript_id "RvY_07636.1"; Scaffold003 rebuild transcript 3397028 3399418 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; gene_name "ECHS1"; annotation "Enoyl-CoA hydratase, mitochondrial"; Pfam "[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "enoyl-CoA hydratase; Provisional"; EC "EC4.2.1.17"; KO "K07511"; similar_genes "ECHM_RAT(e-value:9.3e-67;bit-score:251.0)"; Scaffold003 rebuild exon 3397028 3397090 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3397205 3397272 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3397338 3397457 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3397998 3398102 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3398163 3398262 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3398395 3398723 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3398836 3399043 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild exon 3399173 3399418 . - . gene_id "RvY_07637"; transcript_id "RvY_07637.1"; Scaffold003 rebuild transcript 3399597 3404659 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; gene_name "KIF5"; annotation "Kinesin heavy chain"; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward."; KO "K10396"; similar_genes "KINH_STRPU(e-value:3.8e-144;bit-score:508.0)"; Scaffold003 rebuild exon 3399597 3399832 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3400026 3400242 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3400307 3400616 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3400718 3400819 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3400911 3401097 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3401242 3401455 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3401524 3401796 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3401857 3402132 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3402201 3402472 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3402541 3402698 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3402800 3402948 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3403016 3403438 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3403516 3403620 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3403989 3404062 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild exon 3404404 3404659 . - . gene_id "RvY_07638"; transcript_id "RvY_07638.1"; Scaffold003 rebuild transcript 3406173 3407394 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; gene_name "PX_PLD"; annotation "hypothetical protein."; Pfam "[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membranes while PLD2 is associated with plasma membranes. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction."; Scaffold003 rebuild exon 3406173 3406308 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; Scaffold003 rebuild exon 3406378 3406579 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; Scaffold003 rebuild exon 3406648 3406695 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; Scaffold003 rebuild exon 3406783 3406857 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; Scaffold003 rebuild exon 3406948 3407047 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; Scaffold003 rebuild exon 3407122 3407394 . + . gene_id "RvY_07639"; transcript_id "RvY_07639.1"; Scaffold003 rebuild transcript 3407516 3411281 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; gene_name "(1)PLD(2)PLDc"; annotation "putative Phospholipase D1"; Pfam "[PLDc] Phospholipase D Active site motif|(1)[PLDc_2] PLD-like domain"; CDD "Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are Scaffold003 rebuild exon 3407516 3407629 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3407705 3407965 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408044 3408154 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408219 3408253 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408313 3408387 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408446 3408497 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408583 3408777 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408861 3408919 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3408993 3409072 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3409141 3409221 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3409355 3409610 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3409674 3409767 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3409831 3409922 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3409985 3410101 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3410200 3410246 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3410325 3410392 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3410456 3410673 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3410750 3410894 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3410990 3411187 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild exon 3411255 3411281 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.1"; Scaffold003 rebuild transcript 3407516 3409650 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; gene_name "(1)PLD(2)PLDc"; annotation "putative Phospholipase D1"; Pfam "[PLDc] Phospholipase D Active site motif|(1)[PLDc_2] PLD-like domain"; CDD "Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are Scaffold003 rebuild exon 3407516 3407629 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3407705 3407965 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408044 3408154 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408219 3408253 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408313 3408387 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408446 3408497 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408583 3408777 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408861 3408919 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3408993 3409072 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3409141 3409221 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild exon 3409355 3409650 . + . gene_id "RvY_07640"; transcript_id "RvY_07640.2"; Scaffold003 rebuild transcript 3412575 3414041 . + . gene_id "RvY_07641"; transcript_id "RvY_07641.1"; annotation "hypothetical protein."; Pfam "[NPDC1] Neural proliferation differentiation control-1 protein (NPDC1)"; Scaffold003 rebuild exon 3412575 3413068 . + . gene_id "RvY_07641"; transcript_id "RvY_07641.1"; Scaffold003 rebuild exon 3413132 3414041 . + . gene_id "RvY_07641"; transcript_id "RvY_07641.1"; Scaffold003 rebuild transcript 3414295 3415360 . - . gene_id "RvY_07642"; transcript_id "RvY_07642.1"; gene_name "PRDX6"; annotation "putative Peroxiredoxin-6"; Pfam "[AhpC-TSA] AhpC/TSA family|[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins."; EC "EC1.11.1.15"; KO "K11188"; similar_genes "PRDX6_CHICK(e-value:1.1e-31;bit-score:134.0)"; Scaffold003 rebuild exon 3414295 3414417 . - . gene_id "RvY_07642"; transcript_id "RvY_07642.1"; Scaffold003 rebuild exon 3414517 3414595 . - . gene_id "RvY_07642"; transcript_id "RvY_07642.1"; Scaffold003 rebuild exon 3414684 3414901 . - . gene_id "RvY_07642"; transcript_id "RvY_07642.1"; Scaffold003 rebuild exon 3415025 3415181 . - . gene_id "RvY_07642"; transcript_id "RvY_07642.1"; Scaffold003 rebuild exon 3415272 3415360 . - . gene_id "RvY_07642"; transcript_id "RvY_07642.1"; Scaffold003 rebuild transcript 3415847 3416122 . + . gene_id "RvY_07643"; transcript_id "RvY_07643.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3415847 3416122 . + . gene_id "RvY_07643"; transcript_id "RvY_07643.1"; Scaffold003 rebuild transcript 3416825 3417800 . - . gene_id "RvY_07644"; transcript_id "RvY_07644.1"; annotation "hypothetical protein."; Pfam "[CGI-121] Kinase binding protein CGI-121"; Scaffold003 rebuild exon 3416825 3416935 . - . gene_id "RvY_07644"; transcript_id "RvY_07644.1"; Scaffold003 rebuild exon 3417035 3417223 . - . gene_id "RvY_07644"; transcript_id "RvY_07644.1"; Scaffold003 rebuild exon 3417329 3417454 . - . gene_id "RvY_07644"; transcript_id "RvY_07644.1"; Scaffold003 rebuild exon 3417519 3417800 . - . gene_id "RvY_07644"; transcript_id "RvY_07644.1"; Scaffold003 rebuild transcript 3418693 3420219 . + . gene_id "RvY_07645"; transcript_id "RvY_07645.1"; gene_name "COG4775"; annotation "hypothetical protein."; Pfam "[Bac_surface_Ag] Surface antigen"; CDD "Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]"; Scaffold003 rebuild exon 3418693 3418709 . + . gene_id "RvY_07645"; transcript_id "RvY_07645.1"; Scaffold003 rebuild exon 3418780 3419201 . + . gene_id "RvY_07645"; transcript_id "RvY_07645.1"; Scaffold003 rebuild exon 3419318 3420219 . + . gene_id "RvY_07645"; transcript_id "RvY_07645.1"; Scaffold003 rebuild transcript 3420516 3421156 . - . gene_id "RvY_07646"; transcript_id "RvY_07646.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3420516 3420659 . - . gene_id "RvY_07646"; transcript_id "RvY_07646.1"; Scaffold003 rebuild exon 3420746 3420789 . - . gene_id "RvY_07646"; transcript_id "RvY_07646.1"; Scaffold003 rebuild exon 3420970 3421156 . - . gene_id "RvY_07646"; transcript_id "RvY_07646.1"; Scaffold003 rebuild transcript 3421470 3421802 . - . gene_id "RvY_07647"; transcript_id "RvY_07647.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3421470 3421802 . - . gene_id "RvY_07647"; transcript_id "RvY_07647.1"; Scaffold003 rebuild transcript 3421835 3424358 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "GTR3_PIG(e-value:1.1e-14;bit-score:78.0)"; Scaffold003 rebuild exon 3421835 3421858 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3421953 3422051 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3422153 3422469 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3422548 3422672 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3422769 3423232 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3423304 3423460 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3423542 3423597 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3423693 3423810 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3423909 3423950 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3424027 3424112 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild exon 3424197 3424358 . + . gene_id "RvY_07648"; transcript_id "RvY_07648.1"; Scaffold003 rebuild transcript 3424901 3425459 . - . gene_id "RvY_07649"; transcript_id "RvY_07649.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3424901 3424996 . - . gene_id "RvY_07649"; transcript_id "RvY_07649.1"; Scaffold003 rebuild exon 3425139 3425459 . - . gene_id "RvY_07649"; transcript_id "RvY_07649.1"; Scaffold003 rebuild transcript 3426820 3427214 . + . gene_id "RvY_07650"; transcript_id "RvY_07650.1"; gene_name "ER"; annotation "hypothetical protein."; Pfam "[ER] Enhancer of rudimentary"; CDD "Enhancer of rudimentary. Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene."; Scaffold003 rebuild exon 3426820 3427007 . + . gene_id "RvY_07650"; transcript_id "RvY_07650.1"; Scaffold003 rebuild exon 3427088 3427214 . + . gene_id "RvY_07650"; transcript_id "RvY_07650.1"; Scaffold003 rebuild transcript 3427814 3430142 . + . gene_id "RvY_07651"; transcript_id "RvY_07651.1"; gene_name "clpA"; annotation "Caseinolytic peptidase B protein homolog"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[AAA_16] AAA ATPase domain|[Sigma54_activat] Sigma-54 interaction domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[ClpB_D2-small] C-terminal, D2-small domain, of ClpB protein|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[AAA_2] AAA domain (Cdc48 subfamily)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]"; similar_genes "CLPB_BOVIN(e-value:3.5e-81;bit-score:299.0)"; Scaffold003 rebuild exon 3427814 3428273 . + . gene_id "RvY_07651"; transcript_id "RvY_07651.1"; Scaffold003 rebuild exon 3428375 3428592 . + . gene_id "RvY_07651"; transcript_id "RvY_07651.1"; Scaffold003 rebuild exon 3428853 3430142 . + . gene_id "RvY_07651"; transcript_id "RvY_07651.1"; Scaffold003 rebuild transcript 3430169 3431610 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.1"; annotation "hypothetical protein."; Pfam "[MAGE] MAGE family"; Scaffold003 rebuild exon 3430169 3430304 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.1"; Scaffold003 rebuild exon 3430384 3430435 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.1"; Scaffold003 rebuild exon 3430541 3430720 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.1"; Scaffold003 rebuild exon 3430795 3431202 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.1"; Scaffold003 rebuild exon 3431271 3431610 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.1"; Scaffold003 rebuild transcript 3430380 3431610 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.2"; annotation "hypothetical protein."; Pfam "[MAGE] MAGE family"; Scaffold003 rebuild exon 3430380 3430435 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.2"; Scaffold003 rebuild exon 3430541 3430720 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.2"; Scaffold003 rebuild exon 3430795 3431202 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.2"; Scaffold003 rebuild exon 3431271 3431610 . - . gene_id "RvY_07652"; transcript_id "RvY_07652.2"; Scaffold003 rebuild transcript 3432133 3433336 . - . gene_id "RvY_07653"; transcript_id "RvY_07653.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold003 rebuild exon 3432133 3432965 . - . gene_id "RvY_07653"; transcript_id "RvY_07653.1"; Scaffold003 rebuild exon 3433036 3433336 . - . gene_id "RvY_07653"; transcript_id "RvY_07653.1"; Scaffold003 rebuild transcript 3434336 3434578 . + . gene_id "RvY_07654"; transcript_id "RvY_07654.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3434336 3434578 . + . gene_id "RvY_07654"; transcript_id "RvY_07654.1"; Scaffold003 rebuild transcript 3434663 3438176 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; product "DNA topoisomerase 2-binding protein/BRCT?"; gene_name "TOPBP1"; annotation "DNA topoisomerase 2-binding protein/BRCT? | topoisomerase (DNA) II binding protein 1"; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[PTCB-BRCT] twin BRCT domain"; CDD "breast cancer carboxy-terminal domain."; KO "K10728"; Scaffold003 rebuild exon 3434663 3434752 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3434818 3434981 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3435053 3435197 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3435257 3435364 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3435445 3435630 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3435713 3435872 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3435932 3436096 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3436157 3436390 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3436481 3436934 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3437002 3437053 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3437111 3437371 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3437436 3437662 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild exon 3437873 3438176 . + . gene_id "RvY_07655"; transcript_id "RvY_07655.1"; Scaffold003 rebuild transcript 3439427 3444002 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3439427 3439553 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3439652 3439820 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3439883 3440218 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3440494 3440668 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3440733 3441010 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3441180 3441608 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3441790 3442515 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3442618 3443475 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild exon 3443534 3444002 . - . gene_id "RvY_07656"; transcript_id "RvY_07656.1"; Scaffold003 rebuild transcript 3445294 3447288 . + . gene_id "RvY_07657"; transcript_id "RvY_07657.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3445294 3445535 . + . gene_id "RvY_07657"; transcript_id "RvY_07657.1"; Scaffold003 rebuild exon 3445584 3445857 . + . gene_id "RvY_07657"; transcript_id "RvY_07657.1"; Scaffold003 rebuild exon 3446509 3446973 . + . gene_id "RvY_07657"; transcript_id "RvY_07657.1"; Scaffold003 rebuild exon 3447067 3447288 . + . gene_id "RvY_07657"; transcript_id "RvY_07657.1"; Scaffold003 rebuild transcript 3448443 3451084 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; gene_name "CaiC"; annotation "hypothetical protein."; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]"; EC "EC6.2.1.-"; similar_genes "ACSF3_XENLA(e-value:1.2e-11;bit-score:68.0)"; Scaffold003 rebuild exon 3448443 3448480 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild exon 3448555 3448979 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild exon 3449072 3449347 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild exon 3449404 3449594 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild exon 3449668 3449922 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild exon 3450041 3450461 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild exon 3450714 3451084 . + . gene_id "RvY_07658"; transcript_id "RvY_07658.1"; Scaffold003 rebuild transcript 3451884 3453168 . + . gene_id "RvY_07659"; transcript_id "RvY_07659.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3451884 3452262 . + . gene_id "RvY_07659"; transcript_id "RvY_07659.1"; Scaffold003 rebuild exon 3452338 3452471 . + . gene_id "RvY_07659"; transcript_id "RvY_07659.1"; Scaffold003 rebuild exon 3452937 3453060 . + . gene_id "RvY_07659"; transcript_id "RvY_07659.1"; Scaffold003 rebuild exon 3453065 3453168 . + . gene_id "RvY_07659"; transcript_id "RvY_07659.1"; Scaffold003 rebuild transcript 3453263 3455528 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; gene_name "PEX5"; annotation "peroxin-5"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; KO "K13342"; Scaffold003 rebuild exon 3453263 3453476 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3453586 3453830 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3453922 3454003 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3454070 3454279 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3454359 3454429 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3454505 3454645 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3454722 3455132 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild exon 3455289 3455528 . - . gene_id "RvY_07660"; transcript_id "RvY_07660.1"; Scaffold003 rebuild transcript 3456190 3457196 . - . gene_id "RvY_07661"; transcript_id "RvY_07661.1"; gene_name "SURF4"; annotation "putative Surfeit locus protein 4"; Pfam "[SURF4] SURF4 family"; CDD "SURF4 family."; similar_genes "SURF4_CHICK(e-value:1.4e-46;bit-score:184.0)"; Scaffold003 rebuild exon 3456190 3456681 . - . gene_id "RvY_07661"; transcript_id "RvY_07661.1"; Scaffold003 rebuild exon 3456837 3457196 . - . gene_id "RvY_07661"; transcript_id "RvY_07661.1"; Scaffold003 rebuild transcript 3458048 3459204 . + . gene_id "RvY_07662"; transcript_id "RvY_07662.1"; gene_name "MLX"; annotation "MAX-like protein X"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09113"; similar_genes "MLX_MOUSE(e-value:1.0e-08;bit-score:58.0)"; Scaffold003 rebuild exon 3458048 3458407 . + . gene_id "RvY_07662"; transcript_id "RvY_07662.1"; Scaffold003 rebuild exon 3458483 3458573 . + . gene_id "RvY_07662"; transcript_id "RvY_07662.1"; Scaffold003 rebuild exon 3458642 3458741 . + . gene_id "RvY_07662"; transcript_id "RvY_07662.1"; Scaffold003 rebuild exon 3458798 3458882 . + . gene_id "RvY_07662"; transcript_id "RvY_07662.1"; Scaffold003 rebuild exon 3459019 3459204 . + . gene_id "RvY_07662"; transcript_id "RvY_07662.1"; Scaffold003 rebuild transcript 3459746 3460554 . - . gene_id "RvY_07663"; transcript_id "RvY_07663.1"; gene_name "DYNLRB"; annotation "dynein light chain roadblock-type"; Pfam "[Robl_LC7] Roadblock/LC7 domain"; CDD "Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role."; KO "K10419"; similar_genes "DLRB2_BOVIN(e-value:2.0e-11;bit-score:67.0)"; Scaffold003 rebuild exon 3459746 3459805 . - . gene_id "RvY_07663"; transcript_id "RvY_07663.1"; Scaffold003 rebuild exon 3459886 3459944 . - . gene_id "RvY_07663"; transcript_id "RvY_07663.1"; Scaffold003 rebuild exon 3460035 3460202 . - . gene_id "RvY_07663"; transcript_id "RvY_07663.1"; Scaffold003 rebuild exon 3460282 3460399 . - . gene_id "RvY_07663"; transcript_id "RvY_07663.1"; Scaffold003 rebuild exon 3460549 3460554 . - . gene_id "RvY_07663"; transcript_id "RvY_07663.1"; Scaffold003 rebuild transcript 3461042 3462217 . + . gene_id "RvY_07664"; transcript_id "RvY_07664.1"; gene_name "ELP4"; annotation "elongator complex protein 4"; Pfam "[PAXNEB] PAXNEB protein"; KO "K11375"; Scaffold003 rebuild exon 3461042 3461444 . + . gene_id "RvY_07664"; transcript_id "RvY_07664.1"; Scaffold003 rebuild exon 3461505 3462217 . + . gene_id "RvY_07664"; transcript_id "RvY_07664.1"; Scaffold003 rebuild transcript 3463103 3463381 . - . gene_id "RvY_07665"; transcript_id "RvY_07665.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3463103 3463381 . - . gene_id "RvY_07665"; transcript_id "RvY_07665.1"; Scaffold003 rebuild transcript 3463155 3464826 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 3463155 3463383 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.1"; Scaffold003 rebuild exon 3463678 3463961 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.1"; Scaffold003 rebuild exon 3464072 3464340 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.1"; Scaffold003 rebuild exon 3464511 3464826 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.1"; Scaffold003 rebuild transcript 3463155 3464344 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 3463155 3463383 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.2"; Scaffold003 rebuild exon 3463678 3463961 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.2"; Scaffold003 rebuild exon 3464072 3464344 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.2"; Scaffold003 rebuild transcript 3463753 3464826 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold003 rebuild exon 3463753 3463785 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.3"; Scaffold003 rebuild exon 3463875 3463961 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.3"; Scaffold003 rebuild exon 3464072 3464340 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.3"; Scaffold003 rebuild exon 3464511 3464826 . + . gene_id "RvY_07666"; transcript_id "RvY_07666.3"; Scaffold003 rebuild transcript 3465355 3487363 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin_pro] Cadherin prodomain like|[Laminin_G_2] Laminin G domain|[Cadherin_2] Cadherin-like|[Cadherin]|[Laminin_G_1] Laminin G domain"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "DS_DROME(e-value:8.1e-15;bit-score:78.0)"; Scaffold003 rebuild exon 3465355 3465632 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3465998 3466802 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3466877 3467173 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3467254 3467736 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3467810 3468609 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3468685 3469033 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3469117 3470622 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3470932 3471243 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3471317 3472230 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3472310 3472545 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3472605 3472773 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3473601 3474027 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3474086 3474940 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3475027 3475569 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3480235 3480332 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3480621 3481532 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3481849 3482547 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3482697 3483278 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3483581 3484060 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3484375 3485211 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3485410 3485656 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3485743 3485919 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3486062 3486533 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild exon 3486687 3487363 . - . gene_id "RvY_07667"; transcript_id "RvY_07667.1"; Scaffold003 rebuild transcript 3478932 3479123 . + . gene_id "RvY_07668"; transcript_id "RvY_07668.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3478932 3479123 . + . gene_id "RvY_07668"; transcript_id "RvY_07668.1"; Scaffold003 rebuild transcript 3480934 3481197 . + . gene_id "RvY_07669"; transcript_id "RvY_07669.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3480934 3481197 . + . gene_id "RvY_07669"; transcript_id "RvY_07669.1"; Scaffold003 rebuild transcript 3488880 3491782 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; gene_name "PH_anillin"; annotation "hypothetical protein."; Pfam "[PH]"; CDD "Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes."; Scaffold003 rebuild exon 3488880 3488979 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3489051 3489205 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3489278 3489385 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3489458 3489754 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3489826 3489995 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3490067 3490237 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3490313 3490448 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3490536 3490673 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3490737 3490838 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3490952 3491122 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3491182 3491472 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3491544 3491688 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild exon 3491748 3491782 . - . gene_id "RvY_07670"; transcript_id "RvY_07670.1"; Scaffold003 rebuild transcript 3493159 3494951 . - . gene_id "RvY_07671"; transcript_id "RvY_07671.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold003 rebuild exon 3493159 3493798 . - . gene_id "RvY_07671"; transcript_id "RvY_07671.1"; Scaffold003 rebuild exon 3494116 3494951 . - . gene_id "RvY_07671"; transcript_id "RvY_07671.1"; Scaffold003 rebuild transcript 3495776 3497636 . + . gene_id "RvY_07672"; transcript_id "RvY_07672.1"; gene_name "HAT1"; annotation "histone acetyltransferase 1 [EC:2.3.1.48]"; Pfam "[Hat1_N] Histone acetyl transferase HAT1 N-terminus"; EC "EC2.3.1.48"; KO "K11303"; Scaffold003 rebuild exon 3495776 3496223 . + . gene_id "RvY_07672"; transcript_id "RvY_07672.1"; Scaffold003 rebuild exon 3496290 3496976 . + . gene_id "RvY_07672"; transcript_id "RvY_07672.1"; Scaffold003 rebuild exon 3497042 3497325 . + . gene_id "RvY_07672"; transcript_id "RvY_07672.1"; Scaffold003 rebuild exon 3497400 3497636 . + . gene_id "RvY_07672"; transcript_id "RvY_07672.1"; Scaffold003 rebuild transcript 3498521 3502049 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; gene_name "COG5141"; annotation "hypothetical protein."; Pfam "[zf-HC5HC2H_2] PHD-zinc-finger like domain|[zf-HC5HC2H] PHD-like zinc-binding domain|[PHD] PHD-finger"; CDD "PHD zinc finger-containing protein [General function prediction only]"; Scaffold003 rebuild exon 3498521 3498932 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; Scaffold003 rebuild exon 3499150 3499428 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; Scaffold003 rebuild exon 3499489 3499766 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; Scaffold003 rebuild exon 3500060 3501122 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; Scaffold003 rebuild exon 3501422 3501886 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; Scaffold003 rebuild exon 3501958 3502049 . + . gene_id "RvY_07673"; transcript_id "RvY_07673.1"; Scaffold003 rebuild transcript 3502542 3506169 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; gene_name "ADF"; annotation "putative Drebrin-like protein"; Pfam "[SH3_2] Variant SH3 domain|[Cofilin_ADF] Cofilin/tropomyosin-type actin-binding protein|[SH3_1] SH3 domain"; CDD "Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments."; similar_genes "DBNL_DROME(e-value:6.0e-28;bit-score:122.0)"; Scaffold003 rebuild exon 3502542 3502612 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3502688 3502753 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3502840 3502953 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3503036 3503301 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3503364 3503816 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3504030 3504290 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3504363 3504578 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3504643 3505154 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3505275 3505349 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3505499 3505577 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3505789 3505822 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3505901 3505956 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild exon 3506090 3506169 . - . gene_id "RvY_07674"; transcript_id "RvY_07674.1"; Scaffold003 rebuild transcript 3507021 3509271 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; gene_name "COPS3"; annotation "COP9 signalosome complex subunit 3"; Pfam "[PCI]"; KO "K12177"; Scaffold003 rebuild exon 3507021 3507211 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3507278 3507539 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3507615 3507689 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3507786 3507887 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3507991 3508137 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3508237 3508344 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3508414 3508485 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3508554 3508640 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3508772 3508885 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3508965 3509045 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild exon 3509134 3509271 . + . gene_id "RvY_07675"; transcript_id "RvY_07675.1"; Scaffold003 rebuild transcript 3509708 3510458 . - . gene_id "RvY_07676"; transcript_id "RvY_07676.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3509708 3509877 . - . gene_id "RvY_07676"; transcript_id "RvY_07676.1"; Scaffold003 rebuild exon 3510041 3510458 . - . gene_id "RvY_07676"; transcript_id "RvY_07676.1"; Scaffold003 rebuild transcript 3509595 3510231 . - . gene_id "RvY_07676"; transcript_id "RvY_07676.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3509595 3509877 . - . gene_id "RvY_07676"; transcript_id "RvY_07676.2"; Scaffold003 rebuild exon 3510041 3510231 . - . gene_id "RvY_07676"; transcript_id "RvY_07676.2"; Scaffold003 rebuild transcript 3510881 3511219 . - . gene_id "RvY_07677"; transcript_id "RvY_07677.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3510881 3511219 . - . gene_id "RvY_07677"; transcript_id "RvY_07677.1"; Scaffold003 rebuild transcript 3511237 3513339 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; gene_name "DNAJA2"; annotation "DnaJ homolog subfamily A member 2"; Pfam "[DnaJ_CXXCXGXG] DnaJ central domain|[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "DnaJ_C chaperone protein; Provisional"; KO "K09503"; similar_genes "DNJA4_MOUSE(e-value:8.5e-21;bit-score:98.0)"; Scaffold003 rebuild exon 3511237 3511305 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3511413 3511478 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3511550 3511652 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3511733 3511919 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3511982 3512062 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3512122 3512255 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3512314 3512456 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3512650 3512848 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3512952 3513079 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild exon 3513148 3513339 . + . gene_id "RvY_07678"; transcript_id "RvY_07678.1"; Scaffold003 rebuild transcript 3513775 3516479 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; gene_name "Prolidase"; annotation "Xaa-Pro dipeptidase"; Pfam "[AMP_N] Aminopeptidase P, N-terminal domain|[Peptidase_M24] Metallopeptidase family M24"; CDD "Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro."; EC "EC3.4.13.9"; KO "K14213"; similar_genes "PEPD_HUMAN(e-value:1.6e-115;bit-score:413.0)"; Scaffold003 rebuild exon 3513775 3513969 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3514055 3514173 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3514363 3514398 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3514457 3514743 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3514816 3514962 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3515037 3515159 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3515244 3515474 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3515647 3515774 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3515845 3516022 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild exon 3516424 3516479 . - . gene_id "RvY_07679"; transcript_id "RvY_07679.1"; Scaffold003 rebuild transcript 3516986 3518671 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; gene_name "CYT1"; annotation "Cytochrome c1, heme protein, mitochondrial"; Pfam "[Cytochrom_C1] Cytochrome C1 family"; EC "EC1.10.2.2"; KO "K00413"; similar_genes "CY1_MOUSE(e-value:5.8e-75;bit-score:278.0)"; Scaffold003 rebuild exon 3516986 3517138 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3517286 3517339 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3517419 3517570 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3517672 3517798 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3517869 3518039 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3518109 3518256 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3518332 3518432 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild exon 3518504 3518671 . + . gene_id "RvY_07680"; transcript_id "RvY_07680.1"; Scaffold003 rebuild transcript 3518958 3520670 . - . gene_id "RvY_07681"; transcript_id "RvY_07681.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3518958 3519625 . - . gene_id "RvY_07681"; transcript_id "RvY_07681.1"; Scaffold003 rebuild exon 3519810 3519992 . - . gene_id "RvY_07681"; transcript_id "RvY_07681.1"; Scaffold003 rebuild exon 3520061 3520670 . - . gene_id "RvY_07681"; transcript_id "RvY_07681.1"; Scaffold003 rebuild transcript 3524225 3525143 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.1"; gene_name "(1,2,3)DUF1295"; annotation "hypothetical protein."; Pfam "[DUF1295]|(1,2)[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "(1,2,3)Protein of unknown function (DUF1295). This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long."; Scaffold003 rebuild exon 3524225 3524381 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.1"; Scaffold003 rebuild exon 3524600 3524795 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.1"; Scaffold003 rebuild exon 3524876 3525018 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.1"; Scaffold003 rebuild exon 3525079 3525143 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.1"; Scaffold003 rebuild transcript 3524053 3524799 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.2"; gene_name "(1,2,3)DUF1295"; annotation "hypothetical protein."; Pfam "[DUF1295]|(1,2)[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "(1,2,3)Protein of unknown function (DUF1295). This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long."; Scaffold003 rebuild exon 3524053 3524100 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.2"; Scaffold003 rebuild exon 3524201 3524381 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.2"; Scaffold003 rebuild exon 3524600 3524799 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.2"; Scaffold003 rebuild transcript 3523624 3524160 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.3"; gene_name "(1,2,3)DUF1295"; annotation "hypothetical protein."; Pfam "[DUF1295]|(1,2)[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "(1,2,3)Protein of unknown function (DUF1295). This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long."; Scaffold003 rebuild exon 3523624 3523722 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.3"; Scaffold003 rebuild exon 3523797 3523876 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.3"; Scaffold003 rebuild exon 3523950 3524160 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.3"; Scaffold003 rebuild transcript 3524361 3524956 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.4"; gene_name "(1,2,3)DUF1295"; annotation "hypothetical protein."; Pfam "[DUF1295]|(1,2)[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "(1,2,3)Protein of unknown function (DUF1295). This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long."; Scaffold003 rebuild exon 3524361 3524381 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.4"; Scaffold003 rebuild exon 3524600 3524956 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.4"; Scaffold003 rebuild transcript 3523489 3523833 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.5"; gene_name "(1,2,3)DUF1295"; annotation "hypothetical protein."; Pfam "[DUF1295]|(1,2)[Steroid_dh] 3-oxo-5-alpha-steroid 4-dehydrogenase"; CDD "(1,2,3)Protein of unknown function (DUF1295). This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long."; Scaffold003 rebuild exon 3523489 3523833 . + . gene_id "RvY_07682"; transcript_id "RvY_07682.5"; Scaffold003 rebuild transcript 3525219 3526232 . - . gene_id "RvY_07683"; transcript_id "RvY_07683.1"; gene_name "K10836"; annotation "mitochondrial protein-transporting ATPase"; Pfam "[Tim17] Tim17/Tim22/Tim23/Pmp24 family"; KO "K10836"; similar_genes "TIM22_DROME(e-value:3.0e-25;bit-score:113.0)"; Scaffold003 rebuild exon 3525219 3525298 . - . gene_id "RvY_07683"; transcript_id "RvY_07683.1"; Scaffold003 rebuild exon 3525431 3525503 . - . gene_id "RvY_07683"; transcript_id "RvY_07683.1"; Scaffold003 rebuild exon 3525596 3525792 . - . gene_id "RvY_07683"; transcript_id "RvY_07683.1"; Scaffold003 rebuild exon 3525868 3526037 . - . gene_id "RvY_07683"; transcript_id "RvY_07683.1"; Scaffold003 rebuild exon 3526105 3526232 . - . gene_id "RvY_07683"; transcript_id "RvY_07683.1"; Scaffold003 rebuild transcript 3527346 3528086 . - . gene_id "RvY_07684"; transcript_id "RvY_07684.1"; gene_name "DnaJ_bact"; annotation "hypothetical protein."; Pfam "[DnaJ]"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; similar_genes "DNAJ_STAS1(e-value:2.0e-11;bit-score:67.0)"; Scaffold003 rebuild exon 3527346 3527581 . - . gene_id "RvY_07684"; transcript_id "RvY_07684.1"; Scaffold003 rebuild exon 3527647 3527791 . - . gene_id "RvY_07684"; transcript_id "RvY_07684.1"; Scaffold003 rebuild exon 3527892 3527957 . - . gene_id "RvY_07684"; transcript_id "RvY_07684.1"; Scaffold003 rebuild exon 3528018 3528086 . - . gene_id "RvY_07684"; transcript_id "RvY_07684.1"; Scaffold003 rebuild transcript 3529240 3529958 . + . gene_id "RvY_07685"; transcript_id "RvY_07685.1"; annotation "hypothetical protein."; Pfam "[PIG-P]"; Scaffold003 rebuild exon 3529240 3529319 . + . gene_id "RvY_07685"; transcript_id "RvY_07685.1"; Scaffold003 rebuild exon 3529392 3529426 . + . gene_id "RvY_07685"; transcript_id "RvY_07685.1"; Scaffold003 rebuild exon 3529487 3529559 . + . gene_id "RvY_07685"; transcript_id "RvY_07685.1"; Scaffold003 rebuild exon 3529625 3529743 . + . gene_id "RvY_07685"; transcript_id "RvY_07685.1"; Scaffold003 rebuild exon 3529813 3529958 . + . gene_id "RvY_07685"; transcript_id "RvY_07685.1"; Scaffold003 rebuild transcript 3529985 3533920 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; gene_name "PGAP1"; annotation "glycosylphosphatidylinositol deacylase [EC:3.-.-.-]"; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[PGAP1] PGAP1-like protein"; EC "EC3.-.-.-"; KO "K05294"; Scaffold003 rebuild exon 3529985 3530119 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3530179 3530572 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3530630 3530882 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3531090 3531461 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3531812 3532549 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3532779 3532955 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3533015 3533174 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3533418 3533701 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild exon 3533767 3533920 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.1"; Scaffold003 rebuild transcript 3529985 3533711 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; gene_name "PGAP1"; annotation "glycosylphosphatidylinositol deacylase [EC:3.-.-.-]"; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[PGAP1] PGAP1-like protein"; EC "EC3.-.-.-"; KO "K05294"; Scaffold003 rebuild exon 3529985 3530119 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild exon 3530179 3530882 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild exon 3531090 3531461 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild exon 3531812 3532549 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild exon 3532779 3532955 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild exon 3533015 3533174 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild exon 3533418 3533711 . + . gene_id "RvY_07686"; transcript_id "RvY_07686.2"; Scaffold003 rebuild transcript 3534657 3535983 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(1)TRFR_CHICK(e-value:3.9e-06;bit-score:49.0)"; Scaffold003 rebuild exon 3534657 3535060 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.1"; Scaffold003 rebuild exon 3535233 3535448 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.1"; Scaffold003 rebuild exon 3535524 3535983 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.1"; Scaffold003 rebuild transcript 3535447 3536407 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "(1)TRFR_CHICK(e-value:3.9e-06;bit-score:49.0)"; Scaffold003 rebuild exon 3535447 3535448 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.2"; Scaffold003 rebuild exon 3535524 3535836 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.2"; Scaffold003 rebuild exon 3536135 3536407 . + . gene_id "RvY_07687"; transcript_id "RvY_07687.2"; Scaffold003 rebuild transcript 3537765 3538019 . - . gene_id "RvY_07688"; transcript_id "RvY_07688.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3537765 3537849 . - . gene_id "RvY_07688"; transcript_id "RvY_07688.1"; Scaffold003 rebuild exon 3537919 3538019 . - . gene_id "RvY_07688"; transcript_id "RvY_07688.1"; Scaffold003 rebuild transcript 3538838 3539351 . - . gene_id "RvY_07689"; transcript_id "RvY_07689.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3538838 3538842 . - . gene_id "RvY_07689"; transcript_id "RvY_07689.1"; Scaffold003 rebuild exon 3539045 3539351 . - . gene_id "RvY_07689"; transcript_id "RvY_07689.1"; Scaffold003 rebuild transcript 3539765 3542443 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; gene_name "GNAO"; annotation "Guanine nucleotide-binding protein G(o) subunit alpha"; Pfam "[G-alpha] G-protein alpha subunit|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; KO "K04534"; similar_genes "GNAO_LOCMI(e-value:2.4e-139;bit-score:492.0)"; Scaffold003 rebuild exon 3539765 3539952 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3540030 3540078 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3540156 3540260 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3540374 3540503 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3540585 3540713 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3540894 3541057 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3541127 3541268 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3541823 3541865 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild exon 3542326 3542443 . - . gene_id "RvY_07690"; transcript_id "RvY_07690.1"; Scaffold003 rebuild transcript 3542495 3542680 . + . gene_id "RvY_07691"; transcript_id "RvY_07691.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3542495 3542680 . + . gene_id "RvY_07691"; transcript_id "RvY_07691.1"; Scaffold003 rebuild transcript 3545956 3551869 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; annotation "Wilms tumor protein 1-interacting protein homolog"; Pfam "[LIM]"; similar_genes "WTIP_DANRE(e-value:2.4e-65;bit-score:246.0)"; Scaffold003 rebuild exon 3545956 3546138 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3546206 3546274 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3546365 3546416 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3546573 3546703 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3546786 3546848 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3546955 3547022 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3547468 3547569 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3548895 3549459 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3549860 3550262 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3551292 3551644 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild exon 3551717 3551869 . - . gene_id "RvY_07692"; transcript_id "RvY_07692.1"; Scaffold003 rebuild transcript 3546446 3546637 . + . gene_id "RvY_07693"; transcript_id "RvY_07693.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3546446 3546637 . + . gene_id "RvY_07693"; transcript_id "RvY_07693.1"; Scaffold003 rebuild transcript 3552462 3552803 . - . gene_id "RvY_07694"; transcript_id "RvY_07694.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3552462 3552803 . - . gene_id "RvY_07694"; transcript_id "RvY_07694.1"; Scaffold003 rebuild transcript 3553957 3556042 . - . gene_id "RvY_07695"; transcript_id "RvY_07695.1"; annotation "hypothetical protein."; Pfam "[DUF4206]"; similar_genes "DEFI8_CAEEL(e-value:1.3e-06;bit-score:51.0)"; Scaffold003 rebuild exon 3553957 3554173 . - . gene_id "RvY_07695"; transcript_id "RvY_07695.1"; Scaffold003 rebuild exon 3554366 3554729 . - . gene_id "RvY_07695"; transcript_id "RvY_07695.1"; Scaffold003 rebuild exon 3554999 3555591 . - . gene_id "RvY_07695"; transcript_id "RvY_07695.1"; Scaffold003 rebuild exon 3555669 3555918 . - . gene_id "RvY_07695"; transcript_id "RvY_07695.1"; Scaffold003 rebuild exon 3556012 3556042 . - . gene_id "RvY_07695"; transcript_id "RvY_07695.1"; Scaffold003 rebuild transcript 3556135 3556446 . - . gene_id "RvY_07696"; transcript_id "RvY_07696.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3556135 3556446 . - . gene_id "RvY_07696"; transcript_id "RvY_07696.1"; Scaffold003 rebuild transcript 3556458 3557087 . - . gene_id "RvY_07697"; transcript_id "RvY_07697.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3556458 3557087 . - . gene_id "RvY_07697"; transcript_id "RvY_07697.1"; Scaffold003 rebuild transcript 3557468 3558201 . - . gene_id "RvY_07698"; transcript_id "RvY_07698.1"; gene_name "Sun"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Nol1_Nop2_Fmu] NOL1/NOP2/sun family|[Methyltransf_31] Methyltransferase domain"; CDD "tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]"; EC "EC2.1.1.-"; similar_genes "NSUN6_HUMAN(e-value:1.6e-11;bit-score:67.0)"; Scaffold003 rebuild exon 3557468 3558063 . - . gene_id "RvY_07698"; transcript_id "RvY_07698.1"; Scaffold003 rebuild exon 3558129 3558201 . - . gene_id "RvY_07698"; transcript_id "RvY_07698.1"; Scaffold003 rebuild transcript 3558430 3559283 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.1"; annotation "hypothetical protein."; Pfam "[PUA]"; Scaffold003 rebuild exon 3558430 3558481 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.1"; Scaffold003 rebuild exon 3558548 3558713 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.1"; Scaffold003 rebuild exon 3558822 3558973 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.1"; Scaffold003 rebuild exon 3559114 3559283 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.1"; Scaffold003 rebuild transcript 3558775 3559283 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.2"; annotation "hypothetical protein."; Pfam "[PUA]"; Scaffold003 rebuild exon 3558775 3558973 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.2"; Scaffold003 rebuild exon 3559114 3559283 . - . gene_id "RvY_07699"; transcript_id "RvY_07699.2"; Scaffold003 rebuild transcript 3560754 3562452 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; gene_name "mvaD"; annotation "Diphosphomevalonate decarboxylase"; Pfam "[GHMP_kinases_N] GHMP kinases N terminal domain"; CDD "diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase"; EC "EC4.1.1.33"; KO "K01597"; similar_genes "ERG19_MOUSE(e-value:2.1e-64;bit-score:243.0)"; Scaffold003 rebuild exon 3560754 3560841 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3560910 3561092 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3561162 3561293 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3561361 3561415 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3561500 3561644 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3561707 3562000 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3562078 3562221 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild exon 3562297 3562452 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.1"; Scaffold003 rebuild transcript 3560754 3562489 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; gene_name "mvaD"; annotation "Diphosphomevalonate decarboxylase"; Pfam "[GHMP_kinases_N] GHMP kinases N terminal domain"; CDD "diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase"; EC "EC4.1.1.33"; KO "K01597"; similar_genes "ERG19_MOUSE(e-value:2.1e-64;bit-score:243.0)"; Scaffold003 rebuild exon 3560754 3560841 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3560910 3561092 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3561162 3561293 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3561361 3561415 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3561500 3561644 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3561707 3562000 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3562078 3562221 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3562297 3562362 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild exon 3562445 3562489 . + . gene_id "RvY_07700"; transcript_id "RvY_07700.2"; Scaffold003 rebuild transcript 3562661 3563962 . - . gene_id "RvY_07701"; transcript_id "RvY_07701.1"; annotation "hypothetical protein."; Pfam "[Sad1_UNC] Sad1 / UNC-like C-terminal"; Scaffold003 rebuild exon 3562661 3562995 . - . gene_id "RvY_07701"; transcript_id "RvY_07701.1"; Scaffold003 rebuild exon 3563055 3563342 . - . gene_id "RvY_07701"; transcript_id "RvY_07701.1"; Scaffold003 rebuild exon 3563404 3563962 . - . gene_id "RvY_07701"; transcript_id "RvY_07701.1"; Scaffold003 rebuild transcript 3564317 3564775 . + . gene_id "RvY_07702"; transcript_id "RvY_07702.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3564317 3564775 . + . gene_id "RvY_07702"; transcript_id "RvY_07702.1"; Scaffold003 rebuild transcript 3564837 3566224 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; gene_name "MRP-like"; annotation "Cytosolic Fe-S cluster assembly factor nubp2"; Pfam "[MipZ] ATPase MipZ|[ArsA_ATPase] Anion-transporting ATPase|[ParA] ParA/MinD ATPase like|[AAA_31] AAA domain|[CbiA] CobQ/CobB/MinD/ParA nucleotide binding domain"; CDD "MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter."; similar_genes "NUBP2_XENLA(e-value:1.2e-81;bit-score:300.0)"; Scaffold003 rebuild exon 3564837 3565001 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild exon 3565127 3565215 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild exon 3565320 3565429 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild exon 3565505 3565659 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild exon 3565737 3565847 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild exon 3565945 3566014 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild exon 3566094 3566224 . + . gene_id "RvY_07703"; transcript_id "RvY_07703.1"; Scaffold003 rebuild transcript 3566989 3579242 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; annotation "putative Protein FAM38A"; Pfam "[DUF3595]"; similar_genes "FA38A_HUMAN(e-value:4.0e-46;bit-score:182.0)"; Scaffold003 rebuild exon 3566989 3567058 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3567237 3567332 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3567442 3567561 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3567654 3567696 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3567916 3568353 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3568626 3568896 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3569480 3569926 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3570062 3570370 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3570704 3570852 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3570955 3571267 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3571559 3571914 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3572177 3572523 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3572593 3572700 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3572760 3572928 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3573241 3573426 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3573616 3574136 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3574340 3574896 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3575174 3575631 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3575690 3575863 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3575932 3576410 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3576711 3577089 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3577156 3577314 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3577376 3578020 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3578296 3578748 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3578935 3579123 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild exon 3579185 3579242 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.1"; Scaffold003 rebuild transcript 3566989 3579242 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; annotation "putative Protein FAM38A"; Pfam "[DUF3595]"; similar_genes "FA38A_HUMAN(e-value:4.0e-46;bit-score:182.0)"; Scaffold003 rebuild exon 3566989 3567058 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3567237 3567332 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3567442 3567561 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3567654 3567696 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3567916 3568353 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3568626 3568782 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3568867 3568974 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3569480 3569926 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3570062 3570370 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3570704 3570852 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3570955 3571267 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3571559 3571914 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3572177 3572523 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3572593 3572700 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3572760 3572928 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3573241 3573426 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3573616 3574136 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3574340 3574896 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3575174 3575631 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3575690 3575863 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3575932 3576410 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3576711 3577089 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3577156 3577314 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3577376 3578020 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3578296 3578748 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3578935 3579123 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild exon 3579185 3579242 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.2"; Scaffold003 rebuild transcript 3566989 3579242 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; annotation "putative Protein FAM38A"; Pfam "[DUF3595]"; similar_genes "FA38A_HUMAN(e-value:4.0e-46;bit-score:182.0)"; Scaffold003 rebuild exon 3566989 3567058 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3567237 3567332 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3567442 3567561 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3567654 3567696 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3567916 3568353 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3568626 3568782 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3568867 3568896 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3569480 3569926 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3570062 3570370 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3570704 3570852 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3570955 3571267 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3571559 3571914 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3572177 3572523 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3572593 3572700 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3572760 3572928 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3573241 3573426 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3573616 3574136 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3574340 3574896 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3575174 3575631 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3575690 3575863 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3575932 3576410 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3576711 3577089 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3577156 3577314 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3577376 3578020 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3578296 3578748 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3578935 3579123 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild exon 3579185 3579242 . + . gene_id "RvY_07704"; transcript_id "RvY_07704.3"; Scaffold003 rebuild transcript 3579945 3582554 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3579945 3580150 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3580212 3580499 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3580691 3580789 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3580865 3581107 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3581168 3581245 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3581318 3581374 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3581573 3581957 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3582116 3582331 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild exon 3582387 3582554 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.1"; Scaffold003 rebuild transcript 3579872 3582554 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3579872 3579915 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3579995 3580150 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3580212 3580499 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3580691 3580789 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3580865 3581107 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3581318 3581374 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3581573 3581957 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3582116 3582331 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild exon 3582387 3582554 . - . gene_id "RvY_07705"; transcript_id "RvY_07705.2"; Scaffold003 rebuild transcript 3583241 3584233 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; gene_name "Clat_adaptor_s"; annotation "hypothetical protein."; Pfam "[Clat_adaptor_s] Clathrin adaptor complex small chain"; CDD "Clathrin adaptor complex small chain."; similar_genes "COPZ2_MOUSE(e-value:8.0e-13;bit-score:72.0)"; Scaffold003 rebuild exon 3583241 3583258 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; Scaffold003 rebuild exon 3583378 3583446 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; Scaffold003 rebuild exon 3583510 3583591 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; Scaffold003 rebuild exon 3583672 3583763 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; Scaffold003 rebuild exon 3583854 3583987 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; Scaffold003 rebuild exon 3584092 3584233 . + . gene_id "RvY_07706"; transcript_id "RvY_07706.1"; Scaffold003 rebuild transcript 3583725 3584445 . - . gene_id "RvY_07707"; transcript_id "RvY_07707.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3583725 3584018 . - . gene_id "RvY_07707"; transcript_id "RvY_07707.1"; Scaffold003 rebuild exon 3584371 3584445 . - . gene_id "RvY_07707"; transcript_id "RvY_07707.1"; Scaffold003 rebuild transcript 3584904 3585254 . + . gene_id "RvY_07708"; transcript_id "RvY_07708.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; Scaffold003 rebuild exon 3584904 3585254 . + . gene_id "RvY_07708"; transcript_id "RvY_07708.1"; Scaffold003 rebuild transcript 3586085 3588082 . - . gene_id "RvY_07709"; transcript_id "RvY_07709.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 3586085 3586786 . - . gene_id "RvY_07709"; transcript_id "RvY_07709.1"; Scaffold003 rebuild exon 3586913 3587077 . - . gene_id "RvY_07709"; transcript_id "RvY_07709.1"; Scaffold003 rebuild exon 3587189 3587700 . - . gene_id "RvY_07709"; transcript_id "RvY_07709.1"; Scaffold003 rebuild exon 3587776 3588082 . - . gene_id "RvY_07709"; transcript_id "RvY_07709.1"; Scaffold003 rebuild transcript 3589624 3591409 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3589624 3590017 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; Scaffold003 rebuild exon 3590222 3590575 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; Scaffold003 rebuild exon 3590655 3590810 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; Scaffold003 rebuild exon 3590878 3590997 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; Scaffold003 rebuild exon 3591074 3591191 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; Scaffold003 rebuild exon 3591271 3591409 . + . gene_id "RvY_07710"; transcript_id "RvY_07710.1"; Scaffold003 rebuild transcript 3591957 3593921 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; annotation "hypothetical protein."; Pfam "[FG-GAP] FG-GAP repeat"; Scaffold003 rebuild exon 3591957 3592076 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3592147 3592188 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3592246 3592302 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3592431 3592556 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3592635 3592749 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3592846 3592922 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3592991 3593348 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3593427 3593515 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3593587 3593755 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild exon 3593821 3593921 . + . gene_id "RvY_07711"; transcript_id "RvY_07711.1"; Scaffold003 rebuild transcript 3595182 3596661 . + . gene_id "RvY_07712"; transcript_id "RvY_07712.1"; gene_name "Aldo_ket_red"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; CDD "Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others."; Scaffold003 rebuild exon 3595182 3595478 . + . gene_id "RvY_07712"; transcript_id "RvY_07712.1"; Scaffold003 rebuild exon 3595797 3595943 . + . gene_id "RvY_07712"; transcript_id "RvY_07712.1"; Scaffold003 rebuild exon 3596026 3596432 . + . gene_id "RvY_07712"; transcript_id "RvY_07712.1"; Scaffold003 rebuild exon 3596502 3596661 . + . gene_id "RvY_07712"; transcript_id "RvY_07712.1"; Scaffold003 rebuild transcript 3597126 3602697 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; gene_name "K01469"; annotation "5-oxoprolinase"; Pfam "[Hydantoinase_B] Hydantoinase B/oxoprolinase|[Hydant_A_N] Hydantoinase/oxoprolinase N-terminal region|[Hydantoinase_A] Hydantoinase/oxoprolinase"; CDD "N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]"; EC "EC3.5.2.9"; KO "K01469"; similar_genes "OPLA_BOVIN(e-value:1.4e-101;bit-score:367.0)"; Scaffold003 rebuild exon 3597126 3597157 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3597241 3597369 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3597441 3597686 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3597761 3598327 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3598479 3598494 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3598562 3598969 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3599188 3599601 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3599773 3600416 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3600493 3600699 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3601057 3601125 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3601238 3601606 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3601860 3602388 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3602444 3602553 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild exon 3602631 3602697 . - . gene_id "RvY_07713"; transcript_id "RvY_07713.1"; Scaffold003 rebuild transcript 3604517 3605273 . - . gene_id "RvY_07714"; transcript_id "RvY_07714.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3604517 3604956 . - . gene_id "RvY_07714"; transcript_id "RvY_07714.1"; Scaffold003 rebuild exon 3605000 3605273 . - . gene_id "RvY_07714"; transcript_id "RvY_07714.1"; Scaffold003 rebuild transcript 3605482 3605733 . + . gene_id "RvY_07715"; transcript_id "RvY_07715.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3605482 3605733 . + . gene_id "RvY_07715"; transcript_id "RvY_07715.1"; Scaffold003 rebuild transcript 3606163 3606561 . + . gene_id "RvY_07716"; transcript_id "RvY_07716.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3606163 3606561 . + . gene_id "RvY_07716"; transcript_id "RvY_07716.1"; Scaffold003 rebuild transcript 3606920 3607180 . - . gene_id "RvY_07717"; transcript_id "RvY_07717.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold003 rebuild exon 3606920 3607180 . - . gene_id "RvY_07717"; transcript_id "RvY_07717.1"; Scaffold003 rebuild transcript 3608926 3610326 . - . gene_id "RvY_07718"; transcript_id "RvY_07718.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold003 rebuild exon 3608926 3609140 . - . gene_id "RvY_07718"; transcript_id "RvY_07718.1"; Scaffold003 rebuild exon 3609212 3609376 . - . gene_id "RvY_07718"; transcript_id "RvY_07718.1"; Scaffold003 rebuild exon 3609471 3609673 . - . gene_id "RvY_07718"; transcript_id "RvY_07718.1"; Scaffold003 rebuild exon 3609748 3609866 . - . gene_id "RvY_07718"; transcript_id "RvY_07718.1"; Scaffold003 rebuild exon 3609979 3610326 . - . gene_id "RvY_07718"; transcript_id "RvY_07718.1"; Scaffold003 rebuild transcript 3610902 3614824 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; gene_name "pckA"; annotation "Phosphoenolpyruvate carboxykinase, cytosolic [GTP]"; Pfam "[PEPCK] Phosphoenolpyruvate carboxykinase"; EC "EC4.1.1.32"; KO "K01596"; similar_genes "PCKGC_PONAB(e-value:5.1e-112;bit-score:401.0)"; Scaffold003 rebuild exon 3610902 3611107 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3611353 3611555 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3611656 3611797 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3611886 3612100 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3612168 3612261 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3612335 3612405 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3612526 3612632 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3612753 3612788 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3612864 3613051 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3613122 3613217 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3613278 3613385 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3613470 3613654 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3613729 3613925 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3613992 3614079 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild exon 3614751 3614824 . - . gene_id "RvY_07719"; transcript_id "RvY_07719.1"; Scaffold003 rebuild transcript 3615608 3617092 . + . gene_id "RvY_07720"; transcript_id "RvY_07720.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 3615608 3615891 . + . gene_id "RvY_07720"; transcript_id "RvY_07720.1"; Scaffold003 rebuild exon 3616516 3617092 . + . gene_id "RvY_07720"; transcript_id "RvY_07720.1"; Scaffold003 rebuild transcript 3619195 3621310 . + . gene_id "RvY_07721"; transcript_id "RvY_07721.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3619195 3619608 . + . gene_id "RvY_07721"; transcript_id "RvY_07721.1"; Scaffold003 rebuild exon 3619764 3620484 . + . gene_id "RvY_07721"; transcript_id "RvY_07721.1"; Scaffold003 rebuild exon 3620775 3621310 . + . gene_id "RvY_07721"; transcript_id "RvY_07721.1"; Scaffold003 rebuild transcript 3621897 3623723 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; gene_name "amidohydrolases"; annotation "hypothetical protein."; Pfam "[M20_dimer] Peptidase dimerisation domain|[Peptidase_M20] Peptidase family M20/M25/M40"; CDD "amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the Scaffold003 rebuild exon 3621897 3622231 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3622305 3622399 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3622460 3622596 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3622679 3622838 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3622909 3623037 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3623113 3623211 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3623349 3623495 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild exon 3623569 3623723 . + . gene_id "RvY_07722"; transcript_id "RvY_07722.1"; Scaffold003 rebuild transcript 3624149 3625850 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; gene_name "amidohydrolases"; annotation "hypothetical protein."; Pfam "[M20_dimer] Peptidase dimerisation domain|[Peptidase_M20] Peptidase family M20/M25/M40"; CDD "amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the Scaffold003 rebuild exon 3624149 3624468 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild exon 3624533 3624614 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild exon 3624713 3624862 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild exon 3624947 3624997 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild exon 3625077 3625314 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild exon 3625395 3625493 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild exon 3625567 3625850 . + . gene_id "RvY_07723"; transcript_id "RvY_07723.1"; Scaffold003 rebuild transcript 3626047 3627492 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; gene_name "punA"; annotation "putative Purine nucleoside phosphorylase"; Pfam "[PNP_UDP_1] Phosphorylase superfamily"; CDD "purine nucleoside phosphorylase; Provisional"; EC "EC2.4.2.1"; KO "K03783"; similar_genes "PNPH_HUMAN(e-value:1.2e-32;bit-score:137.0)"; Scaffold003 rebuild exon 3626047 3626249 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3626335 3626525 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3626594 3626701 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3626774 3626841 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3626917 3627026 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3627111 3627204 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3627278 3627353 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild exon 3627437 3627492 . - . gene_id "RvY_07724"; transcript_id "RvY_07724.1"; Scaffold003 rebuild transcript 3629399 3633612 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; annotation "hypothetical protein."; Pfam "[Alpha-mann_mid] Alpha mannosidase, middle domain|[Glyco_hydro_38C] Glycosyl hydrolases family 38 C-terminal domain|[Glyco_hydro_38] Glycosyl hydrolases family 38 N-terminal domain"; EC "EC3.2.1.114"; similar_genes "MA2A2_HUMAN(e-value:9.1e-12;bit-score:68.0)"; Scaffold003 rebuild exon 3629399 3629821 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild exon 3629927 3630014 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild exon 3630118 3630338 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild exon 3630417 3630468 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild exon 3630693 3631189 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild exon 3631425 3632533 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild exon 3632634 3633612 . + . gene_id "RvY_07725"; transcript_id "RvY_07725.1"; Scaffold003 rebuild transcript 3633914 3635034 . - . gene_id "RvY_07726"; transcript_id "RvY_07726.1"; gene_name "IPPase"; annotation "hypothetical protein."; Pfam "[Inositol_P] Inositol monophosphatase family"; CDD "IPPase; Inositol polyphosphate-1-phosphatase, a member of the Mg++ dependent family of inositol monophosphatase-like domains, hydrolyzes the 1' position phosphate from inositol 1,3,4-trisphosphate and inositol 1,4-bisphosphate. Members in this group may also exhibit 3'-phosphoadenosine 5'-phosphate phosphatase activity, and they all appear to be inhibited by lithium. IPPase is one of the proposed targets of Li+ therapy in manic-depressive illness."; EC "EC3.1.3.25"; KO "K15759"; similar_genes "IMPA3_XENTR(e-value:1.0e-12;bit-score:71.0)"; Scaffold003 rebuild exon 3633914 3634398 . - . gene_id "RvY_07726"; transcript_id "RvY_07726.1"; Scaffold003 rebuild exon 3634461 3635034 . - . gene_id "RvY_07726"; transcript_id "RvY_07726.1"; Scaffold003 rebuild transcript 3635360 3636621 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; gene_name "RBM4"; annotation "RNA-binding protein 4"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold003 rebuild exon 3635360 3635479 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; Scaffold003 rebuild exon 3635556 3635639 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; Scaffold003 rebuild exon 3635717 3635826 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; Scaffold003 rebuild exon 3635922 3636230 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; Scaffold003 rebuild exon 3636318 3636404 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; Scaffold003 rebuild exon 3636564 3636621 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.1"; Scaffold003 rebuild transcript 3635360 3637527 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; gene_name "RBM4"; annotation "RNA-binding protein 4"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold003 rebuild exon 3635360 3635479 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; Scaffold003 rebuild exon 3635556 3635639 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; Scaffold003 rebuild exon 3635717 3635826 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; Scaffold003 rebuild exon 3635922 3636230 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; Scaffold003 rebuild exon 3636318 3636404 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; Scaffold003 rebuild exon 3637503 3637527 . + . gene_id "RvY_07727"; transcript_id "RvY_07727.2"; Scaffold003 rebuild transcript 3637703 3638948 . - . gene_id "RvY_07728"; transcript_id "RvY_07728.1"; annotation "hypothetical protein."; Pfam "[Cadherin]"; Scaffold003 rebuild exon 3637703 3638193 . - . gene_id "RvY_07728"; transcript_id "RvY_07728.1"; Scaffold003 rebuild exon 3638444 3638948 . - . gene_id "RvY_07728"; transcript_id "RvY_07728.1"; Scaffold003 rebuild transcript 3640623 3641168 . - . gene_id "RvY_07729"; transcript_id "RvY_07729.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3640623 3641168 . - . gene_id "RvY_07729"; transcript_id "RvY_07729.1"; Scaffold003 rebuild transcript 3642280 3645060 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3642280 3642352 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3642460 3642765 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3643053 3643261 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3643373 3643447 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3643526 3643634 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3643721 3643831 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3643919 3644042 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3644135 3644247 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild exon 3644435 3645060 . + . gene_id "RvY_07730"; transcript_id "RvY_07730.1"; Scaffold003 rebuild transcript 3645206 3645460 . - . gene_id "RvY_07731"; transcript_id "RvY_07731.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3645206 3645460 . - . gene_id "RvY_07731"; transcript_id "RvY_07731.1"; Scaffold003 rebuild transcript 3646287 3648784 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; gene_name "ALDH_F7_AASADH"; annotation "Aldehyde dehydrogenase family 7 member A1"; Pfam "[Aldedh] Aldehyde dehydrogenase family"; CDD "NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC"; EC "EC1.2.1.3"; KO "K14085"; similar_genes "AL7A1_MALDO(e-value:8.7e-76;bit-score:281.0)"; Scaffold003 rebuild exon 3646287 3646771 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; Scaffold003 rebuild exon 3646859 3647007 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; Scaffold003 rebuild exon 3647219 3647570 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; Scaffold003 rebuild exon 3647892 3648284 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; Scaffold003 rebuild exon 3648476 3648525 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; Scaffold003 rebuild exon 3648585 3648784 . + . gene_id "RvY_07732"; transcript_id "RvY_07732.1"; Scaffold003 rebuild transcript 3649145 3651097 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; gene_name "TXNDC10"; annotation "thioredoxin domain-containing protein 10 [EC:5.3.4.1]"; Pfam "[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin]"; CDD "PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox Scaffold003 rebuild exon 3649145 3649300 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3649374 3649442 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3649538 3649721 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3649797 3650089 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3650170 3650356 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3650428 3650508 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3650587 3650762 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3650848 3650887 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild exon 3651009 3651097 . - . gene_id "RvY_07733"; transcript_id "RvY_07733.1"; Scaffold003 rebuild transcript 3651625 3654052 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; gene_name "p23_NUDC_like"; annotation "hypothetical protein."; Pfam "[CS]"; CDD "p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart."; similar_genes "NUDC1_DANRE(e-value:3.6e-15;bit-score:79.0)"; Scaffold003 rebuild exon 3651625 3651739 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3651850 3652007 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3652197 3652688 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3652755 3653041 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3653118 3653241 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3653322 3653441 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3653504 3653675 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild exon 3653769 3654052 . + . gene_id "RvY_07734"; transcript_id "RvY_07734.1"; Scaffold003 rebuild transcript 3654373 3658386 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; annotation "hypothetical protein."; Pfam "[RSN1_TM] Late exocytosis, associated with Golgi transport|[DUF221] Domain of unknown function DUF221"; Scaffold003 rebuild exon 3654373 3654501 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3654565 3654878 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3655074 3655236 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3655456 3655558 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3655633 3655779 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3655860 3655966 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3656078 3656216 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3656328 3656450 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3656522 3656652 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3656837 3656957 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3657061 3657141 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3657210 3657395 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3657475 3657679 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3657745 3657878 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3657968 3658059 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild exon 3658159 3658386 . - . gene_id "RvY_07735"; transcript_id "RvY_07735.1"; Scaffold003 rebuild transcript 3659197 3660759 . + . gene_id "RvY_07736"; transcript_id "RvY_07736.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold003 rebuild exon 3659197 3659473 . + . gene_id "RvY_07736"; transcript_id "RvY_07736.1"; Scaffold003 rebuild exon 3659627 3659882 . + . gene_id "RvY_07736"; transcript_id "RvY_07736.1"; Scaffold003 rebuild exon 3659984 3660285 . + . gene_id "RvY_07736"; transcript_id "RvY_07736.1"; Scaffold003 rebuild exon 3660347 3660481 . + . gene_id "RvY_07736"; transcript_id "RvY_07736.1"; Scaffold003 rebuild exon 3660539 3660759 . + . gene_id "RvY_07736"; transcript_id "RvY_07736.1"; Scaffold003 rebuild transcript 3659312 3660344 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3659312 3659483 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.1"; Scaffold003 rebuild exon 3659797 3660115 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.1"; Scaffold003 rebuild exon 3660218 3660344 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.1"; Scaffold003 rebuild transcript 3659312 3660234 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3659312 3659483 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.2"; Scaffold003 rebuild exon 3659797 3660111 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.2"; Scaffold003 rebuild exon 3660218 3660234 . - . gene_id "RvY_07737"; transcript_id "RvY_07737.2"; Scaffold003 rebuild transcript 3661372 3661713 . + . gene_id "RvY_07738"; transcript_id "RvY_07738.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3661372 3661713 . + . gene_id "RvY_07738"; transcript_id "RvY_07738.1"; Scaffold003 rebuild transcript 3661978 3663329 . + . gene_id "RvY_07739"; transcript_id "RvY_07739.1"; gene_name "H3"; annotation "hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; similar_genes "H3_VOLCA(e-value:3.6e-13;bit-score:73.0)"; Scaffold003 rebuild exon 3661978 3662284 . + . gene_id "RvY_07739"; transcript_id "RvY_07739.1"; Scaffold003 rebuild exon 3662410 3662544 . + . gene_id "RvY_07739"; transcript_id "RvY_07739.1"; Scaffold003 rebuild exon 3662788 3663329 . + . gene_id "RvY_07739"; transcript_id "RvY_07739.1"; Scaffold003 rebuild transcript 3664503 3666348 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold003 rebuild exon 3664503 3664689 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; Scaffold003 rebuild exon 3664790 3664942 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; Scaffold003 rebuild exon 3665017 3665127 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; Scaffold003 rebuild exon 3665214 3665515 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; Scaffold003 rebuild exon 3666033 3666191 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; Scaffold003 rebuild exon 3666265 3666348 . + . gene_id "RvY_07740"; transcript_id "RvY_07740.1"; Scaffold003 rebuild transcript 3666826 3668701 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; gene_name "COG5109"; annotation "hypothetical protein."; Pfam "[CLTH] CTLH/CRA C-terminal to LisH motif domain|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]"; similar_genes "RMD5A_XENLA(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 3666826 3666898 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3667003 3667184 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3667376 3667481 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3667548 3667713 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3667791 3668061 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3668122 3668259 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3668329 3668474 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild exon 3668542 3668701 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.1"; Scaffold003 rebuild transcript 3666826 3668701 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; gene_name "COG5109"; annotation "hypothetical protein."; Pfam "[CLTH] CTLH/CRA C-terminal to LisH motif domain|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]"; similar_genes "RMD5A_XENLA(e-value:2.4e-12;bit-score:70.0)"; Scaffold003 rebuild exon 3666826 3666898 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3667030 3667184 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3667376 3667481 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3667548 3667713 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3667791 3668061 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3668122 3668259 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3668329 3668474 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild exon 3668542 3668701 . - . gene_id "RvY_07741"; transcript_id "RvY_07741.2"; Scaffold003 rebuild transcript 3669393 3670711 . + . gene_id "RvY_07742"; transcript_id "RvY_07742.1"; gene_name "K06961"; annotation "KRR1 small subunit processome component homolog"; CDD "Predicted RNA-binding protein (contains KH domains) [General function prediction only]"; KO "K06961"; similar_genes "KRR1_BOVIN(e-value:9.8e-92;bit-score:334.0)"; Scaffold003 rebuild exon 3669393 3669593 . + . gene_id "RvY_07742"; transcript_id "RvY_07742.1"; Scaffold003 rebuild exon 3669661 3669921 . + . gene_id "RvY_07742"; transcript_id "RvY_07742.1"; Scaffold003 rebuild exon 3669994 3670134 . + . gene_id "RvY_07742"; transcript_id "RvY_07742.1"; Scaffold003 rebuild exon 3670231 3670401 . + . gene_id "RvY_07742"; transcript_id "RvY_07742.1"; Scaffold003 rebuild exon 3670631 3670711 . + . gene_id "RvY_07742"; transcript_id "RvY_07742.1"; Scaffold003 rebuild transcript 3671166 3672254 . + . gene_id "RvY_07743"; transcript_id "RvY_07743.1"; gene_name "PTZ00146"; annotation "hypothetical protein."; CDD "fibrillarin; Provisional"; similar_genes "K2C1_HUMAN(e-value:2.7e-11;bit-score:67.0)"; Scaffold003 rebuild exon 3671166 3671388 . + . gene_id "RvY_07743"; transcript_id "RvY_07743.1"; Scaffold003 rebuild exon 3671476 3671673 . + . gene_id "RvY_07743"; transcript_id "RvY_07743.1"; Scaffold003 rebuild exon 3671770 3672254 . + . gene_id "RvY_07743"; transcript_id "RvY_07743.1"; Scaffold003 rebuild transcript 3673275 3675849 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; gene_name "NR_DBD_DmE78_like"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of Drosophila ecdysone-induced protein 78 (E78) like is composed of two C4-type zinc fingers. DNA-binding domain of proteins similar to Drosophila ecdysone-induced protein 78 (E78) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. E78 interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. The SmE78 may be involved in transduction of an ecdysone signal in S. mansoni, consistent with its function in Drosophila. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, E78-like receptors have a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; Scaffold003 rebuild exon 3673275 3673388 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3673468 3673609 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3673670 3673795 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3673862 3673933 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3674024 3674141 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3674355 3674715 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3674779 3674920 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3675006 3675098 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3675183 3675278 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3675367 3675405 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3675494 3675612 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild exon 3675676 3675849 . + . gene_id "RvY_07744"; transcript_id "RvY_07744.1"; Scaffold003 rebuild transcript 3676508 3677104 . - . gene_id "RvY_07745"; transcript_id "RvY_07745.1"; gene_name "RALA"; annotation "Ras-related protein Ral-a"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; KO "K07834"; similar_genes "RALA_DROME(e-value:8.2e-51;bit-score:198.0)"; Scaffold003 rebuild exon 3676508 3677104 . - . gene_id "RvY_07745"; transcript_id "RvY_07745.1"; Scaffold003 rebuild transcript 3677815 3679641 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; gene_name "RP-L3"; annotation "large subunit ribosomal protein L3"; Pfam "[Ribosomal_L3] Ribosomal protein L3"; CDD "50S ribosomal protein L3, bacterial. This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here."; KO "K02906"; similar_genes "RM03_BOVIN(e-value:2.9e-21;bit-score:100.0)"; Scaffold003 rebuild exon 3677815 3678171 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3678236 3678313 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3678389 3678500 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3678560 3678720 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3678817 3678951 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3679026 3679116 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3679181 3679435 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild exon 3679523 3679641 . - . gene_id "RvY_07746"; transcript_id "RvY_07746.1"; Scaffold003 rebuild transcript 3679850 3680293 . + . gene_id "RvY_07747"; transcript_id "RvY_07747.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3679850 3680187 . + . gene_id "RvY_07747"; transcript_id "RvY_07747.1"; Scaffold003 rebuild exon 3680257 3680293 . + . gene_id "RvY_07747"; transcript_id "RvY_07747.1"; Scaffold003 rebuild transcript 3680304 3681876 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; gene_name "COG4886"; annotation "Ras suppressor protein 1"; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "RSU1_BOVIN(e-value:2.5e-71;bit-score:266.0)"; Scaffold003 rebuild exon 3680304 3680409 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3680516 3680566 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3680671 3680738 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3680808 3680860 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3680943 3681061 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3681123 3681205 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3681284 3681398 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3681479 3681582 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3681670 3681698 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild exon 3681789 3681876 . + . gene_id "RvY_07748"; transcript_id "RvY_07748.1"; Scaffold003 rebuild transcript 3682285 3684415 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; annotation "hypothetical protein."; Pfam "[Nop53] Nop53 (60S ribosomal biogenesis)"; KO "K14840"; similar_genes "GSCR2_HUMAN(e-value:4.7e-15;bit-score:79.0)"; Scaffold003 rebuild exon 3682285 3682348 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3682451 3682527 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3682608 3682674 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3682737 3682853 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3682908 3682963 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3683023 3683310 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3683389 3683543 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3683629 3683831 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3683931 3683997 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3684071 3684189 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild exon 3684279 3684415 . - . gene_id "RvY_07749"; transcript_id "RvY_07749.1"; Scaffold003 rebuild transcript 3684905 3685426 . - . gene_id "RvY_07750"; transcript_id "RvY_07750.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3684905 3685426 . - . gene_id "RvY_07750"; transcript_id "RvY_07750.1"; Scaffold003 rebuild transcript 3685542 3685856 . + . gene_id "RvY_07751"; transcript_id "RvY_07751.1"; annotation "hypothetical protein."; Pfam "[MMgT] Membrane magnesium transporter"; Scaffold003 rebuild exon 3685542 3685856 . + . gene_id "RvY_07751"; transcript_id "RvY_07751.1"; Scaffold003 rebuild transcript 3686384 3687680 . - . gene_id "RvY_07752"; transcript_id "RvY_07752.1"; gene_name "XPA"; annotation "putative DNA repair protein complementing XP-A cells"; Pfam "[XPA_C] XPA protein C-terminus|[XPA_N] XPA protein N-terminal"; CDD "DNA repair protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10847"; similar_genes "XPA_HUMAN(e-value:2.9e-38;bit-score:156.0)"; Scaffold003 rebuild exon 3686384 3686535 . - . gene_id "RvY_07752"; transcript_id "RvY_07752.1"; Scaffold003 rebuild exon 3686627 3686744 . - . gene_id "RvY_07752"; transcript_id "RvY_07752.1"; Scaffold003 rebuild exon 3686842 3687007 . - . gene_id "RvY_07752"; transcript_id "RvY_07752.1"; Scaffold003 rebuild exon 3687080 3687214 . - . gene_id "RvY_07752"; transcript_id "RvY_07752.1"; Scaffold003 rebuild exon 3687439 3687680 . - . gene_id "RvY_07752"; transcript_id "RvY_07752.1"; Scaffold003 rebuild transcript 3689364 3689920 . - . gene_id "RvY_07753"; transcript_id "RvY_07753.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3689364 3689638 . - . gene_id "RvY_07753"; transcript_id "RvY_07753.1"; Scaffold003 rebuild exon 3689728 3689920 . - . gene_id "RvY_07753"; transcript_id "RvY_07753.1"; Scaffold003 rebuild transcript 3691688 3693042 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.1"; gene_name "BioC"; annotation "Probable methyltransferase C20orf7 homolog, mitochondrial"; Pfam "[Methyltransf_31] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology."; EC "EC2.1.1.-"; similar_genes "CT007_DANRE(e-value:2.6e-75;bit-score:279.0)"; Scaffold003 rebuild exon 3691688 3692542 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.1"; Scaffold003 rebuild exon 3692604 3692863 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.1"; Scaffold003 rebuild exon 3693012 3693042 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.1"; Scaffold003 rebuild transcript 3691688 3692867 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.2"; gene_name "BioC"; annotation "Probable methyltransferase C20orf7 homolog, mitochondrial"; Pfam "[Methyltransf_31] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology."; EC "EC2.1.1.-"; similar_genes "CT007_DANRE(e-value:2.6e-75;bit-score:279.0)"; Scaffold003 rebuild exon 3691688 3692542 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.2"; Scaffold003 rebuild exon 3692604 3692867 . + . gene_id "RvY_07754"; transcript_id "RvY_07754.2"; Scaffold003 rebuild transcript 3692977 3693832 . - . gene_id "RvY_07755"; transcript_id "RvY_07755.1"; gene_name "Glycogen_syn"; annotation "putative Glycogen [starch] synthase, muscle"; Pfam "[Glycogen_syn] Glycogen synthase"; CDD "Glycogen synthase. This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P)."; EC "EC2.4.1.11"; similar_genes "GYS1_RAT(e-value:2.6e-41;bit-score:166.0)"; Scaffold003 rebuild exon 3692977 3693461 . - . gene_id "RvY_07755"; transcript_id "RvY_07755.1"; Scaffold003 rebuild exon 3693573 3693672 . - . gene_id "RvY_07755"; transcript_id "RvY_07755.1"; Scaffold003 rebuild exon 3693752 3693832 . - . gene_id "RvY_07755"; transcript_id "RvY_07755.1"; Scaffold003 rebuild transcript 3693576 3694277 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3693576 3693644 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.1"; Scaffold003 rebuild exon 3693713 3693874 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.1"; Scaffold003 rebuild exon 3693943 3694021 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.1"; Scaffold003 rebuild exon 3694108 3694277 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.1"; Scaffold003 rebuild transcript 3693576 3694741 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3693576 3693644 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.2"; Scaffold003 rebuild exon 3693713 3693874 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.2"; Scaffold003 rebuild exon 3693943 3694021 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.2"; Scaffold003 rebuild exon 3694614 3694741 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.2"; Scaffold003 rebuild transcript 3693576 3694122 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3693576 3693644 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.3"; Scaffold003 rebuild exon 3693713 3693874 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.3"; Scaffold003 rebuild exon 3693943 3694122 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.3"; Scaffold003 rebuild transcript 3693272 3693642 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3693272 3693452 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.4"; Scaffold003 rebuild exon 3693524 3693642 . + . gene_id "RvY_07756"; transcript_id "RvY_07756.4"; Scaffold003 rebuild transcript 3696242 3697730 . - . gene_id "RvY_07757"; transcript_id "RvY_07757.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "EC2.4.1.-"; KO "K14464"; similar_genes "FUCTC_DROME(e-value:1.8e-12;bit-score:70.0)"; Scaffold003 rebuild exon 3696242 3696686 . - . gene_id "RvY_07757"; transcript_id "RvY_07757.1"; Scaffold003 rebuild exon 3696907 3697730 . - . gene_id "RvY_07757"; transcript_id "RvY_07757.1"; Scaffold003 rebuild transcript 3699150 3699410 . + . gene_id "RvY_07758"; transcript_id "RvY_07758.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3699150 3699410 . + . gene_id "RvY_07758"; transcript_id "RvY_07758.1"; Scaffold003 rebuild transcript 3699738 3704093 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; annotation "hypothetical protein."; Pfam "[Alpha-mann_mid] Alpha mannosidase, middle domain|[Glyco_hydro_38C] Glycosyl hydrolases family 38 C-terminal domain|[Glyco_hydro_38] Glycosyl hydrolases family 38 N-terminal domain"; EC "EC3.2.1.114"; similar_genes "MA2A1_RAT(e-value:7.9e-11;bit-score:65.0)"; Scaffold003 rebuild exon 3699738 3700307 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3700555 3701175 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3701429 3701916 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3701991 3702334 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3702415 3702841 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3703058 3703135 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3703217 3703568 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild exon 3703632 3704093 . - . gene_id "RvY_07759"; transcript_id "RvY_07759.1"; Scaffold003 rebuild transcript 3706580 3707319 . + . gene_id "RvY_07760"; transcript_id "RvY_07760.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3706580 3706846 . + . gene_id "RvY_07760"; transcript_id "RvY_07760.1"; Scaffold003 rebuild exon 3706906 3707097 . + . gene_id "RvY_07760"; transcript_id "RvY_07760.1"; Scaffold003 rebuild exon 3707203 3707319 . + . gene_id "RvY_07760"; transcript_id "RvY_07760.1"; Scaffold003 rebuild transcript 3707651 3712267 . - . gene_id "RvY_07761"; transcript_id "RvY_07761.1"; gene_name "GAL3ST1"; annotation "galactosylceramide sulfotransferase [EC:2.8.2.11]"; Pfam "[Gal-3-0_sulfotr] Galactose-3-O-sulfotransferase"; EC "EC2.8.2.11"; KO "K01019"; similar_genes "G3ST1_MOUSE(e-value:2.6e-09;bit-score:60.0)"; Scaffold003 rebuild exon 3707651 3708392 . - . gene_id "RvY_07761"; transcript_id "RvY_07761.1"; Scaffold003 rebuild exon 3708821 3709222 . - . gene_id "RvY_07761"; transcript_id "RvY_07761.1"; Scaffold003 rebuild exon 3712131 3712267 . - . gene_id "RvY_07761"; transcript_id "RvY_07761.1"; Scaffold003 rebuild transcript 3710147 3710326 . + . gene_id "RvY_07762"; transcript_id "RvY_07762.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3710147 3710326 . + . gene_id "RvY_07762"; transcript_id "RvY_07762.1"; Scaffold003 rebuild transcript 3714121 3715124 . - . gene_id "RvY_07763"; transcript_id "RvY_07763.1"; gene_name "msrA"; annotation "peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]"; Pfam "[PMSR] Peptide methionine sulfoxide reductase"; CDD "methionine sulfoxide reductase A; Provisional"; EC "EC1.8.4.11"; KO "K07304"; similar_genes "MSRA_LEIXX(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 3714121 3714355 . - . gene_id "RvY_07763"; transcript_id "RvY_07763.1"; Scaffold003 rebuild exon 3714440 3714691 . - . gene_id "RvY_07763"; transcript_id "RvY_07763.1"; Scaffold003 rebuild exon 3714769 3714956 . - . gene_id "RvY_07763"; transcript_id "RvY_07763.1"; Scaffold003 rebuild exon 3715074 3715124 . - . gene_id "RvY_07763"; transcript_id "RvY_07763.1"; Scaffold003 rebuild transcript 3716462 3722060 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1)[Kazal_2] Kazal-type serine protease inhibitor domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(1)[Kazal_1] Kazal-type serine protease inhibitor domain|[Ig_3] Immunoglobulin domain"; similar_genes "(1)FSTL5_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold003 rebuild exon 3716462 3716866 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3717054 3717126 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3717202 3717517 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3717749 3718195 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3719069 3719266 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3719332 3719484 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3719642 3719762 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3719883 3719992 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3720175 3720373 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3721864 3721985 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild exon 3722060 3722060 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.1"; Scaffold003 rebuild transcript 3715799 3719078 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|(1)[Kazal_2] Kazal-type serine protease inhibitor domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(1)[Kazal_1] Kazal-type serine protease inhibitor domain|[Ig_3] Immunoglobulin domain"; similar_genes "(1)FSTL5_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold003 rebuild exon 3715799 3716033 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild exon 3716089 3716428 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild exon 3716500 3716866 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild exon 3717054 3717126 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild exon 3717202 3717517 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild exon 3717749 3718195 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild exon 3719069 3719078 . - . gene_id "RvY_07764"; transcript_id "RvY_07764.2"; Scaffold003 rebuild transcript 3724344 3725828 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; Scaffold003 rebuild exon 3724344 3724611 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; Scaffold003 rebuild exon 3724676 3724816 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; Scaffold003 rebuild exon 3724899 3725003 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; Scaffold003 rebuild exon 3725065 3725327 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; Scaffold003 rebuild exon 3725385 3725500 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; Scaffold003 rebuild exon 3725576 3725828 . + . gene_id "RvY_07765"; transcript_id "RvY_07765.1"; Scaffold003 rebuild transcript 3725879 3728142 . - . gene_id "RvY_07766"; transcript_id "RvY_07766.1"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[BING4CT] BING4CT (NUC141) domain"; KO "K14768"; similar_genes "UTP7_YEAST(e-value:3.8e-23;bit-score:106.0)"; Scaffold003 rebuild exon 3725879 3726347 . - . gene_id "RvY_07766"; transcript_id "RvY_07766.1"; Scaffold003 rebuild exon 3726505 3727015 . - . gene_id "RvY_07766"; transcript_id "RvY_07766.1"; Scaffold003 rebuild exon 3727239 3728142 . - . gene_id "RvY_07766"; transcript_id "RvY_07766.1"; Scaffold003 rebuild transcript 3729142 3731181 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[CAP_GLY] CAP-Gly domain|[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold003 rebuild exon 3729142 3729247 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild exon 3729328 3729412 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild exon 3729484 3729651 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild exon 3729737 3730192 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild exon 3730266 3730395 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild exon 3730460 3730609 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild exon 3730738 3731181 . + . gene_id "RvY_07767"; transcript_id "RvY_07767.1"; Scaffold003 rebuild transcript 3732354 3733502 . + . gene_id "RvY_07768"; transcript_id "RvY_07768.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3732354 3733502 . + . gene_id "RvY_07768"; transcript_id "RvY_07768.1"; Scaffold003 rebuild transcript 3733823 3735284 . + . gene_id "RvY_07769"; transcript_id "RvY_07769.1"; gene_name "DM10"; annotation "hypothetical protein."; Pfam "[DUF1126] Repeat of unknown function (DUF1126)"; CDD "Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases."; Scaffold003 rebuild exon 3733823 3733864 . + . gene_id "RvY_07769"; transcript_id "RvY_07769.1"; Scaffold003 rebuild exon 3733940 3734155 . + . gene_id "RvY_07769"; transcript_id "RvY_07769.1"; Scaffold003 rebuild exon 3734357 3734425 . + . gene_id "RvY_07769"; transcript_id "RvY_07769.1"; Scaffold003 rebuild exon 3734505 3734780 . + . gene_id "RvY_07769"; transcript_id "RvY_07769.1"; Scaffold003 rebuild exon 3734988 3735284 . + . gene_id "RvY_07769"; transcript_id "RvY_07769.1"; Scaffold003 rebuild transcript 3735365 3736201 . + . gene_id "RvY_07770"; transcript_id "RvY_07770.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3735365 3735418 . + . gene_id "RvY_07770"; transcript_id "RvY_07770.1"; Scaffold003 rebuild exon 3735506 3735641 . + . gene_id "RvY_07770"; transcript_id "RvY_07770.1"; Scaffold003 rebuild exon 3735720 3735882 . + . gene_id "RvY_07770"; transcript_id "RvY_07770.1"; Scaffold003 rebuild exon 3735961 3736201 . + . gene_id "RvY_07770"; transcript_id "RvY_07770.1"; Scaffold003 rebuild transcript 3736432 3737422 . + . gene_id "RvY_07771"; transcript_id "RvY_07771.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3736432 3736607 . + . gene_id "RvY_07771"; transcript_id "RvY_07771.1"; Scaffold003 rebuild exon 3736855 3737248 . + . gene_id "RvY_07771"; transcript_id "RvY_07771.1"; Scaffold003 rebuild exon 3737321 3737422 . + . gene_id "RvY_07771"; transcript_id "RvY_07771.1"; Scaffold003 rebuild transcript 3738766 3739059 . - . gene_id "RvY_07772"; transcript_id "RvY_07772.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3738766 3739059 . - . gene_id "RvY_07772"; transcript_id "RvY_07772.1"; Scaffold003 rebuild transcript 3740704 3741098 . + . gene_id "RvY_07773"; transcript_id "RvY_07773.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3740704 3740883 . + . gene_id "RvY_07773"; transcript_id "RvY_07773.1"; Scaffold003 rebuild exon 3740952 3741098 . + . gene_id "RvY_07773"; transcript_id "RvY_07773.1"; Scaffold003 rebuild transcript 3741323 3743607 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; gene_name "K01510"; annotation "apyrase [EC:3.6.1.5]"; Pfam "[GDA1_CD39] GDA1/CD39 (nucleoside phosphatase) family"; CDD "GDA1/CD39 (nucleoside phosphatase) family."; EC "EC3.6.1.5"; KO "K01510"; Scaffold003 rebuild exon 3741323 3741421 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; Scaffold003 rebuild exon 3741511 3741663 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; Scaffold003 rebuild exon 3741790 3741921 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; Scaffold003 rebuild exon 3742153 3742852 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; Scaffold003 rebuild exon 3743131 3743278 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; Scaffold003 rebuild exon 3743346 3743607 . - . gene_id "RvY_07774"; transcript_id "RvY_07774.1"; Scaffold003 rebuild transcript 3745470 3748925 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3745470 3745506 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.1"; Scaffold003 rebuild exon 3745784 3745853 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.1"; Scaffold003 rebuild exon 3746111 3747451 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.1"; Scaffold003 rebuild exon 3748823 3748925 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.1"; Scaffold003 rebuild transcript 3745470 3747455 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3745470 3745506 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.2"; Scaffold003 rebuild exon 3745784 3745853 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.2"; Scaffold003 rebuild exon 3746111 3747455 . + . gene_id "RvY_07775"; transcript_id "RvY_07775.2"; Scaffold003 rebuild transcript 3750152 3750430 . + . gene_id "RvY_07776"; transcript_id "RvY_07776.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3750152 3750430 . + . gene_id "RvY_07776"; transcript_id "RvY_07776.1"; Scaffold003 rebuild transcript 3751308 3751841 . + . gene_id "RvY_07777"; transcript_id "RvY_07777.1"; annotation "hypothetical protein."; similar_genes "FIP1_DEBHA(e-value:1.3e-08;bit-score:58.0)"; Scaffold003 rebuild exon 3751308 3751841 . + . gene_id "RvY_07777"; transcript_id "RvY_07777.1"; Scaffold003 rebuild transcript 3752374 3753898 . + . gene_id "RvY_07778"; transcript_id "RvY_07778.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3752374 3753429 . + . gene_id "RvY_07778"; transcript_id "RvY_07778.1"; Scaffold003 rebuild exon 3753491 3753898 . + . gene_id "RvY_07778"; transcript_id "RvY_07778.1"; Scaffold003 rebuild transcript 3752580 3754549 . - . gene_id "RvY_07779"; transcript_id "RvY_07779.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3752580 3752617 . - . gene_id "RvY_07779"; transcript_id "RvY_07779.1"; Scaffold003 rebuild exon 3752786 3752878 . - . gene_id "RvY_07779"; transcript_id "RvY_07779.1"; Scaffold003 rebuild exon 3753065 3753200 . - . gene_id "RvY_07779"; transcript_id "RvY_07779.1"; Scaffold003 rebuild exon 3753286 3753410 . - . gene_id "RvY_07779"; transcript_id "RvY_07779.1"; Scaffold003 rebuild exon 3754489 3754549 . - . gene_id "RvY_07779"; transcript_id "RvY_07779.1"; Scaffold003 rebuild transcript 3754468 3754740 . + . gene_id "RvY_07780"; transcript_id "RvY_07780.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3754468 3754740 . + . gene_id "RvY_07780"; transcript_id "RvY_07780.1"; Scaffold003 rebuild transcript 3756802 3757029 . - . gene_id "RvY_07781"; transcript_id "RvY_07781.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3756802 3757029 . - . gene_id "RvY_07781"; transcript_id "RvY_07781.1"; Scaffold003 rebuild transcript 3758008 3759275 . + . gene_id "RvY_07782"; transcript_id "RvY_07782.1"; gene_name "LHPP"; annotation "putative Phospholysine phosphohistidine inorganic pyrophosphate phosphatase"; Pfam "[Hydrolase_6] Haloacid dehalogenase-like hydrolase|[HAD_2] Haloacid dehalogenase-like hydrolase|[Hydrolase_like] HAD-hyrolase-like|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a ""phospholysine phosphohistidine inorganic pyrophosphatase,"" probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published."; EC "EC3.1.3.-|EC3.6.1.1"; KO "K11725"; similar_genes "LHPP_HUMAN(e-value:3.4e-41;bit-score:166.0)"; Scaffold003 rebuild exon 3758008 3758383 . + . gene_id "RvY_07782"; transcript_id "RvY_07782.1"; Scaffold003 rebuild exon 3758499 3758649 . + . gene_id "RvY_07782"; transcript_id "RvY_07782.1"; Scaffold003 rebuild exon 3758978 3759275 . + . gene_id "RvY_07782"; transcript_id "RvY_07782.1"; Scaffold003 rebuild transcript 3759714 3760217 . + . gene_id "RvY_07783"; transcript_id "RvY_07783.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3759714 3759765 . + . gene_id "RvY_07783"; transcript_id "RvY_07783.1"; Scaffold003 rebuild exon 3759851 3759969 . + . gene_id "RvY_07783"; transcript_id "RvY_07783.1"; Scaffold003 rebuild exon 3760029 3760073 . + . gene_id "RvY_07783"; transcript_id "RvY_07783.1"; Scaffold003 rebuild exon 3760143 3760217 . + . gene_id "RvY_07783"; transcript_id "RvY_07783.1"; Scaffold003 rebuild transcript 3760370 3762222 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; gene_name "(1)Cyt_C5_DNA_methylase(2)DNMT"; annotation "(1)hypothetical protein.(2)DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]"; Pfam "[DNA_methylase] C-5 cytosine-specific DNA methylase"; CDD "Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability."; EC "(1)EC2.1.1.29(2)EC2.1.1.29|EC2.1.1.37"; KO "(1)K15336(2)K00558"; similar_genes "TRDMT_BOVIN(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 3760370 3760476 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3760585 3760717 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3760785 3760842 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3760936 3761264 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3761344 3761455 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3761551 3761622 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3761746 3761813 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3761897 3762045 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild exon 3762144 3762222 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.1"; Scaffold003 rebuild transcript 3760523 3762222 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; gene_name "(1)Cyt_C5_DNA_methylase(2)DNMT"; annotation "(1)hypothetical protein.(2)DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]"; Pfam "[DNA_methylase] C-5 cytosine-specific DNA methylase"; CDD "Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability."; EC "(1)EC2.1.1.29(2)EC2.1.1.29|EC2.1.1.37"; KO "(1)K15336(2)K00558"; similar_genes "TRDMT_BOVIN(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 3760523 3760717 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3760785 3760842 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3760936 3761264 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3761344 3761455 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3761551 3761622 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3761746 3761813 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3761897 3762045 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild exon 3762144 3762222 . - . gene_id "RvY_07784"; transcript_id "RvY_07784.2"; Scaffold003 rebuild transcript 3765822 3766433 . - . gene_id "RvY_07785"; transcript_id "RvY_07785.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3765822 3766433 . - . gene_id "RvY_07785"; transcript_id "RvY_07785.1"; Scaffold003 framed transcript 3766804 3767562 . - . gene_id "RvY_07786"; transcript_id "RvY_07786.1"; annotation "hypothetical protein."; Scaffold003 framed exon 3766804 3766921 . - . gene_id "RvY_07786"; transcript_id "RvY_07786.1"; Scaffold003 framed exon 3767179 3767248 . - . gene_id "RvY_07786"; transcript_id "RvY_07786.1"; Scaffold003 framed exon 3767526 3767562 . - . gene_id "RvY_07786"; transcript_id "RvY_07786.1"; Scaffold003 rebuild transcript 3768282 3770505 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; gene_name "RNF14"; annotation "E3 ubiquitin-protein ligase RNF14 [EC:6.3.2.19]"; Pfam "[IBR]|[RWD]"; CDD "In Between Ring fingers. the domains occurs between pairs og RING fingers"; EC "EC6.3.2.19"; KO "K11971"; Scaffold003 rebuild exon 3768282 3768551 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild exon 3768626 3768793 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild exon 3768866 3769318 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild exon 3769384 3769612 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild exon 3769679 3769824 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild exon 3769951 3769984 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild exon 3770201 3770505 . + . gene_id "RvY_07787"; transcript_id "RvY_07787.1"; Scaffold003 rebuild transcript 3772429 3774926 . + . gene_id "RvY_07788"; transcript_id "RvY_07788.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3772429 3772595 . + . gene_id "RvY_07788"; transcript_id "RvY_07788.1"; Scaffold003 rebuild exon 3772938 3773550 . + . gene_id "RvY_07788"; transcript_id "RvY_07788.1"; Scaffold003 rebuild exon 3773860 3774245 . + . gene_id "RvY_07788"; transcript_id "RvY_07788.1"; Scaffold003 rebuild exon 3774452 3774926 . + . gene_id "RvY_07788"; transcript_id "RvY_07788.1"; Scaffold003 rebuild transcript 3775529 3778937 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold003 rebuild exon 3775529 3776040 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild exon 3776299 3777053 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild exon 3777185 3777477 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild exon 3777740 3778039 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild exon 3778162 3778234 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild exon 3778319 3778752 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild exon 3778893 3778937 . - . gene_id "RvY_07789"; transcript_id "RvY_07789.1"; Scaffold003 rebuild transcript 3780277 3780954 . - . gene_id "RvY_07790"; transcript_id "RvY_07790.1"; gene_name "RabGEF"; annotation "hypothetical protein."; Pfam "[Mss4] Mss4 protein"; CDD "Nucleotide exchange factor for Rab-like small GTPases (RabGEF), Mss4 type; RabGEF positely regulates the function of Rab GTPase by promoting exchange of GDP for GTP; members of the Rab subfamily of Ras GTPases are important in vesicular transport;"; similar_genes "MSS4_MOUSE(e-value:2.7e-13;bit-score:73.0)"; Scaffold003 rebuild exon 3780277 3780606 . - . gene_id "RvY_07790"; transcript_id "RvY_07790.1"; Scaffold003 rebuild exon 3780748 3780954 . - . gene_id "RvY_07790"; transcript_id "RvY_07790.1"; Scaffold003 rebuild transcript 3781896 3783711 . + . gene_id "RvY_07791"; transcript_id "RvY_07791.1"; annotation "hypothetical protein."; Pfam "[OTU] OTU-like cysteine protease"; Scaffold003 rebuild exon 3781896 3782034 . + . gene_id "RvY_07791"; transcript_id "RvY_07791.1"; Scaffold003 rebuild exon 3782110 3782222 . + . gene_id "RvY_07791"; transcript_id "RvY_07791.1"; Scaffold003 rebuild exon 3782469 3783194 . + . gene_id "RvY_07791"; transcript_id "RvY_07791.1"; Scaffold003 rebuild exon 3783616 3783711 . + . gene_id "RvY_07791"; transcript_id "RvY_07791.1"; Scaffold003 rebuild transcript 3784114 3786184 . - . gene_id "RvY_07792"; transcript_id "RvY_07792.1"; gene_name "K00993"; annotation "ethanolaminephosphotransferase [EC:2.7.8.1]"; Pfam "[CDP-OH_P_transf] CDP-alcohol phosphatidyltransferase"; CDD "sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]"; EC "EC2.7.8.1"; KO "K00993"; similar_genes "SELI_BOVIN(e-value:2.4e-14;bit-score:77.0)"; Scaffold003 rebuild exon 3784114 3784750 . - . gene_id "RvY_07792"; transcript_id "RvY_07792.1"; Scaffold003 rebuild exon 3785041 3785409 . - . gene_id "RvY_07792"; transcript_id "RvY_07792.1"; Scaffold003 rebuild exon 3785705 3785976 . - . gene_id "RvY_07792"; transcript_id "RvY_07792.1"; Scaffold003 rebuild exon 3786089 3786184 . - . gene_id "RvY_07792"; transcript_id "RvY_07792.1"; Scaffold003 rebuild transcript 3787348 3788008 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3787348 3787472 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.1"; Scaffold003 rebuild exon 3787568 3787793 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.1"; Scaffold003 rebuild exon 3787879 3787924 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.1"; Scaffold003 rebuild exon 3787998 3788008 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.1"; Scaffold003 rebuild transcript 3787348 3787905 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3787348 3787472 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.2"; Scaffold003 rebuild exon 3787568 3787793 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.2"; Scaffold003 rebuild exon 3787879 3787905 . - . gene_id "RvY_07793"; transcript_id "RvY_07793.2"; Scaffold003 rebuild transcript 3788480 3788929 . - . gene_id "RvY_07794"; transcript_id "RvY_07794.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3788480 3788929 . - . gene_id "RvY_07794"; transcript_id "RvY_07794.1"; Scaffold003 rebuild transcript 3789082 3790180 . + . gene_id "RvY_07795"; transcript_id "RvY_07795.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3789082 3789196 . + . gene_id "RvY_07795"; transcript_id "RvY_07795.1"; Scaffold003 rebuild exon 3789266 3789445 . + . gene_id "RvY_07795"; transcript_id "RvY_07795.1"; Scaffold003 rebuild exon 3789507 3789554 . + . gene_id "RvY_07795"; transcript_id "RvY_07795.1"; Scaffold003 rebuild exon 3790056 3790180 . + . gene_id "RvY_07795"; transcript_id "RvY_07795.1"; Scaffold003 rebuild transcript 3791164 3795881 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 3791164 3791276 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3791354 3791421 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3791500 3791583 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3791655 3792026 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3792326 3792814 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3793101 3793184 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3793245 3793554 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3793759 3794176 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3794460 3794868 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3794949 3795025 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3795103 3795261 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3795330 3795397 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3795475 3795725 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild exon 3795817 3795881 . - . gene_id "RvY_07796"; transcript_id "RvY_07796.1"; Scaffold003 rebuild transcript 3796675 3798150 . - . gene_id "RvY_07797"; transcript_id "RvY_07797.1"; gene_name "COG4642"; annotation "hypothetical protein."; Pfam "[MORN] MORN repeat"; CDD "Uncharacterized protein conserved in bacteria [Function unknown]"; Scaffold003 rebuild exon 3796675 3797327 . - . gene_id "RvY_07797"; transcript_id "RvY_07797.1"; Scaffold003 rebuild exon 3797425 3797584 . - . gene_id "RvY_07797"; transcript_id "RvY_07797.1"; Scaffold003 rebuild exon 3797728 3798150 . - . gene_id "RvY_07797"; transcript_id "RvY_07797.1"; Scaffold003 rebuild transcript 3798534 3801790 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; gene_name "KLHL19"; annotation "kelch-like protein 19"; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[BTB] BTB/POZ domain|[Kelch_5] Kelch motif|[BACK] BTB And C-terminal Kelch|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; KO "K10456"; similar_genes "KEAP1_RAT(e-value:8.6e-23;bit-score:105.0)"; Scaffold003 rebuild exon 3798534 3798859 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild exon 3798929 3799134 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild exon 3799556 3799784 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild exon 3799981 3800344 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild exon 3800595 3800828 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild exon 3800900 3801330 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild exon 3801481 3801790 . - . gene_id "RvY_07798"; transcript_id "RvY_07798.1"; Scaffold003 rebuild transcript 3802733 3803403 . - . gene_id "RvY_07799"; transcript_id "RvY_07799.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3802733 3802911 . - . gene_id "RvY_07799"; transcript_id "RvY_07799.1"; Scaffold003 rebuild exon 3803012 3803056 . - . gene_id "RvY_07799"; transcript_id "RvY_07799.1"; Scaffold003 rebuild exon 3803280 3803403 . - . gene_id "RvY_07799"; transcript_id "RvY_07799.1"; Scaffold003 rebuild transcript 3804084 3805375 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; gene_name "DERL1"; annotation "putative Derlin-1"; Pfam "[DER1] Der1-like family"; CDD "Der1-like family. The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.)."; KO "K11519"; similar_genes "DERL1_PONAB(e-value:1.1e-48;bit-score:191.0)"; Scaffold003 rebuild exon 3804084 3804136 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild exon 3804232 3804337 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild exon 3804421 3804532 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild exon 3804602 3804693 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild exon 3804767 3804822 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild exon 3804937 3805029 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild exon 3805126 3805375 . + . gene_id "RvY_07800"; transcript_id "RvY_07800.1"; Scaffold003 rebuild transcript 3806505 3811662 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; annotation "hypothetical protein."; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; similar_genes "UBP53_MOUSE(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 3806505 3806983 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild exon 3807258 3807911 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild exon 3808290 3808912 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild exon 3809278 3809609 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild exon 3810236 3810370 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild exon 3811027 3811235 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild exon 3811599 3811662 . - . gene_id "RvY_07801"; transcript_id "RvY_07801.1"; Scaffold003 rebuild transcript 3815354 3816562 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; gene_name "(1)K00432"; annotation "(1)glutathione peroxidase [EC:1.11.1.9](2)hypothetical protein."; Pfam "[AhpC-TSA] AhpC/TSA family|[GSHPx] Glutathione peroxidase"; CDD "(1)Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes."; EC "(1)EC1.11.1.9"; KO "(1)K00432"; similar_genes "(1)GPX7_ARATH(e-value:1.9e-22;bit-score:104.0)"; Scaffold003 rebuild exon 3815354 3815500 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild exon 3815578 3815678 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild exon 3815846 3815900 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild exon 3815986 3816044 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild exon 3816119 3816149 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild exon 3816231 3816425 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild exon 3816494 3816562 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.1"; Scaffold003 rebuild transcript 3815077 3815594 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.2"; gene_name "(1)K00432"; annotation "(1)glutathione peroxidase [EC:1.11.1.9](2)hypothetical protein."; Pfam "[AhpC-TSA] AhpC/TSA family|[GSHPx] Glutathione peroxidase"; CDD "(1)Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes."; EC "(1)EC1.11.1.9"; KO "(1)K00432"; similar_genes "(1)GPX7_ARATH(e-value:1.9e-22;bit-score:104.0)"; Scaffold003 rebuild exon 3815077 3815500 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.2"; Scaffold003 rebuild exon 3815578 3815594 . + . gene_id "RvY_07802"; transcript_id "RvY_07802.2"; Scaffold003 rebuild transcript 3816913 3817689 . - . gene_id "RvY_07803"; transcript_id "RvY_07803.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2_6] C2H2-type zinc finger"; Scaffold003 rebuild exon 3816913 3817689 . - . gene_id "RvY_07803"; transcript_id "RvY_07803.1"; Scaffold003 rebuild transcript 3818228 3818536 . + . gene_id "RvY_07804"; transcript_id "RvY_07804.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3818228 3818536 . + . gene_id "RvY_07804"; transcript_id "RvY_07804.1"; Scaffold003 rebuild transcript 3819287 3820001 . + . gene_id "RvY_07805"; transcript_id "RvY_07805.1"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; Scaffold003 rebuild exon 3819287 3819371 . + . gene_id "RvY_07805"; transcript_id "RvY_07805.1"; Scaffold003 rebuild exon 3819445 3819767 . + . gene_id "RvY_07805"; transcript_id "RvY_07805.1"; Scaffold003 rebuild exon 3819876 3820001 . + . gene_id "RvY_07805"; transcript_id "RvY_07805.1"; Scaffold003 rebuild transcript 3820740 3821383 . + . gene_id "RvY_07806"; transcript_id "RvY_07806.1"; annotation "hypothetical protein."; Pfam "[Thyroglobulin_1] Thyroglobulin type-1 repeat"; Scaffold003 rebuild exon 3820740 3820806 . + . gene_id "RvY_07806"; transcript_id "RvY_07806.1"; Scaffold003 rebuild exon 3820890 3821383 . + . gene_id "RvY_07806"; transcript_id "RvY_07806.1"; Scaffold003 rebuild transcript 3821924 3822250 . + . gene_id "RvY_07807"; transcript_id "RvY_07807.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3821924 3822250 . + . gene_id "RvY_07807"; transcript_id "RvY_07807.1"; Scaffold003 rebuild transcript 3822633 3823034 . + . gene_id "RvY_07808"; transcript_id "RvY_07808.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3822633 3823034 . + . gene_id "RvY_07808"; transcript_id "RvY_07808.1"; Scaffold003 rebuild transcript 3824968 3827937 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; gene_name "LMNB"; annotation "lamin B"; Pfam "[Filament] Intermediate filament protein|[LTD] Lamin Tail Domain"; KO "K07611"; Scaffold003 rebuild exon 3824968 3825348 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3825420 3825533 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3825601 3825796 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3826041 3826558 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3826792 3826941 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3827009 3827141 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3827220 3827383 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild exon 3827635 3827937 . - . gene_id "RvY_07809"; transcript_id "RvY_07809.1"; Scaffold003 rebuild transcript 3825146 3825391 . + . gene_id "RvY_07810"; transcript_id "RvY_07810.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3825146 3825391 . + . gene_id "RvY_07810"; transcript_id "RvY_07810.1"; Scaffold003 rebuild transcript 3830369 3832372 . - . gene_id "RvY_07811"; transcript_id "RvY_07811.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_31] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Rsm22] Mitochondrial small ribosomal subunit Rsm22"; EC "EC2.1.1.-"; similar_genes "M11D1_MOUSE(e-value:7.8e-09;bit-score:58.0)"; Scaffold003 rebuild exon 3830369 3830944 . - . gene_id "RvY_07811"; transcript_id "RvY_07811.1"; Scaffold003 rebuild exon 3831006 3831293 . - . gene_id "RvY_07811"; transcript_id "RvY_07811.1"; Scaffold003 rebuild exon 3831368 3831810 . - . gene_id "RvY_07811"; transcript_id "RvY_07811.1"; Scaffold003 rebuild exon 3831947 3832078 . - . gene_id "RvY_07811"; transcript_id "RvY_07811.1"; Scaffold003 rebuild exon 3832141 3832372 . - . gene_id "RvY_07811"; transcript_id "RvY_07811.1"; Scaffold003 rebuild transcript 3833447 3834681 . + . gene_id "RvY_07812"; transcript_id "RvY_07812.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 3833447 3833607 . + . gene_id "RvY_07812"; transcript_id "RvY_07812.1"; Scaffold003 rebuild exon 3833667 3834333 . + . gene_id "RvY_07812"; transcript_id "RvY_07812.1"; Scaffold003 rebuild exon 3834673 3834681 . + . gene_id "RvY_07812"; transcript_id "RvY_07812.1"; Scaffold003 rebuild transcript 3834746 3837924 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; gene_name "sss"; annotation "Sodium/glucose cotransporter 4"; Pfam "[SSF] Sodium:solute symporter family"; CDD "SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; KO "K14383"; similar_genes "SC5A9_HUMAN(e-value:4.9e-72;bit-score:268.0)"; Scaffold003 rebuild exon 3834746 3834826 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3834932 3835003 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3835081 3835156 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3835257 3835285 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3835392 3835451 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3835517 3835621 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3835724 3835910 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3835995 3836209 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3836273 3836408 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3836496 3836974 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3837152 3837712 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild exon 3837778 3837924 . + . gene_id "RvY_07813"; transcript_id "RvY_07813.1"; Scaffold003 rebuild transcript 3839256 3842022 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; gene_name "Peptidase_C19D"; annotation "hypothetical protein."; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; Scaffold003 rebuild exon 3839256 3839484 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3839587 3839739 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3839823 3839953 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3840026 3840143 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3840201 3840323 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3840410 3840566 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3840640 3840799 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3840868 3841046 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3841106 3841198 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3841277 3841393 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3841524 3841665 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild exon 3841735 3842022 . - . gene_id "RvY_07814"; transcript_id "RvY_07814.1"; Scaffold003 rebuild transcript 3843418 3843690 . - . gene_id "RvY_07815"; transcript_id "RvY_07815.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3843418 3843690 . - . gene_id "RvY_07815"; transcript_id "RvY_07815.1"; Scaffold003 rebuild transcript 3844730 3848834 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; gene_name "PH_melted"; annotation "hypothetical protein."; Pfam "[PH]"; CDD "Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes."; similar_genes "MELT_DROME(e-value:1.3e-08;bit-score:58.0)"; Scaffold003 rebuild exon 3844730 3844831 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3844920 3845171 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3845234 3845408 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3845485 3845648 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3845732 3845941 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3846003 3846235 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3846443 3846777 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3846863 3846956 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3847068 3847309 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3847372 3847467 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3847714 3847853 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3847954 3848159 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3848222 3848291 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3848362 3848454 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3848520 3848680 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild exon 3848771 3848834 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.1"; Scaffold003 rebuild transcript 3844730 3848475 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; gene_name "PH_melted"; annotation "hypothetical protein."; Pfam "[PH]"; CDD "Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes."; similar_genes "MELT_DROME(e-value:1.3e-08;bit-score:58.0)"; Scaffold003 rebuild exon 3844730 3844831 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3844920 3845171 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3845234 3845408 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3845485 3845648 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3845732 3845941 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3846003 3846235 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3846443 3846777 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3846863 3846956 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3847068 3847309 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3847372 3847467 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3847714 3847853 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3847954 3848159 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3848222 3848291 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild exon 3848362 3848475 . + . gene_id "RvY_07816"; transcript_id "RvY_07816.2"; Scaffold003 rebuild transcript 3849111 3854713 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[AAA_23] AAA domain"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; similar_genes "SMC6_XENLA(e-value:4.6e-11;bit-score:66.0)"; Scaffold003 rebuild exon 3849111 3849201 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3849267 3849367 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3849446 3849778 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3850037 3850270 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3850353 3850490 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3850651 3850873 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3850957 3851133 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3851367 3851482 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3851567 3851737 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3851843 3851866 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3852074 3852258 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3852335 3852519 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3852591 3852758 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3852940 3853028 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3853108 3853254 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3853315 3853533 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3853609 3853710 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3853785 3853865 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3853953 3854014 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3854104 3854246 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3854369 3854474 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild exon 3854575 3854713 . - . gene_id "RvY_07817"; transcript_id "RvY_07817.1"; Scaffold003 rebuild transcript 3855387 3857002 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3855387 3855536 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.1"; Scaffold003 rebuild exon 3855650 3855799 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.1"; Scaffold003 rebuild exon 3856727 3857002 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.1"; Scaffold003 rebuild transcript 3855387 3857447 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3855387 3855536 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.2"; Scaffold003 rebuild exon 3855650 3855799 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.2"; Scaffold003 rebuild exon 3856727 3856983 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.2"; Scaffold003 rebuild exon 3857432 3857447 . + . gene_id "RvY_07818"; transcript_id "RvY_07818.2"; Scaffold003 rebuild transcript 3857633 3858749 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3857633 3857707 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.1"; Scaffold003 rebuild exon 3857805 3858390 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.1"; Scaffold003 rebuild exon 3858455 3858477 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.1"; Scaffold003 rebuild exon 3858570 3858597 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.1"; Scaffold003 rebuild exon 3858676 3858749 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.1"; Scaffold003 rebuild transcript 3857633 3858925 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3857633 3857707 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild exon 3857805 3858390 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild exon 3858455 3858477 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild exon 3858570 3858597 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild exon 3858676 3858701 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild exon 3858796 3858829 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild exon 3858912 3858925 . + . gene_id "RvY_07819"; transcript_id "RvY_07819.2"; Scaffold003 rebuild transcript 3859036 3859482 . - . gene_id "RvY_07820"; transcript_id "RvY_07820.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3859036 3859482 . - . gene_id "RvY_07820"; transcript_id "RvY_07820.1"; Scaffold003 rebuild transcript 3859720 3861486 . + . gene_id "RvY_07821"; transcript_id "RvY_07821.1"; gene_name "MFAP1"; annotation "Microfibrillar-associated protein 1"; Pfam "[Prp19_bind] Splicing factor, Prp19-binding domain"; CDD "Micro-fibrillar-associated protein 1 C-terminus. This family represents the C-terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix."; KO "K13110"; similar_genes "MFAP1_CHICK(e-value:2.9e-55;bit-score:213.0)"; Scaffold003 rebuild exon 3859720 3859835 . + . gene_id "RvY_07821"; transcript_id "RvY_07821.1"; Scaffold003 rebuild exon 3859979 3860300 . + . gene_id "RvY_07821"; transcript_id "RvY_07821.1"; Scaffold003 rebuild exon 3860434 3860609 . + . gene_id "RvY_07821"; transcript_id "RvY_07821.1"; Scaffold003 rebuild exon 3860677 3860964 . + . gene_id "RvY_07821"; transcript_id "RvY_07821.1"; Scaffold003 rebuild exon 3861057 3861486 . + . gene_id "RvY_07821"; transcript_id "RvY_07821.1"; Scaffold003 rebuild transcript 3861621 3863071 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; gene_name "gcp"; annotation "Probable O-sialoglycoprotein endopeptidase"; Pfam "[Peptidase_M22] Glycoprotease family"; CDD "O-sialoglycoprotein endopeptidase; Provisional"; EC "EC3.4.24.57"; KO "K01409"; similar_genes "OSGEP_BOVIN(e-value:4.2e-139;bit-score:491.0)"; Scaffold003 rebuild exon 3861621 3861928 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; Scaffold003 rebuild exon 3861989 3862313 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; Scaffold003 rebuild exon 3862403 3862476 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; Scaffold003 rebuild exon 3862581 3862682 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; Scaffold003 rebuild exon 3862762 3862881 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; Scaffold003 rebuild exon 3862957 3863071 . - . gene_id "RvY_07822"; transcript_id "RvY_07822.1"; Scaffold003 rebuild transcript 3864856 3867409 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; gene_name "SET"; annotation "PR domain zinc finger protein 1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-met] Zinc-finger of C2H2 type|[zf-C2H2_4] C2H2-type zinc finger"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; similar_genes "PRDM1_HUMAN(e-value:2.1e-66;bit-score:250.0)"; Scaffold003 rebuild exon 3864856 3865026 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild exon 3865174 3865293 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild exon 3865422 3865680 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild exon 3865763 3866622 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild exon 3866704 3866761 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild exon 3866884 3866982 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild exon 3867057 3867409 . + . gene_id "RvY_07823"; transcript_id "RvY_07823.1"; Scaffold003 rebuild transcript 3867425 3867727 . + . gene_id "RvY_07824"; transcript_id "RvY_07824.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3867425 3867727 . + . gene_id "RvY_07824"; transcript_id "RvY_07824.1"; Scaffold003 rebuild transcript 3867869 3873012 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; gene_name "ACAA2"; annotation "3-ketoacyl-CoA thiolase, mitochondrial"; Pfam "[Thiolase_C] Thiolase, C-terminal domain|[Thiolase_N] Thiolase, N-terminal domain"; CDD "acetyl-CoA acetyltransferase; Provisional"; EC "EC2.3.1.16"; KO "K07508"; similar_genes "THIM_BOVIN(e-value:2.9e-74;bit-score:276.0)"; Scaffold003 rebuild exon 3867869 3867953 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3868024 3868178 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3868276 3868373 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3868457 3868559 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3868650 3869031 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3869428 3869690 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3869772 3869857 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild exon 3872970 3873012 . - . gene_id "RvY_07825"; transcript_id "RvY_07825.1"; Scaffold003 rebuild transcript 3870552 3871633 . + . gene_id "RvY_07826"; transcript_id "RvY_07826.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3870552 3870827 . + . gene_id "RvY_07826"; transcript_id "RvY_07826.1"; Scaffold003 rebuild exon 3870929 3871162 . + . gene_id "RvY_07826"; transcript_id "RvY_07826.1"; Scaffold003 rebuild exon 3871229 3871633 . + . gene_id "RvY_07826"; transcript_id "RvY_07826.1"; Scaffold003 rebuild transcript 3871772 3871942 . + . gene_id "RvY_07827"; transcript_id "RvY_07827.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3871772 3871942 . + . gene_id "RvY_07827"; transcript_id "RvY_07827.1"; Scaffold003 rebuild transcript 3873380 3875062 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; gene_name "K06971"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[BtpA] BtpA family"; CDD "Predicted TIM-barrel enzyme [General function prediction only]"; KO "K06971"; similar_genes "YSMU_CAEEL(e-value:3.3e-22;bit-score:103.0)"; Scaffold003 rebuild exon 3873380 3873559 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3873650 3873723 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3873826 3873939 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3874013 3874059 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3874162 3874264 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3874424 3874551 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3874674 3874793 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild exon 3874932 3875062 . + . gene_id "RvY_07828"; transcript_id "RvY_07828.1"; Scaffold003 rebuild transcript 3875774 3876916 . - . gene_id "RvY_07829"; transcript_id "RvY_07829.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3875774 3876354 . - . gene_id "RvY_07829"; transcript_id "RvY_07829.1"; Scaffold003 rebuild exon 3876628 3876916 . - . gene_id "RvY_07829"; transcript_id "RvY_07829.1"; Scaffold003 rebuild transcript 3878987 3879759 . - . gene_id "RvY_07830"; transcript_id "RvY_07830.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3878987 3879048 . - . gene_id "RvY_07830"; transcript_id "RvY_07830.1"; Scaffold003 rebuild exon 3879143 3879203 . - . gene_id "RvY_07830"; transcript_id "RvY_07830.1"; Scaffold003 rebuild exon 3879374 3879552 . - . gene_id "RvY_07830"; transcript_id "RvY_07830.1"; Scaffold003 rebuild exon 3879615 3879759 . - . gene_id "RvY_07830"; transcript_id "RvY_07830.1"; Scaffold003 rebuild transcript 3880093 3880739 . - . gene_id "RvY_07831"; transcript_id "RvY_07831.1"; gene_name "(1)DDO(2)thiamin_ThiO"; annotation "(1)D-aspartate oxidase [EC:1.4.3.1](2)hypothetical protein."; Pfam "[DAO] FAD dependent oxidoreductase"; CDD "glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein."; EC "(1)EC1.4.3.1"; KO "(1)K00272"; Scaffold003 rebuild exon 3880093 3880302 . - . gene_id "RvY_07831"; transcript_id "RvY_07831.1"; Scaffold003 rebuild exon 3880383 3880739 . - . gene_id "RvY_07831"; transcript_id "RvY_07831.1"; Scaffold003 rebuild transcript 3880350 3880739 . - . gene_id "RvY_07831"; transcript_id "RvY_07831.2"; gene_name "(1)DDO(2)thiamin_ThiO"; annotation "(1)D-aspartate oxidase [EC:1.4.3.1](2)hypothetical protein."; Pfam "[DAO] FAD dependent oxidoreductase"; CDD "glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein."; EC "(1)EC1.4.3.1"; KO "(1)K00272"; Scaffold003 rebuild exon 3880350 3880739 . - . gene_id "RvY_07831"; transcript_id "RvY_07831.2"; Scaffold003 rebuild transcript 3881043 3881399 . + . gene_id "RvY_07832"; transcript_id "RvY_07832.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3881043 3881399 . + . gene_id "RvY_07832"; transcript_id "RvY_07832.1"; Scaffold003 rebuild transcript 3882109 3882282 . - . gene_id "RvY_07833"; transcript_id "RvY_07833.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3882109 3882282 . - . gene_id "RvY_07833"; transcript_id "RvY_07833.1"; Scaffold003 rebuild transcript 3882146 3885966 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; gene_name "AmtB"; annotation "hypothetical protein."; Pfam "[Ammonium_transp] Ammonium Transporter Family"; CDD "Ammonia permease [Inorganic ion transport and metabolism]"; similar_genes "AMT3_SCHPO(e-value:1.6e-15;bit-score:81.0)"; Scaffold003 rebuild exon 3882146 3882290 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3882355 3882417 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3883411 3883521 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3883646 3883754 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3883900 3884084 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3884176 3884254 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3884326 3884377 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3884623 3884692 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3884786 3884896 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3884972 3885184 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3885295 3885338 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3885401 3885433 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3885503 3885625 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild exon 3885706 3885966 . + . gene_id "RvY_07834"; transcript_id "RvY_07834.1"; Scaffold003 rebuild transcript 3886425 3888620 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 3886425 3886512 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3886582 3886605 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3886804 3886835 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3886959 3887025 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3887275 3887299 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3887380 3887458 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3887562 3888326 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild exon 3888522 3888620 . - . gene_id "RvY_07835"; transcript_id "RvY_07835.1"; Scaffold003 rebuild transcript 3890805 3891635 . + . gene_id "RvY_07836"; transcript_id "RvY_07836.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "DAN4_YEAST(e-value:2.9e-23;bit-score:106.0)"; Scaffold003 rebuild exon 3890805 3891635 . + . gene_id "RvY_07836"; transcript_id "RvY_07836.1"; Scaffold003 rebuild transcript 3890882 3891340 . - . gene_id "RvY_07837"; transcript_id "RvY_07837.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3890882 3891340 . - . gene_id "RvY_07837"; transcript_id "RvY_07837.1"; Scaffold003 rebuild transcript 3892186 3892993 . + . gene_id "RvY_07838"; transcript_id "RvY_07838.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold003 rebuild exon 3892186 3892441 . + . gene_id "RvY_07838"; transcript_id "RvY_07838.1"; Scaffold003 rebuild exon 3892503 3892673 . + . gene_id "RvY_07838"; transcript_id "RvY_07838.1"; Scaffold003 rebuild exon 3892860 3892993 . + . gene_id "RvY_07838"; transcript_id "RvY_07838.1"; Scaffold003 rebuild transcript 3893199 3893628 . + . gene_id "RvY_07839"; transcript_id "RvY_07839.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3893199 3893295 . + . gene_id "RvY_07839"; transcript_id "RvY_07839.1"; Scaffold003 rebuild exon 3893366 3893628 . + . gene_id "RvY_07839"; transcript_id "RvY_07839.1"; Scaffold003 rebuild transcript 3893671 3896571 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold003 rebuild exon 3893671 3893797 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3894071 3894168 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3894242 3894383 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3894463 3894714 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3894832 3895111 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3895401 3895774 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3895848 3896031 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3896118 3896270 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild exon 3896343 3896571 . + . gene_id "RvY_07840"; transcript_id "RvY_07840.1"; Scaffold003 rebuild transcript 3897465 3897833 . + . gene_id "RvY_07841"; transcript_id "RvY_07841.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3897465 3897833 . + . gene_id "RvY_07841"; transcript_id "RvY_07841.1"; Scaffold003 rebuild transcript 3898451 3906094 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; gene_name "POLS"; annotation "putative PAP-associated domain-containing protein 5"; Pfam "[PAP_assoc] Cid1 family poly A polymerase|[NTP_transf_2] Nucleotidyltransferase domain"; CDD "DNA polymerase sigma [DNA replication, recombination, and repair]"; EC "EC2.7.7.-|EC2.7.7.7"; KO "K03514"; similar_genes "PAPD5_MOUSE(e-value:6.1e-30;bit-score:129.0)"; Scaffold003 rebuild exon 3898451 3898710 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3898966 3899431 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3899739 3900003 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3900083 3900224 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3900394 3900638 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3900707 3900882 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3901151 3901363 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3901582 3901705 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3905195 3905414 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild exon 3905776 3906094 . - . gene_id "RvY_07842"; transcript_id "RvY_07842.1"; Scaffold003 rebuild transcript 3907740 3909423 . + . gene_id "RvY_07843"; transcript_id "RvY_07843.1"; gene_name "UAS"; annotation "hypothetical protein."; Pfam "[Thioredoxin_7] Thioredoxin-like"; CDD "UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), which is involved in the ubiquitin-proteosome pathway. Some members of this family are uncharacterized proteins containing only a UAS domain."; Scaffold003 rebuild exon 3907740 3908152 . + . gene_id "RvY_07843"; transcript_id "RvY_07843.1"; Scaffold003 rebuild exon 3908214 3908481 . + . gene_id "RvY_07843"; transcript_id "RvY_07843.1"; Scaffold003 rebuild exon 3908671 3909423 . + . gene_id "RvY_07843"; transcript_id "RvY_07843.1"; Scaffold003 rebuild transcript 3909889 3911242 . + . gene_id "RvY_07844"; transcript_id "RvY_07844.1"; gene_name "DDO"; annotation "D-aspartate oxidase [EC:1.4.3.1]"; Pfam "[DAO] FAD dependent oxidoreductase"; EC "EC1.4.3.1|EC1.4.3.3"; KO "K00272"; similar_genes "OXDA_MOUSE(e-value:5.9e-09;bit-score:59.0)"; Scaffold003 rebuild exon 3909889 3909969 . + . gene_id "RvY_07844"; transcript_id "RvY_07844.1"; Scaffold003 rebuild exon 3910065 3910254 . + . gene_id "RvY_07844"; transcript_id "RvY_07844.1"; Scaffold003 rebuild exon 3910428 3910951 . + . gene_id "RvY_07844"; transcript_id "RvY_07844.1"; Scaffold003 rebuild exon 3911015 3911242 . + . gene_id "RvY_07844"; transcript_id "RvY_07844.1"; Scaffold003 rebuild transcript 3911525 3915379 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; gene_name "SPRY"; annotation "RING finger and SPRY domain-containing protein 1"; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[SPRY]"; CDD "Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues."; similar_genes "RSPRY_PONAB(e-value:1.2e-64;bit-score:244.0)"; Scaffold003 rebuild exon 3911525 3911851 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3912115 3912313 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3912739 3912763 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3912851 3912911 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3913071 3913266 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3913569 3913785 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3913862 3914026 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3914572 3914821 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3914937 3914943 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild exon 3915111 3915379 . - . gene_id "RvY_07845"; transcript_id "RvY_07845.1"; Scaffold003 rebuild transcript 3916527 3917581 . - . gene_id "RvY_07846"; transcript_id "RvY_07846.1"; annotation "hypothetical protein."; Pfam "[Lamp] Lysosome-associated membrane glycoprotein (Lamp)"; Scaffold003 rebuild exon 3916527 3917083 . - . gene_id "RvY_07846"; transcript_id "RvY_07846.1"; Scaffold003 rebuild exon 3917545 3917581 . - . gene_id "RvY_07846"; transcript_id "RvY_07846.1"; Scaffold003 rebuild transcript 3918058 3922238 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.1"; gene_name "LAMP1_2"; annotation "lysosomal-associated membrane protein 1/2"; Pfam "[Lamp] Lysosome-associated membrane glycoprotein (Lamp)"; KO "K06528"; similar_genes "LMP1_CAEEL(e-value:2.6e-07;bit-score:53.0)"; Scaffold003 rebuild exon 3918058 3918270 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.1"; Scaffold003 rebuild exon 3918537 3918937 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.1"; Scaffold003 rebuild exon 3919142 3919415 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.1"; Scaffold003 rebuild exon 3919550 3919991 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.1"; Scaffold003 rebuild exon 3922180 3922238 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.1"; Scaffold003 rebuild transcript 3918058 3922238 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; gene_name "LAMP1_2"; annotation "lysosomal-associated membrane protein 1/2"; Pfam "[Lamp] Lysosome-associated membrane glycoprotein (Lamp)"; KO "K06528"; similar_genes "LMP1_CAEEL(e-value:2.6e-07;bit-score:53.0)"; Scaffold003 rebuild exon 3918058 3918270 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; Scaffold003 rebuild exon 3918537 3918937 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; Scaffold003 rebuild exon 3919142 3919415 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; Scaffold003 rebuild exon 3919550 3919991 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; Scaffold003 rebuild exon 3920363 3921076 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; Scaffold003 rebuild exon 3922180 3922238 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.2"; Scaffold003 rebuild transcript 3918058 3922238 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; gene_name "LAMP1_2"; annotation "lysosomal-associated membrane protein 1/2"; Pfam "[Lamp] Lysosome-associated membrane glycoprotein (Lamp)"; KO "K06528"; similar_genes "LMP1_CAEEL(e-value:2.6e-07;bit-score:53.0)"; Scaffold003 rebuild exon 3918058 3918270 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; Scaffold003 rebuild exon 3918537 3918937 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; Scaffold003 rebuild exon 3919142 3919415 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; Scaffold003 rebuild exon 3919550 3919991 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; Scaffold003 rebuild exon 3920363 3921073 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; Scaffold003 rebuild exon 3922180 3922238 . - . gene_id "RvY_07847"; transcript_id "RvY_07847.3"; Scaffold003 rebuild transcript 3923654 3927249 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; gene_name "TFIID3"; annotation "transcription initiation factor TFIID subunit D3"; Pfam "[TAFH] NHR1 homology to TAF|[TAF4] Transcription initiation factor TFIID component TAF4 family"; KO "K03129"; similar_genes "TAF4B_HUMAN(e-value:3.1e-12;bit-score:70.0)"; Scaffold003 rebuild exon 3923654 3923770 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3923851 3924018 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3924077 3924133 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3924190 3924315 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3924383 3924513 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3924581 3924777 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3925082 3925422 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3925626 3925796 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3926025 3926114 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3926223 3926573 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3926637 3926834 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild exon 3927058 3927249 . - . gene_id "RvY_07848"; transcript_id "RvY_07848.1"; Scaffold003 rebuild transcript 3928178 3931138 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; gene_name "LSm14_N"; annotation "hypothetical protein."; Pfam "[FDF]|[LSM14] Scd6-like Sm domain"; CDD "LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles."; similar_genes "LS14A_BOVIN(e-value:1.4e-18;bit-score:91.0)"; Scaffold003 rebuild exon 3928178 3928316 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3928520 3928692 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3928841 3928892 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3928967 3929191 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3929317 3929430 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3929541 3929697 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3929951 3930276 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild exon 3930819 3931138 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.1"; Scaffold003 rebuild transcript 3928178 3930293 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; gene_name "LSm14_N"; annotation "hypothetical protein."; Pfam "[FDF]|[LSM14] Scd6-like Sm domain"; CDD "LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles."; similar_genes "LS14A_BOVIN(e-value:1.4e-18;bit-score:91.0)"; Scaffold003 rebuild exon 3928178 3928316 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild exon 3928520 3928692 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild exon 3928841 3928892 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild exon 3928967 3929191 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild exon 3929317 3929430 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild exon 3929541 3929697 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild exon 3929951 3930293 . + . gene_id "RvY_07849"; transcript_id "RvY_07849.2"; Scaffold003 rebuild transcript 3931422 3933146 . - . gene_id "RvY_07850"; transcript_id "RvY_07850.1"; annotation "hypothetical protein."; Pfam "[K_tetra] K+ channel tetramerisation domain"; similar_genes "KC15L_DANRE(e-value:4.4e-24;bit-score:109.0)"; Scaffold003 rebuild exon 3931422 3932130 . - . gene_id "RvY_07850"; transcript_id "RvY_07850.1"; Scaffold003 rebuild exon 3932660 3932720 . - . gene_id "RvY_07850"; transcript_id "RvY_07850.1"; Scaffold003 rebuild exon 3932885 3933146 . - . gene_id "RvY_07850"; transcript_id "RvY_07850.1"; Scaffold003 rebuild transcript 3934710 3937566 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; gene_name "PKMYT"; annotation "membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K06633"; similar_genes "PMY13_CAEBR(e-value:7.8e-09;bit-score:58.0)"; Scaffold003 rebuild exon 3934710 3934934 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3934997 3935181 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3935404 3935578 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3935637 3935770 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3935834 3935940 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3935999 3936084 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3936153 3936275 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3936337 3936412 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3936477 3936706 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3936796 3936893 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3937145 3937304 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild exon 3937372 3937566 . - . gene_id "RvY_07851"; transcript_id "RvY_07851.1"; Scaffold003 rebuild transcript 3938261 3939033 . + . gene_id "RvY_07852"; transcript_id "RvY_07852.1"; gene_name "K06875"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[dsDNA_bind] Double-stranded DNA-binding domain"; KO "K06875"; similar_genes "PDCD5_MOUSE(e-value:6.6e-23;bit-score:105.0)"; Scaffold003 rebuild exon 3938261 3938323 . + . gene_id "RvY_07852"; transcript_id "RvY_07852.1"; Scaffold003 rebuild exon 3938473 3938614 . + . gene_id "RvY_07852"; transcript_id "RvY_07852.1"; Scaffold003 rebuild exon 3938718 3938881 . + . gene_id "RvY_07852"; transcript_id "RvY_07852.1"; Scaffold003 rebuild exon 3938980 3939033 . + . gene_id "RvY_07852"; transcript_id "RvY_07852.1"; Scaffold003 rebuild transcript 3939667 3942398 . - . gene_id "RvY_07853"; transcript_id "RvY_07853.1"; gene_name "ELMO1"; annotation "engulfment and cell motility protein 1"; Pfam "[ELMO_CED12] ELMO/CED-12 family|[DUF3361]"; KO "K12366"; Scaffold003 rebuild exon 3939667 3940395 . - . gene_id "RvY_07853"; transcript_id "RvY_07853.1"; Scaffold003 rebuild exon 3940600 3941496 . - . gene_id "RvY_07853"; transcript_id "RvY_07853.1"; Scaffold003 rebuild exon 3941737 3942303 . - . gene_id "RvY_07853"; transcript_id "RvY_07853.1"; Scaffold003 rebuild exon 3942396 3942398 . - . gene_id "RvY_07853"; transcript_id "RvY_07853.1"; Scaffold003 rebuild transcript 3944439 3944862 . - . gene_id "RvY_07854"; transcript_id "RvY_07854.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3944439 3944646 . - . gene_id "RvY_07854"; transcript_id "RvY_07854.1"; Scaffold003 rebuild exon 3944711 3944862 . - . gene_id "RvY_07854"; transcript_id "RvY_07854.1"; Scaffold003 rebuild transcript 3945844 3946167 . - . gene_id "RvY_07855"; transcript_id "RvY_07855.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3945844 3946167 . - . gene_id "RvY_07855"; transcript_id "RvY_07855.1"; Scaffold003 rebuild transcript 3946900 3947064 . - . gene_id "RvY_07856"; transcript_id "RvY_07856.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3946900 3947064 . - . gene_id "RvY_07856"; transcript_id "RvY_07856.1"; Scaffold003 rebuild transcript 3946924 3948727 . + . gene_id "RvY_07857"; transcript_id "RvY_07857.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor|[Trehalose_recp] Trehalose receptor"; Scaffold003 rebuild exon 3946924 3948000 . + . gene_id "RvY_07857"; transcript_id "RvY_07857.1"; Scaffold003 rebuild exon 3948218 3948295 . + . gene_id "RvY_07857"; transcript_id "RvY_07857.1"; Scaffold003 rebuild exon 3948402 3948524 . + . gene_id "RvY_07857"; transcript_id "RvY_07857.1"; Scaffold003 rebuild exon 3948599 3948727 . + . gene_id "RvY_07857"; transcript_id "RvY_07857.1"; Scaffold003 rebuild transcript 3949857 3950066 . + . gene_id "RvY_07858"; transcript_id "RvY_07858.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3949857 3950066 . + . gene_id "RvY_07858"; transcript_id "RvY_07858.1"; Scaffold003 rebuild transcript 3950082 3950249 . - . gene_id "RvY_07859"; transcript_id "RvY_07859.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3950082 3950249 . - . gene_id "RvY_07859"; transcript_id "RvY_07859.1"; Scaffold003 rebuild transcript 3952922 3953209 . + . gene_id "RvY_07860"; transcript_id "RvY_07860.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3952922 3953209 . + . gene_id "RvY_07860"; transcript_id "RvY_07860.1"; Scaffold003 rebuild transcript 3954743 3957474 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; gene_name "P2RX4"; annotation "purinergic receptor P2X, ligand-gated ion channel 4"; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; KO "K05218"; similar_genes "P2RX4_RAT(e-value:1.6e-17;bit-score:87.0)"; Scaffold003 rebuild exon 3954743 3954837 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3954918 3954974 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3955049 3955084 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3955148 3955307 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3955714 3955785 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3955902 3956083 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3956170 3956250 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3956464 3956605 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3956713 3956741 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3956801 3956902 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3956975 3957134 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild exon 3957232 3957474 . + . gene_id "RvY_07861"; transcript_id "RvY_07861.1"; Scaffold003 rebuild transcript 3958095 3961675 . - . gene_id "RvY_07862"; transcript_id "RvY_07862.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold003 rebuild exon 3958095 3958364 . - . gene_id "RvY_07862"; transcript_id "RvY_07862.1"; Scaffold003 rebuild exon 3958717 3958814 . - . gene_id "RvY_07862"; transcript_id "RvY_07862.1"; Scaffold003 rebuild exon 3958892 3959029 . - . gene_id "RvY_07862"; transcript_id "RvY_07862.1"; Scaffold003 rebuild exon 3959607 3959708 . - . gene_id "RvY_07862"; transcript_id "RvY_07862.1"; Scaffold003 rebuild exon 3961405 3961675 . - . gene_id "RvY_07862"; transcript_id "RvY_07862.1"; Scaffold003 rebuild transcript 3962381 3962599 . + . gene_id "RvY_07863"; transcript_id "RvY_07863.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3962381 3962599 . + . gene_id "RvY_07863"; transcript_id "RvY_07863.1"; Scaffold003 rebuild transcript 3963441 3965265 . + . gene_id "RvY_07864"; transcript_id "RvY_07864.1"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "P2RX4_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold003 rebuild exon 3963441 3963508 . + . gene_id "RvY_07864"; transcript_id "RvY_07864.1"; Scaffold003 rebuild exon 3963590 3963682 . + . gene_id "RvY_07864"; transcript_id "RvY_07864.1"; Scaffold003 rebuild exon 3964889 3965039 . + . gene_id "RvY_07864"; transcript_id "RvY_07864.1"; Scaffold003 rebuild exon 3965110 3965265 . + . gene_id "RvY_07864"; transcript_id "RvY_07864.1"; Scaffold003 rebuild transcript 3965767 3967211 . + . gene_id "RvY_07865"; transcript_id "RvY_07865.1"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "P2RX2_RAT(e-value:6.8e-10;bit-score:62.0)"; Scaffold003 rebuild exon 3965767 3965934 . + . gene_id "RvY_07865"; transcript_id "RvY_07865.1"; Scaffold003 rebuild exon 3966041 3966065 . + . gene_id "RvY_07865"; transcript_id "RvY_07865.1"; Scaffold003 rebuild exon 3966123 3966228 . + . gene_id "RvY_07865"; transcript_id "RvY_07865.1"; Scaffold003 rebuild exon 3966656 3966914 . + . gene_id "RvY_07865"; transcript_id "RvY_07865.1"; Scaffold003 rebuild exon 3967002 3967211 . + . gene_id "RvY_07865"; transcript_id "RvY_07865.1"; Scaffold003 rebuild transcript 3967454 3968682 . - . gene_id "RvY_07866"; transcript_id "RvY_07866.1"; gene_name "MIOX"; annotation "putative Inositol oxygenase"; Pfam "[DUF706] Family of unknown function (DUF706)"; EC "EC1.13.99.1"; KO "K00469"; similar_genes "MIOX_MOUSE(e-value:5.3e-48;bit-score:189.0)"; Scaffold003 rebuild exon 3967454 3967712 . - . gene_id "RvY_07866"; transcript_id "RvY_07866.1"; Scaffold003 rebuild exon 3967777 3968051 . - . gene_id "RvY_07866"; transcript_id "RvY_07866.1"; Scaffold003 rebuild exon 3968296 3968682 . - . gene_id "RvY_07866"; transcript_id "RvY_07866.1"; Scaffold003 rebuild transcript 3968881 3969213 . - . gene_id "RvY_07867"; transcript_id "RvY_07867.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3968881 3969213 . - . gene_id "RvY_07867"; transcript_id "RvY_07867.1"; Scaffold003 rebuild transcript 3969821 3970168 . + . gene_id "RvY_07868"; transcript_id "RvY_07868.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3969821 3970168 . + . gene_id "RvY_07868"; transcript_id "RvY_07868.1"; Scaffold003 rebuild transcript 3971435 3976384 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; annotation "hypothetical protein."; Pfam "[muHD] Muniscin C-terminal mu homology domain|[FCH] Fes/CIP4, and EFC/F-BAR homology domain"; similar_genes "FCHO2_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold003 rebuild exon 3971435 3971461 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3971590 3971756 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3971879 3972142 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3972203 3972437 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3972503 3972599 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3972852 3973016 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3973177 3973368 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3973637 3973747 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3973944 3974258 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3974549 3974991 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3975175 3975555 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild exon 3975929 3976384 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.1"; Scaffold003 rebuild transcript 3971435 3976384 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; annotation "hypothetical protein."; Pfam "[muHD] Muniscin C-terminal mu homology domain|[FCH] Fes/CIP4, and EFC/F-BAR homology domain"; similar_genes "FCHO2_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold003 rebuild exon 3971435 3971461 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3971590 3971756 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3971879 3972142 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3972203 3972437 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3972503 3972599 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3972852 3973016 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3973944 3974258 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3974549 3974991 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3975175 3975555 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild exon 3975929 3976384 . + . gene_id "RvY_07869"; transcript_id "RvY_07869.2"; Scaffold003 rebuild transcript 3976644 3978811 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; gene_name "AFMID"; annotation "arylformamidase [EC:3.5.1.9]"; EC "EC3.5.1.9"; KO "K01432"; Scaffold003 rebuild exon 3976644 3976838 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3976953 3977072 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3977146 3977290 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3977353 3977431 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3977722 3977825 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3977941 3978019 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3978091 3978194 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3978301 3978349 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3978443 3978550 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3978614 3978707 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild exon 3978791 3978811 . - . gene_id "RvY_07870"; transcript_id "RvY_07870.1"; Scaffold003 rebuild transcript 3979544 3980378 . - . gene_id "RvY_07871"; transcript_id "RvY_07871.1"; gene_name "HMGB-UBF_HMG-box"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions."; similar_genes "HMGT_ONCMY(e-value:1.9e-16;bit-score:84.0)"; Scaffold003 rebuild exon 3979544 3979612 . - . gene_id "RvY_07871"; transcript_id "RvY_07871.1"; Scaffold003 rebuild exon 3979740 3979926 . - . gene_id "RvY_07871"; transcript_id "RvY_07871.1"; Scaffold003 rebuild exon 3980004 3980173 . - . gene_id "RvY_07871"; transcript_id "RvY_07871.1"; Scaffold003 rebuild exon 3980232 3980378 . - . gene_id "RvY_07871"; transcript_id "RvY_07871.1"; Scaffold003 rebuild transcript 3981447 3981620 . - . gene_id "RvY_07872"; transcript_id "RvY_07872.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3981447 3981620 . - . gene_id "RvY_07872"; transcript_id "RvY_07872.1"; Scaffold003 rebuild transcript 3981798 3982564 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3981798 3982021 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.1"; Scaffold003 rebuild exon 3982133 3982160 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.1"; Scaffold003 rebuild exon 3982370 3982564 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.1"; Scaffold003 rebuild transcript 3981798 3982190 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3981798 3982021 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.2"; Scaffold003 rebuild exon 3982133 3982190 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.2"; Scaffold003 rebuild transcript 3981798 3982025 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3981798 3982025 . + . gene_id "RvY_07873"; transcript_id "RvY_07873.3"; Scaffold003 rebuild transcript 3983491 3986433 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 3983491 3983747 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; Scaffold003 rebuild exon 3983863 3983964 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; Scaffold003 rebuild exon 3984202 3984339 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; Scaffold003 rebuild exon 3984493 3984706 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; Scaffold003 rebuild exon 3985564 3985669 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; Scaffold003 rebuild exon 3986051 3986433 . - . gene_id "RvY_07874"; transcript_id "RvY_07874.1"; Scaffold003 rebuild transcript 3987002 3987202 . - . gene_id "RvY_07875"; transcript_id "RvY_07875.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3987002 3987202 . - . gene_id "RvY_07875"; transcript_id "RvY_07875.1"; Scaffold003 rebuild transcript 3987490 3990737 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; annotation "hypothetical protein."; Pfam "[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold003 rebuild exon 3987490 3987920 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3988015 3988167 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3988253 3988927 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3989023 3989094 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3989217 3989909 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3990037 3990153 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3990279 3990608 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild exon 3990701 3990737 . - . gene_id "RvY_07876"; transcript_id "RvY_07876.1"; Scaffold003 rebuild transcript 3990397 3990612 . + . gene_id "RvY_07877"; transcript_id "RvY_07877.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3990397 3990612 . + . gene_id "RvY_07877"; transcript_id "RvY_07877.1"; Scaffold003 rebuild transcript 3992875 3994959 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3992875 3993266 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.1"; Scaffold003 rebuild exon 3993460 3993692 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.1"; Scaffold003 rebuild exon 3993752 3993866 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.1"; Scaffold003 rebuild exon 3993930 3994259 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.1"; Scaffold003 rebuild exon 3994491 3994959 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.1"; Scaffold003 rebuild transcript 3993892 3994959 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3993892 3994959 . - . gene_id "RvY_07878"; transcript_id "RvY_07878.2"; Scaffold003 rebuild transcript 3995757 3996961 . - . gene_id "RvY_07879"; transcript_id "RvY_07879.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3995757 3995774 . - . gene_id "RvY_07879"; transcript_id "RvY_07879.1"; Scaffold003 rebuild exon 3995855 3995913 . - . gene_id "RvY_07879"; transcript_id "RvY_07879.1"; Scaffold003 rebuild exon 3996127 3996387 . - . gene_id "RvY_07879"; transcript_id "RvY_07879.1"; Scaffold003 rebuild exon 3996530 3996805 . - . gene_id "RvY_07879"; transcript_id "RvY_07879.1"; Scaffold003 rebuild exon 3996910 3996961 . - . gene_id "RvY_07879"; transcript_id "RvY_07879.1"; Scaffold003 rebuild transcript 3999322 4000202 . + . gene_id "RvY_07880"; transcript_id "RvY_07880.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 3999322 3999483 . + . gene_id "RvY_07880"; transcript_id "RvY_07880.1"; Scaffold003 rebuild exon 4000098 4000202 . + . gene_id "RvY_07880"; transcript_id "RvY_07880.1"; Scaffold003 rebuild transcript 4000486 4001836 . + . gene_id "RvY_07881"; transcript_id "RvY_07881.1"; annotation "hypothetical protein."; Pfam "[CD20] CD20-like family"; Scaffold003 rebuild exon 4000486 4000621 . + . gene_id "RvY_07881"; transcript_id "RvY_07881.1"; Scaffold003 rebuild exon 4000995 4001836 . + . gene_id "RvY_07881"; transcript_id "RvY_07881.1"; Scaffold003 rebuild transcript 4002212 4003235 . - . gene_id "RvY_07882"; transcript_id "RvY_07882.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4002212 4002526 . - . gene_id "RvY_07882"; transcript_id "RvY_07882.1"; Scaffold003 rebuild exon 4002585 4003235 . - . gene_id "RvY_07882"; transcript_id "RvY_07882.1"; Scaffold003 rebuild transcript 4004277 4007565 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; gene_name "APC6"; annotation "anaphase-promoting complex subunit 6"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_15] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; KO "K03353"; Scaffold003 rebuild exon 4004277 4004787 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4005094 4005267 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4005406 4005558 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4005629 4006000 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4006231 4006586 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4006761 4006943 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4007033 4007071 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4007138 4007235 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4007312 4007369 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild exon 4007458 4007565 . - . gene_id "RvY_07883"; transcript_id "RvY_07883.1"; Scaffold003 rebuild transcript 4008225 4011925 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; EC "(2,3)EC2.1.1.-"; similar_genes "(1)GAR1_KLULA(e-value:4.5e-09;bit-score:59.0)(2,3)FBRL_DEBHA(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 4008225 4008291 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4008373 4008542 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4008601 4008669 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4008771 4009019 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4009087 4009135 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4009964 4010046 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4010494 4010707 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4010769 4010885 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4011157 4011284 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4011497 4011803 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild exon 4011873 4011925 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.1"; Scaffold003 rebuild transcript 4008225 4011925 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; EC "(2,3)EC2.1.1.-"; similar_genes "(1)GAR1_KLULA(e-value:4.5e-09;bit-score:59.0)(2,3)FBRL_DEBHA(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 4008225 4008291 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4008373 4008542 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4008601 4008669 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4008774 4009019 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4009087 4009135 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4009964 4010046 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4010494 4010707 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4010769 4010885 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4011157 4011284 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4011497 4011803 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild exon 4011873 4011925 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.2"; Scaffold003 rebuild transcript 4008225 4011925 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; EC "(2,3)EC2.1.1.-"; similar_genes "(1)GAR1_KLULA(e-value:4.5e-09;bit-score:59.0)(2,3)FBRL_DEBHA(e-value:6.0e-11;bit-score:65.0)"; Scaffold003 rebuild exon 4008225 4008291 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4008373 4008542 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4008601 4008669 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4008774 4009019 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4009087 4009135 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4009964 4010046 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4010494 4010707 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4010769 4010885 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4011157 4011284 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4011497 4011713 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild exon 4011873 4011925 . + . gene_id "RvY_07884"; transcript_id "RvY_07884.3"; Scaffold003 rebuild transcript 4012542 4015314 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4012542 4012867 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4012930 4013140 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4013343 4013578 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4013670 4014430 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4014495 4014698 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4014759 4014945 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4015003 4015044 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild exon 4015128 4015314 . - . gene_id "RvY_07885"; transcript_id "RvY_07885.1"; Scaffold003 rebuild transcript 4015850 4016263 . - . gene_id "RvY_07886"; transcript_id "RvY_07886.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4015850 4016263 . - . gene_id "RvY_07886"; transcript_id "RvY_07886.1"; Scaffold003 rebuild transcript 4016343 4017296 . - . gene_id "RvY_07887"; transcript_id "RvY_07887.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold003 rebuild exon 4016343 4017296 . - . gene_id "RvY_07887"; transcript_id "RvY_07887.1"; Scaffold003 rebuild transcript 4017820 4019448 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4017820 4018170 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.1"; Scaffold003 rebuild exon 4018348 4018797 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.1"; Scaffold003 rebuild exon 4019041 4019448 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.1"; Scaffold003 rebuild transcript 4017820 4020126 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4017820 4018170 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.2"; Scaffold003 rebuild exon 4018348 4018797 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.2"; Scaffold003 rebuild exon 4019041 4019386 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.2"; Scaffold003 rebuild exon 4020086 4020126 . - . gene_id "RvY_07888"; transcript_id "RvY_07888.2"; Scaffold003 rebuild transcript 4020599 4021931 . + . gene_id "RvY_07889"; transcript_id "RvY_07889.1"; gene_name "PseudoU_synth_hTruB2_like"; annotation "hypothetical protein."; Pfam "[TruB_N] TruB family pseudouridylate synthase (N terminal domain)"; CDD "PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)."; Scaffold003 rebuild exon 4020599 4020722 . + . gene_id "RvY_07889"; transcript_id "RvY_07889.1"; Scaffold003 rebuild exon 4020798 4021070 . + . gene_id "RvY_07889"; transcript_id "RvY_07889.1"; Scaffold003 rebuild exon 4021309 4021931 . + . gene_id "RvY_07889"; transcript_id "RvY_07889.1"; Scaffold003 rebuild transcript 4022343 4022699 . - . gene_id "RvY_07890"; transcript_id "RvY_07890.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4022343 4022699 . - . gene_id "RvY_07890"; transcript_id "RvY_07890.1"; Scaffold003 rebuild transcript 4022955 4024677 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4022955 4023057 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4023128 4023182 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4023280 4023365 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4023447 4023465 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4023539 4023634 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4023760 4023830 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4023891 4023948 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4024212 4024238 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4024327 4024388 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4024467 4024493 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild exon 4024565 4024677 . + . gene_id "RvY_07891"; transcript_id "RvY_07891.1"; Scaffold003 rebuild transcript 4025299 4028769 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; gene_name "DDX42"; annotation "ATP-dependent RNA helicase DDX42"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "helicase; Provisional"; EC "EC3.6.1.-"; KO "K12835"; similar_genes "DDX42_CHICK(e-value:4.1e-118;bit-score:421.0)"; Scaffold003 rebuild exon 4025299 4025618 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4025736 4025915 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4026178 4026561 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4026872 4027215 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4027272 4027520 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4027584 4028044 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4028153 4028282 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4028346 4028460 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild exon 4028601 4028769 . - . gene_id "RvY_07892"; transcript_id "RvY_07892.1"; Scaffold003 rebuild transcript 4028838 4029789 . - . gene_id "RvY_07893"; transcript_id "RvY_07893.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4028838 4028885 . - . gene_id "RvY_07893"; transcript_id "RvY_07893.1"; Scaffold003 rebuild exon 4029538 4029789 . - . gene_id "RvY_07893"; transcript_id "RvY_07893.1"; Scaffold003 rebuild transcript 4029756 4032348 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; gene_name "(1,2)MOCS3(3)PRK07411(4)ThiF_MoeB_HesA_family"; annotation "(1,2)adenylyltransferase and sulfurtransferase MOCS3/UBA4 [EC:2.7.7.- 2.8.1.-](3,4)hypothetical protein."; Pfam "(4)[Shikimate_DH] Shikimate / quinate 5-dehydrogenase|(1,3)[Rhodanese] Rhodanese-like domain|[ThiF] ThiF family|(1,2,3)[MoeZ_MoeB] MoeZ/MoeB domain"; CDD "(1,2,4)ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the Scaffold003 rebuild exon 4029756 4029864 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4030167 4030259 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4030352 4030472 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4030627 4030825 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4030918 4031072 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4031153 4031220 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4031305 4031468 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4031673 4031772 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4032009 4032110 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild exon 4032188 4032348 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.1"; Scaffold003 rebuild transcript 4029756 4031624 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; gene_name "(1,2)MOCS3(3)PRK07411(4)ThiF_MoeB_HesA_family"; annotation "(1,2)adenylyltransferase and sulfurtransferase MOCS3/UBA4 [EC:2.7.7.- 2.8.1.-](3,4)hypothetical protein."; Pfam "(4)[Shikimate_DH] Shikimate / quinate 5-dehydrogenase|(1,3)[Rhodanese] Rhodanese-like domain|[ThiF] ThiF family|(1,2,3)[MoeZ_MoeB] MoeZ/MoeB domain"; CDD "(1,2,4)ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the Scaffold003 rebuild exon 4029756 4029864 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4030167 4030259 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4030352 4030472 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4030627 4030825 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4030918 4031023 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4031158 4031220 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4031305 4031468 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild exon 4031541 4031624 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.2"; Scaffold003 rebuild transcript 4030646 4032348 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; gene_name "(1,2)MOCS3(3)PRK07411(4)ThiF_MoeB_HesA_family"; annotation "(1,2)adenylyltransferase and sulfurtransferase MOCS3/UBA4 [EC:2.7.7.- 2.8.1.-](3,4)hypothetical protein."; Pfam "(4)[Shikimate_DH] Shikimate / quinate 5-dehydrogenase|(1,3)[Rhodanese] Rhodanese-like domain|[ThiF] ThiF family|(1,2,3)[MoeZ_MoeB] MoeZ/MoeB domain"; CDD "(1,2,4)ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the Scaffold003 rebuild exon 4030646 4030825 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild exon 4030918 4031023 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild exon 4031158 4031220 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild exon 4031305 4031468 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild exon 4031673 4031772 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild exon 4032009 4032110 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild exon 4032188 4032348 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.3"; Scaffold003 rebuild transcript 4029756 4031169 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; gene_name "(1,2)MOCS3(3)PRK07411(4)ThiF_MoeB_HesA_family"; annotation "(1,2)adenylyltransferase and sulfurtransferase MOCS3/UBA4 [EC:2.7.7.- 2.8.1.-](3,4)hypothetical protein."; Pfam "(4)[Shikimate_DH] Shikimate / quinate 5-dehydrogenase|(1,3)[Rhodanese] Rhodanese-like domain|[ThiF] ThiF family|(1,2,3)[MoeZ_MoeB] MoeZ/MoeB domain"; CDD "(1,2,4)ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the Scaffold003 rebuild exon 4029756 4029864 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; Scaffold003 rebuild exon 4030167 4030259 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; Scaffold003 rebuild exon 4030352 4030472 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; Scaffold003 rebuild exon 4030627 4030825 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; Scaffold003 rebuild exon 4030918 4031023 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; Scaffold003 rebuild exon 4031153 4031169 . + . gene_id "RvY_07894"; transcript_id "RvY_07894.4"; Scaffold003 rebuild transcript 4033586 4035398 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4033586 4033660 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4033870 4033915 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4034035 4034073 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4034147 4034165 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4034237 4034370 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4034493 4034546 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4034659 4034722 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4034877 4034914 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4035021 4035044 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4035129 4035184 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild exon 4035252 4035398 . + . gene_id "RvY_07895"; transcript_id "RvY_07895.1"; Scaffold003 rebuild transcript 4036628 4038439 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; gene_name "K01011"; annotation "3-mercaptopyruvate sulfurtransferase [EC:2.8.1.2]"; Pfam "[Rhodanese] Rhodanese-like domain"; CDD "Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]"; EC "EC2.8.1.1|EC2.8.1.2"; KO "K01011"; similar_genes "THTR_CHICK(e-value:3.9e-06;bit-score:49.0)"; Scaffold003 rebuild exon 4036628 4036891 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4036964 4036994 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4037069 4037089 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4037156 4037222 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4037295 4037392 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4037490 4037557 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4037644 4037673 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4037766 4037904 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild exon 4038285 4038439 . + . gene_id "RvY_07896"; transcript_id "RvY_07896.1"; Scaffold003 rebuild transcript 4039243 4040162 . - . gene_id "RvY_07897"; transcript_id "RvY_07897.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4039243 4039300 . - . gene_id "RvY_07897"; transcript_id "RvY_07897.1"; Scaffold003 rebuild exon 4039371 4039471 . - . gene_id "RvY_07897"; transcript_id "RvY_07897.1"; Scaffold003 rebuild exon 4039530 4039617 . - . gene_id "RvY_07897"; transcript_id "RvY_07897.1"; Scaffold003 rebuild exon 4039704 4039813 . - . gene_id "RvY_07897"; transcript_id "RvY_07897.1"; Scaffold003 rebuild exon 4039905 4040162 . - . gene_id "RvY_07897"; transcript_id "RvY_07897.1"; Scaffold003 rebuild transcript 4041564 4046677 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; gene_name "KAP95"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat|[IBN_N] Importin-beta N-terminal domain|[HEAT] HEAT repeat"; CDD "Karyopherin (importin) beta [Intracellular trafficking and secretion]"; KO "K14293"; similar_genes "IMB1_RAT(e-value:5.5e-18;bit-score:89.0)"; Scaffold003 rebuild exon 4041564 4041603 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4041783 4041841 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4041912 4042094 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4042162 4042359 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4042566 4042718 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4042801 4042950 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4043166 4043276 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4043344 4043514 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4043733 4043823 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4043903 4044150 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4044219 4044364 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4044429 4044504 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4044574 4044714 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4044774 4044924 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4045002 4045084 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4045328 4045435 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4045497 4045634 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4045700 4045805 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4046279 4046399 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild exon 4046494 4046677 . + . gene_id "RvY_07898"; transcript_id "RvY_07898.1"; Scaffold003 rebuild transcript 4047346 4050198 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; gene_name "GNRHR"; annotation "gonadotropin-releasing hormone receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K04280"; Scaffold003 rebuild exon 4047346 4047587 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; Scaffold003 rebuild exon 4048149 4048232 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; Scaffold003 rebuild exon 4048608 4048778 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; Scaffold003 rebuild exon 4049219 4049468 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; Scaffold003 rebuild exon 4049565 4049774 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; Scaffold003 rebuild exon 4049899 4050198 . - . gene_id "RvY_07899"; transcript_id "RvY_07899.1"; Scaffold003 rebuild transcript 4051505 4054601 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; annotation "hypothetical protein."; Pfam "[DUF1032]"; Scaffold003 rebuild exon 4051505 4052025 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; Scaffold003 rebuild exon 4052280 4052645 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; Scaffold003 rebuild exon 4052899 4053246 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; Scaffold003 rebuild exon 4053420 4053933 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; Scaffold003 rebuild exon 4054137 4054489 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; Scaffold003 rebuild exon 4054595 4054601 . - . gene_id "RvY_07900"; transcript_id "RvY_07900.1"; Scaffold003 rebuild transcript 4054692 4055081 . + . gene_id "RvY_07901"; transcript_id "RvY_07901.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4054692 4055081 . + . gene_id "RvY_07901"; transcript_id "RvY_07901.1"; Scaffold003 rebuild transcript 4055849 4057291 . + . gene_id "RvY_07902"; transcript_id "RvY_07902.1"; annotation "hypothetical protein."; Pfam "[ERGIC_N] Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)|[COPIIcoated_ERV] Endoplasmic reticulum vesicle transporter"; similar_genes "ERGI3_BOVIN(e-value:2.8e-17;bit-score:86.0)"; Scaffold003 rebuild exon 4055849 4056434 . + . gene_id "RvY_07902"; transcript_id "RvY_07902.1"; Scaffold003 rebuild exon 4056661 4056968 . + . gene_id "RvY_07902"; transcript_id "RvY_07902.1"; Scaffold003 rebuild exon 4057037 4057291 . + . gene_id "RvY_07902"; transcript_id "RvY_07902.1"; Scaffold003 rebuild transcript 4057498 4058508 . - . gene_id "RvY_07903"; transcript_id "RvY_07903.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4057498 4057985 . - . gene_id "RvY_07903"; transcript_id "RvY_07903.1"; Scaffold003 rebuild exon 4058154 4058508 . - . gene_id "RvY_07903"; transcript_id "RvY_07903.1"; Scaffold003 rebuild transcript 4059608 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4059608 4059700 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4059777 4059828 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4059902 4059931 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060011 4060032 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060102 4060152 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060222 4060324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060392 4060425 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060491 4060589 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060668 4060764 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060841 4060925 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild exon 4060983 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.1"; Scaffold003 rebuild transcript 4060019 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4060019 4060032 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060102 4060152 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060222 4060324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060392 4060425 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060491 4060589 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060668 4060764 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060841 4060925 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild exon 4060983 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.2"; Scaffold003 rebuild transcript 4060136 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4060136 4060152 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild exon 4060222 4060324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild exon 4060392 4060425 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild exon 4060491 4060589 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild exon 4060668 4060764 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild exon 4060841 4060925 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild exon 4060983 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.3"; Scaffold003 rebuild transcript 4060419 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4060419 4060425 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.4"; Scaffold003 rebuild exon 4060491 4060589 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.4"; Scaffold003 rebuild exon 4060668 4060764 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.4"; Scaffold003 rebuild exon 4060841 4060925 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.4"; Scaffold003 rebuild exon 4060983 4061324 . + . gene_id "RvY_07904"; transcript_id "RvY_07904.4"; Scaffold003 rebuild transcript 4062185 4064693 . - . gene_id "RvY_07905"; transcript_id "RvY_07905.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold003 rebuild exon 4062185 4062579 . - . gene_id "RvY_07905"; transcript_id "RvY_07905.1"; Scaffold003 rebuild exon 4064321 4064693 . - . gene_id "RvY_07905"; transcript_id "RvY_07905.1"; Scaffold003 rebuild transcript 4066176 4069435 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; gene_name "ERCC2"; annotation "TFIIH basal transcription factor complex helicase subunit"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[DEAD_2]|[Helicase_C_2] Helicase C-terminal domain|[DUF1227]"; CDD "DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "K10844"; similar_genes "ERCC2_CRIGR(e-value:1.3e-180;bit-score:629.0)"; Scaffold003 rebuild exon 4066176 4066271 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4066346 4066489 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4066562 4066788 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4066978 4067419 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4067635 4067774 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4067848 4068135 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4068384 4069327 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild exon 4069431 4069435 . - . gene_id "RvY_07906"; transcript_id "RvY_07906.1"; Scaffold003 rebuild transcript 4070254 4071834 . + . gene_id "RvY_07907"; transcript_id "RvY_07907.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4070254 4071834 . + . gene_id "RvY_07907"; transcript_id "RvY_07907.1"; Scaffold003 rebuild transcript 4071850 4072386 . - . gene_id "RvY_07908"; transcript_id "RvY_07908.1"; annotation "hypothetical protein."; Pfam "[RWD]"; Scaffold003 rebuild exon 4071850 4072386 . - . gene_id "RvY_07908"; transcript_id "RvY_07908.1"; Scaffold003 rebuild transcript 4072779 4075397 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; gene_name "DDX18"; annotation "Probable ATP-dependent RNA helicase pitchoune"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[DUF4217]"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K13179"; similar_genes "DDX18_DROME(e-value:7.5e-196;bit-score:680.0)"; Scaffold003 rebuild exon 4072779 4073007 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4073229 4073391 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4073470 4073885 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4073959 4074098 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4074240 4074401 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4074477 4074629 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4074857 4075205 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild exon 4075273 4075397 . + . gene_id "RvY_07909"; transcript_id "RvY_07909.2"; Scaffold003 rebuild transcript 4076925 4077369 . + . gene_id "RvY_07910"; transcript_id "RvY_07910.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4076925 4077054 . + . gene_id "RvY_07910"; transcript_id "RvY_07910.1"; Scaffold003 rebuild exon 4077179 4077369 . + . gene_id "RvY_07910"; transcript_id "RvY_07910.1"; Scaffold003 rebuild transcript 4078409 4082104 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; gene_name "INTS4"; annotation "integrator complex subunit 4"; Pfam "[HEAT] HEAT repeat"; KO "K13141"; similar_genes "INT4_XENLA(e-value:1.6e-11;bit-score:67.0)"; Scaffold003 rebuild exon 4078409 4078670 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild exon 4078741 4079018 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild exon 4079129 4079344 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild exon 4079521 4080326 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild exon 4080509 4081053 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild exon 4081258 4081787 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild exon 4081850 4082104 . - . gene_id "RvY_07911"; transcript_id "RvY_07911.1"; Scaffold003 rebuild transcript 4082654 4082857 . + . gene_id "RvY_07912"; transcript_id "RvY_07912.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4082654 4082857 . + . gene_id "RvY_07912"; transcript_id "RvY_07912.1"; Scaffold003 rebuild transcript 4083918 4087182 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; gene_name "sulP"; annotation "putative Sodium-independent sulfate anion transporter"; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; KO "(1)K14708"; similar_genes "S2611_MOUSE(e-value:1.2e-26;bit-score:118.0)"; Scaffold003 rebuild exon 4083918 4084729 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4084805 4085079 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4085162 4085485 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4085571 4085699 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4085967 4086003 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4086368 4086505 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4086586 4086623 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4086687 4086780 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild exon 4086879 4087182 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.1"; Scaffold003 rebuild transcript 4084669 4087182 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; gene_name "sulP"; annotation "putative Sodium-independent sulfate anion transporter"; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; KO "(1)K14708"; similar_genes "S2611_MOUSE(e-value:1.2e-26;bit-score:118.0)"; Scaffold003 rebuild exon 4084669 4084729 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4084805 4085079 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4085162 4085699 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4085967 4086003 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4086368 4086505 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4086586 4086623 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4086687 4086780 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild exon 4086879 4087182 . - . gene_id "RvY_07913"; transcript_id "RvY_07913.2"; Scaffold003 rebuild transcript 4086657 4087078 . + . gene_id "RvY_07914"; transcript_id "RvY_07914.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4086657 4086804 . + . gene_id "RvY_07914"; transcript_id "RvY_07914.1"; Scaffold003 rebuild exon 4086885 4087078 . + . gene_id "RvY_07914"; transcript_id "RvY_07914.1"; Scaffold003 rebuild transcript 4087448 4087759 . - . gene_id "RvY_07915"; transcript_id "RvY_07915.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4087448 4087759 . - . gene_id "RvY_07915"; transcript_id "RvY_07915.1"; Scaffold003 rebuild transcript 4088204 4089091 . - . gene_id "RvY_07916"; transcript_id "RvY_07916.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4088204 4088478 . - . gene_id "RvY_07916"; transcript_id "RvY_07916.1"; Scaffold003 rebuild exon 4088594 4088751 . - . gene_id "RvY_07916"; transcript_id "RvY_07916.1"; Scaffold003 rebuild exon 4088807 4088843 . - . gene_id "RvY_07916"; transcript_id "RvY_07916.1"; Scaffold003 rebuild exon 4089028 4089091 . - . gene_id "RvY_07916"; transcript_id "RvY_07916.1"; Scaffold003 rebuild transcript 4089382 4090398 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4089382 4089590 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.1"; Scaffold003 rebuild exon 4089788 4089886 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.1"; Scaffold003 rebuild exon 4089995 4090222 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.1"; Scaffold003 rebuild exon 4090329 4090398 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.1"; Scaffold003 rebuild transcript 4089729 4090398 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4089729 4089886 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.2"; Scaffold003 rebuild exon 4089995 4090222 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.2"; Scaffold003 rebuild exon 4090329 4090398 . - . gene_id "RvY_07917"; transcript_id "RvY_07917.2"; Scaffold003 rebuild transcript 4091371 4093492 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; gene_name "K08076"; annotation "astacin [EC:3.4.24.21]"; Pfam "[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.-|EC3.4.24.21"; KO "K08076"; similar_genes "UVS2_XENLA(e-value:1.2e-13;bit-score:74.0)"; Scaffold003 rebuild exon 4091371 4091491 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4091558 4091587 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4091686 4091813 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4091888 4091975 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4092037 4092157 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4092246 4092285 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4092357 4092495 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4092711 4093041 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild exon 4093372 4093492 . + . gene_id "RvY_07918"; transcript_id "RvY_07918.1"; Scaffold003 rebuild transcript 4094727 4099328 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; gene_name "S_TKc"; annotation "Serine/threonine-protein kinase dkf-2"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.13"; similar_genes "DKF2_CAEEL(e-value:8.9e-61;bit-score:231.0)"; Scaffold003 rebuild exon 4094727 4094963 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4096052 4096862 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4097153 4097256 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4097379 4097801 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4098008 4098304 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4098386 4098628 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4098822 4099118 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild exon 4099206 4099328 . + . gene_id "RvY_07919"; transcript_id "RvY_07919.1"; Scaffold003 rebuild transcript 4099968 4100399 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4099968 4100172 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.1"; Scaffold003 rebuild exon 4100272 4100399 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.1"; Scaffold003 rebuild transcript 4099980 4100455 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4099980 4100172 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.2"; Scaffold003 rebuild exon 4100272 4100354 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.2"; Scaffold003 rebuild exon 4100420 4100455 . + . gene_id "RvY_07920"; transcript_id "RvY_07920.2"; Scaffold003 rebuild transcript 4101619 4102143 . - . gene_id "RvY_07921"; transcript_id "RvY_07921.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4101619 4102143 . - . gene_id "RvY_07921"; transcript_id "RvY_07921.1"; Scaffold003 rebuild transcript 4102196 4102522 . + . gene_id "RvY_07922"; transcript_id "RvY_07922.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4102196 4102522 . + . gene_id "RvY_07922"; transcript_id "RvY_07922.1"; Scaffold003 rebuild transcript 4102959 4108241 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; gene_name "PH_anillin"; annotation "hypothetical protein."; Pfam "[Anillin] Cell division protein anillin"; CDD "Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes."; similar_genes "ANLN_HUMAN(e-value:1.3e-06;bit-score:51.0)"; Scaffold003 rebuild exon 4102959 4102982 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4103040 4103106 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4103176 4103295 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4103358 4103798 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4103972 4104387 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4104839 4105262 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4105704 4106173 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4106454 4106589 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4106664 4106831 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4106895 4107079 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4107142 4107387 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4107452 4107538 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4107731 4107838 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4107918 4108063 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild exon 4108124 4108241 . + . gene_id "RvY_07923"; transcript_id "RvY_07923.1"; Scaffold003 rebuild transcript 4108539 4110090 . - . gene_id "RvY_07924"; transcript_id "RvY_07924.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4108539 4108667 . - . gene_id "RvY_07924"; transcript_id "RvY_07924.1"; Scaffold003 rebuild exon 4108940 4109011 . - . gene_id "RvY_07924"; transcript_id "RvY_07924.1"; Scaffold003 rebuild exon 4109085 4109250 . - . gene_id "RvY_07924"; transcript_id "RvY_07924.1"; Scaffold003 rebuild exon 4109309 4109646 . - . gene_id "RvY_07924"; transcript_id "RvY_07924.1"; Scaffold003 rebuild exon 4109794 4110090 . - . gene_id "RvY_07924"; transcript_id "RvY_07924.1"; Scaffold003 rebuild transcript 4110776 4115104 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; gene_name "GANAB"; annotation "Neutral alpha-glucosidase C"; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31|[Gal_mutarotas_2] Galactose mutarotase-like"; CDD "This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae."; EC "EC3.2.1.20|EC3.2.1.84"; KO "K05546"; similar_genes "GANC_HUMAN(e-value:4.8e-68;bit-score:255.0)"; Scaffold003 rebuild exon 4110776 4110995 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4111080 4111189 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4111350 4111463 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4111546 4111620 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4111701 4111780 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4111854 4112103 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4112303 4112463 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4112546 4112642 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4112704 4113050 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4113286 4113646 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4113707 4113987 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4114070 4114169 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4114228 4114324 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4114450 4114620 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild exon 4114761 4115104 . - . gene_id "RvY_07925"; transcript_id "RvY_07925.1"; Scaffold003 rebuild transcript 4115250 4116959 . + . gene_id "RvY_07926"; transcript_id "RvY_07926.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4115250 4115267 . + . gene_id "RvY_07926"; transcript_id "RvY_07926.1"; Scaffold003 rebuild exon 4116399 4116959 . + . gene_id "RvY_07926"; transcript_id "RvY_07926.1"; Scaffold003 rebuild transcript 4115576 4115797 . - . gene_id "RvY_07927"; transcript_id "RvY_07927.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4115576 4115797 . - . gene_id "RvY_07927"; transcript_id "RvY_07927.1"; Scaffold003 rebuild transcript 4117971 4118651 . + . gene_id "RvY_07928"; transcript_id "RvY_07928.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4117971 4118071 . + . gene_id "RvY_07928"; transcript_id "RvY_07928.1"; Scaffold003 rebuild exon 4118134 4118354 . + . gene_id "RvY_07928"; transcript_id "RvY_07928.1"; Scaffold003 rebuild exon 4118458 4118651 . + . gene_id "RvY_07928"; transcript_id "RvY_07928.1"; Scaffold003 rebuild transcript 4117971 4118444 . + . gene_id "RvY_07928"; transcript_id "RvY_07928.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4117971 4118444 . + . gene_id "RvY_07928"; transcript_id "RvY_07928.2"; Scaffold003 rebuild transcript 4121089 4124702 . - . gene_id "RvY_07929"; transcript_id "RvY_07929.1"; gene_name "FOXC"; annotation "putative Forkhead box protein C2"; Pfam "[Fork_head] Fork head domain"; KO "K09396"; similar_genes "FOXC2_XENTR(e-value:1.1e-50;bit-score:197.0)"; Scaffold003 rebuild exon 4121089 4121549 . - . gene_id "RvY_07929"; transcript_id "RvY_07929.1"; Scaffold003 rebuild exon 4121973 4122505 . - . gene_id "RvY_07929"; transcript_id "RvY_07929.1"; Scaffold003 rebuild exon 4124197 4124702 . - . gene_id "RvY_07929"; transcript_id "RvY_07929.1"; Scaffold003 rebuild transcript 4129524 4129771 . - . gene_id "RvY_07930"; transcript_id "RvY_07930.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4129524 4129598 . - . gene_id "RvY_07930"; transcript_id "RvY_07930.1"; Scaffold003 rebuild exon 4129667 4129771 . - . gene_id "RvY_07930"; transcript_id "RvY_07930.1"; Scaffold003 rebuild transcript 4130441 4132259 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; gene_name "AURKA"; annotation "Serine/threonine-protein kinase 12"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K11481"; similar_genes "AURKB_DANRE(e-value:3.0e-80;bit-score:296.0)"; Scaffold003 rebuild exon 4130441 4130545 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild exon 4130609 4130852 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild exon 4131078 4131226 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild exon 4131295 4131433 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild exon 4131531 4131610 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild exon 4131669 4131774 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild exon 4131871 4132259 . - . gene_id "RvY_07931"; transcript_id "RvY_07931.1"; Scaffold003 rebuild transcript 4133006 4133317 . - . gene_id "RvY_07932"; transcript_id "RvY_07932.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4133006 4133317 . - . gene_id "RvY_07932"; transcript_id "RvY_07932.1"; Scaffold003 rebuild transcript 4133361 4137581 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; gene_name "RBM39"; annotation "putative RNA-binding protein 39"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed."; KO "K13091"; similar_genes "RBM39_HUMAN(e-value:3.6e-32;bit-score:136.0)"; Scaffold003 rebuild exon 4133361 4133468 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild exon 4134446 4134513 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild exon 4134789 4135339 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild exon 4135591 4136057 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild exon 4136124 4136189 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild exon 4136545 4137046 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild exon 4137481 4137581 . + . gene_id "RvY_07933"; transcript_id "RvY_07933.1"; Scaffold003 rebuild transcript 4137970 4142480 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; gene_name "VAV"; annotation "putative Proto-oncogene vav"; Pfam "[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain|[SH3_2] Variant SH3 domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[SH2]|[SH3_1] SH3 domain|[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; KO "K05730"; similar_genes "VAV_MOUSE(e-value:2.0e-26;bit-score:117.0)"; Scaffold003 rebuild exon 4137970 4138014 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4138297 4138657 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4138721 4139171 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4139430 4139680 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4139762 4139874 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4140157 4140243 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4140319 4140367 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4140445 4140803 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4141106 4141489 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4141611 4141728 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4141802 4141944 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4142041 4142160 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild exon 4142271 4142480 . - . gene_id "RvY_07934"; transcript_id "RvY_07934.1"; Scaffold003 rebuild transcript 4142924 4144394 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; annotation "hypothetical protein."; Pfam "[Oligomerisation]"; Scaffold003 rebuild exon 4142924 4143070 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; Scaffold003 rebuild exon 4143194 4143313 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; Scaffold003 rebuild exon 4143374 4143623 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; Scaffold003 rebuild exon 4143699 4143877 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; Scaffold003 rebuild exon 4144029 4144113 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; Scaffold003 rebuild exon 4144192 4144394 . + . gene_id "RvY_07935"; transcript_id "RvY_07935.1"; Scaffold003 rebuild transcript 4144744 4145712 . - . gene_id "RvY_07936"; transcript_id "RvY_07936.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4144744 4145712 . - . gene_id "RvY_07936"; transcript_id "RvY_07936.1"; Scaffold003 rebuild transcript 4146397 4148073 . + . gene_id "RvY_07937"; transcript_id "RvY_07937.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4146397 4147344 . + . gene_id "RvY_07937"; transcript_id "RvY_07937.1"; Scaffold003 rebuild exon 4147549 4147854 . + . gene_id "RvY_07937"; transcript_id "RvY_07937.1"; Scaffold003 rebuild exon 4147933 4148073 . + . gene_id "RvY_07937"; transcript_id "RvY_07937.1"; Scaffold003 rebuild transcript 4148261 4150261 . - . gene_id "RvY_07938"; transcript_id "RvY_07938.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[CAF1C_H4-bd] Histone-binding protein RBBP4 or subunit C of CAF1 complex"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; EC "EC2.3.1.48"; similar_genes "HAT2_ASPOR(e-value:1.3e-08;bit-score:58.0)"; Scaffold003 rebuild exon 4148261 4149486 . - . gene_id "RvY_07938"; transcript_id "RvY_07938.1"; Scaffold003 rebuild exon 4149697 4149748 . - . gene_id "RvY_07938"; transcript_id "RvY_07938.1"; Scaffold003 rebuild exon 4149853 4150158 . - . gene_id "RvY_07938"; transcript_id "RvY_07938.1"; Scaffold003 rebuild exon 4150217 4150261 . - . gene_id "RvY_07938"; transcript_id "RvY_07938.1"; Scaffold003 rebuild transcript 4150711 4154045 . + . gene_id "RvY_07939"; transcript_id "RvY_07939.1"; gene_name "Vps16_N"; annotation "hypothetical protein."; Pfam "[Vps16_N] Vps16, N-terminal region|[Vps16_C] Vps16, C-terminal region"; CDD "Vps16, N-terminal region. This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport. The role of VPS16 in this complex is not known."; similar_genes "VPS16_BOVIN(e-value:3.6e-15;bit-score:79.0)"; Scaffold003 rebuild exon 4150711 4150972 . + . gene_id "RvY_07939"; transcript_id "RvY_07939.1"; Scaffold003 rebuild exon 4151033 4151758 . + . gene_id "RvY_07939"; transcript_id "RvY_07939.1"; Scaffold003 rebuild exon 4152038 4152476 . + . gene_id "RvY_07939"; transcript_id "RvY_07939.1"; Scaffold003 rebuild exon 4152896 4154045 . + . gene_id "RvY_07939"; transcript_id "RvY_07939.1"; Scaffold003 rebuild transcript 4154920 4156230 . + . gene_id "RvY_07940"; transcript_id "RvY_07940.1"; gene_name "SERPIN"; annotation "hypothetical protein."; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia."; KO "K13963"; similar_genes "SPB6_MOUSE(e-value:8.1e-15;bit-score:78.0)"; Scaffold003 rebuild exon 4154920 4155967 . + . gene_id "RvY_07940"; transcript_id "RvY_07940.1"; Scaffold003 rebuild exon 4156040 4156230 . + . gene_id "RvY_07940"; transcript_id "RvY_07940.1"; Scaffold003 rebuild transcript 4156650 4157778 . - . gene_id "RvY_07941"; transcript_id "RvY_07941.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4156650 4156956 . - . gene_id "RvY_07941"; transcript_id "RvY_07941.1"; Scaffold003 rebuild exon 4157075 4157115 . - . gene_id "RvY_07941"; transcript_id "RvY_07941.1"; Scaffold003 rebuild exon 4157704 4157778 . - . gene_id "RvY_07941"; transcript_id "RvY_07941.1"; Scaffold003 rebuild transcript 4157964 4158175 . - . gene_id "RvY_07942"; transcript_id "RvY_07942.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4157964 4158020 . - . gene_id "RvY_07942"; transcript_id "RvY_07942.1"; Scaffold003 rebuild exon 4158101 4158175 . - . gene_id "RvY_07942"; transcript_id "RvY_07942.1"; Scaffold003 rebuild transcript 4158478 4159346 . - . gene_id "RvY_07943"; transcript_id "RvY_07943.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4158478 4159206 . - . gene_id "RvY_07943"; transcript_id "RvY_07943.1"; Scaffold003 rebuild exon 4159311 4159346 . - . gene_id "RvY_07943"; transcript_id "RvY_07943.1"; Scaffold003 rebuild transcript 4159554 4160420 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.1"; gene_name "(2)BTB"; annotation "hypothetical protein."; CDD "(2)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold003 rebuild exon 4159554 4159709 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.1"; Scaffold003 rebuild exon 4160038 4160146 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.1"; Scaffold003 rebuild exon 4160260 4160420 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.1"; Scaffold003 rebuild transcript 4159990 4160420 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.2"; gene_name "(2)BTB"; annotation "hypothetical protein."; CDD "(2)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold003 rebuild exon 4159990 4160146 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.2"; Scaffold003 rebuild exon 4160260 4160420 . - . gene_id "RvY_07944"; transcript_id "RvY_07944.2"; Scaffold003 rebuild transcript 4160864 4162293 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; annotation "hypothetical protein."; Pfam "[FR47] FR47-like protein|[Gly_acyl_tr_N] Aralkyl acyl-CoA:amino acid N-acyltransferase"; Scaffold003 rebuild exon 4160864 4161296 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; Scaffold003 rebuild exon 4161369 4161498 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; Scaffold003 rebuild exon 4161721 4161838 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; Scaffold003 rebuild exon 4161906 4161976 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; Scaffold003 rebuild exon 4162055 4162103 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; Scaffold003 rebuild exon 4162219 4162293 . - . gene_id "RvY_07945"; transcript_id "RvY_07945.1"; Scaffold003 rebuild transcript 4162704 4163534 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.1"; annotation "hypothetical protein."; Pfam "[UPF0220] Uncharacterised protein family (UPF0220)"; Scaffold003 rebuild exon 4162704 4162755 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.1"; Scaffold003 rebuild exon 4162809 4162866 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.1"; Scaffold003 rebuild exon 4162931 4163079 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.1"; Scaffold003 rebuild exon 4163194 4163534 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.1"; Scaffold003 rebuild transcript 4162704 4163534 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.2"; annotation "hypothetical protein."; Pfam "[UPF0220] Uncharacterised protein family (UPF0220)"; Scaffold003 rebuild exon 4162704 4162755 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.2"; Scaffold003 rebuild exon 4162809 4162866 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.2"; Scaffold003 rebuild exon 4162931 4163079 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.2"; Scaffold003 rebuild exon 4163194 4163306 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.2"; Scaffold003 rebuild exon 4163427 4163534 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.2"; Scaffold003 rebuild transcript 4162899 4163534 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.3"; annotation "hypothetical protein."; Pfam "[UPF0220] Uncharacterised protein family (UPF0220)"; Scaffold003 rebuild exon 4162899 4163079 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.3"; Scaffold003 rebuild exon 4163194 4163306 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.3"; Scaffold003 rebuild exon 4163427 4163534 . - . gene_id "RvY_07946"; transcript_id "RvY_07946.3"; Scaffold003 rebuild transcript 4163924 4165946 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4163924 4164040 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4164118 4164242 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4164330 4164495 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4164564 4164682 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4164759 4164837 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4164911 4165062 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4165120 4165336 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4165406 4165581 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild exon 4165673 4165946 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.1"; Scaffold003 rebuild transcript 4164019 4165946 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4164019 4164242 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4164330 4164495 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4164564 4164682 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4164759 4164837 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4164911 4165062 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4165120 4165336 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4165406 4165581 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild exon 4165673 4165946 . - . gene_id "RvY_07947"; transcript_id "RvY_07947.2"; Scaffold003 rebuild transcript 4166707 4167850 . + . gene_id "RvY_07948"; transcript_id "RvY_07948.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)"; Scaffold003 rebuild exon 4166707 4167316 . + . gene_id "RvY_07948"; transcript_id "RvY_07948.1"; Scaffold003 rebuild exon 4167492 4167850 . + . gene_id "RvY_07948"; transcript_id "RvY_07948.1"; Scaffold003 rebuild transcript 4168900 4170855 . - . gene_id "RvY_07949"; transcript_id "RvY_07949.1"; gene_name "NDUFV1"; annotation "NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial"; Pfam "[SLBB]|[NADH_4Fe-4S] NADH-ubiquinone oxidoreductase-F iron-sulfur binding region|[Complex1_51K] Respiratory-chain NADH dehydrogenase 51 Kd subunit"; CDD "NADH dehydrogenase I subunit F; Provisional"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03942"; similar_genes "NDUV1_BOVIN(e-value:2.1e-225;bit-score:778.0)"; Scaffold003 rebuild exon 4168900 4169408 . - . gene_id "RvY_07949"; transcript_id "RvY_07949.1"; Scaffold003 rebuild exon 4169614 4170019 . - . gene_id "RvY_07949"; transcript_id "RvY_07949.1"; Scaffold003 rebuild exon 4170283 4170855 . - . gene_id "RvY_07949"; transcript_id "RvY_07949.1"; Scaffold003 rebuild transcript 4171329 4175353 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; gene_name "DDX1"; annotation "ATP-dependent RNA helicase DDX1"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[SPRY]"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K13177"; similar_genes "DDX1_MACFA(e-value:6.4e-72;bit-score:268.0)"; Scaffold003 rebuild exon 4171329 4171344 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4171443 4171494 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4171580 4171643 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4171734 4171863 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4171984 4172031 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4172110 4172196 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4172300 4172460 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4172567 4172770 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4172979 4173140 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4173215 4173328 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4173440 4173679 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4173749 4173935 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4173993 4174279 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4174549 4174897 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild exon 4175232 4175353 . + . gene_id "RvY_07950"; transcript_id "RvY_07950.1"; Scaffold003 rebuild transcript 4175643 4177622 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; gene_name "LYPLA3"; annotation "lysophospholipase III [EC:3.1.1.5]"; Pfam "[LACT] Lecithin:cholesterol acyltransferase"; CDD "Lecithin:cholesterol acyltransferase. Lecithin:cholesterol acyltransferase (LACT) is involved in extracellular metabolism of plasma lipoproteins, including cholesterol."; EC "EC2.3.1.43|EC3.1.1.5"; KO "K06129"; similar_genes "LCAT_TATKG(e-value:1.7e-08;bit-score:57.0)"; Scaffold003 rebuild exon 4175643 4175812 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4175994 4176087 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4176166 4176422 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4176495 4176722 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4176806 4176904 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4176968 4177008 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4177076 4177153 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4177213 4177369 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild exon 4177451 4177622 . - . gene_id "RvY_07951"; transcript_id "RvY_07951.1"; Scaffold003 rebuild transcript 4178395 4180708 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4178395 4179377 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; Scaffold003 rebuild exon 4179448 4179489 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; Scaffold003 rebuild exon 4179569 4179676 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; Scaffold003 rebuild exon 4179768 4179848 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; Scaffold003 rebuild exon 4180092 4180164 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; Scaffold003 rebuild exon 4180226 4180708 . - . gene_id "RvY_07952"; transcript_id "RvY_07952.1"; Scaffold003 rebuild transcript 4181592 4182719 . + . gene_id "RvY_07953"; transcript_id "RvY_07953.1"; gene_name "ELAV_HUD_SF"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076)."; Scaffold003 rebuild exon 4181592 4181817 . + . gene_id "RvY_07953"; transcript_id "RvY_07953.1"; Scaffold003 rebuild exon 4182003 4182106 . + . gene_id "RvY_07953"; transcript_id "RvY_07953.1"; Scaffold003 rebuild exon 4182182 4182335 . + . gene_id "RvY_07953"; transcript_id "RvY_07953.1"; Scaffold003 rebuild exon 4182535 4182719 . + . gene_id "RvY_07953"; transcript_id "RvY_07953.1"; Scaffold003 rebuild transcript 4183136 4187029 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4183136 4183399 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4183462 4183655 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4183740 4183959 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4184168 4184488 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4184648 4184736 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4184808 4185222 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4185455 4185739 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4185808 4186222 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild exon 4186290 4187029 . - . gene_id "RvY_07954"; transcript_id "RvY_07954.1"; Scaffold003 rebuild transcript 4187583 4190311 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; gene_name "B41"; annotation "Ezrin"; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[ERM] Ezrin/radixin/moesin family|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "EZRI_HUMAN(e-value:6.4e-53;bit-score:205.0)"; Scaffold003 rebuild exon 4187583 4187669 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4187772 4187900 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4187977 4188186 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4188254 4188416 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4188497 4188564 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4188627 4188761 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4188821 4188949 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4189016 4189198 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4189399 4189829 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4190024 4190177 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild exon 4190261 4190311 . + . gene_id "RvY_07955"; transcript_id "RvY_07955.1"; Scaffold003 rebuild transcript 4190540 4191470 . - . gene_id "RvY_07956"; transcript_id "RvY_07956.1"; gene_name "CzcD"; annotation "hypothetical protein."; Pfam "[Cation_efflux] Cation efflux family"; CDD "Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]"; similar_genes "ZRC1_YEAST(e-value:1.5e-07;bit-score:54.0)"; Scaffold003 rebuild exon 4190540 4190860 . - . gene_id "RvY_07956"; transcript_id "RvY_07956.1"; Scaffold003 rebuild exon 4190922 4191001 . - . gene_id "RvY_07956"; transcript_id "RvY_07956.1"; Scaffold003 rebuild exon 4191062 4191105 . - . gene_id "RvY_07956"; transcript_id "RvY_07956.1"; Scaffold003 rebuild exon 4191161 4191302 . - . gene_id "RvY_07956"; transcript_id "RvY_07956.1"; Scaffold003 rebuild exon 4191374 4191470 . - . gene_id "RvY_07956"; transcript_id "RvY_07956.1"; Scaffold003 rebuild transcript 4191922 4192309 . - . gene_id "RvY_07957"; transcript_id "RvY_07957.1"; gene_name "CzcD"; annotation "hypothetical protein."; Pfam "[Cation_efflux] Cation efflux family"; CDD "Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]"; Scaffold003 rebuild exon 4191922 4191946 . - . gene_id "RvY_07957"; transcript_id "RvY_07957.1"; Scaffold003 rebuild exon 4192026 4192060 . - . gene_id "RvY_07957"; transcript_id "RvY_07957.1"; Scaffold003 rebuild exon 4192136 4192309 . - . gene_id "RvY_07957"; transcript_id "RvY_07957.1"; Scaffold003 rebuild transcript 4194012 4199389 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; gene_name "HDAC6_10"; annotation "Histone deacetylase 10"; Pfam "[Hist_deacetyl] Histone deacetylase domain"; EC "EC3.5.1.98"; KO "K11407"; similar_genes "HDA10_RAT(e-value:2.8e-51;bit-score:199.0)"; Scaffold003 rebuild exon 4194012 4194022 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4194094 4194183 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4194259 4194317 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4194382 4194413 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4194499 4194648 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4194720 4194817 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4194897 4194935 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4195016 4195081 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4195145 4195213 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4195505 4195697 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4195776 4195835 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4196357 4196446 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4196524 4196553 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4196797 4196873 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4196934 4197023 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4197086 4197265 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4197333 4197462 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4197551 4197712 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4197782 4197879 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4197961 4198010 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4198081 4198135 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4198225 4198293 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4198361 4198484 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4198582 4198644 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4198726 4198893 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4198960 4199048 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4199123 4199199 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild exon 4199292 4199389 . + . gene_id "RvY_07958"; transcript_id "RvY_07958.1"; Scaffold003 rebuild transcript 4199948 4200957 . + . gene_id "RvY_07959"; transcript_id "RvY_07959.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4199948 4200152 . + . gene_id "RvY_07959"; transcript_id "RvY_07959.1"; Scaffold003 rebuild exon 4200222 4200698 . + . gene_id "RvY_07959"; transcript_id "RvY_07959.1"; Scaffold003 rebuild exon 4200884 4200957 . + . gene_id "RvY_07959"; transcript_id "RvY_07959.1"; Scaffold003 rebuild transcript 4200991 4202944 . + . gene_id "RvY_07960"; transcript_id "RvY_07960.1"; annotation "hypothetical protein."; Pfam "[PUB]"; KO "K14011"; Scaffold003 rebuild exon 4200991 4201269 . + . gene_id "RvY_07960"; transcript_id "RvY_07960.1"; Scaffold003 rebuild exon 4201495 4201908 . + . gene_id "RvY_07960"; transcript_id "RvY_07960.1"; Scaffold003 rebuild exon 4202092 4202310 . + . gene_id "RvY_07960"; transcript_id "RvY_07960.1"; Scaffold003 rebuild exon 4202528 4202944 . + . gene_id "RvY_07960"; transcript_id "RvY_07960.1"; Scaffold003 rebuild transcript 4203402 4204835 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4203402 4203450 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; Scaffold003 rebuild exon 4203515 4203559 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; Scaffold003 rebuild exon 4203620 4203837 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; Scaffold003 rebuild exon 4203917 4203966 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; Scaffold003 rebuild exon 4204050 4204487 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; Scaffold003 rebuild exon 4204610 4204835 . + . gene_id "RvY_07961"; transcript_id "RvY_07961.1"; Scaffold003 rebuild transcript 4205126 4208020 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 4205126 4205351 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; Scaffold003 rebuild exon 4205606 4206012 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; Scaffold003 rebuild exon 4206085 4206199 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; Scaffold003 rebuild exon 4206494 4206614 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; Scaffold003 rebuild exon 4207644 4207761 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; Scaffold003 rebuild exon 4207850 4208020 . - . gene_id "RvY_07962"; transcript_id "RvY_07962.1"; Scaffold003 rebuild transcript 4208757 4209715 . + . gene_id "RvY_07963"; transcript_id "RvY_07963.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4208757 4208862 . + . gene_id "RvY_07963"; transcript_id "RvY_07963.1"; Scaffold003 rebuild exon 4208977 4209255 . + . gene_id "RvY_07963"; transcript_id "RvY_07963.1"; Scaffold003 rebuild exon 4209336 4209715 . + . gene_id "RvY_07963"; transcript_id "RvY_07963.1"; Scaffold003 rebuild transcript 4209748 4210337 . - . gene_id "RvY_07964"; transcript_id "RvY_07964.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold003 rebuild exon 4209748 4209954 . - . gene_id "RvY_07964"; transcript_id "RvY_07964.1"; Scaffold003 rebuild exon 4210041 4210337 . - . gene_id "RvY_07964"; transcript_id "RvY_07964.1"; Scaffold003 rebuild transcript 4210778 4211384 . - . gene_id "RvY_07965"; transcript_id "RvY_07965.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4210778 4210933 . - . gene_id "RvY_07965"; transcript_id "RvY_07965.1"; Scaffold003 rebuild exon 4211358 4211384 . - . gene_id "RvY_07965"; transcript_id "RvY_07965.1"; Scaffold003 rebuild transcript 4212961 4214257 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.1"; gene_name "(1)K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain|[Sulfotransfer_3] Sulfotransferase family"; KO "(1)K01025"; Scaffold003 rebuild exon 4212961 4213266 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.1"; Scaffold003 rebuild exon 4213478 4213699 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.1"; Scaffold003 rebuild exon 4213759 4213942 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.1"; Scaffold003 rebuild exon 4214139 4214257 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.1"; Scaffold003 rebuild transcript 4212961 4214004 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.2"; gene_name "(1)K01025"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain|[Sulfotransfer_3] Sulfotransferase family"; KO "(1)K01025"; Scaffold003 rebuild exon 4212961 4213266 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.2"; Scaffold003 rebuild exon 4213478 4213699 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.2"; Scaffold003 rebuild exon 4213759 4214004 . + . gene_id "RvY_07966"; transcript_id "RvY_07966.2"; Scaffold003 rebuild transcript 4214411 4217908 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; gene_name "malZ"; annotation "putative Oligo-1,6-glucosidase"; Pfam "[Alpha-amylase] Alpha amylase, catalytic domain"; CDD "trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530)."; EC "EC3.2.1.10|EC3.2.1.20"; KO "K01187"; similar_genes "O16G_BACTR(e-value:7.4e-37;bit-score:152.0)"; Scaffold003 rebuild exon 4214411 4214676 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4214745 4214841 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4215071 4215202 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4215295 4215455 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4215534 4215573 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4215785 4215983 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4216052 4216173 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4216258 4216401 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4216505 4216627 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4216812 4216901 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4216984 4217078 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4217165 4217344 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4217492 4217546 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild exon 4217645 4217908 . - . gene_id "RvY_07967"; transcript_id "RvY_07967.1"; Scaffold003 rebuild transcript 4218307 4219518 . - . gene_id "RvY_07968"; transcript_id "RvY_07968.1"; gene_name "RPC34"; annotation "DNA-directed RNA polymerase III subunit C34 [EC:2.7.7.6]"; Pfam "[RNA_pol_Rpc34] RNA polymerase Rpc34 subunit"; EC "EC2.7.7.6"; KO "K03025"; Scaffold003 rebuild exon 4218307 4218393 . - . gene_id "RvY_07968"; transcript_id "RvY_07968.1"; Scaffold003 rebuild exon 4218461 4218628 . - . gene_id "RvY_07968"; transcript_id "RvY_07968.1"; Scaffold003 rebuild exon 4218832 4219050 . - . gene_id "RvY_07968"; transcript_id "RvY_07968.1"; Scaffold003 rebuild exon 4219115 4219423 . - . gene_id "RvY_07968"; transcript_id "RvY_07968.1"; Scaffold003 rebuild exon 4219507 4219518 . - . gene_id "RvY_07968"; transcript_id "RvY_07968.1"; Scaffold003 rebuild transcript 4220512 4222165 . + . gene_id "RvY_07969"; transcript_id "RvY_07969.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4220512 4220698 . + . gene_id "RvY_07969"; transcript_id "RvY_07969.1"; Scaffold003 rebuild exon 4220768 4221677 . + . gene_id "RvY_07969"; transcript_id "RvY_07969.1"; Scaffold003 rebuild exon 4221877 4222029 . + . gene_id "RvY_07969"; transcript_id "RvY_07969.1"; Scaffold003 rebuild exon 4222099 4222165 . + . gene_id "RvY_07969"; transcript_id "RvY_07969.1"; Scaffold003 rebuild transcript 4222578 4224832 . - . gene_id "RvY_07970"; transcript_id "RvY_07970.1"; gene_name "PTZ00146"; annotation "putative Glycine-rich cell wall structural protein"; CDD "fibrillarin; Provisional"; similar_genes "GRP1_HORVU(e-value:4.1e-31;bit-score:132.0)"; Scaffold003 rebuild exon 4222578 4224440 . - . gene_id "RvY_07970"; transcript_id "RvY_07970.1"; Scaffold003 rebuild exon 4224812 4224832 . - . gene_id "RvY_07970"; transcript_id "RvY_07970.1"; Scaffold003 rebuild transcript 4226413 4228452 . - . gene_id "RvY_07971"; transcript_id "RvY_07971.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 4226413 4227117 . - . gene_id "RvY_07971"; transcript_id "RvY_07971.1"; Scaffold003 rebuild exon 4227325 4227842 . - . gene_id "RvY_07971"; transcript_id "RvY_07971.1"; Scaffold003 rebuild exon 4227909 4228452 . - . gene_id "RvY_07971"; transcript_id "RvY_07971.1"; Scaffold003 rebuild transcript 4229053 4230174 . - . gene_id "RvY_07972"; transcript_id "RvY_07972.1"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; Scaffold003 rebuild exon 4229053 4229517 . - . gene_id "RvY_07972"; transcript_id "RvY_07972.1"; Scaffold003 rebuild exon 4229740 4230174 . - . gene_id "RvY_07972"; transcript_id "RvY_07972.1"; Scaffold003 rebuild transcript 4230655 4231970 . + . gene_id "RvY_07973"; transcript_id "RvY_07973.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4230655 4230926 . + . gene_id "RvY_07973"; transcript_id "RvY_07973.1"; Scaffold003 rebuild exon 4231204 4231409 . + . gene_id "RvY_07973"; transcript_id "RvY_07973.1"; Scaffold003 rebuild exon 4231474 4231592 . + . gene_id "RvY_07973"; transcript_id "RvY_07973.1"; Scaffold003 rebuild exon 4231660 4231736 . + . gene_id "RvY_07973"; transcript_id "RvY_07973.1"; Scaffold003 rebuild exon 4231823 4231970 . + . gene_id "RvY_07973"; transcript_id "RvY_07973.1"; Scaffold003 rebuild transcript 4232552 4234859 . + . gene_id "RvY_07974"; transcript_id "RvY_07974.1"; gene_name "5C_CHO_kinase"; annotation "hypothetical protein."; Pfam "[FGGY_N] FGGY family of carbohydrate kinases, N-terminal domain|[FGGY_C] FGGY family of carbohydrate kinases, C-terminal domain"; CDD "FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins."; EC "EC2.7.1.-"; similar_genes "FGGY_MOUSE(e-value:2.8e-17;bit-score:86.0)"; Scaffold003 rebuild exon 4232552 4232585 . + . gene_id "RvY_07974"; transcript_id "RvY_07974.1"; Scaffold003 rebuild exon 4232666 4233032 . + . gene_id "RvY_07974"; transcript_id "RvY_07974.1"; Scaffold003 rebuild exon 4233245 4233896 . + . gene_id "RvY_07974"; transcript_id "RvY_07974.1"; Scaffold003 rebuild exon 4234197 4234859 . + . gene_id "RvY_07974"; transcript_id "RvY_07974.1"; Scaffold003 rebuild transcript 4236642 4237956 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold003 rebuild exon 4236642 4236842 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4236976 4237025 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4237100 4237171 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4237241 4237288 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4237359 4237414 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4237508 4237622 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4237705 4237803 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild exon 4237860 4237956 . - . gene_id "RvY_07975"; transcript_id "RvY_07975.1"; Scaffold003 rebuild transcript 4238632 4259828 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; gene_name "HUWE1"; annotation "E3 ubiquitin-protein ligase HUWE1"; Pfam "[UBA] UBA/TS-N domain|[DUF4414]|[DUF913] Domain of Unknown Function (DUF913)|[DUF908] Domain of Unknown Function (DUF908)|[WWE]|[HECT] HECT-domain (ubiquitin-transferase)"; CDD "Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10592"; similar_genes "HUWE1_RAT(e-value:2.0e-96;bit-score:349.0)"; Scaffold003 rebuild exon 4238632 4238734 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4239024 4239214 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4239281 4239426 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4239485 4239744 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4239810 4240137 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4240381 4240728 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4240965 4241447 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4241663 4241850 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4241910 4242297 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4242372 4242668 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4242809 4243124 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4243382 4244118 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4244417 4244708 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4244898 4245226 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4245487 4245680 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4245746 4246038 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4246190 4246582 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4246643 4246968 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4247282 4247678 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4247976 4248326 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4248560 4248943 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4249333 4249566 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4249749 4250177 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4250244 4250540 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4250797 4251345 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4251731 4252111 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4252273 4252754 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4252917 4253250 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4253449 4253658 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4253828 4254598 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4254945 4255370 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4255581 4255859 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4255923 4256192 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4256423 4256610 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4256869 4257148 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4257502 4257603 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4257674 4257991 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4258264 4258464 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4258527 4258781 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4258870 4258948 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4259073 4259233 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4259363 4259482 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4259562 4259666 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild exon 4259784 4259828 . - . gene_id "RvY_07976"; transcript_id "RvY_07976.1"; Scaffold003 rebuild transcript 4260828 4261313 . + . gene_id "RvY_07977"; transcript_id "RvY_07977.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4260828 4260941 . + . gene_id "RvY_07977"; transcript_id "RvY_07977.1"; Scaffold003 rebuild exon 4261039 4261078 . + . gene_id "RvY_07977"; transcript_id "RvY_07977.1"; Scaffold003 rebuild exon 4261162 4261313 . + . gene_id "RvY_07977"; transcript_id "RvY_07977.1"; Scaffold003 rebuild transcript 4261394 4261781 . + . gene_id "RvY_07978"; transcript_id "RvY_07978.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4261394 4261538 . + . gene_id "RvY_07978"; transcript_id "RvY_07978.1"; Scaffold003 rebuild exon 4261642 4261781 . + . gene_id "RvY_07978"; transcript_id "RvY_07978.1"; Scaffold003 rebuild transcript 4262687 4266012 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; gene_name "Arfaptin"; annotation "hypothetical protein."; Pfam "[Arfaptin] Arfaptin-like domain|[ICA69] Islet cell autoantigen ICA69, C-terminal domain"; CDD "Arfaptin-like domain. Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms an elongated, crescent-shaped dimer of three-helix coiled-coils. The N-terminal region of ICA69 is similar to arfaptin."; similar_genes "ICA1L_HUMAN(e-value:3.9e-25;bit-score:113.0)"; Scaffold003 rebuild exon 4262687 4262812 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4262889 4263163 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4263244 4263523 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4263716 4263946 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4264009 4264207 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4265395 4265518 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4265599 4265671 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4265746 4265932 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild exon 4266002 4266012 . - . gene_id "RvY_07979"; transcript_id "RvY_07979.1"; Scaffold003 rebuild transcript 4264756 4265007 . + . gene_id "RvY_07980"; transcript_id "RvY_07980.1"; annotation "putative Transcription elongation factor 1 homolog"; Pfam "[Elf1] Transcription elongation factor Elf1 like"; similar_genes "ELOF1_DROME(e-value:1.8e-27;bit-score:120.0)"; Scaffold003 rebuild exon 4264756 4265007 . + . gene_id "RvY_07980"; transcript_id "RvY_07980.1"; Scaffold003 rebuild transcript 4266923 4272862 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold003 rebuild exon 4266923 4267441 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4267684 4267977 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4268214 4269631 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4269897 4271928 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4272019 4272234 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4272369 4272492 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4272573 4272733 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild exon 4272824 4272862 . - . gene_id "RvY_07981"; transcript_id "RvY_07981.1"; Scaffold003 rebuild transcript 4273661 4274810 . - . gene_id "RvY_07982"; transcript_id "RvY_07982.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4273661 4274035 . - . gene_id "RvY_07982"; transcript_id "RvY_07982.1"; Scaffold003 rebuild exon 4274121 4274503 . - . gene_id "RvY_07982"; transcript_id "RvY_07982.1"; Scaffold003 rebuild exon 4274720 4274810 . - . gene_id "RvY_07982"; transcript_id "RvY_07982.1"; Scaffold003 rebuild transcript 4275582 4290182 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[C1-set] Immunoglobulin C1-set domain|[fn3] Fibronectin type III domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold003 rebuild exon 4275582 4276033 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4276380 4276751 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4276820 4276990 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4277076 4277369 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4277441 4277725 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4277804 4277958 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4278841 4279240 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4279472 4279630 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4279705 4279842 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4279981 4280641 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4280833 4281080 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4281274 4281345 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4281417 4281641 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4281708 4281970 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4282075 4282255 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4282354 4282536 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild exon 4290086 4290182 . - . gene_id "RvY_07983"; transcript_id "RvY_07983.1"; Scaffold003 rebuild transcript 4296162 4297751 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; gene_name "CHMP1"; annotation "Charged multivesicular body protein 1a"; Pfam "[Snf7]"; KO "K12197"; similar_genes "CHM1A_DANRE(e-value:3.8e-57;bit-score:219.0)"; Scaffold003 rebuild exon 4296162 4296186 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4296374 4296627 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4296698 4296766 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4296848 4296886 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4296991 4297098 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4297507 4297584 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4297650 4297669 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild exon 4297736 4297751 . - . gene_id "RvY_07984"; transcript_id "RvY_07984.1"; Scaffold003 rebuild transcript 4299573 4302291 . - . gene_id "RvY_07985"; transcript_id "RvY_07985.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold003 rebuild exon 4299573 4299931 . - . gene_id "RvY_07985"; transcript_id "RvY_07985.1"; Scaffold003 rebuild exon 4300113 4300527 . - . gene_id "RvY_07985"; transcript_id "RvY_07985.1"; Scaffold003 rebuild exon 4300722 4301411 . - . gene_id "RvY_07985"; transcript_id "RvY_07985.1"; Scaffold003 rebuild exon 4301713 4302291 . - . gene_id "RvY_07985"; transcript_id "RvY_07985.1"; Scaffold003 rebuild transcript 4303043 4304139 . + . gene_id "RvY_07986"; transcript_id "RvY_07986.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4303043 4303709 . + . gene_id "RvY_07986"; transcript_id "RvY_07986.1"; Scaffold003 rebuild exon 4303994 4304139 . + . gene_id "RvY_07986"; transcript_id "RvY_07986.1"; Scaffold003 rebuild transcript 4304248 4305785 . - . gene_id "RvY_07987"; transcript_id "RvY_07987.1"; gene_name "TSSK"; annotation "testis-specific serine kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08811"; similar_genes "TSSK4_MOUSE(e-value:1.4e-10;bit-score:64.0)"; Scaffold003 rebuild exon 4304248 4304519 . - . gene_id "RvY_07987"; transcript_id "RvY_07987.1"; Scaffold003 rebuild exon 4304800 4305360 . - . gene_id "RvY_07987"; transcript_id "RvY_07987.1"; Scaffold003 rebuild exon 4305437 4305785 . - . gene_id "RvY_07987"; transcript_id "RvY_07987.1"; Scaffold003 rebuild transcript 4304807 4305538 . + . gene_id "RvY_07988"; transcript_id "RvY_07988.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4304807 4305538 . + . gene_id "RvY_07988"; transcript_id "RvY_07988.1"; Scaffold003 rebuild transcript 4306134 4312022 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; gene_name "NR2E1"; annotation "putative Protein tailless"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TLX interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; KO "K08545"; similar_genes "TLL_DROVI(e-value:4.0e-44;bit-score:176.0)"; Scaffold003 rebuild exon 4306134 4306420 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild exon 4306500 4306682 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild exon 4306779 4306875 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild exon 4307104 4307555 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild exon 4307900 4308054 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild exon 4310635 4310716 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild exon 4311980 4312022 . - . gene_id "RvY_07989"; transcript_id "RvY_07989.1"; Scaffold003 rebuild transcript 4318412 4319644 . - . gene_id "RvY_07990"; transcript_id "RvY_07990.1"; annotation "hypothetical protein."; Pfam "[RWD]"; Scaffold003 rebuild exon 4318412 4318681 . - . gene_id "RvY_07990"; transcript_id "RvY_07990.1"; Scaffold003 rebuild exon 4318825 4318980 . - . gene_id "RvY_07990"; transcript_id "RvY_07990.1"; Scaffold003 rebuild exon 4319168 4319644 . - . gene_id "RvY_07990"; transcript_id "RvY_07990.1"; Scaffold003 rebuild transcript 4320303 4321608 . - . gene_id "RvY_07991"; transcript_id "RvY_07991.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4320303 4321091 . - . gene_id "RvY_07991"; transcript_id "RvY_07991.1"; Scaffold003 rebuild exon 4321214 4321251 . - . gene_id "RvY_07991"; transcript_id "RvY_07991.1"; Scaffold003 rebuild exon 4321410 4321608 . - . gene_id "RvY_07991"; transcript_id "RvY_07991.1"; Scaffold003 rebuild transcript 4322874 4323519 . - . gene_id "RvY_07992"; transcript_id "RvY_07992.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4322874 4323012 . - . gene_id "RvY_07992"; transcript_id "RvY_07992.1"; Scaffold003 rebuild exon 4323245 4323519 . - . gene_id "RvY_07992"; transcript_id "RvY_07992.1"; Scaffold003 rebuild transcript 4324727 4325080 . + . gene_id "RvY_07993"; transcript_id "RvY_07993.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4324727 4325080 . + . gene_id "RvY_07993"; transcript_id "RvY_07993.1"; Scaffold003 rebuild transcript 4325282 4329963 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; gene_name "(1)MSH4"; annotation "(1)DNA mismatch repair protein MSH4(2)hypothetical protein."; Pfam "[MutS_III] MutS domain III|[MutS_II] MutS domain II|(1)[MutS_V] MutS domain V|(1)[MutS_IV] MutS family domain IV"; CDD "(1)Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]"; KO "(1)K08740"; similar_genes "(1)MUTS_XANAC(e-value:1.1e-22;bit-score:104.0)(2)MSH4_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold003 rebuild exon 4325282 4325380 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4325464 4325764 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4325869 4326017 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4326116 4326312 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4326405 4326526 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4326588 4326865 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4327058 4327318 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4327394 4327460 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4327636 4327833 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4327908 4327953 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4328018 4328142 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4328212 4328306 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4328396 4328443 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4328519 4328686 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4328777 4328849 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4328913 4329048 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4329111 4329303 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild exon 4329556 4329963 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.1"; Scaffold003 rebuild transcript 4325282 4327510 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; gene_name "(1)MSH4"; annotation "(1)DNA mismatch repair protein MSH4(2)hypothetical protein."; Pfam "[MutS_III] MutS domain III|[MutS_II] MutS domain II|(1)[MutS_V] MutS domain V|(1)[MutS_IV] MutS family domain IV"; CDD "(1)Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]"; KO "(1)K08740"; similar_genes "(1)MUTS_XANAC(e-value:1.1e-22;bit-score:104.0)(2)MSH4_HUMAN(e-value:5.1e-06;bit-score:49.0)"; Scaffold003 rebuild exon 4325282 4325380 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4325464 4325764 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4325869 4326017 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4326116 4326312 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4326405 4326526 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4326588 4326865 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4327058 4327318 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild exon 4327394 4327510 . + . gene_id "RvY_07994"; transcript_id "RvY_07994.2"; Scaffold003 rebuild transcript 4330944 4331354 . - . gene_id "RvY_07995"; transcript_id "RvY_07995.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4330944 4330986 . - . gene_id "RvY_07995"; transcript_id "RvY_07995.1"; Scaffold003 rebuild exon 4331065 4331354 . - . gene_id "RvY_07995"; transcript_id "RvY_07995.1"; Scaffold003 rebuild transcript 4332177 4335241 . - . gene_id "RvY_07996"; transcript_id "RvY_07996.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4332177 4333061 . - . gene_id "RvY_07996"; transcript_id "RvY_07996.1"; Scaffold003 rebuild exon 4333335 4333807 . - . gene_id "RvY_07996"; transcript_id "RvY_07996.1"; Scaffold003 rebuild exon 4334036 4334537 . - . gene_id "RvY_07996"; transcript_id "RvY_07996.1"; Scaffold003 rebuild exon 4334813 4335241 . - . gene_id "RvY_07996"; transcript_id "RvY_07996.1"; Scaffold003 rebuild transcript 4336079 4339064 . - . gene_id "RvY_07997"; transcript_id "RvY_07997.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; KO "K14613"; Scaffold003 rebuild exon 4336079 4336477 . - . gene_id "RvY_07997"; transcript_id "RvY_07997.1"; Scaffold003 rebuild exon 4337268 4337434 . - . gene_id "RvY_07997"; transcript_id "RvY_07997.1"; Scaffold003 rebuild exon 4337698 4338243 . - . gene_id "RvY_07997"; transcript_id "RvY_07997.1"; Scaffold003 rebuild exon 4338608 4338770 . - . gene_id "RvY_07997"; transcript_id "RvY_07997.1"; Scaffold003 rebuild exon 4338849 4339064 . - . gene_id "RvY_07997"; transcript_id "RvY_07997.1"; Scaffold003 rebuild transcript 4339289 4341578 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4339289 4339316 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.1"; Scaffold003 rebuild exon 4339656 4340004 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.1"; Scaffold003 rebuild exon 4341062 4341406 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.1"; Scaffold003 rebuild exon 4341476 4341578 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.1"; Scaffold003 rebuild transcript 4339652 4341578 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4339652 4340004 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.2"; Scaffold003 rebuild exon 4341062 4341406 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.2"; Scaffold003 rebuild exon 4341476 4341578 . - . gene_id "RvY_07998"; transcript_id "RvY_07998.2"; Scaffold003 rebuild transcript 4341733 4342246 . - . gene_id "RvY_07999"; transcript_id "RvY_07999.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4341733 4341842 . - . gene_id "RvY_07999"; transcript_id "RvY_07999.1"; Scaffold003 rebuild exon 4342162 4342246 . - . gene_id "RvY_07999"; transcript_id "RvY_07999.1"; Scaffold003 rebuild transcript 4342582 4345421 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[Cupin_8] Cupin-like domain|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold003 rebuild exon 4342582 4342728 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4342789 4343168 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4343385 4343487 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4343569 4343823 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4344039 4344117 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4344259 4344396 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4344654 4344985 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild exon 4345167 4345421 . - . gene_id "RvY_08000"; transcript_id "RvY_08000.1"; Scaffold003 rebuild transcript 4346292 4348234 . - . gene_id "RvY_08001"; transcript_id "RvY_08001.1"; gene_name "SMC_prok_A"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent."; Scaffold003 rebuild exon 4346292 4347355 . - . gene_id "RvY_08001"; transcript_id "RvY_08001.1"; Scaffold003 rebuild exon 4347460 4348089 . - . gene_id "RvY_08001"; transcript_id "RvY_08001.1"; Scaffold003 rebuild exon 4348147 4348234 . - . gene_id "RvY_08001"; transcript_id "RvY_08001.1"; Scaffold003 rebuild transcript 4348657 4352650 . + . gene_id "RvY_08002"; transcript_id "RvY_08002.1"; gene_name "INTS8"; annotation "integrator complex subunit 8"; KO "K13145"; Scaffold003 rebuild exon 4348657 4348795 . + . gene_id "RvY_08002"; transcript_id "RvY_08002.1"; Scaffold003 rebuild exon 4348860 4349620 . + . gene_id "RvY_08002"; transcript_id "RvY_08002.1"; Scaffold003 rebuild exon 4349866 4351143 . + . gene_id "RvY_08002"; transcript_id "RvY_08002.1"; Scaffold003 rebuild exon 4351464 4351977 . + . gene_id "RvY_08002"; transcript_id "RvY_08002.1"; Scaffold003 rebuild exon 4352169 4352650 . + . gene_id "RvY_08002"; transcript_id "RvY_08002.1"; Scaffold003 rebuild transcript 4354037 4357935 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4354037 4354690 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4354755 4354934 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4355014 4355156 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4355237 4355357 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4355424 4355595 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4355805 4355923 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4356001 4356123 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4356193 4356353 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4356442 4356497 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4356561 4356641 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4356747 4356820 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild exon 4356886 4357935 . + . gene_id "RvY_08003"; transcript_id "RvY_08003.1"; Scaffold003 rebuild transcript 4358421 4359894 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; annotation "hypothetical protein."; Pfam "[PQ-loop] PQ loop repeat"; similar_genes "PQLC1_BOVIN(e-value:4.4e-24;bit-score:109.0)"; Scaffold003 rebuild exon 4358421 4358628 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; Scaffold003 rebuild exon 4358698 4358914 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; Scaffold003 rebuild exon 4359204 4359340 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; Scaffold003 rebuild exon 4359411 4359526 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; Scaffold003 rebuild exon 4359595 4359735 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; Scaffold003 rebuild exon 4359820 4359894 . - . gene_id "RvY_08004"; transcript_id "RvY_08004.1"; Scaffold003 rebuild transcript 4360649 4364386 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4360649 4361181 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4361400 4361520 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4361596 4361767 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4361856 4361968 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4362075 4362358 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4362526 4362671 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4362743 4362816 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4362905 4363521 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild exon 4363840 4364386 . + . gene_id "RvY_08005"; transcript_id "RvY_08005.1"; Scaffold003 rebuild transcript 4364975 4366989 . - . gene_id "RvY_08006"; transcript_id "RvY_08006.1"; gene_name "PIGZ"; annotation "phosphatidylinositol glycan, class Z [EC:2.4.1.-]"; Pfam "[Glyco_transf_22] Alg9-like mannosyltransferase family"; CDD "Alg9-like mannosyltransferase family. Members of this family are mannosyltransferase enzymes. At least some members are localized in endoplasmic reticulum and involved in GPI anchor biosynthesis."; EC "EC2.4.1.-"; KO "K08098"; similar_genes "PIGZ_MOUSE(e-value:4.6e-11;bit-score:66.0)"; Scaffold003 rebuild exon 4364975 4365199 . - . gene_id "RvY_08006"; transcript_id "RvY_08006.1"; Scaffold003 rebuild exon 4365283 4365954 . - . gene_id "RvY_08006"; transcript_id "RvY_08006.1"; Scaffold003 rebuild exon 4366290 4366798 . - . gene_id "RvY_08006"; transcript_id "RvY_08006.1"; Scaffold003 rebuild exon 4366857 4366989 . - . gene_id "RvY_08006"; transcript_id "RvY_08006.1"; Scaffold003 rebuild transcript 4367684 4369399 . + . gene_id "RvY_08007"; transcript_id "RvY_08007.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4367684 4367777 . + . gene_id "RvY_08007"; transcript_id "RvY_08007.1"; Scaffold003 rebuild exon 4368003 4368207 . + . gene_id "RvY_08007"; transcript_id "RvY_08007.1"; Scaffold003 rebuild exon 4368297 4368565 . + . gene_id "RvY_08007"; transcript_id "RvY_08007.1"; Scaffold003 rebuild exon 4368768 4368950 . + . gene_id "RvY_08007"; transcript_id "RvY_08007.1"; Scaffold003 rebuild exon 4369011 4369399 . + . gene_id "RvY_08007"; transcript_id "RvY_08007.1"; Scaffold003 rebuild transcript 4368055 4368495 . - . gene_id "RvY_08008"; transcript_id "RvY_08008.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4368055 4368140 . - . gene_id "RvY_08008"; transcript_id "RvY_08008.1"; Scaffold003 rebuild exon 4368279 4368495 . - . gene_id "RvY_08008"; transcript_id "RvY_08008.1"; Scaffold003 rebuild transcript 4369760 4371643 . - . gene_id "RvY_08009"; transcript_id "RvY_08009.1"; gene_name "DNAJC16"; annotation "DnaJ homolog subfamily C member 16"; Pfam "[DnaJ]"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; KO "K09536"; similar_genes "DNAJ1_NOCFA(e-value:6.9e-12;bit-score:69.0)"; Scaffold003 rebuild exon 4369760 4369826 . - . gene_id "RvY_08009"; transcript_id "RvY_08009.1"; Scaffold003 rebuild exon 4370029 4370403 . - . gene_id "RvY_08009"; transcript_id "RvY_08009.1"; Scaffold003 rebuild exon 4370680 4371230 . - . gene_id "RvY_08009"; transcript_id "RvY_08009.1"; Scaffold003 rebuild exon 4371302 4371368 . - . gene_id "RvY_08009"; transcript_id "RvY_08009.1"; Scaffold003 rebuild exon 4371489 4371643 . - . gene_id "RvY_08009"; transcript_id "RvY_08009.1"; Scaffold003 rebuild transcript 4375518 4377463 . + . gene_id "RvY_08010"; transcript_id "RvY_08010.1"; product "HR48/HR96"; gene_name "NR_LBD_F1"; annotation "HR48/HR96 | hypothetical protein."; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; KO "K14035"; similar_genes "NHR8_CAEEL(e-value:1.6e-15;bit-score:81.0)"; Scaffold003 rebuild exon 4375518 4375709 . + . gene_id "RvY_08010"; transcript_id "RvY_08010.1"; Scaffold003 rebuild exon 4375927 4376424 . + . gene_id "RvY_08010"; transcript_id "RvY_08010.1"; Scaffold003 rebuild exon 4376495 4376534 . + . gene_id "RvY_08010"; transcript_id "RvY_08010.1"; Scaffold003 rebuild exon 4376725 4376766 . + . gene_id "RvY_08010"; transcript_id "RvY_08010.1"; Scaffold003 rebuild exon 4376868 4377463 . + . gene_id "RvY_08010"; transcript_id "RvY_08010.1"; Scaffold003 rebuild transcript 4384308 4386256 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4384308 4384419 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild exon 4384499 4384585 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild exon 4384909 4385153 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild exon 4385215 4385384 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild exon 4385462 4385545 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild exon 4385685 4385792 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild exon 4386040 4386256 . + . gene_id "RvY_08011"; transcript_id "RvY_08011.1"; Scaffold003 rebuild transcript 4388408 4391480 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; gene_name "Piwi_piwi-like_Euk"; annotation "hypothetical protein."; Pfam "[Piwi]"; CDD "Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; similar_genes "PIWL1_HUMAN(e-value:3.0e-25;bit-score:113.0)"; Scaffold003 rebuild exon 4388408 4388532 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4388666 4388777 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4388985 4389184 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4389250 4389325 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4389525 4389600 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4389724 4389842 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4390126 4390327 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4390396 4390461 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4390740 4390827 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4390911 4391024 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4391130 4391277 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild exon 4391364 4391480 . + . gene_id "RvY_08012"; transcript_id "RvY_08012.1"; Scaffold003 rebuild transcript 4391959 4393634 . - . gene_id "RvY_08013"; transcript_id "RvY_08013.1"; gene_name "SRRM2"; annotation "serine/arginine repetitive matrix protein 2"; Pfam "[cwf21]"; CDD "transcription termination factor Rho; Provisional"; KO "K13172"; similar_genes "SRRM2_MOUSE(e-value:6.6e-06;bit-score:49.0)"; Scaffold003 rebuild exon 4391959 4392272 . - . gene_id "RvY_08013"; transcript_id "RvY_08013.1"; Scaffold003 rebuild exon 4392426 4392831 . - . gene_id "RvY_08013"; transcript_id "RvY_08013.1"; Scaffold003 rebuild exon 4393098 4393634 . - . gene_id "RvY_08013"; transcript_id "RvY_08013.1"; Scaffold003 rebuild transcript 4394172 4394768 . + . gene_id "RvY_08014"; transcript_id "RvY_08014.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4394172 4394768 . + . gene_id "RvY_08014"; transcript_id "RvY_08014.1"; Scaffold003 rebuild transcript 4399823 4400260 . + . gene_id "RvY_08015"; transcript_id "RvY_08015.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4399823 4400063 . + . gene_id "RvY_08015"; transcript_id "RvY_08015.1"; Scaffold003 rebuild exon 4400175 4400260 . + . gene_id "RvY_08015"; transcript_id "RvY_08015.1"; Scaffold003 rebuild transcript 4402017 4403281 . - . gene_id "RvY_08016"; transcript_id "RvY_08016.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4402017 4402171 . - . gene_id "RvY_08016"; transcript_id "RvY_08016.1"; Scaffold003 rebuild exon 4403257 4403281 . - . gene_id "RvY_08016"; transcript_id "RvY_08016.1"; Scaffold003 rebuild transcript 4406788 4411528 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; annotation "hypothetical protein."; Pfam "[TIR_2] TIR domain"; Scaffold003 rebuild exon 4406788 4406941 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4407008 4407161 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4407236 4407324 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4407424 4407533 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4407632 4407924 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4407985 4408292 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4408490 4408609 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4408667 4408708 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4408792 4408982 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4409059 4409181 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4409393 4409704 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4409769 4409870 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4410037 4410156 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4410226 4410320 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4410385 4410565 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4410796 4410937 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4411018 4411133 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild exon 4411241 4411528 . + . gene_id "RvY_08017"; transcript_id "RvY_08017.1"; Scaffold003 rebuild transcript 4412042 4414237 . - . gene_id "RvY_08018"; transcript_id "RvY_08018.1"; gene_name "SHC"; annotation "src homology 2 domain-containing transforming protein C"; Pfam "[SH2]|[PID] Phosphotyrosine interaction domain (PTB/PID)"; CDD "SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; KO "K06279"; Scaffold003 rebuild exon 4412042 4412415 . - . gene_id "RvY_08018"; transcript_id "RvY_08018.1"; Scaffold003 rebuild exon 4412715 4412969 . - . gene_id "RvY_08018"; transcript_id "RvY_08018.1"; Scaffold003 rebuild exon 4413143 4413590 . - . gene_id "RvY_08018"; transcript_id "RvY_08018.1"; Scaffold003 rebuild exon 4413884 4414237 . - . gene_id "RvY_08018"; transcript_id "RvY_08018.1"; Scaffold003 rebuild transcript 4415262 4416931 . - . gene_id "RvY_08019"; transcript_id "RvY_08019.1"; gene_name "KLHL10"; annotation "kelch-like protein 10"; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "Kelch domain."; KO "K10448"; similar_genes "KLH10_HUMAN(e-value:1.0e-10;bit-score:65.0)"; Scaffold003 rebuild exon 4415262 4415566 . - . gene_id "RvY_08019"; transcript_id "RvY_08019.1"; Scaffold003 rebuild exon 4415777 4415825 . - . gene_id "RvY_08019"; transcript_id "RvY_08019.1"; Scaffold003 rebuild exon 4415892 4416142 . - . gene_id "RvY_08019"; transcript_id "RvY_08019.1"; Scaffold003 rebuild exon 4416411 4416542 . - . gene_id "RvY_08019"; transcript_id "RvY_08019.1"; Scaffold003 rebuild exon 4416619 4416931 . - . gene_id "RvY_08019"; transcript_id "RvY_08019.1"; Scaffold003 rebuild transcript 4417286 4424756 . - . gene_id "RvY_08020"; transcript_id "RvY_08020.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold003 rebuild exon 4417286 4417626 . - . gene_id "RvY_08020"; transcript_id "RvY_08020.1"; Scaffold003 rebuild exon 4418085 4418574 . - . gene_id "RvY_08020"; transcript_id "RvY_08020.1"; Scaffold003 rebuild exon 4424721 4424756 . - . gene_id "RvY_08020"; transcript_id "RvY_08020.1"; Scaffold003 rebuild transcript 4421337 4425859 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; gene_name "CHRNA10"; annotation "putative Neuronal acetylcholine receptor subunit alpha-7"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K04811"; similar_genes "ACHA7_MOUSE(e-value:1.8e-31;bit-score:134.0)"; Scaffold003 rebuild exon 4421337 4421394 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4422686 4422867 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4423795 4423844 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4423919 4424023 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4424279 4424445 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4424525 4424668 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4424735 4424959 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild exon 4425111 4425859 . + . gene_id "RvY_08021"; transcript_id "RvY_08021.1"; Scaffold003 rebuild transcript 4425305 4425831 . - . gene_id "RvY_08022"; transcript_id "RvY_08022.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4425305 4425402 . - . gene_id "RvY_08022"; transcript_id "RvY_08022.1"; Scaffold003 rebuild exon 4425484 4425631 . - . gene_id "RvY_08022"; transcript_id "RvY_08022.1"; Scaffold003 rebuild exon 4425766 4425831 . - . gene_id "RvY_08022"; transcript_id "RvY_08022.1"; Scaffold003 rebuild transcript 4426517 4427705 . + . gene_id "RvY_08023"; transcript_id "RvY_08023.1"; annotation "hypothetical protein."; Pfam "[Scs3p] Inositol phospholipid synthesis and fat-storage-inducing TM"; Scaffold003 rebuild exon 4426517 4427092 . + . gene_id "RvY_08023"; transcript_id "RvY_08023.1"; Scaffold003 rebuild exon 4427295 4427705 . + . gene_id "RvY_08023"; transcript_id "RvY_08023.1"; Scaffold003 rebuild transcript 4428063 4428457 . - . gene_id "RvY_08024"; transcript_id "RvY_08024.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4428063 4428298 . - . gene_id "RvY_08024"; transcript_id "RvY_08024.1"; Scaffold003 rebuild exon 4428370 4428457 . - . gene_id "RvY_08024"; transcript_id "RvY_08024.1"; Scaffold003 rebuild transcript 4429136 4430414 . - . gene_id "RvY_08025"; transcript_id "RvY_08025.1"; gene_name "PRRX"; annotation "paired mesoderm homeobox protein"; Pfam "[Homeobox]"; KO "K09329"; similar_genes "PRRX2_MOUSE(e-value:1.0e-23;bit-score:108.0)"; Scaffold003 rebuild exon 4429136 4429480 . - . gene_id "RvY_08025"; transcript_id "RvY_08025.1"; Scaffold003 rebuild exon 4429896 4430203 . - . gene_id "RvY_08025"; transcript_id "RvY_08025.1"; Scaffold003 rebuild exon 4430369 4430414 . - . gene_id "RvY_08025"; transcript_id "RvY_08025.1"; Scaffold003 rebuild transcript 4431484 4431895 . - . gene_id "RvY_08026"; transcript_id "RvY_08026.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4431484 4431658 . - . gene_id "RvY_08026"; transcript_id "RvY_08026.1"; Scaffold003 rebuild exon 4431744 4431895 . - . gene_id "RvY_08026"; transcript_id "RvY_08026.1"; Scaffold003 rebuild transcript 4431904 4432388 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4431904 4431977 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.1"; Scaffold003 rebuild exon 4432052 4432166 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.1"; Scaffold003 rebuild exon 4432233 4432388 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.1"; Scaffold003 rebuild transcript 4432002 4432388 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4432002 4432166 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.2"; Scaffold003 rebuild exon 4432233 4432388 . - . gene_id "RvY_08027"; transcript_id "RvY_08027.2"; Scaffold003 rebuild transcript 4433437 4437977 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats"; similar_genes "K1468_DANRE(e-value:5.5e-18;bit-score:89.0)"; Scaffold003 rebuild exon 4433437 4433720 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4433927 4434519 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4434581 4435335 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4435455 4435667 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4435728 4436035 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4436313 4436465 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4436546 4436703 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild exon 4437103 4437977 . + . gene_id "RvY_08028"; transcript_id "RvY_08028.1"; Scaffold003 rebuild transcript 4439122 4443416 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; gene_name "GCLC"; annotation "putative Glutamate--cysteine ligase catalytic subunit"; Pfam "[GCS] Glutamate-cysteine ligase"; EC "EC6.3.2.2"; KO "K11204"; similar_genes "GSH1_HUMAN(e-value:3.6e-49;bit-score:192.0)"; Scaffold003 rebuild exon 4439122 4439271 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4439391 4439506 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4439674 4439874 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4440097 4440216 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4440368 4440426 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4440702 4440844 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4440926 4441000 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4441406 4441522 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4441672 4441810 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4441902 4442014 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4442089 4442181 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4442456 4442642 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4442722 4442937 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild exon 4443094 4443416 . + . gene_id "RvY_08029"; transcript_id "RvY_08029.1"; Scaffold003 rebuild transcript 4443824 4445320 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; gene_name "pepE"; annotation "putative Alpha-aspartyl dipeptidase"; Pfam "[Peptidase_S51] Peptidase family S51"; CDD "peptidase E; Validated"; EC "EC3.4.13.21"; KO "K05995"; similar_genes "PEPE_XENLA(e-value:8.1e-49;bit-score:191.0)"; Scaffold003 rebuild exon 4443824 4444021 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; Scaffold003 rebuild exon 4444296 4444355 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; Scaffold003 rebuild exon 4444474 4444647 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; Scaffold003 rebuild exon 4444711 4444790 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; Scaffold003 rebuild exon 4444942 4445111 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; Scaffold003 rebuild exon 4445169 4445320 . - . gene_id "RvY_08030"; transcript_id "RvY_08030.1"; Scaffold003 rebuild transcript 4451411 4454736 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; gene_name "(1)GPR83"; annotation "(1)G protein-coupled receptor 83(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04210"; similar_genes "(1)NPFF1_HUMAN(e-value:1.0e-08;bit-score:58.0)"; Scaffold003 rebuild exon 4451411 4451727 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; Scaffold003 rebuild exon 4452029 4452240 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; Scaffold003 rebuild exon 4453123 4453284 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; Scaffold003 rebuild exon 4453523 4453701 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; Scaffold003 rebuild exon 4454034 4454231 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; Scaffold003 rebuild exon 4454425 4454736 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.1"; Scaffold003 rebuild transcript 4453397 4454736 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.2"; gene_name "(1)GPR83"; annotation "(1)G protein-coupled receptor 83(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04210"; similar_genes "(1)NPFF1_HUMAN(e-value:1.0e-08;bit-score:58.0)"; Scaffold003 rebuild exon 4453397 4453701 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.2"; Scaffold003 rebuild exon 4454034 4454136 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.2"; Scaffold003 rebuild exon 4454425 4454736 . - . gene_id "RvY_08031"; transcript_id "RvY_08031.2"; Scaffold003 rebuild transcript 4455549 4455758 . + . gene_id "RvY_08032"; transcript_id "RvY_08032.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4455549 4455581 . + . gene_id "RvY_08032"; transcript_id "RvY_08032.1"; Scaffold003 rebuild exon 4455642 4455758 . + . gene_id "RvY_08032"; transcript_id "RvY_08032.1"; Scaffold003 rebuild transcript 4457499 4460910 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; annotation "putative WD repeat domain phosphoinositide-interacting protein 4"; Pfam "[WD40] WD domain, G-beta repeat"; similar_genes "WIPI4_DANRE(e-value:8.9e-27;bit-score:118.0)"; Scaffold003 rebuild exon 4457499 4457605 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4457685 4457812 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4459284 4459471 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4459573 4459683 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4459741 4459820 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4459904 4459998 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4460059 4460146 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4460495 4460599 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4460667 4460741 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild exon 4460862 4460910 . - . gene_id "RvY_08033"; transcript_id "RvY_08033.1"; Scaffold003 rebuild transcript 4461459 4462009 . - . gene_id "RvY_08034"; transcript_id "RvY_08034.1"; gene_name "CHD"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide."; Scaffold003 rebuild exon 4461459 4461524 . - . gene_id "RvY_08034"; transcript_id "RvY_08034.1"; Scaffold003 rebuild exon 4461581 4462009 . - . gene_id "RvY_08034"; transcript_id "RvY_08034.1"; Scaffold003 rebuild transcript 4462223 4465526 . - . gene_id "RvY_08035"; transcript_id "RvY_08035.1"; gene_name "pstS"; annotation "phosphate transport system substrate-binding protein"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[PBP_like_2] PBP superfamily domain"; CDD "phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins."; KO "K02040"; Scaffold003 rebuild exon 4462223 4463182 . - . gene_id "RvY_08035"; transcript_id "RvY_08035.1"; Scaffold003 rebuild exon 4463553 4464353 . - . gene_id "RvY_08035"; transcript_id "RvY_08035.1"; Scaffold003 rebuild exon 4464649 4464791 . - . gene_id "RvY_08035"; transcript_id "RvY_08035.1"; Scaffold003 rebuild exon 4464855 4465132 . - . gene_id "RvY_08035"; transcript_id "RvY_08035.1"; Scaffold003 rebuild exon 4465207 4465526 . - . gene_id "RvY_08035"; transcript_id "RvY_08035.1"; Scaffold003 rebuild transcript 4466626 4468884 . - . gene_id "RvY_08036"; transcript_id "RvY_08036.1"; annotation "putative Glycine-rich cell wall structural protein"; similar_genes "GRP1_HORVU(e-value:1.0e-27;bit-score:121.0)"; Scaffold003 rebuild exon 4466626 4467305 . - . gene_id "RvY_08036"; transcript_id "RvY_08036.1"; Scaffold003 rebuild exon 4467388 4467621 . - . gene_id "RvY_08036"; transcript_id "RvY_08036.1"; Scaffold003 rebuild exon 4467984 4468884 . - . gene_id "RvY_08036"; transcript_id "RvY_08036.1"; Scaffold003 rebuild transcript 4471447 4472339 . - . gene_id "RvY_08037"; transcript_id "RvY_08037.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4471447 4471515 . - . gene_id "RvY_08037"; transcript_id "RvY_08037.1"; Scaffold003 rebuild exon 4471593 4471661 . - . gene_id "RvY_08037"; transcript_id "RvY_08037.1"; Scaffold003 rebuild exon 4471765 4471875 . - . gene_id "RvY_08037"; transcript_id "RvY_08037.1"; Scaffold003 rebuild exon 4472051 4472194 . - . gene_id "RvY_08037"; transcript_id "RvY_08037.1"; Scaffold003 rebuild exon 4472277 4472339 . - . gene_id "RvY_08037"; transcript_id "RvY_08037.1"; Scaffold003 rebuild transcript 4473911 4474120 . + . gene_id "RvY_08038"; transcript_id "RvY_08038.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4473911 4474120 . + . gene_id "RvY_08038"; transcript_id "RvY_08038.1"; Scaffold003 rebuild transcript 4474120 4476784 . + . gene_id "RvY_08039"; transcript_id "RvY_08039.1"; gene_name "Ras_dva"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; similar_genes "RSR1_CANAL(e-value:1.2e-07;bit-score:55.0)"; Scaffold003 rebuild exon 4474120 4474342 . + . gene_id "RvY_08039"; transcript_id "RvY_08039.1"; Scaffold003 rebuild exon 4475106 4475151 . + . gene_id "RvY_08039"; transcript_id "RvY_08039.1"; Scaffold003 rebuild exon 4475473 4475830 . + . gene_id "RvY_08039"; transcript_id "RvY_08039.1"; Scaffold003 rebuild exon 4476374 4476452 . + . gene_id "RvY_08039"; transcript_id "RvY_08039.1"; Scaffold003 rebuild exon 4476519 4476784 . + . gene_id "RvY_08039"; transcript_id "RvY_08039.1"; Scaffold003 rebuild transcript 4476928 4477410 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4476928 4477089 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.1"; Scaffold003 rebuild exon 4477237 4477410 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.1"; Scaffold003 rebuild transcript 4475536 4475784 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4475536 4475784 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.2"; Scaffold003 rebuild transcript 4477162 4477410 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4477162 4477410 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.3"; Scaffold003 rebuild transcript 4475700 4477410 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4475700 4475738 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.4"; Scaffold003 rebuild exon 4477237 4477410 . - . gene_id "RvY_08040"; transcript_id "RvY_08040.4"; Scaffold003 rebuild transcript 4478217 4479304 . + . gene_id "RvY_08041"; transcript_id "RvY_08041.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4478217 4478334 . + . gene_id "RvY_08041"; transcript_id "RvY_08041.1"; Scaffold003 rebuild exon 4478406 4478597 . + . gene_id "RvY_08041"; transcript_id "RvY_08041.1"; Scaffold003 rebuild exon 4478724 4479003 . + . gene_id "RvY_08041"; transcript_id "RvY_08041.1"; Scaffold003 rebuild exon 4479211 4479304 . + . gene_id "RvY_08041"; transcript_id "RvY_08041.1"; Scaffold003 rebuild transcript 4481951 4482439 . - . gene_id "RvY_08042"; transcript_id "RvY_08042.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4481951 4482439 . - . gene_id "RvY_08042"; transcript_id "RvY_08042.1"; Scaffold003 rebuild transcript 4484082 4484410 . + . gene_id "RvY_08043"; transcript_id "RvY_08043.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4484082 4484192 . + . gene_id "RvY_08043"; transcript_id "RvY_08043.1"; Scaffold003 rebuild exon 4484237 4484410 . + . gene_id "RvY_08043"; transcript_id "RvY_08043.1"; Scaffold003 rebuild transcript 4488366 4488704 . - . gene_id "RvY_08044"; transcript_id "RvY_08044.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold003 rebuild exon 4488366 4488704 . - . gene_id "RvY_08044"; transcript_id "RvY_08044.1"; Scaffold003 rebuild transcript 4489059 4489244 . - . gene_id "RvY_08045"; transcript_id "RvY_08045.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4489059 4489244 . - . gene_id "RvY_08045"; transcript_id "RvY_08045.1"; Scaffold003 rebuild transcript 4489904 4493052 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4489904 4489989 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4490072 4490520 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4490603 4490705 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4490833 4491189 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4491247 4491415 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4491478 4491627 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4491721 4492037 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4492241 4492539 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild exon 4492748 4493052 . + . gene_id "RvY_08046"; transcript_id "RvY_08046.1"; Scaffold003 rebuild transcript 4493971 4495133 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; gene_name "RP-S7"; annotation "small subunit ribosomal protein S7"; Pfam "[Ribosomal_S7] Ribosomal protein S7p/S5e"; CDD "30S ribosomal protein S7; Validated"; KO "K02992"; similar_genes "RT07_DANRE(e-value:4.5e-09;bit-score:59.0)"; Scaffold003 rebuild exon 4493971 4494089 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; Scaffold003 rebuild exon 4494168 4494362 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; Scaffold003 rebuild exon 4494435 4494498 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; Scaffold003 rebuild exon 4494613 4494783 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; Scaffold003 rebuild exon 4494851 4494988 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; Scaffold003 rebuild exon 4495050 4495133 . + . gene_id "RvY_08047"; transcript_id "RvY_08047.1"; Scaffold003 rebuild transcript 4495748 4497611 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; gene_name "HLCS"; annotation "biotin--protein ligase [EC:6.3.4.9 6.3.4.10 6.3.4.11 6.3.4.15]"; Pfam "[BPL_C] Biotin protein ligase C terminal domain|[BPL_LplA_LipB] Biotin/lipoate A/B protein ligase family"; CDD "Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]"; EC "EC6.3.4.10|EC6.3.4.11|EC6.3.4.15|EC6.3.4.9"; KO "K01942"; Scaffold003 rebuild exon 4495748 4495943 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild exon 4496157 4496370 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild exon 4496449 4496563 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild exon 4496641 4496801 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild exon 4496875 4496942 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild exon 4497178 4497485 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild exon 4497573 4497611 . - . gene_id "RvY_08048"; transcript_id "RvY_08048.1"; Scaffold003 rebuild transcript 4498320 4498871 . - . gene_id "RvY_08049"; transcript_id "RvY_08049.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4498320 4498871 . - . gene_id "RvY_08049"; transcript_id "RvY_08049.1"; Scaffold003 rebuild transcript 4499419 4504757 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "CAPAR_DROME(e-value:4.2e-18;bit-score:89.0)"; Scaffold003 rebuild exon 4499419 4499446 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4499537 4500150 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4500354 4500379 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4500450 4500525 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4500604 4500653 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4502779 4503015 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4503250 4503476 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4503830 4503948 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4504070 4504209 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild exon 4504493 4504757 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.1"; Scaffold003 rebuild transcript 4499521 4504757 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "CAPAR_DROME(e-value:4.2e-18;bit-score:89.0)"; Scaffold003 rebuild exon 4499521 4500150 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4500354 4500379 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4500450 4500525 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4500604 4500653 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4502779 4503015 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4503250 4503476 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4503830 4503948 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4504070 4504209 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild exon 4504493 4504757 . - . gene_id "RvY_08050"; transcript_id "RvY_08050.2"; Scaffold003 rebuild transcript 4502864 4503046 . + . gene_id "RvY_08051"; transcript_id "RvY_08051.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4502864 4503046 . + . gene_id "RvY_08051"; transcript_id "RvY_08051.1"; Scaffold003 rebuild transcript 4508919 4509925 . - . gene_id "RvY_08052"; transcript_id "RvY_08052.1"; gene_name "DUF814"; annotation "putative Coiled-coil domain-containing protein 25"; Pfam "[DUF814]"; CDD "Domain of unknown function (DUF814). This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Bacillus subtilis YloA where the N-terminal region is involved in this activity. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important."; similar_genes "CCD25_DANRE(e-value:7.8e-45;bit-score:178.0)"; Scaffold003 rebuild exon 4508919 4508994 . - . gene_id "RvY_08052"; transcript_id "RvY_08052.1"; Scaffold003 rebuild exon 4509058 4509367 . - . gene_id "RvY_08052"; transcript_id "RvY_08052.1"; Scaffold003 rebuild exon 4509540 4509615 . - . gene_id "RvY_08052"; transcript_id "RvY_08052.1"; Scaffold003 rebuild exon 4509733 4509824 . - . gene_id "RvY_08052"; transcript_id "RvY_08052.1"; Scaffold003 rebuild exon 4509895 4509925 . - . gene_id "RvY_08052"; transcript_id "RvY_08052.1"; Scaffold003 rebuild transcript 4510320 4510664 . - . gene_id "RvY_08053"; transcript_id "RvY_08053.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4510320 4510664 . - . gene_id "RvY_08053"; transcript_id "RvY_08053.1"; Scaffold003 rebuild transcript 4510584 4510778 . + . gene_id "RvY_08054"; transcript_id "RvY_08054.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4510584 4510778 . + . gene_id "RvY_08054"; transcript_id "RvY_08054.1"; Scaffold003 rebuild transcript 4510795 4511081 . + . gene_id "RvY_08055"; transcript_id "RvY_08055.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4510795 4510856 . + . gene_id "RvY_08055"; transcript_id "RvY_08055.1"; Scaffold003 rebuild exon 4510922 4511081 . + . gene_id "RvY_08055"; transcript_id "RvY_08055.1"; Scaffold003 rebuild transcript 4512599 4512712 . - . gene_id "RvY_08056"; transcript_id "RvY_08056.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4512599 4512712 . - . gene_id "RvY_08056"; transcript_id "RvY_08056.1"; Scaffold003 rebuild transcript 4512833 4513704 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.1"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "(2)P2RX4_MOUSE(e-value:1.7e-06;bit-score:51.0)"; Scaffold003 rebuild exon 4512833 4512840 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.1"; Scaffold003 rebuild exon 4513144 4513427 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.1"; Scaffold003 rebuild exon 4513493 4513585 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.1"; Scaffold003 rebuild exon 4513667 4513704 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.1"; Scaffold003 rebuild transcript 4512808 4513704 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.2"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "(2)P2RX4_MOUSE(e-value:1.7e-06;bit-score:51.0)"; Scaffold003 rebuild exon 4512808 4512840 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.2"; Scaffold003 rebuild exon 4513144 4513215 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.2"; Scaffold003 rebuild exon 4513283 4513427 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.2"; Scaffold003 rebuild exon 4513493 4513585 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.2"; Scaffold003 rebuild exon 4513667 4513704 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.2"; Scaffold003 rebuild transcript 4512808 4513704 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.3"; gene_name "P2X"; annotation "hypothetical protein."; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; similar_genes "(2)P2RX4_MOUSE(e-value:1.7e-06;bit-score:51.0)"; Scaffold003 rebuild exon 4512808 4512840 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.3"; Scaffold003 rebuild exon 4513283 4513427 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.3"; Scaffold003 rebuild exon 4513493 4513585 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.3"; Scaffold003 rebuild exon 4513667 4513704 . - . gene_id "RvY_08057"; transcript_id "RvY_08057.3"; Scaffold003 rebuild transcript 4516220 4517367 . - . gene_id "RvY_08058"; transcript_id "RvY_08058.1"; gene_name "AQP11"; annotation "aquaporin-11"; KO "K09870"; Scaffold003 rebuild exon 4516220 4516437 . - . gene_id "RvY_08058"; transcript_id "RvY_08058.1"; Scaffold003 rebuild exon 4516513 4516645 . - . gene_id "RvY_08058"; transcript_id "RvY_08058.1"; Scaffold003 rebuild exon 4516885 4517367 . - . gene_id "RvY_08058"; transcript_id "RvY_08058.1"; Scaffold003 rebuild transcript 4517878 4522872 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; gene_name "SMARCA5"; annotation "Probable global transcription activator SNF2L1"; Pfam "[SLIDE]|[SNF2_N] SNF2 family N-terminal domain|[HAND]|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; EC "EC3.6.1.-"; KO "K11654"; similar_genes "SMCA1_MOUSE(e-value:1.9e-177;bit-score:619.0)"; Scaffold003 rebuild exon 4517878 4518090 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4518204 4518472 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4518562 4518665 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4518745 4518845 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4518909 4519085 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4519157 4519318 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4519637 4520293 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4520383 4520517 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4520710 4521009 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4521202 4521621 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4521855 4522258 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild exon 4522452 4522872 . + . gene_id "RvY_08059"; transcript_id "RvY_08059.1"; Scaffold003 rebuild transcript 4524463 4529668 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; gene_name "(1)SMC_prok_B(2)tolA"; annotation "hypothetical protein."; CDD "(1)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.(2)cell envelope integrity inner membrane protein TolA; Provisional"; similar_genes "K1211_DANRE(e-value:1.0e-10;bit-score:65.0)"; Scaffold003 rebuild exon 4524463 4524803 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4524970 4525274 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4525640 4526274 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4526440 4526899 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4527099 4527456 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4527675 4528674 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4528862 4529003 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild exon 4529658 4529668 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.1"; Scaffold003 rebuild transcript 4526734 4529668 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.2"; gene_name "(1)SMC_prok_B(2)tolA"; annotation "hypothetical protein."; CDD "(1)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.(2)cell envelope integrity inner membrane protein TolA; Provisional"; similar_genes "K1211_DANRE(e-value:1.0e-10;bit-score:65.0)"; Scaffold003 rebuild exon 4526734 4526899 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.2"; Scaffold003 rebuild exon 4527099 4527456 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.2"; Scaffold003 rebuild exon 4527675 4528674 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.2"; Scaffold003 rebuild exon 4528862 4529003 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.2"; Scaffold003 rebuild exon 4529658 4529668 . + . gene_id "RvY_08060"; transcript_id "RvY_08060.2"; Scaffold003 rebuild transcript 4529212 4530497 . - . gene_id "RvY_08061"; transcript_id "RvY_08061.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4529212 4530288 . - . gene_id "RvY_08061"; transcript_id "RvY_08061.1"; Scaffold003 rebuild exon 4530387 4530497 . - . gene_id "RvY_08061"; transcript_id "RvY_08061.1"; Scaffold003 rebuild transcript 4529671 4530528 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4529671 4529853 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.1"; Scaffold003 rebuild exon 4529976 4530088 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.1"; Scaffold003 rebuild exon 4530183 4530313 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.1"; Scaffold003 rebuild exon 4530413 4530528 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.1"; Scaffold003 rebuild transcript 4529671 4530412 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4529671 4529853 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.2"; Scaffold003 rebuild exon 4529976 4530088 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.2"; Scaffold003 rebuild exon 4530183 4530313 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.2"; Scaffold003 rebuild exon 4530411 4530412 . + . gene_id "RvY_08062"; transcript_id "RvY_08062.2"; Scaffold003 rebuild transcript 4531526 4533468 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4531526 4531576 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4531788 4532227 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4532486 4532575 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4532643 4532892 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4532960 4533026 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4533103 4533187 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4533298 4533319 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild exon 4533403 4533468 . + . gene_id "RvY_08063"; transcript_id "RvY_08063.1"; Scaffold003 rebuild transcript 4533988 4534870 . + . gene_id "RvY_08064"; transcript_id "RvY_08064.1"; gene_name "AmtB"; annotation "hypothetical protein."; Pfam "[Ammonium_transp] Ammonium Transporter Family"; CDD "Ammonia permease [Inorganic ion transport and metabolism]"; Scaffold003 rebuild exon 4533988 4534402 . + . gene_id "RvY_08064"; transcript_id "RvY_08064.1"; Scaffold003 rebuild exon 4534477 4534568 . + . gene_id "RvY_08064"; transcript_id "RvY_08064.1"; Scaffold003 rebuild exon 4534627 4534687 . + . gene_id "RvY_08064"; transcript_id "RvY_08064.1"; Scaffold003 rebuild exon 4534860 4534870 . + . gene_id "RvY_08064"; transcript_id "RvY_08064.1"; Scaffold003 rebuild transcript 4535346 4537131 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; gene_name "amt"; annotation "hypothetical protein."; Pfam "[Ammonium_transp] Ammonium Transporter Family"; CDD "ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf."; Scaffold003 rebuild exon 4535346 4535569 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; Scaffold003 rebuild exon 4535853 4535916 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; Scaffold003 rebuild exon 4535977 4536103 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; Scaffold003 rebuild exon 4536191 4536252 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; Scaffold003 rebuild exon 4536331 4536453 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; Scaffold003 rebuild exon 4536649 4537131 . + . gene_id "RvY_08065"; transcript_id "RvY_08065.1"; Scaffold003 rebuild transcript 4537688 4539826 . + . gene_id "RvY_08066"; transcript_id "RvY_08066.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4537688 4537836 . + . gene_id "RvY_08066"; transcript_id "RvY_08066.1"; Scaffold003 rebuild exon 4538251 4538743 . + . gene_id "RvY_08066"; transcript_id "RvY_08066.1"; Scaffold003 rebuild exon 4539135 4539255 . + . gene_id "RvY_08066"; transcript_id "RvY_08066.1"; Scaffold003 rebuild exon 4539327 4539826 . + . gene_id "RvY_08066"; transcript_id "RvY_08066.1"; Scaffold003 rebuild transcript 4539905 4540838 . - . gene_id "RvY_08067"; transcript_id "RvY_08067.1"; annotation "hypothetical protein."; Pfam "[DUF3759]"; Scaffold003 rebuild exon 4539905 4540253 . - . gene_id "RvY_08067"; transcript_id "RvY_08067.1"; Scaffold003 rebuild exon 4540456 4540703 . - . gene_id "RvY_08067"; transcript_id "RvY_08067.1"; Scaffold003 rebuild exon 4540773 4540838 . - . gene_id "RvY_08067"; transcript_id "RvY_08067.1"; Scaffold003 rebuild transcript 4541018 4541443 . - . gene_id "RvY_08068"; transcript_id "RvY_08068.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4541018 4541443 . - . gene_id "RvY_08068"; transcript_id "RvY_08068.1"; Scaffold003 rebuild transcript 4541675 4543192 . + . gene_id "RvY_08069"; transcript_id "RvY_08069.1"; gene_name "CUE"; annotation "hypothetical protein."; Pfam "[CUE]"; CDD "Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) ""Proteins of the Endoplasmic reticulum"" (in press)"; Scaffold003 rebuild exon 4541675 4542048 . + . gene_id "RvY_08069"; transcript_id "RvY_08069.1"; Scaffold003 rebuild exon 4542362 4542804 . + . gene_id "RvY_08069"; transcript_id "RvY_08069.1"; Scaffold003 rebuild exon 4542987 4543192 . + . gene_id "RvY_08069"; transcript_id "RvY_08069.1"; Scaffold003 rebuild transcript 4545208 4548061 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4545208 4545243 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4545380 4546129 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4546354 4546944 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4547212 4547377 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4547454 4547602 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4547663 4547723 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4547793 4547880 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild exon 4547974 4548061 . + . gene_id "RvY_08070"; transcript_id "RvY_08070.1"; Scaffold003 rebuild transcript 4549233 4551468 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4549233 4549289 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4549539 4550170 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4550338 4550420 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4550500 4550663 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4550874 4550940 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4551032 4551106 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4551194 4551241 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4551303 4551333 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild exon 4551405 4551468 . + . gene_id "RvY_08071"; transcript_id "RvY_08071.1"; Scaffold003 rebuild transcript 4552346 4553615 . + . gene_id "RvY_08072"; transcript_id "RvY_08072.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4552346 4552375 . + . gene_id "RvY_08072"; transcript_id "RvY_08072.1"; Scaffold003 rebuild exon 4552519 4552793 . + . gene_id "RvY_08072"; transcript_id "RvY_08072.1"; Scaffold003 rebuild exon 4552898 4552959 . + . gene_id "RvY_08072"; transcript_id "RvY_08072.1"; Scaffold003 rebuild exon 4553130 4553263 . + . gene_id "RvY_08072"; transcript_id "RvY_08072.1"; Scaffold003 rebuild exon 4553358 4553615 . + . gene_id "RvY_08072"; transcript_id "RvY_08072.1"; Scaffold003 rebuild transcript 4554281 4555084 . - . gene_id "RvY_08073"; transcript_id "RvY_08073.1"; gene_name "RAB"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking."; similar_genes "RAB15_RAT(e-value:1.4e-14;bit-score:78.0)"; Scaffold003 rebuild exon 4554281 4555084 . - . gene_id "RvY_08073"; transcript_id "RvY_08073.1"; Scaffold003 rebuild transcript 4555757 4557954 . - . gene_id "RvY_08074"; transcript_id "RvY_08074.1"; gene_name "RHBDL1_2_3"; annotation "putative Protein rhomboid"; Pfam "[Rhomboid] Rhomboid family"; EC "EC3.4.21.105"; KO "K02857"; similar_genes "RHOM_DROME(e-value:3.8e-38;bit-score:156.0)"; Scaffold003 rebuild exon 4555757 4556068 . - . gene_id "RvY_08074"; transcript_id "RvY_08074.1"; Scaffold003 rebuild exon 4556386 4556486 . - . gene_id "RvY_08074"; transcript_id "RvY_08074.1"; Scaffold003 rebuild exon 4556670 4556782 . - . gene_id "RvY_08074"; transcript_id "RvY_08074.1"; Scaffold003 rebuild exon 4556970 4557112 . - . gene_id "RvY_08074"; transcript_id "RvY_08074.1"; Scaffold003 rebuild exon 4557682 4557954 . - . gene_id "RvY_08074"; transcript_id "RvY_08074.1"; Scaffold003 rebuild transcript 4560424 4563322 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; gene_name "GBP"; annotation "hypothetical protein."; Pfam "[GBP] Guanylate-binding protein, N-terminal domain"; CDD "Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach."; Scaffold003 rebuild exon 4560424 4560624 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4560700 4560832 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4560890 4560936 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4561215 4561487 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4561544 4561649 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4561742 4561957 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4562416 4562543 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4562605 4562661 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4562739 4563056 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild exon 4563122 4563322 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.1"; Scaffold003 rebuild transcript 4560424 4562162 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; gene_name "GBP"; annotation "hypothetical protein."; Pfam "[GBP] Guanylate-binding protein, N-terminal domain"; CDD "Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach."; Scaffold003 rebuild exon 4560424 4560624 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild exon 4560700 4560832 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild exon 4560890 4560936 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild exon 4561215 4561487 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild exon 4561544 4561649 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild exon 4561742 4561957 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild exon 4562020 4562162 . + . gene_id "RvY_08075"; transcript_id "RvY_08075.2"; Scaffold003 rebuild transcript 4563533 4565258 . - . gene_id "RvY_08076"; transcript_id "RvY_08076.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4563533 4563690 . - . gene_id "RvY_08076"; transcript_id "RvY_08076.1"; Scaffold003 rebuild exon 4563972 4564688 . - . gene_id "RvY_08076"; transcript_id "RvY_08076.1"; Scaffold003 rebuild exon 4564976 4565158 . - . gene_id "RvY_08076"; transcript_id "RvY_08076.1"; Scaffold003 rebuild exon 4565228 4565258 . - . gene_id "RvY_08076"; transcript_id "RvY_08076.1"; Scaffold003 rebuild transcript 4566902 4568804 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold003 rebuild exon 4566902 4567055 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.1"; Scaffold003 rebuild exon 4567127 4567371 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.1"; Scaffold003 rebuild exon 4567935 4568804 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.1"; Scaffold003 rebuild transcript 4567237 4568804 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold003 rebuild exon 4567237 4567371 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.2"; Scaffold003 rebuild exon 4567935 4568804 . + . gene_id "RvY_08077"; transcript_id "RvY_08077.2"; Scaffold003 rebuild transcript 4569279 4570009 . + . gene_id "RvY_08078"; transcript_id "RvY_08078.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4569279 4569542 . + . gene_id "RvY_08078"; transcript_id "RvY_08078.1"; Scaffold003 rebuild exon 4569722 4570009 . + . gene_id "RvY_08078"; transcript_id "RvY_08078.1"; Scaffold003 rebuild transcript 4570149 4573779 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; gene_name "CDC48"; annotation "Nuclear valosin-containing protein-like"; Pfam "[Arch_ATPase] Archaeal ATPase|[TIP49] TIP49 C-terminus|[AAA_16] AAA ATPase domain|[AAA_14] AAA domain|[AAA_22] AAA domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[IstB_IS21] IstB-like ATP binding protein|[AAA_5] AAA domain (dynein-related subfamily)|[Cytidylate_kin2] Cytidylate kinase-like family|[AAA_25] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[AAA_28] AAA domain|[AAA_19] Part of AAA domain|[AAA_17] AAA domain|[NACHT]|[Zeta_toxin] Zeta toxin|[AAA_2] AAA domain (Cdc48 subfamily)|[KaiC]|[RNA_helicase] RNA helicase|[AAA_33] AAA domain|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus."; KO "K14571"; similar_genes "NVL_HUMAN(e-value:7.9e-64;bit-score:241.0)"; Scaffold003 rebuild exon 4570149 4570256 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4570457 4570649 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4570712 4570782 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4570841 4570947 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4571045 4571264 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4571330 4571497 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4571594 4571716 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4571914 4572148 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4572289 4572426 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4572489 4572627 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4572782 4572899 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4572962 4573063 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4573137 4573271 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4573365 4573429 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4573527 4573617 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild exon 4573699 4573779 . - . gene_id "RvY_08079"; transcript_id "RvY_08079.1"; Scaffold003 rebuild transcript 4574134 4574898 . + . gene_id "RvY_08080"; transcript_id "RvY_08080.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4574134 4574435 . + . gene_id "RvY_08080"; transcript_id "RvY_08080.1"; Scaffold003 rebuild exon 4574580 4574703 . + . gene_id "RvY_08080"; transcript_id "RvY_08080.1"; Scaffold003 rebuild exon 4574767 4574898 . + . gene_id "RvY_08080"; transcript_id "RvY_08080.1"; Scaffold003 rebuild transcript 4575055 4575474 . - . gene_id "RvY_08081"; transcript_id "RvY_08081.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4575055 4575474 . - . gene_id "RvY_08081"; transcript_id "RvY_08081.1"; Scaffold003 rebuild transcript 4575026 4575415 . - . gene_id "RvY_08081"; transcript_id "RvY_08081.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4575026 4575415 . - . gene_id "RvY_08081"; transcript_id "RvY_08081.2"; Scaffold003 rebuild transcript 4576110 4580663 . + . gene_id "RvY_08082"; transcript_id "RvY_08082.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4576110 4577181 . + . gene_id "RvY_08082"; transcript_id "RvY_08082.1"; Scaffold003 rebuild exon 4577445 4577762 . + . gene_id "RvY_08082"; transcript_id "RvY_08082.1"; Scaffold003 rebuild exon 4578521 4579057 . + . gene_id "RvY_08082"; transcript_id "RvY_08082.1"; Scaffold003 rebuild exon 4579351 4579818 . + . gene_id "RvY_08082"; transcript_id "RvY_08082.1"; Scaffold003 rebuild exon 4580077 4580663 . + . gene_id "RvY_08082"; transcript_id "RvY_08082.1"; Scaffold003 rebuild transcript 4582303 4584419 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; annotation "hypothetical protein."; Pfam "[DUF4201]"; Scaffold003 rebuild exon 4582303 4582464 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4582630 4582893 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4582969 4583094 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4583177 4583296 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4583396 4583542 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4583756 4583903 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4583973 4584200 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild exon 4584271 4584419 . - . gene_id "RvY_08083"; transcript_id "RvY_08083.1"; Scaffold003 rebuild transcript 4586158 4588271 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; gene_name "FKBP4_5"; annotation "putative FK506-binding protein 59"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; EC "EC5.2.1.8"; KO "K09571"; similar_genes "FKB59_DROME(e-value:2.5e-35;bit-score:146.0)"; Scaffold003 rebuild exon 4586158 4586431 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4586491 4586654 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4586813 4586918 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4586978 4587225 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4587468 4587551 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4587619 4587855 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4587945 4588136 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild exon 4588203 4588271 . + . gene_id "RvY_08084"; transcript_id "RvY_08084.1"; Scaffold003 rebuild transcript 4588796 4589383 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4588796 4589246 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.1"; Scaffold003 rebuild exon 4589307 4589383 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.1"; Scaffold003 rebuild transcript 4588801 4589383 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4588801 4588870 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.2"; Scaffold003 rebuild exon 4588944 4589246 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.2"; Scaffold003 rebuild exon 4589307 4589383 . + . gene_id "RvY_08085"; transcript_id "RvY_08085.2"; Scaffold003 rebuild transcript 4589751 4591300 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold003 rebuild exon 4589751 4589978 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; Scaffold003 rebuild exon 4590280 4590607 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; Scaffold003 rebuild exon 4590677 4590709 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; Scaffold003 rebuild exon 4590776 4590888 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; Scaffold003 rebuild exon 4590988 4591096 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; Scaffold003 rebuild exon 4591203 4591300 . + . gene_id "RvY_08086"; transcript_id "RvY_08086.1"; Scaffold003 rebuild transcript 4591752 4593677 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; gene_name "ULK"; annotation "putative Serine/threonine-protein kinase ULK3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[MIT] MIT (microtubule interacting and transport) domain"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08269"; similar_genes "ULK3_CHICK(e-value:3.4e-26;bit-score:116.0)"; Scaffold003 rebuild exon 4591752 4591972 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4592100 4592175 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4592561 4592808 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4592863 4592968 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4593037 4593275 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4593331 4593403 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4593467 4593537 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild exon 4593614 4593677 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.1"; Scaffold003 rebuild transcript 4591680 4593677 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; gene_name "ULK"; annotation "putative Serine/threonine-protein kinase ULK3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[MIT] MIT (microtubule interacting and transport) domain"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08269"; similar_genes "ULK3_CHICK(e-value:3.4e-26;bit-score:116.0)"; Scaffold003 rebuild exon 4591680 4591705 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4591790 4591969 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4592100 4592175 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4592561 4592808 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4592863 4592968 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4593037 4593275 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4593331 4593403 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4593467 4593537 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild exon 4593614 4593677 . - . gene_id "RvY_08087"; transcript_id "RvY_08087.2"; Scaffold003 rebuild transcript 4594025 4594409 . - . gene_id "RvY_08088"; transcript_id "RvY_08088.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; similar_genes "ULK3_XENLA(e-value:6.6e-06;bit-score:49.0)"; Scaffold003 rebuild exon 4594025 4594213 . - . gene_id "RvY_08088"; transcript_id "RvY_08088.1"; Scaffold003 rebuild exon 4594275 4594409 . - . gene_id "RvY_08088"; transcript_id "RvY_08088.1"; Scaffold003 rebuild transcript 4594872 4599351 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; gene_name "PIGN"; annotation "putative GPI ethanolamine phosphate transferase 1"; Pfam "[Sulfatase]|[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|[PigN] Phosphatidylinositolglycan class N (PIG-N)"; CDD "(2)Uncharacterized proteins of the AP superfamily [General function prediction only]"; EC "EC2.-.-.-|EC2.7.-.-"; KO "K05285"; similar_genes "PIGN_MOUSE(e-value:5.9e-26;bit-score:115.0)"; Scaffold003 rebuild exon 4594872 4595121 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4595283 4595424 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4595482 4595656 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4595723 4595847 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4595920 4596050 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4596109 4596266 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4596464 4596612 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4596678 4596756 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4596825 4596904 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4597010 4597170 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4597398 4597737 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4597951 4598165 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4598230 4598562 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4598755 4598957 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild exon 4599166 4599351 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.1"; Scaffold003 rebuild transcript 4594872 4598173 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; gene_name "PIGN"; annotation "putative GPI ethanolamine phosphate transferase 1"; Pfam "[Sulfatase]|[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|[PigN] Phosphatidylinositolglycan class N (PIG-N)"; CDD "(2)Uncharacterized proteins of the AP superfamily [General function prediction only]"; EC "EC2.-.-.-|EC2.7.-.-"; KO "K05285"; similar_genes "PIGN_MOUSE(e-value:5.9e-26;bit-score:115.0)"; Scaffold003 rebuild exon 4594872 4595121 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4595283 4595424 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4595482 4595656 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4595723 4595847 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4595920 4596050 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4596109 4596266 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4596464 4596612 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4596678 4596756 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4596825 4596904 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4597010 4597170 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4597398 4597737 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild exon 4597951 4598173 . + . gene_id "RvY_08089"; transcript_id "RvY_08089.2"; Scaffold003 rebuild transcript 4599569 4601867 . - . gene_id "RvY_08090"; transcript_id "RvY_08090.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4599569 4599804 . - . gene_id "RvY_08090"; transcript_id "RvY_08090.1"; Scaffold003 rebuild exon 4599958 4600646 . - . gene_id "RvY_08090"; transcript_id "RvY_08090.1"; Scaffold003 rebuild exon 4600939 4601867 . - . gene_id "RvY_08090"; transcript_id "RvY_08090.1"; Scaffold003 rebuild transcript 4602358 4607155 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; gene_name "Nup88"; annotation "hypothetical protein."; Pfam "[Nup88] Nuclear pore component"; CDD "Nuclear pore component. Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells."; KO "K14318"; Scaffold003 rebuild exon 4602358 4602663 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4602727 4602881 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4603051 4603386 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4603450 4603624 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4603701 4603833 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4603907 4603996 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4604221 4604299 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4604369 4604473 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4604541 4604714 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4604774 4604896 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4604986 4605132 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4605426 4605552 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4605637 4605755 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4605826 4605885 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild exon 4607149 4607155 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.1"; Scaffold003 rebuild transcript 4602358 4605889 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; gene_name "Nup88"; annotation "hypothetical protein."; Pfam "[Nup88] Nuclear pore component"; CDD "Nuclear pore component. Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells."; KO "K14318"; Scaffold003 rebuild exon 4602358 4602663 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4602727 4602881 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4603051 4603386 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4603450 4603624 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4603701 4603833 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4603907 4603996 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4604221 4604299 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4604369 4604473 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4604541 4604714 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4604774 4604896 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4604986 4605132 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4605426 4605552 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4605637 4605755 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild exon 4605826 4605889 . + . gene_id "RvY_08091"; transcript_id "RvY_08091.2"; Scaffold003 rebuild transcript 4607752 4609364 . + . gene_id "RvY_08092"; transcript_id "RvY_08092.1"; gene_name "MRP_assoc_pro"; annotation "hypothetical protein."; Pfam "[ABC_membrane] ABC transporter transmembrane region"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; Scaffold003 rebuild exon 4607752 4607886 . + . gene_id "RvY_08092"; transcript_id "RvY_08092.1"; Scaffold003 rebuild exon 4607971 4608099 . + . gene_id "RvY_08092"; transcript_id "RvY_08092.1"; Scaffold003 rebuild exon 4608648 4609025 . + . gene_id "RvY_08092"; transcript_id "RvY_08092.1"; Scaffold003 rebuild exon 4609197 4609364 . + . gene_id "RvY_08092"; transcript_id "RvY_08092.1"; Scaffold003 rebuild transcript 4611100 4615795 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; gene_name "MRP_assoc_pro"; annotation "Canalicular multispecific organic anion transporter 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "MRP2_HUMAN(e-value:2.5e-73;bit-score:273.0)"; Scaffold003 rebuild exon 4611100 4611385 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4611661 4611974 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4612067 4612165 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4612459 4613152 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4613421 4613662 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4613720 4613788 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4613879 4614078 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4614249 4614483 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4614556 4614702 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4614894 4615219 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4615283 4615477 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild exon 4615546 4615795 . + . gene_id "RvY_08093"; transcript_id "RvY_08093.1"; Scaffold003 rebuild transcript 4616269 4618968 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; gene_name "ALG6"; annotation "putative Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase"; Pfam "[Alg6_Alg8] ALG6, ALG8 glycosyltransferase family"; CDD "ALG6, ALG8 glycosyltransferase family. N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one. In the human alg6 gene, a C->T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147."; EC "EC2.4.1.-"; KO "K03848"; similar_genes "ALG6_HUMAN(e-value:1.8e-44;bit-score:177.0)"; Scaffold003 rebuild exon 4616269 4616365 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4616429 4616513 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4616684 4616773 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4616848 4616936 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4617010 4617172 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4617271 4617453 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4617711 4617929 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4618005 4618089 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4618165 4618235 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4618313 4618565 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild exon 4618759 4618968 . + . gene_id "RvY_08094"; transcript_id "RvY_08094.1"; Scaffold003 rebuild transcript 4619369 4620273 . - . gene_id "RvY_08095"; transcript_id "RvY_08095.1"; gene_name "SPCS2"; annotation "signal peptidase complex subunit 2 [EC:3.4.-.-]"; Pfam "[SPC25] Microsomal signal peptidase 25 kDa subunit (SPC25)"; EC "EC3.4.-.-"; KO "K12947"; Scaffold003 rebuild exon 4619369 4619558 . - . gene_id "RvY_08095"; transcript_id "RvY_08095.1"; Scaffold003 rebuild exon 4619624 4619898 . - . gene_id "RvY_08095"; transcript_id "RvY_08095.1"; Scaffold003 rebuild exon 4620080 4620175 . - . gene_id "RvY_08095"; transcript_id "RvY_08095.1"; Scaffold003 rebuild exon 4620250 4620273 . - . gene_id "RvY_08095"; transcript_id "RvY_08095.1"; Scaffold003 rebuild transcript 4621065 4624023 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; gene_name "(1)K08286(2)STKc_PKB"; annotation "(1)RAC-beta serine/threonine-protein kinase(2)putative RAC serine/threonine-protein kinase"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1)[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis."; EC "(1)EC2.7.11.-|EC2.7.11.1(2)EC2.7.11.1"; KO "(1)K08286"; similar_genes "(1)AKT2_HUMAN(e-value:7.9e-81;bit-score:298.0)(2)AKT1_DROME(e-value:4.9e-38;bit-score:155.0)"; Scaffold003 rebuild exon 4621065 4621127 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4621372 4621541 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4621608 4621896 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4621979 4622053 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4622134 4622290 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4622541 4622772 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4622861 4622960 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4623203 4623242 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild exon 4623554 4624023 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.1"; Scaffold003 rebuild transcript 4621065 4622776 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; gene_name "(1)K08286(2)STKc_PKB"; annotation "(1)RAC-beta serine/threonine-protein kinase(2)putative RAC serine/threonine-protein kinase"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1)[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis."; EC "(1)EC2.7.11.-|EC2.7.11.1(2)EC2.7.11.1"; KO "(1)K08286"; similar_genes "(1)AKT2_HUMAN(e-value:7.9e-81;bit-score:298.0)(2)AKT1_DROME(e-value:4.9e-38;bit-score:155.0)"; Scaffold003 rebuild exon 4621065 4621127 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; Scaffold003 rebuild exon 4621372 4621541 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; Scaffold003 rebuild exon 4621608 4621896 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; Scaffold003 rebuild exon 4621979 4622053 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; Scaffold003 rebuild exon 4622134 4622290 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; Scaffold003 rebuild exon 4622541 4622776 . + . gene_id "RvY_08096"; transcript_id "RvY_08096.2"; Scaffold003 rebuild transcript 4625680 4626591 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4625680 4626000 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.1"; Scaffold003 rebuild exon 4626173 4626310 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.1"; Scaffold003 rebuild exon 4626370 4626591 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.1"; Scaffold003 rebuild transcript 4626003 4626591 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4626003 4626005 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.2"; Scaffold003 rebuild exon 4626173 4626310 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.2"; Scaffold003 rebuild exon 4626370 4626591 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.2"; Scaffold003 rebuild transcript 4625680 4626200 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4625680 4626005 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.3"; Scaffold003 rebuild exon 4626173 4626200 . + . gene_id "RvY_08097"; transcript_id "RvY_08097.3"; Scaffold003 rebuild transcript 4627027 4627962 . - . gene_id "RvY_08098"; transcript_id "RvY_08098.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4627027 4627118 . - . gene_id "RvY_08098"; transcript_id "RvY_08098.1"; Scaffold003 rebuild exon 4627195 4627300 . - . gene_id "RvY_08098"; transcript_id "RvY_08098.1"; Scaffold003 rebuild exon 4627523 4627599 . - . gene_id "RvY_08098"; transcript_id "RvY_08098.1"; Scaffold003 rebuild exon 4627669 4627801 . - . gene_id "RvY_08098"; transcript_id "RvY_08098.1"; Scaffold003 rebuild exon 4627918 4627962 . - . gene_id "RvY_08098"; transcript_id "RvY_08098.1"; Scaffold003 rebuild transcript 4631026 4631470 . - . gene_id "RvY_08099"; transcript_id "RvY_08099.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4631026 4631352 . - . gene_id "RvY_08099"; transcript_id "RvY_08099.1"; Scaffold003 rebuild exon 4631417 4631470 . - . gene_id "RvY_08099"; transcript_id "RvY_08099.1"; Scaffold003 rebuild transcript 4632577 4632785 . - . gene_id "RvY_08100"; transcript_id "RvY_08100.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4632577 4632700 . - . gene_id "RvY_08100"; transcript_id "RvY_08100.1"; Scaffold003 rebuild exon 4632760 4632785 . - . gene_id "RvY_08100"; transcript_id "RvY_08100.1"; Scaffold003 rebuild transcript 4633284 4637500 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4633284 4633432 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4633614 4633776 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4633850 4634089 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4634152 4634424 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4634709 4635097 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4635382 4635631 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4635693 4635770 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4635842 4636003 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4636072 4636395 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4636655 4636978 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4637040 4637232 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild exon 4637334 4637500 . - . gene_id "RvY_08101"; transcript_id "RvY_08101.1"; Scaffold003 rebuild transcript 4638120 4639070 . + . gene_id "RvY_08102"; transcript_id "RvY_08102.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4638120 4638555 . + . gene_id "RvY_08102"; transcript_id "RvY_08102.1"; Scaffold003 rebuild exon 4638838 4639070 . + . gene_id "RvY_08102"; transcript_id "RvY_08102.1"; Scaffold003 rebuild transcript 4639259 4642626 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; gene_name "CzcD"; annotation "Zinc transporter 7-B"; Pfam "[Cation_efflux] Cation efflux family"; CDD "Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]"; KO "K14694"; similar_genes "ZNT7B_XENLA(e-value:5.2e-61;bit-score:232.0)"; Scaffold003 rebuild exon 4639259 4639459 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4639755 4639845 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4639928 4640063 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4641357 4641599 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4641670 4641802 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4641884 4641971 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4642086 4642199 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4642314 4642415 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild exon 4642490 4642626 . - . gene_id "RvY_08103"; transcript_id "RvY_08103.1"; Scaffold003 rebuild transcript 4642955 4643204 . - . gene_id "RvY_08104"; transcript_id "RvY_08104.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4642955 4643026 . - . gene_id "RvY_08104"; transcript_id "RvY_08104.1"; Scaffold003 rebuild exon 4643175 4643204 . - . gene_id "RvY_08104"; transcript_id "RvY_08104.1"; Scaffold003 rebuild transcript 4643608 4644339 . + . gene_id "RvY_08105"; transcript_id "RvY_08105.1"; gene_name "TFIID7"; annotation "transcription initiation factor TFIID subunit D7"; Pfam "[TFIID-31kDa] Transcription initiation factor IID, 31kD subunit"; CDD "Transcription initiation factor IID, 31kD subunit. This family represents the N-terminus of the 31kD subunit (42kD in drosophila) of transcription initiation factor IID (TAFII31). TAFII31 binds to p53, and is an essential requirement for p53 mediated transcription activation."; KO "K03133"; Scaffold003 rebuild exon 4643608 4643731 . + . gene_id "RvY_08105"; transcript_id "RvY_08105.1"; Scaffold003 rebuild exon 4643940 4644079 . + . gene_id "RvY_08105"; transcript_id "RvY_08105.1"; Scaffold003 rebuild exon 4644172 4644339 . + . gene_id "RvY_08105"; transcript_id "RvY_08105.1"; Scaffold003 rebuild transcript 4644883 4646989 . - . gene_id "RvY_08106"; transcript_id "RvY_08106.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold003 rebuild exon 4644883 4645128 . - . gene_id "RvY_08106"; transcript_id "RvY_08106.1"; Scaffold003 rebuild exon 4645199 4645237 . - . gene_id "RvY_08106"; transcript_id "RvY_08106.1"; Scaffold003 rebuild exon 4645506 4646500 . - . gene_id "RvY_08106"; transcript_id "RvY_08106.1"; Scaffold003 rebuild exon 4646731 4646989 . - . gene_id "RvY_08106"; transcript_id "RvY_08106.1"; Scaffold003 rebuild transcript 4647752 4648931 . + . gene_id "RvY_08107"; transcript_id "RvY_08107.1"; annotation "hypothetical protein."; Pfam "[NICE-3] NICE-3 protein"; Scaffold003 rebuild exon 4647752 4648728 . + . gene_id "RvY_08107"; transcript_id "RvY_08107.1"; Scaffold003 rebuild exon 4648931 4648931 . + . gene_id "RvY_08107"; transcript_id "RvY_08107.1"; Scaffold003 rebuild transcript 4649575 4653556 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[fn3] Fibronectin type III domain|[V-set] Immunoglobulin V-set domain|[DB] DB module"; Scaffold003 rebuild exon 4649575 4649665 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4649764 4649867 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4649947 4650052 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4650275 4650378 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4650446 4651166 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4651546 4651971 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4652232 4652691 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild exon 4653175 4653556 . + . gene_id "RvY_08108"; transcript_id "RvY_08108.1"; Scaffold003 rebuild transcript 4654557 4656889 . - . gene_id "RvY_08109"; transcript_id "RvY_08109.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4654557 4654964 . - . gene_id "RvY_08109"; transcript_id "RvY_08109.1"; Scaffold003 rebuild exon 4655263 4655397 . - . gene_id "RvY_08109"; transcript_id "RvY_08109.1"; Scaffold003 rebuild exon 4655497 4655617 . - . gene_id "RvY_08109"; transcript_id "RvY_08109.1"; Scaffold003 rebuild exon 4656306 4656404 . - . gene_id "RvY_08109"; transcript_id "RvY_08109.1"; Scaffold003 rebuild exon 4656756 4656889 . - . gene_id "RvY_08109"; transcript_id "RvY_08109.1"; Scaffold003 rebuild transcript 4657023 4657409 . + . gene_id "RvY_08110"; transcript_id "RvY_08110.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4657023 4657409 . + . gene_id "RvY_08110"; transcript_id "RvY_08110.1"; Scaffold003 rebuild transcript 4660744 4662115 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4660744 4660762 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.1"; Scaffold003 rebuild exon 4660825 4661264 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.1"; Scaffold003 rebuild exon 4661346 4661428 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.1"; Scaffold003 rebuild exon 4661696 4662009 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.1"; Scaffold003 rebuild exon 4662075 4662115 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.1"; Scaffold003 rebuild transcript 4660833 4662115 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4660833 4661264 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.2"; Scaffold003 rebuild exon 4661346 4661428 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.2"; Scaffold003 rebuild exon 4661693 4662009 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.2"; Scaffold003 rebuild exon 4662075 4662115 . + . gene_id "RvY_08111"; transcript_id "RvY_08111.2"; Scaffold003 rebuild transcript 4663023 4665201 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; annotation "putative UPF0465 protein C5orf33 homolog"; Pfam "[NAD_kinase] ATP-NAD kinase"; similar_genes "CE033_RAT(e-value:1.4e-29;bit-score:127.0)"; Scaffold003 rebuild exon 4663023 4663067 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4663134 4663361 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4663525 4663613 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4663748 4663918 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4663973 4664323 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4664605 4664756 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4664819 4664996 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild exon 4665066 4665201 . + . gene_id "RvY_08112"; transcript_id "RvY_08112.1"; Scaffold003 rebuild transcript 4665598 4667106 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; gene_name "ATPeVAC39"; annotation "V-type proton ATPase subunit d 1"; Pfam "[vATP-synt_AC39] ATP synthase (C/AC39) subunit"; EC "EC3.6.3.14"; KO "K02146"; similar_genes "VA0D1_DROME(e-value:4.3e-124;bit-score:441.0)"; Scaffold003 rebuild exon 4665598 4665759 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; Scaffold003 rebuild exon 4665822 4666082 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; Scaffold003 rebuild exon 4666149 4666226 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; Scaffold003 rebuild exon 4666372 4666630 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; Scaffold003 rebuild exon 4666702 4666873 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; Scaffold003 rebuild exon 4666968 4667106 . - . gene_id "RvY_08113"; transcript_id "RvY_08113.1"; Scaffold003 rebuild transcript 4667992 4672021 . + . gene_id "RvY_08114"; transcript_id "RvY_08114.1"; annotation "Dynamin-like 120 kDa protein, mitochondrial"; Pfam "[Dynamin_N] Dynamin family"; similar_genes "OPA1_DANRE(e-value:1.1e-135;bit-score:480.0)"; Scaffold003 rebuild exon 4667992 4668511 . + . gene_id "RvY_08114"; transcript_id "RvY_08114.1"; Scaffold003 rebuild exon 4668686 4669143 . + . gene_id "RvY_08114"; transcript_id "RvY_08114.1"; Scaffold003 rebuild exon 4669401 4669798 . + . gene_id "RvY_08114"; transcript_id "RvY_08114.1"; Scaffold003 rebuild exon 4670240 4670705 . + . gene_id "RvY_08114"; transcript_id "RvY_08114.1"; Scaffold003 rebuild exon 4670939 4672021 . + . gene_id "RvY_08114"; transcript_id "RvY_08114.1"; Scaffold003 rebuild transcript 4674285 4676163 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.1"; gene_name "K00683"; annotation "glutaminyl-peptide cyclotransferase [EC:2.3.2.5]"; Pfam "[Peptidase_M28] Peptidase family M28"; EC "EC2.3.2.-|EC2.3.2.5"; KO "K00683"; similar_genes "QPCTL_BOVIN(e-value:1.8e-12;bit-score:70.0)"; Scaffold003 rebuild exon 4674285 4675100 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.1"; Scaffold003 rebuild exon 4675633 4675902 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.1"; Scaffold003 rebuild exon 4676041 4676163 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.1"; Scaffold003 rebuild transcript 4674285 4676090 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.2"; gene_name "K00683"; annotation "glutaminyl-peptide cyclotransferase [EC:2.3.2.5]"; Pfam "[Peptidase_M28] Peptidase family M28"; EC "EC2.3.2.-|EC2.3.2.5"; KO "K00683"; similar_genes "QPCTL_BOVIN(e-value:1.8e-12;bit-score:70.0)"; Scaffold003 rebuild exon 4674285 4675100 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.2"; Scaffold003 rebuild exon 4675633 4675924 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.2"; Scaffold003 rebuild exon 4676041 4676090 . - . gene_id "RvY_08115"; transcript_id "RvY_08115.2"; Scaffold003 rebuild transcript 4677390 4681388 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; gene_name "CNOT3"; annotation "(1)putative CCR4-NOT transcription complex subunit 3(2)CCR4-NOT transcription complex subunit 3"; Pfam "[Not3] Not1 N-terminal domain, CCR4-Not complex component|[NOT2_3_5] NOT2 / NOT3 / NOT5 family"; KO "K12580"; similar_genes "(1)CNOT3_HUMAN(e-value:5.9e-26;bit-score:115.0)(2)CNOT3_MOUSE(e-value:1.5e-24;bit-score:111.0)"; Scaffold003 rebuild exon 4677390 4677414 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4677486 4677553 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4677620 4677694 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4677788 4677880 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4677946 4678074 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4678140 4678235 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4678430 4678649 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4678725 4678953 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4679016 4679080 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4679184 4679333 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4679644 4680050 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4680361 4680686 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4680755 4680890 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4681085 4681210 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild exon 4681278 4681388 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.1"; Scaffold003 rebuild transcript 4677390 4680911 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; gene_name "CNOT3"; annotation "(1)putative CCR4-NOT transcription complex subunit 3(2)CCR4-NOT transcription complex subunit 3"; Pfam "[Not3] Not1 N-terminal domain, CCR4-Not complex component|[NOT2_3_5] NOT2 / NOT3 / NOT5 family"; KO "K12580"; similar_genes "(1)CNOT3_HUMAN(e-value:5.9e-26;bit-score:115.0)(2)CNOT3_MOUSE(e-value:1.5e-24;bit-score:111.0)"; Scaffold003 rebuild exon 4677390 4677414 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4677486 4677553 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4677620 4677694 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4677788 4677880 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4677946 4678074 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4678140 4678235 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4678430 4678649 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4678725 4678953 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4679016 4679080 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4679184 4679333 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4679644 4680050 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4680361 4680686 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild exon 4680755 4680911 . + . gene_id "RvY_08116"; transcript_id "RvY_08116.2"; Scaffold003 rebuild transcript 4681914 4682596 . + . gene_id "RvY_08117"; transcript_id "RvY_08117.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4681914 4682249 . + . gene_id "RvY_08117"; transcript_id "RvY_08117.1"; Scaffold003 rebuild exon 4682444 4682596 . + . gene_id "RvY_08117"; transcript_id "RvY_08117.1"; Scaffold003 rebuild transcript 4683350 4684152 . + . gene_id "RvY_08118"; transcript_id "RvY_08118.1"; gene_name "UPF0041"; annotation "putative Brain protein 44-like protein"; Pfam "[UPF0041] Uncharacterised protein family (UPF0041)"; CDD "Uncharacterized protein family (UPF0041)."; similar_genes "BR44L_MOUSE(e-value:1.4e-31;bit-score:134.0)"; Scaffold003 rebuild exon 4683350 4683417 . + . gene_id "RvY_08118"; transcript_id "RvY_08118.1"; Scaffold003 rebuild exon 4683524 4683527 . + . gene_id "RvY_08118"; transcript_id "RvY_08118.1"; Scaffold003 rebuild exon 4683598 4683694 . + . gene_id "RvY_08118"; transcript_id "RvY_08118.1"; Scaffold003 rebuild exon 4683882 4684014 . + . gene_id "RvY_08118"; transcript_id "RvY_08118.1"; Scaffold003 rebuild exon 4684092 4684152 . + . gene_id "RvY_08118"; transcript_id "RvY_08118.1"; Scaffold003 rebuild transcript 4684309 4687684 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; annotation "hypothetical protein."; Pfam "[RRN3] RNA polymerase I specific transcription initiation factor RRN3"; KO "K15216"; Scaffold003 rebuild exon 4684309 4684458 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4684538 4684616 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4684881 4685027 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4685097 4685384 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4686089 4686543 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4686728 4686896 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4686964 4687214 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4687277 4687453 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild exon 4687571 4687684 . - . gene_id "RvY_08119"; transcript_id "RvY_08119.1"; Scaffold003 rebuild transcript 4687789 4688146 . - . gene_id "RvY_08120"; transcript_id "RvY_08120.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4687789 4687817 . - . gene_id "RvY_08120"; transcript_id "RvY_08120.1"; Scaffold003 rebuild exon 4688017 4688146 . - . gene_id "RvY_08120"; transcript_id "RvY_08120.1"; Scaffold003 rebuild transcript 4688281 4689263 . + . gene_id "RvY_08121"; transcript_id "RvY_08121.1"; annotation "hypothetical protein."; Pfam "[DUF1761]"; Scaffold003 rebuild exon 4688281 4688341 . + . gene_id "RvY_08121"; transcript_id "RvY_08121.1"; Scaffold003 rebuild exon 4688432 4688535 . + . gene_id "RvY_08121"; transcript_id "RvY_08121.1"; Scaffold003 rebuild exon 4688601 4688752 . + . gene_id "RvY_08121"; transcript_id "RvY_08121.1"; Scaffold003 rebuild exon 4688840 4688867 . + . gene_id "RvY_08121"; transcript_id "RvY_08121.1"; Scaffold003 rebuild exon 4689099 4689263 . + . gene_id "RvY_08121"; transcript_id "RvY_08121.1"; Scaffold003 rebuild transcript 4689949 4691436 . - . gene_id "RvY_08122"; transcript_id "RvY_08122.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4689949 4691436 . - . gene_id "RvY_08122"; transcript_id "RvY_08122.1"; Scaffold003 rebuild transcript 4692417 4693503 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4692417 4692954 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.1"; Scaffold003 rebuild exon 4693016 4693116 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.1"; Scaffold003 rebuild exon 4693348 4693503 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.1"; Scaffold003 rebuild transcript 4692417 4693528 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4692417 4692954 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.2"; Scaffold003 rebuild exon 4693016 4693116 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.2"; Scaffold003 rebuild exon 4693376 4693528 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.2"; Scaffold003 rebuild transcript 4692417 4693528 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4692417 4692890 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.3"; Scaffold003 rebuild exon 4692955 4693116 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.3"; Scaffold003 rebuild exon 4693376 4693528 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.3"; Scaffold003 rebuild transcript 4692417 4693076 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4692417 4693076 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.4"; Scaffold003 rebuild transcript 4692417 4693076 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.5"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4692417 4692885 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.5"; Scaffold003 rebuild exon 4692955 4693076 . + . gene_id "RvY_08123"; transcript_id "RvY_08123.5"; Scaffold003 rebuild transcript 4693560 4694197 . + . gene_id "RvY_08124"; transcript_id "RvY_08124.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4693560 4693875 . + . gene_id "RvY_08124"; transcript_id "RvY_08124.1"; Scaffold003 rebuild exon 4694136 4694197 . + . gene_id "RvY_08124"; transcript_id "RvY_08124.1"; Scaffold003 rebuild transcript 4697844 4698525 . - . gene_id "RvY_08125"; transcript_id "RvY_08125.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4697844 4698058 . - . gene_id "RvY_08125"; transcript_id "RvY_08125.1"; Scaffold003 rebuild exon 4698456 4698525 . - . gene_id "RvY_08125"; transcript_id "RvY_08125.1"; Scaffold003 rebuild transcript 4699313 4700893 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; gene_name "PH_phafin2"; annotation "hypothetical protein."; Pfam "[PH]|[FYVE] FYVE zinc finger"; CDD "Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes."; similar_genes "PKHF2_DANRE(e-value:5.5e-16;bit-score:82.0)"; Scaffold003 rebuild exon 4699313 4699325 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild exon 4699478 4699677 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild exon 4699885 4699957 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild exon 4700045 4700170 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild exon 4700233 4700339 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild exon 4700519 4700669 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild exon 4700730 4700893 . + . gene_id "RvY_08126"; transcript_id "RvY_08126.1"; Scaffold003 rebuild transcript 4701374 4703591 . - . gene_id "RvY_08127"; transcript_id "RvY_08127.1"; annotation "putative Protein BAT5"; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; similar_genes "BAT5_MACFA(e-value:3.3e-37;bit-score:153.0)"; Scaffold003 rebuild exon 4701374 4701636 . - . gene_id "RvY_08127"; transcript_id "RvY_08127.1"; Scaffold003 rebuild exon 4701699 4702028 . - . gene_id "RvY_08127"; transcript_id "RvY_08127.1"; Scaffold003 rebuild exon 4702290 4702671 . - . gene_id "RvY_08127"; transcript_id "RvY_08127.1"; Scaffold003 rebuild exon 4702868 4703431 . - . gene_id "RvY_08127"; transcript_id "RvY_08127.1"; Scaffold003 rebuild exon 4703526 4703591 . - . gene_id "RvY_08127"; transcript_id "RvY_08127.1"; Scaffold003 rebuild transcript 4704256 4707083 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; gene_name "GPI"; annotation "Glucose-6-phosphate isomerase"; Pfam "[PGI] Phosphoglucose isomerase"; CDD "glucose-6-phosphate isomerase; Reviewed"; EC "EC5.3.1.9"; KO "K01810"; similar_genes "G6PI_PIG(e-value:7.3e-175;bit-score:610.0)"; Scaffold003 rebuild exon 4704256 4704386 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4704447 4704540 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4704618 4704755 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4704972 4705250 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4705468 4705614 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4705725 4705889 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4705955 4706278 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4706457 4706661 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild exon 4706851 4707083 . + . gene_id "RvY_08128"; transcript_id "RvY_08128.1"; Scaffold003 rebuild transcript 4707817 4709511 . - . gene_id "RvY_08129"; transcript_id "RvY_08129.1"; annotation "hypothetical protein."; Pfam "[DUF2465]"; EC "EC2.1.1.-"; similar_genes "FBRL_DROER(e-value:4.6e-11;bit-score:66.0)"; Scaffold003 rebuild exon 4707817 4708197 . - . gene_id "RvY_08129"; transcript_id "RvY_08129.1"; Scaffold003 rebuild exon 4708481 4708871 . - . gene_id "RvY_08129"; transcript_id "RvY_08129.1"; Scaffold003 rebuild exon 4709120 4709511 . - . gene_id "RvY_08129"; transcript_id "RvY_08129.1"; Scaffold003 rebuild transcript 4710356 4710778 . + . gene_id "RvY_08130"; transcript_id "RvY_08130.1"; gene_name "NmrA"; annotation "hypothetical protein."; Pfam "[NmrA] NmrA-like family|[NAD_binding_10] NADH(P)-binding"; CDD "NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families."; Scaffold003 rebuild exon 4710356 4710778 . + . gene_id "RvY_08130"; transcript_id "RvY_08130.1"; Scaffold003 rebuild transcript 4711090 4711893 . + . gene_id "RvY_08131"; transcript_id "RvY_08131.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4711090 4711566 . + . gene_id "RvY_08131"; transcript_id "RvY_08131.1"; Scaffold003 rebuild exon 4711789 4711893 . + . gene_id "RvY_08131"; transcript_id "RvY_08131.1"; Scaffold003 rebuild transcript 4711909 4712886 . - . gene_id "RvY_08132"; transcript_id "RvY_08132.1"; gene_name "ML"; annotation "hypothetical protein."; Pfam "[E1_DerP2_DerF2] ML domain"; CDD "Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids."; Scaffold003 rebuild exon 4711909 4711989 . - . gene_id "RvY_08132"; transcript_id "RvY_08132.1"; Scaffold003 rebuild exon 4712265 4712524 . - . gene_id "RvY_08132"; transcript_id "RvY_08132.1"; Scaffold003 rebuild exon 4712589 4712672 . - . gene_id "RvY_08132"; transcript_id "RvY_08132.1"; Scaffold003 rebuild exon 4712739 4712886 . - . gene_id "RvY_08132"; transcript_id "RvY_08132.1"; Scaffold003 rebuild transcript 4713739 4714572 . - . gene_id "RvY_08133"; transcript_id "RvY_08133.1"; annotation "hypothetical protein."; Pfam "[Ctf8]"; Scaffold003 rebuild exon 4713739 4713951 . - . gene_id "RvY_08133"; transcript_id "RvY_08133.1"; Scaffold003 rebuild exon 4714284 4714464 . - . gene_id "RvY_08133"; transcript_id "RvY_08133.1"; Scaffold003 rebuild exon 4714550 4714572 . - . gene_id "RvY_08133"; transcript_id "RvY_08133.1"; Scaffold003 rebuild transcript 4714965 4715450 . + . gene_id "RvY_08134"; transcript_id "RvY_08134.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4714965 4715089 . + . gene_id "RvY_08134"; transcript_id "RvY_08134.1"; Scaffold003 rebuild exon 4715339 4715450 . + . gene_id "RvY_08134"; transcript_id "RvY_08134.1"; Scaffold003 rebuild transcript 4715752 4717137 . - . gene_id "RvY_08135"; transcript_id "RvY_08135.1"; gene_name "PPT"; annotation "palmitoyl-protein thioesterase [EC:3.1.2.22]"; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[DUF676] Putative serine esterase (DUF676)|[Palm_thioest] Palmitoyl protein thioesterase"; CDD "Palmitoyl protein thioesterase."; EC "EC3.1.2.-|EC3.1.2.22"; KO "K01074"; similar_genes "PPT2A_XENLA(e-value:2.3e-10;bit-score:63.0)"; Scaffold003 rebuild exon 4715752 4715808 . - . gene_id "RvY_08135"; transcript_id "RvY_08135.1"; Scaffold003 rebuild exon 4715884 4716224 . - . gene_id "RvY_08135"; transcript_id "RvY_08135.1"; Scaffold003 rebuild exon 4716310 4716395 . - . gene_id "RvY_08135"; transcript_id "RvY_08135.1"; Scaffold003 rebuild exon 4716666 4716748 . - . gene_id "RvY_08135"; transcript_id "RvY_08135.1"; Scaffold003 rebuild exon 4716814 4717137 . - . gene_id "RvY_08135"; transcript_id "RvY_08135.1"; Scaffold003 rebuild transcript 4718283 4719483 . - . gene_id "RvY_08136"; transcript_id "RvY_08136.1"; annotation "hypothetical protein."; Pfam "[DUF1649]"; Scaffold003 rebuild exon 4718283 4718478 . - . gene_id "RvY_08136"; transcript_id "RvY_08136.1"; Scaffold003 rebuild exon 4718822 4718925 . - . gene_id "RvY_08136"; transcript_id "RvY_08136.1"; Scaffold003 rebuild exon 4719025 4719196 . - . gene_id "RvY_08136"; transcript_id "RvY_08136.1"; Scaffold003 rebuild exon 4719284 4719483 . - . gene_id "RvY_08136"; transcript_id "RvY_08136.1"; Scaffold003 rebuild transcript 4721042 4723303 . + . gene_id "RvY_08137"; transcript_id "RvY_08137.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold003 rebuild exon 4721042 4721113 . + . gene_id "RvY_08137"; transcript_id "RvY_08137.1"; Scaffold003 rebuild exon 4721369 4721653 . + . gene_id "RvY_08137"; transcript_id "RvY_08137.1"; Scaffold003 rebuild exon 4721959 4722245 . + . gene_id "RvY_08137"; transcript_id "RvY_08137.1"; Scaffold003 rebuild exon 4722532 4723303 . + . gene_id "RvY_08137"; transcript_id "RvY_08137.1"; Scaffold003 rebuild transcript 4724144 4724671 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4724144 4724671 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.1"; Scaffold003 rebuild transcript 4724144 4725800 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4724144 4724583 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.2"; Scaffold003 rebuild exon 4725758 4725800 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.2"; Scaffold003 rebuild transcript 4725784 4727143 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4725784 4725836 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.3"; Scaffold003 rebuild exon 4726746 4726813 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.3"; Scaffold003 rebuild exon 4726998 4727143 . - . gene_id "RvY_08138"; transcript_id "RvY_08138.3"; Scaffold003 rebuild transcript 4726065 4729664 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold003 rebuild exon 4726065 4726239 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild exon 4726518 4726810 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild exon 4727028 4727192 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild exon 4727286 4727936 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild exon 4728218 4728420 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild exon 4728491 4729053 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild exon 4729333 4729664 . + . gene_id "RvY_08139"; transcript_id "RvY_08139.1"; Scaffold003 rebuild transcript 4731162 4731352 . + . gene_id "RvY_08140"; transcript_id "RvY_08140.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4731162 4731249 . + . gene_id "RvY_08140"; transcript_id "RvY_08140.1"; Scaffold003 rebuild exon 4731327 4731352 . + . gene_id "RvY_08140"; transcript_id "RvY_08140.1"; Scaffold003 rebuild transcript 4732263 4732595 . - . gene_id "RvY_08141"; transcript_id "RvY_08141.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4732263 4732595 . - . gene_id "RvY_08141"; transcript_id "RvY_08141.1"; Scaffold003 rebuild transcript 4733437 4733868 . - . gene_id "RvY_08142"; transcript_id "RvY_08142.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4733437 4733868 . - . gene_id "RvY_08142"; transcript_id "RvY_08142.1"; Scaffold003 rebuild transcript 4734661 4738756 . - . gene_id "RvY_08143"; transcript_id "RvY_08143.1"; gene_name "NEK"; annotation "Serine/threonine-protein kinase Nek1"; Pfam "[APH] Phosphotransferase enzyme family|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08857"; similar_genes "NEK1_MOUSE(e-value:1.8e-80;bit-score:296.0)"; Scaffold003 rebuild exon 4734661 4734923 . - . gene_id "RvY_08143"; transcript_id "RvY_08143.1"; Scaffold003 rebuild exon 4735170 4736433 . - . gene_id "RvY_08143"; transcript_id "RvY_08143.1"; Scaffold003 rebuild exon 4736713 4737126 . - . gene_id "RvY_08143"; transcript_id "RvY_08143.1"; Scaffold003 rebuild exon 4737461 4737879 . - . gene_id "RvY_08143"; transcript_id "RvY_08143.1"; Scaffold003 rebuild exon 4738240 4738756 . - . gene_id "RvY_08143"; transcript_id "RvY_08143.1"; Scaffold003 rebuild transcript 4740789 4741096 . + . gene_id "RvY_08144"; transcript_id "RvY_08144.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4740789 4740943 . + . gene_id "RvY_08144"; transcript_id "RvY_08144.1"; Scaffold003 rebuild exon 4741015 4741096 . + . gene_id "RvY_08144"; transcript_id "RvY_08144.1"; Scaffold003 rebuild transcript 4742401 4744303 . - . gene_id "RvY_08145"; transcript_id "RvY_08145.1"; annotation "hypothetical protein."; Pfam "[TUDOR] Tudor domain"; Scaffold003 rebuild exon 4742401 4742690 . - . gene_id "RvY_08145"; transcript_id "RvY_08145.1"; Scaffold003 rebuild exon 4742757 4742927 . - . gene_id "RvY_08145"; transcript_id "RvY_08145.1"; Scaffold003 rebuild exon 4743207 4743320 . - . gene_id "RvY_08145"; transcript_id "RvY_08145.1"; Scaffold003 rebuild exon 4743378 4743869 . - . gene_id "RvY_08145"; transcript_id "RvY_08145.1"; Scaffold003 rebuild exon 4744066 4744303 . - . gene_id "RvY_08145"; transcript_id "RvY_08145.1"; Scaffold003 rebuild transcript 4745237 4747008 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; Scaffold003 rebuild exon 4745237 4745419 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4745477 4745525 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4745811 4745952 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4746015 4746151 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4746235 4746314 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4746390 4746494 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4746573 4746659 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild exon 4746814 4747008 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.1"; Scaffold003 rebuild transcript 4745237 4747054 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; Scaffold003 rebuild exon 4745237 4745419 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4745477 4745525 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4745811 4745952 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4746015 4746151 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4746235 4746314 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4746390 4746494 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4746573 4746659 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4746814 4746972 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild exon 4747043 4747054 . + . gene_id "RvY_08146"; transcript_id "RvY_08146.2"; Scaffold003 rebuild transcript 4747233 4748743 . - . gene_id "RvY_08147"; transcript_id "RvY_08147.1"; annotation "hypothetical protein."; Pfam "[Tsg] Twisted gastrulation (Tsg) protein conserved region"; similar_genes "TSG_DROME(e-value:7.2e-16;bit-score:82.0)"; Scaffold003 rebuild exon 4747233 4747738 . - . gene_id "RvY_08147"; transcript_id "RvY_08147.1"; Scaffold003 rebuild exon 4748008 4748217 . - . gene_id "RvY_08147"; transcript_id "RvY_08147.1"; Scaffold003 rebuild exon 4748500 4748743 . - . gene_id "RvY_08147"; transcript_id "RvY_08147.1"; Scaffold003 rebuild transcript 4750319 4751569 . - . gene_id "RvY_08148"; transcript_id "RvY_08148.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4750319 4750752 . - . gene_id "RvY_08148"; transcript_id "RvY_08148.1"; Scaffold003 rebuild exon 4750861 4751569 . - . gene_id "RvY_08148"; transcript_id "RvY_08148.1"; Scaffold003 rebuild transcript 4752701 4759419 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; gene_name "PARD6"; annotation "Partitioning defective 6 homolog alpha"; Pfam "[PB1]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The Par6 protein contains a type II PB1 domain."; KO "K06093"; similar_genes "PAR6A_RAT(e-value:3.6e-51;bit-score:199.0)"; Scaffold003 rebuild exon 4752701 4752763 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; Scaffold003 rebuild exon 4753038 4753260 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; Scaffold003 rebuild exon 4757596 4757749 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; Scaffold003 rebuild exon 4758113 4758201 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; Scaffold003 rebuild exon 4758531 4758974 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; Scaffold003 rebuild exon 4759214 4759419 . + . gene_id "RvY_08149"; transcript_id "RvY_08149.1"; Scaffold003 rebuild transcript 4760166 4761020 . - . gene_id "RvY_08150"; transcript_id "RvY_08150.1"; gene_name "RP-S24e"; annotation "putative 40S ribosomal protein S24-B"; Pfam "[Ribosomal_S24e] Ribosomal protein S24e"; CDD "40S ribosomal protein S24; Provisional"; KO "K02974"; similar_genes "RS24B_SCHPO(e-value:3.3e-39;bit-score:159.0)"; Scaffold003 rebuild exon 4760166 4760285 . - . gene_id "RvY_08150"; transcript_id "RvY_08150.1"; Scaffold003 rebuild exon 4760615 4760824 . - . gene_id "RvY_08150"; transcript_id "RvY_08150.1"; Scaffold003 rebuild exon 4760891 4760962 . - . gene_id "RvY_08150"; transcript_id "RvY_08150.1"; Scaffold003 rebuild exon 4761018 4761020 . - . gene_id "RvY_08150"; transcript_id "RvY_08150.1"; Scaffold003 rebuild transcript 4761576 4762935 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; gene_name "NDUFV2"; annotation "NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial"; Pfam "[Complex1_24kDa] Respiratory-chain NADH dehydrogenase 24 Kd subunit"; CDD "NADH dehydrogenase subunit E; Validated"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03943"; similar_genes "NDUV2_RAT(e-value:4.3e-90;bit-score:328.0)"; Scaffold003 rebuild exon 4761576 4761626 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild exon 4761695 4761748 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild exon 4761835 4761897 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild exon 4761984 4762071 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild exon 4762151 4762348 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild exon 4762558 4762667 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild exon 4762765 4762935 . + . gene_id "RvY_08151"; transcript_id "RvY_08151.1"; Scaffold003 rebuild transcript 4763126 4767497 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; gene_name "(1,2)DPP4"; annotation "(1,2)dipeptidyl-peptidase 4 [EC:3.4.14.5](3)hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[DPPIV_N] Dipeptidyl peptidase IV (DPP IV) N-terminal region|[Peptidase_S9] Prolyl oligopeptidase family"; EC "EC3.4.14.5"; KO "(1,2)K01278"; similar_genes "DPP4_RAT(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 4763126 4763245 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4763311 4763384 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4763464 4763610 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4763683 4763788 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4763865 4764193 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4764451 4764797 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4765074 4765270 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4765329 4765488 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4765578 4765699 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4765886 4766055 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4766312 4766624 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4766695 4766778 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4766987 4767075 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4767152 4767250 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild exon 4767326 4767497 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.1"; Scaffold003 rebuild transcript 4763126 4768615 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; gene_name "(1,2)DPP4"; annotation "(1,2)dipeptidyl-peptidase 4 [EC:3.4.14.5](3)hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[DPPIV_N] Dipeptidyl peptidase IV (DPP IV) N-terminal region|[Peptidase_S9] Prolyl oligopeptidase family"; EC "EC3.4.14.5"; KO "(1,2)K01278"; similar_genes "DPP4_RAT(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 4763126 4763245 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4763311 4763384 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4763464 4763610 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4763683 4763788 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4763865 4764193 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4764451 4764797 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4765074 4765270 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4765329 4765488 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4765578 4765699 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4765886 4766055 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4766312 4766624 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4766695 4766778 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4766987 4767075 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4767152 4767250 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4767326 4767440 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild exon 4768562 4768615 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.2"; Scaffold003 rebuild transcript 4763126 4770224 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; gene_name "(1,2)DPP4"; annotation "(1,2)dipeptidyl-peptidase 4 [EC:3.4.14.5](3)hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[DPPIV_N] Dipeptidyl peptidase IV (DPP IV) N-terminal region|[Peptidase_S9] Prolyl oligopeptidase family"; EC "EC3.4.14.5"; KO "(1,2)K01278"; similar_genes "DPP4_RAT(e-value:2.3e-08;bit-score:57.0)"; Scaffold003 rebuild exon 4763126 4763245 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4763311 4763384 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4763464 4763610 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4763683 4763788 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4763865 4764193 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4764451 4764797 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4765074 4765270 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4765329 4765488 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4765578 4765699 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4765886 4766055 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4766312 4766624 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4766695 4766778 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4766987 4767075 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4767152 4767250 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4767326 4767440 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild exon 4770192 4770224 . - . gene_id "RvY_08152"; transcript_id "RvY_08152.3"; Scaffold003 rebuild transcript 4774434 4775524 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4774434 4774642 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.1"; Scaffold003 rebuild exon 4775096 4775250 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.1"; Scaffold003 rebuild exon 4775342 4775411 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.1"; Scaffold003 rebuild exon 4775485 4775524 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.1"; Scaffold003 rebuild transcript 4774434 4775216 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4774434 4774642 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.2"; Scaffold003 rebuild exon 4775093 4775216 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.2"; Scaffold003 rebuild transcript 4774926 4775524 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4774926 4774975 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.3"; Scaffold003 rebuild exon 4775096 4775253 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.3"; Scaffold003 rebuild exon 4775342 4775411 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.3"; Scaffold003 rebuild exon 4775485 4775524 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.3"; Scaffold003 rebuild transcript 4774507 4775216 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4774507 4774642 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.4"; Scaffold003 rebuild exon 4775095 4775216 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.4"; Scaffold003 rebuild transcript 4774434 4775143 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.5"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4774434 4774642 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.5"; Scaffold003 rebuild exon 4775095 4775143 . - . gene_id "RvY_08153"; transcript_id "RvY_08153.5"; Scaffold003 rebuild transcript 4774537 4775575 . + . gene_id "RvY_08154"; transcript_id "RvY_08154.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4774537 4774611 . + . gene_id "RvY_08154"; transcript_id "RvY_08154.1"; Scaffold003 rebuild exon 4775378 4775575 . + . gene_id "RvY_08154"; transcript_id "RvY_08154.1"; Scaffold003 rebuild transcript 4777808 4779117 . + . gene_id "RvY_08155"; transcript_id "RvY_08155.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4777808 4778555 . + . gene_id "RvY_08155"; transcript_id "RvY_08155.1"; Scaffold003 rebuild exon 4778615 4778767 . + . gene_id "RvY_08155"; transcript_id "RvY_08155.1"; Scaffold003 rebuild exon 4779083 4779117 . + . gene_id "RvY_08155"; transcript_id "RvY_08155.1"; Scaffold003 rebuild transcript 4779416 4782464 . - . gene_id "RvY_08156"; transcript_id "RvY_08156.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4779416 4780872 . - . gene_id "RvY_08156"; transcript_id "RvY_08156.1"; Scaffold003 rebuild exon 4781199 4781755 . - . gene_id "RvY_08156"; transcript_id "RvY_08156.1"; Scaffold003 rebuild exon 4782013 4782137 . - . gene_id "RvY_08156"; transcript_id "RvY_08156.1"; Scaffold003 rebuild exon 4782198 4782464 . - . gene_id "RvY_08156"; transcript_id "RvY_08156.1"; Scaffold003 rebuild transcript 4783424 4784615 . + . gene_id "RvY_08157"; transcript_id "RvY_08157.1"; annotation "hypothetical protein."; Pfam "[DJ-1_PfpI] DJ-1/PfpI family"; Scaffold003 rebuild exon 4783424 4783841 . + . gene_id "RvY_08157"; transcript_id "RvY_08157.1"; Scaffold003 rebuild exon 4784089 4784615 . + . gene_id "RvY_08157"; transcript_id "RvY_08157.1"; Scaffold003 rebuild transcript 4785233 4786522 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; gene_name "hpt"; annotation "hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]"; Pfam "[Pribosyltran] Phosphoribosyl transferase domain"; CDD "hypoxanthine phosphoribosyltransferase; Provisional"; EC "EC2.4.2.8"; KO "K00760"; similar_genes "PRDC1_HUMAN(e-value:9.1e-12;bit-score:68.0)"; Scaffold003 rebuild exon 4785233 4785286 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild exon 4785373 4785449 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild exon 4785534 4785589 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild exon 4785675 4785775 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild exon 4785855 4786215 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild exon 4786287 4786393 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild exon 4786475 4786522 . - . gene_id "RvY_08158"; transcript_id "RvY_08158.1"; Scaffold003 rebuild transcript 4787488 4791867 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; gene_name "HNRNPL"; annotation "putative Heterogeneous nuclear ribonucleoprotein L"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067)."; KO "K13159"; similar_genes "HNRPL_HUMAN(e-value:4.0e-29;bit-score:126.0)"; Scaffold003 rebuild exon 4787488 4787610 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4787669 4787735 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4787808 4787871 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4787941 4787989 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4788051 4788080 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4788246 4788398 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4788588 4788770 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4789049 4789109 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4789874 4790126 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4790393 4790582 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4790764 4790885 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4790949 4791153 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4791231 4791285 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4791590 4791685 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild exon 4791764 4791867 . + . gene_id "RvY_08159"; transcript_id "RvY_08159.1"; Scaffold003 rebuild transcript 4792212 4794056 . + . gene_id "RvY_08160"; transcript_id "RvY_08160.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4792212 4792999 . + . gene_id "RvY_08160"; transcript_id "RvY_08160.1"; Scaffold003 rebuild exon 4793792 4794056 . + . gene_id "RvY_08160"; transcript_id "RvY_08160.1"; Scaffold003 rebuild transcript 4794786 4796073 . - . gene_id "RvY_08161"; transcript_id "RvY_08161.1"; annotation "hypothetical protein."; Pfam "[SHIPPO-rpt] Sperm-tail PG-rich repeat"; Scaffold003 rebuild exon 4794786 4795083 . - . gene_id "RvY_08161"; transcript_id "RvY_08161.1"; Scaffold003 rebuild exon 4795148 4795338 . - . gene_id "RvY_08161"; transcript_id "RvY_08161.1"; Scaffold003 rebuild exon 4795712 4795836 . - . gene_id "RvY_08161"; transcript_id "RvY_08161.1"; Scaffold003 rebuild exon 4795914 4796073 . - . gene_id "RvY_08161"; transcript_id "RvY_08161.1"; Scaffold003 rebuild transcript 4796144 4796452 . - . gene_id "RvY_08162"; transcript_id "RvY_08162.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4796144 4796452 . - . gene_id "RvY_08162"; transcript_id "RvY_08162.1"; Scaffold003 rebuild transcript 4797109 4797540 . + . gene_id "RvY_08163"; transcript_id "RvY_08163.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4797109 4797540 . + . gene_id "RvY_08163"; transcript_id "RvY_08163.1"; Scaffold003 rebuild transcript 4797562 4799273 . - . gene_id "RvY_08164"; transcript_id "RvY_08164.1"; gene_name "K00599"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain|[COX17] Cytochrome C oxidase copper chaperone (COX17)"; EC "EC2.1.1.-"; KO "K00599"; similar_genes "METL6_PONAB(e-value:8.8e-25;bit-score:111.0)"; Scaffold003 rebuild exon 4797562 4797707 . - . gene_id "RvY_08164"; transcript_id "RvY_08164.1"; Scaffold003 rebuild exon 4797982 4798291 . - . gene_id "RvY_08164"; transcript_id "RvY_08164.1"; Scaffold003 rebuild exon 4798583 4798920 . - . gene_id "RvY_08164"; transcript_id "RvY_08164.1"; Scaffold003 rebuild exon 4799084 4799273 . - . gene_id "RvY_08164"; transcript_id "RvY_08164.1"; Scaffold003 rebuild transcript 4799855 4800415 . - . gene_id "RvY_08165"; transcript_id "RvY_08165.1"; gene_name "RP-L27Ae"; annotation "putative 60S ribosomal protein L27a"; Pfam "[Ribosomal_L18e] Ribosomal protein L18e/L15"; CDD "60S ribosomal protein L27; Provisional"; KO "K02900"; similar_genes "RL27A_RAT(e-value:1.5e-39;bit-score:160.0)"; Scaffold003 rebuild exon 4799855 4800150 . - . gene_id "RvY_08165"; transcript_id "RvY_08165.1"; Scaffold003 rebuild exon 4800262 4800415 . - . gene_id "RvY_08165"; transcript_id "RvY_08165.1"; Scaffold003 rebuild transcript 4801092 4805071 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "(1)Y2056_DICDI(e-value:1.4e-16;bit-score:84.0)"; Scaffold003 rebuild exon 4801092 4801751 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4801896 4802271 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4802329 4802594 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4802873 4803314 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4803394 4803586 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4803661 4803788 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4803856 4803934 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4804016 4804503 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4804770 4804930 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild exon 4804994 4805071 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.1"; Scaffold003 rebuild transcript 4801092 4804020 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "(1)Y2056_DICDI(e-value:1.4e-16;bit-score:84.0)"; Scaffold003 rebuild exon 4801092 4801751 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild exon 4801896 4802271 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild exon 4802329 4802594 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild exon 4802873 4803314 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild exon 4803394 4803586 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild exon 4803661 4803788 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild exon 4804016 4804020 . + . gene_id "RvY_08166"; transcript_id "RvY_08166.2"; Scaffold003 rebuild transcript 4805800 4806350 . + . gene_id "RvY_08167"; transcript_id "RvY_08167.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4805800 4805920 . + . gene_id "RvY_08167"; transcript_id "RvY_08167.1"; Scaffold003 rebuild exon 4805995 4806350 . + . gene_id "RvY_08167"; transcript_id "RvY_08167.1"; Scaffold003 rebuild transcript 4806807 4807553 . - . gene_id "RvY_08168"; transcript_id "RvY_08168.1"; gene_name "ThTPase"; annotation "hypothetical protein."; Pfam "[CYTH]"; CDD "Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique Scaffold003 rebuild exon 4806807 4806853 . - . gene_id "RvY_08168"; transcript_id "RvY_08168.1"; Scaffold003 rebuild exon 4806971 4807553 . - . gene_id "RvY_08168"; transcript_id "RvY_08168.1"; Scaffold003 rebuild transcript 4813933 4814142 . - . gene_id "RvY_08169"; transcript_id "RvY_08169.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4813933 4814142 . - . gene_id "RvY_08169"; transcript_id "RvY_08169.1"; Scaffold003 rebuild transcript 4814942 4815437 . + . gene_id "RvY_08170"; transcript_id "RvY_08170.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4814942 4815052 . + . gene_id "RvY_08170"; transcript_id "RvY_08170.1"; Scaffold003 rebuild exon 4815342 4815437 . + . gene_id "RvY_08170"; transcript_id "RvY_08170.1"; Scaffold003 rebuild transcript 4822830 4823210 . + . gene_id "RvY_08171"; transcript_id "RvY_08171.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4822830 4823210 . + . gene_id "RvY_08171"; transcript_id "RvY_08171.1"; Scaffold003 rebuild transcript 4828924 4829127 . + . gene_id "RvY_08172"; transcript_id "RvY_08172.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4828924 4829127 . + . gene_id "RvY_08172"; transcript_id "RvY_08172.1"; Scaffold003 rebuild transcript 4832704 4844466 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; gene_name "ATBF1"; annotation "Zinc finger homeobox protein 3"; Pfam "[Homeobox_KN] Homeobox KN domain|[zf-C2H2] Zinc finger, C2H2 type|[zf-met] Zinc-finger of C2H2 type|[Homeobox]"; KO "K09378"; similar_genes "ZFHX3_HUMAN(e-value:3.0e-59;bit-score:226.0)"; Scaffold003 rebuild exon 4832704 4833141 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4833392 4834286 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4834426 4835042 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4835282 4835743 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4836116 4836545 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4837224 4837774 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4838200 4839051 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4839262 4840440 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4840642 4841380 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4841590 4841870 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4841985 4842500 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4842652 4843228 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4843650 4843993 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild exon 4844302 4844466 . + . gene_id "RvY_08173"; transcript_id "RvY_08173.1"; Scaffold003 rebuild transcript 4846444 4846749 . - . gene_id "RvY_08174"; transcript_id "RvY_08174.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4846444 4846749 . - . gene_id "RvY_08174"; transcript_id "RvY_08174.1"; Scaffold003 rebuild transcript 4847388 4848854 . + . gene_id "RvY_08175"; transcript_id "RvY_08175.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold003 rebuild exon 4847388 4847994 . + . gene_id "RvY_08175"; transcript_id "RvY_08175.1"; Scaffold003 rebuild exon 4848349 4848854 . + . gene_id "RvY_08175"; transcript_id "RvY_08175.1"; Scaffold003 rebuild transcript 4849162 4850998 . - . gene_id "RvY_08176"; transcript_id "RvY_08176.1"; gene_name "VPS72"; annotation "vacuolar protein sorting-associated protein 72"; Pfam "[YL1_C] YL1 nuclear protein C-terminal domain|[YL1] YL1 nuclear protein"; KO "K11664"; Scaffold003 rebuild exon 4849162 4849591 . - . gene_id "RvY_08176"; transcript_id "RvY_08176.1"; Scaffold003 rebuild exon 4849862 4849994 . - . gene_id "RvY_08176"; transcript_id "RvY_08176.1"; Scaffold003 rebuild exon 4850078 4850257 . - . gene_id "RvY_08176"; transcript_id "RvY_08176.1"; Scaffold003 rebuild exon 4850427 4850829 . - . gene_id "RvY_08176"; transcript_id "RvY_08176.1"; Scaffold003 rebuild exon 4850888 4850998 . - . gene_id "RvY_08176"; transcript_id "RvY_08176.1"; Scaffold003 rebuild transcript 4851966 4852163 . + . gene_id "RvY_08177"; transcript_id "RvY_08177.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4851966 4852163 . + . gene_id "RvY_08177"; transcript_id "RvY_08177.1"; Scaffold003 rebuild transcript 4852451 4852996 . - . gene_id "RvY_08178"; transcript_id "RvY_08178.1"; annotation "hypothetical protein."; Pfam "[TRAPP] Transport protein particle (TRAPP) component"; similar_genes "TPPC3_CHICK(e-value:1.7e-19;bit-score:94.0)"; Scaffold003 rebuild exon 4852451 4852996 . - . gene_id "RvY_08178"; transcript_id "RvY_08178.1"; Scaffold003 rebuild transcript 4853415 4853731 . + . gene_id "RvY_08179"; transcript_id "RvY_08179.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4853415 4853620 . + . gene_id "RvY_08179"; transcript_id "RvY_08179.1"; Scaffold003 rebuild exon 4853716 4853731 . + . gene_id "RvY_08179"; transcript_id "RvY_08179.1"; Scaffold003 rebuild transcript 4853774 4854244 . + . gene_id "RvY_08180"; transcript_id "RvY_08180.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4853774 4854244 . + . gene_id "RvY_08180"; transcript_id "RvY_08180.1"; Scaffold003 rebuild transcript 4855372 4859528 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; gene_name "TOP1"; annotation "DNA topoisomerase 1"; Pfam "[Topo_C_assoc] C-terminal topoisomerase domain|[Topoisom_I] Eukaryotic DNA topoisomerase I, catalytic core|[Topoisom_I_N] Eukaryotic DNA topoisomerase I, DNA binding fragment"; CDD "DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras"; EC "EC5.99.1.2"; KO "K03163"; similar_genes "TOP1_MOUSE(e-value:4.7e-206;bit-score:714.0)"; Scaffold003 rebuild exon 4855372 4855474 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4855829 4856174 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4856266 4856380 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4856444 4856698 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4857053 4857277 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4857671 4857922 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4858188 4858310 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4858375 4858496 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4858682 4859369 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild exon 4859472 4859528 . - . gene_id "RvY_08181"; transcript_id "RvY_08181.1"; Scaffold003 rebuild transcript 4864433 4871355 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; gene_name "(1,2)HMG-box"; annotation "(1,2)putative Thymocyte selection-associated high mobility group box protein TOX(3)hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "(1,2)High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions."; similar_genes "(1,2)TOX_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold003 rebuild exon 4864433 4864564 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4868323 4868412 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4869042 4869638 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4869699 4869805 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4869877 4870012 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4870286 4870588 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4870866 4870996 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild exon 4871286 4871355 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.1"; Scaffold003 rebuild transcript 4865897 4871355 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; gene_name "(1,2)HMG-box"; annotation "(1,2)putative Thymocyte selection-associated high mobility group box protein TOX(3)hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "(1,2)High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions."; similar_genes "(1,2)TOX_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold003 rebuild exon 4865897 4865917 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4868323 4868412 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4869042 4869638 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4869699 4869805 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4869877 4870012 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4870286 4870588 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4870866 4870996 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild exon 4871286 4871355 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.2"; Scaffold003 rebuild transcript 4864433 4869686 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.3"; gene_name "(1,2)HMG-box"; annotation "(1,2)putative Thymocyte selection-associated high mobility group box protein TOX(3)hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "(1,2)High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions."; similar_genes "(1,2)TOX_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold003 rebuild exon 4864433 4864564 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.3"; Scaffold003 rebuild exon 4868323 4868412 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.3"; Scaffold003 rebuild exon 4869042 4869686 . + . gene_id "RvY_08182"; transcript_id "RvY_08182.3"; Scaffold003 rebuild transcript 4871716 4873705 . - . gene_id "RvY_08183"; transcript_id "RvY_08183.1"; gene_name "PIGM"; annotation "phosphatidylinositol glycan, class M [EC:2.4.1.-]"; Pfam "[Mannosyl_trans] Mannosyltransferase (PIG-M)|[PIG-U] GPI transamidase subunit PIG-U|[DUF2029]"; CDD "Mannosyltransferase (PIG-M). PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilize nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates."; EC "EC2.4.1.-"; KO "K05284"; similar_genes "PIGM_MACFA(e-value:3.3e-20;bit-score:96.0)"; Scaffold003 rebuild exon 4871716 4872066 . - . gene_id "RvY_08183"; transcript_id "RvY_08183.1"; Scaffold003 rebuild exon 4872357 4873142 . - . gene_id "RvY_08183"; transcript_id "RvY_08183.1"; Scaffold003 rebuild exon 4873484 4873705 . - . gene_id "RvY_08183"; transcript_id "RvY_08183.1"; Scaffold003 rebuild transcript 4875761 4876236 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4875761 4875893 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.1"; Scaffold003 rebuild exon 4875998 4876078 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.1"; Scaffold003 rebuild exon 4876133 4876236 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.1"; Scaffold003 rebuild transcript 4875761 4876264 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4875761 4875893 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.2"; Scaffold003 rebuild exon 4875998 4876078 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.2"; Scaffold003 rebuild exon 4876206 4876264 . - . gene_id "RvY_08184"; transcript_id "RvY_08184.2"; Scaffold003 rebuild transcript 4876841 4878054 . + . gene_id "RvY_08185"; transcript_id "RvY_08185.1"; gene_name "GBL"; annotation "G protein beta subunit-like"; Pfam "[WD40] WD domain, G-beta repeat|[Nucleoporin_N] Nup133 N terminal like"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K08266"; similar_genes "LST8_MOUSE(e-value:9.5e-18;bit-score:88.0)"; Scaffold003 rebuild exon 4876841 4877144 . + . gene_id "RvY_08185"; transcript_id "RvY_08185.1"; Scaffold003 rebuild exon 4877203 4877466 . + . gene_id "RvY_08185"; transcript_id "RvY_08185.1"; Scaffold003 rebuild exon 4877663 4878054 . + . gene_id "RvY_08185"; transcript_id "RvY_08185.1"; Scaffold003 rebuild transcript 4878099 4879895 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; gene_name "Coatomer_E"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[PPR] PPR repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[Coatomer_E] Coatomer epsilon subunit|[PPR_2] PPR repeat family"; CDD "Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex."; similar_genes "COPE1_ARATH(e-value:5.1e-08;bit-score:56.0)"; Scaffold003 rebuild exon 4878099 4878152 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4878230 4878373 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4878445 4878600 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4878692 4878773 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4878860 4878913 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4879012 4879061 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4879140 4879245 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4879536 4879720 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild exon 4879794 4879895 . - . gene_id "RvY_08186"; transcript_id "RvY_08186.1"; Scaffold003 rebuild transcript 4880522 4881829 . - . gene_id "RvY_08187"; transcript_id "RvY_08187.1"; gene_name "rplX"; annotation "hypothetical protein."; Pfam "[KOW] KOW motif"; CDD "50S ribosomal protein L24; Reviewed"; similar_genes "RM24_XENLA(e-value:4.0e-10;bit-score:63.0)"; Scaffold003 rebuild exon 4880522 4880658 . - . gene_id "RvY_08187"; transcript_id "RvY_08187.1"; Scaffold003 rebuild exon 4880748 4880884 . - . gene_id "RvY_08187"; transcript_id "RvY_08187.1"; Scaffold003 rebuild exon 4881118 4881224 . - . gene_id "RvY_08187"; transcript_id "RvY_08187.1"; Scaffold003 rebuild exon 4881298 4881393 . - . gene_id "RvY_08187"; transcript_id "RvY_08187.1"; Scaffold003 rebuild exon 4881446 4881829 . - . gene_id "RvY_08187"; transcript_id "RvY_08187.1"; Scaffold003 rebuild transcript 4882570 4883172 . - . gene_id "RvY_08188"; transcript_id "RvY_08188.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4882570 4882746 . - . gene_id "RvY_08188"; transcript_id "RvY_08188.1"; Scaffold003 rebuild exon 4882935 4883000 . - . gene_id "RvY_08188"; transcript_id "RvY_08188.1"; Scaffold003 rebuild exon 4883065 4883172 . - . gene_id "RvY_08188"; transcript_id "RvY_08188.1"; Scaffold003 rebuild transcript 4886112 4887980 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold003 rebuild exon 4886112 4886165 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; Scaffold003 rebuild exon 4886363 4886458 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; Scaffold003 rebuild exon 4886560 4886695 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; Scaffold003 rebuild exon 4887148 4887226 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; Scaffold003 rebuild exon 4887340 4887475 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; Scaffold003 rebuild exon 4887588 4887980 . + . gene_id "RvY_08189"; transcript_id "RvY_08189.1"; Scaffold003 rebuild transcript 4889571 4889792 . - . gene_id "RvY_08190"; transcript_id "RvY_08190.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4889571 4889792 . - . gene_id "RvY_08190"; transcript_id "RvY_08190.1"; Scaffold003 rebuild transcript 4889797 4889964 . + . gene_id "RvY_08191"; transcript_id "RvY_08191.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4889797 4889964 . + . gene_id "RvY_08191"; transcript_id "RvY_08191.1"; Scaffold003 rebuild transcript 4891025 4892870 . + . gene_id "RvY_08192"; transcript_id "RvY_08192.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4891025 4891325 . + . gene_id "RvY_08192"; transcript_id "RvY_08192.1"; Scaffold003 rebuild exon 4891521 4891623 . + . gene_id "RvY_08192"; transcript_id "RvY_08192.1"; Scaffold003 rebuild exon 4891720 4891924 . + . gene_id "RvY_08192"; transcript_id "RvY_08192.1"; Scaffold003 rebuild exon 4892193 4892870 . + . gene_id "RvY_08192"; transcript_id "RvY_08192.1"; Scaffold003 rebuild transcript 4893273 4894712 . - . gene_id "RvY_08193"; transcript_id "RvY_08193.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4893273 4893477 . - . gene_id "RvY_08193"; transcript_id "RvY_08193.1"; Scaffold003 rebuild exon 4893642 4894325 . - . gene_id "RvY_08193"; transcript_id "RvY_08193.1"; Scaffold003 rebuild exon 4894492 4894712 . - . gene_id "RvY_08193"; transcript_id "RvY_08193.1"; Scaffold003 rebuild transcript 4895358 4895567 . - . gene_id "RvY_08194"; transcript_id "RvY_08194.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4895358 4895567 . - . gene_id "RvY_08194"; transcript_id "RvY_08194.1"; Scaffold003 rebuild transcript 4896130 4900530 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold003 rebuild exon 4896130 4896160 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild exon 4896608 4896902 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild exon 4897108 4897219 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild exon 4898238 4898453 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild exon 4898735 4899128 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild exon 4899218 4899518 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild exon 4900053 4900530 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.1"; Scaffold003 rebuild transcript 4896130 4899432 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold003 rebuild exon 4896130 4896160 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; Scaffold003 rebuild exon 4896608 4896902 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; Scaffold003 rebuild exon 4897108 4897219 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; Scaffold003 rebuild exon 4898238 4898453 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; Scaffold003 rebuild exon 4898735 4899128 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; Scaffold003 rebuild exon 4899218 4899432 . - . gene_id "RvY_08195"; transcript_id "RvY_08195.2"; Scaffold003 rebuild transcript 4902611 4903850 . + . gene_id "RvY_08196"; transcript_id "RvY_08196.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold003 rebuild exon 4902611 4902667 . + . gene_id "RvY_08196"; transcript_id "RvY_08196.1"; Scaffold003 rebuild exon 4902940 4903218 . + . gene_id "RvY_08196"; transcript_id "RvY_08196.1"; Scaffold003 rebuild exon 4903311 4903850 . + . gene_id "RvY_08196"; transcript_id "RvY_08196.1"; Scaffold003 rebuild transcript 4904673 4905379 . + . gene_id "RvY_08197"; transcript_id "RvY_08197.1"; annotation "hypothetical protein."; Pfam "[Dynein_light] Dynein light chain type 1"; Scaffold003 rebuild exon 4904673 4904789 . + . gene_id "RvY_08197"; transcript_id "RvY_08197.1"; Scaffold003 rebuild exon 4904873 4904956 . + . gene_id "RvY_08197"; transcript_id "RvY_08197.1"; Scaffold003 rebuild exon 4905236 4905379 . + . gene_id "RvY_08197"; transcript_id "RvY_08197.1"; Scaffold003 rebuild transcript 4906420 4907711 . + . gene_id "RvY_08198"; transcript_id "RvY_08198.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4906420 4906642 . + . gene_id "RvY_08198"; transcript_id "RvY_08198.1"; Scaffold003 rebuild exon 4906709 4906972 . + . gene_id "RvY_08198"; transcript_id "RvY_08198.1"; Scaffold003 rebuild exon 4907320 4907711 . + . gene_id "RvY_08198"; transcript_id "RvY_08198.1"; Scaffold003 rebuild transcript 4908437 4913149 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold003 rebuild exon 4908437 4908451 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4908600 4908739 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4909320 4909869 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4910148 4910324 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4910523 4910720 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4911008 4911496 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4911698 4911800 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4911873 4911937 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4912034 4912224 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4912301 4912378 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4912570 4912635 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4912718 4912932 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild exon 4912992 4913149 . - . gene_id "RvY_08199"; transcript_id "RvY_08199.1"; Scaffold003 rebuild transcript 4917368 4921586 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.1"; gene_name "Ig1_Necl-1-3_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[V-set] Immunoglobulin V-set domain"; CDD "First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells."; Scaffold003 rebuild exon 4917368 4917500 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.1"; Scaffold003 rebuild exon 4920468 4920679 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.1"; Scaffold003 rebuild exon 4920989 4921157 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.1"; Scaffold003 rebuild exon 4921231 4921275 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.1"; Scaffold003 rebuild exon 4921363 4921586 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.1"; Scaffold003 rebuild transcript 4920518 4921586 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.2"; gene_name "Ig1_Necl-1-3_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[V-set] Immunoglobulin V-set domain"; CDD "First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells."; Scaffold003 rebuild exon 4920518 4920679 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.2"; Scaffold003 rebuild exon 4920989 4921157 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.2"; Scaffold003 rebuild exon 4921231 4921275 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.2"; Scaffold003 rebuild exon 4921432 4921586 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.2"; Scaffold003 rebuild transcript 4920425 4921378 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.3"; gene_name "Ig1_Necl-1-3_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[V-set] Immunoglobulin V-set domain"; CDD "First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells."; Scaffold003 rebuild exon 4920425 4920679 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.3"; Scaffold003 rebuild exon 4920989 4921157 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.3"; Scaffold003 rebuild exon 4921231 4921275 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.3"; Scaffold003 rebuild exon 4921356 4921378 . + . gene_id "RvY_08200"; transcript_id "RvY_08200.3"; Scaffold003 rebuild transcript 4921854 4922219 . - . gene_id "RvY_08201"; transcript_id "RvY_08201.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4921854 4922219 . - . gene_id "RvY_08201"; transcript_id "RvY_08201.1"; Scaffold003 rebuild transcript 4922272 4922674 . - . gene_id "RvY_08202"; transcript_id "RvY_08202.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4922272 4922482 . - . gene_id "RvY_08202"; transcript_id "RvY_08202.1"; Scaffold003 rebuild exon 4922592 4922674 . - . gene_id "RvY_08202"; transcript_id "RvY_08202.1"; Scaffold003 rebuild transcript 4928313 4929080 . - . gene_id "RvY_08203"; transcript_id "RvY_08203.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4928313 4928489 . - . gene_id "RvY_08203"; transcript_id "RvY_08203.1"; Scaffold003 rebuild exon 4928967 4929080 . - . gene_id "RvY_08203"; transcript_id "RvY_08203.1"; Scaffold003 rebuild transcript 4930484 4930753 . - . gene_id "RvY_08204"; transcript_id "RvY_08204.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4930484 4930753 . - . gene_id "RvY_08204"; transcript_id "RvY_08204.1"; Scaffold003 rebuild transcript 4931250 4931638 . - . gene_id "RvY_08205"; transcript_id "RvY_08205.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4931250 4931459 . - . gene_id "RvY_08205"; transcript_id "RvY_08205.1"; Scaffold003 rebuild exon 4931546 4931638 . - . gene_id "RvY_08205"; transcript_id "RvY_08205.1"; Scaffold003 rebuild transcript 4935019 4935678 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4935019 4935437 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.1"; Scaffold003 rebuild exon 4935495 4935678 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.1"; Scaffold003 rebuild transcript 4932160 4932621 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4932160 4932544 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.2"; Scaffold003 rebuild exon 4932602 4932621 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.2"; Scaffold003 rebuild transcript 4932160 4935514 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.3"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4932160 4932544 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.3"; Scaffold003 rebuild exon 4935495 4935514 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.3"; Scaffold003 rebuild transcript 4935089 4935514 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.4"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4935089 4935437 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.4"; Scaffold003 rebuild exon 4935495 4935514 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.4"; Scaffold003 rebuild transcript 4935057 4935422 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.5"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4935057 4935422 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.5"; Scaffold003 rebuild transcript 4932182 4932529 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.6"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4932182 4932529 . - . gene_id "RvY_08206"; transcript_id "RvY_08206.6"; Scaffold003 rebuild transcript 4937166 4938863 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; annotation "hypothetical protein."; Pfam "[IFT46_B_C] Intraflagellar transport complex B protein 46 C terminal"; Scaffold003 rebuild exon 4937166 4937397 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild exon 4937490 4937596 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild exon 4937661 4937795 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild exon 4938124 4938175 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild exon 4938243 4938337 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild exon 4938452 4938525 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild exon 4938665 4938863 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.1"; Scaffold003 rebuild transcript 4937102 4938863 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; annotation "hypothetical protein."; Pfam "[IFT46_B_C] Intraflagellar transport complex B protein 46 C terminal"; Scaffold003 rebuild exon 4937102 4937193 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4937273 4937397 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4937490 4937596 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4937661 4937795 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4938124 4938175 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4938243 4938337 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4938452 4938525 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild exon 4938665 4938863 . - . gene_id "RvY_08207"; transcript_id "RvY_08207.2"; Scaffold003 rebuild transcript 4939546 4940928 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; gene_name "COG1590"; annotation "hypothetical protein."; Pfam "[TYW3] Methyltransferase TYW3"; CDD "Uncharacterized conserved protein [Function unknown]"; EC "EC2.1.1.-"; KO "K15450"; similar_genes "TYW3_XENLA(e-value:1.0e-12;bit-score:71.0)"; Scaffold003 rebuild exon 4939546 4939633 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild exon 4939765 4939829 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild exon 4939936 4940004 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild exon 4940083 4940166 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild exon 4940234 4940350 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild exon 4940558 4940629 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild exon 4940692 4940928 . - . gene_id "RvY_08208"; transcript_id "RvY_08208.1"; Scaffold003 rebuild transcript 4939949 4940181 . + . gene_id "RvY_08209"; transcript_id "RvY_08209.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4939949 4940035 . + . gene_id "RvY_08209"; transcript_id "RvY_08209.1"; Scaffold003 rebuild exon 4940071 4940181 . + . gene_id "RvY_08209"; transcript_id "RvY_08209.1"; Scaffold003 rebuild transcript 4941310 4941957 . + . gene_id "RvY_08210"; transcript_id "RvY_08210.1"; gene_name "TRPT1"; annotation "2'-phosphotransferase [EC:2.7.1.160]"; Pfam "[PTS_2-RNA] RNA 2'-phosphotransferase, Tpt1 / KptA family"; CDD "2'-phosphotransferase; Provisional"; EC "EC2.7.1.160"; KO "K10669"; Scaffold003 rebuild exon 4941310 4941957 . + . gene_id "RvY_08210"; transcript_id "RvY_08210.1"; Scaffold003 rebuild transcript 4942719 4949758 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; gene_name "TESK2"; annotation "putative Dual specificity testis-specific protein kinase 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.12.1"; KO "K08842"; similar_genes "TESK2_HUMAN(e-value:1.6e-32;bit-score:137.0)"; Scaffold003 rebuild exon 4942719 4943201 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; Scaffold003 rebuild exon 4943446 4944226 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; Scaffold003 rebuild exon 4944304 4944536 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; Scaffold003 rebuild exon 4944744 4944792 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; Scaffold003 rebuild exon 4945180 4945301 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; Scaffold003 rebuild exon 4949582 4949758 . - . gene_id "RvY_08211"; transcript_id "RvY_08211.1"; Scaffold003 rebuild transcript 4953734 4958847 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; gene_name "RHOBTB2"; annotation "putative Rho-related BTB domain-containing protein 1"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[BTB] BTB/POZ domain"; CDD "RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature."; KO "K07868"; similar_genes "RHBT1_HUMAN(e-value:1.1e-33;bit-score:141.0)"; Scaffold003 rebuild exon 4953734 4953962 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4954028 4954176 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4954548 4954915 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4955177 4955665 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4956815 4957090 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4957247 4957344 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4957741 4957929 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4958092 4958195 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4958402 4958545 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild exon 4958797 4958847 . - . gene_id "RvY_08212"; transcript_id "RvY_08212.1"; Scaffold003 rebuild transcript 4959126 4959377 . + . gene_id "RvY_08213"; transcript_id "RvY_08213.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4959126 4959377 . + . gene_id "RvY_08213"; transcript_id "RvY_08213.1"; Scaffold003 rebuild transcript 4959951 4961546 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.1"; gene_name "(1)SUOX(2)eukary_SO_Moco"; annotation "(1)sulfite oxidase [EC:1.8.3.1](2)hypothetical protein."; Pfam "[Mo-co_dimer] Mo-co oxidoreductase dimerisation domain|[Oxidored_molyb] Oxidoreductase molybdopterin binding domain"; CDD "molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate."; EC "EC1.8.3.1"; KO "(1)K00387"; similar_genes "SUOX_CHICK(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 4959951 4960253 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.1"; Scaffold003 rebuild exon 4960315 4960628 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.1"; Scaffold003 rebuild exon 4960811 4961093 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.1"; Scaffold003 rebuild exon 4961292 4961546 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.1"; Scaffold003 rebuild transcript 4959951 4961291 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.2"; gene_name "(1)SUOX(2)eukary_SO_Moco"; annotation "(1)sulfite oxidase [EC:1.8.3.1](2)hypothetical protein."; Pfam "[Mo-co_dimer] Mo-co oxidoreductase dimerisation domain|[Oxidored_molyb] Oxidoreductase molybdopterin binding domain"; CDD "molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate."; EC "EC1.8.3.1"; KO "(1)K00387"; similar_genes "SUOX_CHICK(e-value:5.0e-23;bit-score:106.0)"; Scaffold003 rebuild exon 4959951 4960253 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.2"; Scaffold003 rebuild exon 4960315 4960628 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.2"; Scaffold003 rebuild exon 4960811 4961291 . + . gene_id "RvY_08214"; transcript_id "RvY_08214.2"; Scaffold003 rebuild transcript 4962232 4962492 . - . gene_id "RvY_08215"; transcript_id "RvY_08215.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4962232 4962492 . - . gene_id "RvY_08215"; transcript_id "RvY_08215.1"; Scaffold003 rebuild transcript 4962511 4962839 . - . gene_id "RvY_08216"; transcript_id "RvY_08216.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4962511 4962564 . - . gene_id "RvY_08216"; transcript_id "RvY_08216.1"; Scaffold003 rebuild exon 4962756 4962839 . - . gene_id "RvY_08216"; transcript_id "RvY_08216.1"; Scaffold003 rebuild transcript 4963490 4964299 . + . gene_id "RvY_08217"; transcript_id "RvY_08217.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold003 rebuild exon 4963490 4963762 . + . gene_id "RvY_08217"; transcript_id "RvY_08217.1"; Scaffold003 rebuild exon 4964114 4964299 . + . gene_id "RvY_08217"; transcript_id "RvY_08217.1"; Scaffold003 rebuild transcript 4964303 4964611 . + . gene_id "RvY_08218"; transcript_id "RvY_08218.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4964303 4964611 . + . gene_id "RvY_08218"; transcript_id "RvY_08218.1"; Scaffold003 rebuild transcript 4964853 4966125 . + . gene_id "RvY_08219"; transcript_id "RvY_08219.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4964853 4965156 . + . gene_id "RvY_08219"; transcript_id "RvY_08219.1"; Scaffold003 rebuild exon 4965234 4965322 . + . gene_id "RvY_08219"; transcript_id "RvY_08219.1"; Scaffold003 rebuild exon 4965418 4966125 . + . gene_id "RvY_08219"; transcript_id "RvY_08219.1"; Scaffold003 rebuild transcript 4969748 4975543 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; gene_name "CYCc"; annotation "Atrial natriuretic peptide receptor 2"; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_ANGJA(e-value:9.5e-52;bit-score:201.0)"; Scaffold003 rebuild exon 4969748 4970006 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4970067 4970110 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4970171 4970209 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4970610 4970687 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4970773 4970910 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4970979 4971029 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4971290 4971469 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4971551 4971689 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4971759 4971869 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4972327 4972430 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4972496 4972702 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4972945 4973124 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4973390 4973717 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4974118 4974433 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4974497 4974716 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4974797 4974958 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4975020 4975054 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4975142 4975191 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4975259 4975350 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild exon 4975457 4975543 . + . gene_id "RvY_08220"; transcript_id "RvY_08220.1"; Scaffold003 rebuild transcript 4976193 4976381 . + . gene_id "RvY_08221"; transcript_id "RvY_08221.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4976193 4976381 . + . gene_id "RvY_08221"; transcript_id "RvY_08221.1"; Scaffold003 rebuild transcript 4976928 4978025 . + . gene_id "RvY_08222"; transcript_id "RvY_08222.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4976928 4976972 . + . gene_id "RvY_08222"; transcript_id "RvY_08222.1"; Scaffold003 rebuild exon 4977050 4977305 . + . gene_id "RvY_08222"; transcript_id "RvY_08222.1"; Scaffold003 rebuild exon 4977579 4977892 . + . gene_id "RvY_08222"; transcript_id "RvY_08222.1"; Scaffold003 rebuild exon 4977987 4978025 . + . gene_id "RvY_08222"; transcript_id "RvY_08222.1"; Scaffold003 rebuild transcript 4978094 4978909 . - . gene_id "RvY_08223"; transcript_id "RvY_08223.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4978094 4978190 . - . gene_id "RvY_08223"; transcript_id "RvY_08223.1"; Scaffold003 rebuild exon 4978572 4978909 . - . gene_id "RvY_08223"; transcript_id "RvY_08223.1"; Scaffold003 rebuild transcript 4978773 4979033 . + . gene_id "RvY_08224"; transcript_id "RvY_08224.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4978773 4979033 . + . gene_id "RvY_08224"; transcript_id "RvY_08224.1"; Scaffold003 rebuild transcript 4981915 4982472 . + . gene_id "RvY_08225"; transcript_id "RvY_08225.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4981915 4982472 . + . gene_id "RvY_08225"; transcript_id "RvY_08225.1"; Scaffold003 rebuild transcript 4983666 4985367 . - . gene_id "RvY_08226"; transcript_id "RvY_08226.1"; gene_name "PCYT1"; annotation "Probable choline-phosphate cytidylyltransferase"; Pfam "[CTP_transf_2] Cytidylyltransferase"; CDD "CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures . A current model posits that bilayer curvature elastic stress is sensed by CCT and governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity."; EC "EC2.7.7.15"; KO "K00968"; similar_genes "PCY1_SCHPO(e-value:7.8e-62;bit-score:234.0)"; Scaffold003 rebuild exon 4983666 4984124 . - . gene_id "RvY_08226"; transcript_id "RvY_08226.1"; Scaffold003 rebuild exon 4984311 4984657 . - . gene_id "RvY_08226"; transcript_id "RvY_08226.1"; Scaffold003 rebuild exon 4984929 4985367 . - . gene_id "RvY_08226"; transcript_id "RvY_08226.1"; Scaffold003 rebuild transcript 4986124 4986621 . + . gene_id "RvY_08227"; transcript_id "RvY_08227.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4986124 4986621 . + . gene_id "RvY_08227"; transcript_id "RvY_08227.1"; Scaffold003 rebuild transcript 4986449 4986817 . + . gene_id "RvY_08227"; transcript_id "RvY_08227.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4986449 4986817 . + . gene_id "RvY_08227"; transcript_id "RvY_08227.2"; Scaffold003 rebuild transcript 4987062 4991452 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; gene_name "CAPNN"; annotation "Calpain-B"; Pfam "[efhand] EF hand|[Peptidase_C2] Calpain family cysteine protease|[Calpain_III] Calpain large subunit, domain III"; CDD "Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit)."; EC "EC3.4.22.-"; KO "K08585"; similar_genes "CANB_DROME(e-value:6.6e-57;bit-score:218.0)"; Scaffold003 rebuild exon 4987062 4987147 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4987222 4987338 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4987570 4987776 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4987974 4988106 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4988179 4988224 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4988282 4988499 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4988802 4988959 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4989030 4989211 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4989272 4989349 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4989423 4989520 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4989593 4989673 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4989764 4989852 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4989949 4990028 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4990129 4990242 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4990307 4990530 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4990611 4990784 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild exon 4991027 4991452 . - . gene_id "RvY_08228"; transcript_id "RvY_08228.1"; Scaffold003 rebuild transcript 4992628 4993467 . - . gene_id "RvY_08229"; transcript_id "RvY_08229.1"; gene_name "MP1"; annotation "mitogen-activated protein kinase kinase 1 interacting protein 1"; Pfam "[MAPKK1_Int] Mitogen-activated protein kinase kinase 1 interacting"; KO "K04370"; similar_genes "MPKSB_XENLA(e-value:2.0e-07;bit-score:54.0)"; Scaffold003 rebuild exon 4992628 4992695 . - . gene_id "RvY_08229"; transcript_id "RvY_08229.1"; Scaffold003 rebuild exon 4992761 4992824 . - . gene_id "RvY_08229"; transcript_id "RvY_08229.1"; Scaffold003 rebuild exon 4993083 4993275 . - . gene_id "RvY_08229"; transcript_id "RvY_08229.1"; Scaffold003 rebuild exon 4993334 4993368 . - . gene_id "RvY_08229"; transcript_id "RvY_08229.1"; Scaffold003 rebuild exon 4993459 4993467 . - . gene_id "RvY_08229"; transcript_id "RvY_08229.1"; Scaffold003 rebuild transcript 4994463 4997409 . + . gene_id "RvY_08230"; transcript_id "RvY_08230.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4994463 4994873 . + . gene_id "RvY_08230"; transcript_id "RvY_08230.1"; Scaffold003 rebuild exon 4995186 4995561 . + . gene_id "RvY_08230"; transcript_id "RvY_08230.1"; Scaffold003 rebuild exon 4995817 4996288 . + . gene_id "RvY_08230"; transcript_id "RvY_08230.1"; Scaffold003 rebuild exon 4996495 4996837 . + . gene_id "RvY_08230"; transcript_id "RvY_08230.1"; Scaffold003 rebuild exon 4997077 4997409 . + . gene_id "RvY_08230"; transcript_id "RvY_08230.1"; Scaffold003 rebuild transcript 4997457 4998938 . - . gene_id "RvY_08231"; transcript_id "RvY_08231.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 4997457 4997656 . - . gene_id "RvY_08231"; transcript_id "RvY_08231.1"; Scaffold003 rebuild exon 4998881 4998938 . - . gene_id "RvY_08231"; transcript_id "RvY_08231.1"; Scaffold003 rebuild transcript 4999409 5000879 . + . gene_id "RvY_08232"; transcript_id "RvY_08232.1"; annotation "hypothetical protein."; Pfam "[Argos] Antagonist of EGFR signalling, Argos"; Scaffold003 rebuild exon 4999409 4999801 . + . gene_id "RvY_08232"; transcript_id "RvY_08232.1"; Scaffold003 rebuild exon 5000398 5000613 . + . gene_id "RvY_08232"; transcript_id "RvY_08232.1"; Scaffold003 rebuild exon 5000697 5000879 . + . gene_id "RvY_08232"; transcript_id "RvY_08232.1"; Scaffold003 rebuild transcript 4999409 4999831 . + . gene_id "RvY_08232"; transcript_id "RvY_08232.2"; annotation "hypothetical protein."; Pfam "[Argos] Antagonist of EGFR signalling, Argos"; Scaffold003 rebuild exon 4999409 4999831 . + . gene_id "RvY_08232"; transcript_id "RvY_08232.2"; Scaffold003 rebuild transcript 5001612 5006837 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; gene_name "hutH"; annotation "Histidine ammonia-lyase"; Pfam "[Lyase_aromatic] Aromatic amino acid lyase"; CDD "histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase."; EC "EC4.3.1.3"; KO "K01745"; similar_genes "HUTH_HUMAN(e-value:7.6e-198;bit-score:686.0)"; Scaffold003 rebuild exon 5001612 5001770 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5002359 5002428 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5002548 5002656 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5002764 5002898 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5003179 5003265 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5003327 5003471 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5004542 5004622 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5004711 5004865 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5004931 5005026 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5005101 5005200 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5005467 5005606 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5005678 5005841 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5005918 5005984 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5006053 5006200 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5006328 5006434 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild exon 5006609 5006837 . - . gene_id "RvY_08233"; transcript_id "RvY_08233.1"; Scaffold003 rebuild transcript 5003885 5004251 . + . gene_id "RvY_08234"; transcript_id "RvY_08234.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5003885 5004004 . + . gene_id "RvY_08234"; transcript_id "RvY_08234.1"; Scaffold003 rebuild exon 5004078 5004251 . + . gene_id "RvY_08234"; transcript_id "RvY_08234.1"; Scaffold003 rebuild transcript 5008540 5011017 . - . gene_id "RvY_08235"; transcript_id "RvY_08235.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5008540 5008714 . - . gene_id "RvY_08235"; transcript_id "RvY_08235.1"; Scaffold003 rebuild exon 5009064 5009425 . - . gene_id "RvY_08235"; transcript_id "RvY_08235.1"; Scaffold003 rebuild exon 5009926 5010548 . - . gene_id "RvY_08235"; transcript_id "RvY_08235.1"; Scaffold003 rebuild exon 5010915 5011017 . - . gene_id "RvY_08235"; transcript_id "RvY_08235.1"; Scaffold003 rebuild transcript 5012938 5016427 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; gene_name "SRPR"; annotation "Signal recognition particle receptor subunit alpha homolog"; Pfam "[SRP-alpha_N] Signal recognition particle, alpha subunit, N-terminal|[SRP54] SRP54-type protein, GTPase domain|[CbiA] CobQ/CobB/MinD/ParA nucleotide binding domain"; CDD "Signal recognition particle GTPase [Intracellular trafficking and secretion]"; KO "K13431"; similar_genes "SRPR_DROME(e-value:3.6e-66;bit-score:249.0)"; Scaffold003 rebuild exon 5012938 5013063 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5013311 5013487 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5013650 5013735 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5014084 5014294 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5014361 5014533 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5014601 5014943 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5015189 5015330 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5015421 5015520 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5015626 5015977 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5016046 5016129 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild exon 5016311 5016427 . - . gene_id "RvY_08236"; transcript_id "RvY_08236.1"; Scaffold003 rebuild transcript 5017886 5018350 . + . gene_id "RvY_08237"; transcript_id "RvY_08237.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5017886 5018350 . + . gene_id "RvY_08237"; transcript_id "RvY_08237.1"; Scaffold003 rebuild transcript 5017886 5018261 . + . gene_id "RvY_08237"; transcript_id "RvY_08237.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5017886 5018111 . + . gene_id "RvY_08237"; transcript_id "RvY_08237.2"; Scaffold003 rebuild exon 5018185 5018261 . + . gene_id "RvY_08237"; transcript_id "RvY_08237.2"; Scaffold003 rebuild transcript 5019161 5023225 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.1"; gene_name "(1)C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "(1)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold003 rebuild exon 5019161 5019207 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.1"; Scaffold003 rebuild exon 5019455 5019588 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.1"; Scaffold003 rebuild exon 5021855 5022155 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.1"; Scaffold003 rebuild exon 5022245 5022638 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.1"; Scaffold003 rebuild exon 5022920 5023225 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.1"; Scaffold003 rebuild transcript 5018438 5019204 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.2"; gene_name "(1)C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "(1)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold003 rebuild exon 5018438 5018684 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.2"; Scaffold003 rebuild exon 5018762 5018986 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.2"; Scaffold003 rebuild exon 5019065 5019204 . + . gene_id "RvY_08238"; transcript_id "RvY_08238.2"; Scaffold003 rebuild transcript 5020788 5021006 . - . gene_id "RvY_08239"; transcript_id "RvY_08239.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5020788 5021006 . - . gene_id "RvY_08239"; transcript_id "RvY_08239.1"; Scaffold003 rebuild transcript 5025164 5025846 . + . gene_id "RvY_08240"; transcript_id "RvY_08240.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5025164 5025281 . + . gene_id "RvY_08240"; transcript_id "RvY_08240.1"; Scaffold003 rebuild exon 5025353 5025846 . + . gene_id "RvY_08240"; transcript_id "RvY_08240.1"; Scaffold003 rebuild transcript 5026129 5026929 . + . gene_id "RvY_08241"; transcript_id "RvY_08241.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold003 rebuild exon 5026129 5026929 . + . gene_id "RvY_08241"; transcript_id "RvY_08241.1"; Scaffold003 rebuild transcript 5027000 5027776 . + . gene_id "RvY_08242"; transcript_id "RvY_08242.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5027000 5027776 . + . gene_id "RvY_08242"; transcript_id "RvY_08242.1"; Scaffold003 rebuild transcript 5026984 5027776 . + . gene_id "RvY_08242"; transcript_id "RvY_08242.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5026984 5027023 . + . gene_id "RvY_08242"; transcript_id "RvY_08242.2"; Scaffold003 rebuild exon 5027148 5027776 . + . gene_id "RvY_08242"; transcript_id "RvY_08242.2"; Scaffold003 rebuild transcript 5031168 5031844 . + . gene_id "RvY_08244"; transcript_id "RvY_08244.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5031168 5031513 . + . gene_id "RvY_08244"; transcript_id "RvY_08244.1"; Scaffold003 rebuild exon 5031522 5031844 . + . gene_id "RvY_08244"; transcript_id "RvY_08244.1"; Scaffold003 rebuild transcript 5032016 5032768 . + . gene_id "RvY_08245"; transcript_id "RvY_08245.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold003 rebuild exon 5032016 5032189 . + . gene_id "RvY_08245"; transcript_id "RvY_08245.1"; Scaffold003 rebuild exon 5032235 5032768 . + . gene_id "RvY_08245"; transcript_id "RvY_08245.1"; Scaffold003 rebuild transcript 5032793 5033558 . + . gene_id "RvY_08246"; transcript_id "RvY_08246.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5032793 5033027 . + . gene_id "RvY_08246"; transcript_id "RvY_08246.1"; Scaffold003 rebuild exon 5033077 5033558 . + . gene_id "RvY_08246"; transcript_id "RvY_08246.1"; Scaffold003 rebuild transcript 5037324 5039688 . + . gene_id "RvY_08247"; transcript_id "RvY_08247.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; Pfam "[Phage_integrase] Phage integrase family"; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold003 rebuild exon 5037324 5037963 . + . gene_id "RvY_08247"; transcript_id "RvY_08247.1"; Scaffold003 rebuild exon 5038707 5039177 . + . gene_id "RvY_08247"; transcript_id "RvY_08247.1"; Scaffold003 rebuild exon 5039228 5039688 . + . gene_id "RvY_08247"; transcript_id "RvY_08247.1"; Scaffold003 rebuild transcript 5039718 5040360 . + . gene_id "RvY_08248"; transcript_id "RvY_08248.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5039718 5040105 . + . gene_id "RvY_08248"; transcript_id "RvY_08248.1"; Scaffold003 rebuild exon 5040194 5040360 . + . gene_id "RvY_08248"; transcript_id "RvY_08248.1"; Scaffold003 rebuild transcript 5040621 5043009 . + . gene_id "RvY_08249"; transcript_id "RvY_08249.1"; gene_name "retropepsin_like"; annotation "hypothetical protein."; CDD "Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The Scaffold003 rebuild exon 5040621 5042070 . + . gene_id "RvY_08249"; transcript_id "RvY_08249.1"; Scaffold003 rebuild exon 5042223 5042328 . + . gene_id "RvY_08249"; transcript_id "RvY_08249.1"; Scaffold003 rebuild exon 5042385 5043009 . + . gene_id "RvY_08249"; transcript_id "RvY_08249.1"; Scaffold003 rebuild transcript 5045325 5048302 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_3] alpha/beta hydrolase fold|[COesterase] Carboxylesterase family"; EC "EC3.1.1.3"; similar_genes "CEL_BOVIN(e-value:1.2e-15;bit-score:81.0)"; Scaffold003 rebuild exon 5045325 5045543 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5045819 5046053 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5046136 5046225 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5046289 5046474 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5046560 5046774 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5046987 5047128 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5047194 5047390 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5047462 5047588 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5047675 5047801 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild exon 5048158 5048302 . + . gene_id "RvY_08250"; transcript_id "RvY_08250.1"; Scaffold003 rebuild transcript 5048944 5050678 . + . gene_id "RvY_08251"; transcript_id "RvY_08251.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; Scaffold003 rebuild exon 5048944 5049077 . + . gene_id "RvY_08251"; transcript_id "RvY_08251.1"; Scaffold003 rebuild exon 5049147 5049371 . + . gene_id "RvY_08251"; transcript_id "RvY_08251.1"; Scaffold003 rebuild exon 5049632 5049888 . + . gene_id "RvY_08251"; transcript_id "RvY_08251.1"; Scaffold003 rebuild exon 5049951 5050678 . + . gene_id "RvY_08251"; transcript_id "RvY_08251.1"; Scaffold003 rebuild transcript 5051106 5060353 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; gene_name "FANCM"; annotation "putative Fanconi anemia group M protein"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[ResIII] Type III restriction enzyme, res subunit"; CDD "ERCC4-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10896"; similar_genes "FANCM_HUMAN(e-value:4.3e-37;bit-score:152.0)"; Scaffold003 rebuild exon 5051106 5051196 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5051259 5051454 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5051751 5051955 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5052036 5052238 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5052396 5053836 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5054778 5055131 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5055431 5055591 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5055666 5055891 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5055960 5056166 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5056345 5056724 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5057033 5057246 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5057331 5057484 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5057545 5057678 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5057783 5057896 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5058000 5058136 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5058300 5058614 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5058856 5059397 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild exon 5059704 5060353 . - . gene_id "RvY_08252"; transcript_id "RvY_08252.1"; Scaffold003 rebuild transcript 5061082 5065988 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold003 rebuild exon 5061082 5061344 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5061554 5061708 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5061809 5062064 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5062361 5062628 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5062771 5062815 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5063027 5063545 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5063613 5063654 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5063962 5064139 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5064230 5064658 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5064932 5065041 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild exon 5065146 5065988 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.1"; Scaffold003 rebuild transcript 5061082 5065988 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold003 rebuild exon 5061082 5061344 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5061554 5061708 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5061809 5062064 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5062361 5062628 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5063027 5063545 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5063613 5063654 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5063962 5064139 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5064230 5064658 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5064932 5065041 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild exon 5065146 5065988 . + . gene_id "RvY_08253"; transcript_id "RvY_08253.2"; Scaffold003 rebuild transcript 5066359 5066894 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5066359 5066441 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.1"; Scaffold003 rebuild exon 5066675 5066894 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.1"; Scaffold003 rebuild transcript 5066359 5066974 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5066359 5066441 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.2"; Scaffold003 rebuild exon 5066675 5066773 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.2"; Scaffold003 rebuild exon 5066950 5066974 . - . gene_id "RvY_08254"; transcript_id "RvY_08254.2"; Scaffold003 rebuild transcript 5070688 5071508 . - . gene_id "RvY_08255"; transcript_id "RvY_08255.1"; gene_name "UBE2H"; annotation "Ubiquitin-conjugating enzyme E2 H"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K10576"; similar_genes "UBE2H_HUMAN(e-value:9.7e-73;bit-score:271.0)"; Scaffold003 rebuild exon 5070688 5070766 . - . gene_id "RvY_08255"; transcript_id "RvY_08255.1"; Scaffold003 rebuild exon 5071015 5071508 . - . gene_id "RvY_08255"; transcript_id "RvY_08255.1"; Scaffold003 rebuild transcript 5070688 5071508 . - . gene_id "RvY_08255"; transcript_id "RvY_08255.2"; gene_name "UBE2H"; annotation "Ubiquitin-conjugating enzyme E2 H"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K10576"; similar_genes "UBE2H_HUMAN(e-value:9.7e-73;bit-score:271.0)"; Scaffold003 rebuild exon 5070688 5070763 . - . gene_id "RvY_08255"; transcript_id "RvY_08255.2"; Scaffold003 rebuild exon 5071015 5071508 . - . gene_id "RvY_08255"; transcript_id "RvY_08255.2"; Scaffold003 rebuild transcript 5073604 5078046 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; annotation "hypothetical protein."; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_G_1] Laminin G domain"; similar_genes "NRX4_DROME(e-value:4.2e-16;bit-score:83.0)"; Scaffold003 rebuild exon 5073604 5073747 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5073813 5073898 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5073962 5074234 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5074328 5074424 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5074792 5075729 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5075801 5075979 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5076184 5076307 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5076380 5076583 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5076889 5076997 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5077062 5077333 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5077533 5077673 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5077736 5077814 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild exon 5077963 5078046 . - . gene_id "RvY_08256"; transcript_id "RvY_08256.1"; Scaffold003 rebuild transcript 5080609 5088693 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; gene_name "ESP1"; annotation "separase [EC:3.4.22.49]"; Pfam "[Peptidase_C50] Peptidase family C50"; EC "EC3.4.22.49"; KO "K02365"; Scaffold003 rebuild exon 5080609 5080849 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5081290 5081454 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5081517 5081603 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5081678 5081883 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5082122 5082307 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5082529 5082807 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5082864 5083125 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5083452 5083662 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5083809 5084148 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5084223 5084462 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5084820 5085196 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5085259 5085536 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5085903 5086059 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5086145 5086379 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5086622 5086876 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5086937 5087251 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5087511 5088128 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5088289 5088558 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild exon 5088616 5088693 . - . gene_id "RvY_08257"; transcript_id "RvY_08257.1"; Scaffold003 rebuild transcript 5090485 5091280 . - . gene_id "RvY_08258"; transcript_id "RvY_08258.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5090485 5090589 . - . gene_id "RvY_08258"; transcript_id "RvY_08258.1"; Scaffold003 rebuild exon 5091155 5091280 . - . gene_id "RvY_08258"; transcript_id "RvY_08258.1"; Scaffold003 rebuild transcript 5091925 5092746 . + . gene_id "RvY_08259"; transcript_id "RvY_08259.1"; annotation "hypothetical protein."; Pfam "[DFF40] DNA fragmentation factor 40 kDa"; Scaffold003 rebuild exon 5091925 5092045 . + . gene_id "RvY_08259"; transcript_id "RvY_08259.1"; Scaffold003 rebuild exon 5092123 5092205 . + . gene_id "RvY_08259"; transcript_id "RvY_08259.1"; Scaffold003 rebuild exon 5092300 5092746 . + . gene_id "RvY_08259"; transcript_id "RvY_08259.1"; Scaffold003 rebuild transcript 5094009 5094471 . - . gene_id "RvY_08261"; transcript_id "RvY_08261.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5094009 5094112 . - . gene_id "RvY_08261"; transcript_id "RvY_08261.1"; Scaffold003 rebuild exon 5094231 5094471 . - . gene_id "RvY_08261"; transcript_id "RvY_08261.1"; Scaffold003 rebuild transcript 5094936 5095666 . - . gene_id "RvY_08262"; transcript_id "RvY_08262.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5094936 5095278 . - . gene_id "RvY_08262"; transcript_id "RvY_08262.1"; Scaffold003 rebuild exon 5095563 5095666 . - . gene_id "RvY_08262"; transcript_id "RvY_08262.1"; Scaffold003 rebuild transcript 5095913 5099618 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; gene_name "PARP"; annotation "putative Poly [ADP-ribose] polymerase 2"; Pfam "[WGR]|[PARP_reg] Poly(ADP-ribose) polymerase, regulatory domain|[PARP] Poly(ADP-ribose) polymerase catalytic domain"; CDD "Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically Scaffold003 rebuild exon 5095913 5095969 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5096082 5096208 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5096483 5096702 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5096876 5097303 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5097482 5097659 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5097727 5098001 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5098261 5098576 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5098690 5098782 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5098846 5098974 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5099087 5099269 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild exon 5099354 5099618 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.1"; Scaffold003 rebuild transcript 5095913 5099576 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; gene_name "PARP"; annotation "putative Poly [ADP-ribose] polymerase 2"; Pfam "[WGR]|[PARP_reg] Poly(ADP-ribose) polymerase, regulatory domain|[PARP] Poly(ADP-ribose) polymerase catalytic domain"; CDD "Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically Scaffold003 rebuild exon 5095913 5095969 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5096082 5096208 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5096483 5096702 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5096876 5097303 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5097482 5097659 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5097727 5098001 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5098261 5098576 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5098690 5098782 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5098846 5098974 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5099087 5099269 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild exon 5099354 5099576 . - . gene_id "RvY_08263"; transcript_id "RvY_08263.2"; Scaffold003 rebuild transcript 5101628 5103100 . - . gene_id "RvY_08264"; transcript_id "RvY_08264.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5101628 5101768 . - . gene_id "RvY_08264"; transcript_id "RvY_08264.1"; Scaffold003 rebuild exon 5102891 5103100 . - . gene_id "RvY_08264"; transcript_id "RvY_08264.1"; Scaffold003 rebuild transcript 5104034 5104243 . - . gene_id "RvY_08265"; transcript_id "RvY_08265.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5104034 5104243 . - . gene_id "RvY_08265"; transcript_id "RvY_08265.1"; Scaffold003 rebuild transcript 5104469 5104765 . + . gene_id "RvY_08266"; transcript_id "RvY_08266.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5104469 5104765 . + . gene_id "RvY_08266"; transcript_id "RvY_08266.1"; Scaffold003 rebuild transcript 5105439 5107482 . + . gene_id "RvY_08267"; transcript_id "RvY_08267.1"; gene_name "INO80B"; annotation "INO80 complex subunit B"; Pfam "[zf-HIT] HIT zinc finger"; KO "K11666"; Scaffold003 rebuild exon 5105439 5105813 . + . gene_id "RvY_08267"; transcript_id "RvY_08267.1"; Scaffold003 rebuild exon 5106107 5106464 . + . gene_id "RvY_08267"; transcript_id "RvY_08267.1"; Scaffold003 rebuild exon 5106537 5106775 . + . gene_id "RvY_08267"; transcript_id "RvY_08267.1"; Scaffold003 rebuild exon 5106846 5106992 . + . gene_id "RvY_08267"; transcript_id "RvY_08267.1"; Scaffold003 rebuild exon 5107162 5107482 . + . gene_id "RvY_08267"; transcript_id "RvY_08267.1"; Scaffold003 rebuild transcript 5108161 5109928 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; gene_name "NOA36"; annotation "Zinc finger protein 330 homolog"; Pfam "[NOA36] NOA36 protein"; CDD "NOA36 protein. This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown."; similar_genes "ZN330_DROME(e-value:2.8e-87;bit-score:319.0)"; Scaffold003 rebuild exon 5108161 5108297 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5108436 5108506 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5108595 5108660 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5108749 5108931 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5109029 5109091 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5109176 5109222 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5109513 5109624 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild exon 5109690 5109928 . + . gene_id "RvY_08268"; transcript_id "RvY_08268.1"; Scaffold003 rebuild transcript 5110520 5111970 . + . gene_id "RvY_08269"; transcript_id "RvY_08269.1"; gene_name "DUF1208"; annotation "hypothetical protein."; Pfam "[FAM92] FAM92 protein"; CDD "Protein of unknown function (DUF1208). This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown."; Scaffold003 rebuild exon 5110520 5110609 . + . gene_id "RvY_08269"; transcript_id "RvY_08269.1"; Scaffold003 rebuild exon 5111002 5111970 . + . gene_id "RvY_08269"; transcript_id "RvY_08269.1"; Scaffold003 rebuild transcript 5120999 5125966 . - . gene_id "RvY_08270"; transcript_id "RvY_08270.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5120999 5121162 . - . gene_id "RvY_08270"; transcript_id "RvY_08270.1"; Scaffold003 rebuild exon 5125564 5125966 . - . gene_id "RvY_08270"; transcript_id "RvY_08270.1"; Scaffold003 rebuild transcript 5126868 5127875 . - . gene_id "RvY_08271"; transcript_id "RvY_08271.1"; gene_name "MDP-1"; annotation "hypothetical protein."; Pfam "[Acid_PPase] Acid Phosphatase|[HAD_2] Haloacid dehalogenase-like hydrolase"; CDD "magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the Scaffold003 rebuild exon 5126868 5127153 . - . gene_id "RvY_08271"; transcript_id "RvY_08271.1"; Scaffold003 rebuild exon 5127462 5127633 . - . gene_id "RvY_08271"; transcript_id "RvY_08271.1"; Scaffold003 rebuild exon 5127743 5127875 . - . gene_id "RvY_08271"; transcript_id "RvY_08271.1"; Scaffold003 rebuild transcript 5131928 5133164 . - . gene_id "RvY_08272"; transcript_id "RvY_08272.1"; annotation "hypothetical protein."; Pfam "[Utp12] Dip2/Utp12 Family"; KO "K14546"; Scaffold003 rebuild exon 5131928 5132116 . - . gene_id "RvY_08272"; transcript_id "RvY_08272.1"; Scaffold003 rebuild exon 5132439 5133164 . - . gene_id "RvY_08272"; transcript_id "RvY_08272.1"; Scaffold003 rebuild transcript 5133784 5142297 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; gene_name "LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; CDD "Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; similar_genes "LR16A_HUMAN(e-value:3.8e-23;bit-score:106.0)"; Scaffold003 rebuild exon 5133784 5133823 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5134154 5134251 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5134331 5134381 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5134562 5134621 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5134717 5134844 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5135274 5135510 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5135587 5135662 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5135973 5136061 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5136184 5136278 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5136971 5137158 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5137566 5137643 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5137724 5137914 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5138270 5138424 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5138507 5138606 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5138667 5138721 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5138796 5138899 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5138982 5139213 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5139268 5139504 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5139785 5139967 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5140042 5140142 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5140200 5140383 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5140448 5140876 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5141170 5141488 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5141551 5141793 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild exon 5142065 5142297 . + . gene_id "RvY_08273"; transcript_id "RvY_08273.1"; Scaffold003 rebuild transcript 5142893 5144602 . - . gene_id "RvY_08274"; transcript_id "RvY_08274.1"; gene_name "USP12_46"; annotation "Ubiquitin carboxyl-terminal hydrolase 46"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; EC "EC3.1.2.15"; KO "K11842"; similar_genes "UBP46_HUMAN(e-value:9.7e-73;bit-score:271.0)"; Scaffold003 rebuild exon 5142893 5143629 . - . gene_id "RvY_08274"; transcript_id "RvY_08274.1"; Scaffold003 rebuild exon 5144017 5144305 . - . gene_id "RvY_08274"; transcript_id "RvY_08274.1"; Scaffold003 rebuild exon 5144501 5144602 . - . gene_id "RvY_08274"; transcript_id "RvY_08274.1"; Scaffold003 rebuild transcript 5145635 5152749 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5145635 5145677 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5145748 5145893 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5145987 5146124 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5146403 5146652 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5146717 5146943 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5147002 5147163 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5147238 5147460 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5147773 5148120 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5148317 5148663 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5148897 5149745 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5150236 5150551 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5150836 5151241 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5151541 5151871 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5152040 5152297 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5152491 5152637 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild exon 5152705 5152749 . + . gene_id "RvY_08275"; transcript_id "RvY_08275.1"; Scaffold003 rebuild transcript 5154530 5155704 . - . gene_id "RvY_08276"; transcript_id "RvY_08276.1"; annotation "hypothetical protein."; Pfam "[DFF40] DNA fragmentation factor 40 kDa"; Scaffold003 rebuild exon 5154530 5154976 . - . gene_id "RvY_08276"; transcript_id "RvY_08276.1"; Scaffold003 rebuild exon 5155621 5155704 . - . gene_id "RvY_08276"; transcript_id "RvY_08276.1"; Scaffold003 rebuild transcript 5156629 5157255 . + . gene_id "RvY_08277"; transcript_id "RvY_08277.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5156629 5156836 . + . gene_id "RvY_08277"; transcript_id "RvY_08277.1"; Scaffold003 rebuild exon 5157071 5157255 . + . gene_id "RvY_08277"; transcript_id "RvY_08277.1"; Scaffold003 rebuild transcript 5157025 5157601 . - . gene_id "RvY_08278"; transcript_id "RvY_08278.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5157025 5157191 . - . gene_id "RvY_08278"; transcript_id "RvY_08278.1"; Scaffold003 rebuild exon 5157236 5157492 . - . gene_id "RvY_08278"; transcript_id "RvY_08278.1"; Scaffold003 rebuild exon 5157546 5157601 . - . gene_id "RvY_08278"; transcript_id "RvY_08278.1"; Scaffold003 rebuild transcript 5157105 5157527 . - . gene_id "RvY_08278"; transcript_id "RvY_08278.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5157105 5157527 . - . gene_id "RvY_08278"; transcript_id "RvY_08278.2"; Scaffold003 rebuild transcript 5159695 5163704 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.-"; similar_genes "NEPL1_CAEEL(e-value:1.0e-12;bit-score:71.0)"; Scaffold003 rebuild exon 5159695 5159917 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5160000 5160158 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5160225 5160320 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5160792 5161195 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5161621 5162118 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5162198 5162377 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5162595 5162763 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5162825 5162944 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild exon 5163268 5163704 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.1"; Scaffold003 rebuild transcript 5161516 5163819 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; gene_name "PepO"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.24.-"; similar_genes "NEPL1_CAEEL(e-value:1.0e-12;bit-score:71.0)"; Scaffold003 rebuild exon 5161516 5162118 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; Scaffold003 rebuild exon 5162198 5162377 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; Scaffold003 rebuild exon 5162595 5162763 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; Scaffold003 rebuild exon 5162825 5162944 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; Scaffold003 rebuild exon 5163268 5163461 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; Scaffold003 rebuild exon 5163535 5163819 . + . gene_id "RvY_08279"; transcript_id "RvY_08279.2"; Scaffold003 rebuild transcript 5178525 5178926 . - . gene_id "RvY_08280"; transcript_id "RvY_08280.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5178525 5178926 . - . gene_id "RvY_08280"; transcript_id "RvY_08280.1"; Scaffold003 rebuild transcript 5182430 5182831 . + . gene_id "RvY_08281"; transcript_id "RvY_08281.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5182430 5182596 . + . gene_id "RvY_08281"; transcript_id "RvY_08281.1"; Scaffold003 rebuild exon 5182606 5182831 . + . gene_id "RvY_08281"; transcript_id "RvY_08281.1"; Scaffold003 rebuild transcript 5184132 5192128 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold003 rebuild exon 5184132 5184216 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5184287 5184380 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5184630 5184762 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5184831 5185013 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5185141 5185188 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5186772 5186924 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5187275 5187352 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5187679 5187717 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5187788 5187831 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5188125 5188432 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5191581 5191638 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild exon 5191705 5192128 . - . gene_id "RvY_08282"; transcript_id "RvY_08282.1"; Scaffold003 rebuild transcript 5196679 5196891 . - . gene_id "RvY_08283"; transcript_id "RvY_08283.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5196679 5196891 . - . gene_id "RvY_08283"; transcript_id "RvY_08283.1"; Scaffold003 rebuild transcript 5198680 5199947 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; gene_name "fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "EC1.1.1.184"; similar_genes "CBR2_MOUSE(e-value:2.9e-06;bit-score:50.0)"; Scaffold003 rebuild exon 5198680 5198786 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild exon 5198868 5198985 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild exon 5199073 5199237 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild exon 5199321 5199363 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild exon 5199432 5199589 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild exon 5199666 5199775 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild exon 5199839 5199947 . - . gene_id "RvY_08284"; transcript_id "RvY_08284.1"; Scaffold003 rebuild transcript 5200267 5200980 . - . gene_id "RvY_08285"; transcript_id "RvY_08285.1"; gene_name "fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Provisional"; Scaffold003 rebuild exon 5200267 5200373 . - . gene_id "RvY_08285"; transcript_id "RvY_08285.1"; Scaffold003 rebuild exon 5200459 5200576 . - . gene_id "RvY_08285"; transcript_id "RvY_08285.1"; Scaffold003 rebuild exon 5200649 5200813 . - . gene_id "RvY_08285"; transcript_id "RvY_08285.1"; Scaffold003 rebuild exon 5200876 5200980 . - . gene_id "RvY_08285"; transcript_id "RvY_08285.1"; Scaffold003 rebuild transcript 5201171 5201633 . - . gene_id "RvY_08286"; transcript_id "RvY_08286.1"; gene_name "(1)PRK12826"; annotation "hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed"; Scaffold003 rebuild exon 5201171 5201278 . - . gene_id "RvY_08286"; transcript_id "RvY_08286.1"; Scaffold003 rebuild exon 5201369 5201478 . - . gene_id "RvY_08286"; transcript_id "RvY_08286.1"; Scaffold003 rebuild exon 5201546 5201633 . - . gene_id "RvY_08286"; transcript_id "RvY_08286.1"; Scaffold003 rebuild transcript 5201415 5201657 . - . gene_id "RvY_08286"; transcript_id "RvY_08286.2"; gene_name "(1)PRK12826"; annotation "hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase"; CDD "(1)3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed"; Scaffold003 rebuild exon 5201415 5201657 . - . gene_id "RvY_08286"; transcript_id "RvY_08286.2"; Scaffold003 rebuild transcript 5203341 5204198 . + . gene_id "RvY_08287"; transcript_id "RvY_08287.1"; gene_name "(1)gst"; annotation "(1)glutathione S-transferase [EC:2.5.1.18](2)hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "(1)GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold003 rebuild exon 5203341 5203595 . + . gene_id "RvY_08287"; transcript_id "RvY_08287.1"; Scaffold003 rebuild exon 5203721 5203769 . + . gene_id "RvY_08287"; transcript_id "RvY_08287.1"; Scaffold003 rebuild exon 5203858 5204198 . + . gene_id "RvY_08287"; transcript_id "RvY_08287.1"; Scaffold003 rebuild transcript 5204165 5204491 . + . gene_id "RvY_08287"; transcript_id "RvY_08287.2"; gene_name "(1)gst"; annotation "(1)glutathione S-transferase [EC:2.5.1.18](2)hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "(1)GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold003 rebuild exon 5204165 5204491 . + . gene_id "RvY_08287"; transcript_id "RvY_08287.2"; Scaffold003 rebuild transcript 5204893 5205219 . - . gene_id "RvY_08288"; transcript_id "RvY_08288.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5204893 5205219 . - . gene_id "RvY_08288"; transcript_id "RvY_08288.1"; Scaffold003 rebuild transcript 5204920 5205805 . + . gene_id "RvY_08289"; transcript_id "RvY_08289.1"; gene_name "GST_N_Sigma_like"; annotation "hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold003 rebuild exon 5204920 5205264 . + . gene_id "RvY_08289"; transcript_id "RvY_08289.1"; Scaffold003 rebuild exon 5205332 5205380 . + . gene_id "RvY_08289"; transcript_id "RvY_08289.1"; Scaffold003 rebuild exon 5205471 5205805 . + . gene_id "RvY_08289"; transcript_id "RvY_08289.1"; Scaffold003 rebuild transcript 5207131 5208927 . - . gene_id "RvY_08290"; transcript_id "RvY_08290.1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[HEAT] HEAT repeat"; Scaffold003 rebuild exon 5207131 5207391 . - . gene_id "RvY_08290"; transcript_id "RvY_08290.1"; Scaffold003 rebuild exon 5208266 5208355 . - . gene_id "RvY_08290"; transcript_id "RvY_08290.1"; Scaffold003 rebuild exon 5208480 5208569 . - . gene_id "RvY_08290"; transcript_id "RvY_08290.1"; Scaffold003 rebuild exon 5208763 5208927 . - . gene_id "RvY_08290"; transcript_id "RvY_08290.1"; Scaffold003 rebuild transcript 5209215 5211921 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5209215 5209316 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5209384 5209635 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5209700 5209792 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5210027 5210173 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5210340 5210429 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5210660 5210873 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5210900 5211019 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5211082 5211308 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild exon 5211568 5211921 . + . gene_id "RvY_08291"; transcript_id "RvY_08291.1"; Scaffold003 rebuild transcript 5213872 5214702 . - . gene_id "RvY_08292"; transcript_id "RvY_08292.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5213872 5214368 . - . gene_id "RvY_08292"; transcript_id "RvY_08292.1"; Scaffold003 rebuild exon 5214501 5214702 . - . gene_id "RvY_08292"; transcript_id "RvY_08292.1"; Scaffold003 rebuild transcript 5214909 5217837 . - . gene_id "RvY_08293"; transcript_id "RvY_08293.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold003 rebuild exon 5214909 5215337 . - . gene_id "RvY_08293"; transcript_id "RvY_08293.1"; Scaffold003 rebuild exon 5215555 5215848 . - . gene_id "RvY_08293"; transcript_id "RvY_08293.1"; Scaffold003 rebuild exon 5216205 5216709 . - . gene_id "RvY_08293"; transcript_id "RvY_08293.1"; Scaffold003 rebuild exon 5217115 5217404 . - . gene_id "RvY_08293"; transcript_id "RvY_08293.1"; Scaffold003 rebuild exon 5217766 5217837 . - . gene_id "RvY_08293"; transcript_id "RvY_08293.1"; Scaffold003 rebuild transcript 5216253 5216735 . + . gene_id "RvY_08294"; transcript_id "RvY_08294.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5216253 5216735 . + . gene_id "RvY_08294"; transcript_id "RvY_08294.1"; Scaffold003 rebuild transcript 5221250 5226504 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; gene_name "WD40"; annotation "hypothetical protein."; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold003 rebuild exon 5221250 5221350 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5221712 5221860 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5221933 5222045 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5222104 5222241 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5222525 5222662 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5222726 5222855 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5222912 5223019 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5223378 5223478 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5223557 5223960 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5224251 5224383 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5224472 5224741 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5224803 5224991 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5226100 5226315 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild exon 5226388 5226504 . - . gene_id "RvY_08295"; transcript_id "RvY_08295.1"; Scaffold003 rebuild transcript 5227292 5228287 . + . gene_id "RvY_08296"; transcript_id "RvY_08296.1"; annotation "U3 small nucleolar ribonucleoprotein protein IMP4"; Pfam "[Brix]"; KO "K14561"; similar_genes "IMP4_RAT(e-value:8.9e-97;bit-score:351.0)"; Scaffold003 rebuild exon 5227292 5227916 . + . gene_id "RvY_08296"; transcript_id "RvY_08296.1"; Scaffold003 rebuild exon 5228013 5228287 . + . gene_id "RvY_08296"; transcript_id "RvY_08296.1"; Scaffold003 rebuild transcript 5228413 5229219 . - . gene_id "RvY_08297"; transcript_id "RvY_08297.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5228413 5228472 . - . gene_id "RvY_08297"; transcript_id "RvY_08297.1"; Scaffold003 rebuild exon 5228665 5229219 . - . gene_id "RvY_08297"; transcript_id "RvY_08297.1"; Scaffold003 rebuild transcript 5229252 5230351 . - . gene_id "RvY_08298"; transcript_id "RvY_08298.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5229252 5229315 . - . gene_id "RvY_08298"; transcript_id "RvY_08298.1"; Scaffold003 rebuild exon 5229481 5229635 . - . gene_id "RvY_08298"; transcript_id "RvY_08298.1"; Scaffold003 rebuild exon 5230035 5230119 . - . gene_id "RvY_08298"; transcript_id "RvY_08298.1"; Scaffold003 rebuild exon 5230305 5230351 . - . gene_id "RvY_08298"; transcript_id "RvY_08298.1"; Scaffold003 rebuild transcript 5230351 5232471 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; gene_name "COQ2"; annotation "Para-hydroxybenzoate--polyprenyltransferase, mitochondrial"; Pfam "[UbiA] UbiA prenyltransferase family"; CDD "4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members."; EC "EC2.5.1.-"; KO "K06125"; similar_genes "COQ2_DROPS(e-value:5.8e-58;bit-score:222.0)"; Scaffold003 rebuild exon 5230351 5230719 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild exon 5230786 5230919 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild exon 5231229 5231314 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild exon 5231450 5231571 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild exon 5231649 5231815 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild exon 5232092 5232241 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild exon 5232306 5232471 . - . gene_id "RvY_08299"; transcript_id "RvY_08299.1"; Scaffold003 rebuild transcript 5232924 5233559 . + . gene_id "RvY_08300"; transcript_id "RvY_08300.1"; annotation "hypothetical protein."; Pfam "[JTB] Jumping translocation breakpoint protein (JTB)"; Scaffold003 rebuild exon 5232924 5233559 . + . gene_id "RvY_08300"; transcript_id "RvY_08300.1"; Scaffold003 rebuild transcript 5233753 5234975 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; annotation "putative Transcription elongation factor SPT4 1"; Pfam "[Spt4] Spt4/RpoE2 zinc finger"; KO "K15171"; similar_genes "SPT41_MOUSE(e-value:5.7e-39;bit-score:159.0)"; Scaffold003 rebuild exon 5233753 5233806 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; Scaffold003 rebuild exon 5233967 5234040 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; Scaffold003 rebuild exon 5234378 5234433 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; Scaffold003 rebuild exon 5234493 5234599 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; Scaffold003 rebuild exon 5234682 5234842 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; Scaffold003 rebuild exon 5234972 5234975 . - . gene_id "RvY_08301"; transcript_id "RvY_08301.1"; Scaffold003 rebuild transcript 5236831 5236995 . + . gene_id "RvY_08302"; transcript_id "RvY_08302.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5236831 5236995 . + . gene_id "RvY_08302"; transcript_id "RvY_08302.1"; Scaffold003 rebuild transcript 5240518 5240673 . + . gene_id "RvY_08303"; transcript_id "RvY_08303.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5240518 5240673 . + . gene_id "RvY_08303"; transcript_id "RvY_08303.1"; Scaffold003 rebuild transcript 5240676 5244470 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold003 rebuild exon 5240676 5240843 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; Scaffold003 rebuild exon 5240915 5240962 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; Scaffold003 rebuild exon 5241064 5241133 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; Scaffold003 rebuild exon 5241324 5241444 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; Scaffold003 rebuild exon 5243497 5243616 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; Scaffold003 rebuild exon 5243864 5244470 . + . gene_id "RvY_08304"; transcript_id "RvY_08304.1"; Scaffold003 rebuild transcript 5240696 5240902 . - . gene_id "RvY_08305"; transcript_id "RvY_08305.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5240696 5240902 . - . gene_id "RvY_08305"; transcript_id "RvY_08305.1"; Scaffold003 rebuild transcript 5244855 5247420 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 5244855 5245014 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5245131 5245260 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5245546 5245687 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5245779 5245944 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5246030 5246128 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5246200 5246325 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5246422 5246652 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5246841 5246990 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5247055 5247188 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild exon 5247283 5247420 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.1"; Scaffold003 rebuild transcript 5244855 5247335 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold003 rebuild exon 5244855 5245014 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5245131 5245260 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5245546 5245687 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5245779 5245944 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5246030 5246128 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5246200 5246325 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5246422 5246652 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5246841 5246990 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5247069 5247188 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild exon 5247283 5247335 . - . gene_id "RvY_08306"; transcript_id "RvY_08306.2"; Scaffold003 rebuild transcript 5248021 5248715 . + . gene_id "RvY_08307"; transcript_id "RvY_08307.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5248021 5248114 . + . gene_id "RvY_08307"; transcript_id "RvY_08307.1"; Scaffold003 rebuild exon 5248462 5248715 . + . gene_id "RvY_08307"; transcript_id "RvY_08307.1"; Scaffold003 rebuild transcript 5248890 5250898 . - . gene_id "RvY_08308"; transcript_id "RvY_08308.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold003 rebuild exon 5248890 5249055 . - . gene_id "RvY_08308"; transcript_id "RvY_08308.1"; Scaffold003 rebuild exon 5249273 5250124 . - . gene_id "RvY_08308"; transcript_id "RvY_08308.1"; Scaffold003 rebuild exon 5250507 5250898 . - . gene_id "RvY_08308"; transcript_id "RvY_08308.1"; Scaffold003 rebuild transcript 5251193 5253745 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; gene_name "RHOD"; annotation "hypothetical protein."; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain|[Rhodanese] Rhodanese-like domain"; CDD "Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically Scaffold003 rebuild exon 5251193 5251833 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5252108 5252240 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5252338 5252450 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5252533 5252657 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5252725 5252891 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5253100 5253248 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5253327 5253438 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5253531 5253592 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild exon 5253649 5253745 . - . gene_id "RvY_08309"; transcript_id "RvY_08309.1"; Scaffold003 rebuild transcript 5254283 5256490 . - . gene_id "RvY_08310"; transcript_id "RvY_08310.1"; gene_name "CysJ"; annotation "hypothetical protein."; Pfam "[NAD_binding_1] Oxidoreductase NAD-binding domain|[Flavodoxin_1] Flavodoxin|[FAD_binding_1] FAD binding domain"; CDD "Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]"; EC "EC1.6.-.-"; similar_genes "NDOR1_BOVIN(e-value:2.1e-13;bit-score:74.0)"; Scaffold003 rebuild exon 5254283 5254981 . - . gene_id "RvY_08310"; transcript_id "RvY_08310.1"; Scaffold003 rebuild exon 5255167 5255630 . - . gene_id "RvY_08310"; transcript_id "RvY_08310.1"; Scaffold003 rebuild exon 5255863 5256490 . - . gene_id "RvY_08310"; transcript_id "RvY_08310.1"; Scaffold003 rebuild transcript 5257347 5258373 . + . gene_id "RvY_08311"; transcript_id "RvY_08311.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5257347 5257469 . + . gene_id "RvY_08311"; transcript_id "RvY_08311.1"; Scaffold003 rebuild exon 5257669 5257919 . + . gene_id "RvY_08311"; transcript_id "RvY_08311.1"; Scaffold003 rebuild exon 5258253 5258373 . + . gene_id "RvY_08311"; transcript_id "RvY_08311.1"; Scaffold003 rebuild transcript 5258604 5259096 . - . gene_id "RvY_08312"; transcript_id "RvY_08312.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5258604 5258816 . - . gene_id "RvY_08312"; transcript_id "RvY_08312.1"; Scaffold003 rebuild exon 5258983 5259096 . - . gene_id "RvY_08312"; transcript_id "RvY_08312.1"; Scaffold003 rebuild transcript 5258552 5258854 . - . gene_id "RvY_08312"; transcript_id "RvY_08312.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5258552 5258854 . - . gene_id "RvY_08312"; transcript_id "RvY_08312.2"; Scaffold003 rebuild transcript 5259429 5260886 . + . gene_id "RvY_08313"; transcript_id "RvY_08313.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5259429 5259495 . + . gene_id "RvY_08313"; transcript_id "RvY_08313.1"; Scaffold003 rebuild exon 5260618 5260886 . + . gene_id "RvY_08313"; transcript_id "RvY_08313.1"; Scaffold003 rebuild transcript 5259276 5259584 . + . gene_id "RvY_08313"; transcript_id "RvY_08313.2"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5259276 5259584 . + . gene_id "RvY_08313"; transcript_id "RvY_08313.2"; Scaffold003 rebuild transcript 5269192 5272238 . + . gene_id "RvY_08314"; transcript_id "RvY_08314.1"; annotation "hypothetical protein."; Pfam "[bZIP_2] Basic region leucine zipper"; Scaffold003 rebuild exon 5269192 5269197 . + . gene_id "RvY_08314"; transcript_id "RvY_08314.1"; Scaffold003 rebuild exon 5270815 5271697 . + . gene_id "RvY_08314"; transcript_id "RvY_08314.1"; Scaffold003 rebuild exon 5271997 5272238 . + . gene_id "RvY_08314"; transcript_id "RvY_08314.1"; Scaffold003 rebuild transcript 5273485 5274066 . - . gene_id "RvY_08315"; transcript_id "RvY_08315.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5273485 5274066 . - . gene_id "RvY_08315"; transcript_id "RvY_08315.1"; Scaffold003 rebuild transcript 5275635 5278985 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; gene_name "DDC"; annotation "Aromatic-L-amino-acid decarboxylase"; Pfam "[Pyridoxal_deC] Pyridoxal-dependent decarboxylase conserved domain|[Aminotran_1_2] Aminotransferase class I and II"; CDD "Pyridoxal-dependent decarboxylase conserved domain."; EC "EC4.1.1.28"; KO "K01593"; similar_genes "DDC_MANSE(e-value:7.4e-90;bit-score:328.0)"; Scaffold003 rebuild exon 5275635 5275835 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5275898 5276011 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5276832 5276951 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5277188 5277475 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5277542 5277771 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5278013 5278103 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5278207 5278305 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5278368 5278469 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild exon 5278743 5278985 . + . gene_id "RvY_08316"; transcript_id "RvY_08316.1"; Scaffold003 rebuild transcript 5281841 5282443 . + . gene_id "RvY_08317"; transcript_id "RvY_08317.1"; annotation "hypothetical protein."; Pfam "[bZIP_2] Basic region leucine zipper"; Scaffold003 rebuild exon 5281841 5282052 . + . gene_id "RvY_08317"; transcript_id "RvY_08317.1"; Scaffold003 rebuild exon 5282121 5282144 . + . gene_id "RvY_08317"; transcript_id "RvY_08317.1"; Scaffold003 rebuild exon 5282203 5282443 . + . gene_id "RvY_08317"; transcript_id "RvY_08317.1"; Scaffold003 rebuild transcript 5282443 5283003 . + . gene_id "RvY_08318"; transcript_id "RvY_08318.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5282443 5283003 . + . gene_id "RvY_08318"; transcript_id "RvY_08318.1"; Scaffold003 rebuild transcript 5283864 5286282 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; gene_name "RKIP"; annotation "hypothetical protein."; Pfam "[PBP] Phosphatidylethanolamine-binding protein"; CDD "eukaryotic Raf Kinase Inhibitor Protein (RKIP) and its bacterial/archael homolog PhosphatidylEthanolamine-Binding Protein (PEBP), belong to a highly conserved family of phospholipid-binding proteins represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea) with no significant sequence homology to other proteins. A number of biological roles for PEBP have been identified including serine protease inhibition, membrane biogenesis, and Raf-1 kinase inhibition. In addition, the mammalian PEBPs are believed to be the precursor of HippoCampal Neurostimulatory Peptide (HCNP), a bioactive peptide comprising the first 12 amino acids of PEBP that plays an important role in hippocampus development. PEBP forms a homodimer and a small cavity within each PEBP monomer is thought to serve as a binding site for the polar head group of phosphatidylethanolamine."; similar_genes "RM38_RAT(e-value:1.8e-14;bit-score:77.0)"; Scaffold003 rebuild exon 5283864 5283933 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5284001 5284250 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5284637 5284776 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5284998 5285156 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5285430 5285548 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5285615 5285823 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5285888 5286049 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild exon 5286117 5286282 . - . gene_id "RvY_08319"; transcript_id "RvY_08319.1"; Scaffold003 rebuild transcript 5286818 5289404 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; annotation "putative Protein IWS1 homolog"; Pfam "[Med26] TFIIS helical bundle-like domain"; similar_genes "IWS1_XENTR(e-value:9.9e-41;bit-score:164.0)"; Scaffold003 rebuild exon 5286818 5286912 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5286982 5287167 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5287236 5287309 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5287582 5287786 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5287878 5288166 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5288583 5288778 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5288841 5289184 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild exon 5289288 5289404 . + . gene_id "RvY_08320"; transcript_id "RvY_08320.1"; Scaffold003 rebuild transcript 5291846 5293045 . + . gene_id "RvY_08321"; transcript_id "RvY_08321.1"; annotation "hypothetical protein."; Pfam "[Ninjurin]"; Scaffold003 rebuild exon 5291846 5291995 . + . gene_id "RvY_08321"; transcript_id "RvY_08321.1"; Scaffold003 rebuild exon 5292317 5293045 . + . gene_id "RvY_08321"; transcript_id "RvY_08321.1"; Scaffold003 rebuild transcript 5293786 5299652 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; gene_name "EDC4"; annotation "enhancer of mRNA-decapping protein 4"; KO "K12616"; Scaffold003 rebuild exon 5293786 5293862 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5294044 5294482 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5294716 5295066 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5295299 5295788 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5295993 5296510 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5296807 5297131 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5297381 5297718 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5297999 5298431 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5298751 5299157 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild exon 5299326 5299652 . + . gene_id "RvY_08322"; transcript_id "RvY_08322.1"; Scaffold003 rebuild transcript 5300069 5303219 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5300069 5300135 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; Scaffold003 rebuild exon 5300244 5300284 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; Scaffold003 rebuild exon 5300482 5300671 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; Scaffold003 rebuild exon 5301679 5302269 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; Scaffold003 rebuild exon 5302528 5302840 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; Scaffold003 rebuild exon 5303123 5303219 . + . gene_id "RvY_08323"; transcript_id "RvY_08323.1"; Scaffold003 rebuild transcript 5304027 5305906 . - . gene_id "RvY_08324"; transcript_id "RvY_08324.1"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; EC "EC1.1.1.21"; similar_genes "ALDR_RABIT(e-value:4.7e-15;bit-score:79.0)"; Scaffold003 rebuild exon 5304027 5304212 . - . gene_id "RvY_08324"; transcript_id "RvY_08324.1"; Scaffold003 rebuild exon 5305588 5305755 . - . gene_id "RvY_08324"; transcript_id "RvY_08324.1"; Scaffold003 rebuild exon 5305835 5305906 . - . gene_id "RvY_08324"; transcript_id "RvY_08324.1"; Scaffold003 rebuild transcript 5306372 5308906 . - . gene_id "RvY_08325"; transcript_id "RvY_08325.1"; gene_name "tauD"; annotation "putative Alpha-ketoglutarate-dependent taurine dioxygenase"; Pfam "[TauD] Taurine catabolism dioxygenase TauD, TfdA family"; CDD "taurine dioxygenase; Reviewed"; EC "EC1.14.11.17"; KO "K03119"; similar_genes "TAUD_ECOLI(e-value:1.6e-34;bit-score:144.0)"; Scaffold003 rebuild exon 5306372 5306695 . - . gene_id "RvY_08325"; transcript_id "RvY_08325.1"; Scaffold003 rebuild exon 5307091 5307294 . - . gene_id "RvY_08325"; transcript_id "RvY_08325.1"; Scaffold003 rebuild exon 5308580 5308906 . - . gene_id "RvY_08325"; transcript_id "RvY_08325.1"; Scaffold003 rebuild transcript 5309408 5309776 . + . gene_id "RvY_08326"; transcript_id "RvY_08326.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5309408 5309776 . + . gene_id "RvY_08326"; transcript_id "RvY_08326.1"; Scaffold003 rebuild transcript 5310658 5312929 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; gene_name "adh"; annotation "alcohol dehydrogenase (NADP+) [EC:1.1.1.2]"; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; EC "EC1.1.1.2|EC1.1.1.21"; KO "K00002"; similar_genes "ALD2_CRIGR(e-value:4.3e-20;bit-score:96.0)"; Scaffold003 rebuild exon 5310658 5310700 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5310772 5310938 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5311640 5311828 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5311897 5312013 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5312083 5312159 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5312266 5312389 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5312557 5312724 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild exon 5312855 5312929 . - . gene_id "RvY_08327"; transcript_id "RvY_08327.1"; Scaffold003 rebuild transcript 5315071 5319759 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; gene_name "GcvT"; annotation "hypothetical protein."; Pfam "[GCV_T_C] Glycine cleavage T-protein C-terminal barrel domain|[GCV_T] Aminomethyltransferase folate-binding domain|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[SoxG] Sarcosine oxidase, gamma subunit family|[DAO] FAD dependent oxidoreductase"; CDD "Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]"; similar_genes "PDPR_MOUSE(e-value:6.9e-12;bit-score:69.0)"; Scaffold003 rebuild exon 5315071 5315321 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5315507 5315719 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5315799 5315962 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5316227 5316348 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5316446 5316716 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5317005 5317322 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5317582 5317883 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5317955 5318097 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5318361 5318832 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5319028 5319258 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild exon 5319538 5319759 . + . gene_id "RvY_08328"; transcript_id "RvY_08328.1"; Scaffold003 rebuild transcript 5321811 5323762 . + . gene_id "RvY_08329"; transcript_id "RvY_08329.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold003 rebuild exon 5321811 5321912 . + . gene_id "RvY_08329"; transcript_id "RvY_08329.1"; Scaffold003 rebuild exon 5322006 5322311 . + . gene_id "RvY_08329"; transcript_id "RvY_08329.1"; Scaffold003 rebuild exon 5322395 5322493 . + . gene_id "RvY_08329"; transcript_id "RvY_08329.1"; Scaffold003 rebuild exon 5322582 5322698 . + . gene_id "RvY_08329"; transcript_id "RvY_08329.1"; Scaffold003 rebuild exon 5322986 5323762 . + . gene_id "RvY_08329"; transcript_id "RvY_08329.1"; Scaffold003 rebuild transcript 5324489 5325517 . - . gene_id "RvY_08330"; transcript_id "RvY_08330.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5324489 5325517 . - . gene_id "RvY_08330"; transcript_id "RvY_08330.1"; Scaffold003 rebuild transcript 5326958 5327784 . + . gene_id "RvY_08331"; transcript_id "RvY_08331.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5326958 5327369 . + . gene_id "RvY_08331"; transcript_id "RvY_08331.1"; Scaffold003 rebuild exon 5327417 5327784 . + . gene_id "RvY_08331"; transcript_id "RvY_08331.1"; Scaffold003 rebuild transcript 5327956 5328708 . + . gene_id "RvY_08332"; transcript_id "RvY_08332.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold003 rebuild exon 5327956 5328708 . + . gene_id "RvY_08332"; transcript_id "RvY_08332.1"; Scaffold003 rebuild transcript 5328253 5328923 . + . gene_id "RvY_08332"; transcript_id "RvY_08332.2"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold003 rebuild exon 5328253 5328586 . + . gene_id "RvY_08332"; transcript_id "RvY_08332.2"; Scaffold003 rebuild exon 5328709 5328923 . + . gene_id "RvY_08332"; transcript_id "RvY_08332.2"; Scaffold003 rebuild transcript 5334309 5335017 . - . gene_id "RvY_08333"; transcript_id "RvY_08333.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5334309 5334411 . - . gene_id "RvY_08333"; transcript_id "RvY_08333.1"; Scaffold003 rebuild exon 5334914 5335017 . - . gene_id "RvY_08333"; transcript_id "RvY_08333.1"; Scaffold003 rebuild transcript 5344015 5344620 . - . gene_id "RvY_08334"; transcript_id "RvY_08334.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5344015 5344069 . - . gene_id "RvY_08334"; transcript_id "RvY_08334.1"; Scaffold003 rebuild exon 5344208 5344620 . - . gene_id "RvY_08334"; transcript_id "RvY_08334.1"; Scaffold003 rebuild transcript 5344640 5345251 . - . gene_id "RvY_08335"; transcript_id "RvY_08335.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5344640 5345251 . - . gene_id "RvY_08335"; transcript_id "RvY_08335.1"; Scaffold003 rebuild transcript 5348329 5348655 . + . gene_id "RvY_08336"; transcript_id "RvY_08336.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5348329 5348655 . + . gene_id "RvY_08336"; transcript_id "RvY_08336.1"; Scaffold003 rebuild transcript 5348854 5349054 . + . gene_id "RvY_08337"; transcript_id "RvY_08337.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5348854 5348871 . + . gene_id "RvY_08337"; transcript_id "RvY_08337.1"; Scaffold003 rebuild exon 5348947 5349054 . + . gene_id "RvY_08337"; transcript_id "RvY_08337.1"; Scaffold003 rebuild transcript 5349172 5350873 . + . gene_id "RvY_08338"; transcript_id "RvY_08338.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5349172 5349321 . + . gene_id "RvY_08338"; transcript_id "RvY_08338.1"; Scaffold003 rebuild exon 5349547 5349744 . + . gene_id "RvY_08338"; transcript_id "RvY_08338.1"; Scaffold003 rebuild exon 5349821 5349950 . + . gene_id "RvY_08338"; transcript_id "RvY_08338.1"; Scaffold003 rebuild exon 5350181 5350265 . + . gene_id "RvY_08338"; transcript_id "RvY_08338.1"; Scaffold003 rebuild exon 5350798 5350873 . + . gene_id "RvY_08338"; transcript_id "RvY_08338.1"; Scaffold003 rebuild transcript 5354550 5354870 . + . gene_id "RvY_08339"; transcript_id "RvY_08339.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5354550 5354870 . + . gene_id "RvY_08339"; transcript_id "RvY_08339.1"; Scaffold003 rebuild transcript 5356153 5357986 . - . gene_id "RvY_08340"; transcript_id "RvY_08340.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5356153 5356357 . - . gene_id "RvY_08340"; transcript_id "RvY_08340.1"; Scaffold003 rebuild exon 5357874 5357986 . - . gene_id "RvY_08340"; transcript_id "RvY_08340.1"; Scaffold003 rebuild transcript 5359831 5360013 . - . gene_id "RvY_08341"; transcript_id "RvY_08341.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5359831 5360013 . - . gene_id "RvY_08341"; transcript_id "RvY_08341.1"; Scaffold003 rebuild transcript 5360856 5361773 . - . gene_id "RvY_08342"; transcript_id "RvY_08342.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5360856 5361773 . - . gene_id "RvY_08342"; transcript_id "RvY_08342.1"; Scaffold003 rebuild transcript 5366062 5368706 . + . gene_id "RvY_08343"; transcript_id "RvY_08343.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold003 rebuild exon 5366062 5366083 . + . gene_id "RvY_08343"; transcript_id "RvY_08343.1"; Scaffold003 rebuild exon 5367415 5368706 . + . gene_id "RvY_08343"; transcript_id "RvY_08343.1"; Scaffold003 rebuild transcript 5370889 5371089 . - . gene_id "RvY_08344"; transcript_id "RvY_08344.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5370889 5371089 . - . gene_id "RvY_08344"; transcript_id "RvY_08344.1"; Scaffold003 rebuild transcript 5371568 5372725 . + . gene_id "RvY_08345"; transcript_id "RvY_08345.1"; annotation "hypothetical protein."; Pfam "[Glyco_tranf_2_4] Glycosyl transferase family 2|[Glyco_transf_92] Glycosyltransferase family 92"; Scaffold003 rebuild exon 5371568 5372725 . + . gene_id "RvY_08345"; transcript_id "RvY_08345.1"; Scaffold003 rebuild transcript 5374347 5375251 . - . gene_id "RvY_08346"; transcript_id "RvY_08346.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5374347 5374376 . - . gene_id "RvY_08346"; transcript_id "RvY_08346.1"; Scaffold003 rebuild exon 5374465 5374755 . - . gene_id "RvY_08346"; transcript_id "RvY_08346.1"; Scaffold003 rebuild exon 5374853 5375016 . - . gene_id "RvY_08346"; transcript_id "RvY_08346.1"; Scaffold003 rebuild exon 5375071 5375251 . - . gene_id "RvY_08346"; transcript_id "RvY_08346.1"; Scaffold003 rebuild transcript 5376512 5377029 . - . gene_id "RvY_08347"; transcript_id "RvY_08347.1"; gene_name "kgd"; annotation "hypothetical protein."; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; similar_genes "PRY2_YEAST(e-value:5.1e-08;bit-score:56.0)"; Scaffold003 rebuild exon 5376512 5376675 . - . gene_id "RvY_08347"; transcript_id "RvY_08347.1"; Scaffold003 rebuild exon 5376768 5377029 . - . gene_id "RvY_08347"; transcript_id "RvY_08347.1"; Scaffold003 rebuild transcript 5377860 5378159 . + . gene_id "RvY_08348"; transcript_id "RvY_08348.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5377860 5378159 . + . gene_id "RvY_08348"; transcript_id "RvY_08348.1"; Scaffold003 rebuild transcript 5378845 5385141 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; annotation "hypothetical protein."; Pfam "[Nic96] Nup93/Nic96"; KO "K14309"; Scaffold003 rebuild exon 5378845 5378958 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5381236 5381442 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5381525 5381696 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5382049 5382793 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5383002 5383291 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5383596 5383939 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5384238 5384534 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5384728 5384789 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild exon 5384865 5385141 . - . gene_id "RvY_08349"; transcript_id "RvY_08349.1"; Scaffold003 rebuild transcript 5385925 5387232 . + . gene_id "RvY_08350"; transcript_id "RvY_08350.1"; gene_name "SUA5"; annotation "putative YrdC domain-containing protein, mitochondrial"; Pfam "[Sua5_yciO_yrdC] Telomere recombination"; CDD "Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]"; similar_genes "YRDC_BOVIN(e-value:2.6e-41;bit-score:166.0)"; Scaffold003 rebuild exon 5385925 5386114 . + . gene_id "RvY_08350"; transcript_id "RvY_08350.1"; Scaffold003 rebuild exon 5386199 5386394 . + . gene_id "RvY_08350"; transcript_id "RvY_08350.1"; Scaffold003 rebuild exon 5386459 5386693 . + . gene_id "RvY_08350"; transcript_id "RvY_08350.1"; Scaffold003 rebuild exon 5386884 5387026 . + . gene_id "RvY_08350"; transcript_id "RvY_08350.1"; Scaffold003 rebuild exon 5387115 5387232 . + . gene_id "RvY_08350"; transcript_id "RvY_08350.1"; Scaffold003 rebuild transcript 5387480 5388848 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; gene_name "tdk"; annotation "thymidine kinase [EC:2.7.1.21]"; Pfam "[dNK] Deoxynucleoside kinase"; CDD "Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA."; EC "EC2.7.1.21"; KO "K00857"; Scaffold003 rebuild exon 5387480 5387605 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild exon 5387670 5387747 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild exon 5387809 5387980 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild exon 5388044 5388207 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild exon 5388278 5388331 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild exon 5388448 5388522 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild exon 5388606 5388848 . - . gene_id "RvY_08351"; transcript_id "RvY_08351.1"; Scaffold003 rebuild transcript 5389378 5395064 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; gene_name "eIF-2O"; annotation "Eukaryotic translation initiation factor 5B"; Pfam "[MMR_HSR1] 50S ribosome-binding GTPase|[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU] Elongation factor Tu GTP binding domain|[IF-2] Translation-initiation factor 2"; CDD "translation initiation factor IF-2; Validated"; KO "K03243"; similar_genes "IF2P_RAT(e-value:2.6e-60;bit-score:229.0)"; Scaffold003 rebuild exon 5389378 5389828 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5389897 5390295 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5390589 5391077 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5391355 5391890 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5392181 5392578 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5392851 5393229 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5393288 5393419 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5393616 5393750 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5393986 5394231 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild exon 5394657 5395064 . + . gene_id "RvY_08352"; transcript_id "RvY_08352.1"; Scaffold003 rebuild transcript 5395731 5395937 . + . gene_id "RvY_08353"; transcript_id "RvY_08353.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5395731 5395937 . + . gene_id "RvY_08353"; transcript_id "RvY_08353.1"; Scaffold003 rebuild transcript 5396932 5397732 . - . gene_id "RvY_08354"; transcript_id "RvY_08354.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5396932 5397114 . - . gene_id "RvY_08354"; transcript_id "RvY_08354.1"; Scaffold003 rebuild exon 5397382 5397732 . - . gene_id "RvY_08354"; transcript_id "RvY_08354.1"; Scaffold003 rebuild transcript 5401533 5401724 . - . gene_id "RvY_08355"; transcript_id "RvY_08355.1"; annotation "hypothetical protein."; Scaffold003 rebuild exon 5401533 5401610 . - . gene_id "RvY_08355"; transcript_id "RvY_08355.1"; Scaffold003 rebuild exon 5401695 5401724 . - . gene_id "RvY_08355"; transcript_id "RvY_08355.1"; Scaffold004 framed transcript 330 545 . - . gene_id "RvY_08356"; transcript_id "RvY_08356.1"; annotation "hypothetical protein."; Scaffold004 framed exon 330 545 . - . gene_id "RvY_08356"; transcript_id "RvY_08356.1"; Scaffold004 rebuild transcript 825 3914 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold004 rebuild exon 825 912 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 1005 1097 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 1169 1437 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 1507 1728 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 1801 1875 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 1946 2061 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 2134 2217 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 2277 2340 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 2557 2636 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 2717 2804 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 2874 3093 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 3180 3201 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 3322 3541 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 3636 3781 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild exon 3845 3914 . - . gene_id "RvY_08357"; transcript_id "RvY_08357.1"; Scaffold004 rebuild transcript 6337 6525 . - . gene_id "RvY_08358"; transcript_id "RvY_08358.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 6337 6525 . - . gene_id "RvY_08358"; transcript_id "RvY_08358.1"; Scaffold004 rebuild transcript 8180 9291 . + . gene_id "RvY_08359"; transcript_id "RvY_08359.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 8180 9043 . + . gene_id "RvY_08359"; transcript_id "RvY_08359.1"; Scaffold004 rebuild exon 9205 9291 . + . gene_id "RvY_08359"; transcript_id "RvY_08359.1"; Scaffold004 rebuild transcript 10133 11980 . + . gene_id "RvY_08360"; transcript_id "RvY_08360.1"; gene_name "GCS1"; annotation "mannosyl-oligosaccharide glucosidase [EC:3.2.1.106]"; Pfam "[Glyco_hydro_63] Mannosyl oligosaccharide glucosidase"; EC "EC3.2.1.106"; KO "K01228"; Scaffold004 rebuild exon 10133 10500 . + . gene_id "RvY_08360"; transcript_id "RvY_08360.1"; Scaffold004 rebuild exon 10754 11336 . + . gene_id "RvY_08360"; transcript_id "RvY_08360.1"; Scaffold004 rebuild exon 11783 11980 . + . gene_id "RvY_08360"; transcript_id "RvY_08360.1"; Scaffold004 rebuild transcript 12367 13004 . + . gene_id "RvY_08361"; transcript_id "RvY_08361.1"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_63] Mannosyl oligosaccharide glucosidase"; EC "EC3.2.1.106"; similar_genes "GCS1_CAEEL(e-value:3.6e-13;bit-score:73.0)"; Scaffold004 rebuild exon 12367 12596 . + . gene_id "RvY_08361"; transcript_id "RvY_08361.1"; Scaffold004 rebuild exon 12680 13004 . + . gene_id "RvY_08361"; transcript_id "RvY_08361.1"; Scaffold004 rebuild transcript 13662 14512 . - . gene_id "RvY_08362"; transcript_id "RvY_08362.1"; gene_name "PTZ00057"; annotation "hypothetical protein."; Pfam "[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "glutathione s-transferase; Provisional"; Scaffold004 rebuild exon 13662 13886 . - . gene_id "RvY_08362"; transcript_id "RvY_08362.1"; Scaffold004 rebuild exon 14161 14313 . - . gene_id "RvY_08362"; transcript_id "RvY_08362.1"; Scaffold004 rebuild exon 14348 14512 . - . gene_id "RvY_08362"; transcript_id "RvY_08362.1"; Scaffold004 rebuild transcript 14589 15114 . - . gene_id "RvY_08363"; transcript_id "RvY_08363.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 14589 14827 . - . gene_id "RvY_08363"; transcript_id "RvY_08363.1"; Scaffold004 rebuild exon 14913 15114 . - . gene_id "RvY_08363"; transcript_id "RvY_08363.1"; Scaffold004 rebuild transcript 14960 15184 . + . gene_id "RvY_08364"; transcript_id "RvY_08364.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 14960 15184 . + . gene_id "RvY_08364"; transcript_id "RvY_08364.1"; Scaffold004 rebuild transcript 16901 17113 . + . gene_id "RvY_08365"; transcript_id "RvY_08365.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 16901 17113 . + . gene_id "RvY_08365"; transcript_id "RvY_08365.1"; Scaffold004 rebuild transcript 20768 24902 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; annotation "putative Sorting nexin-33"; Pfam "[BAR_3_WASP_bdg] WASP-binding domain of Sorting nexin protein|[SH3_2] Variant SH3 domain|[PX]|[SH3_1] SH3 domain"; similar_genes "SNX33_XENTR(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 20768 20779 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 21316 21419 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 21491 21557 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 21796 22020 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 22085 22327 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 22454 22579 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 22641 22755 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 22835 22965 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 23042 23142 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 23992 24173 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 24288 24364 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 24421 24510 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 24581 24787 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild exon 24852 24902 . + . gene_id "RvY_08367"; transcript_id "RvY_08367.1"; Scaffold004 rebuild transcript 24947 25279 . + . gene_id "RvY_08368"; transcript_id "RvY_08368.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 24947 25279 . + . gene_id "RvY_08368"; transcript_id "RvY_08368.1"; Scaffold004 rebuild transcript 25308 25802 . - . gene_id "RvY_08369"; transcript_id "RvY_08369.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 25308 25802 . - . gene_id "RvY_08369"; transcript_id "RvY_08369.1"; Scaffold004 rebuild transcript 27693 29944 . - . gene_id "RvY_08370"; transcript_id "RvY_08370.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 27693 27845 . - . gene_id "RvY_08370"; transcript_id "RvY_08370.1"; Scaffold004 rebuild exon 27921 28113 . - . gene_id "RvY_08370"; transcript_id "RvY_08370.1"; Scaffold004 rebuild exon 28193 28291 . - . gene_id "RvY_08370"; transcript_id "RvY_08370.1"; Scaffold004 rebuild exon 29804 29836 . - . gene_id "RvY_08370"; transcript_id "RvY_08370.1"; Scaffold004 rebuild exon 29934 29944 . - . gene_id "RvY_08370"; transcript_id "RvY_08370.1"; Scaffold004 rebuild transcript 31766 32086 . - . gene_id "RvY_08371"; transcript_id "RvY_08371.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 31766 31858 . - . gene_id "RvY_08371"; transcript_id "RvY_08371.1"; Scaffold004 rebuild exon 31982 32086 . - . gene_id "RvY_08371"; transcript_id "RvY_08371.1"; Scaffold004 rebuild transcript 32468 33338 . + . gene_id "RvY_08372"; transcript_id "RvY_08372.1"; gene_name "MAD2"; annotation "mitotic spindle assembly checkpoint protein MAD2"; Pfam "[HORMA]"; KO "K02537"; Scaffold004 rebuild exon 32468 32552 . + . gene_id "RvY_08372"; transcript_id "RvY_08372.1"; Scaffold004 rebuild exon 32627 32773 . + . gene_id "RvY_08372"; transcript_id "RvY_08372.1"; Scaffold004 rebuild exon 32836 32962 . + . gene_id "RvY_08372"; transcript_id "RvY_08372.1"; Scaffold004 rebuild exon 33041 33338 . + . gene_id "RvY_08372"; transcript_id "RvY_08372.1"; Scaffold004 rebuild transcript 33697 35823 . - . gene_id "RvY_08373"; transcript_id "RvY_08373.1"; gene_name "K01412"; annotation "Mitochondrial-processing peptidase subunit alpha"; Pfam "[Peptidase_M16_C] Peptidase M16 inactive domain|[Peptidase_M16] Insulinase (Peptidase family M16)"; CDD "Predicted Zn-dependent peptidases [General function prediction only]"; EC "EC3.4.24.64"; KO "K01412"; similar_genes "MPPA_BOVIN(e-value:1.6e-64;bit-score:243.0)"; Scaffold004 rebuild exon 33697 34020 . - . gene_id "RvY_08373"; transcript_id "RvY_08373.1"; Scaffold004 rebuild exon 34145 34888 . - . gene_id "RvY_08373"; transcript_id "RvY_08373.1"; Scaffold004 rebuild exon 35237 35473 . - . gene_id "RvY_08373"; transcript_id "RvY_08373.1"; Scaffold004 rebuild exon 35542 35823 . - . gene_id "RvY_08373"; transcript_id "RvY_08373.1"; Scaffold004 rebuild transcript 36107 36853 . - . gene_id "RvY_08374"; transcript_id "RvY_08374.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold004 rebuild exon 36107 36665 . - . gene_id "RvY_08374"; transcript_id "RvY_08374.1"; Scaffold004 rebuild exon 36720 36853 . - . gene_id "RvY_08374"; transcript_id "RvY_08374.1"; Scaffold004 rebuild transcript 37480 39246 . + . gene_id "RvY_08375"; transcript_id "RvY_08375.1"; gene_name "SGMS"; annotation "shingomyelin synthase [EC:2.7.8.27]"; Pfam "[PAP2_C] PAP2 superfamily C-terminal"; EC "EC2.7.8.27"; KO "K04714"; similar_genes "SMS1_CHICK(e-value:3.0e-08;bit-score:56.0)"; Scaffold004 rebuild exon 37480 38018 . + . gene_id "RvY_08375"; transcript_id "RvY_08375.1"; Scaffold004 rebuild exon 38271 38388 . + . gene_id "RvY_08375"; transcript_id "RvY_08375.1"; Scaffold004 rebuild exon 38459 38615 . + . gene_id "RvY_08375"; transcript_id "RvY_08375.1"; Scaffold004 rebuild exon 38842 39017 . + . gene_id "RvY_08375"; transcript_id "RvY_08375.1"; Scaffold004 rebuild exon 39088 39246 . + . gene_id "RvY_08375"; transcript_id "RvY_08375.1"; Scaffold004 rebuild transcript 39955 41549 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; gene_name "CCL1"; annotation "(1)putative Cyclin-C(2)Cyclin-C"; Pfam "[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]"; KO "(2)K15161"; similar_genes "(1)CCNC_AEDAE(e-value:2.6e-43;bit-score:173.0)(2)CCNC_AEDAE(e-value:5.5e-69;bit-score:258.0)"; Scaffold004 rebuild exon 39955 39986 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 40056 40162 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 40231 40315 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 40383 40452 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 40525 40939 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 41007 41086 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 41148 41179 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild exon 41354 41549 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.1"; Scaffold004 rebuild transcript 39955 41267 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; gene_name "CCL1"; annotation "(1)putative Cyclin-C(2)Cyclin-C"; Pfam "[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]"; KO "(2)K15161"; similar_genes "(1)CCNC_AEDAE(e-value:2.6e-43;bit-score:173.0)(2)CCNC_AEDAE(e-value:5.5e-69;bit-score:258.0)"; Scaffold004 rebuild exon 39955 39986 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 40056 40162 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 40231 40315 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 40383 40452 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 40525 40576 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 40661 40939 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 41007 41086 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild exon 41148 41267 . + . gene_id "RvY_08376"; transcript_id "RvY_08376.2"; Scaffold004 rebuild transcript 41435 41689 . - . gene_id "RvY_08377"; transcript_id "RvY_08377.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 41435 41689 . - . gene_id "RvY_08377"; transcript_id "RvY_08377.1"; Scaffold004 rebuild transcript 42897 44031 . + . gene_id "RvY_08378"; transcript_id "RvY_08378.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold004 rebuild exon 42897 43227 . + . gene_id "RvY_08378"; transcript_id "RvY_08378.1"; Scaffold004 rebuild exon 43298 44031 . + . gene_id "RvY_08378"; transcript_id "RvY_08378.1"; Scaffold004 rebuild transcript 44317 44903 . - . gene_id "RvY_08379"; transcript_id "RvY_08379.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 44317 44322 . - . gene_id "RvY_08379"; transcript_id "RvY_08379.1"; Scaffold004 rebuild exon 44727 44903 . - . gene_id "RvY_08379"; transcript_id "RvY_08379.1"; Scaffold004 rebuild transcript 45779 47052 . - . gene_id "RvY_08380"; transcript_id "RvY_08380.1"; gene_name "COG0702"; annotation "hypothetical protein."; Pfam "[NAD_binding_10] NADH(P)-binding"; CDD "Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]"; EC "EC1.1.1.-"; similar_genes "HTAI2_GORGO(e-value:3.6e-15;bit-score:79.0)"; Scaffold004 rebuild exon 45779 46034 . - . gene_id "RvY_08380"; transcript_id "RvY_08380.1"; Scaffold004 rebuild exon 46115 46176 . - . gene_id "RvY_08380"; transcript_id "RvY_08380.1"; Scaffold004 rebuild exon 46243 46380 . - . gene_id "RvY_08380"; transcript_id "RvY_08380.1"; Scaffold004 rebuild exon 46574 46681 . - . gene_id "RvY_08380"; transcript_id "RvY_08380.1"; Scaffold004 rebuild exon 46762 47052 . - . gene_id "RvY_08380"; transcript_id "RvY_08380.1"; Scaffold004 rebuild transcript 47208 47570 . - . gene_id "RvY_08381"; transcript_id "RvY_08381.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 47208 47570 . - . gene_id "RvY_08381"; transcript_id "RvY_08381.1"; Scaffold004 rebuild transcript 48855 50619 . + . gene_id "RvY_08382"; transcript_id "RvY_08382.1"; annotation "hypothetical protein."; Pfam "[DUF607] Protein of unknown function, DUF607"; similar_genes "C109A_MOUSE(e-value:3.7e-19;bit-score:93.0)"; Scaffold004 rebuild exon 48855 49223 . + . gene_id "RvY_08382"; transcript_id "RvY_08382.1"; Scaffold004 rebuild exon 49464 49625 . + . gene_id "RvY_08382"; transcript_id "RvY_08382.1"; Scaffold004 rebuild exon 49747 49868 . + . gene_id "RvY_08382"; transcript_id "RvY_08382.1"; Scaffold004 rebuild exon 50117 50198 . + . gene_id "RvY_08382"; transcript_id "RvY_08382.1"; Scaffold004 rebuild exon 50380 50619 . + . gene_id "RvY_08382"; transcript_id "RvY_08382.1"; Scaffold004 rebuild transcript 50898 51125 . - . gene_id "RvY_08383"; transcript_id "RvY_08383.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 50898 51125 . - . gene_id "RvY_08383"; transcript_id "RvY_08383.1"; Scaffold004 rebuild transcript 54762 54935 . - . gene_id "RvY_08384"; transcript_id "RvY_08384.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 54762 54935 . - . gene_id "RvY_08384"; transcript_id "RvY_08384.1"; Scaffold004 rebuild transcript 55635 57561 . + . gene_id "RvY_08385"; transcript_id "RvY_08385.1"; gene_name "MFS"; annotation "Vesicular acetylcholine transporter"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; KO "K14636"; similar_genes "VACHT_DROME(e-value:1.9e-52;bit-score:203.0)"; Scaffold004 rebuild exon 55635 55756 . + . gene_id "RvY_08385"; transcript_id "RvY_08385.1"; Scaffold004 rebuild exon 56094 57561 . + . gene_id "RvY_08385"; transcript_id "RvY_08385.1"; Scaffold004 rebuild transcript 60978 65739 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; gene_name "CHAT"; annotation "choline O-acetyltransferase [EC:2.3.1.6]"; Pfam "[Carn_acyltransf] Choline/Carnitine o-acyltransferase"; EC "EC2.3.1.6"; KO "K00623"; similar_genes "CLAT_CAEEL(e-value:8.8e-25;bit-score:111.0)"; Scaffold004 rebuild exon 60978 61190 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 61673 61791 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 62242 62624 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 62898 63183 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 63259 63561 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 63650 63772 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 64923 65121 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 65325 65462 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild exon 65530 65739 . + . gene_id "RvY_08386"; transcript_id "RvY_08386.1"; Scaffold004 rebuild transcript 68487 69154 . + . gene_id "RvY_08387"; transcript_id "RvY_08387.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold004 rebuild exon 68487 68790 . + . gene_id "RvY_08387"; transcript_id "RvY_08387.1"; Scaffold004 rebuild exon 68907 69154 . + . gene_id "RvY_08387"; transcript_id "RvY_08387.1"; Scaffold004 rebuild transcript 69838 70326 . + . gene_id "RvY_08388"; transcript_id "RvY_08388.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 69838 70326 . + . gene_id "RvY_08388"; transcript_id "RvY_08388.1"; Scaffold004 rebuild transcript 71524 71729 . + . gene_id "RvY_08389"; transcript_id "RvY_08389.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 71524 71646 . + . gene_id "RvY_08389"; transcript_id "RvY_08389.1"; Scaffold004 rebuild exon 71724 71729 . + . gene_id "RvY_08389"; transcript_id "RvY_08389.1"; Scaffold004 rebuild transcript 73356 75245 . + . gene_id "RvY_08390"; transcript_id "RvY_08390.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 73356 73572 . + . gene_id "RvY_08390"; transcript_id "RvY_08390.1"; Scaffold004 rebuild exon 73705 74174 . + . gene_id "RvY_08390"; transcript_id "RvY_08390.1"; Scaffold004 rebuild exon 74332 74534 . + . gene_id "RvY_08390"; transcript_id "RvY_08390.1"; Scaffold004 rebuild exon 74739 74857 . + . gene_id "RvY_08390"; transcript_id "RvY_08390.1"; Scaffold004 rebuild exon 74950 75245 . + . gene_id "RvY_08390"; transcript_id "RvY_08390.1"; Scaffold004 rebuild transcript 77142 78293 . - . gene_id "RvY_08391"; transcript_id "RvY_08391.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold004 rebuild exon 77142 78293 . - . gene_id "RvY_08391"; transcript_id "RvY_08391.1"; Scaffold004 rebuild transcript 83916 85030 . - . gene_id "RvY_08392"; transcript_id "RvY_08392.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 83916 84659 . - . gene_id "RvY_08392"; transcript_id "RvY_08392.1"; Scaffold004 rebuild exon 84719 85030 . - . gene_id "RvY_08392"; transcript_id "RvY_08392.1"; Scaffold004 rebuild transcript 85897 86847 . - . gene_id "RvY_08393"; transcript_id "RvY_08393.1"; gene_name "DUF833"; annotation "hypothetical protein."; Pfam "[NRDE] NRDE protein"; CDD "Protein of unknown function (DUF833). This family is found in eukaryotes, prokaryotes and viruses and has no known function. The Ser/Thr-rich protein T10 has been found to be expressed during early embryogenesis in mice."; Scaffold004 rebuild exon 85897 86847 . - . gene_id "RvY_08393"; transcript_id "RvY_08393.1"; Scaffold004 rebuild transcript 87942 89036 . + . gene_id "RvY_08394"; transcript_id "RvY_08394.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 87942 89036 . + . gene_id "RvY_08394"; transcript_id "RvY_08394.1"; Scaffold004 rebuild transcript 89662 90865 . + . gene_id "RvY_08395"; transcript_id "RvY_08395.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold004 rebuild exon 89662 89746 . + . gene_id "RvY_08395"; transcript_id "RvY_08395.1"; Scaffold004 rebuild exon 89886 89948 . + . gene_id "RvY_08395"; transcript_id "RvY_08395.1"; Scaffold004 rebuild exon 90110 90227 . + . gene_id "RvY_08395"; transcript_id "RvY_08395.1"; Scaffold004 rebuild exon 90374 90549 . + . gene_id "RvY_08395"; transcript_id "RvY_08395.1"; Scaffold004 rebuild exon 90630 90865 . + . gene_id "RvY_08395"; transcript_id "RvY_08395.1"; Scaffold004 rebuild transcript 92363 92879 . + . gene_id "RvY_08396"; transcript_id "RvY_08396.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 92363 92615 . + . gene_id "RvY_08396"; transcript_id "RvY_08396.1"; Scaffold004 rebuild exon 92707 92879 . + . gene_id "RvY_08396"; transcript_id "RvY_08396.1"; Scaffold004 rebuild transcript 93781 96780 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold004 rebuild exon 93781 93978 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; Scaffold004 rebuild exon 94057 94251 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; Scaffold004 rebuild exon 94308 94668 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; Scaffold004 rebuild exon 94727 95042 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; Scaffold004 rebuild exon 95751 95970 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; Scaffold004 rebuild exon 96595 96780 . + . gene_id "RvY_08397"; transcript_id "RvY_08397.1"; Scaffold004 rebuild transcript 97007 99403 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 97007 97054 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; Scaffold004 rebuild exon 97467 97731 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; Scaffold004 rebuild exon 98222 98451 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; Scaffold004 rebuild exon 98575 98712 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; Scaffold004 rebuild exon 98804 99104 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; Scaffold004 rebuild exon 99171 99403 . + . gene_id "RvY_08398"; transcript_id "RvY_08398.1"; Scaffold004 rebuild transcript 99585 99776 . - . gene_id "RvY_08399"; transcript_id "RvY_08399.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 99585 99776 . - . gene_id "RvY_08399"; transcript_id "RvY_08399.1"; Scaffold004 rebuild transcript 99967 100974 . - . gene_id "RvY_08400"; transcript_id "RvY_08400.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 99967 100229 . - . gene_id "RvY_08400"; transcript_id "RvY_08400.1"; Scaffold004 rebuild exon 100749 100974 . - . gene_id "RvY_08400"; transcript_id "RvY_08400.1"; Scaffold004 rebuild transcript 101584 102142 . + . gene_id "RvY_08401"; transcript_id "RvY_08401.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 101584 101671 . + . gene_id "RvY_08401"; transcript_id "RvY_08401.1"; Scaffold004 rebuild exon 101762 101959 . + . gene_id "RvY_08401"; transcript_id "RvY_08401.1"; Scaffold004 rebuild exon 102039 102142 . + . gene_id "RvY_08401"; transcript_id "RvY_08401.1"; Scaffold004 rebuild transcript 102208 103924 . + . gene_id "RvY_08402"; transcript_id "RvY_08402.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 102208 102709 . + . gene_id "RvY_08402"; transcript_id "RvY_08402.1"; Scaffold004 rebuild exon 102781 103050 . + . gene_id "RvY_08402"; transcript_id "RvY_08402.1"; Scaffold004 rebuild exon 103379 103710 . + . gene_id "RvY_08402"; transcript_id "RvY_08402.1"; Scaffold004 rebuild exon 103835 103924 . + . gene_id "RvY_08402"; transcript_id "RvY_08402.1"; Scaffold004 rebuild transcript 104615 105543 . + . gene_id "RvY_08403"; transcript_id "RvY_08403.1"; gene_name "KISc_KIF1A_KIF1B"; annotation "hypothetical protein."; CDD "Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; Scaffold004 rebuild exon 104615 104717 . + . gene_id "RvY_08403"; transcript_id "RvY_08403.1"; Scaffold004 rebuild exon 105398 105543 . + . gene_id "RvY_08403"; transcript_id "RvY_08403.1"; Scaffold004 rebuild transcript 105678 107151 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; gene_name "KISc_KIF1A_KIF1B"; annotation "Kinesin-like protein unc-104"; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; similar_genes "KIF1A_DROPS(e-value:1.9e-92;bit-score:336.0)"; Scaffold004 rebuild exon 105678 105700 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild exon 105824 105923 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild exon 106206 106271 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild exon 106394 106572 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild exon 106696 106807 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild exon 106889 107032 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild exon 107107 107151 . + . gene_id "RvY_08404"; transcript_id "RvY_08404.1"; Scaffold004 rebuild transcript 107189 112960 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; gene_name "(1,2,3)KIF1S(4)KISc_KIF1A_KIF1B"; annotation "putative Kinesin-like protein unc-104"; Pfam "(1,2,3)[PH]|[DUF3694] Kinesin protein|[KIF1B] Kinesin protein 1B|[FHA]|(1)[Kinesin] Kinesin motor domain"; CDD "(1,2,3)Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.(4)Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; KO "(1,2,3)K10392"; similar_genes "KIF1A_ANOGA(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 107189 107288 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 107441 107981 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 108096 108178 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 108254 108445 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 108521 108602 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 108674 109258 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 109802 109939 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 110022 110244 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 110333 110532 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 110596 110695 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 110760 111313 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 111374 111687 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 111780 111925 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 111988 112200 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 112269 112390 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 112451 112631 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild exon 112709 112960 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.1"; Scaffold004 rebuild transcript 107461 112960 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; gene_name "(1,2,3)KIF1S(4)KISc_KIF1A_KIF1B"; annotation "putative Kinesin-like protein unc-104"; Pfam "(1,2,3)[PH]|[DUF3694] Kinesin protein|[KIF1B] Kinesin protein 1B|[FHA]|(1)[Kinesin] Kinesin motor domain"; CDD "(1,2,3)Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.(4)Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; KO "(1,2,3)K10392"; similar_genes "KIF1A_ANOGA(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 107461 107981 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 108096 108178 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 108254 108445 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 108521 108602 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 108674 108953 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 109023 109258 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 109802 109939 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 110022 110244 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 110333 110532 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 110596 110695 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 110760 111313 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 111374 111687 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 111780 111925 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 111988 112200 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 112269 112390 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 112451 112631 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild exon 112709 112960 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.2"; Scaffold004 rebuild transcript 107461 112960 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; gene_name "(1,2,3)KIF1S(4)KISc_KIF1A_KIF1B"; annotation "putative Kinesin-like protein unc-104"; Pfam "(1,2,3)[PH]|[DUF3694] Kinesin protein|[KIF1B] Kinesin protein 1B|[FHA]|(1)[Kinesin] Kinesin motor domain"; CDD "(1,2,3)Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.(4)Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; KO "(1,2,3)K10392"; similar_genes "KIF1A_ANOGA(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 107461 107981 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 108096 108178 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 108254 108445 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 108521 108602 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 108674 108953 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 109023 109258 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 109802 109939 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 110022 110244 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 110333 110532 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 110596 110695 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 110760 111313 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 111374 111678 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 111780 111925 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 111988 112200 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 112269 112390 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 112451 112631 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild exon 112709 112960 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.3"; Scaffold004 rebuild transcript 107461 111878 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; gene_name "(1,2,3)KIF1S(4)KISc_KIF1A_KIF1B"; annotation "putative Kinesin-like protein unc-104"; Pfam "(1,2,3)[PH]|[DUF3694] Kinesin protein|[KIF1B] Kinesin protein 1B|[FHA]|(1)[Kinesin] Kinesin motor domain"; CDD "(1,2,3)Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.(4)Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; KO "(1,2,3)K10392"; similar_genes "KIF1A_ANOGA(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 107461 107981 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 108096 108178 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 108254 108445 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 108521 108602 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 108674 108953 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 109023 109258 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 109802 109939 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 110022 110244 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 110333 110532 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 110596 110695 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 110760 111313 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild exon 111374 111878 . + . gene_id "RvY_08405"; transcript_id "RvY_08405.4"; Scaffold004 rebuild transcript 113475 113759 . - . gene_id "RvY_08406"; transcript_id "RvY_08406.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 113475 113759 . - . gene_id "RvY_08406"; transcript_id "RvY_08406.1"; Scaffold004 rebuild transcript 114445 114606 . + . gene_id "RvY_08407"; transcript_id "RvY_08407.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 114445 114606 . + . gene_id "RvY_08407"; transcript_id "RvY_08407.1"; Scaffold004 rebuild transcript 119180 119416 . + . gene_id "RvY_08408"; transcript_id "RvY_08408.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 119180 119416 . + . gene_id "RvY_08408"; transcript_id "RvY_08408.1"; Scaffold004 rebuild transcript 122344 122847 . + . gene_id "RvY_08409"; transcript_id "RvY_08409.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 122344 122847 . + . gene_id "RvY_08409"; transcript_id "RvY_08409.1"; Scaffold004 rebuild transcript 124250 125735 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 124250 124490 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.1"; Scaffold004 rebuild exon 124810 124885 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.1"; Scaffold004 rebuild exon 124959 125099 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.1"; Scaffold004 rebuild exon 125174 125735 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.1"; Scaffold004 rebuild transcript 123134 124338 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 123134 123371 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.2"; Scaffold004 rebuild exon 123430 123751 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.2"; Scaffold004 rebuild exon 124095 124338 . - . gene_id "RvY_08410"; transcript_id "RvY_08410.2"; Scaffold004 rebuild transcript 128805 131116 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold004 rebuild exon 128805 128933 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 128997 129123 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 129218 129368 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 129440 129501 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 129568 129692 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 129755 129951 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 130041 130248 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 130321 130521 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 130589 130620 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild exon 130696 131116 . + . gene_id "RvY_08411"; transcript_id "RvY_08411.1"; Scaffold004 rebuild transcript 131566 133641 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; gene_name "GlcD"; annotation "D-2-hydroxyglutarate dehydrogenase, mitochondrial"; Pfam "[FAD_binding_4] FAD binding domain|[FAD-oxidase_C] FAD linked oxidases, C-terminal domain"; CDD "FAD/FMN-containing dehydrogenases [Energy production and conversion]"; EC "EC1.1.99.-"; similar_genes "D2HDH_HUMAN(e-value:8.8e-78;bit-score:287.0)"; Scaffold004 rebuild exon 131566 131839 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; Scaffold004 rebuild exon 131925 132122 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; Scaffold004 rebuild exon 132240 132433 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; Scaffold004 rebuild exon 132592 132676 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; Scaffold004 rebuild exon 132770 132853 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; Scaffold004 rebuild exon 132923 133641 . + . gene_id "RvY_08412"; transcript_id "RvY_08412.1"; Scaffold004 rebuild transcript 135349 135516 . - . gene_id "RvY_08413"; transcript_id "RvY_08413.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 135349 135516 . - . gene_id "RvY_08413"; transcript_id "RvY_08413.1"; Scaffold004 rebuild transcript 138622 139006 . - . gene_id "RvY_08414"; transcript_id "RvY_08414.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP2CN_RAT(e-value:6.6e-06;bit-score:49.0)"; Scaffold004 rebuild exon 138622 138800 . - . gene_id "RvY_08414"; transcript_id "RvY_08414.1"; Scaffold004 rebuild exon 138883 139006 . - . gene_id "RvY_08414"; transcript_id "RvY_08414.1"; Scaffold004 rebuild transcript 140210 140482 . + . gene_id "RvY_08415"; transcript_id "RvY_08415.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 140210 140482 . + . gene_id "RvY_08415"; transcript_id "RvY_08415.1"; Scaffold004 rebuild transcript 149642 150919 . + . gene_id "RvY_08416"; transcript_id "RvY_08416.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP2DA_MOUSE(e-value:3.1e-14;bit-score:76.0)"; Scaffold004 rebuild exon 149642 149823 . + . gene_id "RvY_08416"; transcript_id "RvY_08416.1"; Scaffold004 rebuild exon 149906 150194 . + . gene_id "RvY_08416"; transcript_id "RvY_08416.1"; Scaffold004 rebuild exon 150289 150658 . + . gene_id "RvY_08416"; transcript_id "RvY_08416.1"; Scaffold004 rebuild exon 150741 150919 . + . gene_id "RvY_08416"; transcript_id "RvY_08416.1"; Scaffold004 rebuild transcript 153451 153672 . + . gene_id "RvY_08417"; transcript_id "RvY_08417.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 153451 153672 . + . gene_id "RvY_08417"; transcript_id "RvY_08417.1"; Scaffold004 rebuild transcript 153855 154685 . - . gene_id "RvY_08418"; transcript_id "RvY_08418.1"; gene_name "AP2S1"; annotation "AP-2 complex subunit sigma"; Pfam "[Clat_adaptor_s] Clathrin adaptor complex small chain"; CDD "Clathrin adaptor complex small chain."; KO "K11827"; similar_genes "AP2S1_HUMAN(e-value:3.3e-73;bit-score:272.0)"; Scaffold004 rebuild exon 153855 153956 . - . gene_id "RvY_08418"; transcript_id "RvY_08418.1"; Scaffold004 rebuild exon 154072 154245 . - . gene_id "RvY_08418"; transcript_id "RvY_08418.1"; Scaffold004 rebuild exon 154434 154583 . - . gene_id "RvY_08418"; transcript_id "RvY_08418.1"; Scaffold004 rebuild exon 154683 154685 . - . gene_id "RvY_08418"; transcript_id "RvY_08418.1"; Scaffold004 rebuild transcript 157461 158426 . - . gene_id "RvY_08419"; transcript_id "RvY_08419.1"; gene_name "SPRY"; annotation "sprouty"; Pfam "[Sprouty] Sprouty protein (Spry)"; KO "K04704"; Scaffold004 rebuild exon 157461 158426 . - . gene_id "RvY_08419"; transcript_id "RvY_08419.1"; Scaffold004 rebuild transcript 166466 166660 . + . gene_id "RvY_08420"; transcript_id "RvY_08420.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 166466 166660 . + . gene_id "RvY_08420"; transcript_id "RvY_08420.1"; Scaffold004 rebuild transcript 166775 167478 . - . gene_id "RvY_08421"; transcript_id "RvY_08421.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold004 rebuild exon 166775 167009 . - . gene_id "RvY_08421"; transcript_id "RvY_08421.1"; Scaffold004 rebuild exon 167243 167478 . - . gene_id "RvY_08421"; transcript_id "RvY_08421.1"; Scaffold004 rebuild transcript 170241 170855 . + . gene_id "RvY_08422"; transcript_id "RvY_08422.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 170241 170268 . + . gene_id "RvY_08422"; transcript_id "RvY_08422.1"; Scaffold004 rebuild exon 170463 170543 . + . gene_id "RvY_08422"; transcript_id "RvY_08422.1"; Scaffold004 rebuild exon 170638 170855 . + . gene_id "RvY_08422"; transcript_id "RvY_08422.1"; Scaffold004 rebuild transcript 172255 181085 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; gene_name "RERE"; annotation "arginine-glutamic acid dipeptide (RE) repeats"; Pfam "[ELM2]|[BAH]|[GATA] GATA zinc finger"; CDD "BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions."; KO "K05628"; Scaffold004 rebuild exon 172255 172600 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 174216 174295 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 175518 175656 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 176595 176691 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 176986 177388 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 177451 177552 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 177645 177725 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 177914 178166 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 178279 178487 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 178805 179406 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 179493 179712 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 179781 180115 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 180407 180878 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild exon 180963 181085 . + . gene_id "RvY_08423"; transcript_id "RvY_08423.1"; Scaffold004 rebuild transcript 182674 183067 . - . gene_id "RvY_08424"; transcript_id "RvY_08424.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 182674 182784 . - . gene_id "RvY_08424"; transcript_id "RvY_08424.1"; Scaffold004 rebuild exon 182966 183067 . - . gene_id "RvY_08424"; transcript_id "RvY_08424.1"; Scaffold004 rebuild transcript 183177 183335 . + . gene_id "RvY_08425"; transcript_id "RvY_08425.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 183177 183335 . + . gene_id "RvY_08425"; transcript_id "RvY_08425.1"; Scaffold004 rebuild transcript 184698 185841 . - . gene_id "RvY_08426"; transcript_id "RvY_08426.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold004 rebuild exon 184698 185660 . - . gene_id "RvY_08426"; transcript_id "RvY_08426.1"; Scaffold004 rebuild exon 185677 185841 . - . gene_id "RvY_08426"; transcript_id "RvY_08426.1"; Scaffold004 rebuild transcript 186088 186300 . + . gene_id "RvY_08427"; transcript_id "RvY_08427.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 186088 186300 . + . gene_id "RvY_08427"; transcript_id "RvY_08427.1"; Scaffold004 rebuild transcript 187301 188755 . - . gene_id "RvY_08428"; transcript_id "RvY_08428.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 187301 187978 . - . gene_id "RvY_08428"; transcript_id "RvY_08428.1"; Scaffold004 rebuild exon 188183 188755 . - . gene_id "RvY_08428"; transcript_id "RvY_08428.1"; Scaffold004 rebuild transcript 190172 191719 . - . gene_id "RvY_08429"; transcript_id "RvY_08429.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 190172 190948 . - . gene_id "RvY_08429"; transcript_id "RvY_08429.1"; Scaffold004 rebuild exon 191293 191591 . - . gene_id "RvY_08429"; transcript_id "RvY_08429.1"; Scaffold004 rebuild exon 191656 191719 . - . gene_id "RvY_08429"; transcript_id "RvY_08429.1"; Scaffold004 rebuild transcript 193892 194991 . + . gene_id "RvY_08430"; transcript_id "RvY_08430.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 193892 194038 . + . gene_id "RvY_08430"; transcript_id "RvY_08430.1"; Scaffold004 rebuild exon 194516 194660 . + . gene_id "RvY_08430"; transcript_id "RvY_08430.1"; Scaffold004 rebuild exon 194864 194991 . + . gene_id "RvY_08430"; transcript_id "RvY_08430.1"; Scaffold004 rebuild transcript 201223 202167 . + . gene_id "RvY_08431"; transcript_id "RvY_08431.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 201223 201423 . + . gene_id "RvY_08431"; transcript_id "RvY_08431.1"; Scaffold004 rebuild exon 201478 201745 . + . gene_id "RvY_08431"; transcript_id "RvY_08431.1"; Scaffold004 rebuild exon 201824 202167 . + . gene_id "RvY_08431"; transcript_id "RvY_08431.1"; Scaffold004 rebuild transcript 206368 206575 . + . gene_id "RvY_08432"; transcript_id "RvY_08432.1"; annotation "hypothetical protein."; Pfam "[DUF4371]"; Scaffold004 rebuild exon 206368 206509 . + . gene_id "RvY_08432"; transcript_id "RvY_08432.1"; Scaffold004 rebuild exon 206559 206575 . + . gene_id "RvY_08432"; transcript_id "RvY_08432.1"; Scaffold004 rebuild transcript 207009 207657 . - . gene_id "RvY_08433"; transcript_id "RvY_08433.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 207009 207574 . - . gene_id "RvY_08433"; transcript_id "RvY_08433.1"; Scaffold004 rebuild exon 207609 207657 . - . gene_id "RvY_08433"; transcript_id "RvY_08433.1"; Scaffold004 rebuild transcript 208125 208451 . + . gene_id "RvY_08434"; transcript_id "RvY_08434.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 208125 208451 . + . gene_id "RvY_08434"; transcript_id "RvY_08434.1"; Scaffold004 rebuild transcript 208971 209207 . + . gene_id "RvY_08435"; transcript_id "RvY_08435.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 208971 209207 . + . gene_id "RvY_08435"; transcript_id "RvY_08435.1"; Scaffold004 rebuild transcript 210435 213438 . + . gene_id "RvY_08436"; transcript_id "RvY_08436.1"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; EC "EC3.2.1.113"; similar_genes "MA1C1_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold004 rebuild exon 210435 210653 . + . gene_id "RvY_08436"; transcript_id "RvY_08436.1"; Scaffold004 rebuild exon 212974 213438 . + . gene_id "RvY_08436"; transcript_id "RvY_08436.1"; Scaffold004 rebuild transcript 216045 217812 . - . gene_id "RvY_08437"; transcript_id "RvY_08437.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; similar_genes "MUC1_XENLA(e-value:1.0e-06;bit-score:51.0)"; Scaffold004 rebuild exon 216045 216793 . - . gene_id "RvY_08437"; transcript_id "RvY_08437.1"; Scaffold004 rebuild exon 216859 216944 . - . gene_id "RvY_08437"; transcript_id "RvY_08437.1"; Scaffold004 rebuild exon 217051 217136 . - . gene_id "RvY_08437"; transcript_id "RvY_08437.1"; Scaffold004 rebuild exon 217221 217375 . - . gene_id "RvY_08437"; transcript_id "RvY_08437.1"; Scaffold004 rebuild exon 217452 217812 . - . gene_id "RvY_08437"; transcript_id "RvY_08437.1"; Scaffold004 rebuild transcript 221801 232313 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; gene_name "MAST"; annotation "Microtubule-associated serine/threonine-protein kinase 3"; Pfam "[PDZ_2] PDZ domain|[DUF1908]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_MAST: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3."; EC "EC2.7.11.1"; KO "K08789"; similar_genes "MAST3_MOUSE(e-value:1.5e-79;bit-score:293.0)"; Scaffold004 rebuild exon 221801 222384 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 222751 223136 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 223417 223870 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 224110 224456 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 225433 225842 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 226047 226307 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 228553 228672 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 228739 229078 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 229710 230320 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 230538 230829 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 231052 231493 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild exon 232031 232313 . - . gene_id "RvY_08438"; transcript_id "RvY_08438.1"; Scaffold004 rebuild transcript 235094 235781 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.1"; gene_name "(1)Rab28(2)RAB28(3,5)Rab"; annotation "(1,3,4,5)hypothetical protein.(2)Ras-related protein Rab-28"; Pfam "(3,5)[Miro] Miro-like protein|[Ras] Ras family"; CDD "(1,2)Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.(3,5)Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; KO "(2)K07915"; Scaffold004 rebuild exon 235094 235407 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.1"; Scaffold004 rebuild exon 235476 235644 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.1"; Scaffold004 rebuild exon 235752 235781 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.1"; Scaffold004 rebuild transcript 235059 235781 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.2"; gene_name "(1)Rab28(2)RAB28(3,5)Rab"; annotation "(1,3,4,5)hypothetical protein.(2)Ras-related protein Rab-28"; Pfam "(3,5)[Miro] Miro-like protein|[Ras] Ras family"; CDD "(1,2)Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.(3,5)Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; KO "(2)K07915"; Scaffold004 rebuild exon 235059 235142 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.2"; Scaffold004 rebuild exon 235211 235407 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.2"; Scaffold004 rebuild exon 235476 235644 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.2"; Scaffold004 rebuild exon 235752 235781 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.2"; Scaffold004 rebuild transcript 235759 236299 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.3"; gene_name "(1)Rab28(2)RAB28(3,5)Rab"; annotation "(1,3,4,5)hypothetical protein.(2)Ras-related protein Rab-28"; Pfam "(3,5)[Miro] Miro-like protein|[Ras] Ras family"; CDD "(1,2)Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.(3,5)Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; KO "(2)K07915"; Scaffold004 rebuild exon 235759 236100 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.3"; Scaffold004 rebuild exon 236207 236299 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.3"; Scaffold004 rebuild transcript 235759 236299 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.4"; gene_name "(1)Rab28(2)RAB28(3,5)Rab"; annotation "(1,3,4,5)hypothetical protein.(2)Ras-related protein Rab-28"; Pfam "(3,5)[Miro] Miro-like protein|[Ras] Ras family"; CDD "(1,2)Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.(3,5)Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; KO "(2)K07915"; Scaffold004 rebuild exon 235759 235843 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.4"; Scaffold004 rebuild exon 236004 236299 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.4"; Scaffold004 rebuild transcript 235725 236299 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.5"; gene_name "(1)Rab28(2)RAB28(3,5)Rab"; annotation "(1,3,4,5)hypothetical protein.(2)Ras-related protein Rab-28"; Pfam "(3,5)[Miro] Miro-like protein|[Ras] Ras family"; CDD "(1,2)Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.(3,5)Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; KO "(2)K07915"; Scaffold004 rebuild exon 235725 235843 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.5"; Scaffold004 rebuild exon 236004 236100 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.5"; Scaffold004 rebuild exon 236207 236299 . - . gene_id "RvY_08439"; transcript_id "RvY_08439.5"; Scaffold004 rebuild transcript 245177 246019 . + . gene_id "RvY_08440"; transcript_id "RvY_08440.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 245177 245286 . + . gene_id "RvY_08440"; transcript_id "RvY_08440.1"; Scaffold004 rebuild exon 245899 246019 . + . gene_id "RvY_08440"; transcript_id "RvY_08440.1"; Scaffold004 rebuild transcript 246392 248167 . - . gene_id "RvY_08441"; transcript_id "RvY_08441.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold004 rebuild exon 246392 248167 . - . gene_id "RvY_08441"; transcript_id "RvY_08441.1"; Scaffold004 rebuild transcript 248182 249144 . - . gene_id "RvY_08442"; transcript_id "RvY_08442.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 248182 249144 . - . gene_id "RvY_08442"; transcript_id "RvY_08442.1"; Scaffold004 rebuild transcript 250734 252615 . + . gene_id "RvY_08443"; transcript_id "RvY_08443.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 250734 250851 . + . gene_id "RvY_08443"; transcript_id "RvY_08443.1"; Scaffold004 rebuild exon 250929 251523 . + . gene_id "RvY_08443"; transcript_id "RvY_08443.1"; Scaffold004 rebuild exon 251637 252615 . + . gene_id "RvY_08443"; transcript_id "RvY_08443.1"; Scaffold004 rebuild transcript 253513 253902 . - . gene_id "RvY_08444"; transcript_id "RvY_08444.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 253513 253902 . - . gene_id "RvY_08444"; transcript_id "RvY_08444.1"; Scaffold004 rebuild transcript 254133 254435 . + . gene_id "RvY_08445"; transcript_id "RvY_08445.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 254133 254236 . + . gene_id "RvY_08445"; transcript_id "RvY_08445.1"; Scaffold004 rebuild exon 254357 254435 . + . gene_id "RvY_08445"; transcript_id "RvY_08445.1"; Scaffold004 rebuild transcript 256903 257388 . + . gene_id "RvY_08446"; transcript_id "RvY_08446.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 256903 257388 . + . gene_id "RvY_08446"; transcript_id "RvY_08446.1"; Scaffold004 rebuild transcript 257439 257657 . + . gene_id "RvY_08447"; transcript_id "RvY_08447.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 257439 257657 . + . gene_id "RvY_08447"; transcript_id "RvY_08447.1"; Scaffold004 rebuild transcript 260119 266464 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 260119 260491 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; Scaffold004 rebuild exon 262856 263080 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; Scaffold004 rebuild exon 265433 265653 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; Scaffold004 rebuild exon 265796 265897 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; Scaffold004 rebuild exon 266083 266260 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; Scaffold004 rebuild exon 266328 266464 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.1"; Scaffold004 rebuild transcript 260119 263133 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 260119 260491 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.2"; Scaffold004 rebuild exon 262856 263133 . + . gene_id "RvY_08448"; transcript_id "RvY_08448.2"; Scaffold004 rebuild transcript 269186 270236 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.1"; gene_name "ERI-1_3'hExo_like"; annotation "hypothetical protein."; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold004 rebuild exon 269186 269308 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.1"; Scaffold004 rebuild exon 269440 269642 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.1"; Scaffold004 rebuild exon 269882 270236 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.1"; Scaffold004 rebuild transcript 269629 270236 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.2"; gene_name "ERI-1_3'hExo_like"; annotation "hypothetical protein."; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold004 rebuild exon 269629 269642 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.2"; Scaffold004 rebuild exon 269882 270236 . + . gene_id "RvY_08449"; transcript_id "RvY_08449.2"; Scaffold004 rebuild transcript 270820 272593 . + . gene_id "RvY_08450"; transcript_id "RvY_08450.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 270820 270916 . + . gene_id "RvY_08450"; transcript_id "RvY_08450.1"; Scaffold004 rebuild exon 271017 271258 . + . gene_id "RvY_08450"; transcript_id "RvY_08450.1"; Scaffold004 rebuild exon 271448 272593 . + . gene_id "RvY_08450"; transcript_id "RvY_08450.1"; Scaffold004 rebuild transcript 273003 273976 . + . gene_id "RvY_08451"; transcript_id "RvY_08451.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 273003 273027 . + . gene_id "RvY_08451"; transcript_id "RvY_08451.1"; Scaffold004 rebuild exon 273129 273801 . + . gene_id "RvY_08451"; transcript_id "RvY_08451.1"; Scaffold004 rebuild exon 273895 273976 . + . gene_id "RvY_08451"; transcript_id "RvY_08451.1"; Scaffold004 rebuild transcript 274053 274202 . - . gene_id "RvY_08452"; transcript_id "RvY_08452.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 274053 274202 . - . gene_id "RvY_08452"; transcript_id "RvY_08452.1"; Scaffold004 rebuild transcript 276981 284347 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; gene_name "FLT1"; annotation "putative Tyrosine-protein kinase receptor Tie-1"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; KO "K05096"; similar_genes "TIE1_HUMAN(e-value:4.0e-27;bit-score:119.0)"; Scaffold004 rebuild exon 276981 277071 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 278559 278701 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 278974 279178 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 279269 279559 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 279634 279773 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 279841 280339 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 280670 281026 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 281222 281952 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 282028 282181 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 282262 282492 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 282557 282942 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 283420 283631 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild exon 283717 284347 . + . gene_id "RvY_08453"; transcript_id "RvY_08453.1"; Scaffold004 rebuild transcript 284520 285709 . - . gene_id "RvY_08454"; transcript_id "RvY_08454.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold004 rebuild exon 284520 284536 . - . gene_id "RvY_08454"; transcript_id "RvY_08454.1"; Scaffold004 rebuild exon 284623 285018 . - . gene_id "RvY_08454"; transcript_id "RvY_08454.1"; Scaffold004 rebuild exon 285190 285375 . - . gene_id "RvY_08454"; transcript_id "RvY_08454.1"; Scaffold004 rebuild exon 285442 285709 . - . gene_id "RvY_08454"; transcript_id "RvY_08454.1"; Scaffold004 rebuild transcript 285781 287358 . + . gene_id "RvY_08455"; transcript_id "RvY_08455.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold004 rebuild exon 285781 286778 . + . gene_id "RvY_08455"; transcript_id "RvY_08455.1"; Scaffold004 rebuild exon 287298 287358 . + . gene_id "RvY_08455"; transcript_id "RvY_08455.1"; Scaffold004 rebuild transcript 287677 288718 . - . gene_id "RvY_08456"; transcript_id "RvY_08456.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 287677 288227 . - . gene_id "RvY_08456"; transcript_id "RvY_08456.1"; Scaffold004 rebuild exon 288349 288718 . - . gene_id "RvY_08456"; transcript_id "RvY_08456.1"; Scaffold004 rebuild transcript 294437 295491 . - . gene_id "RvY_08457"; transcript_id "RvY_08457.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 294437 294876 . - . gene_id "RvY_08457"; transcript_id "RvY_08457.1"; Scaffold004 rebuild exon 295215 295491 . - . gene_id "RvY_08457"; transcript_id "RvY_08457.1"; Scaffold004 rebuild transcript 295809 297467 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 295809 295932 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild exon 296013 296519 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild exon 296649 296711 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild exon 296808 296906 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild exon 296976 297038 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild exon 297113 297397 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild exon 297460 297467 . + . gene_id "RvY_08458"; transcript_id "RvY_08458.1"; Scaffold004 rebuild transcript 299202 301571 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; gene_name "NAGA"; annotation "Alpha-galactosidase A"; Pfam "[Melibiase]"; CDD "Melibiase."; EC "EC3.2.1.22|EC3.2.1.49"; KO "K01204"; similar_genes "AGAL_HUMAN(e-value:2.9e-55;bit-score:213.0)"; Scaffold004 rebuild exon 299202 299289 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 299418 299502 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 299562 299644 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 299716 299807 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 299883 300057 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 300207 300301 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 300406 300593 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 300664 300926 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 300983 301212 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild exon 301302 301571 . + . gene_id "RvY_08459"; transcript_id "RvY_08459.1"; Scaffold004 rebuild transcript 301620 302488 . - . gene_id "RvY_08460"; transcript_id "RvY_08460.1"; annotation "hypothetical protein."; similar_genes "CB5D1_XENTR(e-value:6.5e-21;bit-score:99.0)"; Scaffold004 rebuild exon 301620 301850 . - . gene_id "RvY_08460"; transcript_id "RvY_08460.1"; Scaffold004 rebuild exon 301889 302488 . - . gene_id "RvY_08460"; transcript_id "RvY_08460.1"; Scaffold004 rebuild transcript 304331 306858 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold004 rebuild exon 304331 304508 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; Scaffold004 rebuild exon 305096 305308 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; Scaffold004 rebuild exon 305382 305525 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; Scaffold004 rebuild exon 305736 306407 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; Scaffold004 rebuild exon 306479 306604 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; Scaffold004 rebuild exon 306674 306858 . + . gene_id "RvY_08461"; transcript_id "RvY_08461.1"; Scaffold004 rebuild transcript 308528 310309 . + . gene_id "RvY_08462"; transcript_id "RvY_08462.1"; gene_name "CRBN"; annotation "cereblon"; Pfam "[LON] ATP-dependent protease La (LON) domain"; KO "K11793"; Scaffold004 rebuild exon 308528 308638 . + . gene_id "RvY_08462"; transcript_id "RvY_08462.1"; Scaffold004 rebuild exon 308715 309015 . + . gene_id "RvY_08462"; transcript_id "RvY_08462.1"; Scaffold004 rebuild exon 309292 309741 . + . gene_id "RvY_08462"; transcript_id "RvY_08462.1"; Scaffold004 rebuild exon 309906 310309 . + . gene_id "RvY_08462"; transcript_id "RvY_08462.1"; Scaffold004 rebuild transcript 310687 311010 . - . gene_id "RvY_08463"; transcript_id "RvY_08463.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 310687 311010 . - . gene_id "RvY_08463"; transcript_id "RvY_08463.1"; Scaffold004 rebuild transcript 311297 312639 . - . gene_id "RvY_08464"; transcript_id "RvY_08464.1"; gene_name "RPC5"; annotation "DNA-directed RNA Polymerase III subunit C5 [EC:2.7.7.6]"; Pfam "[RNA_pol_L] RNA polymerase Rpb3/Rpb11 dimerisation domain|[RNA_pol_A_bac] RNA polymerase Rpb3/RpoA insert domain"; CDD "AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subunit heterodimerizes with the RPB11 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC40 to RPB3 suggests a similar function. The AC40 subunit is likely to associate with the RPB11 counterpart, AC19, to form a heterodimer, which stabilizes the association of the two largest subunits of RNAP I and RNAP III."; EC "EC2.7.7.6"; KO "K03027"; similar_genes "RPAC1_MOUSE(e-value:1.2e-17;bit-score:88.0)"; Scaffold004 rebuild exon 311297 311535 . - . gene_id "RvY_08464"; transcript_id "RvY_08464.1"; Scaffold004 rebuild exon 311656 312199 . - . gene_id "RvY_08464"; transcript_id "RvY_08464.1"; Scaffold004 rebuild exon 312339 312514 . - . gene_id "RvY_08464"; transcript_id "RvY_08464.1"; Scaffold004 rebuild exon 312588 312639 . - . gene_id "RvY_08464"; transcript_id "RvY_08464.1"; Scaffold004 rebuild transcript 313129 315171 . + . gene_id "RvY_08465"; transcript_id "RvY_08465.1"; gene_name "COG2119"; annotation "putative Transmembrane protein 165"; Pfam "[UPF0016] Uncharacterized protein family UPF0016"; CDD "Predicted membrane protein [Function unknown]"; similar_genes "TM165_MOUSE(e-value:2.6e-41;bit-score:166.0)"; Scaffold004 rebuild exon 313129 313290 . + . gene_id "RvY_08465"; transcript_id "RvY_08465.1"; Scaffold004 rebuild exon 313471 313726 . + . gene_id "RvY_08465"; transcript_id "RvY_08465.1"; Scaffold004 rebuild exon 314371 314469 . + . gene_id "RvY_08465"; transcript_id "RvY_08465.1"; Scaffold004 rebuild exon 314634 315002 . + . gene_id "RvY_08465"; transcript_id "RvY_08465.1"; Scaffold004 rebuild exon 315062 315171 . + . gene_id "RvY_08465"; transcript_id "RvY_08465.1"; Scaffold004 rebuild transcript 316645 318176 . - . gene_id "RvY_08466"; transcript_id "RvY_08466.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 316645 317660 . - . gene_id "RvY_08466"; transcript_id "RvY_08466.1"; Scaffold004 rebuild exon 318035 318176 . - . gene_id "RvY_08466"; transcript_id "RvY_08466.1"; Scaffold004 rebuild transcript 318685 318915 . + . gene_id "RvY_08467"; transcript_id "RvY_08467.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 318685 318915 . + . gene_id "RvY_08467"; transcript_id "RvY_08467.1"; Scaffold004 rebuild transcript 319289 329110 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; gene_name "caca"; annotation "hypothetical protein."; Pfam "[Calx-beta]"; CDD "sodium/calcium exchanger 1. This Hmm is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family"; similar_genes "FREM3_HUMAN(e-value:2.9e-06;bit-score:50.0)"; Scaffold004 rebuild exon 319289 319405 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 319472 319602 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 319689 319808 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 319883 320273 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 320424 320788 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 320871 321246 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 321311 321382 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 321459 321664 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 321800 322390 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 322476 322811 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 322873 323502 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 323771 324815 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 325100 326187 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 326442 327070 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 327224 327641 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild exon 327907 329110 . - . gene_id "RvY_08468"; transcript_id "RvY_08468.1"; Scaffold004 rebuild transcript 330376 333168 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold004 rebuild exon 330376 330583 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 330645 330780 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 330863 331101 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 331205 331438 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 331503 332309 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 332376 332530 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 332592 332727 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 332791 333017 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild exon 333112 333168 . + . gene_id "RvY_08469"; transcript_id "RvY_08469.1"; Scaffold004 rebuild transcript 338748 339119 . + . gene_id "RvY_08470"; transcript_id "RvY_08470.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 338748 338912 . + . gene_id "RvY_08470"; transcript_id "RvY_08470.1"; Scaffold004 rebuild exon 338979 339119 . + . gene_id "RvY_08470"; transcript_id "RvY_08470.1"; Scaffold004 rebuild transcript 339421 339657 . - . gene_id "RvY_08471"; transcript_id "RvY_08471.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 339421 339657 . - . gene_id "RvY_08471"; transcript_id "RvY_08471.1"; Scaffold004 rebuild transcript 339850 340158 . + . gene_id "RvY_08472"; transcript_id "RvY_08472.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 339850 340158 . + . gene_id "RvY_08472"; transcript_id "RvY_08472.1"; Scaffold004 rebuild transcript 341725 342506 . + . gene_id "RvY_08473"; transcript_id "RvY_08473.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 341725 341830 . + . gene_id "RvY_08473"; transcript_id "RvY_08473.1"; Scaffold004 rebuild exon 342421 342506 . + . gene_id "RvY_08473"; transcript_id "RvY_08473.1"; Scaffold004 rebuild transcript 347869 348303 . - . gene_id "RvY_08474"; transcript_id "RvY_08474.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 347869 348303 . - . gene_id "RvY_08474"; transcript_id "RvY_08474.1"; Scaffold004 rebuild transcript 351274 351723 . - . gene_id "RvY_08475"; transcript_id "RvY_08475.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 351274 351723 . - . gene_id "RvY_08475"; transcript_id "RvY_08475.1"; Scaffold004 rebuild transcript 351775 352371 . - . gene_id "RvY_08476"; transcript_id "RvY_08476.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 351775 352371 . - . gene_id "RvY_08476"; transcript_id "RvY_08476.1"; Scaffold004 rebuild transcript 352394 352573 . + . gene_id "RvY_08477"; transcript_id "RvY_08477.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 352394 352573 . + . gene_id "RvY_08477"; transcript_id "RvY_08477.1"; Scaffold004 rebuild transcript 357580 357814 . + . gene_id "RvY_08478"; transcript_id "RvY_08478.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 357580 357706 . + . gene_id "RvY_08478"; transcript_id "RvY_08478.1"; Scaffold004 rebuild exon 357804 357814 . + . gene_id "RvY_08478"; transcript_id "RvY_08478.1"; Scaffold004 rebuild transcript 357897 359598 . + . gene_id "RvY_08479"; transcript_id "RvY_08479.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 357897 358161 . + . gene_id "RvY_08479"; transcript_id "RvY_08479.1"; Scaffold004 rebuild exon 359107 359400 . + . gene_id "RvY_08479"; transcript_id "RvY_08479.1"; Scaffold004 rebuild exon 359495 359598 . + . gene_id "RvY_08479"; transcript_id "RvY_08479.1"; Scaffold004 rebuild transcript 362341 362898 . - . gene_id "RvY_08480"; transcript_id "RvY_08480.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold004 rebuild exon 362341 362898 . - . gene_id "RvY_08480"; transcript_id "RvY_08480.1"; Scaffold004 rebuild transcript 363133 363504 . - . gene_id "RvY_08481"; transcript_id "RvY_08481.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 363133 363504 . - . gene_id "RvY_08481"; transcript_id "RvY_08481.1"; Scaffold004 rebuild transcript 363787 364060 . - . gene_id "RvY_08482"; transcript_id "RvY_08482.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 363787 363870 . - . gene_id "RvY_08482"; transcript_id "RvY_08482.1"; Scaffold004 rebuild exon 363938 364060 . - . gene_id "RvY_08482"; transcript_id "RvY_08482.1"; Scaffold004 rebuild transcript 364838 365154 . - . gene_id "RvY_08483"; transcript_id "RvY_08483.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 364838 365035 . - . gene_id "RvY_08483"; transcript_id "RvY_08483.1"; Scaffold004 rebuild exon 365122 365154 . - . gene_id "RvY_08483"; transcript_id "RvY_08483.1"; Scaffold004 rebuild transcript 367063 367521 . - . gene_id "RvY_08484"; transcript_id "RvY_08484.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 367063 367521 . - . gene_id "RvY_08484"; transcript_id "RvY_08484.1"; Scaffold004 rebuild transcript 365554 367521 . - . gene_id "RvY_08484"; transcript_id "RvY_08484.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 365554 365571 . - . gene_id "RvY_08484"; transcript_id "RvY_08484.2"; Scaffold004 rebuild exon 367105 367521 . - . gene_id "RvY_08484"; transcript_id "RvY_08484.2"; Scaffold004 rebuild transcript 367780 369094 . - . gene_id "RvY_08485"; transcript_id "RvY_08485.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 367780 368327 . - . gene_id "RvY_08485"; transcript_id "RvY_08485.1"; Scaffold004 rebuild exon 368584 369094 . - . gene_id "RvY_08485"; transcript_id "RvY_08485.1"; Scaffold004 rebuild transcript 369828 373917 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; Scaffold004 rebuild exon 369828 369947 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 370013 370197 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 370448 370847 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 371003 371476 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 371817 372068 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 372165 372287 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 372343 372471 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 372547 372586 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 372647 372783 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 372948 373095 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 373279 373388 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 373453 373498 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild exon 373772 373917 . - . gene_id "RvY_08486"; transcript_id "RvY_08486.1"; Scaffold004 rebuild transcript 375334 378158 . + . gene_id "RvY_08487"; transcript_id "RvY_08487.1"; gene_name "K01112"; annotation "putative Myotubularin-related protein 2"; Pfam "[Y_phosphatase_m] Myotubularin Y_phosphatase-like|[Myotub-related] Myotubularin-related"; EC "EC3.1.3.-"; KO "K01112"; similar_genes "MTMR2_BOVIN(e-value:8.9e-44;bit-score:174.0)"; Scaffold004 rebuild exon 375334 375647 . + . gene_id "RvY_08487"; transcript_id "RvY_08487.1"; Scaffold004 rebuild exon 375794 376700 . + . gene_id "RvY_08487"; transcript_id "RvY_08487.1"; Scaffold004 rebuild exon 376895 377290 . + . gene_id "RvY_08487"; transcript_id "RvY_08487.1"; Scaffold004 rebuild exon 377358 377561 . + . gene_id "RvY_08487"; transcript_id "RvY_08487.1"; Scaffold004 rebuild exon 377778 378158 . + . gene_id "RvY_08487"; transcript_id "RvY_08487.1"; Scaffold004 rebuild transcript 379877 380994 . - . gene_id "RvY_08488"; transcript_id "RvY_08488.1"; gene_name "EVX"; annotation "putative Segmentation protein even-skipped"; Pfam "[Homeobox]"; KO "K09320"; similar_genes "EVE_DROME(e-value:1.6e-28;bit-score:124.0)"; Scaffold004 rebuild exon 379877 380323 . - . gene_id "RvY_08488"; transcript_id "RvY_08488.1"; Scaffold004 rebuild exon 380630 380796 . - . gene_id "RvY_08488"; transcript_id "RvY_08488.1"; Scaffold004 rebuild exon 380907 380994 . - . gene_id "RvY_08488"; transcript_id "RvY_08488.1"; Scaffold004 rebuild transcript 385279 386096 . - . gene_id "RvY_08489"; transcript_id "RvY_08489.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 385279 385411 . - . gene_id "RvY_08489"; transcript_id "RvY_08489.1"; Scaffold004 rebuild exon 385594 386096 . - . gene_id "RvY_08489"; transcript_id "RvY_08489.1"; Scaffold004 rebuild transcript 386764 388012 . - . gene_id "RvY_08490"; transcript_id "RvY_08490.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 386764 387884 . - . gene_id "RvY_08490"; transcript_id "RvY_08490.2"; Scaffold004 rebuild exon 387955 388012 . - . gene_id "RvY_08490"; transcript_id "RvY_08490.2"; Scaffold004 rebuild transcript 389062 392668 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; gene_name "NADSYN1"; annotation "Glutamine-dependent NAD(+) synthetase"; Pfam "[CN_hydrolase] Carbon-nitrogen hydrolase|[NAD_synthase] NAD synthase"; CDD "Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their Scaffold004 rebuild exon 389062 389163 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 389229 389534 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 389687 389756 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 389838 389969 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 390186 390597 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 390821 390972 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 391075 391205 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 391265 391339 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 391427 391558 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 391613 391819 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 391895 392036 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 392098 392151 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 392217 392333 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 392429 392489 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild exon 392584 392668 . - . gene_id "RvY_08491"; transcript_id "RvY_08491.1"; Scaffold004 rebuild transcript 393335 393925 . + . gene_id "RvY_08492"; transcript_id "RvY_08492.1"; gene_name "RP-L31e"; annotation "putative 60S ribosomal protein L31"; Pfam "[Ribosomal_L31e] Ribosomal protein L31e"; KO "K02910"; similar_genes "RL31_SPOFR(e-value:7.9e-47;bit-score:185.0)"; Scaffold004 rebuild exon 393335 393432 . + . gene_id "RvY_08492"; transcript_id "RvY_08492.1"; Scaffold004 rebuild exon 393499 393624 . + . gene_id "RvY_08492"; transcript_id "RvY_08492.1"; Scaffold004 rebuild exon 393708 393820 . + . gene_id "RvY_08492"; transcript_id "RvY_08492.1"; Scaffold004 rebuild exon 393891 393925 . + . gene_id "RvY_08492"; transcript_id "RvY_08492.1"; Scaffold004 rebuild transcript 394300 396746 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; gene_name "RhoGAP-p50rhoGAP"; annotation "putative Rho GTPase-activating protein 8"; Pfam "[CRAL_TRIO_2] Divergent CRAL/TRIO domain|[RhoGAP]|[CRAL_TRIO] CRAL/TRIO domain"; CDD "RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially Scaffold004 rebuild exon 394300 394580 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 394885 395091 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 395165 395235 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 395315 395422 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 395481 395579 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 395668 395754 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 395855 395986 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 396333 396570 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild exon 396632 396746 . - . gene_id "RvY_08493"; transcript_id "RvY_08493.1"; Scaffold004 rebuild transcript 397253 399419 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; annotation "hypothetical protein."; Pfam "[G-patch]"; similar_genes "ZGPAT_ANOGA(e-value:1.2e-15;bit-score:81.0)"; Scaffold004 rebuild exon 397253 397288 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild exon 397353 397452 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild exon 397563 398013 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild exon 398069 398559 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild exon 398749 399035 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild exon 399107 399189 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild exon 399281 399419 . + . gene_id "RvY_08494"; transcript_id "RvY_08494.1"; Scaffold004 rebuild transcript 400138 402031 . - . gene_id "RvY_08495"; transcript_id "RvY_08495.1"; annotation "hypothetical protein."; Pfam "[Spond_N] Spondin_N"; Scaffold004 rebuild exon 400138 400780 . - . gene_id "RvY_08495"; transcript_id "RvY_08495.1"; Scaffold004 rebuild exon 400877 401404 . - . gene_id "RvY_08495"; transcript_id "RvY_08495.1"; Scaffold004 rebuild exon 401497 401746 . - . gene_id "RvY_08495"; transcript_id "RvY_08495.1"; Scaffold004 rebuild exon 401809 402031 . - . gene_id "RvY_08495"; transcript_id "RvY_08495.1"; Scaffold004 rebuild transcript 402898 403140 . + . gene_id "RvY_08496"; transcript_id "RvY_08496.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 402898 403140 . + . gene_id "RvY_08496"; transcript_id "RvY_08496.1"; Scaffold004 rebuild transcript 404121 406802 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; gene_name "LDLa"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia."; Scaffold004 rebuild exon 404121 404131 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; Scaffold004 rebuild exon 404238 405412 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; Scaffold004 rebuild exon 405479 405727 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; Scaffold004 rebuild exon 405790 406087 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; Scaffold004 rebuild exon 406159 406322 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; Scaffold004 rebuild exon 406384 406802 . + . gene_id "RvY_08497"; transcript_id "RvY_08497.1"; Scaffold004 rebuild transcript 407074 407760 . - . gene_id "RvY_08498"; transcript_id "RvY_08498.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 407074 407228 . - . gene_id "RvY_08498"; transcript_id "RvY_08498.1"; Scaffold004 rebuild exon 407322 407760 . - . gene_id "RvY_08498"; transcript_id "RvY_08498.1"; Scaffold004 rebuild transcript 410889 411851 . + . gene_id "RvY_08499"; transcript_id "RvY_08499.1"; annotation "hypothetical protein."; Pfam "[HtrL_YibB] Bacterial protein of unknown function (HtrL_YibB)"; Scaffold004 rebuild exon 410889 411851 . + . gene_id "RvY_08499"; transcript_id "RvY_08499.1"; Scaffold004 rebuild transcript 413128 413511 . - . gene_id "RvY_08500"; transcript_id "RvY_08500.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 413128 413511 . - . gene_id "RvY_08500"; transcript_id "RvY_08500.1"; Scaffold004 rebuild transcript 413738 416070 . - . gene_id "RvY_08501"; transcript_id "RvY_08501.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold004 rebuild exon 413738 413864 . - . gene_id "RvY_08501"; transcript_id "RvY_08501.1"; Scaffold004 rebuild exon 413958 414109 . - . gene_id "RvY_08501"; transcript_id "RvY_08501.1"; Scaffold004 rebuild exon 414328 415170 . - . gene_id "RvY_08501"; transcript_id "RvY_08501.1"; Scaffold004 rebuild exon 415321 416070 . - . gene_id "RvY_08501"; transcript_id "RvY_08501.1"; Scaffold004 rebuild transcript 417126 418111 . + . gene_id "RvY_08502"; transcript_id "RvY_08502.1"; gene_name "ERI-1_3'hExo_like"; annotation "hypothetical protein."; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold004 rebuild exon 417126 417248 . + . gene_id "RvY_08502"; transcript_id "RvY_08502.1"; Scaffold004 rebuild exon 417347 417585 . + . gene_id "RvY_08502"; transcript_id "RvY_08502.1"; Scaffold004 rebuild exon 417700 418111 . + . gene_id "RvY_08502"; transcript_id "RvY_08502.1"; Scaffold004 rebuild transcript 424285 428811 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; gene_name "TTBK"; annotation "Tau-tubulin kinase 1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1|EC2.7.11.26"; KO "K08815"; similar_genes "TTBK1_HUMAN(e-value:2.6e-58;bit-score:223.0)"; Scaffold004 rebuild exon 424285 424350 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 424587 424734 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 425442 425766 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 425991 426051 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 426161 426522 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 427139 427650 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 427851 428637 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild exon 428736 428811 . + . gene_id "RvY_08503"; transcript_id "RvY_08503.1"; Scaffold004 rebuild transcript 434823 435266 . - . gene_id "RvY_08504"; transcript_id "RvY_08504.1"; annotation "hypothetical protein."; Pfam "[TIR]"; Scaffold004 rebuild exon 434823 434999 . - . gene_id "RvY_08504"; transcript_id "RvY_08504.1"; Scaffold004 rebuild exon 435177 435266 . - . gene_id "RvY_08504"; transcript_id "RvY_08504.1"; Scaffold004 rebuild transcript 435449 435658 . - . gene_id "RvY_08505"; transcript_id "RvY_08505.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 435449 435658 . - . gene_id "RvY_08505"; transcript_id "RvY_08505.1"; Scaffold004 rebuild transcript 437403 439609 . - . gene_id "RvY_08506"; transcript_id "RvY_08506.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 437403 437494 . - . gene_id "RvY_08506"; transcript_id "RvY_08506.1"; Scaffold004 rebuild exon 438455 438638 . - . gene_id "RvY_08506"; transcript_id "RvY_08506.1"; Scaffold004 rebuild exon 439418 439609 . - . gene_id "RvY_08506"; transcript_id "RvY_08506.1"; Scaffold004 rebuild transcript 438447 438740 . - . gene_id "RvY_08506"; transcript_id "RvY_08506.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 438447 438740 . - . gene_id "RvY_08506"; transcript_id "RvY_08506.2"; Scaffold004 rebuild transcript 441041 441292 . - . gene_id "RvY_08507"; transcript_id "RvY_08507.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 441041 441292 . - . gene_id "RvY_08507"; transcript_id "RvY_08507.1"; Scaffold004 rebuild transcript 444098 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; gene_name "ANK"; annotation "(1,2,3)Ankyrin-2(4,5)putative Ankyrin-3"; Pfam "(1,2,3)[Ank_4] Ankyrin repeats (many copies)|[Death]|(1,2,3)[Ank_2] Ankyrin repeats (3 copies)|(1,2,3)[Ank_3] Ankyrin repeat|(1,2,3)[Ank] Ankyrin repeat|[ZU5]|(1,2,3)[Ank_5] Ankyrin repeats (many copies)"; KO "K10380"; similar_genes "(1,2,3)ANK2_HUMAN(e-value:2.3e-167;bit-score:585.0)(4,5)ANK3_HUMAN(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 444098 444205 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 447448 447549 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 447737 447835 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 447921 448311 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 448500 448696 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 448808 448906 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 449101 449595 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 449842 450237 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 450400 450597 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 450681 450779 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 450855 450953 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 451235 451333 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 451569 451752 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 452173 455739 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 456024 456390 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 456630 456788 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 457819 458043 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 458198 458358 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 458449 458868 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 459013 459317 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 459439 459714 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 459861 460360 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 460443 460519 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 460607 460828 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 460987 461436 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 461505 461663 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 465599 465859 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 476933 478477 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 478836 478901 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild exon 478971 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.1"; Scaffold004 rebuild transcript 444098 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; gene_name "ANK"; annotation "(1,2,3)Ankyrin-2(4,5)putative Ankyrin-3"; Pfam "(1,2,3)[Ank_4] Ankyrin repeats (many copies)|[Death]|(1,2,3)[Ank_2] Ankyrin repeats (3 copies)|(1,2,3)[Ank_3] Ankyrin repeat|(1,2,3)[Ank] Ankyrin repeat|[ZU5]|(1,2,3)[Ank_5] Ankyrin repeats (many copies)"; KO "K10380"; similar_genes "(1,2,3)ANK2_HUMAN(e-value:2.3e-167;bit-score:585.0)(4,5)ANK3_HUMAN(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 444098 444205 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 447448 447549 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 447737 447835 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 447921 448311 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 448500 448696 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 448808 448906 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 449101 449595 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 449842 450237 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 450400 450597 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 450681 450779 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 450855 450953 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 451235 451333 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 451569 451752 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 452173 455739 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 456024 456390 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 456630 456788 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 457819 458043 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 458198 458358 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 458449 458868 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 459013 459317 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 459439 459714 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 459861 460360 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 460443 460519 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 460607 460828 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 460987 461436 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 461505 461663 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 465599 465859 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 476933 477346 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 478836 478901 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild exon 478971 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.2"; Scaffold004 rebuild transcript 444098 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; gene_name "ANK"; annotation "(1,2,3)Ankyrin-2(4,5)putative Ankyrin-3"; Pfam "(1,2,3)[Ank_4] Ankyrin repeats (many copies)|[Death]|(1,2,3)[Ank_2] Ankyrin repeats (3 copies)|(1,2,3)[Ank_3] Ankyrin repeat|(1,2,3)[Ank] Ankyrin repeat|[ZU5]|(1,2,3)[Ank_5] Ankyrin repeats (many copies)"; KO "K10380"; similar_genes "(1,2,3)ANK2_HUMAN(e-value:2.3e-167;bit-score:585.0)(4,5)ANK3_HUMAN(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 444098 444205 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 447448 447549 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 447737 447835 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 447921 448311 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 448500 448696 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 448808 448906 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 449101 449595 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 449842 450237 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 450400 450597 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 450681 450779 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 450855 450953 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 451235 451333 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 451569 451752 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 456024 456390 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 456630 456788 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 457819 458043 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 458198 458358 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 458449 458868 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 459013 459317 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 459439 459714 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 459861 460360 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 460443 460519 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 460607 460828 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 460987 461436 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 461505 461663 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 476933 478477 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 478836 478901 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild exon 478971 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.3"; Scaffold004 rebuild transcript 451713 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; gene_name "ANK"; annotation "(1,2,3)Ankyrin-2(4,5)putative Ankyrin-3"; Pfam "(1,2,3)[Ank_4] Ankyrin repeats (many copies)|[Death]|(1,2,3)[Ank_2] Ankyrin repeats (3 copies)|(1,2,3)[Ank_3] Ankyrin repeat|(1,2,3)[Ank] Ankyrin repeat|[ZU5]|(1,2,3)[Ank_5] Ankyrin repeats (many copies)"; KO "K10380"; similar_genes "(1,2,3)ANK2_HUMAN(e-value:2.3e-167;bit-score:585.0)(4,5)ANK3_HUMAN(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 451713 451752 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 452173 455739 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 456024 456390 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 456630 456788 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 457819 458043 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 458198 458358 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 458449 458868 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 459013 459317 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 459439 459714 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 459861 460360 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 460443 460519 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 460607 460828 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 460987 461436 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 461505 461663 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 465599 465859 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 478836 478901 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild exon 478971 479059 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.4"; Scaffold004 rebuild transcript 451713 465092 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; gene_name "ANK"; annotation "(1,2,3)Ankyrin-2(4,5)putative Ankyrin-3"; Pfam "(1,2,3)[Ank_4] Ankyrin repeats (many copies)|[Death]|(1,2,3)[Ank_2] Ankyrin repeats (3 copies)|(1,2,3)[Ank_3] Ankyrin repeat|(1,2,3)[Ank] Ankyrin repeat|[ZU5]|(1,2,3)[Ank_5] Ankyrin repeats (many copies)"; KO "K10380"; similar_genes "(1,2,3)ANK2_HUMAN(e-value:2.3e-167;bit-score:585.0)(4,5)ANK3_HUMAN(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 451713 451752 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 452173 455739 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 456024 456390 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 456630 456788 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 457819 458043 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 458198 458358 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 458449 458868 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 459013 459317 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 459439 459714 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 459861 460360 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 460443 460519 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 460607 460828 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 460987 461436 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 461505 461663 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 464656 464867 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild exon 464934 465092 . + . gene_id "RvY_08508"; transcript_id "RvY_08508.5"; Scaffold004 rebuild transcript 464625 464801 . - . gene_id "RvY_08509"; transcript_id "RvY_08509.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 464625 464801 . - . gene_id "RvY_08509"; transcript_id "RvY_08509.1"; Scaffold004 rebuild transcript 479634 482829 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; gene_name "ZCCHC8"; annotation "zinc finger CCHC domain-containing protein 8"; Pfam "[PSP]"; KO "K13128"; Scaffold004 rebuild exon 479634 480116 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 480169 480249 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 480491 480561 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 480661 480833 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 480908 480991 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 481214 481539 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 481646 481751 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 481855 481911 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 481984 482110 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild exon 482178 482829 . - . gene_id "RvY_08510"; transcript_id "RvY_08510.1"; Scaffold004 rebuild transcript 483486 485736 . + . gene_id "RvY_08511"; transcript_id "RvY_08511.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 483486 484159 . + . gene_id "RvY_08511"; transcript_id "RvY_08511.1"; Scaffold004 rebuild exon 484259 484493 . + . gene_id "RvY_08511"; transcript_id "RvY_08511.1"; Scaffold004 rebuild exon 484722 485239 . + . gene_id "RvY_08511"; transcript_id "RvY_08511.1"; Scaffold004 rebuild exon 485505 485736 . + . gene_id "RvY_08511"; transcript_id "RvY_08511.1"; Scaffold004 rebuild transcript 487221 490536 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; gene_name "3a01204"; annotation "(1)Protein white(2)putative Protein white"; Pfam "(1)[ABC2_membrane] ABC-2 type transporter|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; similar_genes "(1)WHITE_DROME(e-value:5.9e-60;bit-score:228.0)(2)WHITE_LUCCU(e-value:2.0e-41;bit-score:167.0)"; Scaffold004 rebuild exon 487221 487344 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 487413 487515 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 487848 487993 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 488098 488143 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 488229 488325 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 488525 488951 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 489241 489704 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 489772 490167 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild exon 490294 490536 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.1"; Scaffold004 rebuild transcript 487221 489046 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; gene_name "3a01204"; annotation "(1)Protein white(2)putative Protein white"; Pfam "(1)[ABC2_membrane] ABC-2 type transporter|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; similar_genes "(1)WHITE_DROME(e-value:5.9e-60;bit-score:228.0)(2)WHITE_LUCCU(e-value:2.0e-41;bit-score:167.0)"; Scaffold004 rebuild exon 487221 487344 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; Scaffold004 rebuild exon 487413 487515 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; Scaffold004 rebuild exon 487848 487993 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; Scaffold004 rebuild exon 488098 488143 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; Scaffold004 rebuild exon 488229 488325 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; Scaffold004 rebuild exon 488525 489046 . + . gene_id "RvY_08512"; transcript_id "RvY_08512.2"; Scaffold004 rebuild transcript 493503 496815 . + . gene_id "RvY_08513"; transcript_id "RvY_08513.1"; gene_name "GCS1"; annotation "putative Mannosyl-oligosaccharide glucosidase"; Pfam "[Glyco_hydro_63] Mannosyl oligosaccharide glucosidase"; EC "EC3.2.1.106"; KO "K01228"; similar_genes "MOGS_HUMAN(e-value:3.2e-33;bit-score:139.0)"; Scaffold004 rebuild exon 493503 494107 . + . gene_id "RvY_08513"; transcript_id "RvY_08513.1"; Scaffold004 rebuild exon 494344 495208 . + . gene_id "RvY_08513"; transcript_id "RvY_08513.1"; Scaffold004 rebuild exon 495396 495832 . + . gene_id "RvY_08513"; transcript_id "RvY_08513.1"; Scaffold004 rebuild exon 495909 496309 . + . gene_id "RvY_08513"; transcript_id "RvY_08513.1"; Scaffold004 rebuild exon 496562 496815 . + . gene_id "RvY_08513"; transcript_id "RvY_08513.1"; Scaffold004 rebuild transcript 497336 497850 . + . gene_id "RvY_08514"; transcript_id "RvY_08514.1"; annotation "hypothetical protein."; Pfam "[VMA21] VMA21-like domain"; Scaffold004 rebuild exon 497336 497421 . + . gene_id "RvY_08514"; transcript_id "RvY_08514.1"; Scaffold004 rebuild exon 497491 497606 . + . gene_id "RvY_08514"; transcript_id "RvY_08514.1"; Scaffold004 rebuild exon 497702 497850 . + . gene_id "RvY_08514"; transcript_id "RvY_08514.1"; Scaffold004 rebuild transcript 498445 499083 . + . gene_id "RvY_08515"; transcript_id "RvY_08515.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 498445 498528 . + . gene_id "RvY_08515"; transcript_id "RvY_08515.1"; Scaffold004 rebuild exon 498641 498811 . + . gene_id "RvY_08515"; transcript_id "RvY_08515.1"; Scaffold004 rebuild exon 498985 499083 . + . gene_id "RvY_08515"; transcript_id "RvY_08515.1"; Scaffold004 rebuild transcript 499358 503880 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; annotation "hypothetical protein."; Pfam "[AMOP]|[VWD] von Willebrand factor type D domain|[Sushi] Sushi domain (SCR repeat)|[NIDO] Nidogen-like"; similar_genes "MUC4_MOUSE(e-value:2.2e-06;bit-score:50.0)"; Scaffold004 rebuild exon 499358 499456 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 499566 499674 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 499783 499956 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 500507 500761 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 500840 502084 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 502209 502337 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 502425 502580 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 502652 502780 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 502857 502979 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 503054 503308 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild exon 503441 503880 . + . gene_id "RvY_08516"; transcript_id "RvY_08516.1"; Scaffold004 rebuild transcript 504344 506098 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; gene_name "PPP2C"; annotation "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; KO "K04382"; similar_genes "PP2AA_BOVIN(e-value:1.3e-176;bit-score:616.0)"; Scaffold004 rebuild exon 504344 504535 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; Scaffold004 rebuild exon 504858 505109 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; Scaffold004 rebuild exon 505205 505315 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; Scaffold004 rebuild exon 505485 505547 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; Scaffold004 rebuild exon 505631 505840 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; Scaffold004 rebuild exon 505997 506098 . - . gene_id "RvY_08517"; transcript_id "RvY_08517.1"; Scaffold004 rebuild transcript 507053 508737 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; gene_name "WD40"; annotation "Guanine nucleotide-binding protein subunit beta-2-like 1"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14753"; similar_genes "GBLP_BIOGL(e-value:5.1e-112;bit-score:401.0)"; Scaffold004 rebuild exon 507053 507176 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; Scaffold004 rebuild exon 507235 507415 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; Scaffold004 rebuild exon 507525 507768 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; Scaffold004 rebuild exon 507830 507940 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; Scaffold004 rebuild exon 508158 508298 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; Scaffold004 rebuild exon 508531 508737 . + . gene_id "RvY_08518"; transcript_id "RvY_08518.1"; Scaffold004 rebuild transcript 509513 510301 . - . gene_id "RvY_08519"; transcript_id "RvY_08519.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 509513 509799 . - . gene_id "RvY_08519"; transcript_id "RvY_08519.1"; Scaffold004 rebuild exon 510163 510301 . - . gene_id "RvY_08519"; transcript_id "RvY_08519.1"; Scaffold004 rebuild transcript 509290 509592 . - . gene_id "RvY_08519"; transcript_id "RvY_08519.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 509290 509592 . - . gene_id "RvY_08519"; transcript_id "RvY_08519.2"; Scaffold004 rebuild transcript 514513 518108 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold004 rebuild exon 514513 514709 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 514982 515405 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 515824 516060 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 516156 516326 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 516403 516450 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 516531 516833 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 516903 517100 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 517176 517240 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 517298 517808 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 517884 517942 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild exon 518027 518108 . + . gene_id "RvY_08520"; transcript_id "RvY_08520.1"; Scaffold004 rebuild transcript 523864 529976 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 523864 523935 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 524006 524080 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 524166 524270 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 524355 524459 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 524543 524869 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 525093 525566 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 525650 526123 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 526418 526891 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 527149 527715 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 527958 528221 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 528350 529291 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 529547 529702 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild exon 529767 529976 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.1"; Scaffold004 rebuild transcript 523864 529976 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 523864 523935 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 524024 524080 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 524166 524270 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 524355 524459 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 524543 524869 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 525093 525566 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 525650 526123 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 526418 526891 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 527149 527715 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 527958 528221 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 528350 529291 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 529547 529702 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild exon 529767 529976 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.2"; Scaffold004 rebuild transcript 523864 528290 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 523864 523935 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 524006 524080 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 524166 524270 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 524355 524459 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 524543 524869 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 525093 525566 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 525650 526123 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 526418 526891 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 527149 527715 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild exon 527958 528290 . + . gene_id "RvY_08521"; transcript_id "RvY_08521.3"; Scaffold004 rebuild transcript 532466 533101 . + . gene_id "RvY_08522"; transcript_id "RvY_08522.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 532466 533101 . + . gene_id "RvY_08522"; transcript_id "RvY_08522.1"; Scaffold004 rebuild transcript 533463 536181 . - . gene_id "RvY_08523"; transcript_id "RvY_08523.1"; gene_name "POMT"; annotation "putative Protein O-mannosyl-transferase 2"; Pfam "[PMT] Dolichyl-phosphate-mannose-protein mannosyltransferase|[MIR]"; CDD "Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]"; EC "EC2.4.1.109"; KO "K00728"; similar_genes "POMT2_DROME(e-value:9.8e-39;bit-score:158.0)"; Scaffold004 rebuild exon 533463 534398 . - . gene_id "RvY_08523"; transcript_id "RvY_08523.1"; Scaffold004 rebuild exon 534587 535343 . - . gene_id "RvY_08523"; transcript_id "RvY_08523.1"; Scaffold004 rebuild exon 535604 536181 . - . gene_id "RvY_08523"; transcript_id "RvY_08523.1"; Scaffold004 rebuild transcript 536820 537591 . + . gene_id "RvY_08524"; transcript_id "RvY_08524.1"; gene_name "Orai-1"; annotation "hypothetical protein."; Pfam "[Orai-1] Mediator of CRAC channel activity"; CDD "Mediator of CRAC channel activity. ORAI-1 is a protein homologue of Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co- expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1- related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins."; similar_genes "CRCM1_DROME(e-value:3.7e-17;bit-score:86.0)"; Scaffold004 rebuild exon 536820 536939 . + . gene_id "RvY_08524"; transcript_id "RvY_08524.1"; Scaffold004 rebuild exon 537115 537591 . + . gene_id "RvY_08524"; transcript_id "RvY_08524.1"; Scaffold004 rebuild transcript 537960 538657 . - . gene_id "RvY_08525"; transcript_id "RvY_08525.1"; gene_name "RP-S13e"; annotation "40S ribosomal protein S13"; Pfam "[Ribosomal_S13_N] Ribosomal S13/S15 N-terminal domain|[Ribosomal_S15] Ribosomal protein S15"; CDD "40S ribosomal protein S13; Provisional"; KO "K02953"; similar_genes "RS13_XENLA(e-value:7.2e-52;bit-score:201.0)"; Scaffold004 rebuild exon 537960 537993 . - . gene_id "RvY_08525"; transcript_id "RvY_08525.1"; Scaffold004 rebuild exon 538196 538296 . - . gene_id "RvY_08525"; transcript_id "RvY_08525.1"; Scaffold004 rebuild exon 538361 538530 . - . gene_id "RvY_08525"; transcript_id "RvY_08525.1"; Scaffold004 rebuild exon 538615 538657 . - . gene_id "RvY_08525"; transcript_id "RvY_08525.1"; Scaffold004 rebuild transcript 539361 539765 . + . gene_id "RvY_08526"; transcript_id "RvY_08526.1"; annotation "hypothetical protein."; Pfam "[HIG_1_N] Hypoxia induced protein conserved region"; Scaffold004 rebuild exon 539361 539765 . + . gene_id "RvY_08526"; transcript_id "RvY_08526.1"; Scaffold004 rebuild transcript 539719 540216 . + . gene_id "RvY_08526"; transcript_id "RvY_08526.2"; annotation "hypothetical protein."; Pfam "[HIG_1_N] Hypoxia induced protein conserved region"; Scaffold004 rebuild exon 539719 539896 . + . gene_id "RvY_08526"; transcript_id "RvY_08526.2"; Scaffold004 rebuild exon 540029 540216 . + . gene_id "RvY_08526"; transcript_id "RvY_08526.2"; Scaffold004 rebuild transcript 542695 543051 . - . gene_id "RvY_08527"; transcript_id "RvY_08527.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold004 rebuild exon 542695 543051 . - . gene_id "RvY_08527"; transcript_id "RvY_08527.1"; Scaffold004 rebuild transcript 543263 543712 . - . gene_id "RvY_08528"; transcript_id "RvY_08528.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 543263 543712 . - . gene_id "RvY_08528"; transcript_id "RvY_08528.1"; Scaffold004 rebuild transcript 544046 545552 . + . gene_id "RvY_08529"; transcript_id "RvY_08529.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 544046 544114 . + . gene_id "RvY_08529"; transcript_id "RvY_08529.1"; Scaffold004 rebuild exon 545403 545552 . + . gene_id "RvY_08529"; transcript_id "RvY_08529.1"; Scaffold004 rebuild transcript 546142 548073 . - . gene_id "RvY_08530"; transcript_id "RvY_08530.1"; gene_name "ERCC8"; annotation "DNA excision repair protein ERCC-8"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K10570"; Scaffold004 rebuild exon 546142 546414 . - . gene_id "RvY_08530"; transcript_id "RvY_08530.1"; Scaffold004 rebuild exon 546751 547235 . - . gene_id "RvY_08530"; transcript_id "RvY_08530.1"; Scaffold004 rebuild exon 547306 547511 . - . gene_id "RvY_08530"; transcript_id "RvY_08530.1"; Scaffold004 rebuild exon 547694 547795 . - . gene_id "RvY_08530"; transcript_id "RvY_08530.1"; Scaffold004 rebuild exon 547859 548073 . - . gene_id "RvY_08530"; transcript_id "RvY_08530.1"; Scaffold004 rebuild transcript 548410 549714 . - . gene_id "RvY_08531"; transcript_id "RvY_08531.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 548410 548458 . - . gene_id "RvY_08531"; transcript_id "RvY_08531.1"; Scaffold004 rebuild exon 548735 548831 . - . gene_id "RvY_08531"; transcript_id "RvY_08531.1"; Scaffold004 rebuild exon 548891 549026 . - . gene_id "RvY_08531"; transcript_id "RvY_08531.1"; Scaffold004 rebuild exon 549088 549312 . - . gene_id "RvY_08531"; transcript_id "RvY_08531.1"; Scaffold004 rebuild exon 549640 549714 . - . gene_id "RvY_08531"; transcript_id "RvY_08531.1"; Scaffold004 rebuild transcript 550446 550858 . - . gene_id "RvY_08532"; transcript_id "RvY_08532.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 550446 550513 . - . gene_id "RvY_08532"; transcript_id "RvY_08532.1"; Scaffold004 rebuild exon 550585 550858 . - . gene_id "RvY_08532"; transcript_id "RvY_08532.1"; Scaffold004 rebuild transcript 551638 555688 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; annotation "putative Testis-expressed sequence 2 protein"; Pfam "[DUF2404] Putative integral membrane protein conserved region (DUF2404)"; similar_genes "TEX2_HUMAN(e-value:2.1e-32;bit-score:137.0)"; Scaffold004 rebuild exon 551638 551736 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 551816 551912 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 552153 552568 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 552763 552920 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 552983 553468 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 553810 554213 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 554428 554560 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 554661 554839 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 554897 555111 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild exon 555203 555688 . - . gene_id "RvY_08533"; transcript_id "RvY_08533.1"; Scaffold004 rebuild transcript 557056 559169 . + . gene_id "RvY_08534"; transcript_id "RvY_08534.1"; gene_name "ALG8"; annotation "putative Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase"; Pfam "[Alg6_Alg8] ALG6, ALG8 glycosyltransferase family"; CDD "ALG6, ALG8 glycosyltransferase family. N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one. In the human alg6 gene, a C->T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147."; EC "EC2.4.1.-"; KO "K03849"; similar_genes "ALG8_MOUSE(e-value:2.9e-38;bit-score:156.0)"; Scaffold004 rebuild exon 557056 557061 . + . gene_id "RvY_08534"; transcript_id "RvY_08534.1"; Scaffold004 rebuild exon 557115 557238 . + . gene_id "RvY_08534"; transcript_id "RvY_08534.1"; Scaffold004 rebuild exon 557296 557533 . + . gene_id "RvY_08534"; transcript_id "RvY_08534.1"; Scaffold004 rebuild exon 557657 559169 . + . gene_id "RvY_08534"; transcript_id "RvY_08534.1"; Scaffold004 rebuild transcript 559269 560457 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 559269 559368 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.1"; Scaffold004 rebuild exon 559440 559660 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.1"; Scaffold004 rebuild exon 560386 560457 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.1"; Scaffold004 rebuild transcript 559269 559763 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 559269 559368 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.2"; Scaffold004 rebuild exon 559440 559660 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.2"; Scaffold004 rebuild exon 559728 559763 . - . gene_id "RvY_08535"; transcript_id "RvY_08535.2"; Scaffold004 rebuild transcript 560691 561780 . - . gene_id "RvY_08536"; transcript_id "RvY_08536.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 560691 560828 . - . gene_id "RvY_08536"; transcript_id "RvY_08536.1"; Scaffold004 rebuild exon 561499 561780 . - . gene_id "RvY_08536"; transcript_id "RvY_08536.1"; Scaffold004 rebuild transcript 562767 564729 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; gene_name "K01634"; annotation "putative Sphingosine-1-phosphate lyase"; Pfam "[Pyridoxal_deC] Pyridoxal-dependent decarboxylase conserved domain|[Aminotran_5] Aminotransferase class-V"; CDD "DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is Scaffold004 rebuild exon 562767 563138 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; Scaffold004 rebuild exon 563204 563452 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; Scaffold004 rebuild exon 563517 563871 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; Scaffold004 rebuild exon 563945 564033 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; Scaffold004 rebuild exon 564093 564295 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; Scaffold004 rebuild exon 564378 564729 . - . gene_id "RvY_08537"; transcript_id "RvY_08537.1"; Scaffold004 rebuild transcript 565448 566191 . + . gene_id "RvY_08538"; transcript_id "RvY_08538.1"; annotation "hypothetical protein."; Pfam "[zf-CCHC_3] Zinc knuckle"; Scaffold004 rebuild exon 565448 565506 . + . gene_id "RvY_08538"; transcript_id "RvY_08538.1"; Scaffold004 rebuild exon 565600 565646 . + . gene_id "RvY_08538"; transcript_id "RvY_08538.1"; Scaffold004 rebuild exon 565717 565831 . + . gene_id "RvY_08538"; transcript_id "RvY_08538.1"; Scaffold004 rebuild exon 565900 566191 . + . gene_id "RvY_08538"; transcript_id "RvY_08538.1"; Scaffold004 rebuild transcript 567793 572918 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; gene_name "PCSK5"; annotation "Endoprotease bli-4"; Pfam "[Peptidase_S8] Subtilase family|[P_proprotein] Proprotein convertase P-domain"; EC "EC3.4.21.-"; KO "K08654"; similar_genes "BLI4_CAEEL(e-value:1.9e-103;bit-score:373.0)"; Scaffold004 rebuild exon 567793 567969 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 568118 568222 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 568306 568491 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 568589 568723 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 569160 569319 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 569432 569604 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 570026 570467 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 570559 570676 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 570901 571287 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 571604 571986 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild exon 572452 572918 . + . gene_id "RvY_08539"; transcript_id "RvY_08539.1"; Scaffold004 rebuild transcript 573356 574964 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family"; similar_genes "BAT5_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold004 rebuild exon 573356 573667 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.1"; Scaffold004 rebuild exon 573733 574084 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.1"; Scaffold004 rebuild exon 574284 574661 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.1"; Scaffold004 rebuild exon 574720 574964 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.1"; Scaffold004 rebuild transcript 573356 574089 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.2"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family"; similar_genes "BAT5_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold004 rebuild exon 573356 573667 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.2"; Scaffold004 rebuild exon 573733 574089 . + . gene_id "RvY_08540"; transcript_id "RvY_08540.2"; Scaffold004 rebuild transcript 577441 578445 . + . gene_id "RvY_08541"; transcript_id "RvY_08541.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 577441 578445 . + . gene_id "RvY_08541"; transcript_id "RvY_08541.1"; Scaffold004 rebuild transcript 581363 582598 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 581363 581928 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.1"; Scaffold004 rebuild exon 582011 582225 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.1"; Scaffold004 rebuild exon 582303 582598 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.1"; Scaffold004 rebuild transcript 581363 582254 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 581363 581928 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.2"; Scaffold004 rebuild exon 582011 582254 . + . gene_id "RvY_08542"; transcript_id "RvY_08542.2"; Scaffold004 rebuild transcript 582672 585235 . + . gene_id "RvY_08543"; transcript_id "RvY_08543.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 582672 583424 . + . gene_id "RvY_08543"; transcript_id "RvY_08543.1"; Scaffold004 rebuild exon 583506 583866 . + . gene_id "RvY_08543"; transcript_id "RvY_08543.1"; Scaffold004 rebuild exon 583933 584183 . + . gene_id "RvY_08543"; transcript_id "RvY_08543.1"; Scaffold004 rebuild exon 584250 584670 . + . gene_id "RvY_08543"; transcript_id "RvY_08543.1"; Scaffold004 rebuild exon 584751 585235 . + . gene_id "RvY_08543"; transcript_id "RvY_08543.1"; Scaffold004 rebuild transcript 586350 586964 . + . gene_id "RvY_08544"; transcript_id "RvY_08544.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 586350 586964 . + . gene_id "RvY_08544"; transcript_id "RvY_08544.1"; Scaffold004 rebuild transcript 586605 586973 . - . gene_id "RvY_08545"; transcript_id "RvY_08545.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 586605 586973 . - . gene_id "RvY_08545"; transcript_id "RvY_08545.1"; Scaffold004 rebuild transcript 587688 589574 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold004 rebuild exon 587688 587852 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; Scaffold004 rebuild exon 587915 588072 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; Scaffold004 rebuild exon 588140 588354 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; Scaffold004 rebuild exon 588449 588496 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; Scaffold004 rebuild exon 588574 588665 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; Scaffold004 rebuild exon 588750 589574 . - . gene_id "RvY_08546"; transcript_id "RvY_08546.1"; Scaffold004 rebuild transcript 590502 591509 . - . gene_id "RvY_08547"; transcript_id "RvY_08547.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 590502 591509 . - . gene_id "RvY_08547"; transcript_id "RvY_08547.1"; Scaffold004 rebuild transcript 592216 594642 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 592216 592250 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.1"; Scaffold004 rebuild exon 592403 592727 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.1"; Scaffold004 rebuild exon 592801 594642 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.1"; Scaffold004 rebuild transcript 592206 594642 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 592206 592250 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.2"; Scaffold004 rebuild exon 592403 592497 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.2"; Scaffold004 rebuild exon 592568 592601 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.2"; Scaffold004 rebuild exon 592671 592727 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.2"; Scaffold004 rebuild exon 592801 594642 . - . gene_id "RvY_08548"; transcript_id "RvY_08548.2"; Scaffold004 rebuild transcript 595072 595623 . - . gene_id "RvY_08549"; transcript_id "RvY_08549.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 595072 595124 . - . gene_id "RvY_08549"; transcript_id "RvY_08549.1"; Scaffold004 rebuild exon 595194 595623 . - . gene_id "RvY_08549"; transcript_id "RvY_08549.1"; Scaffold004 rebuild transcript 596385 597658 . + . gene_id "RvY_08550"; transcript_id "RvY_08550.1"; annotation "putative TM2 domain-containing protein 3"; Pfam "[TM2]"; similar_genes "TM2D3_HUMAN(e-value:6.3e-34;bit-score:142.0)"; Scaffold004 rebuild exon 596385 596535 . + . gene_id "RvY_08550"; transcript_id "RvY_08550.1"; Scaffold004 rebuild exon 596672 596994 . + . gene_id "RvY_08550"; transcript_id "RvY_08550.1"; Scaffold004 rebuild exon 597072 597231 . + . gene_id "RvY_08550"; transcript_id "RvY_08550.1"; Scaffold004 rebuild exon 597411 597658 . + . gene_id "RvY_08550"; transcript_id "RvY_08550.1"; Scaffold004 rebuild transcript 597991 601160 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; gene_name "metK"; annotation "Probable S-adenosylmethionine synthetase 3"; Pfam "[S-AdoMet_synt_M] S-adenosylmethionine synthetase, central domain|[S-AdoMet_synt_C] S-adenosylmethionine synthetase, C-terminal domain|[S-AdoMet_synt_N] S-adenosylmethionine synthetase, N-terminal domain"; CDD "S-adenosylmethionine synthetase; Provisional"; EC "EC2.5.1.6"; KO "K00789"; similar_genes "METK3_CAEEL(e-value:2.4e-86;bit-score:316.0)"; Scaffold004 rebuild exon 597991 598099 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild exon 599004 599320 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild exon 599594 599812 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild exon 599872 600128 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild exon 600401 600523 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild exon 600594 600671 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild exon 601064 601160 . - . gene_id "RvY_08551"; transcript_id "RvY_08551.1"; Scaffold004 rebuild transcript 603372 605057 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 603372 603816 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.1"; Scaffold004 rebuild exon 604831 605057 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.1"; Scaffold004 rebuild transcript 603372 603923 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 603372 603923 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.2"; Scaffold004 rebuild transcript 603372 605242 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 603372 603816 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.3"; Scaffold004 rebuild exon 605223 605242 . + . gene_id "RvY_08552"; transcript_id "RvY_08552.3"; Scaffold004 rebuild transcript 605520 605927 . + . gene_id "RvY_08553"; transcript_id "RvY_08553.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 605520 605927 . + . gene_id "RvY_08553"; transcript_id "RvY_08553.1"; Scaffold004 rebuild transcript 605520 606121 . + . gene_id "RvY_08553"; transcript_id "RvY_08553.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 605520 605855 . + . gene_id "RvY_08553"; transcript_id "RvY_08553.2"; Scaffold004 rebuild exon 606089 606121 . + . gene_id "RvY_08553"; transcript_id "RvY_08553.2"; Scaffold004 rebuild transcript 606782 607762 . - . gene_id "RvY_08554"; transcript_id "RvY_08554.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold004 rebuild exon 606782 607362 . - . gene_id "RvY_08554"; transcript_id "RvY_08554.1"; Scaffold004 rebuild exon 607525 607762 . - . gene_id "RvY_08554"; transcript_id "RvY_08554.1"; Scaffold004 framed transcript 610495 611046 . - . gene_id "RvY_08555"; transcript_id "RvY_08555.1"; annotation "hypothetical protein."; Scaffold004 framed exon 610495 611046 . - . gene_id "RvY_08555"; transcript_id "RvY_08555.1"; Scaffold004 rebuild transcript 610636 611046 . - . gene_id "RvY_08555"; transcript_id "RvY_08555.4"; annotation "hypothetical protein."; Scaffold004 rebuild exon 610636 611046 . - . gene_id "RvY_08555"; transcript_id "RvY_08555.4"; Scaffold004 rebuild transcript 610639 611046 . - . gene_id "RvY_08555"; transcript_id "RvY_08555.5"; annotation "hypothetical protein."; Scaffold004 rebuild exon 610639 611046 . - . gene_id "RvY_08555"; transcript_id "RvY_08555.5"; Scaffold004 rebuild transcript 610718 611498 . + . gene_id "RvY_08556"; transcript_id "RvY_08556.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 610718 610795 . + . gene_id "RvY_08556"; transcript_id "RvY_08556.1"; Scaffold004 rebuild exon 610818 611005 . + . gene_id "RvY_08556"; transcript_id "RvY_08556.1"; Scaffold004 rebuild exon 611366 611498 . + . gene_id "RvY_08556"; transcript_id "RvY_08556.1"; Scaffold004 rebuild transcript 614740 615402 . - . gene_id "RvY_08557"; transcript_id "RvY_08557.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 614740 615402 . - . gene_id "RvY_08557"; transcript_id "RvY_08557.1"; Scaffold004 rebuild transcript 615739 615978 . - . gene_id "RvY_08558"; transcript_id "RvY_08558.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold004 rebuild exon 615739 615978 . - . gene_id "RvY_08558"; transcript_id "RvY_08558.1"; Scaffold004 rebuild transcript 616481 618467 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; gene_name "K08707"; annotation "nuclear receptor, other families, vertebrate"; KO "K08707"; Scaffold004 rebuild exon 616481 616657 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild exon 616713 617051 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild exon 617143 617203 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild exon 617285 617398 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild exon 617471 617802 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild exon 618008 618238 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild exon 618312 618467 . - . gene_id "RvY_08559"; transcript_id "RvY_08559.1"; Scaffold004 rebuild transcript 618889 620466 . + . gene_id "RvY_08560"; transcript_id "RvY_08560.1"; annotation "hypothetical protein."; Pfam "[TraB] TraB family"; Scaffold004 rebuild exon 618889 619149 . + . gene_id "RvY_08560"; transcript_id "RvY_08560.1"; Scaffold004 rebuild exon 619326 619596 . + . gene_id "RvY_08560"; transcript_id "RvY_08560.1"; Scaffold004 rebuild exon 619658 620013 . + . gene_id "RvY_08560"; transcript_id "RvY_08560.1"; Scaffold004 rebuild exon 620188 620466 . + . gene_id "RvY_08560"; transcript_id "RvY_08560.1"; Scaffold004 rebuild transcript 620607 621840 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.1"; annotation "rRNA methyltransferase 1 homolog"; Pfam "[FtsJ] FtsJ-like methyltransferase"; EC "EC2.1.1.-"; KO "K14864"; similar_genes "RRMJ1_DICDI(e-value:7.6e-58;bit-score:221.0)"; Scaffold004 rebuild exon 620607 620967 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.1"; Scaffold004 rebuild exon 621093 621676 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.1"; Scaffold004 rebuild exon 621811 621840 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.1"; Scaffold004 rebuild transcript 620607 621834 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.2"; annotation "rRNA methyltransferase 1 homolog"; Pfam "[FtsJ] FtsJ-like methyltransferase"; EC "EC2.1.1.-"; KO "K14864"; similar_genes "RRMJ1_DICDI(e-value:7.6e-58;bit-score:221.0)"; Scaffold004 rebuild exon 620607 620967 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.2"; Scaffold004 rebuild exon 621093 621676 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.2"; Scaffold004 rebuild exon 621811 621834 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.2"; Scaffold004 rebuild transcript 620607 621831 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.3"; annotation "rRNA methyltransferase 1 homolog"; Pfam "[FtsJ] FtsJ-like methyltransferase"; EC "EC2.1.1.-"; KO "K14864"; similar_genes "RRMJ1_DICDI(e-value:7.6e-58;bit-score:221.0)"; Scaffold004 rebuild exon 620607 620967 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.3"; Scaffold004 rebuild exon 621093 621676 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.3"; Scaffold004 rebuild exon 621811 621831 . - . gene_id "RvY_08561"; transcript_id "RvY_08561.3"; Scaffold004 rebuild transcript 622177 624174 . + . gene_id "RvY_08562"; transcript_id "RvY_08562.1"; gene_name "AIR1_2"; annotation "protein AIR1/2"; CDD "Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]"; KO "K12597"; Scaffold004 rebuild exon 622177 622429 . + . gene_id "RvY_08562"; transcript_id "RvY_08562.1"; Scaffold004 rebuild exon 622534 623274 . + . gene_id "RvY_08562"; transcript_id "RvY_08562.1"; Scaffold004 rebuild exon 623335 623417 . + . gene_id "RvY_08562"; transcript_id "RvY_08562.1"; Scaffold004 rebuild exon 623505 623801 . + . gene_id "RvY_08562"; transcript_id "RvY_08562.1"; Scaffold004 rebuild exon 623878 624174 . + . gene_id "RvY_08562"; transcript_id "RvY_08562.1"; Scaffold004 rebuild transcript 624777 624959 . + . gene_id "RvY_08563"; transcript_id "RvY_08563.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 624777 624959 . + . gene_id "RvY_08563"; transcript_id "RvY_08563.1"; Scaffold004 rebuild transcript 625376 625675 . - . gene_id "RvY_08564"; transcript_id "RvY_08564.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 625376 625675 . - . gene_id "RvY_08564"; transcript_id "RvY_08564.1"; Scaffold004 rebuild transcript 626433 633016 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; gene_name "LPHN2"; annotation "putative Latrophilin-2"; Pfam "[Lectin_C] Lectin C-type domain|[7tm_2] 7 transmembrane receptor (Secretin family)|[DUF3497]|[GPS] Latrophilin/CL-1-like GPS domain"; KO "K04593"; similar_genes "LPHN2_BOVIN(e-value:2.2e-36;bit-score:150.0)"; Scaffold004 rebuild exon 626433 626496 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 627560 627838 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 628548 628898 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 629086 630495 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 630673 631068 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 631214 631324 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 631432 631657 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 631730 632016 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 632085 632220 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 632296 632398 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild exon 632795 633016 . + . gene_id "RvY_08565"; transcript_id "RvY_08565.1"; Scaffold004 rebuild transcript 633156 634000 . + . gene_id "RvY_08566"; transcript_id "RvY_08566.1"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)"; Scaffold004 rebuild exon 633156 633365 . + . gene_id "RvY_08566"; transcript_id "RvY_08566.1"; Scaffold004 rebuild exon 633442 633618 . + . gene_id "RvY_08566"; transcript_id "RvY_08566.1"; Scaffold004 rebuild exon 633764 634000 . + . gene_id "RvY_08566"; transcript_id "RvY_08566.1"; Scaffold004 rebuild transcript 634282 636210 . - . gene_id "RvY_08567"; transcript_id "RvY_08567.1"; annotation "hypothetical protein."; Pfam "[Vps16_C] Vps16, C-terminal region|[Golgin_A5] Golgin subfamily A member 5"; Scaffold004 rebuild exon 634282 634521 . - . gene_id "RvY_08567"; transcript_id "RvY_08567.1"; Scaffold004 rebuild exon 634743 635239 . - . gene_id "RvY_08567"; transcript_id "RvY_08567.1"; Scaffold004 rebuild exon 635370 636210 . - . gene_id "RvY_08567"; transcript_id "RvY_08567.1"; Scaffold004 rebuild transcript 636413 637138 . - . gene_id "RvY_08568"; transcript_id "RvY_08568.1"; annotation "hypothetical protein."; Pfam "[Yae1_N] Essential protein Yae1, N terminal"; Scaffold004 rebuild exon 636413 636761 . - . gene_id "RvY_08568"; transcript_id "RvY_08568.1"; Scaffold004 rebuild exon 636845 636966 . - . gene_id "RvY_08568"; transcript_id "RvY_08568.1"; Scaffold004 rebuild exon 637040 637138 . - . gene_id "RvY_08568"; transcript_id "RvY_08568.1"; Scaffold004 rebuild transcript 639500 640818 . - . gene_id "RvY_08569"; transcript_id "RvY_08569.1"; gene_name "adk"; annotation "putative Adenylate kinase isoenzyme 1"; Pfam "[ADK] Adenylate kinase|[AAA_18] AAA domain|[AAA_17] AAA domain"; CDD "adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351."; EC "EC2.7.4.3"; KO "K00939"; similar_genes "KAD1_CHICK(e-value:1.1e-31;bit-score:134.0)"; Scaffold004 rebuild exon 639500 639772 . - . gene_id "RvY_08569"; transcript_id "RvY_08569.1"; Scaffold004 rebuild exon 639841 639957 . - . gene_id "RvY_08569"; transcript_id "RvY_08569.1"; Scaffold004 rebuild exon 640167 640330 . - . gene_id "RvY_08569"; transcript_id "RvY_08569.1"; Scaffold004 rebuild exon 640580 640646 . - . gene_id "RvY_08569"; transcript_id "RvY_08569.1"; Scaffold004 rebuild exon 640759 640818 . - . gene_id "RvY_08569"; transcript_id "RvY_08569.1"; Scaffold004 rebuild transcript 645306 645917 . - . gene_id "RvY_08570"; transcript_id "RvY_08570.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 645306 645917 . - . gene_id "RvY_08570"; transcript_id "RvY_08570.1"; Scaffold004 rebuild transcript 646043 647152 . - . gene_id "RvY_08571"; transcript_id "RvY_08571.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 646043 646283 . - . gene_id "RvY_08571"; transcript_id "RvY_08571.1"; Scaffold004 rebuild exon 646363 646610 . - . gene_id "RvY_08571"; transcript_id "RvY_08571.1"; Scaffold004 rebuild exon 646713 646957 . - . gene_id "RvY_08571"; transcript_id "RvY_08571.1"; Scaffold004 rebuild exon 647035 647152 . - . gene_id "RvY_08571"; transcript_id "RvY_08571.1"; Scaffold004 rebuild transcript 648967 650118 . + . gene_id "RvY_08572"; transcript_id "RvY_08572.1"; annotation "hypothetical protein."; Pfam "[Galactosyl_T] Galactosyltransferase"; Scaffold004 rebuild exon 648967 650118 . + . gene_id "RvY_08572"; transcript_id "RvY_08572.1"; Scaffold004 rebuild transcript 650852 652048 . - . gene_id "RvY_08573"; transcript_id "RvY_08573.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 650852 651052 . - . gene_id "RvY_08573"; transcript_id "RvY_08573.1"; Scaffold004 rebuild exon 651377 652048 . - . gene_id "RvY_08573"; transcript_id "RvY_08573.1"; Scaffold004 rebuild transcript 653824 655619 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; Scaffold004 rebuild exon 653824 654136 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.1"; Scaffold004 rebuild exon 654231 654515 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.1"; Scaffold004 rebuild exon 655195 655619 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.1"; Scaffold004 rebuild transcript 653824 655619 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.2"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; Scaffold004 rebuild exon 653824 654136 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.2"; Scaffold004 rebuild exon 654231 654482 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.2"; Scaffold004 rebuild exon 655195 655619 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.2"; Scaffold004 rebuild transcript 653824 654592 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.3"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; Scaffold004 rebuild exon 653824 654136 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.3"; Scaffold004 rebuild exon 654231 654592 . + . gene_id "RvY_08574"; transcript_id "RvY_08574.3"; Scaffold004 rebuild transcript 655833 657955 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region"; similar_genes "SPRC_XENLA(e-value:2.3e-08;bit-score:57.0)"; Scaffold004 rebuild exon 655833 655951 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild exon 656228 656376 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild exon 656439 656655 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild exon 656736 656874 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild exon 656948 657057 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild exon 657164 657392 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild exon 657890 657955 . - . gene_id "RvY_08575"; transcript_id "RvY_08575.1"; Scaffold004 rebuild transcript 659914 661806 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 659914 660398 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.1"; Scaffold004 rebuild exon 660492 660647 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.1"; Scaffold004 rebuild exon 660732 661100 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.1"; Scaffold004 rebuild exon 661167 661806 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.1"; Scaffold004 rebuild transcript 660217 661806 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 660217 660398 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.2"; Scaffold004 rebuild exon 660492 660647 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.2"; Scaffold004 rebuild exon 660732 661100 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.2"; Scaffold004 rebuild exon 661167 661806 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.2"; Scaffold004 rebuild transcript 660856 661806 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 660856 661100 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.3"; Scaffold004 rebuild exon 661167 661806 . + . gene_id "RvY_08576"; transcript_id "RvY_08576.3"; Scaffold004 rebuild transcript 661906 662079 . - . gene_id "RvY_08577"; transcript_id "RvY_08577.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 661906 662079 . - . gene_id "RvY_08577"; transcript_id "RvY_08577.1"; Scaffold004 rebuild transcript 662603 662780 . + . gene_id "RvY_08578"; transcript_id "RvY_08578.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 662603 662698 . + . gene_id "RvY_08578"; transcript_id "RvY_08578.1"; Scaffold004 rebuild exon 662739 662780 . + . gene_id "RvY_08578"; transcript_id "RvY_08578.1"; Scaffold004 rebuild transcript 663885 664694 . - . gene_id "RvY_08579"; transcript_id "RvY_08579.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 663885 664694 . - . gene_id "RvY_08579"; transcript_id "RvY_08579.1"; Scaffold004 rebuild transcript 664840 665688 . - . gene_id "RvY_08580"; transcript_id "RvY_08580.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 664840 665078 . - . gene_id "RvY_08580"; transcript_id "RvY_08580.1"; Scaffold004 rebuild exon 665146 665242 . - . gene_id "RvY_08580"; transcript_id "RvY_08580.1"; Scaffold004 rebuild exon 665323 665688 . - . gene_id "RvY_08580"; transcript_id "RvY_08580.1"; Scaffold004 rebuild transcript 665983 668183 . - . gene_id "RvY_08581"; transcript_id "RvY_08581.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 665983 666290 . - . gene_id "RvY_08581"; transcript_id "RvY_08581.1"; Scaffold004 rebuild exon 667898 668183 . - . gene_id "RvY_08581"; transcript_id "RvY_08581.1"; Scaffold004 rebuild transcript 669968 672001 . - . gene_id "RvY_08582"; transcript_id "RvY_08582.1"; gene_name "E2F_TDP"; annotation "hypothetical protein."; Pfam "[DP] Transcription factor DP|[E2F_TDP] E2F/DP family winged-helix DNA-binding domain"; CDD "E2F/DP family winged-helix DNA-binding domain. This family contains the transcription factor E2F and its dimerization partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins."; Scaffold004 rebuild exon 669968 670561 . - . gene_id "RvY_08582"; transcript_id "RvY_08582.1"; Scaffold004 rebuild exon 670737 671123 . - . gene_id "RvY_08582"; transcript_id "RvY_08582.1"; Scaffold004 rebuild exon 671320 671702 . - . gene_id "RvY_08582"; transcript_id "RvY_08582.1"; Scaffold004 rebuild exon 671785 672001 . - . gene_id "RvY_08582"; transcript_id "RvY_08582.1"; Scaffold004 rebuild transcript 672275 672457 . + . gene_id "RvY_08583"; transcript_id "RvY_08583.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 672275 672457 . + . gene_id "RvY_08583"; transcript_id "RvY_08583.1"; Scaffold004 rebuild transcript 672928 673269 . + . gene_id "RvY_08584"; transcript_id "RvY_08584.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 672928 673269 . + . gene_id "RvY_08584"; transcript_id "RvY_08584.1"; Scaffold004 rebuild transcript 674539 675129 . - . gene_id "RvY_08585"; transcript_id "RvY_08585.1"; annotation "hypothetical protein."; Pfam "[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold004 rebuild exon 674539 675129 . - . gene_id "RvY_08585"; transcript_id "RvY_08585.1"; Scaffold004 rebuild transcript 675228 675779 . - . gene_id "RvY_08586"; transcript_id "RvY_08586.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 675228 675779 . - . gene_id "RvY_08586"; transcript_id "RvY_08586.1"; Scaffold004 rebuild transcript 681398 684264 . - . gene_id "RvY_08587"; transcript_id "RvY_08587.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 681398 681534 . - . gene_id "RvY_08587"; transcript_id "RvY_08587.1"; Scaffold004 rebuild exon 684120 684264 . - . gene_id "RvY_08587"; transcript_id "RvY_08587.1"; Scaffold004 rebuild transcript 685465 688633 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; annotation "hypothetical protein."; Pfam "[Cullin] Cullin family|[Cullin_Nedd8] Cullin protein neddylation domain"; Scaffold004 rebuild exon 685465 685489 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 685750 686337 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 686539 687125 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 687237 687367 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 687474 687699 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 687764 688048 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 688216 688329 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild exon 688394 688633 . - . gene_id "RvY_08588"; transcript_id "RvY_08588.1"; Scaffold004 rebuild transcript 690407 691971 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; gene_name "KCNK1"; annotation "potassium channel, subfamily K, member 1"; Pfam "[Ion_trans_2] Ion channel"; KO "K04912"; Scaffold004 rebuild exon 690407 690540 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 690621 690670 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 690941 691057 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 691157 691208 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 691279 691385 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 691462 691514 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 691596 691678 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 691743 691774 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild exon 691874 691971 . + . gene_id "RvY_08589"; transcript_id "RvY_08589.1"; Scaffold004 rebuild transcript 695048 696405 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 695048 695083 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.1"; Scaffold004 rebuild exon 695151 695311 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.1"; Scaffold004 rebuild exon 695423 696109 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.1"; Scaffold004 rebuild exon 696174 696405 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.1"; Scaffold004 rebuild transcript 695048 696405 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 695048 695080 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.2"; Scaffold004 rebuild exon 695151 695311 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.2"; Scaffold004 rebuild exon 695423 696109 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.2"; Scaffold004 rebuild exon 696174 696405 . + . gene_id "RvY_08590"; transcript_id "RvY_08590.2"; Scaffold004 rebuild transcript 698746 699465 . + . gene_id "RvY_08591"; transcript_id "RvY_08591.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 698746 699465 . + . gene_id "RvY_08591"; transcript_id "RvY_08591.1"; Scaffold004 rebuild transcript 699653 700229 . - . gene_id "RvY_08592"; transcript_id "RvY_08592.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 699653 699799 . - . gene_id "RvY_08592"; transcript_id "RvY_08592.1"; Scaffold004 rebuild exon 699880 699998 . - . gene_id "RvY_08592"; transcript_id "RvY_08592.1"; Scaffold004 rebuild exon 700088 700229 . - . gene_id "RvY_08592"; transcript_id "RvY_08592.1"; Scaffold004 rebuild transcript 701118 701807 . + . gene_id "RvY_08593"; transcript_id "RvY_08593.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 701118 701120 . + . gene_id "RvY_08593"; transcript_id "RvY_08593.1"; Scaffold004 rebuild exon 701185 701329 . + . gene_id "RvY_08593"; transcript_id "RvY_08593.1"; Scaffold004 rebuild exon 701713 701807 . + . gene_id "RvY_08593"; transcript_id "RvY_08593.1"; Scaffold004 rebuild transcript 703521 704015 . + . gene_id "RvY_08594"; transcript_id "RvY_08594.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 703521 703685 . + . gene_id "RvY_08594"; transcript_id "RvY_08594.1"; Scaffold004 rebuild exon 703851 704015 . + . gene_id "RvY_08594"; transcript_id "RvY_08594.1"; Scaffold004 rebuild transcript 705937 717945 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; gene_name "RAPGEF2"; annotation "putative Rap guanine nucleotide exchange factor 2"; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[RasGEF_N] RasGEF N-terminal motif|[PDZ] PDZ domain (Also known as DHR or GLGF)|[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; KO "K08018"; similar_genes "RPGF2_HUMAN(e-value:4.5e-43;bit-score:172.0)"; Scaffold004 rebuild exon 705937 706358 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 706555 706966 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 707564 707888 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 708170 708403 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 708600 709027 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 709266 709626 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 709851 710301 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 710558 710780 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 711088 711252 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 711392 711620 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 711896 712041 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 712229 712423 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 712497 712721 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 713266 713463 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 714469 714553 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild exon 717890 717945 . - . gene_id "RvY_08595"; transcript_id "RvY_08595.1"; Scaffold004 rebuild transcript 715537 715857 . + . gene_id "RvY_08596"; transcript_id "RvY_08596.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 715537 715857 . + . gene_id "RvY_08596"; transcript_id "RvY_08596.1"; Scaffold004 rebuild transcript 718178 718327 . - . gene_id "RvY_08597"; transcript_id "RvY_08597.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 718178 718327 . - . gene_id "RvY_08597"; transcript_id "RvY_08597.1"; Scaffold004 rebuild transcript 718886 719143 . + . gene_id "RvY_08598"; transcript_id "RvY_08598.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 718886 719143 . + . gene_id "RvY_08598"; transcript_id "RvY_08598.1"; Scaffold004 rebuild transcript 719903 720235 . - . gene_id "RvY_08599"; transcript_id "RvY_08599.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 719903 720235 . - . gene_id "RvY_08599"; transcript_id "RvY_08599.1"; Scaffold004 rebuild transcript 720845 721592 . + . gene_id "RvY_08600"; transcript_id "RvY_08600.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 720845 720928 . + . gene_id "RvY_08600"; transcript_id "RvY_08600.1"; Scaffold004 rebuild exon 721446 721592 . + . gene_id "RvY_08600"; transcript_id "RvY_08600.1"; Scaffold004 rebuild transcript 724359 724838 . - . gene_id "RvY_08601"; transcript_id "RvY_08601.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 724359 724446 . - . gene_id "RvY_08601"; transcript_id "RvY_08601.1"; Scaffold004 rebuild exon 724546 724673 . - . gene_id "RvY_08601"; transcript_id "RvY_08601.1"; Scaffold004 rebuild exon 724779 724838 . - . gene_id "RvY_08601"; transcript_id "RvY_08601.1"; Scaffold004 rebuild transcript 725335 726713 . - . gene_id "RvY_08602"; transcript_id "RvY_08602.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 725335 725402 . - . gene_id "RvY_08602"; transcript_id "RvY_08602.1"; Scaffold004 rebuild exon 726318 726398 . - . gene_id "RvY_08602"; transcript_id "RvY_08602.1"; Scaffold004 rebuild exon 726518 726713 . - . gene_id "RvY_08602"; transcript_id "RvY_08602.1"; Scaffold004 rebuild transcript 726414 726713 . - . gene_id "RvY_08602"; transcript_id "RvY_08602.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 726414 726713 . - . gene_id "RvY_08602"; transcript_id "RvY_08602.2"; Scaffold004 rebuild transcript 726060 726260 . + . gene_id "RvY_08603"; transcript_id "RvY_08603.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 726060 726260 . + . gene_id "RvY_08603"; transcript_id "RvY_08603.1"; Scaffold004 rebuild transcript 730743 732401 . + . gene_id "RvY_08604"; transcript_id "RvY_08604.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 730743 730984 . + . gene_id "RvY_08604"; transcript_id "RvY_08604.1"; Scaffold004 rebuild exon 731081 731218 . + . gene_id "RvY_08604"; transcript_id "RvY_08604.1"; Scaffold004 rebuild exon 731314 731569 . + . gene_id "RvY_08604"; transcript_id "RvY_08604.1"; Scaffold004 rebuild exon 731898 732401 . + . gene_id "RvY_08604"; transcript_id "RvY_08604.1"; Scaffold004 rebuild transcript 732629 733245 . - . gene_id "RvY_08605"; transcript_id "RvY_08605.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 732629 732706 . - . gene_id "RvY_08605"; transcript_id "RvY_08605.1"; Scaffold004 rebuild exon 732802 733245 . - . gene_id "RvY_08605"; transcript_id "RvY_08605.1"; Scaffold004 rebuild transcript 734109 735634 . - . gene_id "RvY_08606"; transcript_id "RvY_08606.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin_2] Trypsin-like peptidase domain|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold004 rebuild exon 734109 734301 . - . gene_id "RvY_08606"; transcript_id "RvY_08606.1"; Scaffold004 rebuild exon 734390 734487 . - . gene_id "RvY_08606"; transcript_id "RvY_08606.1"; Scaffold004 rebuild exon 734577 735045 . - . gene_id "RvY_08606"; transcript_id "RvY_08606.1"; Scaffold004 rebuild exon 735132 735309 . - . gene_id "RvY_08606"; transcript_id "RvY_08606.1"; Scaffold004 rebuild exon 735421 735634 . - . gene_id "RvY_08606"; transcript_id "RvY_08606.1"; Scaffold004 rebuild transcript 736010 740425 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; annotation "hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "ANO5_HUMAN(e-value:1.1e-16;bit-score:85.0)"; Scaffold004 rebuild exon 736010 736189 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 736250 736355 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 736417 736610 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 736685 736890 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 736982 737222 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 737288 737342 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 737446 737663 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 737726 737913 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 737978 738005 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 738062 738205 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 738288 738431 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 738490 738535 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 738613 738875 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 738963 739072 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 739156 739268 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 739330 739463 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 739836 739875 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 739944 740014 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 740086 740283 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild exon 740345 740425 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.1"; Scaffold004 rebuild transcript 736010 739833 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; annotation "hypothetical protein."; Pfam "[Anoctamin] Calcium-activated chloride channel"; similar_genes "ANO5_HUMAN(e-value:1.1e-16;bit-score:85.0)"; Scaffold004 rebuild exon 736010 736189 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 736250 736355 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 736417 736610 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 736685 736890 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 736982 737222 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 737288 737342 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 737446 737663 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 737726 737913 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 737978 738005 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 738062 738205 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 738288 738431 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 738490 738535 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 738613 738875 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 738963 739072 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 739156 739268 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 739330 739491 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild exon 739781 739833 . - . gene_id "RvY_08607"; transcript_id "RvY_08607.2"; Scaffold004 rebuild transcript 741136 742714 . - . gene_id "RvY_08608"; transcript_id "RvY_08608.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 741136 741208 . - . gene_id "RvY_08608"; transcript_id "RvY_08608.1"; Scaffold004 rebuild exon 741276 741442 . - . gene_id "RvY_08608"; transcript_id "RvY_08608.1"; Scaffold004 rebuild exon 741506 741632 . - . gene_id "RvY_08608"; transcript_id "RvY_08608.1"; Scaffold004 rebuild exon 741738 742714 . - . gene_id "RvY_08608"; transcript_id "RvY_08608.1"; Scaffold004 rebuild transcript 742958 744071 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 742958 743199 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.1"; Scaffold004 rebuild exon 743289 743436 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.1"; Scaffold004 rebuild exon 743516 743911 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.1"; Scaffold004 rebuild exon 744021 744071 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.1"; Scaffold004 rebuild transcript 743176 744071 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 743176 743436 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.2"; Scaffold004 rebuild exon 743516 743911 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.2"; Scaffold004 rebuild exon 744021 744071 . - . gene_id "RvY_08609"; transcript_id "RvY_08609.2"; Scaffold004 rebuild transcript 744470 746769 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; gene_name "GH18_chitolectin_chitotriosidase"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold004 rebuild exon 744470 744781 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; Scaffold004 rebuild exon 744841 745161 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; Scaffold004 rebuild exon 745268 745364 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; Scaffold004 rebuild exon 745447 745562 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; Scaffold004 rebuild exon 745634 746043 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; Scaffold004 rebuild exon 746703 746769 . - . gene_id "RvY_08610"; transcript_id "RvY_08610.1"; Scaffold004 rebuild transcript 747232 750572 . + . gene_id "RvY_08611"; transcript_id "RvY_08611.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR3_HUMAN(e-value:3.5e-11;bit-score:66.0)"; Scaffold004 rebuild exon 747232 749158 . + . gene_id "RvY_08611"; transcript_id "RvY_08611.1"; Scaffold004 rebuild exon 749230 749454 . + . gene_id "RvY_08611"; transcript_id "RvY_08611.1"; Scaffold004 rebuild exon 749537 749925 . + . gene_id "RvY_08611"; transcript_id "RvY_08611.1"; Scaffold004 rebuild exon 750130 750350 . + . gene_id "RvY_08611"; transcript_id "RvY_08611.1"; Scaffold004 rebuild exon 750407 750572 . + . gene_id "RvY_08611"; transcript_id "RvY_08611.1"; Scaffold004 rebuild transcript 751368 755340 . - . gene_id "RvY_08612"; transcript_id "RvY_08612.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold004 rebuild exon 751368 752171 . - . gene_id "RvY_08612"; transcript_id "RvY_08612.1"; Scaffold004 rebuild exon 752626 753016 . - . gene_id "RvY_08612"; transcript_id "RvY_08612.1"; Scaffold004 rebuild exon 753168 754696 . - . gene_id "RvY_08612"; transcript_id "RvY_08612.1"; Scaffold004 rebuild exon 755023 755340 . - . gene_id "RvY_08612"; transcript_id "RvY_08612.1"; Scaffold004 rebuild transcript 756005 759010 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 756005 756511 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; Scaffold004 rebuild exon 756581 756613 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; Scaffold004 rebuild exon 756719 756895 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; Scaffold004 rebuild exon 757727 758184 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; Scaffold004 rebuild exon 758255 758323 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; Scaffold004 rebuild exon 758680 759010 . - . gene_id "RvY_08613"; transcript_id "RvY_08613.1"; Scaffold004 rebuild transcript 761007 763100 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; gene_name "CDK10"; annotation "putative Cell division protein kinase 10"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen."; EC "EC2.7.11.22"; KO "K02449"; similar_genes "CDK10_HUMAN(e-value:2.3e-27;bit-score:120.0)"; Scaffold004 rebuild exon 761007 761140 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; Scaffold004 rebuild exon 761394 761640 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; Scaffold004 rebuild exon 761735 761867 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; Scaffold004 rebuild exon 762076 762559 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; Scaffold004 rebuild exon 762662 762806 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; Scaffold004 rebuild exon 762963 763100 . - . gene_id "RvY_08614"; transcript_id "RvY_08614.1"; Scaffold004 rebuild transcript 763939 764130 . + . gene_id "RvY_08615"; transcript_id "RvY_08615.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 763939 764130 . + . gene_id "RvY_08615"; transcript_id "RvY_08615.1"; Scaffold004 rebuild transcript 766067 768846 . + . gene_id "RvY_08616"; transcript_id "RvY_08616.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 766067 766850 . + . gene_id "RvY_08616"; transcript_id "RvY_08616.1"; Scaffold004 rebuild exon 767240 767946 . + . gene_id "RvY_08616"; transcript_id "RvY_08616.1"; Scaffold004 rebuild exon 768421 768846 . + . gene_id "RvY_08616"; transcript_id "RvY_08616.1"; Scaffold004 rebuild transcript 766067 767068 . + . gene_id "RvY_08616"; transcript_id "RvY_08616.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 766067 767068 . + . gene_id "RvY_08616"; transcript_id "RvY_08616.2"; Scaffold004 rebuild transcript 769331 769766 . - . gene_id "RvY_08617"; transcript_id "RvY_08617.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 769331 769383 . - . gene_id "RvY_08617"; transcript_id "RvY_08617.1"; Scaffold004 rebuild exon 769451 769766 . - . gene_id "RvY_08617"; transcript_id "RvY_08617.1"; Scaffold004 rebuild transcript 770085 771404 . - . gene_id "RvY_08618"; transcript_id "RvY_08618.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 770085 770516 . - . gene_id "RvY_08618"; transcript_id "RvY_08618.1"; Scaffold004 rebuild exon 771294 771404 . - . gene_id "RvY_08618"; transcript_id "RvY_08618.1"; Scaffold004 rebuild transcript 771874 778281 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; gene_name "ACTN"; annotation "(1)Alpha-actinin, sarcomeric(2)Alpha-actinin-4"; Pfam "[efhand] EF hand|[Spectrin] Spectrin repeat|[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain|[efhand_Ca_insen] Ca2+ insensitive EF hand|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; KO "K05699"; similar_genes "(1)ACTN_DROME(e-value:2.1e-134;bit-score:476.0)(2)ACTN4_PONAB(e-value:2.0e-130;bit-score:462.0)"; Scaffold004 rebuild exon 771874 772116 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 773120 773354 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 773429 773515 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 773583 773670 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 773734 773894 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 774560 774645 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 774881 774973 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 775225 775532 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 775775 775996 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 776111 776282 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 776508 776829 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 776999 777321 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 777558 777716 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 777803 777961 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild exon 778132 778281 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.1"; Scaffold004 rebuild transcript 771952 778281 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; gene_name "ACTN"; annotation "(1)Alpha-actinin, sarcomeric(2)Alpha-actinin-4"; Pfam "[efhand] EF hand|[Spectrin] Spectrin repeat|[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain|[efhand_Ca_insen] Ca2+ insensitive EF hand|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; KO "K05699"; similar_genes "(1)ACTN_DROME(e-value:2.1e-134;bit-score:476.0)(2)ACTN4_PONAB(e-value:2.0e-130;bit-score:462.0)"; Scaffold004 rebuild exon 771952 772116 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 773120 773354 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 773429 773515 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 773583 773670 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 773734 773894 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 774055 774140 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 774881 774973 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 775225 775532 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 775775 775996 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 776111 776282 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 776508 776829 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 776999 777321 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 777558 777716 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 777803 777961 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild exon 778132 778281 . + . gene_id "RvY_08619"; transcript_id "RvY_08619.2"; Scaffold004 rebuild transcript 778662 783121 . - . gene_id "RvY_08620"; transcript_id "RvY_08620.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K14071"; Scaffold004 rebuild exon 778662 779084 . - . gene_id "RvY_08620"; transcript_id "RvY_08620.1"; Scaffold004 rebuild exon 779571 779661 . - . gene_id "RvY_08620"; transcript_id "RvY_08620.1"; Scaffold004 rebuild exon 780071 780171 . - . gene_id "RvY_08620"; transcript_id "RvY_08620.1"; Scaffold004 rebuild exon 781845 782303 . - . gene_id "RvY_08620"; transcript_id "RvY_08620.1"; Scaffold004 rebuild exon 782699 783121 . - . gene_id "RvY_08620"; transcript_id "RvY_08620.1"; Scaffold004 rebuild transcript 787862 802382 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; gene_name "ANK"; annotation "Ankyrin repeat and KH domain-containing protein mask"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[KH_3] KH domain|[KH_1] KH domain|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "ANKHM_DROME(e-value:1.1e-52;bit-score:204.0)"; Scaffold004 rebuild exon 787862 787972 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 788440 788769 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 789131 789795 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 789853 790147 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 790227 790625 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 790827 791027 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 791085 791477 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 791675 792149 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 792718 793179 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 793430 793605 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 793674 793884 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 793948 794245 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 795713 796114 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 796929 797199 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 797404 797798 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 798106 798289 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 798356 798576 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 798645 798960 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 799392 799742 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 799948 800252 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 800312 800647 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 800871 801257 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 801401 801609 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 801690 801819 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 801998 802181 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 802261 802283 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild exon 802343 802382 . - . gene_id "RvY_08621"; transcript_id "RvY_08621.1"; Scaffold004 rebuild transcript 804386 804744 . - . gene_id "RvY_08622"; transcript_id "RvY_08622.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 804386 804487 . - . gene_id "RvY_08622"; transcript_id "RvY_08622.1"; Scaffold004 rebuild exon 804625 804744 . - . gene_id "RvY_08622"; transcript_id "RvY_08622.1"; Scaffold004 rebuild transcript 804801 805363 . - . gene_id "RvY_08623"; transcript_id "RvY_08623.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 804801 805165 . - . gene_id "RvY_08623"; transcript_id "RvY_08623.1"; Scaffold004 rebuild exon 805246 805363 . - . gene_id "RvY_08623"; transcript_id "RvY_08623.1"; Scaffold004 rebuild transcript 806429 808285 . - . gene_id "RvY_08624"; transcript_id "RvY_08624.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 806429 806575 . - . gene_id "RvY_08624"; transcript_id "RvY_08624.1"; Scaffold004 rebuild exon 808055 808285 . - . gene_id "RvY_08624"; transcript_id "RvY_08624.1"; Scaffold004 rebuild transcript 810114 813091 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; gene_name "BAH_MTA"; annotation "hypothetical protein."; Pfam "[BAH]"; CDD "BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions."; Scaffold004 rebuild exon 810114 810135 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 810200 810367 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 810438 810505 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 810575 810933 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 811004 811088 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 811404 811817 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 811894 812101 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 812160 812480 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild exon 812823 813091 . + . gene_id "RvY_08625"; transcript_id "RvY_08625.1"; Scaffold004 rebuild transcript 814394 815103 . - . gene_id "RvY_08626"; transcript_id "RvY_08626.1"; gene_name "(1)GSC"; annotation "(1)putative Homeobox protein goosecoid(2)hypothetical protein."; Pfam "[Homeobox]"; KO "(1)K09324"; similar_genes "(1)GSC_DROME(e-value:2.7e-30;bit-score:130.0)(2)GSC_DROME(e-value:8.2e-17;bit-score:85.0)"; Scaffold004 rebuild exon 814394 814717 . - . gene_id "RvY_08626"; transcript_id "RvY_08626.1"; Scaffold004 rebuild exon 814804 815103 . - . gene_id "RvY_08626"; transcript_id "RvY_08626.1"; Scaffold004 rebuild transcript 814786 815103 . - . gene_id "RvY_08626"; transcript_id "RvY_08626.2"; gene_name "(1)GSC"; annotation "(1)putative Homeobox protein goosecoid(2)hypothetical protein."; Pfam "[Homeobox]"; KO "(1)K09324"; similar_genes "(1)GSC_DROME(e-value:2.7e-30;bit-score:130.0)(2)GSC_DROME(e-value:8.2e-17;bit-score:85.0)"; Scaffold004 rebuild exon 814786 815103 . - . gene_id "RvY_08626"; transcript_id "RvY_08626.2"; Scaffold004 rebuild transcript 817811 817993 . - . gene_id "RvY_08627"; transcript_id "RvY_08627.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 817811 817993 . - . gene_id "RvY_08627"; transcript_id "RvY_08627.1"; Scaffold004 rebuild transcript 819151 819528 . - . gene_id "RvY_08628"; transcript_id "RvY_08628.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 819151 819275 . - . gene_id "RvY_08628"; transcript_id "RvY_08628.1"; Scaffold004 rebuild exon 819396 819528 . - . gene_id "RvY_08628"; transcript_id "RvY_08628.1"; Scaffold004 rebuild transcript 824502 825818 . - . gene_id "RvY_08629"; transcript_id "RvY_08629.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold004 rebuild exon 824502 824735 . - . gene_id "RvY_08629"; transcript_id "RvY_08629.1"; Scaffold004 rebuild exon 824799 824945 . - . gene_id "RvY_08629"; transcript_id "RvY_08629.1"; Scaffold004 rebuild exon 825032 825109 . - . gene_id "RvY_08629"; transcript_id "RvY_08629.1"; Scaffold004 rebuild exon 825816 825818 . - . gene_id "RvY_08629"; transcript_id "RvY_08629.1"; Scaffold004 rebuild transcript 827569 828903 . - . gene_id "RvY_08630"; transcript_id "RvY_08630.1"; annotation "hypothetical protein."; Pfam "[Eapp_C] E2F-associated phosphoprotein"; similar_genes "EAPP_HUMAN(e-value:4.0e-10;bit-score:63.0)"; Scaffold004 rebuild exon 827569 827809 . - . gene_id "RvY_08630"; transcript_id "RvY_08630.1"; Scaffold004 rebuild exon 827876 828191 . - . gene_id "RvY_08630"; transcript_id "RvY_08630.1"; Scaffold004 rebuild exon 828286 828761 . - . gene_id "RvY_08630"; transcript_id "RvY_08630.1"; Scaffold004 rebuild exon 828824 828903 . - . gene_id "RvY_08630"; transcript_id "RvY_08630.1"; Scaffold004 rebuild transcript 829343 829975 . - . gene_id "RvY_08631"; transcript_id "RvY_08631.1"; annotation "hypothetical protein."; Pfam "[Med22] Surfeit locus protein 5 subunit 22 of Mediator complex"; KO "K15139"; Scaffold004 rebuild exon 829343 829597 . - . gene_id "RvY_08631"; transcript_id "RvY_08631.1"; Scaffold004 rebuild exon 829680 829763 . - . gene_id "RvY_08631"; transcript_id "RvY_08631.1"; Scaffold004 rebuild exon 829847 829975 . - . gene_id "RvY_08631"; transcript_id "RvY_08631.1"; Scaffold004 rebuild transcript 831099 832749 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; gene_name "YIF1"; annotation "hypothetical protein."; Pfam "[YIF1]|[Yip1]"; CDD "YIF1. YIF1 (Yip1 interacting factor) is an integral membrane protein that is required for membrane fusion of ER derived vesicles. It also plays a role in the biogenesis of ER derived COPII transport vesicles."; similar_genes "YF1BA_XENLA(e-value:2.1e-15;bit-score:80.0)"; Scaffold004 rebuild exon 831099 831126 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild exon 831200 831442 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild exon 831609 831796 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild exon 831865 832106 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild exon 832168 832323 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild exon 832407 832500 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild exon 832564 832749 . + . gene_id "RvY_08632"; transcript_id "RvY_08632.1"; Scaffold004 rebuild transcript 833368 834040 . - . gene_id "RvY_08633"; transcript_id "RvY_08633.1"; gene_name "3a0801so1tim17"; annotation "Mitochondrial import inner membrane translocase subunit Tim17-A"; Pfam "[Tim17] Tim17/Tim22/Tim23/Pmp24 family"; CDD "mitochondrial import inner membrane translocase subunit tim17."; similar_genes "TI17A_MOUSE(e-value:1.1e-58;bit-score:224.0)"; Scaffold004 rebuild exon 833368 833693 . - . gene_id "RvY_08633"; transcript_id "RvY_08633.1"; Scaffold004 rebuild exon 833833 834040 . - . gene_id "RvY_08633"; transcript_id "RvY_08633.1"; Scaffold004 rebuild transcript 834720 838040 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; gene_name "THOC1"; annotation "THO complex subunit 1"; Pfam "[Death]|[efThoc1] THO complex subunit 1 transcription elongation factor"; KO "K12878"; Scaffold004 rebuild exon 834720 834758 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 834868 835068 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 835235 835481 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 835549 835832 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 836023 836321 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 836408 836522 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 836604 836959 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 837190 837601 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild exon 837810 838040 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.1"; Scaffold004 rebuild transcript 834720 838040 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; gene_name "THOC1"; annotation "THO complex subunit 1"; Pfam "[Death]|[efThoc1] THO complex subunit 1 transcription elongation factor"; KO "K12878"; Scaffold004 rebuild exon 834720 834758 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 834868 835068 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 835241 835481 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 835549 835832 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 836023 836321 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 836408 836522 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 836604 836959 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 837190 837601 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild exon 837810 838040 . + . gene_id "RvY_08634"; transcript_id "RvY_08634.2"; Scaffold004 rebuild transcript 838652 839410 . + . gene_id "RvY_08635"; transcript_id "RvY_08635.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 838652 839410 . + . gene_id "RvY_08635"; transcript_id "RvY_08635.1"; Scaffold004 rebuild transcript 840029 840964 . + . gene_id "RvY_08636"; transcript_id "RvY_08636.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 840029 840964 . + . gene_id "RvY_08636"; transcript_id "RvY_08636.1"; Scaffold004 rebuild transcript 841112 843187 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 841112 841206 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 841310 841655 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 841715 841924 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 841993 842062 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 842138 842256 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 842326 842468 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 842627 842911 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild exon 843010 843187 . - . gene_id "RvY_08637"; transcript_id "RvY_08637.1"; Scaffold004 rebuild transcript 843664 844999 . - . gene_id "RvY_08638"; transcript_id "RvY_08638.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 843664 843942 . - . gene_id "RvY_08638"; transcript_id "RvY_08638.1"; Scaffold004 rebuild exon 844004 844072 . - . gene_id "RvY_08638"; transcript_id "RvY_08638.1"; Scaffold004 rebuild exon 844147 844697 . - . gene_id "RvY_08638"; transcript_id "RvY_08638.1"; Scaffold004 rebuild exon 844762 844999 . - . gene_id "RvY_08638"; transcript_id "RvY_08638.1"; Scaffold004 rebuild transcript 847066 848396 . + . gene_id "RvY_08639"; transcript_id "RvY_08639.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 847066 847272 . + . gene_id "RvY_08639"; transcript_id "RvY_08639.1"; Scaffold004 rebuild exon 847422 847661 . + . gene_id "RvY_08639"; transcript_id "RvY_08639.1"; Scaffold004 rebuild exon 847729 848124 . + . gene_id "RvY_08639"; transcript_id "RvY_08639.1"; Scaffold004 rebuild exon 848184 848396 . + . gene_id "RvY_08639"; transcript_id "RvY_08639.1"; Scaffold004 rebuild transcript 848685 849830 . - . gene_id "RvY_08640"; transcript_id "RvY_08640.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 848685 849330 . - . gene_id "RvY_08640"; transcript_id "RvY_08640.1"; Scaffold004 rebuild exon 849494 849574 . - . gene_id "RvY_08640"; transcript_id "RvY_08640.1"; Scaffold004 rebuild exon 849670 849830 . - . gene_id "RvY_08640"; transcript_id "RvY_08640.1"; Scaffold004 rebuild transcript 850843 852441 . - . gene_id "RvY_08641"; transcript_id "RvY_08641.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 850843 851506 . - . gene_id "RvY_08641"; transcript_id "RvY_08641.1"; Scaffold004 rebuild exon 851607 851825 . - . gene_id "RvY_08641"; transcript_id "RvY_08641.1"; Scaffold004 rebuild exon 851912 852441 . - . gene_id "RvY_08641"; transcript_id "RvY_08641.1"; Scaffold004 rebuild transcript 853870 854163 . + . gene_id "RvY_08642"; transcript_id "RvY_08642.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 853870 854163 . + . gene_id "RvY_08642"; transcript_id "RvY_08642.1"; Scaffold004 rebuild transcript 854378 855584 . - . gene_id "RvY_08643"; transcript_id "RvY_08643.1"; gene_name "K06927"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[ATP_bind_4] ATP-binding region"; CDD "This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus."; KO "K06927"; similar_genes "ATBD4_BOVIN(e-value:2.5e-18;bit-score:90.0)"; Scaffold004 rebuild exon 854378 854845 . - . gene_id "RvY_08643"; transcript_id "RvY_08643.1"; Scaffold004 rebuild exon 854903 855183 . - . gene_id "RvY_08643"; transcript_id "RvY_08643.1"; Scaffold004 rebuild exon 855373 855464 . - . gene_id "RvY_08643"; transcript_id "RvY_08643.1"; Scaffold004 rebuild exon 855562 855584 . - . gene_id "RvY_08643"; transcript_id "RvY_08643.1"; Scaffold004 rebuild transcript 857131 859826 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; gene_name "PDZ"; annotation "hypothetical protein."; Pfam "[LIM]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; Scaffold004 rebuild exon 857131 857218 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 857514 857554 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 857768 857794 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 857882 858012 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 858318 858719 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 859051 859332 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 859407 859492 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 859566 859596 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 859678 859704 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild exon 859781 859826 . + . gene_id "RvY_08644"; transcript_id "RvY_08644.1"; Scaffold004 rebuild transcript 860330 869849 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; gene_name "UBR2"; annotation "E3 ubiquitin-protein ligase UBR2 [EC:6.3.2.19]"; Pfam "[zf-UBR] Putative zinc finger in N-recognin (UBR box)|[ClpS] ATP-dependent Clp protease adaptor protein ClpS"; CDD "Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10626"; similar_genes "UBR2_MOUSE(e-value:2.0e-24;bit-score:110.0)"; Scaffold004 rebuild exon 860330 860471 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 860548 860649 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 860718 860888 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 860959 861036 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 861282 861459 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 861549 861706 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 861786 862042 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 862098 862394 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 862499 862562 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 862693 863139 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 863330 863725 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 864014 864635 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 864945 865360 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 865649 865816 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 865899 866067 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 866353 866685 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 867542 868046 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 868195 868498 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 868556 869034 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 869322 869627 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild exon 869820 869849 . - . gene_id "RvY_08645"; transcript_id "RvY_08645.1"; Scaffold004 rebuild transcript 872121 872807 . + . gene_id "RvY_08646"; transcript_id "RvY_08646.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 872121 872807 . + . gene_id "RvY_08646"; transcript_id "RvY_08646.1"; Scaffold004 rebuild transcript 873298 873885 . + . gene_id "RvY_08647"; transcript_id "RvY_08647.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold004 rebuild exon 873298 873885 . + . gene_id "RvY_08647"; transcript_id "RvY_08647.1"; Scaffold004 rebuild transcript 874156 874482 . - . gene_id "RvY_08648"; transcript_id "RvY_08648.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold004 rebuild exon 874156 874482 . - . gene_id "RvY_08648"; transcript_id "RvY_08648.1"; Scaffold004 rebuild transcript 875589 890504 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K14049"; similar_genes "DRD2L_DROME(e-value:1.5e-22;bit-score:104.0)"; Scaffold004 rebuild exon 875589 875809 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; Scaffold004 rebuild exon 875874 876748 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; Scaffold004 rebuild exon 876831 877052 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; Scaffold004 rebuild exon 878207 878319 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; Scaffold004 rebuild exon 879250 880509 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; Scaffold004 rebuild exon 890475 890504 . - . gene_id "RvY_08649"; transcript_id "RvY_08649.1"; Scaffold004 rebuild transcript 893381 895226 . - . gene_id "RvY_08650"; transcript_id "RvY_08650.1"; gene_name "DPF2"; annotation "zinc finger protein ubi-d4"; Pfam "[Requiem_N] N-terminal domain of DPF2/REQ.|[PHD] PHD-finger"; KO "K13196"; similar_genes "DPF1_CHICK(e-value:1.7e-21;bit-score:100.0)"; Scaffold004 rebuild exon 893381 893632 . - . gene_id "RvY_08650"; transcript_id "RvY_08650.1"; Scaffold004 rebuild exon 893732 893844 . - . gene_id "RvY_08650"; transcript_id "RvY_08650.1"; Scaffold004 rebuild exon 893911 894219 . - . gene_id "RvY_08650"; transcript_id "RvY_08650.1"; Scaffold004 rebuild exon 894302 894371 . - . gene_id "RvY_08650"; transcript_id "RvY_08650.1"; Scaffold004 rebuild exon 894642 895226 . - . gene_id "RvY_08650"; transcript_id "RvY_08650.1"; Scaffold004 rebuild transcript 896130 896363 . + . gene_id "RvY_08651"; transcript_id "RvY_08651.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 896130 896199 . + . gene_id "RvY_08651"; transcript_id "RvY_08651.1"; Scaffold004 rebuild exon 896278 896363 . + . gene_id "RvY_08651"; transcript_id "RvY_08651.1"; Scaffold004 rebuild transcript 896537 896716 . - . gene_id "RvY_08652"; transcript_id "RvY_08652.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 896537 896716 . - . gene_id "RvY_08652"; transcript_id "RvY_08652.1"; Scaffold004 rebuild transcript 897801 903851 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; gene_name "LamG"; annotation "putative Fibropellin-1"; Pfam "[Laminin_G_2] Laminin G domain|[EGF] EGF-like domain|[EGF_CA] Calcium-binding EGF domain|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain."; similar_genes "FBP1_STRPU(e-value:4.9e-38;bit-score:155.0)"; Scaffold004 rebuild exon 897801 898290 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 898741 898945 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 899027 899721 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 900017 900548 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 900796 901025 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 901159 901594 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 901856 902125 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 902258 902373 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 902604 903061 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 903197 903549 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild exon 903614 903851 . + . gene_id "RvY_08653"; transcript_id "RvY_08653.1"; Scaffold004 rebuild transcript 904426 905599 . - . gene_id "RvY_08654"; transcript_id "RvY_08654.1"; annotation "BTB/POZ domain-containing protein KCTD5"; Pfam "[K_tetra] K+ channel tetramerisation domain"; similar_genes "KCTD5_BOVIN(e-value:3.2e-69;bit-score:259.0)"; Scaffold004 rebuild exon 904426 904683 . - . gene_id "RvY_08654"; transcript_id "RvY_08654.1"; Scaffold004 rebuild exon 904758 904849 . - . gene_id "RvY_08654"; transcript_id "RvY_08654.1"; Scaffold004 rebuild exon 904931 905039 . - . gene_id "RvY_08654"; transcript_id "RvY_08654.1"; Scaffold004 rebuild exon 905219 905252 . - . gene_id "RvY_08654"; transcript_id "RvY_08654.1"; Scaffold004 rebuild exon 905421 905599 . - . gene_id "RvY_08654"; transcript_id "RvY_08654.1"; Scaffold004 rebuild transcript 907730 909555 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; gene_name "SpoVK"; annotation "putative ATPase family AAA domain-containing protein 1"; Pfam "[AAA_16] AAA ATPase domain|[RuvB_N] Holliday junction DNA helicase ruvB N-terminus|[AAA_14] AAA domain|[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_17] AAA domain"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; similar_genes "ATAD1_RAT(e-value:3.4e-43;bit-score:173.0)"; Scaffold004 rebuild exon 907730 907844 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 907932 908092 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 908342 908392 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 908473 908538 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 908605 908735 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 908833 908964 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 909037 909328 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild exon 909388 909555 . - . gene_id "RvY_08655"; transcript_id "RvY_08655.1"; Scaffold004 rebuild transcript 910174 912173 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; gene_name "ahcY"; annotation "Adenosylhomocysteinase"; Pfam "[AdoHcyase_NAD] S-adenosyl-L-homocysteine hydrolase, NAD binding domain|[2-Hacid_dh_C] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain|[AdoHcyase] S-adenosyl-L-homocysteine hydrolase"; EC "EC3.3.1.1"; KO "K01251"; similar_genes "SAHH_HALHL(e-value:1.7e-95;bit-score:346.0)"; Scaffold004 rebuild exon 910174 910240 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild exon 910332 910522 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild exon 910638 910985 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild exon 911233 911440 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild exon 911509 911717 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild exon 911784 911978 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild exon 912042 912173 . + . gene_id "RvY_08656"; transcript_id "RvY_08656.1"; Scaffold004 rebuild transcript 913902 916696 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; annotation "hypothetical protein."; Pfam "[Hemopexin]|[PG_binding_1] Putative peptidoglycan binding domain|[Peptidase_M10] Matrixin"; EC "EC3.4.24.12"; similar_genes "HE_PARLI(e-value:6.5e-21;bit-score:99.0)"; Scaffold004 rebuild exon 913902 914000 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; Scaffold004 rebuild exon 914409 914538 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; Scaffold004 rebuild exon 914621 914850 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; Scaffold004 rebuild exon 914932 915133 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; Scaffold004 rebuild exon 915225 915715 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; Scaffold004 rebuild exon 916028 916696 . + . gene_id "RvY_08657"; transcript_id "RvY_08657.1"; Scaffold004 rebuild transcript 917604 918732 . + . gene_id "RvY_08658"; transcript_id "RvY_08658.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 917604 917775 . + . gene_id "RvY_08658"; transcript_id "RvY_08658.1"; Scaffold004 rebuild exon 917993 918732 . + . gene_id "RvY_08658"; transcript_id "RvY_08658.1"; Scaffold004 rebuild transcript 921196 923043 . + . gene_id "RvY_08659"; transcript_id "RvY_08659.1"; gene_name "beta_CA_cladeB"; annotation "hypothetical protein."; Pfam "[Pro_CA] Carbonic anhydrase"; CDD "Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an Scaffold004 rebuild exon 921196 921519 . + . gene_id "RvY_08659"; transcript_id "RvY_08659.1"; Scaffold004 rebuild exon 921601 921745 . + . gene_id "RvY_08659"; transcript_id "RvY_08659.1"; Scaffold004 rebuild exon 922062 922144 . + . gene_id "RvY_08659"; transcript_id "RvY_08659.1"; Scaffold004 rebuild exon 922287 922517 . + . gene_id "RvY_08659"; transcript_id "RvY_08659.1"; Scaffold004 rebuild exon 922795 923043 . + . gene_id "RvY_08659"; transcript_id "RvY_08659.1"; Scaffold004 rebuild transcript 928533 932319 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; gene_name "SNAP23"; annotation "putative Synaptosomal-associated protein 25"; Pfam "[SNARE]|[SNAP-25] SNAP-25 family"; KO "K08508"; similar_genes "(1)SNP25_TORMA(e-value:1.1e-33;bit-score:141.0)(2)SNP25_TORMA(e-value:8.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 928533 928712 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild exon 929112 929153 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild exon 929862 929910 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild exon 930056 930173 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild exon 930244 930381 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild exon 932045 932128 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild exon 932190 932319 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.1"; Scaffold004 rebuild transcript 926728 932319 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; gene_name "SNAP23"; annotation "putative Synaptosomal-associated protein 25"; Pfam "[SNARE]|[SNAP-25] SNAP-25 family"; KO "K08508"; similar_genes "(1)SNP25_TORMA(e-value:1.1e-33;bit-score:141.0)(2)SNP25_TORMA(e-value:8.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 926728 926817 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild exon 929112 929153 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild exon 929862 929910 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild exon 930056 930173 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild exon 930244 930381 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild exon 932045 932128 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild exon 932190 932319 . + . gene_id "RvY_08660"; transcript_id "RvY_08660.2"; Scaffold004 rebuild transcript 933407 937959 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; gene_name "Macoilin"; annotation "hypothetical protein."; Pfam "[Macoilin] Transmembrane protein"; CDD "Transmembrane protein. This entry is a highly conserved protein present in eukaryotes."; similar_genes "MACOI_CANFA(e-value:6.2e-15;bit-score:79.0)"; Scaffold004 rebuild exon 933407 933489 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 934143 934284 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 934423 934532 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 934609 934806 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 934929 934995 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 935086 935206 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 935454 936150 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 936424 936735 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 937001 937124 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 937190 937364 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild exon 937703 937959 . + . gene_id "RvY_08661"; transcript_id "RvY_08661.1"; Scaffold004 rebuild transcript 939739 942623 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; gene_name "Pat_iPLA2"; annotation "hypothetical protein."; Pfam "[Patatin] Patatin-like phospholipase"; CDD "Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity."; EC "EC3.1.1.-"; similar_genes "YPD7_CAEEL(e-value:3.7e-17;bit-score:86.0)"; Scaffold004 rebuild exon 939739 939916 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild exon 940180 940478 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild exon 940548 940818 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild exon 940919 941230 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild exon 941310 941541 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild exon 942106 942487 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild exon 942570 942623 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.1"; Scaffold004 rebuild transcript 939697 941620 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.2"; gene_name "Pat_iPLA2"; annotation "hypothetical protein."; Pfam "[Patatin] Patatin-like phospholipase"; CDD "Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity."; EC "EC3.1.1.-"; similar_genes "YPD7_CAEEL(e-value:3.7e-17;bit-score:86.0)"; Scaffold004 rebuild exon 939697 939916 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.2"; Scaffold004 rebuild exon 940180 940478 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.2"; Scaffold004 rebuild exon 940548 940818 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.2"; Scaffold004 rebuild exon 940919 941230 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.2"; Scaffold004 rebuild exon 941310 941620 . + . gene_id "RvY_08662"; transcript_id "RvY_08662.2"; Scaffold004 rebuild transcript 946013 951223 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; gene_name "FRQ1"; annotation "putative Neuronal calcium sensor 1"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "NCS1_CAEEL(e-value:6.8e-27;bit-score:118.0)"; Scaffold004 rebuild exon 946013 946076 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild exon 946152 946176 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild exon 947759 947807 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild exon 949276 949368 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild exon 949449 949527 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild exon 949627 949787 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild exon 951125 951223 . + . gene_id "RvY_08663"; transcript_id "RvY_08663.1"; Scaffold004 rebuild transcript 952012 953732 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; gene_name "hemH"; annotation "Ferrochelatase, mitochondrial"; Pfam "[Ferrochelatase]"; EC "EC4.99.1.1"; KO "K01772"; similar_genes "HEMH_MOUSE(e-value:1.7e-110;bit-score:396.0)"; Scaffold004 rebuild exon 952012 952146 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; Scaffold004 rebuild exon 952222 952446 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; Scaffold004 rebuild exon 952547 952654 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; Scaffold004 rebuild exon 952710 953199 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; Scaffold004 rebuild exon 953272 953439 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; Scaffold004 rebuild exon 953689 953732 . - . gene_id "RvY_08664"; transcript_id "RvY_08664.1"; Scaffold004 rebuild transcript 954510 955327 . + . gene_id "RvY_08665"; transcript_id "RvY_08665.1"; gene_name "metazoan_ACD"; annotation "hypothetical protein."; Pfam "[HSP20] Hsp20/alpha crystallin family"; CDD "Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally Scaffold004 rebuild exon 954510 954659 . + . gene_id "RvY_08665"; transcript_id "RvY_08665.1"; Scaffold004 rebuild exon 954890 955327 . + . gene_id "RvY_08665"; transcript_id "RvY_08665.1"; Scaffold004 rebuild transcript 956893 958194 . - . gene_id "RvY_08666"; transcript_id "RvY_08666.1"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold004 rebuild exon 956893 957206 . - . gene_id "RvY_08666"; transcript_id "RvY_08666.1"; Scaffold004 rebuild exon 957293 957660 . - . gene_id "RvY_08666"; transcript_id "RvY_08666.1"; Scaffold004 rebuild exon 957731 957805 . - . gene_id "RvY_08666"; transcript_id "RvY_08666.1"; Scaffold004 rebuild exon 957872 958194 . - . gene_id "RvY_08666"; transcript_id "RvY_08666.1"; Scaffold004 rebuild transcript 959678 960004 . + . gene_id "RvY_08667"; transcript_id "RvY_08667.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 959678 959815 . + . gene_id "RvY_08667"; transcript_id "RvY_08667.1"; Scaffold004 rebuild exon 959885 960004 . + . gene_id "RvY_08667"; transcript_id "RvY_08667.1"; Scaffold004 rebuild transcript 960817 962082 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 960817 960931 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.1"; Scaffold004 rebuild exon 961250 961483 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.1"; Scaffold004 rebuild exon 961563 961607 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.1"; Scaffold004 rebuild exon 961685 962082 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.1"; Scaffold004 rebuild transcript 960817 961542 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 960817 960931 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.2"; Scaffold004 rebuild exon 961250 961542 . + . gene_id "RvY_08668"; transcript_id "RvY_08668.2"; Scaffold004 rebuild transcript 962212 962810 . - . gene_id "RvY_08669"; transcript_id "RvY_08669.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 962212 962404 . - . gene_id "RvY_08669"; transcript_id "RvY_08669.1"; Scaffold004 rebuild exon 962704 962810 . - . gene_id "RvY_08669"; transcript_id "RvY_08669.1"; Scaffold004 rebuild transcript 963943 965460 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; annotation "hypothetical protein."; Pfam "[hSac2] Inositol phosphatase"; Scaffold004 rebuild exon 963943 963981 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; Scaffold004 rebuild exon 964078 964537 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; Scaffold004 rebuild exon 964605 964660 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; Scaffold004 rebuild exon 964732 964796 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; Scaffold004 rebuild exon 964869 965028 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; Scaffold004 rebuild exon 965116 965460 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.1"; Scaffold004 rebuild transcript 963758 964465 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.2"; annotation "hypothetical protein."; Pfam "[hSac2] Inositol phosphatase"; Scaffold004 rebuild exon 963758 963981 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.2"; Scaffold004 rebuild exon 964078 964465 . - . gene_id "RvY_08670"; transcript_id "RvY_08670.2"; Scaffold004 rebuild transcript 966527 970738 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold004 rebuild exon 966527 966535 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 966611 966786 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 966866 967013 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 967303 967820 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 968170 968501 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 968590 968686 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 968768 968920 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 968986 969021 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 969095 969480 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 969564 969684 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 969778 969996 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 970102 970443 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild exon 970552 970738 . - . gene_id "RvY_08671"; transcript_id "RvY_08671.1"; Scaffold004 rebuild transcript 971140 975885 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; gene_name "BAP1"; annotation "ubiquitin carboxyl-terminal hydrolase BAP1 [EC:3.4.19.12]"; Pfam "[Peptidase_C12] Ubiquitin carboxyl-terminal hydrolase, family 1"; EC "EC3.4.19.12"; KO "K08588"; similar_genes "BAP1_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold004 rebuild exon 971140 971252 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 971470 971662 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 971744 971836 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 971913 972037 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 972100 972738 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 973027 973473 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 973700 973987 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 974087 974551 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 974795 974976 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 975043 975104 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 975175 975294 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 975395 975600 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild exon 975681 975885 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.1"; Scaffold004 rebuild transcript 971456 975885 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; gene_name "BAP1"; annotation "ubiquitin carboxyl-terminal hydrolase BAP1 [EC:3.4.19.12]"; Pfam "[Peptidase_C12] Ubiquitin carboxyl-terminal hydrolase, family 1"; EC "EC3.4.19.12"; KO "K08588"; similar_genes "BAP1_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold004 rebuild exon 971456 971662 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 971744 971836 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 971913 972037 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 972100 972738 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 973027 973473 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 973700 973987 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 974087 974551 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 974795 974976 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 975043 975104 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 975175 975294 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 975395 975600 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild exon 975681 975885 . - . gene_id "RvY_08672"; transcript_id "RvY_08672.2"; Scaffold004 rebuild transcript 976275 980283 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; annotation "hypothetical protein."; Pfam "[Foie-gras_1] Foie gras liver health family 1|[Gryzun] Gryzun, putative trafficking through Golgi"; similar_genes "CD041_BOVIN(e-value:3.0e-08;bit-score:56.0)"; Scaffold004 rebuild exon 976275 976925 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild exon 976983 977431 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild exon 977574 977968 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild exon 978038 978423 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild exon 978505 979386 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild exon 979525 979903 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild exon 980003 980283 . + . gene_id "RvY_08673"; transcript_id "RvY_08673.1"; Scaffold004 rebuild transcript 983436 983633 . + . gene_id "RvY_08674"; transcript_id "RvY_08674.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 983436 983633 . + . gene_id "RvY_08674"; transcript_id "RvY_08674.1"; Scaffold004 rebuild transcript 983864 998648 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; gene_name "UNC5"; annotation "netrin receptor unc-5"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Death]|[Ig_3] Immunoglobulin domain|[ZU5]|[TSP_1] Thrombospondin type 1 domain"; CDD "Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site."; KO "K07521"; similar_genes "UNC5A_MOUSE(e-value:8.8e-25;bit-score:111.0)"; Scaffold004 rebuild exon 983864 983966 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 992789 993057 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 993270 993366 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 993465 993749 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 994691 994858 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 995197 995370 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 995497 995550 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 996077 996256 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 996372 996449 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 996567 996727 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 996847 996955 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 997091 997821 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 997881 998404 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild exon 998477 998648 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.1"; Scaffold004 rebuild transcript 983864 998648 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; gene_name "UNC5"; annotation "netrin receptor unc-5"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Death]|[Ig_3] Immunoglobulin domain|[ZU5]|[TSP_1] Thrombospondin type 1 domain"; CDD "Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site."; KO "K07521"; similar_genes "UNC5A_MOUSE(e-value:8.8e-25;bit-score:111.0)"; Scaffold004 rebuild exon 983864 983966 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 992789 993057 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 993270 993366 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 993465 993749 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 994691 994858 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 995197 995370 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 995497 995550 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 996077 996256 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 996567 996727 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 996847 996955 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 997091 997821 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 997881 998404 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild exon 998477 998648 . + . gene_id "RvY_08675"; transcript_id "RvY_08675.2"; Scaffold004 rebuild transcript 999161 1001317 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; gene_name "3a0801s03tim44"; annotation "Mitochondrial import inner membrane translocase subunit TIM44"; Pfam "[Tim44] Tim44-like domain"; CDD "mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three ""motor"" proteins. This family is specific for the Tim proteins."; similar_genes "TIM44_HUMAN(e-value:6.2e-85;bit-score:311.0)"; Scaffold004 rebuild exon 999161 999280 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 999353 999513 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 999594 999809 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 999952 1000270 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 1000453 1000683 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 1000780 1000857 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 1000954 1001061 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild exon 1001123 1001317 . - . gene_id "RvY_08676"; transcript_id "RvY_08676.1"; Scaffold004 rebuild transcript 1002868 1007623 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; gene_name "misato"; annotation "hypothetical protein."; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Misat_Myo_SegII] Misato Segment II myosin-like domain"; CDD "Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown."; Scaffold004 rebuild exon 1002868 1002942 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1003062 1003148 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1003335 1003492 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1003576 1003657 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1003844 1003995 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1004290 1004554 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1004818 1005144 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1005255 1005454 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1006058 1006165 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1007221 1007333 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild exon 1007415 1007623 . + . gene_id "RvY_08677"; transcript_id "RvY_08677.1"; Scaffold004 rebuild transcript 1007912 1016043 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; gene_name "PMS2"; annotation "putative Mismatch repair endonuclease PMS2"; Pfam "[DNA_mis_repair] DNA mismatch repair protein, C-terminal domain|[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[MutL_C] MutL C terminal dimerisation domain|[HATPase_c_3] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase"; CDD "DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10858"; similar_genes "PMS2_MOUSE(e-value:1.5e-26;bit-score:117.0)"; Scaffold004 rebuild exon 1007912 1007980 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1008096 1008131 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1008257 1008399 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1008479 1008556 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1008687 1008802 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1012330 1012460 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1012603 1012754 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1012839 1013087 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1013172 1013916 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1013991 1014323 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1014397 1014466 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1014533 1014630 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1014689 1014922 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1014989 1015067 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1015142 1015308 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1015387 1015492 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1015560 1015662 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1015745 1015831 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild exon 1015911 1016043 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.1"; Scaffold004 rebuild transcript 1012326 1016043 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; gene_name "PMS2"; annotation "putative Mismatch repair endonuclease PMS2"; Pfam "[DNA_mis_repair] DNA mismatch repair protein, C-terminal domain|[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[MutL_C] MutL C terminal dimerisation domain|[HATPase_c_3] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase"; CDD "DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10858"; similar_genes "PMS2_MOUSE(e-value:1.5e-26;bit-score:117.0)"; Scaffold004 rebuild exon 1012326 1012460 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1012603 1012754 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1012839 1013087 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1013172 1013916 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1013991 1014323 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1014397 1014466 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1014533 1014630 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1014689 1014922 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1014989 1015067 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1015142 1015308 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1015387 1015492 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1015560 1015662 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1015745 1015831 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild exon 1015911 1016043 . - . gene_id "RvY_08678"; transcript_id "RvY_08678.2"; Scaffold004 rebuild transcript 1010206 1012123 . + . gene_id "RvY_08679"; transcript_id "RvY_08679.1"; gene_name "p23_NUDCD3_like"; annotation "hypothetical protein."; Pfam "[Nudc_N] N-terminal conserved domain of Nudc.|[CS]"; CDD "p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup."; Scaffold004 rebuild exon 1010206 1010619 . + . gene_id "RvY_08679"; transcript_id "RvY_08679.1"; Scaffold004 rebuild exon 1011213 1011400 . + . gene_id "RvY_08679"; transcript_id "RvY_08679.1"; Scaffold004 rebuild exon 1011655 1012123 . + . gene_id "RvY_08679"; transcript_id "RvY_08679.1"; Scaffold004 rebuild transcript 1016443 1017466 . + . gene_id "RvY_08680"; transcript_id "RvY_08680.1"; gene_name "fixA"; annotation "Electron transfer flavoprotein subunit beta"; Pfam "[ETF] Electron transfer flavoprotein domain"; CDD "Electron transfer flavoprotein, beta subunit [Energy production and conversion]"; KO "K03521"; similar_genes "ETFB_HUMAN(e-value:1.2e-100;bit-score:363.0)"; Scaffold004 rebuild exon 1016443 1016496 . + . gene_id "RvY_08680"; transcript_id "RvY_08680.1"; Scaffold004 rebuild exon 1016577 1016735 . + . gene_id "RvY_08680"; transcript_id "RvY_08680.1"; Scaffold004 rebuild exon 1016795 1016953 . + . gene_id "RvY_08680"; transcript_id "RvY_08680.1"; Scaffold004 rebuild exon 1017013 1017234 . + . gene_id "RvY_08680"; transcript_id "RvY_08680.1"; Scaffold004 rebuild exon 1017296 1017466 . + . gene_id "RvY_08680"; transcript_id "RvY_08680.1"; Scaffold004 rebuild transcript 1017834 1019353 . - . gene_id "RvY_08681"; transcript_id "RvY_08681.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1017834 1018239 . - . gene_id "RvY_08681"; transcript_id "RvY_08681.1"; Scaffold004 rebuild exon 1018302 1018708 . - . gene_id "RvY_08681"; transcript_id "RvY_08681.1"; Scaffold004 rebuild exon 1018785 1019017 . - . gene_id "RvY_08681"; transcript_id "RvY_08681.1"; Scaffold004 rebuild exon 1019092 1019353 . - . gene_id "RvY_08681"; transcript_id "RvY_08681.1"; Scaffold004 rebuild transcript 1019798 1020088 . + . gene_id "RvY_08682"; transcript_id "RvY_08682.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1019798 1020088 . + . gene_id "RvY_08682"; transcript_id "RvY_08682.1"; Scaffold004 rebuild transcript 1020706 1021740 . + . gene_id "RvY_08683"; transcript_id "RvY_08683.1"; gene_name "GST_N_Sigma_like"; annotation "hypothetical protein."; Pfam "[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold004 rebuild exon 1020706 1020838 . + . gene_id "RvY_08683"; transcript_id "RvY_08683.1"; Scaffold004 rebuild exon 1021081 1021199 . + . gene_id "RvY_08683"; transcript_id "RvY_08683.1"; Scaffold004 rebuild exon 1021289 1021396 . + . gene_id "RvY_08683"; transcript_id "RvY_08683.1"; Scaffold004 rebuild exon 1021564 1021740 . + . gene_id "RvY_08683"; transcript_id "RvY_08683.1"; Scaffold004 rebuild transcript 1022132 1022417 . - . gene_id "RvY_08684"; transcript_id "RvY_08684.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1022132 1022188 . - . gene_id "RvY_08684"; transcript_id "RvY_08684.1"; Scaffold004 rebuild exon 1022286 1022417 . - . gene_id "RvY_08684"; transcript_id "RvY_08684.1"; Scaffold004 rebuild transcript 1023111 1023848 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.1"; gene_name "GalE"; annotation "hypothetical protein."; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; CDD "UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]"; Scaffold004 rebuild exon 1023111 1023320 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.1"; Scaffold004 rebuild exon 1023620 1023701 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.1"; Scaffold004 rebuild exon 1023775 1023848 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.1"; Scaffold004 rebuild transcript 1023111 1023721 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.2"; gene_name "GalE"; annotation "hypothetical protein."; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; CDD "UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]"; Scaffold004 rebuild exon 1023111 1023320 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.2"; Scaffold004 rebuild exon 1023620 1023721 . + . gene_id "RvY_08685"; transcript_id "RvY_08685.2"; Scaffold004 rebuild transcript 1024245 1025335 . + . gene_id "RvY_08686"; transcript_id "RvY_08686.1"; annotation "hypothetical protein."; Pfam "[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; EC "EC1.1.1.-"; similar_genes "D42E1_DANRE(e-value:2.9e-21;bit-score:100.0)"; Scaffold004 rebuild exon 1024245 1024418 . + . gene_id "RvY_08686"; transcript_id "RvY_08686.1"; Scaffold004 rebuild exon 1024491 1024556 . + . gene_id "RvY_08686"; transcript_id "RvY_08686.1"; Scaffold004 rebuild exon 1024656 1024724 . + . gene_id "RvY_08686"; transcript_id "RvY_08686.1"; Scaffold004 rebuild exon 1024840 1024903 . + . gene_id "RvY_08686"; transcript_id "RvY_08686.1"; Scaffold004 rebuild exon 1024992 1025335 . + . gene_id "RvY_08686"; transcript_id "RvY_08686.1"; Scaffold004 rebuild transcript 1025539 1026934 . - . gene_id "RvY_08687"; transcript_id "RvY_08687.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_8] Hypothetical methyltransferase"; EC "EC2.1.1.-"; KO "K14850"; similar_genes "RRP8_MOUSE(e-value:1.2e-17;bit-score:88.0)"; Scaffold004 rebuild exon 1025539 1025995 . - . gene_id "RvY_08687"; transcript_id "RvY_08687.1"; Scaffold004 rebuild exon 1026073 1026163 . - . gene_id "RvY_08687"; transcript_id "RvY_08687.1"; Scaffold004 rebuild exon 1026310 1026647 . - . gene_id "RvY_08687"; transcript_id "RvY_08687.1"; Scaffold004 rebuild exon 1026765 1026934 . - . gene_id "RvY_08687"; transcript_id "RvY_08687.1"; Scaffold004 rebuild transcript 1027304 1028585 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1027304 1027559 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.1"; Scaffold004 rebuild exon 1027934 1028394 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.1"; Scaffold004 rebuild exon 1028478 1028585 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.1"; Scaffold004 rebuild transcript 1027304 1028433 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1027304 1027559 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.2"; Scaffold004 rebuild exon 1027934 1028433 . + . gene_id "RvY_08688"; transcript_id "RvY_08688.2"; Scaffold004 rebuild transcript 1029726 1039187 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; gene_name "PRPF8"; annotation "Pre-mRNA-processing-splicing factor 8"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease|[U5_2-snRNA_bdg] U5-snRNA binding site 2 of PrP8|[U6-snRNA_bdg] U6-snRNA interacting domain of PrP8|[PROCN] PROCN (NUC071) domain|[RRM_4] RNA recognition motif of the spliceosomal PrP8|[PRO8NT] PRO8NT (NUC069), PrP8 N-terminal domain|[PRP8_domainIV] PRP8 domain IV core|[PROCT] PROCT (NUC072) domain"; CDD "U5 snRNP spliceosome subunit [RNA processing and modification]"; KO "K12856"; similar_genes "PRP8_HUMAN(e-value:0.0e+00;bit-score:3815.0)"; Scaffold004 rebuild exon 1029726 1030204 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1030306 1030454 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1030522 1030964 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1031099 1031572 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1031846 1032272 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1032388 1032946 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1033017 1033381 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1033635 1034109 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1034384 1034884 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1035118 1035470 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1035540 1036041 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1036099 1036392 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1036630 1037164 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1037230 1037511 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1037573 1037947 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1038137 1038564 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild exon 1038788 1039187 . - . gene_id "RvY_08689"; transcript_id "RvY_08689.1"; Scaffold004 rebuild transcript 1039628 1041963 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1039628 1039822 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1039927 1039976 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1040379 1040470 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1040598 1040775 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1040845 1041076 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1041138 1041231 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1041333 1041772 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild exon 1041856 1041963 . + . gene_id "RvY_08690"; transcript_id "RvY_08690.1"; Scaffold004 rebuild transcript 1042724 1044332 . - . gene_id "RvY_08691"; transcript_id "RvY_08691.1"; gene_name "RKIP"; annotation "hypothetical protein."; Pfam "[PBP] Phosphatidylethanolamine-binding protein"; CDD "eukaryotic Raf Kinase Inhibitor Protein (RKIP) and its bacterial/archael homolog PhosphatidylEthanolamine-Binding Protein (PEBP), belong to a highly conserved family of phospholipid-binding proteins represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea) with no significant sequence homology to other proteins. A number of biological roles for PEBP have been identified including serine protease inhibition, membrane biogenesis, and Raf-1 kinase inhibition. In addition, the mammalian PEBPs are believed to be the precursor of HippoCampal Neurostimulatory Peptide (HCNP), a bioactive peptide comprising the first 12 amino acids of PEBP that plays an important role in hippocampus development. PEBP forms a homodimer and a small cavity within each PEBP monomer is thought to serve as a binding site for the polar head group of phosphatidylethanolamine."; similar_genes "D1_ONCVO(e-value:1.9e-22;bit-score:104.0)"; Scaffold004 rebuild exon 1042724 1042938 . - . gene_id "RvY_08691"; transcript_id "RvY_08691.1"; Scaffold004 rebuild exon 1043033 1043170 . - . gene_id "RvY_08691"; transcript_id "RvY_08691.1"; Scaffold004 rebuild exon 1043935 1044058 . - . gene_id "RvY_08691"; transcript_id "RvY_08691.1"; Scaffold004 rebuild exon 1044165 1044332 . - . gene_id "RvY_08691"; transcript_id "RvY_08691.1"; Scaffold004 rebuild transcript 1045548 1047762 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; gene_name "PRK06148"; annotation "putative Alanine--glyoxylate aminotransferase 2-like 1"; Pfam "[Aminotran_3] Aminotransferase class-III"; CDD "hypothetical protein; Provisional"; EC "EC2.6.1.-"; KO "K14286"; similar_genes "AT2L1_DANRE(e-value:8.2e-34;bit-score:141.0)"; Scaffold004 rebuild exon 1045548 1045648 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1045742 1045860 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1045937 1046171 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1046285 1046366 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1046479 1046699 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1046790 1046930 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1047038 1047116 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1047199 1047353 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1047414 1047503 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild exon 1047573 1047762 . + . gene_id "RvY_08692"; transcript_id "RvY_08692.1"; Scaffold004 rebuild transcript 1048389 1052062 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; annotation "hypothetical protein."; Pfam "[Med25] Mediator complex subunit 25 PTOV activation and synapsin 2|[Med25_VWA] Mediator complex subunit 25 von Willebrand factor type A"; EC "EC2.7.11.-"; KO "K15168"; similar_genes "AK1_DICDI(e-value:8.0e-13;bit-score:72.0)"; Scaffold004 rebuild exon 1048389 1048873 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1049020 1049072 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1049147 1049605 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1049672 1050268 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1050525 1050852 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1050919 1051162 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1051246 1051468 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild exon 1051542 1052062 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.1"; Scaffold004 rebuild transcript 1048389 1052062 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; annotation "hypothetical protein."; Pfam "[Med25] Mediator complex subunit 25 PTOV activation and synapsin 2|[Med25_VWA] Mediator complex subunit 25 von Willebrand factor type A"; EC "EC2.7.11.-"; KO "K15168"; similar_genes "AK1_DICDI(e-value:8.0e-13;bit-score:72.0)"; Scaffold004 rebuild exon 1048389 1048873 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1049020 1049072 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1049147 1049605 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1049672 1050268 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1050528 1050852 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1050919 1051162 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1051246 1051468 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild exon 1051542 1052062 . + . gene_id "RvY_08693"; transcript_id "RvY_08693.2"; Scaffold004 rebuild transcript 1052412 1053804 . - . gene_id "RvY_08694"; transcript_id "RvY_08694.1"; annotation "hypothetical protein."; Pfam "[DUF2362] Uncharacterized conserved protein (DUF2362)"; similar_genes "CL004_PONAB(e-value:8.8e-08;bit-score:55.0)"; Scaffold004 rebuild exon 1052412 1053193 . - . gene_id "RvY_08694"; transcript_id "RvY_08694.1"; Scaffold004 rebuild exon 1053393 1053804 . - . gene_id "RvY_08694"; transcript_id "RvY_08694.1"; Scaffold004 rebuild transcript 1055016 1062898 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 1055016 1055914 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1056084 1057260 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1057340 1057756 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1057863 1058279 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1058565 1058885 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1059256 1060856 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1061080 1062058 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1062223 1062698 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild exon 1062784 1062898 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.1"; Scaffold004 rebuild transcript 1055016 1062898 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 1055016 1055914 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1056087 1057260 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1057340 1057756 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1057863 1058279 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1058565 1058885 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1059256 1060856 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1061080 1062058 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1062223 1062698 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild exon 1062784 1062898 . + . gene_id "RvY_08695"; transcript_id "RvY_08695.2"; Scaffold004 rebuild transcript 1064122 1066735 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1064122 1064209 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.1"; Scaffold004 rebuild exon 1064364 1064559 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.1"; Scaffold004 rebuild exon 1066639 1066735 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.1"; Scaffold004 rebuild transcript 1064122 1064652 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1064122 1064209 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.2"; Scaffold004 rebuild exon 1064364 1064559 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.2"; Scaffold004 rebuild exon 1064634 1064652 . + . gene_id "RvY_08696"; transcript_id "RvY_08696.2"; Scaffold004 rebuild transcript 1067122 1082005 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; gene_name "CSPG4"; annotation "chondroitin sulfate proteoglycan 4"; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain."; KO "K08115"; Scaffold004 rebuild exon 1067122 1067365 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1072780 1073130 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1073603 1073948 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1074013 1074095 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1074171 1074787 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1074881 1075252 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1075497 1076044 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1076215 1076585 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1076653 1077470 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1077536 1077989 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1078169 1078465 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1078559 1079203 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1079443 1079894 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1080059 1080575 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1080785 1081073 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild exon 1081159 1082005 . + . gene_id "RvY_08697"; transcript_id "RvY_08697.1"; Scaffold004 rebuild transcript 1083976 1086132 . + . gene_id "RvY_08698"; transcript_id "RvY_08698.1"; annotation "hypothetical protein."; Pfam "[Reeler]"; Scaffold004 rebuild exon 1083976 1084177 . + . gene_id "RvY_08698"; transcript_id "RvY_08698.1"; Scaffold004 rebuild exon 1084493 1084751 . + . gene_id "RvY_08698"; transcript_id "RvY_08698.1"; Scaffold004 rebuild exon 1085574 1085758 . + . gene_id "RvY_08698"; transcript_id "RvY_08698.1"; Scaffold004 rebuild exon 1085912 1086132 . + . gene_id "RvY_08698"; transcript_id "RvY_08698.1"; Scaffold004 rebuild transcript 1086947 1088988 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; annotation "hypothetical protein."; Pfam "[DUF2003] Eukaryotic protein of unknown function (DUF2003)"; Scaffold004 rebuild exon 1086947 1087117 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1087205 1087303 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1087368 1087396 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1087471 1087601 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1087659 1087753 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1087817 1088060 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1088132 1088269 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1088331 1088581 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1088664 1088834 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild exon 1088905 1088988 . - . gene_id "RvY_08699"; transcript_id "RvY_08699.1"; Scaffold004 rebuild transcript 1089411 1090679 . + . gene_id "RvY_08700"; transcript_id "RvY_08700.1"; annotation "hypothetical protein."; Pfam "[zf-H2C2_5] C2H2-type zinc-finger domain"; Scaffold004 rebuild exon 1089411 1089713 . + . gene_id "RvY_08700"; transcript_id "RvY_08700.1"; Scaffold004 rebuild exon 1089799 1090375 . + . gene_id "RvY_08700"; transcript_id "RvY_08700.1"; Scaffold004 rebuild exon 1090450 1090679 . + . gene_id "RvY_08700"; transcript_id "RvY_08700.1"; Scaffold004 rebuild transcript 1091170 1104097 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; gene_name "WD40"; annotation "putative DmX-like protein 1"; Pfam "[Rav1p_C] RAVE protein 1 C terminal|[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "DMXL1_MOUSE(e-value:2.6e-41;bit-score:166.0)"; Scaffold004 rebuild exon 1091170 1091467 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1091736 1092271 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1092761 1092895 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1092960 1093474 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1093706 1094263 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1094328 1094684 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1094790 1095059 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1095216 1095570 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1095800 1096094 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1096155 1096723 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1096877 1097227 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1097290 1097927 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1098095 1098523 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1098578 1098933 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1099143 1099731 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1099923 1100187 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1100259 1100651 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1100751 1100906 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1100987 1101207 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1101274 1101667 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1101741 1102039 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1102100 1102733 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1102806 1103058 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1103123 1103576 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1103636 1103921 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild exon 1104011 1104097 . - . gene_id "RvY_08701"; transcript_id "RvY_08701.1"; Scaffold004 rebuild transcript 1104993 1108958 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1104993 1105283 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1105344 1105602 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1105668 1105738 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1105840 1106091 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1106324 1107190 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1107299 1107562 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1107627 1107751 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1107823 1108183 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1108262 1108362 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1108417 1108534 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1108618 1108710 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild exon 1108809 1108958 . + . gene_id "RvY_08702"; transcript_id "RvY_08702.1"; Scaffold004 rebuild transcript 1109420 1115566 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold004 rebuild exon 1109420 1109613 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; Scaffold004 rebuild exon 1109679 1109912 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; Scaffold004 rebuild exon 1109981 1110195 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; Scaffold004 rebuild exon 1110276 1110417 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; Scaffold004 rebuild exon 1110487 1110568 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; Scaffold004 rebuild exon 1115309 1115566 . - . gene_id "RvY_08703"; transcript_id "RvY_08703.1"; Scaffold004 rebuild transcript 1111774 1111965 . + . gene_id "RvY_08704"; transcript_id "RvY_08704.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1111774 1111965 . + . gene_id "RvY_08704"; transcript_id "RvY_08704.1"; Scaffold004 rebuild transcript 1112048 1112896 . + . gene_id "RvY_08705"; transcript_id "RvY_08705.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1112048 1112069 . + . gene_id "RvY_08705"; transcript_id "RvY_08705.1"; Scaffold004 rebuild exon 1112164 1112412 . + . gene_id "RvY_08705"; transcript_id "RvY_08705.1"; Scaffold004 rebuild exon 1112548 1112747 . + . gene_id "RvY_08705"; transcript_id "RvY_08705.1"; Scaffold004 rebuild exon 1112891 1112896 . + . gene_id "RvY_08705"; transcript_id "RvY_08705.1"; Scaffold004 rebuild transcript 1115139 1115645 . + . gene_id "RvY_08706"; transcript_id "RvY_08706.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1115139 1115645 . + . gene_id "RvY_08706"; transcript_id "RvY_08706.1"; Scaffold004 rebuild transcript 1116071 1118092 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold004 rebuild exon 1116071 1116494 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1116614 1116677 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1116754 1116816 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1116903 1117011 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1117071 1117170 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1117254 1117340 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1117407 1117793 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild exon 1117866 1118092 . + . gene_id "RvY_08707"; transcript_id "RvY_08707.1"; Scaffold004 rebuild transcript 1118353 1119779 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; gene_name "FabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.184"; similar_genes "CBR1_RAT(e-value:4.0e-10;bit-score:63.0)"; Scaffold004 rebuild exon 1118353 1118607 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild exon 1118683 1118827 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild exon 1118888 1119019 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild exon 1119086 1119225 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild exon 1119319 1119497 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild exon 1119578 1119659 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild exon 1119744 1119779 . - . gene_id "RvY_08708"; transcript_id "RvY_08708.1"; Scaffold004 rebuild transcript 1120512 1121016 . + . gene_id "RvY_08709"; transcript_id "RvY_08709.1"; gene_name "PRK06935"; annotation "hypothetical protein."; Pfam "[adh_short] short chain dehydrogenase"; CDD "2-deoxy-D-gluconate 3-dehydrogenase; Provisional"; Scaffold004 rebuild exon 1120512 1120553 . + . gene_id "RvY_08709"; transcript_id "RvY_08709.1"; Scaffold004 rebuild exon 1120819 1121016 . + . gene_id "RvY_08709"; transcript_id "RvY_08709.1"; Scaffold004 rebuild transcript 1121299 1121939 . + . gene_id "RvY_08710"; transcript_id "RvY_08710.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1121299 1121408 . + . gene_id "RvY_08710"; transcript_id "RvY_08710.1"; Scaffold004 rebuild exon 1121472 1121616 . + . gene_id "RvY_08710"; transcript_id "RvY_08710.1"; Scaffold004 rebuild exon 1121700 1121939 . + . gene_id "RvY_08710"; transcript_id "RvY_08710.1"; Scaffold004 rebuild transcript 1123551 1124802 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.1"; gene_name "3a01204"; annotation "(1)putative Protein white(2)hypothetical protein."; Pfam "[ABC2_membrane] ABC-2 type transporter|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; similar_genes "(1)WHITE_LUCCU(e-value:2.3e-29;bit-score:127.0)"; Scaffold004 rebuild exon 1123551 1123724 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.1"; Scaffold004 rebuild exon 1123859 1123939 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.1"; Scaffold004 rebuild exon 1124013 1124312 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.1"; Scaffold004 rebuild exon 1124395 1124701 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.1"; Scaffold004 rebuild exon 1124774 1124802 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.1"; Scaffold004 rebuild transcript 1122633 1123575 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.2"; gene_name "3a01204"; annotation "(1)putative Protein white(2)hypothetical protein."; Pfam "[ABC2_membrane] ABC-2 type transporter|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; similar_genes "(1)WHITE_LUCCU(e-value:2.3e-29;bit-score:127.0)"; Scaffold004 rebuild exon 1122633 1122693 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.2"; Scaffold004 rebuild exon 1122758 1122935 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.2"; Scaffold004 rebuild exon 1123019 1123237 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.2"; Scaffold004 rebuild exon 1123322 1123420 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.2"; Scaffold004 rebuild exon 1123551 1123575 . + . gene_id "RvY_08711"; transcript_id "RvY_08711.2"; Scaffold004 rebuild transcript 1125023 1125486 . + . gene_id "RvY_08712"; transcript_id "RvY_08712.1"; gene_name "3a01204"; annotation "hypothetical protein."; Pfam "[ABC2_membrane] ABC-2 type transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; Scaffold004 rebuild exon 1125023 1125183 . + . gene_id "RvY_08712"; transcript_id "RvY_08712.1"; Scaffold004 rebuild exon 1125333 1125486 . + . gene_id "RvY_08712"; transcript_id "RvY_08712.1"; Scaffold004 rebuild transcript 1125660 1125869 . + . gene_id "RvY_08713"; transcript_id "RvY_08713.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1125660 1125869 . + . gene_id "RvY_08713"; transcript_id "RvY_08713.1"; Scaffold004 rebuild transcript 1126066 1126257 . + . gene_id "RvY_08714"; transcript_id "RvY_08714.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1126066 1126257 . + . gene_id "RvY_08714"; transcript_id "RvY_08714.1"; Scaffold004 rebuild transcript 1130855 1131851 . - . gene_id "RvY_08715"; transcript_id "RvY_08715.1"; annotation "hypothetical protein."; Pfam "[UPF0240] Uncharacterised protein family (UPF0240)"; Scaffold004 rebuild exon 1130855 1131418 . - . gene_id "RvY_08715"; transcript_id "RvY_08715.1"; Scaffold004 rebuild exon 1131479 1131603 . - . gene_id "RvY_08715"; transcript_id "RvY_08715.1"; Scaffold004 rebuild exon 1131683 1131851 . - . gene_id "RvY_08715"; transcript_id "RvY_08715.1"; Scaffold004 rebuild transcript 1132647 1136153 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; annotation "putative Probable ribonuclease ZC3H12C"; Pfam "[RNase_Zc3h12a] Zc3h12a-like Ribonuclease NYN domain"; EC "EC3.1.-.-"; similar_genes "ZC12C_HUMAN(e-value:1.5e-41;bit-score:167.0)"; Scaffold004 rebuild exon 1132647 1132931 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; Scaffold004 rebuild exon 1133706 1134145 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; Scaffold004 rebuild exon 1134220 1134359 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; Scaffold004 rebuild exon 1134458 1134692 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; Scaffold004 rebuild exon 1134783 1135102 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; Scaffold004 rebuild exon 1135345 1136153 . + . gene_id "RvY_08716"; transcript_id "RvY_08716.1"; Scaffold004 rebuild transcript 1136995 1137875 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.1"; gene_name "(2)RPB9"; annotation "(1)hypothetical protein.(2)DNA-directed RNA polymerase II subunit RPB9"; Pfam "(2)[TFIIS_C] Transcription factor S-II (TFIIS)|[RNA_POL_M_15KD] RNA polymerases M/15 Kd subunit"; CDD "(2)DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]"; KO "(2)K03017"; similar_genes "(1)RPB9_DROME(e-value:1.1e-20;bit-score:98.0)(2)RPB9_DROME(e-value:2.5e-52;bit-score:203.0)"; Scaffold004 rebuild exon 1136995 1137092 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.1"; Scaffold004 rebuild exon 1137165 1137219 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.1"; Scaffold004 rebuild exon 1137427 1137500 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.1"; Scaffold004 rebuild exon 1137608 1137705 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.1"; Scaffold004 rebuild exon 1137778 1137875 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.1"; Scaffold004 rebuild transcript 1136995 1137840 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.2"; gene_name "(2)RPB9"; annotation "(1)hypothetical protein.(2)DNA-directed RNA polymerase II subunit RPB9"; Pfam "(2)[TFIIS_C] Transcription factor S-II (TFIIS)|[RNA_POL_M_15KD] RNA polymerases M/15 Kd subunit"; CDD "(2)DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]"; KO "(2)K03017"; similar_genes "(1)RPB9_DROME(e-value:1.1e-20;bit-score:98.0)(2)RPB9_DROME(e-value:2.5e-52;bit-score:203.0)"; Scaffold004 rebuild exon 1136995 1137092 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.2"; Scaffold004 rebuild exon 1137165 1137219 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.2"; Scaffold004 rebuild exon 1137427 1137500 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.2"; Scaffold004 rebuild exon 1137579 1137705 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.2"; Scaffold004 rebuild exon 1137778 1137840 . + . gene_id "RvY_08717"; transcript_id "RvY_08717.2"; Scaffold004 rebuild transcript 1139135 1144377 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 1139135 1139163 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1139542 1139584 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1139682 1139735 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1139812 1139892 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1139956 1140019 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1140095 1140177 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1140264 1140605 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1140670 1140867 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1140936 1141013 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1141097 1141189 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1141282 1141356 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1141426 1141602 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1141676 1141852 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1141918 1142098 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1142204 1142431 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1142494 1142740 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1142931 1143690 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild exon 1144099 1144377 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.1"; Scaffold004 rebuild transcript 1139146 1144377 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 1139146 1139163 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1139682 1139735 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1139812 1139892 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1139956 1140019 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1140095 1140177 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1140264 1140605 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1140670 1140867 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1140936 1141013 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1141097 1141189 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1141282 1141356 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1141426 1141602 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1141676 1141852 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1141918 1142098 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1142204 1142431 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1142494 1142740 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1142931 1143690 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild exon 1144099 1144377 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.2"; Scaffold004 rebuild transcript 1139725 1144377 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 1139725 1139739 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1139812 1139892 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1139956 1140019 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1140095 1140177 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1140264 1140605 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1140670 1140867 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1140936 1141013 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1141097 1141189 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1141282 1141356 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1141426 1141602 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1141676 1141852 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1141918 1142098 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1142204 1142431 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1142494 1142740 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1142931 1143690 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild exon 1144099 1144377 . - . gene_id "RvY_08718"; transcript_id "RvY_08718.3"; Scaffold004 rebuild transcript 1145982 1151833 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; gene_name "(1)CREB3"; annotation "(1)putative Cyclic AMP-responsive element-binding protein 3-like protein 2(2)hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; CDD "(1)basic region leucin zipper."; KO "(1)K09048"; similar_genes "(1)CR3L2_MOUSE(e-value:1.2e-32;bit-score:137.0)"; Scaffold004 rebuild exon 1145982 1145990 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1146056 1146152 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1146234 1146302 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1146380 1146438 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1146514 1146663 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1146731 1147134 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1147755 1147968 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild exon 1151753 1151833 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.1"; Scaffold004 rebuild transcript 1145484 1146288 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.2"; gene_name "(1)CREB3"; annotation "(1)putative Cyclic AMP-responsive element-binding protein 3-like protein 2(2)hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper"; CDD "(1)basic region leucin zipper."; KO "(1)K09048"; similar_genes "(1)CR3L2_MOUSE(e-value:1.2e-32;bit-score:137.0)"; Scaffold004 rebuild exon 1145484 1145666 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.2"; Scaffold004 rebuild exon 1145738 1145990 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.2"; Scaffold004 rebuild exon 1146056 1146152 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.2"; Scaffold004 rebuild exon 1146234 1146288 . - . gene_id "RvY_08719"; transcript_id "RvY_08719.2"; Scaffold004 rebuild transcript 1152005 1153784 . + . gene_id "RvY_08720"; transcript_id "RvY_08720.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1152005 1152187 . + . gene_id "RvY_08720"; transcript_id "RvY_08720.1"; Scaffold004 rebuild exon 1153683 1153784 . + . gene_id "RvY_08720"; transcript_id "RvY_08720.1"; Scaffold004 rebuild transcript 1155383 1156517 . - . gene_id "RvY_08721"; transcript_id "RvY_08721.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[DDE_3] DDE superfamily endonuclease"; Scaffold004 rebuild exon 1155383 1155930 . - . gene_id "RvY_08721"; transcript_id "RvY_08721.1"; Scaffold004 rebuild exon 1156142 1156235 . - . gene_id "RvY_08721"; transcript_id "RvY_08721.1"; Scaffold004 rebuild exon 1156422 1156517 . - . gene_id "RvY_08721"; transcript_id "RvY_08721.1"; Scaffold004 rebuild transcript 1159983 1160159 . + . gene_id "RvY_08722"; transcript_id "RvY_08722.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1159983 1160159 . + . gene_id "RvY_08722"; transcript_id "RvY_08722.1"; Scaffold004 rebuild transcript 1160206 1163160 . + . gene_id "RvY_08723"; transcript_id "RvY_08723.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold004 rebuild exon 1160206 1160531 . + . gene_id "RvY_08723"; transcript_id "RvY_08723.1"; Scaffold004 rebuild exon 1160619 1160724 . + . gene_id "RvY_08723"; transcript_id "RvY_08723.1"; Scaffold004 rebuild exon 1161449 1162138 . + . gene_id "RvY_08723"; transcript_id "RvY_08723.1"; Scaffold004 rebuild exon 1162203 1162349 . + . gene_id "RvY_08723"; transcript_id "RvY_08723.1"; Scaffold004 rebuild exon 1163029 1163160 . + . gene_id "RvY_08723"; transcript_id "RvY_08723.1"; Scaffold004 rebuild transcript 1162667 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; gene_name "(1,2,3)KLC(4)Rab5-bind"; annotation "(1,2,3)Kinesin light chain(4)Kinesin light chain 1"; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|(1,4)[PPR] PPR repeat|[Rab5-bind] Rabaptin-like protein|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_7] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Rab5 binding. Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes."; KO "(1,2,3)K10407"; similar_genes "(1,2,3)KLC_CAEEL(e-value:2.3e-112;bit-score:402.0)(4)KLC1_HUMAN(e-value:2.1e-104;bit-score:376.0)"; Scaffold004 rebuild exon 1162667 1162727 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1162970 1163130 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1164294 1164377 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1164494 1164602 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1165233 1165324 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1165463 1165509 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1165587 1165686 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1165760 1165933 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1166023 1166124 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1166224 1166311 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1166453 1166681 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1166805 1166904 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1166993 1167217 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild exon 1167280 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.1"; Scaffold004 rebuild transcript 1165041 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; gene_name "(1,2,3)KLC(4)Rab5-bind"; annotation "(1,2,3)Kinesin light chain(4)Kinesin light chain 1"; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|(1,4)[PPR] PPR repeat|[Rab5-bind] Rabaptin-like protein|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_7] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Rab5 binding. Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes."; KO "(1,2,3)K10407"; similar_genes "(1,2,3)KLC_CAEEL(e-value:2.3e-112;bit-score:402.0)(4)KLC1_HUMAN(e-value:2.1e-104;bit-score:376.0)"; Scaffold004 rebuild exon 1165041 1165044 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1165233 1165509 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1165587 1165686 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1165760 1165933 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1166023 1166124 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1166224 1166311 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1166453 1166681 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1166805 1166904 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1166993 1167217 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild exon 1167280 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.2"; Scaffold004 rebuild transcript 1165041 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; gene_name "(1,2,3)KLC(4)Rab5-bind"; annotation "(1,2,3)Kinesin light chain(4)Kinesin light chain 1"; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|(1,4)[PPR] PPR repeat|[Rab5-bind] Rabaptin-like protein|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_7] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Rab5 binding. Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes."; KO "(1,2,3)K10407"; similar_genes "(1,2,3)KLC_CAEEL(e-value:2.3e-112;bit-score:402.0)(4)KLC1_HUMAN(e-value:2.1e-104;bit-score:376.0)"; Scaffold004 rebuild exon 1165041 1165044 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1165233 1165324 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1165463 1165509 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1165587 1165686 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1165760 1165933 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1166023 1166124 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1166224 1166311 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1166453 1166681 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1166805 1166904 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1166993 1167217 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild exon 1167280 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.3"; Scaffold004 rebuild transcript 1165579 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; gene_name "(1,2,3)KLC(4)Rab5-bind"; annotation "(1,2,3)Kinesin light chain(4)Kinesin light chain 1"; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|(1,4)[PPR] PPR repeat|[Rab5-bind] Rabaptin-like protein|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_7] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Rab5 binding. Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes."; KO "(1,2,3)K10407"; similar_genes "(1,2,3)KLC_CAEEL(e-value:2.3e-112;bit-score:402.0)(4)KLC1_HUMAN(e-value:2.1e-104;bit-score:376.0)"; Scaffold004 rebuild exon 1165579 1165686 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1165760 1165933 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1166023 1166124 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1166224 1166311 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1166453 1166681 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1166805 1166904 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1166993 1167217 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild exon 1167280 1167540 . - . gene_id "RvY_08724"; transcript_id "RvY_08724.4"; Scaffold004 rebuild transcript 1169201 1170730 . + . gene_id "RvY_08725"; transcript_id "RvY_08725.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1169201 1169222 . + . gene_id "RvY_08725"; transcript_id "RvY_08725.1"; Scaffold004 rebuild exon 1170441 1170730 . + . gene_id "RvY_08725"; transcript_id "RvY_08725.1"; Scaffold004 rebuild transcript 1170863 1172935 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; gene_name "eIF-5"; annotation "Eukaryotic translation initiation factor 5"; Pfam "[W2] eIF4-gamma/eIF5/eIF2-epsilon|[eIF-5_eIF-2B] Domain found in IF2B/IF5"; KO "K03262"; similar_genes "IF5_HUMAN(e-value:2.8e-53;bit-score:206.0)"; Scaffold004 rebuild exon 1170863 1170934 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild exon 1171003 1171084 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild exon 1171166 1171338 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild exon 1171411 1171896 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild exon 1172091 1172246 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild exon 1172340 1172507 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild exon 1172621 1172935 . + . gene_id "RvY_08726"; transcript_id "RvY_08726.1"; Scaffold004 rebuild transcript 1174159 1174671 . - . gene_id "RvY_08727"; transcript_id "RvY_08727.1"; gene_name "PPP3R"; annotation "Calcineurin subunit B type 2"; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand_3] Cytoskeletal-regulatory complex EF hand|[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; KO "K06268"; similar_genes "CANB2_DROME(e-value:1.6e-83;bit-score:307.0)"; Scaffold004 rebuild exon 1174159 1174671 . - . gene_id "RvY_08727"; transcript_id "RvY_08727.1"; Scaffold004 rebuild transcript 1177149 1182355 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; gene_name "RECQL5"; annotation "putative ATP-dependent DNA helicase Q5"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10902"; similar_genes "RECQ5_HUMAN(e-value:6.9e-29;bit-score:125.0)"; Scaffold004 rebuild exon 1177149 1177225 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1177317 1177387 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1177454 1177477 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1177556 1178145 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1178209 1178311 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1178394 1178466 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1178544 1178604 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1178739 1178870 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1178949 1179031 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1179120 1179356 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1180286 1180597 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1181128 1181466 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild exon 1181731 1182355 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.1"; Scaffold004 rebuild transcript 1177149 1182355 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; gene_name "RECQL5"; annotation "putative ATP-dependent DNA helicase Q5"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10902"; similar_genes "RECQ5_HUMAN(e-value:6.9e-29;bit-score:125.0)"; Scaffold004 rebuild exon 1177149 1177225 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1177317 1177387 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1177454 1177477 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1177556 1178145 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1178209 1178311 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1178394 1178466 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1178544 1178604 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1178739 1178870 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1178949 1179031 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1179120 1179356 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild exon 1181731 1182355 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.2"; Scaffold004 rebuild transcript 1177149 1179378 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; gene_name "RECQL5"; annotation "putative ATP-dependent DNA helicase Q5"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10902"; similar_genes "RECQ5_HUMAN(e-value:6.9e-29;bit-score:125.0)"; Scaffold004 rebuild exon 1177149 1177225 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1177317 1177387 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1177454 1177477 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1177556 1178145 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1178209 1178311 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1178394 1178466 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1178544 1178604 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1178739 1178870 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1178949 1179031 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild exon 1179120 1179378 . + . gene_id "RvY_08728"; transcript_id "RvY_08728.3"; Scaffold004 rebuild transcript 1182936 1188628 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[PLAC] PLAC (protease and lacunin) domain|[TSP_1] Thrombospondin type 1 domain"; similar_genes "ATL3_HUMAN(e-value:1.4e-14;bit-score:78.0)"; Scaffold004 rebuild exon 1182936 1183045 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1183131 1183281 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1183354 1183542 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1183620 1183775 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1183874 1184740 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1184807 1185391 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1185612 1186663 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1187467 1187614 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1187698 1188195 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild exon 1188551 1188628 . - . gene_id "RvY_08729"; transcript_id "RvY_08729.1"; Scaffold004 rebuild transcript 1190595 1192303 . + . gene_id "RvY_08730"; transcript_id "RvY_08730.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1190595 1190636 . + . gene_id "RvY_08730"; transcript_id "RvY_08730.1"; Scaffold004 rebuild exon 1191404 1191542 . + . gene_id "RvY_08730"; transcript_id "RvY_08730.1"; Scaffold004 rebuild exon 1192152 1192303 . + . gene_id "RvY_08730"; transcript_id "RvY_08730.1"; Scaffold004 rebuild transcript 1192940 1195202 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; gene_name "(1,2)PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "(1,2)[TPR_16] Tetratricopeptide repeat|(1,2)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1,2)[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|(1,2)[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|(1,2)[TPR_6] Tetratricopeptide repeat|(1,2)[TPR_8] Tetratricopeptide repeat"; CDD "(1,2)putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold004 rebuild exon 1192940 1193393 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1193496 1193611 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1193683 1193833 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1193897 1194005 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1194076 1194192 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1194286 1194355 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1194431 1194523 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1194595 1194697 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1194799 1194882 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild exon 1194979 1195202 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.1"; Scaffold004 rebuild transcript 1192687 1194520 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; gene_name "(1,2)PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "(1,2)[TPR_16] Tetratricopeptide repeat|(1,2)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1,2)[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|(1,2)[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|(1,2)[TPR_6] Tetratricopeptide repeat|(1,2)[TPR_8] Tetratricopeptide repeat"; CDD "(1,2)putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold004 rebuild exon 1192687 1192826 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1192920 1193192 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1193275 1193393 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1193496 1193611 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1193683 1193833 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1193897 1194005 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1194076 1194192 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1194286 1194355 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild exon 1194431 1194520 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.2"; Scaffold004 rebuild transcript 1194795 1196156 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; gene_name "(1,2)PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "(1,2)[TPR_16] Tetratricopeptide repeat|(1,2)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1,2)[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|(1,2)[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|(1,2)[TPR_6] Tetratricopeptide repeat|(1,2)[TPR_8] Tetratricopeptide repeat"; CDD "(1,2)putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold004 rebuild exon 1194795 1194882 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild exon 1194979 1195278 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild exon 1195337 1195451 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild exon 1195519 1195630 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild exon 1195693 1195800 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild exon 1195872 1195962 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild exon 1196104 1196156 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.3"; Scaffold004 rebuild transcript 1193687 1194932 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; gene_name "(1,2)PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "(1,2)[TPR_16] Tetratricopeptide repeat|(1,2)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1,2)[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|(1,2)[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|(1,2)[TPR_6] Tetratricopeptide repeat|(1,2)[TPR_8] Tetratricopeptide repeat"; CDD "(1,2)putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold004 rebuild exon 1193687 1193833 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; Scaffold004 rebuild exon 1193897 1194192 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; Scaffold004 rebuild exon 1194286 1194355 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; Scaffold004 rebuild exon 1194431 1194523 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; Scaffold004 rebuild exon 1194595 1194697 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; Scaffold004 rebuild exon 1194799 1194932 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.4"; Scaffold004 rebuild transcript 1194975 1196156 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; gene_name "(1,2)PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "(1,2)[TPR_16] Tetratricopeptide repeat|(1,2)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1,2)[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|(1,2)[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|(1,2)[TPR_6] Tetratricopeptide repeat|(1,2)[TPR_8] Tetratricopeptide repeat"; CDD "(1,2)putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold004 rebuild exon 1194975 1195278 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; Scaffold004 rebuild exon 1195337 1195451 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; Scaffold004 rebuild exon 1195519 1195630 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; Scaffold004 rebuild exon 1195693 1195800 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; Scaffold004 rebuild exon 1195872 1195962 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; Scaffold004 rebuild exon 1196104 1196156 . - . gene_id "RvY_08731"; transcript_id "RvY_08731.5"; Scaffold004 rebuild transcript 1196778 1197429 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1196778 1196924 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.1"; Scaffold004 rebuild exon 1197023 1197079 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.1"; Scaffold004 rebuild exon 1197139 1197252 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.1"; Scaffold004 rebuild exon 1197328 1197429 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.1"; Scaffold004 rebuild transcript 1196624 1197188 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1196624 1196924 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.2"; Scaffold004 rebuild exon 1197023 1197079 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.2"; Scaffold004 rebuild exon 1197139 1197188 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.2"; Scaffold004 rebuild transcript 1196942 1197429 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1196942 1197079 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.3"; Scaffold004 rebuild exon 1197139 1197252 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.3"; Scaffold004 rebuild exon 1197328 1197429 . - . gene_id "RvY_08732"; transcript_id "RvY_08732.3"; Scaffold004 rebuild transcript 1197925 1198474 . - . gene_id "RvY_08733"; transcript_id "RvY_08733.1"; gene_name "HLH"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; Scaffold004 rebuild exon 1197925 1198179 . - . gene_id "RvY_08733"; transcript_id "RvY_08733.1"; Scaffold004 rebuild exon 1198277 1198474 . - . gene_id "RvY_08733"; transcript_id "RvY_08733.1"; Scaffold004 rebuild transcript 1199387 1202464 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; gene_name "GP4d_helicase"; annotation "putative Twinkle protein, mitochondrial"; Pfam "[AAA_22] AAA domain|[AAA_25] AAA domain|[DnaB_C] DnaB-like helicase C terminal domain|[KaiC]"; CDD "GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands."; EC "EC3.6.1.-"; similar_genes "PEO1_HUMAN(e-value:1.1e-31;bit-score:134.0)"; Scaffold004 rebuild exon 1199387 1199827 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1200044 1200235 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1200312 1200426 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1200494 1200567 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1200637 1200771 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1200844 1201015 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1201121 1201245 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1201313 1201472 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1201538 1201707 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1201779 1201920 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild exon 1202022 1202464 . - . gene_id "RvY_08734"; transcript_id "RvY_08734.1"; Scaffold004 rebuild transcript 1203011 1210855 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; gene_name "RPA1"; annotation "DNA-directed RNA polymerase I subunit RPA1"; Pfam "[RNA_pol_Rpb1_1] RNA polymerase Rpb1, domain 1|[RNA_pol_Rpb1_4] RNA polymerase Rpb1, domain 4|[RNA_pol_Rpb1_3] RNA polymerase Rpb1, domain 3|[RNA_pol_Rpb1_2] RNA polymerase Rpb1, domain 2|[RNA_pol_Rpb1_5] RNA polymerase Rpb1, domain 5"; CDD "DNA-directed RNA polymerase subunit alpha; Validated"; EC "EC2.7.7.6"; KO "K02999"; similar_genes "RPA1_MOUSE(e-value:1.0e-63;bit-score:241.0)"; Scaffold004 rebuild exon 1203011 1203182 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1203247 1203374 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1203436 1203655 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1203737 1204097 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1204163 1204241 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1204346 1204513 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1204592 1204729 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1204802 1204942 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1205023 1205243 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1205344 1205563 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1205631 1205769 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1205836 1206065 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1206140 1206223 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1206291 1206476 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1206553 1206669 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1206749 1206963 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1207025 1207109 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1207293 1207493 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1207552 1207680 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1207758 1207919 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1207980 1208119 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1208374 1208904 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1208971 1209135 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1209331 1209656 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1209752 1209861 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1209954 1210298 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1210498 1210690 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild exon 1210752 1210855 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.1"; Scaffold004 rebuild transcript 1202380 1209909 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; gene_name "RPA1"; annotation "DNA-directed RNA polymerase I subunit RPA1"; Pfam "[RNA_pol_Rpb1_1] RNA polymerase Rpb1, domain 1|[RNA_pol_Rpb1_4] RNA polymerase Rpb1, domain 4|[RNA_pol_Rpb1_3] RNA polymerase Rpb1, domain 3|[RNA_pol_Rpb1_2] RNA polymerase Rpb1, domain 2|[RNA_pol_Rpb1_5] RNA polymerase Rpb1, domain 5"; CDD "DNA-directed RNA polymerase subunit alpha; Validated"; EC "EC2.7.7.6"; KO "K02999"; similar_genes "RPA1_MOUSE(e-value:1.0e-63;bit-score:241.0)"; Scaffold004 rebuild exon 1202380 1202655 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1202906 1203182 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1203247 1203374 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1203436 1203655 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1203737 1204097 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1204163 1204241 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1204346 1204513 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1204592 1204729 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1204802 1204942 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1205023 1205243 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1205344 1205563 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1205631 1205769 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1205836 1206065 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1206140 1206223 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1206291 1206476 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1206553 1206669 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1206749 1206963 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1207025 1207109 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1207293 1207493 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1207552 1207680 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1207758 1207919 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1207980 1208119 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1208374 1208904 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1208971 1209135 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1209331 1209656 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild exon 1209752 1209909 . + . gene_id "RvY_08735"; transcript_id "RvY_08735.2"; Scaffold004 rebuild transcript 1211480 1213875 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; gene_name "(1)CNGA3"; annotation "(1)Cyclic nucleotide-gated cation channel(2)hypothetical protein."; Pfam "(1)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K04950"; similar_genes "(1)CNG_ICTPU(e-value:9.6e-54;bit-score:208.0)(2)CNGA1_MOUSE(e-value:1.8e-14;bit-score:77.0)"; Scaffold004 rebuild exon 1211480 1211682 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; Scaffold004 rebuild exon 1211814 1212282 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; Scaffold004 rebuild exon 1212464 1212773 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; Scaffold004 rebuild exon 1212850 1212932 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; Scaffold004 rebuild exon 1213002 1213220 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; Scaffold004 rebuild exon 1213282 1213875 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.1"; Scaffold004 rebuild transcript 1211480 1213253 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.2"; gene_name "(1)CNGA3"; annotation "(1)Cyclic nucleotide-gated cation channel(2)hypothetical protein."; Pfam "(1)[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K04950"; similar_genes "(1)CNG_ICTPU(e-value:9.6e-54;bit-score:208.0)(2)CNGA1_MOUSE(e-value:1.8e-14;bit-score:77.0)"; Scaffold004 rebuild exon 1211480 1211682 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.2"; Scaffold004 rebuild exon 1211814 1212282 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.2"; Scaffold004 rebuild exon 1212464 1212773 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.2"; Scaffold004 rebuild exon 1212850 1212932 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.2"; Scaffold004 rebuild exon 1213002 1213253 . + . gene_id "RvY_08736"; transcript_id "RvY_08736.2"; Scaffold004 rebuild transcript 1214717 1216087 . + . gene_id "RvY_08737"; transcript_id "RvY_08737.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1214717 1214832 . + . gene_id "RvY_08737"; transcript_id "RvY_08737.1"; Scaffold004 rebuild exon 1214902 1215784 . + . gene_id "RvY_08737"; transcript_id "RvY_08737.1"; Scaffold004 rebuild exon 1215983 1216087 . + . gene_id "RvY_08737"; transcript_id "RvY_08737.1"; Scaffold004 rebuild transcript 1216647 1219821 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "SYT15_HUMAN(e-value:1.1e-18;bit-score:91.0)"; Scaffold004 rebuild exon 1216647 1216792 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1216858 1217037 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1217097 1217151 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1217205 1217276 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1217335 1217599 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1217688 1217898 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1218226 1218467 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1219529 1219726 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild exon 1219814 1219821 . - . gene_id "RvY_08738"; transcript_id "RvY_08738.1"; Scaffold004 rebuild transcript 1220362 1221618 . - . gene_id "RvY_08739"; transcript_id "RvY_08739.1"; annotation "hypothetical protein."; Pfam "[WW]"; similar_genes "SAV1_MOUSE(e-value:1.5e-07;bit-score:54.0)"; Scaffold004 rebuild exon 1220362 1221618 . - . gene_id "RvY_08739"; transcript_id "RvY_08739.1"; Scaffold004 rebuild transcript 1222235 1223220 . + . gene_id "RvY_08740"; transcript_id "RvY_08740.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1222235 1222516 . + . gene_id "RvY_08740"; transcript_id "RvY_08740.1"; Scaffold004 rebuild exon 1223158 1223220 . + . gene_id "RvY_08740"; transcript_id "RvY_08740.1"; Scaffold004 rebuild transcript 1223871 1225691 . + . gene_id "RvY_08741"; transcript_id "RvY_08741.1"; annotation "hypothetical protein."; Pfam "[Perilipin] Perilipin family"; Scaffold004 rebuild exon 1223871 1224168 . + . gene_id "RvY_08741"; transcript_id "RvY_08741.1"; Scaffold004 rebuild exon 1224320 1224414 . + . gene_id "RvY_08741"; transcript_id "RvY_08741.1"; Scaffold004 rebuild exon 1224818 1225085 . + . gene_id "RvY_08741"; transcript_id "RvY_08741.1"; Scaffold004 rebuild exon 1225162 1225691 . + . gene_id "RvY_08741"; transcript_id "RvY_08741.1"; Scaffold004 rebuild transcript 1227266 1227895 . + . gene_id "RvY_08742"; transcript_id "RvY_08742.1"; gene_name "Erg28"; annotation "hypothetical protein."; Pfam "[Erg28] Erg28 like protein"; CDD "Erg28 like protein. This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In S. cerevisiae they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins. The family contains a conserved arginine and histidine that may be functionally important."; Scaffold004 rebuild exon 1227266 1227895 . + . gene_id "RvY_08742"; transcript_id "RvY_08742.1"; Scaffold004 rebuild transcript 1229377 1230783 . - . gene_id "RvY_08743"; transcript_id "RvY_08743.1"; gene_name "CSRP"; annotation "putative Muscle LIM protein 1"; Pfam "[LIM]"; KO "K09377"; similar_genes "MLP1_DROME(e-value:1.2e-32;bit-score:137.0)"; Scaffold004 rebuild exon 1229377 1229407 . - . gene_id "RvY_08743"; transcript_id "RvY_08743.1"; Scaffold004 rebuild exon 1230321 1230495 . - . gene_id "RvY_08743"; transcript_id "RvY_08743.1"; Scaffold004 rebuild exon 1230669 1230783 . - . gene_id "RvY_08743"; transcript_id "RvY_08743.1"; Scaffold004 rebuild transcript 1231136 1231318 . + . gene_id "RvY_08744"; transcript_id "RvY_08744.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1231136 1231318 . + . gene_id "RvY_08744"; transcript_id "RvY_08744.1"; Scaffold004 rebuild transcript 1232929 1233303 . + . gene_id "RvY_08745"; transcript_id "RvY_08745.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1232929 1233303 . + . gene_id "RvY_08745"; transcript_id "RvY_08745.1"; Scaffold004 rebuild transcript 1233394 1235387 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; annotation "putative Cell cycle control protein 50C"; Pfam "[CDC50] LEM3 (ligand-effect modulator 3) family / CDC50 family"; similar_genes "CC50C_MACFA(e-value:1.3e-27;bit-score:121.0)"; Scaffold004 rebuild exon 1233394 1233442 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1233607 1233772 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1233860 1234084 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1234164 1234322 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1234385 1234625 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1234690 1234833 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1234895 1235028 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild exon 1235282 1235387 . - . gene_id "RvY_08746"; transcript_id "RvY_08746.1"; Scaffold004 rebuild transcript 1236452 1237806 . + . gene_id "RvY_08747"; transcript_id "RvY_08747.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1236452 1236886 . + . gene_id "RvY_08747"; transcript_id "RvY_08747.1"; Scaffold004 rebuild exon 1237027 1237806 . + . gene_id "RvY_08747"; transcript_id "RvY_08747.1"; Scaffold004 rebuild transcript 1238853 1239734 . - . gene_id "RvY_08748"; transcript_id "RvY_08748.1"; annotation "hypothetical protein."; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain"; KO "K14165"; Scaffold004 rebuild exon 1238853 1239191 . - . gene_id "RvY_08748"; transcript_id "RvY_08748.1"; Scaffold004 rebuild exon 1239261 1239734 . - . gene_id "RvY_08748"; transcript_id "RvY_08748.1"; Scaffold004 rebuild transcript 1240129 1240854 . + . gene_id "RvY_08749"; transcript_id "RvY_08749.1"; gene_name "UMP_CMP_kin_fam"; annotation "putative UMP-CMP kinase"; Pfam "[ADK] Adenylate kinase|[AAA_18] AAA domain|[AAA_17] AAA domain|[Zeta_toxin] Zeta toxin|[AAA_33] AAA domain"; CDD "UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic."; EC "EC2.7.4.14"; KO "K13800"; similar_genes "KCY_XENLA(e-value:1.5e-26;bit-score:117.0)"; Scaffold004 rebuild exon 1240129 1240854 . + . gene_id "RvY_08749"; transcript_id "RvY_08749.1"; Scaffold004 rebuild transcript 1241277 1245590 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; gene_name "SREBP1"; annotation "sterol regulatory element-binding transcription factor 1"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K07197"; similar_genes "SRBP1_CRIGR(e-value:1.2e-17;bit-score:88.0)"; Scaffold004 rebuild exon 1241277 1241435 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1241686 1241827 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1241940 1242096 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1242202 1242299 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1242362 1242458 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1242571 1242733 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1242847 1243290 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1243379 1243744 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1243825 1243982 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1244057 1244171 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1244378 1244776 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1244836 1245392 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild exon 1245560 1245590 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.1"; Scaffold004 rebuild transcript 1241277 1245590 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; gene_name "SREBP1"; annotation "sterol regulatory element-binding transcription factor 1"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K07197"; similar_genes "SRBP1_CRIGR(e-value:1.2e-17;bit-score:88.0)"; Scaffold004 rebuild exon 1241277 1241435 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1241686 1241827 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1241940 1242090 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1242202 1242299 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1242362 1242458 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1242571 1242733 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1242847 1243290 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1243379 1243744 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1243825 1243982 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1244057 1244171 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1244378 1244776 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1244836 1245392 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild exon 1245560 1245590 . - . gene_id "RvY_08750"; transcript_id "RvY_08750.2"; Scaffold004 rebuild transcript 1246540 1246866 . - . gene_id "RvY_08751"; transcript_id "RvY_08751.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1246540 1246866 . - . gene_id "RvY_08751"; transcript_id "RvY_08751.1"; Scaffold004 rebuild transcript 1246521 1246826 . - . gene_id "RvY_08751"; transcript_id "RvY_08751.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1246521 1246826 . - . gene_id "RvY_08751"; transcript_id "RvY_08751.2"; Scaffold004 rebuild transcript 1246998 1247957 . + . gene_id "RvY_08752"; transcript_id "RvY_08752.1"; gene_name "SRX1"; annotation "sulfiredoxin [EC:1.8.98.2]"; Pfam "[ParBc] ParB-like nuclease domain"; CDD "Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]"; EC "EC1.8.98.2"; KO "K12260"; similar_genes "SRXN1_MOUSE(e-value:1.9e-20;bit-score:97.0)"; Scaffold004 rebuild exon 1246998 1247059 . + . gene_id "RvY_08752"; transcript_id "RvY_08752.1"; Scaffold004 rebuild exon 1247375 1247537 . + . gene_id "RvY_08752"; transcript_id "RvY_08752.1"; Scaffold004 rebuild exon 1247616 1247739 . + . gene_id "RvY_08752"; transcript_id "RvY_08752.1"; Scaffold004 rebuild exon 1247836 1247957 . + . gene_id "RvY_08752"; transcript_id "RvY_08752.1"; Scaffold004 rebuild transcript 1248362 1250184 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1248362 1248648 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild exon 1248708 1249145 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild exon 1249209 1249346 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild exon 1249403 1249500 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild exon 1249571 1249741 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild exon 1249802 1249881 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild exon 1249978 1250184 . - . gene_id "RvY_08753"; transcript_id "RvY_08753.1"; Scaffold004 rebuild transcript 1250816 1253237 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; gene_name "K00816"; annotation "putative Kynurenine--oxoglutarate transaminase 3"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "hypothetical protein; Provisional"; EC "EC2.6.1.7"; KO "K00816"; similar_genes "KAT3_DANRE(e-value:1.2e-28;bit-score:124.0)"; Scaffold004 rebuild exon 1250816 1250831 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1250984 1251135 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1251220 1251314 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1251419 1251470 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1251574 1251672 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1251751 1251900 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1251968 1252060 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1252133 1252376 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1252472 1252764 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1252830 1253066 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild exon 1253175 1253237 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.1"; Scaffold004 rebuild transcript 1251308 1253237 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; gene_name "K00816"; annotation "putative Kynurenine--oxoglutarate transaminase 3"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "hypothetical protein; Provisional"; EC "EC2.6.1.7"; KO "K00816"; similar_genes "KAT3_DANRE(e-value:1.2e-28;bit-score:124.0)"; Scaffold004 rebuild exon 1251308 1251309 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1251419 1251470 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1251574 1251672 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1251751 1251900 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1251968 1252060 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1252133 1252376 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1252472 1252764 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1252830 1253066 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild exon 1253175 1253237 . + . gene_id "RvY_08754"; transcript_id "RvY_08754.2"; Scaffold004 rebuild transcript 1253616 1254832 . - . gene_id "RvY_08755"; transcript_id "RvY_08755.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1253616 1253966 . - . gene_id "RvY_08755"; transcript_id "RvY_08755.1"; Scaffold004 rebuild exon 1254029 1254590 . - . gene_id "RvY_08755"; transcript_id "RvY_08755.1"; Scaffold004 rebuild exon 1254660 1254832 . - . gene_id "RvY_08755"; transcript_id "RvY_08755.1"; Scaffold004 rebuild transcript 1255402 1256640 . + . gene_id "RvY_08756"; transcript_id "RvY_08756.1"; gene_name "H2A"; annotation "Histone H2A.Z"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "histone H2A; Provisional"; KO "K11251"; similar_genes "H2AZ_BOVIN(e-value:5.9e-60;bit-score:228.0)"; Scaffold004 rebuild exon 1255402 1255404 . + . gene_id "RvY_08756"; transcript_id "RvY_08756.1"; Scaffold004 rebuild exon 1255486 1255563 . + . gene_id "RvY_08756"; transcript_id "RvY_08756.1"; Scaffold004 rebuild exon 1256132 1256245 . + . gene_id "RvY_08756"; transcript_id "RvY_08756.1"; Scaffold004 rebuild exon 1256322 1256451 . + . gene_id "RvY_08756"; transcript_id "RvY_08756.1"; Scaffold004 rebuild exon 1256534 1256640 . + . gene_id "RvY_08756"; transcript_id "RvY_08756.1"; Scaffold004 rebuild transcript 1257598 1257801 . + . gene_id "RvY_08757"; transcript_id "RvY_08757.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold004 rebuild exon 1257598 1257801 . + . gene_id "RvY_08757"; transcript_id "RvY_08757.1"; Scaffold004 rebuild transcript 1258482 1263443 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; gene_name "OGDH"; annotation "2-oxoglutarate dehydrogenase, mitochondrial"; Pfam "[Transket_pyr] Transketolase, pyrimidine binding domain|[E1_dh] Dehydrogenase E1 component"; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; EC "EC1.2.4.2"; KO "K00164"; similar_genes "ODO1_CAEEL(e-value:1.0e-165;bit-score:580.0)"; Scaffold004 rebuild exon 1258482 1258664 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1258728 1258931 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1259018 1259117 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1259370 1259625 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1259734 1260128 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1260216 1260364 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1260462 1260794 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1261068 1261438 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1261696 1262002 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1262265 1262705 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1262861 1263027 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1263106 1263163 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild exon 1263339 1263443 . + . gene_id "RvY_08758"; transcript_id "RvY_08758.1"; Scaffold004 rebuild transcript 1264845 1265857 . + . gene_id "RvY_08759"; transcript_id "RvY_08759.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1264845 1264932 . + . gene_id "RvY_08759"; transcript_id "RvY_08759.1"; Scaffold004 rebuild exon 1265183 1265294 . + . gene_id "RvY_08759"; transcript_id "RvY_08759.1"; Scaffold004 rebuild exon 1265390 1265502 . + . gene_id "RvY_08759"; transcript_id "RvY_08759.1"; Scaffold004 rebuild exon 1265616 1265857 . + . gene_id "RvY_08759"; transcript_id "RvY_08759.1"; Scaffold004 rebuild transcript 1266328 1268466 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; gene_name "USP39"; annotation "U4/U6.U5 tri-snRNP-associated protein 2"; Pfam "[zf-UBP] Zn-finger in ubiquitin-hydrolases and other protein|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; KO "K12847"; similar_genes "SNUT2_MOUSE(e-value:5.2e-63;bit-score:238.0)"; Scaffold004 rebuild exon 1266328 1266384 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1266471 1266693 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1266766 1266827 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1266893 1267162 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1267236 1267378 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1267461 1267692 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1267768 1267920 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1268000 1268370 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild exon 1268433 1268466 . - . gene_id "RvY_08760"; transcript_id "RvY_08760.1"; Scaffold004 rebuild transcript 1269691 1270305 . + . gene_id "RvY_08761"; transcript_id "RvY_08761.1"; annotation "hypothetical protein."; Pfam "[Med11] Mediator complex protein"; Scaffold004 rebuild exon 1269691 1269775 . + . gene_id "RvY_08761"; transcript_id "RvY_08761.1"; Scaffold004 rebuild exon 1269883 1270023 . + . gene_id "RvY_08761"; transcript_id "RvY_08761.1"; Scaffold004 rebuild exon 1270100 1270305 . + . gene_id "RvY_08761"; transcript_id "RvY_08761.1"; Scaffold004 rebuild transcript 1270758 1273419 . - . gene_id "RvY_08762"; transcript_id "RvY_08762.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1270758 1270885 . - . gene_id "RvY_08762"; transcript_id "RvY_08762.1"; Scaffold004 rebuild exon 1270953 1271481 . - . gene_id "RvY_08762"; transcript_id "RvY_08762.1"; Scaffold004 rebuild exon 1271892 1272373 . - . gene_id "RvY_08762"; transcript_id "RvY_08762.1"; Scaffold004 rebuild exon 1272462 1272980 . - . gene_id "RvY_08762"; transcript_id "RvY_08762.1"; Scaffold004 rebuild exon 1273155 1273419 . - . gene_id "RvY_08762"; transcript_id "RvY_08762.1"; Scaffold004 rebuild transcript 1274171 1275868 . + . gene_id "RvY_08763"; transcript_id "RvY_08763.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1274171 1274675 . + . gene_id "RvY_08763"; transcript_id "RvY_08763.1"; Scaffold004 rebuild exon 1274901 1275119 . + . gene_id "RvY_08763"; transcript_id "RvY_08763.1"; Scaffold004 rebuild exon 1275318 1275413 . + . gene_id "RvY_08763"; transcript_id "RvY_08763.1"; Scaffold004 rebuild exon 1275690 1275868 . + . gene_id "RvY_08763"; transcript_id "RvY_08763.1"; Scaffold004 rebuild transcript 1276213 1276500 . - . gene_id "RvY_08764"; transcript_id "RvY_08764.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold004 rebuild exon 1276213 1276500 . - . gene_id "RvY_08764"; transcript_id "RvY_08764.1"; Scaffold004 rebuild transcript 1277570 1279896 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; gene_name "PPIL4"; annotation "Peptidyl-prolyl cis-trans isomerase-like 4"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis."; EC "EC5.2.1.8"; KO "K12735"; similar_genes "PPIL4_HUMAN(e-value:6.7e-78;bit-score:288.0)"; Scaffold004 rebuild exon 1277570 1277639 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1277699 1277831 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1277898 1278158 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1278251 1278347 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1278434 1278550 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1278634 1278758 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1278857 1278923 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1278999 1279110 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1279189 1279496 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild exon 1279570 1279896 . + . gene_id "RvY_08765"; transcript_id "RvY_08765.1"; Scaffold004 rebuild transcript 1279566 1280649 . - . gene_id "RvY_08766"; transcript_id "RvY_08766.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1279566 1279808 . - . gene_id "RvY_08766"; transcript_id "RvY_08766.1"; Scaffold004 rebuild exon 1280533 1280649 . - . gene_id "RvY_08766"; transcript_id "RvY_08766.1"; Scaffold004 rebuild transcript 1285090 1292151 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.1"; gene_name "SP8"; annotation "(1)putative Transcription factor Sp8(2,3)Transcription factor Sp8"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09198"; similar_genes "(1)SP8_MOUSE(e-value:1.2e-45;bit-score:181.0)(2,3)SP8_MOUSE(e-value:2.6e-60;bit-score:229.0)"; Scaffold004 rebuild exon 1285090 1285433 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.1"; Scaffold004 rebuild exon 1285493 1285534 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.1"; Scaffold004 rebuild exon 1285872 1287207 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.1"; Scaffold004 rebuild exon 1292122 1292151 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.1"; Scaffold004 rebuild transcript 1285090 1292151 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.2"; gene_name "SP8"; annotation "(1)putative Transcription factor Sp8(2,3)Transcription factor Sp8"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09198"; similar_genes "(1)SP8_MOUSE(e-value:1.2e-45;bit-score:181.0)(2,3)SP8_MOUSE(e-value:2.6e-60;bit-score:229.0)"; Scaffold004 rebuild exon 1285090 1285433 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.2"; Scaffold004 rebuild exon 1285872 1287207 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.2"; Scaffold004 rebuild exon 1292122 1292151 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.2"; Scaffold004 rebuild transcript 1285090 1293196 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.3"; gene_name "SP8"; annotation "(1)putative Transcription factor Sp8(2,3)Transcription factor Sp8"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09198"; similar_genes "(1)SP8_MOUSE(e-value:1.2e-45;bit-score:181.0)(2,3)SP8_MOUSE(e-value:2.6e-60;bit-score:229.0)"; Scaffold004 rebuild exon 1285090 1285433 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.3"; Scaffold004 rebuild exon 1285872 1287207 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.3"; Scaffold004 rebuild exon 1293191 1293196 . - . gene_id "RvY_08767"; transcript_id "RvY_08767.3"; Scaffold004 rebuild transcript 1295984 1296283 . + . gene_id "RvY_08768"; transcript_id "RvY_08768.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1295984 1296283 . + . gene_id "RvY_08768"; transcript_id "RvY_08768.1"; Scaffold004 rebuild transcript 1296397 1297134 . - . gene_id "RvY_08769"; transcript_id "RvY_08769.1"; gene_name "ARPC5"; annotation "actin related protein 2/3 complex, subunit 5"; Pfam "[P16-Arc] ARP2/3 complex 16 kDa subunit (p16-Arc)"; KO "K05754"; Scaffold004 rebuild exon 1296397 1296459 . - . gene_id "RvY_08769"; transcript_id "RvY_08769.1"; Scaffold004 rebuild exon 1296588 1296761 . - . gene_id "RvY_08769"; transcript_id "RvY_08769.1"; Scaffold004 rebuild exon 1296830 1296902 . - . gene_id "RvY_08769"; transcript_id "RvY_08769.1"; Scaffold004 rebuild exon 1296977 1297134 . - . gene_id "RvY_08769"; transcript_id "RvY_08769.1"; Scaffold004 rebuild transcript 1297800 1300915 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; gene_name "BRD4"; annotation "putative Bromodomain testis-specific protein"; Pfam "[Bromodomain]"; CDD "Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; KO "K11722"; similar_genes "BRDT_MACFA(e-value:4.2e-35;bit-score:146.0)"; Scaffold004 rebuild exon 1297800 1297970 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1298132 1298761 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1298820 1299261 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1299326 1299465 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1299526 1299750 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1299818 1300194 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1300275 1300469 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild exon 1300546 1300915 . + . gene_id "RvY_08770"; transcript_id "RvY_08770.1"; Scaffold004 rebuild transcript 1301431 1303315 . - . gene_id "RvY_08771"; transcript_id "RvY_08771.1"; gene_name "Smg4_UPF3"; annotation "hypothetical protein."; Pfam "[Smg4_UPF3] Smg-4/UPF3 family"; CDD "Smg-4/UPF3 family. This family contains proteins that are involved in nonsense mediated mRNA decay. A process that is triggered by premature stop codons in mRNA. The family includes Smg-4 and UPF3."; KO "K14328"; Scaffold004 rebuild exon 1301431 1302062 . - . gene_id "RvY_08771"; transcript_id "RvY_08771.1"; Scaffold004 rebuild exon 1302132 1302671 . - . gene_id "RvY_08771"; transcript_id "RvY_08771.1"; Scaffold004 rebuild exon 1302733 1302839 . - . gene_id "RvY_08771"; transcript_id "RvY_08771.1"; Scaffold004 rebuild exon 1302950 1303056 . - . gene_id "RvY_08771"; transcript_id "RvY_08771.1"; Scaffold004 rebuild exon 1303130 1303315 . - . gene_id "RvY_08771"; transcript_id "RvY_08771.1"; Scaffold004 rebuild transcript 1303811 1305884 . + . gene_id "RvY_08772"; transcript_id "RvY_08772.1"; gene_name "ANT"; annotation "ADP/ATP translocase 1"; Pfam "[Mito_carr] Mitochondrial carrier protein"; CDD "ADP/ATP transporter on adenylate translocase; Provisional"; KO "K05863"; similar_genes "ADT1_BOVIN(e-value:6.3e-138;bit-score:487.0)"; Scaffold004 rebuild exon 1303811 1303933 . + . gene_id "RvY_08772"; transcript_id "RvY_08772.1"; Scaffold004 rebuild exon 1304766 1305090 . + . gene_id "RvY_08772"; transcript_id "RvY_08772.1"; Scaffold004 rebuild exon 1305174 1305284 . + . gene_id "RvY_08772"; transcript_id "RvY_08772.1"; Scaffold004 rebuild exon 1305399 1305574 . + . gene_id "RvY_08772"; transcript_id "RvY_08772.1"; Scaffold004 rebuild exon 1305675 1305884 . + . gene_id "RvY_08772"; transcript_id "RvY_08772.1"; Scaffold004 rebuild transcript 1306991 1310861 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; gene_name "K08286"; annotation "protein-serine/threonine kinase [EC:2.7.11.-]"; Pfam "[DUF3635]"; CDD "Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]"; EC "EC2.7.11.-"; KO "K08286"; Scaffold004 rebuild exon 1306991 1307281 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild exon 1307422 1307767 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild exon 1308025 1308552 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild exon 1308821 1309343 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild exon 1309414 1309798 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild exon 1310033 1310356 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild exon 1310472 1310861 . + . gene_id "RvY_08773"; transcript_id "RvY_08773.1"; Scaffold004 rebuild transcript 1311471 1312069 . + . gene_id "RvY_08774"; transcript_id "RvY_08774.1"; annotation "hypothetical protein."; Pfam "[Prefoldin_2] Prefoldin subunit"; Scaffold004 rebuild exon 1311471 1311491 . + . gene_id "RvY_08774"; transcript_id "RvY_08774.1"; Scaffold004 rebuild exon 1311597 1311719 . + . gene_id "RvY_08774"; transcript_id "RvY_08774.1"; Scaffold004 rebuild exon 1311788 1312069 . + . gene_id "RvY_08774"; transcript_id "RvY_08774.1"; Scaffold004 rebuild transcript 1312131 1312565 . + . gene_id "RvY_08775"; transcript_id "RvY_08775.1"; annotation "hypothetical protein."; Pfam "[DUF3767]"; Scaffold004 rebuild exon 1312131 1312565 . + . gene_id "RvY_08775"; transcript_id "RvY_08775.1"; Scaffold004 rebuild transcript 1312823 1314031 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1)CCAPR_DROME(e-value:2.6e-09;bit-score:60.0)"; Scaffold004 rebuild exon 1312823 1313313 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.1"; Scaffold004 rebuild exon 1313377 1313496 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.1"; Scaffold004 rebuild exon 1313725 1314031 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.1"; Scaffold004 rebuild transcript 1312823 1313407 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; similar_genes "(1)CCAPR_DROME(e-value:2.6e-09;bit-score:60.0)"; Scaffold004 rebuild exon 1312823 1313313 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.2"; Scaffold004 rebuild exon 1313377 1313407 . - . gene_id "RvY_08776"; transcript_id "RvY_08776.2"; Scaffold004 rebuild transcript 1315373 1316598 . - . gene_id "RvY_08777"; transcript_id "RvY_08777.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1315373 1315624 . - . gene_id "RvY_08777"; transcript_id "RvY_08777.1"; Scaffold004 rebuild exon 1316509 1316598 . - . gene_id "RvY_08777"; transcript_id "RvY_08777.1"; Scaffold004 rebuild transcript 1318936 1319172 . + . gene_id "RvY_08778"; transcript_id "RvY_08778.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1318936 1319172 . + . gene_id "RvY_08778"; transcript_id "RvY_08778.1"; Scaffold004 rebuild transcript 1319587 1323015 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1319587 1319860 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild exon 1320063 1320809 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild exon 1321052 1321137 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild exon 1321329 1321364 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild exon 1321480 1321685 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild exon 1322348 1322719 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild exon 1322922 1323015 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.1"; Scaffold004 rebuild transcript 1319658 1323015 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1319658 1319860 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild exon 1320064 1320809 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild exon 1321052 1321137 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild exon 1321329 1321364 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild exon 1321480 1321685 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild exon 1322348 1322719 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild exon 1322922 1323015 . - . gene_id "RvY_08779"; transcript_id "RvY_08779.2"; Scaffold004 rebuild transcript 1323761 1324819 . - . gene_id "RvY_08780"; transcript_id "RvY_08780.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1323761 1323841 . - . gene_id "RvY_08780"; transcript_id "RvY_08780.1"; Scaffold004 rebuild exon 1324778 1324819 . - . gene_id "RvY_08780"; transcript_id "RvY_08780.1"; Scaffold004 rebuild transcript 1325327 1326695 . + . gene_id "RvY_08781"; transcript_id "RvY_08781.1"; gene_name "DnaJ_bact"; annotation "hypothetical protein."; Pfam "[TM2]|[DnaJ]"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; similar_genes "DJC22_RAT(e-value:6.6e-06;bit-score:49.0)"; Scaffold004 rebuild exon 1325327 1325711 . + . gene_id "RvY_08781"; transcript_id "RvY_08781.1"; Scaffold004 rebuild exon 1325919 1326388 . + . gene_id "RvY_08781"; transcript_id "RvY_08781.1"; Scaffold004 rebuild exon 1326462 1326695 . + . gene_id "RvY_08781"; transcript_id "RvY_08781.1"; Scaffold004 rebuild transcript 1325389 1325667 . - . gene_id "RvY_08782"; transcript_id "RvY_08782.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1325389 1325667 . - . gene_id "RvY_08782"; transcript_id "RvY_08782.1"; Scaffold004 rebuild transcript 1328077 1330539 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; gene_name "FBXL2"; annotation "F-box/LRR-repeat protein 20"; Pfam "[LRR_8] Leucine rich repeat|[F-box-like]|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[F-box]|[LRR_1] Leucine Rich Repeat"; KO "K10268"; similar_genes "FXL20_MOUSE(e-value:3.6e-51;bit-score:199.0)"; Scaffold004 rebuild exon 1328077 1328163 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; Scaffold004 rebuild exon 1328456 1328838 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; Scaffold004 rebuild exon 1328977 1329194 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; Scaffold004 rebuild exon 1329531 1329922 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; Scaffold004 rebuild exon 1330002 1330076 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; Scaffold004 rebuild exon 1330294 1330539 . - . gene_id "RvY_08783"; transcript_id "RvY_08783.1"; Scaffold004 rebuild transcript 1332954 1333426 . + . gene_id "RvY_08784"; transcript_id "RvY_08784.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1332954 1332956 . + . gene_id "RvY_08784"; transcript_id "RvY_08784.1"; Scaffold004 rebuild exon 1333019 1333426 . + . gene_id "RvY_08784"; transcript_id "RvY_08784.1"; Scaffold004 rebuild transcript 1334384 1337531 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; gene_name "DDC"; annotation "Histidine decarboxylase"; Pfam "[Pyridoxal_deC] Pyridoxal-dependent decarboxylase conserved domain"; CDD "Pyridoxal-dependent decarboxylase conserved domain."; EC "EC4.1.1.22|EC4.1.1.28"; KO "K01593"; similar_genes "DCHS_HUMAN(e-value:2.1e-68;bit-score:256.0)"; Scaffold004 rebuild exon 1334384 1334860 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1334923 1335024 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1335101 1335199 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1335268 1335358 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1335553 1335620 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1335682 1335843 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1335904 1336047 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1336229 1336363 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1336517 1336639 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1336711 1336824 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild exon 1337046 1337531 . - . gene_id "RvY_08785"; transcript_id "RvY_08785.1"; Scaffold004 rebuild transcript 1338018 1341119 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; gene_name "FARSB"; annotation "Probable phenylalanyl-tRNA synthetase beta chain"; Pfam "[B3_4] B3/4 domain|[B5] tRNA synthetase B5 domain"; CDD "phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes."; EC "EC6.1.1.20"; KO "K01890"; similar_genes "SYFB_DROME(e-value:5.1e-76;bit-score:282.0)"; Scaffold004 rebuild exon 1338018 1338169 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1338254 1338409 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1338527 1338737 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1338842 1338922 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1338984 1339194 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1339274 1339335 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1339440 1339491 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1339551 1339612 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1339687 1339757 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1339855 1339963 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1340034 1340300 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1340422 1340551 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1340662 1340777 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1340886 1340941 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild exon 1341062 1341119 . - . gene_id "RvY_08786"; transcript_id "RvY_08786.1"; Scaffold004 rebuild transcript 1342880 1346106 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[BTB] BTB/POZ domain|[Kelch_5] Kelch motif|[BACK] BTB And C-terminal Kelch|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; KO "K15046"; similar_genes "NS1BP_HUMAN(e-value:2.5e-20;bit-score:97.0)"; Scaffold004 rebuild exon 1342880 1342996 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1343151 1343344 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1343447 1343571 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1343673 1343797 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1343997 1344230 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1344293 1344491 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1344615 1344848 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1344971 1345115 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1345258 1345358 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1345418 1345543 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1345606 1345779 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild exon 1345850 1346106 . + . gene_id "RvY_08787"; transcript_id "RvY_08787.1"; Scaffold004 rebuild transcript 1346138 1346443 . - . gene_id "RvY_08788"; transcript_id "RvY_08788.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1346138 1346443 . - . gene_id "RvY_08788"; transcript_id "RvY_08788.1"; Scaffold004 rebuild transcript 1346482 1347757 . - . gene_id "RvY_08789"; transcript_id "RvY_08789.1"; gene_name "RRP4"; annotation "exosome complex component RRP4"; CDD "RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]"; KO "K03679"; Scaffold004 rebuild exon 1346482 1347219 . - . gene_id "RvY_08789"; transcript_id "RvY_08789.1"; Scaffold004 rebuild exon 1347401 1347757 . - . gene_id "RvY_08789"; transcript_id "RvY_08789.1"; Scaffold004 rebuild transcript 1348093 1349318 . + . gene_id "RvY_08790"; transcript_id "RvY_08790.1"; gene_name "PlsC"; annotation "hypothetical protein."; Pfam "[Acyltransferase]"; CDD "Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family."; KO "K13523"; Scaffold004 rebuild exon 1348093 1348473 . + . gene_id "RvY_08790"; transcript_id "RvY_08790.1"; Scaffold004 rebuild exon 1348533 1349318 . + . gene_id "RvY_08790"; transcript_id "RvY_08790.1"; Scaffold004 rebuild transcript 1350169 1351355 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; gene_name "YcaC_related"; annotation "hypothetical protein."; Pfam "[Isochorismatase] Isochorismatase family"; CDD "YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved Scaffold004 rebuild exon 1350169 1350364 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild exon 1350433 1350500 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild exon 1350587 1350634 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild exon 1350724 1350876 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild exon 1350952 1351038 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild exon 1351097 1351126 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild exon 1351206 1351355 . + . gene_id "RvY_08791"; transcript_id "RvY_08791.1"; Scaffold004 rebuild transcript 1351485 1352916 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; gene_name "DHRS7B"; annotation "putative Dehydrogenase/reductase SDR family member 7B"; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]|[NAD_binding_10] NADH(P)-binding"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.1.-.-"; KO "K11166"; similar_genes "DRS7B_XENLA(e-value:2.1e-47;bit-score:187.0)"; Scaffold004 rebuild exon 1351485 1351687 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; Scaffold004 rebuild exon 1351769 1351921 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; Scaffold004 rebuild exon 1352002 1352094 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; Scaffold004 rebuild exon 1352235 1352457 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; Scaffold004 rebuild exon 1352574 1352668 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; Scaffold004 rebuild exon 1352742 1352916 . - . gene_id "RvY_08792"; transcript_id "RvY_08792.1"; Scaffold004 rebuild transcript 1353673 1357112 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; gene_name "GYS"; annotation "Putative glycogen [starch] synthase"; Pfam "[Glyco_transf_5] Starch synthase catalytic domain|[Glycogen_syn] Glycogen synthase|[Glycos_transf_1] Glycosyl transferases group 1"; CDD "Glycogen synthase. This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P)."; EC "EC2.4.1.11"; KO "K00693"; similar_genes "GYS_DROME(e-value:9.7e-177;bit-score:616.0)"; Scaffold004 rebuild exon 1353673 1353844 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1353929 1354110 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1354169 1354360 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1354425 1354610 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1354692 1354836 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1355068 1355185 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1355295 1355415 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1355497 1355663 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1355742 1355820 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1355892 1356005 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1356132 1356216 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1356304 1356605 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1356682 1356747 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1356818 1356876 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild exon 1356941 1357112 . + . gene_id "RvY_08793"; transcript_id "RvY_08793.1"; Scaffold004 rebuild transcript 1357426 1358745 . - . gene_id "RvY_08794"; transcript_id "RvY_08794.1"; gene_name "COG1565"; annotation "putative Protein midA homolog, mitochondrial"; Pfam "[Methyltransf_28] Putative S-adenosyl-L-methionine-dependent methyltransferase"; CDD "Uncharacterized conserved protein [Function unknown]"; similar_genes "MIDA_DROME(e-value:2.3e-29;bit-score:127.0)"; Scaffold004 rebuild exon 1357426 1358745 . - . gene_id "RvY_08794"; transcript_id "RvY_08794.1"; Scaffold004 rebuild transcript 1359486 1361495 . + . gene_id "RvY_08795"; transcript_id "RvY_08795.1"; annotation "hypothetical protein."; Pfam "[Atg14] UV radiation resistance protein and autophagy-related subunit 14"; Scaffold004 rebuild exon 1359486 1359548 . + . gene_id "RvY_08795"; transcript_id "RvY_08795.1"; Scaffold004 rebuild exon 1359660 1359821 . + . gene_id "RvY_08795"; transcript_id "RvY_08795.1"; Scaffold004 rebuild exon 1359888 1360286 . + . gene_id "RvY_08795"; transcript_id "RvY_08795.1"; Scaffold004 rebuild exon 1360347 1360906 . + . gene_id "RvY_08795"; transcript_id "RvY_08795.1"; Scaffold004 rebuild exon 1361102 1361495 . + . gene_id "RvY_08795"; transcript_id "RvY_08795.1"; Scaffold004 rebuild transcript 1361650 1362809 . - . gene_id "RvY_08796"; transcript_id "RvY_08796.1"; gene_name "GFI1"; annotation "putative Zinc finger protein Gfi-1b"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-BED] BED zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09223"; similar_genes "GFI1B_XENLA(e-value:5.4e-50;bit-score:195.0)"; Scaffold004 rebuild exon 1361650 1361852 . - . gene_id "RvY_08796"; transcript_id "RvY_08796.1"; Scaffold004 rebuild exon 1361919 1362040 . - . gene_id "RvY_08796"; transcript_id "RvY_08796.1"; Scaffold004 rebuild exon 1362219 1362504 . - . gene_id "RvY_08796"; transcript_id "RvY_08796.1"; Scaffold004 rebuild exon 1362561 1362632 . - . gene_id "RvY_08796"; transcript_id "RvY_08796.1"; Scaffold004 rebuild exon 1362704 1362809 . - . gene_id "RvY_08796"; transcript_id "RvY_08796.1"; Scaffold004 rebuild transcript 1364154 1368987 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; annotation "hypothetical protein."; Pfam "[MAM]|[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A|[Trypsin]"; Scaffold004 rebuild exon 1364154 1364342 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1364433 1364566 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1364767 1365110 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1365218 1365398 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1365480 1365644 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1365721 1366078 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1366147 1366274 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1366382 1366453 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1366524 1366596 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1366670 1366800 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1366884 1367019 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1367100 1367229 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1367301 1367451 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1367532 1367681 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1367792 1367942 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1368046 1368199 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1368291 1368312 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1368409 1368507 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1368585 1368617 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1368718 1368831 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild exon 1368921 1368987 . - . gene_id "RvY_08797"; transcript_id "RvY_08797.1"; Scaffold004 rebuild transcript 1369426 1370834 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; gene_name "FAM125"; annotation "ESCRT-I complex subunit MVB12"; Pfam "[DUF2464]"; KO "K12186"; Scaffold004 rebuild exon 1369426 1369473 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1369547 1369677 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1369734 1369969 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1370048 1370128 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1370199 1370328 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1370395 1370491 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1370576 1370686 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild exon 1370751 1370834 . - . gene_id "RvY_08798"; transcript_id "RvY_08798.1"; Scaffold004 rebuild transcript 1372056 1382723 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1372056 1372576 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; Scaffold004 rebuild exon 1372973 1373477 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; Scaffold004 rebuild exon 1373904 1374335 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; Scaffold004 rebuild exon 1374596 1375239 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; Scaffold004 rebuild exon 1375618 1376006 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; Scaffold004 rebuild exon 1382686 1382723 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.1"; Scaffold004 rebuild transcript 1372056 1380721 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1372056 1372576 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; Scaffold004 rebuild exon 1372973 1373405 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; Scaffold004 rebuild exon 1373904 1374335 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; Scaffold004 rebuild exon 1374596 1375239 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; Scaffold004 rebuild exon 1375618 1376006 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; Scaffold004 rebuild exon 1380624 1380721 . - . gene_id "RvY_08799"; transcript_id "RvY_08799.2"; Scaffold004 rebuild transcript 1383381 1383605 . + . gene_id "RvY_08800"; transcript_id "RvY_08800.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1383381 1383605 . + . gene_id "RvY_08800"; transcript_id "RvY_08800.1"; Scaffold004 rebuild transcript 1383871 1385492 . + . gene_id "RvY_08801"; transcript_id "RvY_08801.1"; gene_name "K07252"; annotation "dolichyldiphosphatase [EC:3.6.1.43]"; Pfam "[PAP2] PAP2 superfamily"; CDD "PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions."; EC "EC3.6.1.43"; KO "K07252"; Scaffold004 rebuild exon 1383871 1384016 . + . gene_id "RvY_08801"; transcript_id "RvY_08801.1"; Scaffold004 rebuild exon 1384114 1384230 . + . gene_id "RvY_08801"; transcript_id "RvY_08801.1"; Scaffold004 rebuild exon 1384306 1384434 . + . gene_id "RvY_08801"; transcript_id "RvY_08801.1"; Scaffold004 rebuild exon 1385271 1385360 . + . gene_id "RvY_08801"; transcript_id "RvY_08801.1"; Scaffold004 rebuild exon 1385450 1385492 . + . gene_id "RvY_08801"; transcript_id "RvY_08801.1"; Scaffold004 rebuild transcript 1387182 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; annotation "GTPase-activating Rap/Ran-GAP domain-like protein 3"; Pfam "[Rap_GAP] Rap/ran-GAP|[CNH]"; similar_genes "GARL3_CHICK(e-value:3.7e-53;bit-score:206.0)"; Scaffold004 rebuild exon 1387182 1387537 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1397089 1397158 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1398263 1398425 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1398496 1398614 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1398750 1398881 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1398949 1399051 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1399329 1399391 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1399462 1399497 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1399580 1399683 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1399746 1399773 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1399844 1399927 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1399994 1400146 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1400222 1400523 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1400593 1400713 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1400780 1401072 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1401150 1401447 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1401514 1401600 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1401680 1401928 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild exon 1401997 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.1"; Scaffold004 rebuild transcript 1393906 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; annotation "GTPase-activating Rap/Ran-GAP domain-like protein 3"; Pfam "[Rap_GAP] Rap/ran-GAP|[CNH]"; similar_genes "GARL3_CHICK(e-value:3.7e-53;bit-score:206.0)"; Scaffold004 rebuild exon 1393906 1394075 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1397089 1397158 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1398263 1398425 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1398496 1398614 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1398750 1398881 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1398949 1399051 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1399329 1399391 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1399462 1399497 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1399580 1399683 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1399746 1399773 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1399844 1399927 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1399994 1400146 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1400222 1400523 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1400593 1400713 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1400780 1401072 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1401150 1401447 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1401514 1401600 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1401680 1401928 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild exon 1401997 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.2"; Scaffold004 rebuild transcript 1396741 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; annotation "GTPase-activating Rap/Ran-GAP domain-like protein 3"; Pfam "[Rap_GAP] Rap/ran-GAP|[CNH]"; similar_genes "GARL3_CHICK(e-value:3.7e-53;bit-score:206.0)"; Scaffold004 rebuild exon 1396741 1396880 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1397089 1397158 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1398263 1398425 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1398496 1398614 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1398750 1398881 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1398949 1399051 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1399329 1399391 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1399462 1399497 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1399580 1399683 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1399746 1399773 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1399844 1399927 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1399994 1400146 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1400222 1400523 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1400593 1400713 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1400780 1401072 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1401150 1401447 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1401514 1401600 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1401680 1401928 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild exon 1401997 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.3"; Scaffold004 rebuild transcript 1390607 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; annotation "GTPase-activating Rap/Ran-GAP domain-like protein 3"; Pfam "[Rap_GAP] Rap/ran-GAP|[CNH]"; similar_genes "GARL3_CHICK(e-value:3.7e-53;bit-score:206.0)"; Scaffold004 rebuild exon 1390607 1390701 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1397089 1397158 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1398263 1398425 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1398496 1398614 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1398750 1398881 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1398949 1399051 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1399329 1399391 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1399462 1399497 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1399580 1399683 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1399746 1399773 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1399844 1399927 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1399994 1400146 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1400222 1400523 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1400593 1400713 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1400780 1401072 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1401150 1401447 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1401514 1401600 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1401680 1401928 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild exon 1401997 1402322 . + . gene_id "RvY_08802"; transcript_id "RvY_08802.4"; Scaffold004 rebuild transcript 1390647 1391144 . - . gene_id "RvY_08803"; transcript_id "RvY_08803.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1390647 1391144 . - . gene_id "RvY_08803"; transcript_id "RvY_08803.1"; Scaffold004 rebuild transcript 1402658 1416444 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; gene_name "TSPN"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain|[cEGF] Complement Clr-like EGF-like|[VWC] von Willebrand factor type C domain|[EGF] EGF-like domain|[EGF_CA] Calcium-binding EGF domain"; CDD "Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin"; Scaffold004 rebuild exon 1402658 1402762 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1402839 1403111 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1403176 1403370 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1403436 1403509 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1403599 1403709 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1403808 1403945 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1404234 1404329 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1404421 1404543 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1404628 1404762 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1404994 1405335 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1405398 1405706 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1405797 1405905 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1409519 1409840 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1409965 1410118 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1410274 1410432 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild exon 1416414 1416444 . - . gene_id "RvY_08804"; transcript_id "RvY_08804.1"; Scaffold004 rebuild transcript 1411365 1411556 . + . gene_id "RvY_08805"; transcript_id "RvY_08805.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1411365 1411556 . + . gene_id "RvY_08805"; transcript_id "RvY_08805.1"; Scaffold004 rebuild transcript 1418120 1420633 . + . gene_id "RvY_08806"; transcript_id "RvY_08806.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold004 rebuild exon 1418120 1420633 . + . gene_id "RvY_08806"; transcript_id "RvY_08806.1"; Scaffold004 rebuild transcript 1422363 1427017 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; gene_name "CSE1"; annotation "hypothetical protein."; Pfam "[IBN_N] Importin-beta N-terminal domain"; CDD "CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 1422363 1422722 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1422792 1422995 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1423053 1423391 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1423459 1423642 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1423758 1423910 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1424011 1424116 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1424216 1424386 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1424460 1424781 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1424885 1425335 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1425621 1425972 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild exon 1426648 1427017 . + . gene_id "RvY_08807"; transcript_id "RvY_08807.1"; Scaffold004 rebuild transcript 1428194 1429331 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1428194 1428391 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.1"; Scaffold004 rebuild exon 1428488 1428619 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.1"; Scaffold004 rebuild exon 1428697 1428854 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.1"; Scaffold004 rebuild exon 1428931 1429021 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.1"; Scaffold004 rebuild exon 1429110 1429331 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.1"; Scaffold004 rebuild transcript 1427396 1428185 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1427396 1427718 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.2"; Scaffold004 rebuild exon 1427779 1427989 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.2"; Scaffold004 rebuild exon 1428096 1428185 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.2"; Scaffold004 rebuild transcript 1427925 1428736 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1427925 1427989 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.3"; Scaffold004 rebuild exon 1428274 1428391 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.3"; Scaffold004 rebuild exon 1428488 1428736 . + . gene_id "RvY_08808"; transcript_id "RvY_08808.3"; Scaffold004 rebuild transcript 1430176 1431671 . + . gene_id "RvY_08809"; transcript_id "RvY_08809.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "HM19_CAEEL(e-value:1.4e-12;bit-score:71.0)"; Scaffold004 rebuild exon 1430176 1430401 . + . gene_id "RvY_08809"; transcript_id "RvY_08809.1"; Scaffold004 rebuild exon 1430677 1430902 . + . gene_id "RvY_08809"; transcript_id "RvY_08809.1"; Scaffold004 rebuild exon 1431305 1431671 . + . gene_id "RvY_08809"; transcript_id "RvY_08809.1"; Scaffold004 rebuild transcript 1434973 1437076 . + . gene_id "RvY_08810"; transcript_id "RvY_08810.1"; gene_name "(1)EN"; annotation "(1)putative Homeobox protein engrailed-2-B(2)hypothetical protein."; Pfam "[Homeobox]"; KO "(1)K09319"; similar_genes "(1)HME2B_XENLA(e-value:4.0e-27;bit-score:119.0)"; Scaffold004 rebuild exon 1434973 1435267 . + . gene_id "RvY_08810"; transcript_id "RvY_08810.1"; Scaffold004 rebuild exon 1436642 1436832 . + . gene_id "RvY_08810"; transcript_id "RvY_08810.1"; Scaffold004 rebuild exon 1436939 1437076 . + . gene_id "RvY_08810"; transcript_id "RvY_08810.1"; Scaffold004 rebuild transcript 1434973 1435308 . + . gene_id "RvY_08810"; transcript_id "RvY_08810.2"; gene_name "(1)EN"; annotation "(1)putative Homeobox protein engrailed-2-B(2)hypothetical protein."; Pfam "[Homeobox]"; KO "(1)K09319"; similar_genes "(1)HME2B_XENLA(e-value:4.0e-27;bit-score:119.0)"; Scaffold004 rebuild exon 1434973 1435308 . + . gene_id "RvY_08810"; transcript_id "RvY_08810.2"; Scaffold004 rebuild transcript 1438086 1438460 . + . gene_id "RvY_08811"; transcript_id "RvY_08811.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1438086 1438460 . + . gene_id "RvY_08811"; transcript_id "RvY_08811.1"; Scaffold004 rebuild transcript 1439460 1441389 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; gene_name "K01081"; annotation "5'-nucleotidase [EC:3.1.3.5]"; Pfam "[UMPH-1] Pyrimidine 5'-nucleotidase (UMPH-1)"; CDD "haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB."; EC "EC3.1.3.5"; KO "K01081"; similar_genes "5NT3L_CHICK(e-value:2.9e-06;bit-score:50.0)"; Scaffold004 rebuild exon 1439460 1439671 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1439741 1439807 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1439918 1440051 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1440121 1440158 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1440233 1440279 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1440360 1440435 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1440523 1440622 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1440691 1440779 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1440843 1440925 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1441000 1441275 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild exon 1441345 1441389 . + . gene_id "RvY_08812"; transcript_id "RvY_08812.1"; Scaffold004 rebuild transcript 1441677 1446197 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; gene_name "VWD"; annotation "hypothetical protein."; Pfam "[VWD] von Willebrand factor type D domain|[VWC] von Willebrand factor type C domain"; CDD "von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation."; Scaffold004 rebuild exon 1441677 1442104 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1442183 1442206 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1442270 1442354 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1442488 1442735 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1442795 1443026 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1443155 1443261 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1443339 1443375 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1443488 1443583 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1443661 1443749 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1443835 1443862 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1443939 1444021 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1444107 1444395 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1445764 1445846 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild exon 1446083 1446197 . - . gene_id "RvY_08813"; transcript_id "RvY_08813.1"; Scaffold004 rebuild transcript 1447571 1448368 . - . gene_id "RvY_08814"; transcript_id "RvY_08814.1"; annotation "hypothetical protein."; Pfam "[DUF2638]"; Scaffold004 rebuild exon 1447571 1447758 . - . gene_id "RvY_08814"; transcript_id "RvY_08814.1"; Scaffold004 rebuild exon 1447830 1447902 . - . gene_id "RvY_08814"; transcript_id "RvY_08814.1"; Scaffold004 rebuild exon 1448027 1448131 . - . gene_id "RvY_08814"; transcript_id "RvY_08814.1"; Scaffold004 rebuild exon 1448309 1448368 . - . gene_id "RvY_08814"; transcript_id "RvY_08814.1"; Scaffold004 rebuild transcript 1448874 1451889 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold004 rebuild exon 1448874 1449002 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1449160 1449248 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1449314 1449495 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1449570 1449615 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1449677 1449774 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1449859 1449949 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1450021 1450639 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1450742 1450907 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1451028 1451168 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1451247 1451359 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1451440 1451598 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild exon 1451737 1451889 . + . gene_id "RvY_08815"; transcript_id "RvY_08815.1"; Scaffold004 rebuild transcript 1452120 1452332 . - . gene_id "RvY_08816"; transcript_id "RvY_08816.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1452120 1452332 . - . gene_id "RvY_08816"; transcript_id "RvY_08816.1"; Scaffold004 rebuild transcript 1453633 1453869 . - . gene_id "RvY_08817"; transcript_id "RvY_08817.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1453633 1453869 . - . gene_id "RvY_08817"; transcript_id "RvY_08817.1"; Scaffold004 rebuild transcript 1457188 1457421 . - . gene_id "RvY_08818"; transcript_id "RvY_08818.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1457188 1457421 . - . gene_id "RvY_08818"; transcript_id "RvY_08818.1"; Scaffold004 rebuild transcript 1465067 1470102 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; annotation "hypothetical protein."; similar_genes "ZN608_MOUSE(e-value:4.2e-16;bit-score:83.0)"; Scaffold004 rebuild exon 1465067 1465864 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1466275 1466392 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1466487 1466607 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1467313 1467613 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1467816 1468419 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1468497 1468967 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1469034 1469656 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1469722 1469968 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild exon 1470053 1470102 . + . gene_id "RvY_08819"; transcript_id "RvY_08819.1"; Scaffold004 rebuild transcript 1470719 1471761 . - . gene_id "RvY_08820"; transcript_id "RvY_08820.1"; gene_name "SAR1A"; annotation "GTP-binding protein SAR1b"; Pfam "[SRPRB] Signal recognition particle receptor beta subunit|[G-alpha] G-protein alpha subunit|[Ras] Ras family|[Miro] Miro-like protein|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family"; CDD "Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation."; KO "K07953"; similar_genes "SAR1B_BOVIN(e-value:6.6e-76;bit-score:281.0)"; Scaffold004 rebuild exon 1470719 1470835 . - . gene_id "RvY_08820"; transcript_id "RvY_08820.1"; Scaffold004 rebuild exon 1470945 1471076 . - . gene_id "RvY_08820"; transcript_id "RvY_08820.1"; Scaffold004 rebuild exon 1471161 1471330 . - . gene_id "RvY_08820"; transcript_id "RvY_08820.1"; Scaffold004 rebuild exon 1471485 1471604 . - . gene_id "RvY_08820"; transcript_id "RvY_08820.1"; Scaffold004 rebuild exon 1471719 1471761 . - . gene_id "RvY_08820"; transcript_id "RvY_08820.1"; Scaffold004 rebuild transcript 1473054 1476612 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; annotation "hypothetical protein."; Pfam "[Uso1_p115_C] Uso1 / p115 like vesicle tethering protein, C terminal region|[Uso1_p115_head] Uso1 / p115 like vesicle tethering protein, head region"; Scaffold004 rebuild exon 1473054 1473074 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1473146 1473307 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1473379 1474210 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1474319 1474431 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1474520 1474630 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1474694 1475112 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1475187 1475661 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1475730 1475888 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1475962 1476071 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1476151 1476295 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1476382 1476468 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild exon 1476541 1476612 . - . gene_id "RvY_08821"; transcript_id "RvY_08821.1"; Scaffold004 rebuild transcript 1477169 1478034 . + . gene_id "RvY_08822"; transcript_id "RvY_08822.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1477169 1477479 . + . gene_id "RvY_08822"; transcript_id "RvY_08822.1"; Scaffold004 rebuild exon 1477773 1478034 . + . gene_id "RvY_08822"; transcript_id "RvY_08822.1"; Scaffold004 rebuild transcript 1478258 1478837 . - . gene_id "RvY_08823"; transcript_id "RvY_08823.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1478258 1478302 . - . gene_id "RvY_08823"; transcript_id "RvY_08823.1"; Scaffold004 rebuild exon 1478371 1478729 . - . gene_id "RvY_08823"; transcript_id "RvY_08823.1"; Scaffold004 rebuild exon 1478810 1478837 . - . gene_id "RvY_08823"; transcript_id "RvY_08823.1"; Scaffold004 rebuild transcript 1478870 1479310 . - . gene_id "RvY_08824"; transcript_id "RvY_08824.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1478870 1479310 . - . gene_id "RvY_08824"; transcript_id "RvY_08824.1"; Scaffold004 rebuild transcript 1479899 1481274 . + . gene_id "RvY_08825"; transcript_id "RvY_08825.1"; gene_name "SRP14"; annotation "signal recognition particle subunit SRP14"; Pfam "[SRP14] Signal recognition particle 14kD protein"; KO "K03104"; Scaffold004 rebuild exon 1479899 1479942 . + . gene_id "RvY_08825"; transcript_id "RvY_08825.1"; Scaffold004 rebuild exon 1480863 1481274 . + . gene_id "RvY_08825"; transcript_id "RvY_08825.1"; Scaffold004 rebuild transcript 1481982 1483560 . - . gene_id "RvY_08826"; transcript_id "RvY_08826.1"; gene_name "EIF4EBP1"; annotation "eukaryotic translation initiation factor 4E binding protein 1"; Pfam "[eIF_4EBP] Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)"; KO "K07205"; similar_genes "4EBP2_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold004 rebuild exon 1481982 1482016 . - . gene_id "RvY_08826"; transcript_id "RvY_08826.1"; Scaffold004 rebuild exon 1482090 1482260 . - . gene_id "RvY_08826"; transcript_id "RvY_08826.1"; Scaffold004 rebuild exon 1483419 1483560 . - . gene_id "RvY_08826"; transcript_id "RvY_08826.1"; Scaffold004 rebuild transcript 1484124 1485641 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; annotation "hypothetical protein."; Pfam "[Alpha-2-MRAP_N] Alpha-2-macroglobulin RAP, N-terminal domain|[Alpha-2-MRAP_C] Alpha-2-macroglobulin RAP, C-terminal domain"; Scaffold004 rebuild exon 1484124 1484333 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; Scaffold004 rebuild exon 1484438 1484539 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; Scaffold004 rebuild exon 1484606 1484813 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; Scaffold004 rebuild exon 1484881 1484982 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; Scaffold004 rebuild exon 1485072 1485349 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; Scaffold004 rebuild exon 1485414 1485641 . + . gene_id "RvY_08827"; transcript_id "RvY_08827.1"; Scaffold004 rebuild transcript 1485832 1486860 . - . gene_id "RvY_08828"; transcript_id "RvY_08828.1"; annotation "putative NFU1 iron-sulfur cluster scaffold homolog, mitochondrial"; Pfam "[Nfu_N] Scaffold protein Nfu/NifU N terminal|[NifU] NifU-like domain"; similar_genes "NFU1_MOUSE(e-value:4.8e-34;bit-score:142.0)"; Scaffold004 rebuild exon 1485832 1486053 . - . gene_id "RvY_08828"; transcript_id "RvY_08828.1"; Scaffold004 rebuild exon 1486113 1486398 . - . gene_id "RvY_08828"; transcript_id "RvY_08828.1"; Scaffold004 rebuild exon 1486474 1486615 . - . gene_id "RvY_08828"; transcript_id "RvY_08828.1"; Scaffold004 rebuild exon 1486689 1486860 . - . gene_id "RvY_08828"; transcript_id "RvY_08828.1"; Scaffold004 rebuild transcript 1487350 1490661 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; gene_name "CNOT2"; annotation "CCR4-NOT transcription complex subunit 2"; Pfam "[NOT2_3_5] NOT2 / NOT3 / NOT5 family"; KO "K12605"; similar_genes "CNOT2_MOUSE(e-value:5.2e-10;bit-score:62.0)"; Scaffold004 rebuild exon 1487350 1487593 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1487681 1487781 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1487852 1487904 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1487968 1488050 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1488114 1488276 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1488356 1488623 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1488734 1488924 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1488986 1489099 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1489175 1489215 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1489279 1489404 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1489489 1489729 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1489848 1489902 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1489970 1490077 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1490150 1490228 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1490376 1490423 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild exon 1490597 1490661 . - . gene_id "RvY_08829"; transcript_id "RvY_08829.1"; Scaffold004 rebuild transcript 1490882 1491106 . + . gene_id "RvY_08830"; transcript_id "RvY_08830.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1490882 1491106 . + . gene_id "RvY_08830"; transcript_id "RvY_08830.1"; Scaffold004 rebuild transcript 1491431 1495061 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; gene_name "COG1204"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[Sec63] Sec63 Brl domain|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II helicase [General function prediction only]"; EC "EC3.6.1.-"; KO "K15271"; similar_genes "HFM1_XENTR(e-value:3.8e-23;bit-score:106.0)"; Scaffold004 rebuild exon 1491431 1491504 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild exon 1491571 1492332 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild exon 1492542 1493081 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild exon 1493239 1493488 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild exon 1493554 1493799 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild exon 1493896 1494517 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild exon 1494577 1495061 . - . gene_id "RvY_08831"; transcript_id "RvY_08831.1"; Scaffold004 rebuild transcript 1496009 1498517 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; gene_name "FAH"; annotation "Fumarylacetoacetase"; Pfam "[FAA_hydrolase] Fumarylacetoacetate (FAA) hydrolase family|[DUF1969]"; CDD "fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate."; EC "EC3.7.1.2"; KO "K01555"; similar_genes "FAAA_HUMAN(e-value:6.5e-91;bit-score:331.0)"; Scaffold004 rebuild exon 1496009 1496101 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1496179 1496301 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1496379 1496500 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1497041 1497138 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1497230 1497272 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1497389 1497486 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1497573 1497725 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1497798 1498051 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1498113 1498214 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild exon 1498302 1498517 . + . gene_id "RvY_08832"; transcript_id "RvY_08832.1"; Scaffold004 rebuild transcript 1498826 1499655 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; EC "(2)EC6.3.2.-"; similar_genes "(2)RING1_DROME(e-value:6.9e-12;bit-score:69.0)"; Scaffold004 rebuild exon 1498826 1499061 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.1"; Scaffold004 rebuild exon 1499125 1499474 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.1"; Scaffold004 rebuild exon 1499645 1499655 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.1"; Scaffold004 rebuild transcript 1499349 1499875 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.2"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; EC "(2)EC6.3.2.-"; similar_genes "(2)RING1_DROME(e-value:6.9e-12;bit-score:69.0)"; Scaffold004 rebuild exon 1499349 1499474 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.2"; Scaffold004 rebuild exon 1499645 1499875 . - . gene_id "RvY_08833"; transcript_id "RvY_08833.2"; Scaffold004 rebuild transcript 1499877 1500435 . + . gene_id "RvY_08834"; transcript_id "RvY_08834.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1499877 1499903 . + . gene_id "RvY_08834"; transcript_id "RvY_08834.1"; Scaffold004 rebuild exon 1499972 1500046 . + . gene_id "RvY_08834"; transcript_id "RvY_08834.1"; Scaffold004 rebuild exon 1500259 1500435 . + . gene_id "RvY_08834"; transcript_id "RvY_08834.1"; Scaffold004 rebuild transcript 1500589 1501346 . + . gene_id "RvY_08835"; transcript_id "RvY_08835.1"; annotation "putative ORM1-like protein 2"; Pfam "[ORMDL] ORMDL family"; similar_genes "ORML2_MOUSE(e-value:9.5e-35;bit-score:145.0)"; Scaffold004 rebuild exon 1500589 1500646 . + . gene_id "RvY_08835"; transcript_id "RvY_08835.1"; Scaffold004 rebuild exon 1500759 1500877 . + . gene_id "RvY_08835"; transcript_id "RvY_08835.1"; Scaffold004 rebuild exon 1500948 1501099 . + . gene_id "RvY_08835"; transcript_id "RvY_08835.1"; Scaffold004 rebuild exon 1501211 1501346 . + . gene_id "RvY_08835"; transcript_id "RvY_08835.1"; Scaffold004 rebuild transcript 1501959 1503581 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; gene_name "EFh"; annotation "EF-hand domain-containing protein D2"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 Scaffold004 rebuild exon 1501959 1502102 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; Scaffold004 rebuild exon 1502195 1502223 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; Scaffold004 rebuild exon 1502311 1502416 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; Scaffold004 rebuild exon 1502877 1502919 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; Scaffold004 rebuild exon 1503002 1503106 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; Scaffold004 rebuild exon 1503235 1503581 . - . gene_id "RvY_08836"; transcript_id "RvY_08836.1"; Scaffold004 rebuild transcript 1504891 1505425 . + . gene_id "RvY_08837"; transcript_id "RvY_08837.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1504891 1505003 . + . gene_id "RvY_08837"; transcript_id "RvY_08837.1"; Scaffold004 rebuild exon 1505170 1505425 . + . gene_id "RvY_08837"; transcript_id "RvY_08837.1"; Scaffold004 rebuild transcript 1505752 1513448 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[BiPBP_C] Penicillin-Binding Protein C-terminus Family|[DUF1136] Repeat of unknown function (DUF1136)|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain|[Receptor_2B4] Natural killer cell receptor 2B4"; similar_genes "TITIN_DROME(e-value:9.5e-18;bit-score:88.0)"; Scaffold004 rebuild exon 1505752 1505831 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1505903 1505953 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1506023 1506129 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1506204 1506450 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1506514 1506564 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1506691 1506820 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1506883 1507511 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1507604 1507724 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1507811 1508001 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1508077 1508220 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1508297 1508539 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1508630 1508773 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1508856 1509805 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1511158 1511224 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild exon 1513421 1513448 . - . gene_id "RvY_08838"; transcript_id "RvY_08838.1"; Scaffold004 rebuild transcript 1514306 1514503 . + . gene_id "RvY_08840"; transcript_id "RvY_08840.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1514306 1514503 . + . gene_id "RvY_08840"; transcript_id "RvY_08840.1"; Scaffold004 rebuild transcript 1514585 1516322 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; gene_name "GNB5"; annotation "Guanine nucleotide-binding protein subunit beta-5"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K04539"; similar_genes "GBB5_MOUSE(e-value:3.3e-56;bit-score:216.0)"; Scaffold004 rebuild exon 1514585 1514596 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1514675 1514841 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1514918 1515014 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1515101 1515241 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1515306 1515446 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1515521 1515647 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1515749 1515926 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1516022 1516099 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild exon 1516172 1516322 . - . gene_id "RvY_08841"; transcript_id "RvY_08841.1"; Scaffold004 rebuild transcript 1518100 1518813 . + . gene_id "RvY_08842"; transcript_id "RvY_08842.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1518100 1518217 . + . gene_id "RvY_08842"; transcript_id "RvY_08842.1"; Scaffold004 rebuild exon 1518284 1518813 . + . gene_id "RvY_08842"; transcript_id "RvY_08842.1"; Scaffold004 rebuild transcript 1519312 1519632 . + . gene_id "RvY_08843"; transcript_id "RvY_08843.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 1519312 1519632 . + . gene_id "RvY_08843"; transcript_id "RvY_08843.1"; Scaffold004 rebuild transcript 1522252 1524562 . + . gene_id "RvY_08844"; transcript_id "RvY_08844.1"; gene_name "BSG"; annotation "basigin"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain"; KO "K06535"; similar_genes "NPTN_HUMAN(e-value:1.5e-09;bit-score:61.0)"; Scaffold004 rebuild exon 1522252 1522321 . + . gene_id "RvY_08844"; transcript_id "RvY_08844.1"; Scaffold004 rebuild exon 1522426 1522728 . + . gene_id "RvY_08844"; transcript_id "RvY_08844.1"; Scaffold004 rebuild exon 1522975 1523295 . + . gene_id "RvY_08844"; transcript_id "RvY_08844.1"; Scaffold004 rebuild exon 1523947 1524303 . + . gene_id "RvY_08844"; transcript_id "RvY_08844.1"; Scaffold004 rebuild exon 1524375 1524562 . + . gene_id "RvY_08844"; transcript_id "RvY_08844.1"; Scaffold004 rebuild transcript 1524895 1526804 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; gene_name "SrmB"; annotation "putative DEAD-box ATP-dependent RNA helicase 36"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K14778"; similar_genes "RH36_ORYSJ(e-value:1.3e-40;bit-score:164.0)"; Scaffold004 rebuild exon 1524895 1524993 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild exon 1525083 1525590 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild exon 1525661 1525801 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild exon 1525861 1526039 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild exon 1526100 1526224 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild exon 1526298 1526507 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild exon 1526675 1526804 . - . gene_id "RvY_08845"; transcript_id "RvY_08845.1"; Scaffold004 rebuild transcript 1527615 1530420 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; gene_name "UBLE1B"; annotation "SUMO-activating enzyme subunit 2"; Pfam "[ThiF] ThiF family|[UBA_e1_thiolCys] Ubiquitin-activating enzyme Scaffold004 rebuild exon 1527615 1527738 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1527926 1527993 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1528064 1528147 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1528238 1528308 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1528388 1528553 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1528627 1528948 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1529014 1529717 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild exon 1529962 1530420 . + . gene_id "RvY_08846"; transcript_id "RvY_08846.1"; Scaffold004 rebuild transcript 1530972 1533948 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; gene_name "RNF115_126"; annotation "E3 ubiquitin-protein ligase RNF115/126 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-RING_3] zinc-finger"; CDD "RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.19"; KO "K11982"; Scaffold004 rebuild exon 1530972 1531474 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1531651 1532152 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1532236 1532280 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1532360 1532430 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1532495 1532658 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1532742 1533369 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1533489 1533552 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1533647 1533808 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild exon 1533889 1533948 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.1"; Scaffold004 rebuild transcript 1530972 1533948 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; gene_name "RNF115_126"; annotation "E3 ubiquitin-protein ligase RNF115/126 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-RING_3] zinc-finger"; CDD "RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.19"; KO "K11982"; Scaffold004 rebuild exon 1530972 1531474 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1531651 1532152 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1532236 1532280 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1532360 1532430 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1532495 1532658 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1532742 1533103 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1533227 1533369 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1533489 1533552 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1533647 1533808 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild exon 1533889 1533948 . - . gene_id "RvY_08847"; transcript_id "RvY_08847.2"; Scaffold004 rebuild transcript 1535618 1537277 . - . gene_id "RvY_08848"; transcript_id "RvY_08848.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold004 rebuild exon 1535618 1535917 . - . gene_id "RvY_08848"; transcript_id "RvY_08848.1"; Scaffold004 rebuild exon 1536302 1536644 . - . gene_id "RvY_08848"; transcript_id "RvY_08848.1"; Scaffold004 rebuild exon 1536985 1537277 . - . gene_id "RvY_08848"; transcript_id "RvY_08848.1"; Scaffold004 rebuild transcript 1538918 1540606 . + . gene_id "RvY_08849"; transcript_id "RvY_08849.1"; annotation "hypothetical protein."; Pfam "[Sin_N] Sin-like protein conserved region"; Scaffold004 rebuild exon 1538918 1538923 . + . gene_id "RvY_08849"; transcript_id "RvY_08849.1"; Scaffold004 rebuild exon 1538996 1539500 . + . gene_id "RvY_08849"; transcript_id "RvY_08849.1"; Scaffold004 rebuild exon 1539578 1539894 . + . gene_id "RvY_08849"; transcript_id "RvY_08849.1"; Scaffold004 rebuild exon 1540013 1540606 . + . gene_id "RvY_08849"; transcript_id "RvY_08849.1"; Scaffold004 rebuild transcript 1541888 1548117 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; gene_name "LA"; annotation "hypothetical protein."; Pfam "[La]"; CDD "Domain in the RNA-binding Lupus La protein; unknown function."; Scaffold004 rebuild exon 1541888 1542409 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1542710 1543097 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1543165 1543376 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1543502 1543624 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1543704 1543746 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1543867 1544157 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1544222 1544555 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1544944 1545022 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1545123 1545293 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1545385 1545488 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1545610 1545825 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1545893 1546060 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild exon 1548108 1548117 . - . gene_id "RvY_08850"; transcript_id "RvY_08850.1"; Scaffold004 rebuild transcript 1548908 1549470 . + . gene_id "RvY_08851"; transcript_id "RvY_08851.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1548908 1549033 . + . gene_id "RvY_08851"; transcript_id "RvY_08851.1"; Scaffold004 rebuild exon 1549453 1549470 . + . gene_id "RvY_08851"; transcript_id "RvY_08851.1"; Scaffold004 rebuild transcript 1549556 1549880 . - . gene_id "RvY_08852"; transcript_id "RvY_08852.1"; gene_name "beta_tubulin"; annotation "putative Tubulin beta-3 chain"; CDD "The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins."; similar_genes "TBB3_CHICK(e-value:6.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 1549556 1549734 . - . gene_id "RvY_08852"; transcript_id "RvY_08852.1"; Scaffold004 rebuild exon 1549808 1549880 . - . gene_id "RvY_08852"; transcript_id "RvY_08852.1"; Scaffold004 rebuild transcript 1550098 1550898 . - . gene_id "RvY_08853"; transcript_id "RvY_08853.1"; gene_name "beta_tubulin"; annotation "hypothetical protein."; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Tubulin_C] Tubulin C-terminal domain"; CDD "The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins."; similar_genes "TBB5_HUMAN(e-value:6.7e-25;bit-score:112.0)"; Scaffold004 rebuild exon 1550098 1550280 . - . gene_id "RvY_08853"; transcript_id "RvY_08853.1"; Scaffold004 rebuild exon 1550725 1550898 . - . gene_id "RvY_08853"; transcript_id "RvY_08853.1"; Scaffold004 rebuild transcript 1551197 1551884 . + . gene_id "RvY_08854"; transcript_id "RvY_08854.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1551197 1551328 . + . gene_id "RvY_08854"; transcript_id "RvY_08854.1"; Scaffold004 rebuild exon 1551771 1551884 . + . gene_id "RvY_08854"; transcript_id "RvY_08854.1"; Scaffold004 rebuild transcript 1552089 1555776 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; gene_name "DPP3"; annotation "putative Dipeptidyl peptidase 3"; Pfam "[Peptidase_M49] Peptidase family M49"; EC "EC3.4.14.4"; KO "K01277"; similar_genes "DPP3_NEMVE(e-value:1.8e-50;bit-score:197.0)"; Scaffold004 rebuild exon 1552089 1552263 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1552372 1552511 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1552594 1552623 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1552689 1552844 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1552915 1553137 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1553227 1553515 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1553578 1553786 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1553863 1553993 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1554075 1554152 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1554222 1554466 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1554535 1554745 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1554824 1555022 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1555147 1555358 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild exon 1555684 1555776 . - . gene_id "RvY_08855"; transcript_id "RvY_08855.1"; Scaffold004 rebuild transcript 1556485 1556982 . - . gene_id "RvY_08856"; transcript_id "RvY_08856.1"; gene_name "SSR4"; annotation "translocon-associated protein subunit delta"; Pfam "[TRAP-delta] Translocon-associated protein, delta subunit precursor (TRAP-delta)"; KO "K04571"; Scaffold004 rebuild exon 1556485 1556982 . - . gene_id "RvY_08856"; transcript_id "RvY_08856.1"; Scaffold004 rebuild transcript 1557501 1558099 . + . gene_id "RvY_08857"; transcript_id "RvY_08857.1"; annotation "putative Vesicle transport protein SFT2A"; Pfam "[Got1] Got1/Sft2-like family"; similar_genes "SFT2A_HUMAN(e-value:3.1e-31;bit-score:133.0)"; Scaffold004 rebuild exon 1557501 1557590 . + . gene_id "RvY_08857"; transcript_id "RvY_08857.1"; Scaffold004 rebuild exon 1557704 1558099 . + . gene_id "RvY_08857"; transcript_id "RvY_08857.1"; Scaffold004 rebuild transcript 1558829 1563293 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; annotation "putative Tubby protein homolog"; Pfam "[Tub] Tub family"; similar_genes "TUB_RAT(e-value:4.4e-39;bit-score:159.0)"; Scaffold004 rebuild exon 1558829 1558962 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1559061 1559144 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1559242 1559329 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1559402 1559500 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1559608 1559725 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1559800 1559915 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1559975 1560205 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1560326 1560495 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1560607 1560756 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1561435 1561627 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild exon 1563243 1563293 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.1"; Scaffold004 rebuild transcript 1558829 1561944 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; annotation "putative Tubby protein homolog"; Pfam "[Tub] Tub family"; similar_genes "TUB_RAT(e-value:4.4e-39;bit-score:159.0)"; Scaffold004 rebuild exon 1558829 1558962 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1559061 1559144 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1559242 1559329 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1559402 1559500 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1559608 1559725 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1559800 1559915 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1559975 1560205 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1560326 1560495 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1560607 1560756 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1561435 1561627 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild exon 1561906 1561944 . - . gene_id "RvY_08858"; transcript_id "RvY_08858.2"; Scaffold004 rebuild transcript 1564471 1564713 . + . gene_id "RvY_08859"; transcript_id "RvY_08859.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1564471 1564713 . + . gene_id "RvY_08859"; transcript_id "RvY_08859.1"; Scaffold004 rebuild transcript 1564637 1565110 . - . gene_id "RvY_08860"; transcript_id "RvY_08860.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1564637 1564977 . - . gene_id "RvY_08860"; transcript_id "RvY_08860.1"; Scaffold004 rebuild exon 1565044 1565110 . - . gene_id "RvY_08860"; transcript_id "RvY_08860.1"; Scaffold004 rebuild transcript 1565561 1567466 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1565561 1565631 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; Scaffold004 rebuild exon 1565702 1566503 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; Scaffold004 rebuild exon 1566572 1566886 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; Scaffold004 rebuild exon 1567003 1567137 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; Scaffold004 rebuild exon 1567212 1567262 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; Scaffold004 rebuild exon 1567347 1567466 . + . gene_id "RvY_08861"; transcript_id "RvY_08861.1"; Scaffold004 rebuild transcript 1568150 1569912 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; gene_name "fcl"; annotation "GDP-L-fucose synthase"; Pfam "[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain"; EC "EC1.1.1.271"; KO "K02377"; similar_genes "FCL_HUMAN(e-value:5.2e-131;bit-score:464.0)"; Scaffold004 rebuild exon 1568150 1568313 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1568398 1568512 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1568580 1568625 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1568714 1568796 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1568902 1568975 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1569039 1569172 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1569291 1569422 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1569517 1569596 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1569685 1569784 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild exon 1569857 1569912 . + . gene_id "RvY_08862"; transcript_id "RvY_08862.1"; Scaffold004 rebuild transcript 1570125 1572855 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; gene_name "acyl_WS_DGAT"; annotation "hypothetical protein."; Pfam "[WES_acyltransf] Wax ester synthase-like Acyl-CoA acyltransferase domain|[DUF1298]"; CDD "acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, Scaffold004 rebuild exon 1570125 1570367 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild exon 1570427 1570627 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild exon 1570713 1570802 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild exon 1570882 1571294 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild exon 1571580 1572034 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild exon 1572092 1572304 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild exon 1572386 1572855 . - . gene_id "RvY_08863"; transcript_id "RvY_08863.1"; Scaffold004 rebuild transcript 1576298 1576552 . + . gene_id "RvY_08864"; transcript_id "RvY_08864.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C78] Peptidase family C78"; EC "EC3.4.22.-"; similar_genes "UFSP2_DANRE(e-value:5.1e-06;bit-score:49.0)"; Scaffold004 rebuild exon 1576298 1576552 . + . gene_id "RvY_08864"; transcript_id "RvY_08864.1"; Scaffold004 rebuild transcript 1578037 1578237 . - . gene_id "RvY_08865"; transcript_id "RvY_08865.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1578037 1578237 . - . gene_id "RvY_08865"; transcript_id "RvY_08865.1"; Scaffold004 rebuild transcript 1580765 1583756 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; gene_name "FLVCR"; annotation "putative Uncharacterized MFS-type transporter C09D4.1"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; KO "K08220"; similar_genes "YC91_CAEEL(e-value:1.2e-45;bit-score:181.0)"; Scaffold004 rebuild exon 1580765 1581300 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1581551 1581738 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1581849 1581931 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1582203 1582386 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1582575 1582780 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1582986 1583089 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1583178 1583288 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1583361 1583578 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild exon 1583647 1583756 . + . gene_id "RvY_08866"; transcript_id "RvY_08866.1"; Scaffold004 rebuild transcript 1584334 1585396 . - . gene_id "RvY_08867"; transcript_id "RvY_08867.1"; gene_name "K04708"; annotation "putative 3-ketodihydrosphingosine reductase"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]|[NAD_binding_10] NADH(P)-binding"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "EC1.1.1.102"; KO "K04708"; similar_genes "KDSR_HUMAN(e-value:1.8e-44;bit-score:177.0)"; Scaffold004 rebuild exon 1584334 1584962 . - . gene_id "RvY_08867"; transcript_id "RvY_08867.1"; Scaffold004 rebuild exon 1585027 1585396 . - . gene_id "RvY_08867"; transcript_id "RvY_08867.1"; Scaffold004 rebuild transcript 1586415 1587542 . - . gene_id "RvY_08868"; transcript_id "RvY_08868.1"; gene_name "RNF113A"; annotation "putative RING finger protein 113A"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; CDD "Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]"; KO "K13127"; similar_genes "R113A_BOVIN(e-value:3.3e-37;bit-score:153.0)"; Scaffold004 rebuild exon 1586415 1587020 . - . gene_id "RvY_08868"; transcript_id "RvY_08868.1"; Scaffold004 rebuild exon 1587105 1587542 . - . gene_id "RvY_08868"; transcript_id "RvY_08868.1"; Scaffold004 rebuild transcript 1588076 1588381 . - . gene_id "RvY_08869"; transcript_id "RvY_08869.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1588076 1588381 . - . gene_id "RvY_08869"; transcript_id "RvY_08869.1"; Scaffold004 rebuild transcript 1588121 1588417 . + . gene_id "RvY_08870"; transcript_id "RvY_08870.1"; gene_name "SNRPE"; annotation "putative Probable small nuclear ribonucleoprotein E"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit E binds subunits F and G to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K11097"; similar_genes "RUXE_DROME(e-value:2.1e-32;bit-score:137.0)"; Scaffold004 rebuild exon 1588121 1588417 . + . gene_id "RvY_08870"; transcript_id "RvY_08870.1"; Scaffold004 rebuild transcript 1601542 1618353 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; gene_name "AAA"; annotation "putative Neuron navigator 2"; Pfam "[AAA_14] AAA domain|[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment."; EC "EC3.6.1.-"; similar_genes "NAV2_HUMAN(e-value:1.2e-32;bit-score:137.0)"; Scaffold004 rebuild exon 1601542 1601544 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1602079 1602151 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1602212 1602398 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1602455 1602597 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1607073 1607276 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1607396 1608971 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1612496 1613192 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1613409 1614164 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1614265 1614354 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1614418 1614501 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1614567 1614720 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1614806 1614939 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1615340 1615569 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1615642 1615798 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1615871 1615994 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1616293 1616694 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1616763 1616934 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1617008 1617118 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1617192 1617293 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1617368 1617439 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1617513 1617828 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1617897 1618184 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild exon 1618258 1618353 . + . gene_id "RvY_08871"; transcript_id "RvY_08871.1"; Scaffold004 rebuild transcript 1618621 1621329 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; gene_name "COG5593"; annotation "hypothetical protein."; Pfam "[CBF] CBF/Mak21 family"; CDD "Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]"; KO "K14832"; similar_genes "CEBPZ_HUMAN(e-value:1.1e-18;bit-score:91.0)"; Scaffold004 rebuild exon 1618621 1618840 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1618916 1619059 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1619127 1619326 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1619409 1619624 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1619738 1620223 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1620349 1620659 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1620721 1620883 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1620957 1621169 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild exon 1621228 1621329 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.1"; Scaffold004 rebuild transcript 1618621 1621329 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; gene_name "COG5593"; annotation "hypothetical protein."; Pfam "[CBF] CBF/Mak21 family"; CDD "Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]"; KO "K14832"; similar_genes "CEBPZ_HUMAN(e-value:1.1e-18;bit-score:91.0)"; Scaffold004 rebuild exon 1618621 1618840 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1618916 1619059 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1619127 1619326 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1619409 1619624 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1619738 1620187 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1620349 1620659 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1620721 1620883 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1620957 1621169 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild exon 1621228 1621329 . - . gene_id "RvY_08872"; transcript_id "RvY_08872.2"; Scaffold004 rebuild transcript 1622074 1623611 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; gene_name "PGAM"; annotation "hypothetical protein."; Pfam "[His_Phos_1] Histidine phosphatase superfamily (branch 1)"; CDD "Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein."; KO "K14634"; Scaffold004 rebuild exon 1622074 1622556 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; Scaffold004 rebuild exon 1622621 1622731 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; Scaffold004 rebuild exon 1622804 1622875 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; Scaffold004 rebuild exon 1623035 1623156 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; Scaffold004 rebuild exon 1623254 1623291 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; Scaffold004 rebuild exon 1623526 1623611 . - . gene_id "RvY_08873"; transcript_id "RvY_08873.1"; Scaffold004 rebuild transcript 1624450 1630240 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; gene_name "Lipase_3"; annotation "putative Sn1-specific diacylglycerol lipase alpha"; Pfam "[Lipase_3] Lipase (class 3)"; CDD "Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold004 rebuild exon 1624450 1625095 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1625214 1625427 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1625513 1625631 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1625701 1625721 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1625796 1625992 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1626056 1626340 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1626444 1626524 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1626618 1626790 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1626861 1626912 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627014 1627076 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627167 1627274 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627463 1627519 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627589 1627666 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627728 1627767 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627843 1627880 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1627962 1628018 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1628092 1628170 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1628302 1628373 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1628557 1628653 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1628739 1628834 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1628921 1629129 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild exon 1630146 1630240 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.1"; Scaffold004 rebuild transcript 1625484 1628972 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; gene_name "Lipase_3"; annotation "putative Sn1-specific diacylglycerol lipase alpha"; Pfam "[Lipase_3] Lipase (class 3)"; CDD "Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold004 rebuild exon 1625484 1625631 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1625701 1625721 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1625796 1625992 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1626056 1626340 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1626444 1626524 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1626618 1626790 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1626861 1626912 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627014 1627076 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627167 1627274 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627463 1627519 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627589 1627666 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627728 1627767 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627843 1627880 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1627962 1628018 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1628092 1628170 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1628302 1628373 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1628557 1628653 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1628739 1628834 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild exon 1628921 1628972 . - . gene_id "RvY_08874"; transcript_id "RvY_08874.2"; Scaffold004 rebuild transcript 1631775 1636345 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; gene_name "RAD54L2"; annotation "RAD54-like protein 2 [EC:3.6.1.-]"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10876"; similar_genes "ARIP4_HUMAN(e-value:5.7e-22;bit-score:102.0)"; Scaffold004 rebuild exon 1631775 1632225 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1632409 1632752 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1632833 1632889 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1633072 1633104 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1633170 1633223 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1633301 1633920 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1633984 1634071 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1634149 1634220 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1634339 1634396 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1634523 1634586 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1634649 1635108 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1635372 1635990 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild exon 1636107 1636345 . - . gene_id "RvY_08875"; transcript_id "RvY_08875.1"; Scaffold004 rebuild transcript 1636940 1638423 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_32] Methyltransferase domain"; similar_genes "CL026_HUMAN(e-value:3.5e-11;bit-score:66.0)"; Scaffold004 rebuild exon 1636940 1637047 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; Scaffold004 rebuild exon 1637142 1637288 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; Scaffold004 rebuild exon 1637354 1637679 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; Scaffold004 rebuild exon 1637748 1637869 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; Scaffold004 rebuild exon 1637952 1638244 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; Scaffold004 rebuild exon 1638334 1638423 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.1"; Scaffold004 rebuild transcript 1636940 1638349 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; annotation "hypothetical protein."; Pfam "[Methyltransf_32] Methyltransferase domain"; similar_genes "CL026_HUMAN(e-value:3.5e-11;bit-score:66.0)"; Scaffold004 rebuild exon 1636940 1637047 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; Scaffold004 rebuild exon 1637142 1637288 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; Scaffold004 rebuild exon 1637354 1637679 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; Scaffold004 rebuild exon 1637748 1637869 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; Scaffold004 rebuild exon 1637952 1638244 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; Scaffold004 rebuild exon 1638329 1638349 . - . gene_id "RvY_08876"; transcript_id "RvY_08876.2"; Scaffold004 rebuild transcript 1641425 1641754 . - . gene_id "RvY_08877"; transcript_id "RvY_08877.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1641425 1641754 . - . gene_id "RvY_08877"; transcript_id "RvY_08877.1"; Scaffold004 rebuild transcript 1642530 1642802 . - . gene_id "RvY_08878"; transcript_id "RvY_08878.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1642530 1642802 . - . gene_id "RvY_08878"; transcript_id "RvY_08878.1"; Scaffold004 rebuild transcript 1645600 1647852 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; gene_name "K06874"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[zf-ZPR1] ZPR1 zinc-finger domain"; CDD "(1)Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins."; KO "K06874"; similar_genes "(1)ZPR1_SCHPO(e-value:5.6e-20;bit-score:95.0)(2)ZPR1_SCHPO(e-value:1.1e-14;bit-score:78.0)"; Scaffold004 rebuild exon 1645600 1645692 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1645780 1645941 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1646105 1646254 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1646336 1646431 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1646501 1646623 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1646726 1646782 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1646850 1646916 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1647001 1647161 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1647276 1647386 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1647446 1647535 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1647593 1647658 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild exon 1647724 1647852 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.1"; Scaffold004 rebuild transcript 1645600 1647254 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; gene_name "K06874"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[zf-ZPR1] ZPR1 zinc-finger domain"; CDD "(1)Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins."; KO "K06874"; similar_genes "(1)ZPR1_SCHPO(e-value:5.6e-20;bit-score:95.0)(2)ZPR1_SCHPO(e-value:1.1e-14;bit-score:78.0)"; Scaffold004 rebuild exon 1645600 1645692 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1645780 1645941 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1646105 1646254 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1646336 1646431 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1646501 1646623 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1646726 1646782 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1646850 1646916 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild exon 1647001 1647254 . + . gene_id "RvY_08879"; transcript_id "RvY_08879.2"; Scaffold004 rebuild transcript 1647979 1648727 . - . gene_id "RvY_08880"; transcript_id "RvY_08880.1"; gene_name "DUF716"; annotation "hypothetical protein."; Pfam "[DUF716] Family of unknown function (DUF716)"; CDD "Family of unknown function (DUF716). This family is equally distributed in both metazoa and plants. Annotation associated with the Nicotiana tabacum TMV response-related gene product suggests that it may be involved in response to viral attack in plants. However, no clear function has been assigned to this family."; Scaffold004 rebuild exon 1647979 1648508 . - . gene_id "RvY_08880"; transcript_id "RvY_08880.1"; Scaffold004 rebuild exon 1648574 1648727 . - . gene_id "RvY_08880"; transcript_id "RvY_08880.1"; Scaffold004 rebuild transcript 1649916 1650759 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.1"; gene_name "(1)Lipocalin_2(2)Blc"; annotation "hypothetical protein."; Pfam "[Lipocalin_2] Lipocalin-like domain"; CDD "(1)Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.(2)Bacterial lipocalin [Cell envelope biogenesis, outer membrane]"; Scaffold004 rebuild exon 1649916 1650023 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.1"; Scaffold004 rebuild exon 1650123 1650155 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.1"; Scaffold004 rebuild exon 1650233 1650384 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.1"; Scaffold004 rebuild exon 1650454 1650539 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.1"; Scaffold004 rebuild exon 1650608 1650759 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.1"; Scaffold004 rebuild transcript 1649916 1650592 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.2"; gene_name "(1)Lipocalin_2(2)Blc"; annotation "hypothetical protein."; Pfam "[Lipocalin_2] Lipocalin-like domain"; CDD "(1)Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.(2)Bacterial lipocalin [Cell envelope biogenesis, outer membrane]"; Scaffold004 rebuild exon 1649916 1650023 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.2"; Scaffold004 rebuild exon 1650123 1650155 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.2"; Scaffold004 rebuild exon 1650233 1650384 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.2"; Scaffold004 rebuild exon 1650454 1650592 . + . gene_id "RvY_08881"; transcript_id "RvY_08881.2"; Scaffold004 rebuild transcript 1650777 1651189 . + . gene_id "RvY_08882"; transcript_id "RvY_08882.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1650777 1650877 . + . gene_id "RvY_08882"; transcript_id "RvY_08882.1"; Scaffold004 rebuild exon 1650946 1651189 . + . gene_id "RvY_08882"; transcript_id "RvY_08882.1"; Scaffold004 rebuild transcript 1651146 1652313 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; gene_name "(2)K01175"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; KO "(2)K01175"; Scaffold004 rebuild exon 1651146 1651183 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; Scaffold004 rebuild exon 1651273 1651364 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; Scaffold004 rebuild exon 1651459 1651714 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; Scaffold004 rebuild exon 1651790 1651943 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; Scaffold004 rebuild exon 1652024 1652196 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; Scaffold004 rebuild exon 1652295 1652313 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.1"; Scaffold004 rebuild transcript 1651294 1652313 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.2"; gene_name "(2)K01175"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; KO "(2)K01175"; Scaffold004 rebuild exon 1651294 1651387 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.2"; Scaffold004 rebuild exon 1651459 1651714 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.2"; Scaffold004 rebuild exon 1651790 1651943 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.2"; Scaffold004 rebuild exon 1652024 1652196 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.2"; Scaffold004 rebuild exon 1652295 1652313 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.2"; Scaffold004 rebuild transcript 1651419 1652313 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.3"; gene_name "(2)K01175"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; KO "(2)K01175"; Scaffold004 rebuild exon 1651419 1651714 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.3"; Scaffold004 rebuild exon 1651790 1651943 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.3"; Scaffold004 rebuild exon 1652024 1652196 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.3"; Scaffold004 rebuild exon 1652295 1652313 . - . gene_id "RvY_08883"; transcript_id "RvY_08883.3"; Scaffold004 rebuild transcript 1655475 1656637 . + . gene_id "RvY_08884"; transcript_id "RvY_08884.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1655475 1656214 . + . gene_id "RvY_08884"; transcript_id "RvY_08884.1"; Scaffold004 rebuild exon 1656442 1656637 . + . gene_id "RvY_08884"; transcript_id "RvY_08884.1"; Scaffold004 rebuild transcript 1656653 1657080 . - . gene_id "RvY_08885"; transcript_id "RvY_08885.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1656653 1656849 . - . gene_id "RvY_08885"; transcript_id "RvY_08885.1"; Scaffold004 rebuild exon 1657032 1657080 . - . gene_id "RvY_08885"; transcript_id "RvY_08885.1"; Scaffold004 rebuild transcript 1660758 1663484 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; gene_name "UAS_FAF1"; annotation "hypothetical protein."; Pfam "[ubiquitin] Ubiquitin family|[UBX]"; CDD "UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear translocation of the p65 subunit. FAF1 also interacts with valosin-containing protein (VCP), which is involved in the ubiquitin-proteosome pathway."; Scaffold004 rebuild exon 1660758 1660863 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1661002 1661093 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1661211 1661287 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1661387 1661483 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1661545 1661631 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1661704 1661799 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1661883 1661994 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1662077 1662140 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1662220 1662301 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1662411 1662788 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1662846 1662926 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1663035 1663328 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild exon 1663404 1663484 . + . gene_id "RvY_08886"; transcript_id "RvY_08886.1"; Scaffold004 rebuild transcript 1663871 1664897 . - . gene_id "RvY_08887"; transcript_id "RvY_08887.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1663871 1664044 . - . gene_id "RvY_08887"; transcript_id "RvY_08887.1"; Scaffold004 rebuild exon 1664607 1664897 . - . gene_id "RvY_08887"; transcript_id "RvY_08887.1"; Scaffold004 rebuild transcript 1664357 1665645 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; annotation "hypothetical protein."; Pfam "[Lipocalin_2] Lipocalin-like domain|[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; Scaffold004 rebuild exon 1664357 1664491 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild exon 1664604 1664728 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild exon 1664810 1664968 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild exon 1665098 1665177 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild exon 1665267 1665322 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild exon 1665399 1665460 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild exon 1665531 1665645 . + . gene_id "RvY_08888"; transcript_id "RvY_08888.1"; Scaffold004 rebuild transcript 1666172 1667080 . - . gene_id "RvY_08889"; transcript_id "RvY_08889.1"; gene_name "LOH1CR12"; annotation "hypothetical protein."; Pfam "[LOH1CR12] Tumour suppressor protein"; CDD "Tumour suppressor protein. This is a region of 130 amino acids that is the most conserved region of hypothetical proteins involved in loss of heterozygosity and thus tumour suppression. The exact function is not known."; Scaffold004 rebuild exon 1666172 1666384 . - . gene_id "RvY_08889"; transcript_id "RvY_08889.1"; Scaffold004 rebuild exon 1666447 1666635 . - . gene_id "RvY_08889"; transcript_id "RvY_08889.1"; Scaffold004 rebuild exon 1666712 1666890 . - . gene_id "RvY_08889"; transcript_id "RvY_08889.1"; Scaffold004 rebuild exon 1666966 1667080 . - . gene_id "RvY_08889"; transcript_id "RvY_08889.1"; Scaffold004 rebuild transcript 1667113 1667559 . + . gene_id "RvY_08890"; transcript_id "RvY_08890.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1667113 1667559 . + . gene_id "RvY_08890"; transcript_id "RvY_08890.1"; Scaffold004 rebuild transcript 1668319 1669128 . + . gene_id "RvY_08891"; transcript_id "RvY_08891.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1668319 1668593 . + . gene_id "RvY_08891"; transcript_id "RvY_08891.1"; Scaffold004 rebuild exon 1668960 1669128 . + . gene_id "RvY_08891"; transcript_id "RvY_08891.1"; Scaffold004 rebuild transcript 1669750 1670430 . + . gene_id "RvY_08892"; transcript_id "RvY_08892.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1669750 1670430 . + . gene_id "RvY_08892"; transcript_id "RvY_08892.1"; Scaffold004 rebuild transcript 1670496 1670948 . + . gene_id "RvY_08893"; transcript_id "RvY_08893.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1670496 1670948 . + . gene_id "RvY_08893"; transcript_id "RvY_08893.1"; Scaffold004 rebuild transcript 1671116 1672737 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold004 rebuild exon 1671116 1671312 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; Scaffold004 rebuild exon 1671387 1671653 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; Scaffold004 rebuild exon 1671838 1672022 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; Scaffold004 rebuild exon 1672104 1672199 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; Scaffold004 rebuild exon 1672266 1672401 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; Scaffold004 rebuild exon 1672575 1672737 . - . gene_id "RvY_08894"; transcript_id "RvY_08894.1"; Scaffold004 rebuild transcript 1674014 1677815 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; gene_name "CPT1"; annotation "putative Carnitine O-palmitoyltransferase 1, muscle isoform"; Pfam "[Carn_acyltransf] Choline/Carnitine o-acyltransferase"; EC "EC2.3.1.21"; KO "K08765"; similar_genes "CPT1B_BOVIN(e-value:1.2e-45;bit-score:181.0)"; Scaffold004 rebuild exon 1674014 1674154 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1674228 1674379 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1674457 1674628 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1674723 1674827 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1674937 1675074 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1675156 1675233 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1675300 1675407 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1675479 1675568 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1675629 1675738 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1675799 1675879 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1675947 1676022 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1676083 1676130 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1676186 1676293 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1676363 1676539 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1676606 1676770 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1676851 1676982 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1677058 1677246 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1677365 1677484 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1677554 1677604 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild exon 1677702 1677815 . + . gene_id "RvY_08895"; transcript_id "RvY_08895.1"; Scaffold004 rebuild transcript 1678569 1682600 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; annotation "putative Carnitine O-palmitoyltransferase 1, muscle isoform"; Pfam "[Carn_acyltransf] Choline/Carnitine o-acyltransferase"; EC "EC2.3.1.21"; similar_genes "CPT1B_HUMAN(e-value:6.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 1678569 1678709 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1678798 1678937 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1679038 1679215 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1679296 1679400 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1679478 1679615 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1679688 1679765 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1679974 1680081 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1680144 1680228 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1680290 1680407 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1680476 1680556 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1680624 1680699 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1680768 1680818 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1680883 1681002 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1681088 1681143 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1681206 1681241 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1681302 1681386 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1681494 1681658 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1681733 1681867 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1681950 1682138 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1682206 1682283 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1682348 1682440 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild exon 1682502 1682600 . + . gene_id "RvY_08896"; transcript_id "RvY_08896.1"; Scaffold004 rebuild transcript 1682994 1684050 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; annotation "hypothetical protein."; Pfam "[NGF] Nerve growth factor family"; Scaffold004 rebuild exon 1682994 1683041 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; Scaffold004 rebuild exon 1683103 1683168 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; Scaffold004 rebuild exon 1683228 1683317 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; Scaffold004 rebuild exon 1683405 1683443 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; Scaffold004 rebuild exon 1683512 1683825 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; Scaffold004 rebuild exon 1683897 1684050 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.1"; Scaffold004 rebuild transcript 1682994 1684114 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; annotation "hypothetical protein."; Pfam "[NGF] Nerve growth factor family"; Scaffold004 rebuild exon 1682994 1683041 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild exon 1683103 1683168 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild exon 1683228 1683317 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild exon 1683405 1683443 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild exon 1683512 1683825 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild exon 1683897 1683971 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild exon 1684045 1684114 . - . gene_id "RvY_08897"; transcript_id "RvY_08897.2"; Scaffold004 rebuild transcript 1684127 1687955 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; gene_name "MCM5"; annotation "DNA replication licensing factor MCM5"; Pfam "[MCM] MCM2/3/5 family|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02209"; similar_genes "MCM5_HUMAN(e-value:5.5e-122;bit-score:434.0)"; Scaffold004 rebuild exon 1684127 1684175 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1684862 1684959 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1685065 1685192 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1685249 1685514 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1685581 1685693 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1685775 1686092 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1686163 1686343 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1686430 1686774 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1686844 1687005 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1687092 1687264 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1687387 1687515 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1687618 1687744 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild exon 1687813 1687955 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.1"; Scaffold004 rebuild transcript 1684858 1687955 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; gene_name "MCM5"; annotation "DNA replication licensing factor MCM5"; Pfam "[MCM] MCM2/3/5 family|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02209"; similar_genes "MCM5_HUMAN(e-value:5.5e-122;bit-score:434.0)"; Scaffold004 rebuild exon 1684858 1684959 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1685065 1685192 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1685249 1685514 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1685581 1685693 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1685775 1686092 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1686163 1686343 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1686430 1686774 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1686844 1687005 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1687092 1687264 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1687387 1687515 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1687618 1687744 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild exon 1687813 1687955 . - . gene_id "RvY_08898"; transcript_id "RvY_08898.2"; Scaffold004 rebuild transcript 1688845 1690839 . - . gene_id "RvY_08899"; transcript_id "RvY_08899.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1688845 1689055 . - . gene_id "RvY_08899"; transcript_id "RvY_08899.1"; Scaffold004 rebuild exon 1689155 1689828 . - . gene_id "RvY_08899"; transcript_id "RvY_08899.1"; Scaffold004 rebuild exon 1689970 1690075 . - . gene_id "RvY_08899"; transcript_id "RvY_08899.1"; Scaffold004 rebuild exon 1690172 1690464 . - . gene_id "RvY_08899"; transcript_id "RvY_08899.1"; Scaffold004 rebuild exon 1690591 1690839 . - . gene_id "RvY_08899"; transcript_id "RvY_08899.1"; Scaffold004 rebuild transcript 1693126 1693602 . + . gene_id "RvY_08900"; transcript_id "RvY_08900.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1693126 1693264 . + . gene_id "RvY_08900"; transcript_id "RvY_08900.1"; Scaffold004 rebuild exon 1693338 1693422 . + . gene_id "RvY_08900"; transcript_id "RvY_08900.1"; Scaffold004 rebuild exon 1693503 1693602 . + . gene_id "RvY_08900"; transcript_id "RvY_08900.1"; Scaffold004 rebuild transcript 1693483 1694052 . - . gene_id "RvY_08901"; transcript_id "RvY_08901.1"; gene_name "hemB"; annotation "putative Delta-aminolevulinic acid dehydratase"; Pfam "[ALAD] Delta-aminolevulinic acid dehydratase"; CDD "Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their Scaffold004 rebuild exon 1693483 1693867 . - . gene_id "RvY_08901"; transcript_id "RvY_08901.1"; Scaffold004 rebuild exon 1693967 1694052 . - . gene_id "RvY_08901"; transcript_id "RvY_08901.1"; Scaffold004 rebuild transcript 1694052 1695028 . - . gene_id "RvY_08902"; transcript_id "RvY_08902.1"; gene_name "hemB"; annotation "porphobilinogen synthase [EC:4.2.1.24]"; Pfam "[ALAD] Delta-aminolevulinic acid dehydratase"; CDD "Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their Scaffold004 rebuild exon 1694052 1694236 . - . gene_id "RvY_08902"; transcript_id "RvY_08902.1"; Scaffold004 rebuild exon 1694334 1694469 . - . gene_id "RvY_08902"; transcript_id "RvY_08902.1"; Scaffold004 rebuild exon 1694529 1694676 . - . gene_id "RvY_08902"; transcript_id "RvY_08902.1"; Scaffold004 rebuild exon 1694859 1695028 . - . gene_id "RvY_08902"; transcript_id "RvY_08902.1"; Scaffold004 rebuild transcript 1698689 1701924 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; annotation "hypothetical protein."; Pfam "(1)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(2)[TPR_1] Tetratricopeptide repeat|(1)[Rapsyn_N] Rapsyn N-terminal myristoylation and linker region"; Scaffold004 rebuild exon 1698689 1699309 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1699481 1699753 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1699847 1699888 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1700827 1700925 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1701079 1701213 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1701273 1701326 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1701546 1701739 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild exon 1701825 1701924 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.1"; Scaffold004 rebuild transcript 1695226 1701924 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; annotation "hypothetical protein."; Pfam "(1)[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(2)[TPR_1] Tetratricopeptide repeat|(1)[Rapsyn_N] Rapsyn N-terminal myristoylation and linker region"; Scaffold004 rebuild exon 1695226 1695462 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1699481 1699753 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1699847 1699888 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1700827 1700925 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1701079 1701213 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1701273 1701326 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1701546 1701739 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild exon 1701825 1701924 . + . gene_id "RvY_08903"; transcript_id "RvY_08903.2"; Scaffold004 rebuild transcript 1703918 1704352 . - . gene_id "RvY_08904"; transcript_id "RvY_08904.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1703918 1704352 . - . gene_id "RvY_08904"; transcript_id "RvY_08904.1"; Scaffold004 rebuild transcript 1704168 1718854 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; gene_name "PDE3"; annotation "cGMP-inhibited 3',5'-cyclic phosphodiesterase B"; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K13296"; similar_genes "PDE3B_HUMAN(e-value:6.4e-89;bit-score:324.0)"; Scaffold004 rebuild exon 1704168 1704712 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1704842 1705690 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1705770 1705845 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1714502 1714572 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1714675 1714876 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1715782 1716175 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1716372 1716577 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1716683 1716855 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1716927 1717027 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1717091 1717127 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1717207 1717298 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1717373 1717471 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1717570 1717670 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1717744 1717947 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1718027 1718188 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1718276 1718459 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1718537 1718727 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild exon 1718810 1718854 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.1"; Scaffold004 rebuild transcript 1710755 1718854 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; gene_name "PDE3"; annotation "cGMP-inhibited 3',5'-cyclic phosphodiesterase B"; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K13296"; similar_genes "PDE3B_HUMAN(e-value:6.4e-89;bit-score:324.0)"; Scaffold004 rebuild exon 1710755 1710835 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1714502 1714572 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1714675 1714876 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1715782 1716175 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1716372 1716577 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1716683 1716855 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1716927 1717027 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1717091 1717127 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1717207 1717298 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1717373 1717471 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1717570 1717670 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1717744 1717947 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1718027 1718188 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1718276 1718459 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1718537 1718727 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild exon 1718810 1718854 . + . gene_id "RvY_08905"; transcript_id "RvY_08905.2"; Scaffold004 rebuild transcript 1721317 1726271 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; gene_name "ARID2"; annotation "AT-rich interactive domain-containing protein 2"; Pfam "[ARID] ARID/BRIGHT DNA binding domain"; CDD "BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure"; KO "K11765"; Scaffold004 rebuild exon 1721317 1721414 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1721506 1721599 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1721759 1721856 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1721927 1722045 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1722102 1722320 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1722387 1722451 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1722527 1722590 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1722720 1722805 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1722888 1722964 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1723044 1723125 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1723231 1723330 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1723403 1723612 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1723670 1723871 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1724014 1724257 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1724357 1724791 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1724880 1725351 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1725566 1725930 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1725999 1726090 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild exon 1726157 1726271 . + . gene_id "RvY_08906"; transcript_id "RvY_08906.1"; Scaffold004 rebuild transcript 1727026 1727647 . - . gene_id "RvY_08907"; transcript_id "RvY_08907.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1727026 1727107 . - . gene_id "RvY_08907"; transcript_id "RvY_08907.1"; Scaffold004 rebuild exon 1727214 1727647 . - . gene_id "RvY_08907"; transcript_id "RvY_08907.1"; Scaffold004 rebuild transcript 1729266 1729472 . + . gene_id "RvY_08908"; transcript_id "RvY_08908.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1729266 1729472 . + . gene_id "RvY_08908"; transcript_id "RvY_08908.1"; Scaffold004 rebuild transcript 1730161 1730442 . - . gene_id "RvY_08909"; transcript_id "RvY_08909.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1730161 1730442 . - . gene_id "RvY_08909"; transcript_id "RvY_08909.1"; Scaffold004 rebuild transcript 1731296 1733019 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1731296 1731646 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.1"; Scaffold004 rebuild exon 1731719 1731883 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.1"; Scaffold004 rebuild exon 1732057 1732698 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.1"; Scaffold004 rebuild exon 1732763 1732894 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.1"; Scaffold004 rebuild exon 1732984 1733019 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.1"; Scaffold004 rebuild transcript 1731662 1732518 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1731662 1731883 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.2"; Scaffold004 rebuild exon 1732057 1732518 . - . gene_id "RvY_08910"; transcript_id "RvY_08910.2"; Scaffold004 rebuild transcript 1734411 1734599 . + . gene_id "RvY_08911"; transcript_id "RvY_08911.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1734411 1734599 . + . gene_id "RvY_08911"; transcript_id "RvY_08911.1"; Scaffold004 rebuild transcript 1738507 1739182 . + . gene_id "RvY_08912"; transcript_id "RvY_08912.1"; annotation "hypothetical protein."; Pfam "[Insulin] Insulin/IGF/Relaxin family"; Scaffold004 rebuild exon 1738507 1738666 . + . gene_id "RvY_08912"; transcript_id "RvY_08912.1"; Scaffold004 rebuild exon 1738737 1738897 . + . gene_id "RvY_08912"; transcript_id "RvY_08912.1"; Scaffold004 rebuild exon 1739012 1739182 . + . gene_id "RvY_08912"; transcript_id "RvY_08912.1"; Scaffold004 rebuild transcript 1739151 1739498 . + . gene_id "RvY_08912"; transcript_id "RvY_08912.2"; annotation "hypothetical protein."; Pfam "[Insulin] Insulin/IGF/Relaxin family"; Scaffold004 rebuild exon 1739151 1739498 . + . gene_id "RvY_08912"; transcript_id "RvY_08912.2"; Scaffold004 rebuild transcript 1740634 1747117 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; gene_name "RPC1"; annotation "DNA-directed RNA polymerase III subunit RPC1"; Pfam "[RNA_pol_Rpb1_4] RNA polymerase Rpb1, domain 4|[RNA_pol_Rpb1_3] RNA polymerase Rpb1, domain 3|[RNA_pol_Rpb1_1] RNA polymerase Rpb1, domain 1|[RNA_pol_Rpb1_2] RNA polymerase Rpb1, domain 2|[RNA_pol_Rpb1_5] RNA polymerase Rpb1, domain 5"; CDD "DNA-directed RNA polymerase subunit alpha; Validated"; EC "EC2.7.7.6"; KO "K03018"; similar_genes "RPC1_DEBHA(e-value:2.9e-74;bit-score:276.0)"; Scaffold004 rebuild exon 1740634 1740839 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1740911 1741046 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1741122 1741271 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1741349 1741666 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1742037 1742765 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1743046 1743477 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1743777 1744200 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1744280 1744417 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1744673 1745230 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1745429 1745864 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1746079 1746391 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1746451 1746553 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1746617 1746789 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild exon 1746854 1747117 . + . gene_id "RvY_08913"; transcript_id "RvY_08913.1"; Scaffold004 rebuild transcript 1747275 1747658 . - . gene_id "RvY_08914"; transcript_id "RvY_08914.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1747275 1747658 . - . gene_id "RvY_08914"; transcript_id "RvY_08914.1"; Scaffold004 rebuild transcript 1747908 1748615 . + . gene_id "RvY_08915"; transcript_id "RvY_08915.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1747908 1748010 . + . gene_id "RvY_08915"; transcript_id "RvY_08915.1"; Scaffold004 rebuild exon 1748124 1748279 . + . gene_id "RvY_08915"; transcript_id "RvY_08915.1"; Scaffold004 rebuild exon 1748389 1748615 . + . gene_id "RvY_08915"; transcript_id "RvY_08915.1"; Scaffold004 rebuild transcript 1748392 1748754 . + . gene_id "RvY_08915"; transcript_id "RvY_08915.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1748392 1748754 . + . gene_id "RvY_08915"; transcript_id "RvY_08915.2"; Scaffold004 rebuild transcript 1749075 1752016 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; gene_name "TBC"; annotation "hypothetical protein."; Pfam "[DUF3548]|[RabGAP-TBC] Rab-GTPase-TBC domain"; CDD "Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases."; similar_genes "TBC17_MOUSE(e-value:9.8e-22;bit-score:101.0)"; Scaffold004 rebuild exon 1749075 1749338 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1749410 1749526 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1749589 1749683 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1749755 1749815 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1749900 1749932 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1750005 1750108 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1750197 1750310 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1750368 1750462 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1750522 1750625 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1750687 1750830 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1750908 1751132 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1751224 1751326 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1751396 1751703 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1751780 1751893 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild exon 1751990 1752016 . - . gene_id "RvY_08916"; transcript_id "RvY_08916.1"; Scaffold004 rebuild transcript 1752727 1754855 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 1752727 1753767 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.1"; Scaffold004 rebuild exon 1753831 1753974 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.1"; Scaffold004 rebuild exon 1754051 1754362 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.1"; Scaffold004 rebuild exon 1754459 1754628 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.1"; Scaffold004 rebuild exon 1754720 1754855 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.1"; Scaffold004 rebuild transcript 1752727 1754004 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 1752727 1753767 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.2"; Scaffold004 rebuild exon 1753831 1754004 . + . gene_id "RvY_08917"; transcript_id "RvY_08917.2"; Scaffold004 rebuild transcript 1755398 1756093 . - . gene_id "RvY_08918"; transcript_id "RvY_08918.1"; annotation "hypothetical protein."; Pfam "[HCNGP] HCNGP-like protein"; similar_genes "S30BP_MOUSE(e-value:3.9e-08;bit-score:56.0)"; Scaffold004 rebuild exon 1755398 1756093 . - . gene_id "RvY_08918"; transcript_id "RvY_08918.1"; Scaffold004 rebuild transcript 1758544 1758864 . + . gene_id "RvY_08919"; transcript_id "RvY_08919.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1758544 1758864 . + . gene_id "RvY_08919"; transcript_id "RvY_08919.1"; Scaffold004 rebuild transcript 1758897 1759900 . + . gene_id "RvY_08920"; transcript_id "RvY_08920.1"; annotation "hypothetical protein."; Pfam "[Beach] Beige/BEACH domain"; Scaffold004 rebuild exon 1758897 1758989 . + . gene_id "RvY_08920"; transcript_id "RvY_08920.1"; Scaffold004 rebuild exon 1759059 1759631 . + . gene_id "RvY_08920"; transcript_id "RvY_08920.1"; Scaffold004 rebuild exon 1759688 1759900 . + . gene_id "RvY_08920"; transcript_id "RvY_08920.1"; Scaffold004 rebuild transcript 1759983 1764559 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; gene_name "Beach"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[Beach] Beige/BEACH domain"; CDD "BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins."; similar_genes "YSM1_CAEEL(e-value:1.9e-22;bit-score:104.0)"; Scaffold004 rebuild exon 1759983 1760113 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1760196 1760713 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1760806 1761243 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1761323 1761951 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1762057 1762393 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1762453 1762809 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1762873 1763206 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1763300 1763445 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1763540 1764037 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild exon 1764129 1764559 . + . gene_id "RvY_08921"; transcript_id "RvY_08921.1"; Scaffold004 rebuild transcript 1764996 1766930 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; gene_name "TSG101"; annotation "ESCRT-I complex subunit TSG101"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme|[Vps23_core] Vps23 core domain|[UEV]"; KO "K12183"; similar_genes "TS101_MOUSE(e-value:1.3e-21;bit-score:101.0)"; Scaffold004 rebuild exon 1764996 1765076 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1765155 1765257 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1765333 1765466 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1765530 1765622 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1765706 1765971 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1766052 1766295 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1766367 1766599 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1766700 1766787 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild exon 1766883 1766930 . - . gene_id "RvY_08922"; transcript_id "RvY_08922.1"; Scaffold004 rebuild transcript 1767719 1769673 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; gene_name "PP2Cc"; annotation "hypothetical protein."; Pfam "[PP2C_2] Protein phosphatase 2C|[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.16"; similar_genes "ILKAP_BOVIN(e-value:7.6e-07;bit-score:52.0)"; Scaffold004 rebuild exon 1767719 1767815 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1767943 1768095 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1768211 1768328 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1768409 1768518 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1768608 1768701 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1768783 1768870 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1768946 1769067 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1769168 1769238 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1769320 1769453 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild exon 1769539 1769673 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.1"; Scaffold004 rebuild transcript 1767719 1769673 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; gene_name "PP2Cc"; annotation "hypothetical protein."; Pfam "[PP2C_2] Protein phosphatase 2C|[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.16"; similar_genes "ILKAP_BOVIN(e-value:7.6e-07;bit-score:52.0)"; Scaffold004 rebuild exon 1767719 1767815 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1767943 1768095 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1768211 1768328 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1768409 1768518 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1768608 1768701 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1768786 1768870 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1768946 1769067 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1769168 1769238 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1769320 1769453 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild exon 1769539 1769673 . + . gene_id "RvY_08923"; transcript_id "RvY_08923.2"; Scaffold004 rebuild transcript 1769845 1772159 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; gene_name "alkPPc"; annotation "putative Alkaline phosphatase, tissue-nonspecific isozyme"; Pfam "[Alk_phosphatase] Alkaline phosphatase"; CDD "Alkaline phosphatase homologues."; EC "EC3.1.3.1"; similar_genes "PPBT_CHICK(e-value:1.8e-31;bit-score:134.0)"; Scaffold004 rebuild exon 1769845 1769980 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1770045 1770117 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1770198 1770329 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1770390 1770440 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1770501 1770764 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1770829 1771024 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1771089 1771181 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1771258 1771346 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1771427 1771532 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1771616 1771684 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1771808 1772028 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild exon 1772090 1772159 . - . gene_id "RvY_08924"; transcript_id "RvY_08924.1"; Scaffold004 rebuild transcript 1773158 1774631 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; gene_name "ATPeVE"; annotation "V-type proton ATPase subunit E 1"; Pfam "[vATP-synt_E] ATP synthase (E/31 kDa) subunit"; CDD "ATP synthase (E/31 kDa) subunit. This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit."; EC "EC3.6.3.14"; KO "K02150"; similar_genes "VATE1_BOVIN(e-value:7.3e-54;bit-score:208.0)"; Scaffold004 rebuild exon 1773158 1773190 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1773316 1773381 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1773483 1773592 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1773664 1773730 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1773791 1773880 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1773969 1774037 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1774122 1774216 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild exon 1774283 1774631 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.1"; Scaffold004 rebuild transcript 1773158 1774519 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; gene_name "ATPeVE"; annotation "V-type proton ATPase subunit E 1"; Pfam "[vATP-synt_E] ATP synthase (E/31 kDa) subunit"; CDD "ATP synthase (E/31 kDa) subunit. This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit."; EC "EC3.6.3.14"; KO "K02150"; similar_genes "VATE1_BOVIN(e-value:7.3e-54;bit-score:208.0)"; Scaffold004 rebuild exon 1773158 1773190 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1773316 1773381 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1773483 1773592 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1773664 1773730 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1773791 1773880 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1773969 1774037 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1774122 1774216 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1774283 1774370 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild exon 1774457 1774519 . + . gene_id "RvY_08925"; transcript_id "RvY_08925.2"; Scaffold004 rebuild transcript 1775026 1776323 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15107"; similar_genes "CMC1_CAEEL(e-value:2.2e-23;bit-score:107.0)"; Scaffold004 rebuild exon 1775026 1775245 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild exon 1775306 1775381 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild exon 1775454 1775556 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild exon 1775639 1775817 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild exon 1775882 1776000 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild exon 1776082 1776225 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild exon 1776310 1776323 . - . gene_id "RvY_08926"; transcript_id "RvY_08926.1"; Scaffold004 rebuild transcript 1778163 1779306 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; gene_name "RAB21"; annotation "Ras-related protein Rab-21"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07890"; similar_genes "RAB21_BOVIN(e-value:1.9e-73;bit-score:273.0)"; Scaffold004 rebuild exon 1778163 1778303 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; Scaffold004 rebuild exon 1778411 1778470 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; Scaffold004 rebuild exon 1778570 1778677 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; Scaffold004 rebuild exon 1778766 1778884 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; Scaffold004 rebuild exon 1778981 1779069 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; Scaffold004 rebuild exon 1779173 1779306 . + . gene_id "RvY_08927"; transcript_id "RvY_08927.1"; Scaffold004 rebuild transcript 1780124 1780783 . - . gene_id "RvY_08928"; transcript_id "RvY_08928.1"; gene_name "ERG2_Sigma1R"; annotation "hypothetical protein."; Pfam "[ERG2_Sigma1R] ERG2 and Sigma1 receptor like protein"; CDD "ERG2 and Sigma1 receptor like protein. This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum, which interacts with endogenous steroid hormones, such as progesterone and testosterone. It also binds the sigma ligands, which are are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia."; similar_genes "OPRS1_TARGR(e-value:6.0e-11;bit-score:65.0)"; Scaffold004 rebuild exon 1780124 1780368 . - . gene_id "RvY_08928"; transcript_id "RvY_08928.1"; Scaffold004 rebuild exon 1780447 1780480 . - . gene_id "RvY_08928"; transcript_id "RvY_08928.1"; Scaffold004 rebuild exon 1780538 1780596 . - . gene_id "RvY_08928"; transcript_id "RvY_08928.1"; Scaffold004 rebuild exon 1780669 1780783 . - . gene_id "RvY_08928"; transcript_id "RvY_08928.1"; Scaffold004 rebuild transcript 1781959 1786371 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1781959 1781981 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.1"; Scaffold004 rebuild exon 1782086 1782157 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.1"; Scaffold004 rebuild exon 1785156 1785408 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.1"; Scaffold004 rebuild exon 1785820 1785956 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.1"; Scaffold004 rebuild exon 1786263 1786371 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.1"; Scaffold004 rebuild transcript 1785553 1785960 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1785553 1785960 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.2"; Scaffold004 rebuild transcript 1784968 1785960 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1784968 1784969 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.3"; Scaffold004 rebuild exon 1785156 1785408 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.3"; Scaffold004 rebuild exon 1785820 1785960 . + . gene_id "RvY_08929"; transcript_id "RvY_08929.3"; Scaffold004 rebuild transcript 1785733 1786645 . - . gene_id "RvY_08930"; transcript_id "RvY_08930.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1785733 1785908 . - . gene_id "RvY_08930"; transcript_id "RvY_08930.1"; Scaffold004 rebuild exon 1786495 1786645 . - . gene_id "RvY_08930"; transcript_id "RvY_08930.1"; Scaffold004 rebuild transcript 1787046 1788484 . + . gene_id "RvY_08931"; transcript_id "RvY_08931.1"; gene_name "HES1"; annotation "putative Transcription factor HES-1-A"; Pfam "[Hairy_orange] Hairy Orange|[HLH] Helix-loop-helix DNA-binding domain"; KO "K06054"; similar_genes "HES1A_XENLA(e-value:1.1e-39;bit-score:161.0)"; Scaffold004 rebuild exon 1787046 1787093 . + . gene_id "RvY_08931"; transcript_id "RvY_08931.1"; Scaffold004 rebuild exon 1787212 1787307 . + . gene_id "RvY_08931"; transcript_id "RvY_08931.1"; Scaffold004 rebuild exon 1787882 1788484 . + . gene_id "RvY_08931"; transcript_id "RvY_08931.1"; Scaffold004 rebuild transcript 1791763 1792384 . + . gene_id "RvY_08932"; transcript_id "RvY_08932.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1791763 1792196 . + . gene_id "RvY_08932"; transcript_id "RvY_08932.1"; Scaffold004 rebuild exon 1792303 1792384 . + . gene_id "RvY_08932"; transcript_id "RvY_08932.1"; Scaffold004 rebuild transcript 1792731 1795023 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; gene_name "COG4642"; annotation "hypothetical protein."; Pfam "[MORN] MORN repeat"; CDD "Uncharacterized protein conserved in bacteria [Function unknown]"; Scaffold004 rebuild exon 1792731 1792775 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1792882 1793101 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1793256 1793404 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1793561 1793638 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1793729 1793800 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1793857 1794007 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1794095 1794202 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild exon 1794977 1795023 . + . gene_id "RvY_08933"; transcript_id "RvY_08933.1"; Scaffold004 rebuild transcript 1798196 1798975 . - . gene_id "RvY_08934"; transcript_id "RvY_08934.1"; annotation "hypothetical protein."; Pfam "[Hairy_orange] Hairy Orange|[HLH] Helix-loop-helix DNA-binding domain"; Scaffold004 rebuild exon 1798196 1798735 . - . gene_id "RvY_08934"; transcript_id "RvY_08934.1"; Scaffold004 rebuild exon 1798928 1798975 . - . gene_id "RvY_08934"; transcript_id "RvY_08934.1"; Scaffold004 rebuild transcript 1798141 1798455 . - . gene_id "RvY_08934"; transcript_id "RvY_08934.2"; annotation "hypothetical protein."; Pfam "[Hairy_orange] Hairy Orange|[HLH] Helix-loop-helix DNA-binding domain"; Scaffold004 rebuild exon 1798141 1798455 . - . gene_id "RvY_08934"; transcript_id "RvY_08934.2"; Scaffold004 rebuild transcript 1802547 1807486 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; annotation "hypothetical protein."; Pfam "[Dynamin_N] Dynamin family"; Scaffold004 rebuild exon 1802547 1802656 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1802780 1802890 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1802973 1803066 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1803591 1803934 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1804125 1804233 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1804344 1804499 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1804583 1804652 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1804734 1804826 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1804892 1804968 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1805051 1805115 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1805192 1805307 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1805379 1805451 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1805524 1805596 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1805675 1805805 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1805872 1805968 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1806043 1806180 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1806246 1806434 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1806497 1806583 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1806670 1806777 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1806848 1806901 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1807011 1807229 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild exon 1807286 1807486 . - . gene_id "RvY_08935"; transcript_id "RvY_08935.1"; Scaffold004 rebuild transcript 1808057 1812186 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; gene_name "KAP95"; annotation "putative Importin subunit beta-1"; Pfam "[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat|[IBN_N] Importin-beta N-terminal domain|[HEAT] HEAT repeat"; CDD "Karyopherin (importin) beta [Intracellular trafficking and secretion]"; KO "K14293"; similar_genes "IMB1_RAT(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 1808057 1808096 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1808190 1808248 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1808339 1808521 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1808583 1808786 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1808859 1808935 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1809013 1809088 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1809178 1809237 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1809303 1809392 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1809482 1809592 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1809654 1809927 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1809990 1810234 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1810347 1810480 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1810572 1810647 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1810719 1811010 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1811081 1811163 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1811252 1811359 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1811431 1811568 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1811641 1811728 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1811795 1811915 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild exon 1812000 1812186 . + . gene_id "RvY_08936"; transcript_id "RvY_08936.1"; Scaffold004 rebuild transcript 1812382 1813901 . - . gene_id "RvY_08937"; transcript_id "RvY_08937.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1812382 1812891 . - . gene_id "RvY_08937"; transcript_id "RvY_08937.1"; Scaffold004 rebuild exon 1812963 1813901 . - . gene_id "RvY_08937"; transcript_id "RvY_08937.1"; Scaffold004 rebuild transcript 1815926 1817588 . + . gene_id "RvY_08938"; transcript_id "RvY_08938.1"; annotation "hypothetical protein."; Pfam "[Torsin]"; similar_genes "TOR1A_MOUSE(e-value:3.0e-25;bit-score:113.0)"; Scaffold004 rebuild exon 1815926 1816138 . + . gene_id "RvY_08938"; transcript_id "RvY_08938.1"; Scaffold004 rebuild exon 1816203 1816840 . + . gene_id "RvY_08938"; transcript_id "RvY_08938.1"; Scaffold004 rebuild exon 1817030 1817588 . + . gene_id "RvY_08938"; transcript_id "RvY_08938.1"; Scaffold004 rebuild transcript 1817823 1818759 . - . gene_id "RvY_08939"; transcript_id "RvY_08939.1"; gene_name "gatC"; annotation "hypothetical protein."; Pfam "[Glu-tRNAGln] Glu-tRNAGln amidotransferase C subunit"; CDD "aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed"; Scaffold004 rebuild exon 1817823 1817947 . - . gene_id "RvY_08939"; transcript_id "RvY_08939.1"; Scaffold004 rebuild exon 1818025 1818128 . - . gene_id "RvY_08939"; transcript_id "RvY_08939.1"; Scaffold004 rebuild exon 1818187 1818353 . - . gene_id "RvY_08939"; transcript_id "RvY_08939.1"; Scaffold004 rebuild exon 1818433 1818519 . - . gene_id "RvY_08939"; transcript_id "RvY_08939.1"; Scaffold004 rebuild exon 1818673 1818759 . - . gene_id "RvY_08939"; transcript_id "RvY_08939.1"; Scaffold004 rebuild transcript 1819597 1820358 . + . gene_id "RvY_08940"; transcript_id "RvY_08940.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1819597 1819742 . + . gene_id "RvY_08940"; transcript_id "RvY_08940.1"; Scaffold004 rebuild exon 1819810 1819856 . + . gene_id "RvY_08940"; transcript_id "RvY_08940.1"; Scaffold004 rebuild exon 1819963 1820081 . + . gene_id "RvY_08940"; transcript_id "RvY_08940.1"; Scaffold004 rebuild exon 1820260 1820358 . + . gene_id "RvY_08940"; transcript_id "RvY_08940.1"; Scaffold004 rebuild transcript 1820828 1838977 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; gene_name "HSPG2"; annotation "heparan sulfate proteoglycan 2 (perlecan)"; Pfam "[Laminin_G_2] Laminin G domain|[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[EGF] EGF-like domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_B] Laminin B (Domain IV)|[Laminin_G_1] Laminin G domain|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Laminin G domain."; KO "K06255"; similar_genes "PGBM_HUMAN(e-value:5.8e-24;bit-score:109.0)"; Scaffold004 rebuild exon 1820828 1820991 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1821074 1821258 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1821357 1821588 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1821693 1821827 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1821890 1822064 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1822135 1822601 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1822659 1822748 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1822815 1822876 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1822945 1823104 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1823185 1823754 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1823812 1823970 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1824037 1824084 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1824177 1824512 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1824787 1825035 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1825141 1825857 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1825918 1826115 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1826192 1826756 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1826860 1826999 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1827201 1827703 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1827777 1827907 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1827977 1828329 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1828468 1829149 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1829262 1829417 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1829484 1829858 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1829940 1830181 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1830254 1830386 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1830496 1830524 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1830597 1830929 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1830998 1831090 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1831167 1831412 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1831494 1831811 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1831894 1832199 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1832265 1832337 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1832398 1832612 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1832684 1832992 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1833067 1833342 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1833414 1833726 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1833796 1833869 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1833950 1834240 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1834314 1834391 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1834470 1834676 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1834753 1835022 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1835088 1835111 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1835187 1835248 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1835341 1835389 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1835455 1835612 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1835674 1835842 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1835916 1836165 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild exon 1838897 1838977 . - . gene_id "RvY_08941"; transcript_id "RvY_08941.1"; Scaffold004 rebuild transcript 1840453 1842162 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; gene_name "truA"; annotation "hypothetical protein."; Pfam "[PseudoU_synth_1] tRNA pseudouridine synthase"; CDD "tRNA pseudouridine synthase A; Validated"; Scaffold004 rebuild exon 1840453 1840511 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1840590 1840664 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1840756 1840924 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1840985 1841225 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1841290 1841481 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1841603 1841796 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1841929 1841998 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild exon 1842116 1842162 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.1"; Scaffold004 rebuild transcript 1840721 1842162 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; gene_name "truA"; annotation "hypothetical protein."; Pfam "[PseudoU_synth_1] tRNA pseudouridine synthase"; CDD "tRNA pseudouridine synthase A; Validated"; Scaffold004 rebuild exon 1840721 1840924 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; Scaffold004 rebuild exon 1840985 1841225 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; Scaffold004 rebuild exon 1841290 1841481 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; Scaffold004 rebuild exon 1841603 1841796 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; Scaffold004 rebuild exon 1841929 1841998 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; Scaffold004 rebuild exon 1842116 1842162 . - . gene_id "RvY_08942"; transcript_id "RvY_08942.2"; Scaffold004 rebuild transcript 1842882 1844001 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.1"; annotation "(1)putative Protein RER1 homolog(2)hypothetical protein."; Pfam "[Rer1] Rer1 family"; similar_genes "(1)RER1_CAEEL(e-value:2.4e-48;bit-score:190.0)"; Scaffold004 rebuild exon 1842882 1842911 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.1"; Scaffold004 rebuild exon 1842985 1843089 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.1"; Scaffold004 rebuild exon 1843326 1843431 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.1"; Scaffold004 rebuild exon 1843576 1843787 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.1"; Scaffold004 rebuild exon 1843852 1844001 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.1"; Scaffold004 rebuild transcript 1843901 1844326 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.2"; annotation "(1)putative Protein RER1 homolog(2)hypothetical protein."; Pfam "[Rer1] Rer1 family"; similar_genes "(1)RER1_CAEEL(e-value:2.4e-48;bit-score:190.0)"; Scaffold004 rebuild exon 1843901 1844326 . + . gene_id "RvY_08943"; transcript_id "RvY_08943.2"; Scaffold004 rebuild transcript 1844982 1847379 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; annotation "putative Transmembrane protein C2orf18 homolog"; Pfam "[Nuc_sug_transp] Nucleotide-sugar transporter|[DUF914] Eukaryotic protein of unknown function (DUF914)|[EamA] EamA-like transporter family"; similar_genes "CB018_RAT(e-value:1.2e-47;bit-score:187.0)"; Scaffold004 rebuild exon 1844982 1845058 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1845125 1845194 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1845346 1845539 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1845606 1845664 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1845743 1845762 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1845849 1845889 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1845956 1845995 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846068 1846169 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846240 1846324 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846391 1846434 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846550 1846624 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846685 1846721 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846788 1846843 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1846927 1846964 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1847046 1847130 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild exon 1847248 1847379 . + . gene_id "RvY_08944"; transcript_id "RvY_08944.1"; Scaffold004 rebuild transcript 1847795 1849341 . - . gene_id "RvY_08945"; transcript_id "RvY_08945.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1847795 1848100 . - . gene_id "RvY_08945"; transcript_id "RvY_08945.1"; Scaffold004 rebuild exon 1848565 1848717 . - . gene_id "RvY_08945"; transcript_id "RvY_08945.1"; Scaffold004 rebuild exon 1848794 1849053 . - . gene_id "RvY_08945"; transcript_id "RvY_08945.1"; Scaffold004 rebuild exon 1849143 1849341 . - . gene_id "RvY_08945"; transcript_id "RvY_08945.1"; Scaffold004 rebuild transcript 1851182 1852479 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; annotation "putative NECAP-like protein CG9132"; Pfam "[DUF1681]"; similar_genes "NECAP_DROME(e-value:1.4e-50;bit-score:197.0)"; Scaffold004 rebuild exon 1851182 1851267 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild exon 1851346 1851446 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild exon 1851505 1851609 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild exon 1851721 1851802 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild exon 1851875 1851983 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild exon 1852071 1852360 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild exon 1852428 1852479 . + . gene_id "RvY_08946"; transcript_id "RvY_08946.1"; Scaffold004 rebuild transcript 1852982 1854331 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; gene_name "UBE2J2"; annotation "putative Ubiquitin-conjugating enzyme E2 6"; CDD "Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the Scaffold004 rebuild exon 1852982 1853215 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1853296 1853385 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1853473 1853511 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1853592 1853650 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1853726 1853757 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1853843 1853895 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1853974 1854006 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1854076 1854109 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1854226 1854266 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild exon 1854329 1854331 . - . gene_id "RvY_08947"; transcript_id "RvY_08947.1"; Scaffold004 rebuild transcript 1856626 1857201 . + . gene_id "RvY_08948"; transcript_id "RvY_08948.1"; gene_name "GNA1"; annotation "glucosamine-phosphate N-acetyltransferase [EC:2.3.1.4]"; CDD "acetyltransferase; Provisional"; EC "EC2.3.1.4"; KO "K00621"; Scaffold004 rebuild exon 1856626 1857201 . + . gene_id "RvY_08948"; transcript_id "RvY_08948.1"; Scaffold004 rebuild transcript 1857529 1858780 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; gene_name "P-ATPase-V"; annotation "hypothetical protein."; CDD "P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in."; EC "EC3.6.3.-"; similar_genes "AT132_HUMAN(e-value:2.9e-06;bit-score:50.0)"; Scaffold004 rebuild exon 1857529 1857747 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild exon 1857823 1857915 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild exon 1857987 1858075 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild exon 1858149 1858206 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild exon 1858288 1858387 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild exon 1858446 1858669 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild exon 1858730 1858780 . - . gene_id "RvY_08949"; transcript_id "RvY_08949.1"; Scaffold004 rebuild transcript 1859070 1863685 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; gene_name "P-ATPase-V"; annotation "hypothetical protein."; Pfam "[P5-ATPase] P5-type ATPase cation transporter|[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in."; EC "EC3.6.3.-"; KO "K14951"; similar_genes "AT134_CHICK(e-value:3.0e-25;bit-score:113.0)"; Scaffold004 rebuild exon 1859070 1859381 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1859442 1859662 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1859929 1860216 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1860435 1860499 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1860597 1860985 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1861238 1861426 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1861511 1861567 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1861628 1861728 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1861810 1862100 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1862176 1862251 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1862333 1862438 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1862508 1862606 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1862685 1862891 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1862996 1863058 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1863143 1863210 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1863274 1863441 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1863502 1863587 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild exon 1863652 1863685 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.1"; Scaffold004 rebuild transcript 1859044 1863685 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; gene_name "P-ATPase-V"; annotation "hypothetical protein."; Pfam "[P5-ATPase] P5-type ATPase cation transporter|[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in."; EC "EC3.6.3.-"; KO "K14951"; similar_genes "AT134_CHICK(e-value:3.0e-25;bit-score:113.0)"; Scaffold004 rebuild exon 1859044 1859088 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1859160 1859381 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1859442 1859662 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1859929 1860216 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1860435 1860499 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1860597 1860985 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1861238 1861426 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1861511 1861567 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1861628 1861728 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1861810 1862100 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1862176 1862251 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1862333 1862438 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1862508 1862606 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1862685 1862891 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1862996 1863058 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1863143 1863210 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1863274 1863441 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1863502 1863587 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild exon 1863652 1863685 . - . gene_id "RvY_08950"; transcript_id "RvY_08950.2"; Scaffold004 rebuild transcript 1859182 1859796 . + . gene_id "RvY_08951"; transcript_id "RvY_08951.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1859182 1859796 . + . gene_id "RvY_08951"; transcript_id "RvY_08951.1"; Scaffold004 rebuild transcript 1864989 1865986 . - . gene_id "RvY_08952"; transcript_id "RvY_08952.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1864989 1865678 . - . gene_id "RvY_08952"; transcript_id "RvY_08952.1"; Scaffold004 rebuild exon 1865708 1865986 . - . gene_id "RvY_08952"; transcript_id "RvY_08952.1"; Scaffold004 rebuild transcript 1866717 1867707 . + . gene_id "RvY_08953"; transcript_id "RvY_08953.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold004 rebuild exon 1866717 1866972 . + . gene_id "RvY_08953"; transcript_id "RvY_08953.1"; Scaffold004 rebuild exon 1867202 1867540 . + . gene_id "RvY_08953"; transcript_id "RvY_08953.1"; Scaffold004 rebuild exon 1867631 1867707 . + . gene_id "RvY_08953"; transcript_id "RvY_08953.1"; Scaffold004 rebuild transcript 1867791 1867994 . - . gene_id "RvY_08954"; transcript_id "RvY_08954.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1867791 1867994 . - . gene_id "RvY_08954"; transcript_id "RvY_08954.1"; Scaffold004 rebuild transcript 1868029 1868876 . - . gene_id "RvY_08955"; transcript_id "RvY_08955.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1868029 1868105 . - . gene_id "RvY_08955"; transcript_id "RvY_08955.1"; Scaffold004 rebuild exon 1868314 1868670 . - . gene_id "RvY_08955"; transcript_id "RvY_08955.1"; Scaffold004 rebuild exon 1868699 1868876 . - . gene_id "RvY_08955"; transcript_id "RvY_08955.1"; Scaffold004 rebuild transcript 1869444 1870902 . + . gene_id "RvY_08956"; transcript_id "RvY_08956.1"; annotation "hypothetical protein."; Pfam "[DUF3469]"; Scaffold004 rebuild exon 1869444 1869667 . + . gene_id "RvY_08956"; transcript_id "RvY_08956.1"; Scaffold004 rebuild exon 1869805 1870214 . + . gene_id "RvY_08956"; transcript_id "RvY_08956.1"; Scaffold004 rebuild exon 1870441 1870645 . + . gene_id "RvY_08956"; transcript_id "RvY_08956.1"; Scaffold004 rebuild exon 1870764 1870902 . + . gene_id "RvY_08956"; transcript_id "RvY_08956.1"; Scaffold004 rebuild transcript 1872329 1879654 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; gene_name "HepA"; annotation "TATA-binding protein-associated factor 172"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[DUF3535]|[HEAT_2] HEAT repeats|[HEAT] HEAT repeat"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K15192"; similar_genes "BTAF1_HUMAN(e-value:2.7e-83;bit-score:306.0)"; Scaffold004 rebuild exon 1872329 1872339 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1872411 1872534 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1872600 1872714 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1872885 1873016 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1873114 1873399 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1873474 1873600 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1873655 1873699 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1873760 1873873 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1873948 1874223 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1874308 1874805 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1874895 1875078 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1875146 1875426 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1875495 1875667 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1875786 1876074 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1876149 1876367 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1876437 1877288 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1877354 1877494 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1877555 1877694 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1877752 1877974 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1878053 1878211 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1878275 1878478 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1878546 1878829 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1878898 1878975 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1879077 1879298 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild exon 1879369 1879654 . + . gene_id "RvY_08957"; transcript_id "RvY_08957.1"; Scaffold004 rebuild transcript 1880194 1887362 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; gene_name "DIAPH2"; annotation "putative Protein diaphanous"; Pfam "[Drf_FH3] Diaphanous FH3 Domain|[Drf_GBD] Diaphanous GTPase-binding Domain|[FH2] Formin Homology 2 Domain"; CDD "Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain."; KO "K05741"; similar_genes "DIA_DROME(e-value:6.9e-29;bit-score:125.0)"; Scaffold004 rebuild exon 1880194 1880579 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1880885 1880989 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1881082 1881510 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1881741 1881870 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1881953 1882105 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1882165 1882251 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1882330 1882529 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1882596 1882709 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1882794 1882905 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1882972 1883265 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1883337 1883616 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1883678 1883913 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1884812 1884922 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1885057 1885168 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1885242 1885372 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1885436 1885517 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1885572 1885765 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1885832 1885933 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1886651 1886845 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild exon 1887321 1887362 . - . gene_id "RvY_08958"; transcript_id "RvY_08958.1"; Scaffold004 rebuild transcript 1888051 1890726 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; gene_name "ADCK"; annotation "aarF domain-containing kinase"; Pfam "[ABC1] ABC1 family"; CDD "Predicted unusual protein kinase [General function prediction only]"; EC "EC2.7.11.-"; KO "K08869"; similar_genes "ADCK5_MOUSE(e-value:3.2e-18;bit-score:90.0)"; Scaffold004 rebuild exon 1888051 1888415 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild exon 1888478 1888541 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild exon 1888637 1888717 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild exon 1888838 1889083 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild exon 1889311 1889911 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild exon 1889986 1890128 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild exon 1890346 1890726 . + . gene_id "RvY_08959"; transcript_id "RvY_08959.1"; Scaffold004 rebuild transcript 1891196 1896809 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; gene_name "P4Hc"; annotation "putative Procollagen-lysine,2-oxoglutarate 5-dioxygenase"; Pfam "[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor."; EC "EC1.14.11.4"; KO "K13646"; similar_genes "PLOD_CAEEL(e-value:6.1e-47;bit-score:185.0)"; Scaffold004 rebuild exon 1891196 1891351 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1891442 1891570 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1891637 1891783 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1891898 1891992 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1892062 1892140 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1892240 1892353 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1892419 1892554 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1894140 1894223 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1894306 1894347 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1894415 1894516 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1894600 1894718 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1894772 1894897 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1894960 1895061 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1895159 1895256 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1895361 1895424 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1895523 1895561 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1895633 1895706 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1895770 1895818 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1895988 1896102 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1896227 1896360 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1896557 1896651 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild exon 1896737 1896809 . - . gene_id "RvY_08960"; transcript_id "RvY_08960.1"; Scaffold004 rebuild transcript 1896847 1897011 . - . gene_id "RvY_08961"; transcript_id "RvY_08961.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1896847 1897011 . - . gene_id "RvY_08961"; transcript_id "RvY_08961.1"; Scaffold004 rebuild transcript 1899067 1899707 . - . gene_id "RvY_08962"; transcript_id "RvY_08962.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1899067 1899327 . - . gene_id "RvY_08962"; transcript_id "RvY_08962.1"; Scaffold004 rebuild exon 1899390 1899488 . - . gene_id "RvY_08962"; transcript_id "RvY_08962.1"; Scaffold004 rebuild exon 1899567 1899707 . - . gene_id "RvY_08962"; transcript_id "RvY_08962.1"; Scaffold004 rebuild transcript 1900205 1902233 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; gene_name "CASP9"; annotation "caspase 9 [EC:3.4.22.62]"; Pfam "[Peptidase_C14] Caspase domain"; CDD "Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the Scaffold004 rebuild exon 1900205 1900306 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild exon 1900382 1900491 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild exon 1900558 1900815 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild exon 1900890 1901112 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild exon 1901194 1901465 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild exon 1901525 1901702 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild exon 1901769 1902233 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.1"; Scaffold004 rebuild transcript 1900205 1902233 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; gene_name "CASP9"; annotation "caspase 9 [EC:3.4.22.62]"; Pfam "[Peptidase_C14] Caspase domain"; CDD "Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the Scaffold004 rebuild exon 1900205 1900306 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild exon 1900382 1900491 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild exon 1900558 1900815 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild exon 1900890 1901112 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild exon 1901194 1901394 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild exon 1901505 1901702 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild exon 1901769 1902233 . - . gene_id "RvY_08963"; transcript_id "RvY_08963.2"; Scaffold004 rebuild transcript 1905769 1909490 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; gene_name "(1)GNB1"; annotation "(1)Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1(2)hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "(1)K04536"; similar_genes "(1)GBB1_HOMAM(e-value:1.6e-189;bit-score:659.0)"; Scaffold004 rebuild exon 1905769 1905828 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1907998 1908143 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1908281 1908344 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1908427 1908656 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1908720 1908849 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1908936 1909007 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1909078 1909294 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild exon 1909384 1909490 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.1"; Scaffold004 rebuild transcript 1909460 1910077 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.2"; gene_name "(1)GNB1"; annotation "(1)Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1(2)hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "(1)K04536"; similar_genes "(1)GBB1_HOMAM(e-value:1.6e-189;bit-score:659.0)"; Scaffold004 rebuild exon 1909460 1910077 . + . gene_id "RvY_08964"; transcript_id "RvY_08964.2"; Scaffold004 rebuild transcript 1906293 1906484 . - . gene_id "RvY_08965"; transcript_id "RvY_08965.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1906293 1906484 . - . gene_id "RvY_08965"; transcript_id "RvY_08965.1"; Scaffold004 rebuild transcript 1910191 1910592 . + . gene_id "RvY_08966"; transcript_id "RvY_08966.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1910191 1910592 . + . gene_id "RvY_08966"; transcript_id "RvY_08966.1"; Scaffold004 rebuild transcript 1910982 1912135 . - . gene_id "RvY_08967"; transcript_id "RvY_08967.1"; gene_name "RPB3"; annotation "putative DNA-directed RNA polymerase II subunit RPB3"; Pfam "[RNA_pol_L] RNA polymerase Rpb3/Rpb11 dimerisation domain|[RNA_pol_A_bac] RNA polymerase Rpb3/RpoA insert domain"; CDD "RPB3 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB3 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization, and the other is an inserted beta sheet subdomain. The RPB3 subunit heterodimerizes with the RPB11 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association."; KO "K03011"; similar_genes "RPB3_HUMAN(e-value:1.9e-35;bit-score:147.0)"; Scaffold004 rebuild exon 1910982 1911216 . - . gene_id "RvY_08967"; transcript_id "RvY_08967.1"; Scaffold004 rebuild exon 1911326 1911494 . - . gene_id "RvY_08967"; transcript_id "RvY_08967.1"; Scaffold004 rebuild exon 1911569 1911755 . - . gene_id "RvY_08967"; transcript_id "RvY_08967.1"; Scaffold004 rebuild exon 1911820 1911991 . - . gene_id "RvY_08967"; transcript_id "RvY_08967.1"; Scaffold004 rebuild exon 1912050 1912135 . - . gene_id "RvY_08967"; transcript_id "RvY_08967.1"; Scaffold004 rebuild transcript 1912583 1914285 . + . gene_id "RvY_08968"; transcript_id "RvY_08968.1"; gene_name "eIF-2G"; annotation "Eukaryotic translation initiation factor 2 subunit 3, Y-linked"; Pfam "[eIF2_C] Initiation factor eIF2 gamma, C terminal|[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "eukaryotic translation initiation factor 2 gamma subunit; Provisional"; KO "K03242"; similar_genes "IF2H_MOUSE(e-value:7.6e-181;bit-score:630.0)"; Scaffold004 rebuild exon 1912583 1912712 . + . gene_id "RvY_08968"; transcript_id "RvY_08968.1"; Scaffold004 rebuild exon 1912774 1912892 . + . gene_id "RvY_08968"; transcript_id "RvY_08968.1"; Scaffold004 rebuild exon 1913055 1913678 . + . gene_id "RvY_08968"; transcript_id "RvY_08968.1"; Scaffold004 rebuild exon 1913737 1914285 . + . gene_id "RvY_08968"; transcript_id "RvY_08968.1"; Scaffold004 rebuild transcript 1914497 1915444 . - . gene_id "RvY_08969"; transcript_id "RvY_08969.1"; gene_name "NIP7"; annotation "60S ribosome subunit biogenesis protein NIP7 homolog"; CDD "Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and biogenesis]"; KO "K07565"; similar_genes "NIP7_XENLA(e-value:6.1e-66;bit-score:248.0)"; Scaffold004 rebuild exon 1914497 1914616 . - . gene_id "RvY_08969"; transcript_id "RvY_08969.1"; Scaffold004 rebuild exon 1914681 1914821 . - . gene_id "RvY_08969"; transcript_id "RvY_08969.1"; Scaffold004 rebuild exon 1914885 1915023 . - . gene_id "RvY_08969"; transcript_id "RvY_08969.1"; Scaffold004 rebuild exon 1915217 1915303 . - . gene_id "RvY_08969"; transcript_id "RvY_08969.1"; Scaffold004 rebuild exon 1915389 1915444 . - . gene_id "RvY_08969"; transcript_id "RvY_08969.1"; Scaffold004 rebuild transcript 1916119 1918192 . + . gene_id "RvY_08970"; transcript_id "RvY_08970.1"; gene_name "ACATN"; annotation "putative Acetyl-coenzyme A transporter 1"; Pfam "[Acatn] Acetyl-coenzyme A transporter 1"; CDD "AmpG-related permease."; EC "EC2.3.1.-"; KO "K03372"; similar_genes "ACATN_RAT(e-value:5.4e-33;bit-score:139.0)"; Scaffold004 rebuild exon 1916119 1917126 . + . gene_id "RvY_08970"; transcript_id "RvY_08970.1"; Scaffold004 rebuild exon 1917201 1917385 . + . gene_id "RvY_08970"; transcript_id "RvY_08970.1"; Scaffold004 rebuild exon 1917526 1917646 . + . gene_id "RvY_08970"; transcript_id "RvY_08970.1"; Scaffold004 rebuild exon 1917732 1917953 . + . gene_id "RvY_08970"; transcript_id "RvY_08970.1"; Scaffold004 rebuild exon 1918031 1918192 . + . gene_id "RvY_08970"; transcript_id "RvY_08970.1"; Scaffold004 rebuild transcript 1919406 1919732 . - . gene_id "RvY_08971"; transcript_id "RvY_08971.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1919406 1919732 . - . gene_id "RvY_08971"; transcript_id "RvY_08971.1"; Scaffold004 rebuild transcript 1921550 1924901 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain"; Scaffold004 rebuild exon 1921550 1921898 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1921977 1922171 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1922443 1922522 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1922592 1923222 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1923299 1924276 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1924364 1924441 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1924546 1924737 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild exon 1924807 1924901 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.1"; Scaffold004 rebuild transcript 1920791 1923281 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain"; Scaffold004 rebuild exon 1920791 1920917 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; Scaffold004 rebuild exon 1921074 1921256 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; Scaffold004 rebuild exon 1921536 1921898 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; Scaffold004 rebuild exon 1921977 1922171 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; Scaffold004 rebuild exon 1922443 1922522 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; Scaffold004 rebuild exon 1922592 1923281 . + . gene_id "RvY_08972"; transcript_id "RvY_08972.2"; Scaffold004 rebuild transcript 1925175 1925803 . - . gene_id "RvY_08973"; transcript_id "RvY_08973.1"; gene_name "zf-MIZ"; annotation "hypothetical protein."; Pfam "[zf-MIZ] MIZ/SP-RING zinc finger"; CDD "MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation."; Scaffold004 rebuild exon 1925175 1925206 . - . gene_id "RvY_08973"; transcript_id "RvY_08973.1"; Scaffold004 rebuild exon 1925292 1925392 . - . gene_id "RvY_08973"; transcript_id "RvY_08973.1"; Scaffold004 rebuild exon 1925472 1925712 . - . gene_id "RvY_08973"; transcript_id "RvY_08973.1"; Scaffold004 rebuild exon 1925785 1925803 . - . gene_id "RvY_08973"; transcript_id "RvY_08973.1"; Scaffold004 rebuild transcript 1925924 1926939 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1925924 1926106 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.1"; Scaffold004 rebuild exon 1926165 1926349 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.1"; Scaffold004 rebuild exon 1926435 1926753 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.1"; Scaffold004 rebuild exon 1926833 1926860 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.1"; Scaffold004 rebuild exon 1926923 1926939 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.1"; Scaffold004 rebuild transcript 1926638 1927499 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1926638 1926860 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.2"; Scaffold004 rebuild exon 1926923 1926982 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.2"; Scaffold004 rebuild exon 1927056 1927330 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.2"; Scaffold004 rebuild exon 1927413 1927499 . - . gene_id "RvY_08974"; transcript_id "RvY_08974.2"; Scaffold004 rebuild transcript 1928274 1932633 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; annotation "Coatomer subunit beta'"; Pfam "[WD40] WD domain, G-beta repeat|[Coatomer_WDAD] Coatomer WD associated region"; similar_genes "COPB2_BOVIN(e-value:1.7e-248;bit-score:855.0)"; Scaffold004 rebuild exon 1928274 1928276 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1928361 1928498 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1928571 1928784 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1928863 1929011 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1929069 1929215 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1929284 1929383 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1929449 1929791 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1929894 1930093 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1930167 1930273 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1930395 1930669 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1930742 1930949 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1931040 1931150 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1931317 1931531 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1931599 1931872 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1932197 1932529 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild exon 1932601 1932633 . + . gene_id "RvY_08975"; transcript_id "RvY_08975.1"; Scaffold004 rebuild transcript 1932859 1934310 . - . gene_id "RvY_08976"; transcript_id "RvY_08976.1"; gene_name "FH"; annotation "hypothetical protein."; Pfam "[Fork_head] Fork head domain"; CDD "FORKHEAD. FORKHEAD, also known as a ""winged helix"""; similar_genes "FOXL2_RABIT(e-value:2.2e-19;bit-score:93.0)"; Scaffold004 rebuild exon 1932859 1933086 . - . gene_id "RvY_08976"; transcript_id "RvY_08976.1"; Scaffold004 rebuild exon 1933303 1933598 . - . gene_id "RvY_08976"; transcript_id "RvY_08976.1"; Scaffold004 rebuild exon 1933734 1934310 . - . gene_id "RvY_08976"; transcript_id "RvY_08976.1"; Scaffold004 rebuild transcript 1935580 1937016 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; gene_name "tpt"; annotation "putative Solute carrier family 35 member E2"; Pfam "[UAA] UAA transporter family|[TPT] Triose-phosphate Transporter family|[EamA] EamA-like transporter family"; CDD "Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap."; KO "K15284"; similar_genes "S35E2_HUMAN(e-value:3.2e-35;bit-score:146.0)"; Scaffold004 rebuild exon 1935580 1935808 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; Scaffold004 rebuild exon 1935885 1935911 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; Scaffold004 rebuild exon 1935968 1936079 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; Scaffold004 rebuild exon 1936169 1936417 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; Scaffold004 rebuild exon 1936499 1936552 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; Scaffold004 rebuild exon 1936647 1937016 . + . gene_id "RvY_08977"; transcript_id "RvY_08977.1"; Scaffold004 rebuild transcript 1937123 1941001 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; gene_name "USP5_13"; annotation "Ubiquitin carboxyl-terminal hydrolase 5"; Pfam "[zf-UBP] Zn-finger in ubiquitin-hydrolases and other protein|[UBA] UBA/TS-N domain|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "Isopeptidase T [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11836"; similar_genes "UBP5_HUMAN(e-value:3.9e-78;bit-score:289.0)"; Scaffold004 rebuild exon 1937123 1937301 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1937364 1937499 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1937599 1937732 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1937793 1937927 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1937990 1938109 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1938181 1938269 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1938365 1938699 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1938790 1938918 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1939025 1939103 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1939167 1939241 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1939335 1939528 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1939612 1939706 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1939789 1940024 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1940122 1940216 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1940311 1940429 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1940524 1940581 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1940678 1940803 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild exon 1940870 1941001 . - . gene_id "RvY_08978"; transcript_id "RvY_08978.1"; Scaffold004 rebuild transcript 1941710 1941958 . + . gene_id "RvY_08979"; transcript_id "RvY_08979.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1941710 1941958 . + . gene_id "RvY_08979"; transcript_id "RvY_08979.1"; Scaffold004 rebuild transcript 1941968 1942512 . + . gene_id "RvY_08980"; transcript_id "RvY_08980.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold004 rebuild exon 1941968 1942252 . + . gene_id "RvY_08980"; transcript_id "RvY_08980.1"; Scaffold004 rebuild exon 1942324 1942512 . + . gene_id "RvY_08980"; transcript_id "RvY_08980.1"; Scaffold004 rebuild transcript 1942666 1943016 . + . gene_id "RvY_08981"; transcript_id "RvY_08981.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold004 rebuild exon 1942666 1943016 . + . gene_id "RvY_08981"; transcript_id "RvY_08981.1"; Scaffold004 rebuild transcript 1943177 1944116 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1943177 1943369 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.1"; Scaffold004 rebuild exon 1943511 1943769 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.1"; Scaffold004 rebuild exon 1943891 1944116 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.1"; Scaffold004 rebuild transcript 1943510 1944116 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1943510 1943769 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.2"; Scaffold004 rebuild exon 1943891 1944116 . - . gene_id "RvY_08982"; transcript_id "RvY_08982.2"; Scaffold004 rebuild transcript 1946727 1949331 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; gene_name "(2)CYCc"; annotation "(1)hypothetical protein.(2)Soluble guanylate cyclase 88E"; Pfam "[HNOBA] Heme NO binding associated|(1)[HNOB] Heme NO binding|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY8E_DROME(e-value:4.3e-20;bit-score:96.0)(2)GCY8E_DROME(e-value:8.9e-61;bit-score:231.0)"; Scaffold004 rebuild exon 1946727 1947040 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1947101 1947207 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1947348 1947475 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1947607 1947721 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1947880 1947913 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1947994 1948019 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1948109 1948134 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1948205 1948262 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1948337 1948429 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1948628 1948760 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1948830 1948883 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1948980 1949182 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild exon 1949270 1949331 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.1"; Scaffold004 rebuild transcript 1948711 1950416 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; gene_name "(2)CYCc"; annotation "(1)hypothetical protein.(2)Soluble guanylate cyclase 88E"; Pfam "[HNOBA] Heme NO binding associated|(1)[HNOB] Heme NO binding|(2)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(2)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GCY8E_DROME(e-value:4.3e-20;bit-score:96.0)(2)GCY8E_DROME(e-value:8.9e-61;bit-score:231.0)"; Scaffold004 rebuild exon 1948711 1948760 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1948830 1948883 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1948980 1949025 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1949105 1949182 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1949270 1949515 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1949609 1949765 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1949834 1949860 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1949935 1949967 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1950037 1950086 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1950203 1950292 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild exon 1950369 1950416 . + . gene_id "RvY_08983"; transcript_id "RvY_08983.2"; Scaffold004 rebuild transcript 1951000 1954099 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; gene_name "(2)PRK08853"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(2)DNA polymerase III subunits gamma and tau; Validated"; Scaffold004 rebuild exon 1951000 1951057 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1951131 1951184 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1951254 1951336 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1951431 1951493 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1951607 1951655 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1951735 1952244 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1952319 1952708 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1952777 1953265 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild exon 1953327 1954099 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.1"; Scaffold004 rebuild transcript 1951767 1953399 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.2"; gene_name "(2)PRK08853"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "(2)DNA polymerase III subunits gamma and tau; Validated"; Scaffold004 rebuild exon 1951767 1952244 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.2"; Scaffold004 rebuild exon 1952319 1952708 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.2"; Scaffold004 rebuild exon 1952777 1953399 . + . gene_id "RvY_08984"; transcript_id "RvY_08984.2"; Scaffold004 rebuild transcript 1955292 1958048 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold004 rebuild exon 1955292 1955364 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1955452 1955542 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1955605 1955655 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1955731 1955804 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1955904 1956130 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1956188 1957211 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1957289 1957381 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1957452 1957572 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1957640 1957667 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1957736 1957854 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1957914 1957954 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild exon 1958023 1958048 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.1"; Scaffold004 rebuild transcript 1955292 1957273 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold004 rebuild exon 1955292 1955364 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; Scaffold004 rebuild exon 1955452 1955542 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; Scaffold004 rebuild exon 1955605 1955655 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; Scaffold004 rebuild exon 1955731 1955804 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; Scaffold004 rebuild exon 1955904 1956130 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; Scaffold004 rebuild exon 1956188 1957273 . + . gene_id "RvY_08985"; transcript_id "RvY_08985.2"; Scaffold004 rebuild transcript 1955608 1955940 . - . gene_id "RvY_08986"; transcript_id "RvY_08986.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1955608 1955940 . - . gene_id "RvY_08986"; transcript_id "RvY_08986.1"; Scaffold004 rebuild transcript 1959040 1959777 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.1"; annotation "hypothetical protein."; Pfam "[SUZ]"; Scaffold004 rebuild exon 1959040 1959103 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.1"; Scaffold004 rebuild exon 1959166 1959366 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.1"; Scaffold004 rebuild exon 1959510 1959610 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.1"; Scaffold004 rebuild exon 1959685 1959777 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.1"; Scaffold004 rebuild transcript 1959162 1959777 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.2"; annotation "hypothetical protein."; Pfam "[SUZ]"; Scaffold004 rebuild exon 1959162 1959366 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.2"; Scaffold004 rebuild exon 1959510 1959610 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.2"; Scaffold004 rebuild exon 1959685 1959777 . - . gene_id "RvY_08987"; transcript_id "RvY_08987.2"; Scaffold004 rebuild transcript 1960403 1961282 . - . gene_id "RvY_08988"; transcript_id "RvY_08988.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1960403 1960890 . - . gene_id "RvY_08988"; transcript_id "RvY_08988.1"; Scaffold004 rebuild exon 1960978 1961196 . - . gene_id "RvY_08988"; transcript_id "RvY_08988.1"; Scaffold004 rebuild exon 1961252 1961282 . - . gene_id "RvY_08988"; transcript_id "RvY_08988.1"; Scaffold004 rebuild transcript 1961260 1961559 . + . gene_id "RvY_08989"; transcript_id "RvY_08989.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1961260 1961356 . + . gene_id "RvY_08989"; transcript_id "RvY_08989.1"; Scaffold004 rebuild exon 1961459 1961559 . + . gene_id "RvY_08989"; transcript_id "RvY_08989.1"; Scaffold004 rebuild transcript 1962540 1965398 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "(1)WDR24_DANRE(e-value:2.4e-16;bit-score:83.0)(2)WDR24_DANRE(e-value:2.4e-14;bit-score:77.0)"; Scaffold004 rebuild exon 1962540 1962868 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1962937 1963392 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1963470 1963634 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1963706 1963928 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1964002 1964523 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1964591 1965141 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1965207 1965253 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild exon 1965334 1965398 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.1"; Scaffold004 rebuild transcript 1962208 1965398 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "(1)WDR24_DANRE(e-value:2.4e-16;bit-score:83.0)(2)WDR24_DANRE(e-value:2.4e-14;bit-score:77.0)"; Scaffold004 rebuild exon 1962208 1962218 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1962554 1962868 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1962937 1963392 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1963470 1963634 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1963706 1963928 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1964002 1964523 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1964591 1965141 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1965207 1965253 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild exon 1965334 1965398 . - . gene_id "RvY_08990"; transcript_id "RvY_08990.2"; Scaffold004 rebuild transcript 1965999 1967928 . + . gene_id "RvY_08991"; transcript_id "RvY_08991.1"; gene_name "NEIL1"; annotation "endonuclease VIII-like 1 [EC:3.2.2.- 4.2.99.18]"; Pfam "[H2TH] Formamidopyrimidine-DNA glycosylase H2TH domain|[Neil1-DNA_bind] Endonuclease VIII-like 1, DNA bind|[Fapy_DNA_glyco] Formamidopyrimidine-DNA glycosylase N-terminal domain"; CDD "Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]"; EC "EC3.2.2.-|EC4.2.99.18"; KO "K10567"; similar_genes "NEIL1_HUMAN(e-value:4.7e-13;bit-score:72.0)"; Scaffold004 rebuild exon 1965999 1966089 . + . gene_id "RvY_08991"; transcript_id "RvY_08991.1"; Scaffold004 rebuild exon 1966254 1966479 . + . gene_id "RvY_08991"; transcript_id "RvY_08991.1"; Scaffold004 rebuild exon 1966578 1966707 . + . gene_id "RvY_08991"; transcript_id "RvY_08991.1"; Scaffold004 rebuild exon 1966768 1967125 . + . gene_id "RvY_08991"; transcript_id "RvY_08991.1"; Scaffold004 rebuild exon 1967225 1967928 . + . gene_id "RvY_08991"; transcript_id "RvY_08991.1"; Scaffold004 rebuild transcript 1968376 1969155 . + . gene_id "RvY_08992"; transcript_id "RvY_08992.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat"; similar_genes "TTC36_NEMVE(e-value:5.9e-09;bit-score:59.0)"; Scaffold004 rebuild exon 1968376 1968490 . + . gene_id "RvY_08992"; transcript_id "RvY_08992.1"; Scaffold004 rebuild exon 1968568 1968765 . + . gene_id "RvY_08992"; transcript_id "RvY_08992.1"; Scaffold004 rebuild exon 1968887 1969155 . + . gene_id "RvY_08992"; transcript_id "RvY_08992.1"; Scaffold004 rebuild transcript 1969477 1971250 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; gene_name "CIDE_N"; annotation "hypothetical protein."; Pfam "[CIDE-N]"; CDD "CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein."; Scaffold004 rebuild exon 1969477 1969650 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; Scaffold004 rebuild exon 1969716 1969864 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; Scaffold004 rebuild exon 1969965 1970105 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; Scaffold004 rebuild exon 1970194 1970271 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; Scaffold004 rebuild exon 1970748 1970947 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; Scaffold004 rebuild exon 1971240 1971250 . - . gene_id "RvY_08993"; transcript_id "RvY_08993.1"; Scaffold004 rebuild transcript 1971291 1973297 . - . gene_id "RvY_08994"; transcript_id "RvY_08994.1"; annotation "hypothetical protein."; Pfam "[G-patch]"; Scaffold004 rebuild exon 1971291 1971574 . - . gene_id "RvY_08994"; transcript_id "RvY_08994.1"; Scaffold004 rebuild exon 1971644 1971949 . - . gene_id "RvY_08994"; transcript_id "RvY_08994.1"; Scaffold004 rebuild exon 1972019 1972118 . - . gene_id "RvY_08994"; transcript_id "RvY_08994.1"; Scaffold004 rebuild exon 1972410 1973297 . - . gene_id "RvY_08994"; transcript_id "RvY_08994.1"; Scaffold004 rebuild transcript 1974460 1976978 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; annotation "putative Acetylcholine receptor subunit beta-type unc-29"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "ACH2_CAEEL(e-value:9.6e-37;bit-score:151.0)"; Scaffold004 rebuild exon 1974460 1974595 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1975010 1975143 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1975234 1975278 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1975348 1975448 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1975631 1975677 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1976084 1976175 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1976250 1976361 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1976461 1976618 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1976689 1976720 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1976779 1976810 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild exon 1976902 1976978 . + . gene_id "RvY_08995"; transcript_id "RvY_08995.1"; Scaffold004 rebuild transcript 1977211 1977825 . + . gene_id "RvY_08996"; transcript_id "RvY_08996.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region"; Scaffold004 rebuild exon 1977211 1977825 . + . gene_id "RvY_08996"; transcript_id "RvY_08996.1"; Scaffold004 rebuild transcript 1978998 1979314 . - . gene_id "RvY_08997"; transcript_id "RvY_08997.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1978998 1979077 . - . gene_id "RvY_08997"; transcript_id "RvY_08997.1"; Scaffold004 rebuild exon 1979134 1979314 . - . gene_id "RvY_08997"; transcript_id "RvY_08997.1"; Scaffold004 rebuild transcript 1979360 1981557 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; annotation "putative Acetylcholine receptor subunit alpha-like 1"; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "ACH1_DROME(e-value:1.3e-40;bit-score:164.0)"; Scaffold004 rebuild exon 1979360 1979435 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1980827 1980879 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1980939 1980986 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1981067 1981093 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1981174 1981215 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1981275 1981358 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1981440 1981471 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild exon 1981545 1981557 . + . gene_id "RvY_08998"; transcript_id "RvY_08998.1"; Scaffold004 rebuild transcript 1981680 1982935 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; gene_name "(2)LIC"; annotation "(1)putative Acetylcholine receptor subunit alpha-like(2)Acetylcholine receptor subunit alpha-like"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "(2)Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "(1)ACH1_MANSE(e-value:1.5e-45;bit-score:180.0)(2)ACH1_MANSE(e-value:3.0e-59;bit-score:226.0)"; Scaffold004 rebuild exon 1981680 1981787 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild exon 1981913 1982101 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild exon 1982172 1982246 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild exon 1982307 1982355 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild exon 1982441 1982641 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild exon 1982714 1982737 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild exon 1982817 1982935 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.1"; Scaffold004 rebuild transcript 1981922 1982935 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; gene_name "(2)LIC"; annotation "(1)putative Acetylcholine receptor subunit alpha-like(2)Acetylcholine receptor subunit alpha-like"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "(2)Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "(1)ACH1_MANSE(e-value:1.5e-45;bit-score:180.0)(2)ACH1_MANSE(e-value:3.0e-59;bit-score:226.0)"; Scaffold004 rebuild exon 1981922 1982101 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; Scaffold004 rebuild exon 1982172 1982246 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; Scaffold004 rebuild exon 1982307 1982355 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; Scaffold004 rebuild exon 1982441 1982520 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; Scaffold004 rebuild exon 1982582 1982641 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; Scaffold004 rebuild exon 1982714 1982935 . + . gene_id "RvY_08999"; transcript_id "RvY_08999.2"; Scaffold004 rebuild transcript 1983053 1984151 . + . gene_id "RvY_09000"; transcript_id "RvY_09000.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region"; similar_genes "ACH1_MANSE(e-value:6.3e-17;bit-score:85.0)"; Scaffold004 rebuild exon 1983053 1983063 . + . gene_id "RvY_09000"; transcript_id "RvY_09000.1"; Scaffold004 rebuild exon 1983129 1983571 . + . gene_id "RvY_09000"; transcript_id "RvY_09000.1"; Scaffold004 rebuild exon 1984036 1984151 . + . gene_id "RvY_09000"; transcript_id "RvY_09000.1"; Scaffold004 rebuild transcript 1984413 1986287 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; annotation "Acetylcholine receptor subunit alpha-like 1"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "ACH1_DROME(e-value:2.2e-70;bit-score:263.0)"; Scaffold004 rebuild exon 1984413 1984445 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1984533 1984730 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1984789 1985151 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1985224 1985310 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1985382 1985405 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1985465 1985604 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1985694 1985796 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1985857 1985983 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1986074 1986105 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild exon 1986189 1986287 . - . gene_id "RvY_09001"; transcript_id "RvY_09001.1"; Scaffold004 rebuild transcript 1991634 1995173 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; gene_name "CYP24A"; annotation "cytochrome P450, family 24, subfamily A (25-hydroxyvitamin D3 24-hydroxylase)"; Pfam "[p450] Cytochrome P450"; KO "K07436"; Scaffold004 rebuild exon 1991634 1991810 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1991873 1991983 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1992173 1992372 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1993144 1993337 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1993405 1993730 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1994463 1994705 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1994761 1994964 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild exon 1995045 1995173 . + . gene_id "RvY_09002"; transcript_id "RvY_09002.1"; Scaffold004 rebuild transcript 1994489 1994930 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1994489 1994495 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.1"; Scaffold004 rebuild exon 1994593 1994930 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.1"; Scaffold004 rebuild transcript 1994270 1995134 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 1994270 1994380 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.2"; Scaffold004 rebuild exon 1994446 1994579 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.2"; Scaffold004 rebuild exon 1994973 1995003 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.2"; Scaffold004 rebuild exon 1995072 1995134 . - . gene_id "RvY_09003"; transcript_id "RvY_09003.2"; Scaffold004 rebuild transcript 1995600 1996237 . - . gene_id "RvY_09004"; transcript_id "RvY_09004.1"; annotation "hypothetical protein."; Pfam "[Noggin]"; Scaffold004 rebuild exon 1995600 1995771 . - . gene_id "RvY_09004"; transcript_id "RvY_09004.1"; Scaffold004 rebuild exon 1995858 1996237 . - . gene_id "RvY_09004"; transcript_id "RvY_09004.1"; Scaffold004 rebuild transcript 1997647 2011254 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; annotation "Protein unc-13 homolog B"; Pfam "[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[Membr_traf_MHD] Munc13 (mammalian uncoordinated) homology domain|[DUF1041] Domain of Unknown Function (DUF1041)|[C2]"; KO "K15293"; similar_genes "UN13B_RAT(e-value:3.6e-153;bit-score:538.0)"; Scaffold004 rebuild exon 1997647 1997668 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1997934 1997963 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1998423 1998522 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1998846 1999087 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1999182 1999304 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1999418 1999742 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1999823 1999846 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 1999904 2000035 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2000149 2000427 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2000490 2000883 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2005495 2005535 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2005614 2005803 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2005874 2005945 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2006036 2006255 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2006558 2006745 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2006825 2007006 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2007084 2007253 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2007352 2007467 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2007530 2007693 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2007761 2007914 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2007993 2008061 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2008128 2008486 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2008560 2008645 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2008765 2008891 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2008966 2009062 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2009149 2009820 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2010169 2010583 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2010645 2010804 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild exon 2010870 2011254 . + . gene_id "RvY_09005"; transcript_id "RvY_09005.1"; Scaffold004 rebuild transcript 2012024 2014001 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; gene_name "SH3GLB"; annotation "endophilin-B"; Pfam "(2)[BAR_2] Bin/amphiphysin/Rvs domain for vesicular trafficking|[SH3_2] Variant SH3 domain|[BAR]|[SH3_1] SH3 domain"; CDD "BAR domain."; KO "K11248"; similar_genes "SHLB2_CHICK(e-value:6.0e-11;bit-score:65.0)"; Scaffold004 rebuild exon 2012024 2012129 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2012193 2012344 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2012420 2012564 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2012646 2012738 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2012843 2012878 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2012973 2013013 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2013096 2013344 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2013415 2013620 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2013676 2013802 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild exon 2013891 2014001 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.1"; Scaffold004 rebuild transcript 2012024 2014001 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; gene_name "SH3GLB"; annotation "endophilin-B"; Pfam "(2)[BAR_2] Bin/amphiphysin/Rvs domain for vesicular trafficking|[SH3_2] Variant SH3 domain|[BAR]|[SH3_1] SH3 domain"; CDD "BAR domain."; KO "K11248"; similar_genes "SHLB2_CHICK(e-value:6.0e-11;bit-score:65.0)"; Scaffold004 rebuild exon 2012024 2012129 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2012193 2012344 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2012420 2012564 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2012646 2012738 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2012843 2012878 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2012973 2013013 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2013096 2013188 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2013252 2013344 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2013415 2013620 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2013676 2013802 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild exon 2013891 2014001 . + . gene_id "RvY_09006"; transcript_id "RvY_09006.2"; Scaffold004 rebuild transcript 2014595 2019549 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; annotation "putative Choline transporter-like protein 5-B"; Pfam "[Choline_transpo] Plasma-membrane choline transporter"; KO "K15377"; similar_genes "CTL5B_DANRE(e-value:1.1e-41;bit-score:167.0)"; Scaffold004 rebuild exon 2014595 2014707 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2014768 2014852 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2015341 2015441 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2015543 2015613 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2015691 2015764 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2015832 2015901 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2015983 2016111 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2016197 2016373 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2016440 2016592 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2016664 2016756 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2016824 2016923 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2017008 2017136 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2017199 2017311 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2017374 2017627 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2017690 2017843 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2018056 2018152 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2018247 2018320 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2018381 2018429 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2018514 2018557 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild exon 2019521 2019549 . - . gene_id "RvY_09007"; transcript_id "RvY_09007.1"; Scaffold004 rebuild transcript 2020433 2022832 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; gene_name "ACADM"; annotation "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial"; Pfam "[Acyl-CoA_dh_N] Acyl-CoA dehydrogenase, N-terminal domain|[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_2] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "Medium chain acyl-CoA dehydrogenase (MCAD). MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer."; EC "EC1.3.99.3"; KO "K00249"; similar_genes "ACADM_BOVIN(e-value:4.0e-97;bit-score:352.0)"; Scaffold004 rebuild exon 2020433 2020447 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2020603 2020714 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2020797 2020825 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2020922 2020990 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2021100 2021235 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2021356 2021601 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2021678 2021802 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2021867 2021938 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2022008 2022172 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2022294 2022341 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2022416 2022544 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2022609 2022680 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild exon 2022752 2022832 . + . gene_id "RvY_09008"; transcript_id "RvY_09008.1"; Scaffold004 rebuild transcript 2024020 2025345 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2024020 2024670 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; Scaffold004 rebuild exon 2024744 2024775 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; Scaffold004 rebuild exon 2024855 2024915 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; Scaffold004 rebuild exon 2025019 2025077 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; Scaffold004 rebuild exon 2025144 2025242 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; Scaffold004 rebuild exon 2025315 2025345 . + . gene_id "RvY_09009"; transcript_id "RvY_09009.1"; Scaffold004 rebuild transcript 2025554 2026053 . + . gene_id "RvY_09010"; transcript_id "RvY_09010.1"; gene_name "DSPc"; annotation "hypothetical protein."; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower Scaffold004 rebuild exon 2025554 2025605 . + . gene_id "RvY_09010"; transcript_id "RvY_09010.1"; Scaffold004 rebuild exon 2025791 2026053 . + . gene_id "RvY_09010"; transcript_id "RvY_09010.1"; Scaffold004 rebuild transcript 2027086 2027877 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.1"; annotation "hypothetical protein."; Pfam "[Transmemb_17] Predicted membrane protein"; Scaffold004 rebuild exon 2027086 2027300 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.1"; Scaffold004 rebuild exon 2027400 2027498 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.1"; Scaffold004 rebuild exon 2027574 2027667 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.1"; Scaffold004 rebuild exon 2027738 2027775 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.1"; Scaffold004 rebuild exon 2027850 2027877 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.1"; Scaffold004 rebuild transcript 2027180 2027877 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.2"; annotation "hypothetical protein."; Pfam "[Transmemb_17] Predicted membrane protein"; Scaffold004 rebuild exon 2027180 2027300 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.2"; Scaffold004 rebuild exon 2027366 2027498 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.2"; Scaffold004 rebuild exon 2027574 2027667 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.2"; Scaffold004 rebuild exon 2027738 2027775 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.2"; Scaffold004 rebuild exon 2027850 2027877 . - . gene_id "RvY_09011"; transcript_id "RvY_09011.2"; Scaffold004 rebuild transcript 2028930 2029920 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; gene_name "CP"; annotation "Soma ferritin"; Pfam "[Ferritin] Ferritin-like domain"; EC "EC1.16.3.1"; KO "K00522"; similar_genes "FRIS_LYMST(e-value:8.0e-66;bit-score:248.0)"; Scaffold004 rebuild exon 2028930 2028986 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; Scaffold004 rebuild exon 2029063 2029122 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; Scaffold004 rebuild exon 2029208 2029299 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; Scaffold004 rebuild exon 2029414 2029468 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; Scaffold004 rebuild exon 2029528 2029653 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; Scaffold004 rebuild exon 2029771 2029920 . + . gene_id "RvY_09012"; transcript_id "RvY_09012.1"; Scaffold004 rebuild transcript 2030853 2033058 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; gene_name "APEX1"; annotation "AP endonuclease 1 [EC:4.2.99.18]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC4.2.99.18"; KO "K10771"; Scaffold004 rebuild exon 2030853 2030907 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2030988 2031053 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2031134 2031455 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2031561 2031638 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2031724 2031928 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2032011 2032157 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2032241 2032457 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2032541 2032815 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild exon 2032879 2033058 . - . gene_id "RvY_09013"; transcript_id "RvY_09013.1"; Scaffold004 rebuild transcript 2030957 2031130 . + . gene_id "RvY_09014"; transcript_id "RvY_09014.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2030957 2031130 . + . gene_id "RvY_09014"; transcript_id "RvY_09014.1"; Scaffold004 rebuild transcript 2033845 2035673 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; gene_name "UNG"; annotation "putative Uracil-DNA glycosylase"; Pfam "[UDG] Uracil DNA glycosylase superfamily"; CDD "uracil-DNA glycosylase; Provisional"; EC "EC3.2.2.-|EC3.2.2.27"; KO "K03648"; similar_genes "UNG_SALA4(e-value:5.4e-50;bit-score:195.0)"; Scaffold004 rebuild exon 2033845 2034030 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2034101 2034583 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2034663 2034686 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2034776 2034806 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2034902 2035033 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2035173 2035270 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2035354 2035434 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild exon 2035536 2035673 . + . gene_id "RvY_09015"; transcript_id "RvY_09015.1"; Scaffold004 rebuild transcript 2036052 2037772 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; gene_name "RBM22"; annotation "Pre-mRNA-splicing factor RBM22"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold004 rebuild exon 2036052 2036085 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild exon 2036176 2036411 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild exon 2036486 2036609 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild exon 2036706 2037082 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild exon 2037165 2037265 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild exon 2037387 2037619 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild exon 2037735 2037772 . - . gene_id "RvY_09016"; transcript_id "RvY_09016.1"; Scaffold004 rebuild transcript 2038270 2039305 . + . gene_id "RvY_09017"; transcript_id "RvY_09017.1"; gene_name "NOLA1"; annotation "H/ACA ribonucleoprotein complex subunit 1"; Pfam "[Gar1] Gar1/Naf1 RNA binding region"; KO "K11128"; similar_genes "GAR1_DROME(e-value:1.5e-24;bit-score:111.0)"; Scaffold004 rebuild exon 2038270 2038420 . + . gene_id "RvY_09017"; transcript_id "RvY_09017.1"; Scaffold004 rebuild exon 2038576 2038724 . + . gene_id "RvY_09017"; transcript_id "RvY_09017.1"; Scaffold004 rebuild exon 2038808 2038867 . + . gene_id "RvY_09017"; transcript_id "RvY_09017.1"; Scaffold004 rebuild exon 2038985 2039305 . + . gene_id "RvY_09017"; transcript_id "RvY_09017.1"; Scaffold004 rebuild transcript 2039785 2040878 . - . gene_id "RvY_09018"; transcript_id "RvY_09018.1"; gene_name "HSD17B10"; annotation "3-hydroxyacyl-CoA dehydrogenase type-2"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Validated"; EC "EC1.1.1.178|EC1.1.1.35"; KO "K08683"; similar_genes "HCD2_DROME(e-value:7.3e-88;bit-score:321.0)"; Scaffold004 rebuild exon 2039785 2039975 . - . gene_id "RvY_09018"; transcript_id "RvY_09018.1"; Scaffold004 rebuild exon 2040031 2040268 . - . gene_id "RvY_09018"; transcript_id "RvY_09018.1"; Scaffold004 rebuild exon 2040374 2040538 . - . gene_id "RvY_09018"; transcript_id "RvY_09018.1"; Scaffold004 rebuild exon 2040610 2040774 . - . gene_id "RvY_09018"; transcript_id "RvY_09018.1"; Scaffold004 rebuild exon 2040861 2040878 . - . gene_id "RvY_09018"; transcript_id "RvY_09018.1"; Scaffold004 rebuild transcript 2045759 2049698 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; gene_name "K01528"; annotation "Dynamin-1"; Pfam "[PH]|[Dynamin_M] Dynamin central region|[Dynamin_N] Dynamin family|[GED] Dynamin GTPase effector domain"; CDD "Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event."; EC "EC3.6.5.5"; KO "K01528"; similar_genes "DYN1_RAT(e-value:3.8e-161;bit-score:564.0)"; Scaffold004 rebuild exon 2045759 2046155 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild exon 2046256 2046459 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild exon 2046702 2046909 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild exon 2047095 2047813 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild exon 2048087 2048484 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild exon 2048707 2049127 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild exon 2049358 2049698 . + . gene_id "RvY_09019"; transcript_id "RvY_09019.1"; Scaffold004 rebuild transcript 2050161 2050517 . - . gene_id "RvY_09020"; transcript_id "RvY_09020.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2050161 2050305 . - . gene_id "RvY_09020"; transcript_id "RvY_09020.1"; Scaffold004 rebuild exon 2050387 2050517 . - . gene_id "RvY_09020"; transcript_id "RvY_09020.1"; Scaffold004 rebuild transcript 2050676 2050858 . + . gene_id "RvY_09021"; transcript_id "RvY_09021.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2050676 2050858 . + . gene_id "RvY_09021"; transcript_id "RvY_09021.1"; Scaffold004 rebuild transcript 2051377 2051716 . + . gene_id "RvY_09022"; transcript_id "RvY_09022.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2051377 2051504 . + . gene_id "RvY_09022"; transcript_id "RvY_09022.1"; Scaffold004 rebuild exon 2051563 2051716 . + . gene_id "RvY_09022"; transcript_id "RvY_09022.1"; Scaffold004 rebuild transcript 2052297 2053907 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2052297 2052423 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.1"; Scaffold004 rebuild exon 2052517 2053305 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.1"; Scaffold004 rebuild exon 2053534 2053907 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.1"; Scaffold004 rebuild transcript 2052297 2053907 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2052297 2052423 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.2"; Scaffold004 rebuild exon 2052517 2052787 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.2"; Scaffold004 rebuild exon 2052890 2053305 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.2"; Scaffold004 rebuild exon 2053534 2053907 . - . gene_id "RvY_09023"; transcript_id "RvY_09023.2"; Scaffold004 rebuild transcript 2055316 2057228 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; annotation "hypothetical protein."; similar_genes "(1)GRP2_SORBI(e-value:4.7e-13;bit-score:72.0)"; Scaffold004 rebuild exon 2055316 2055381 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; Scaffold004 rebuild exon 2055478 2055763 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; Scaffold004 rebuild exon 2056159 2056253 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; Scaffold004 rebuild exon 2056328 2056406 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; Scaffold004 rebuild exon 2056548 2056709 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; Scaffold004 rebuild exon 2056966 2057228 . + . gene_id "RvY_09024"; transcript_id "RvY_09024.1"; Scaffold004 rebuild transcript 2057335 2058047 . + . gene_id "RvY_09025"; transcript_id "RvY_09025.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2057335 2057448 . + . gene_id "RvY_09025"; transcript_id "RvY_09025.1"; Scaffold004 rebuild exon 2057577 2058047 . + . gene_id "RvY_09025"; transcript_id "RvY_09025.1"; Scaffold004 rebuild transcript 2057338 2058047 . + . gene_id "RvY_09025"; transcript_id "RvY_09025.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2057338 2057448 . + . gene_id "RvY_09025"; transcript_id "RvY_09025.2"; Scaffold004 rebuild exon 2057577 2058047 . + . gene_id "RvY_09025"; transcript_id "RvY_09025.2"; Scaffold004 rebuild transcript 2059957 2063224 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; gene_name "TC.CNT"; annotation "concentrative nucleoside transporter, CNT family"; Pfam "[Nucleos_tra2_C] Na+ dependent nucleoside transporter C-terminus|[Nucleos_tra2_N] Na+ dependent nucleoside transporter N-terminus"; CDD "nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities."; KO "K03317"; similar_genes "Y519_HAEIN(e-value:8.4e-19;bit-score:92.0)"; Scaffold004 rebuild exon 2059957 2060106 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2060188 2060381 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2060510 2060650 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2060725 2060827 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2060879 2061010 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2061093 2061191 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2061259 2061331 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2061400 2061430 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2061507 2061564 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2061640 2061702 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2061986 2062097 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2062203 2062235 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2062301 2062346 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2062418 2062586 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2062656 2062820 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2062883 2062910 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2062985 2063137 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild exon 2063208 2063224 . + . gene_id "RvY_09026"; transcript_id "RvY_09026.1"; Scaffold004 rebuild transcript 2064058 2064951 . - . gene_id "RvY_09027"; transcript_id "RvY_09027.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold004 rebuild exon 2064058 2064951 . - . gene_id "RvY_09027"; transcript_id "RvY_09027.1"; Scaffold004 rebuild transcript 2064958 2067499 . - . gene_id "RvY_09028"; transcript_id "RvY_09028.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2064958 2065143 . - . gene_id "RvY_09028"; transcript_id "RvY_09028.1"; Scaffold004 rebuild exon 2065697 2065926 . - . gene_id "RvY_09028"; transcript_id "RvY_09028.1"; Scaffold004 rebuild exon 2066316 2066400 . - . gene_id "RvY_09028"; transcript_id "RvY_09028.1"; Scaffold004 rebuild exon 2067479 2067499 . - . gene_id "RvY_09028"; transcript_id "RvY_09028.1"; Scaffold004 rebuild transcript 2068645 2069711 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; annotation "hypothetical protein."; Pfam "[TB2_DP1_HVA22] TB2/DP1, HVA22 family"; similar_genes "REEP6_RAT(e-value:2.4e-16;bit-score:83.0)"; Scaffold004 rebuild exon 2068645 2068855 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; Scaffold004 rebuild exon 2069014 2069107 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; Scaffold004 rebuild exon 2069175 2069261 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; Scaffold004 rebuild exon 2069327 2069378 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; Scaffold004 rebuild exon 2069445 2069553 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; Scaffold004 rebuild exon 2069620 2069711 . + . gene_id "RvY_09029"; transcript_id "RvY_09029.1"; Scaffold004 rebuild transcript 2070297 2072433 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; gene_name "PDI_b'_ERp44"; annotation "hypothetical protein."; Pfam "[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin]"; CDD "PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their Scaffold004 rebuild exon 2070297 2070443 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2070529 2070661 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2070728 2070869 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2070927 2071038 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2071127 2071240 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2071320 2071386 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2071452 2071570 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2071652 2071836 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2071906 2071951 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2072011 2072120 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2072213 2072297 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild exon 2072386 2072433 . - . gene_id "RvY_09030"; transcript_id "RvY_09030.1"; Scaffold004 rebuild transcript 2073085 2076256 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; gene_name "INTS7"; annotation "integrator complex subunit 7"; KO "K13144"; Scaffold004 rebuild exon 2073085 2073360 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; Scaffold004 rebuild exon 2073421 2073718 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; Scaffold004 rebuild exon 2073780 2074154 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; Scaffold004 rebuild exon 2074277 2075068 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; Scaffold004 rebuild exon 2075159 2075829 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; Scaffold004 rebuild exon 2075888 2076256 . + . gene_id "RvY_09031"; transcript_id "RvY_09031.1"; Scaffold004 rebuild transcript 2077162 2078884 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; annotation "putative Zinc finger protein 207"; similar_genes "ZN207_HUMAN(e-value:2.3e-44;bit-score:176.0)"; Scaffold004 rebuild exon 2077162 2077202 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2077326 2077452 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2077512 2077641 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2077730 2078060 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2078119 2078353 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2078432 2078629 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2078701 2078761 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild exon 2078859 2078884 . + . gene_id "RvY_09032"; transcript_id "RvY_09032.1"; Scaffold004 rebuild transcript 2079359 2081655 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; gene_name "RBPSUH"; annotation "Suppressor of hairless protein"; Pfam "[LAG1-DNAbind] LAG1, DNA binding|[BTD] Beta-trefoil DNA-binding domain"; CDD "Beta-trefoil. Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR)."; KO "K06053"; similar_genes "SUH_DROME(e-value:6.3e-138;bit-score:487.0)"; Scaffold004 rebuild exon 2079359 2079367 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2079441 2079557 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2079634 2079752 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2079818 2079884 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2079955 2080110 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2080252 2080505 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2080573 2080710 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2080783 2080957 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2081039 2081183 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2081340 2081514 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild exon 2081589 2081655 . - . gene_id "RvY_09033"; transcript_id "RvY_09033.1"; Scaffold004 rebuild transcript 2084338 2085924 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; annotation "putative Protein XRP2"; Pfam "[TBCC] Tubulin binding cofactor C"; similar_genes "XRP2_MOUSE(e-value:3.9e-42;bit-score:169.0)"; Scaffold004 rebuild exon 2084338 2084507 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild exon 2084613 2084796 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild exon 2084865 2085115 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild exon 2085170 2085342 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild exon 2085428 2085519 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild exon 2085606 2085726 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild exon 2085785 2085924 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.1"; Scaffold004 rebuild transcript 2084539 2085924 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; annotation "putative Protein XRP2"; Pfam "[TBCC] Tubulin binding cofactor C"; similar_genes "XRP2_MOUSE(e-value:3.9e-42;bit-score:169.0)"; Scaffold004 rebuild exon 2084539 2084796 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; Scaffold004 rebuild exon 2084865 2085115 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; Scaffold004 rebuild exon 2085170 2085342 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; Scaffold004 rebuild exon 2085428 2085519 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; Scaffold004 rebuild exon 2085606 2085726 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; Scaffold004 rebuild exon 2085785 2085924 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.2"; Scaffold004 rebuild transcript 2084784 2085924 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.3"; annotation "putative Protein XRP2"; Pfam "[TBCC] Tubulin binding cofactor C"; similar_genes "XRP2_MOUSE(e-value:3.9e-42;bit-score:169.0)"; Scaffold004 rebuild exon 2084784 2085115 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.3"; Scaffold004 rebuild exon 2085170 2085342 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.3"; Scaffold004 rebuild exon 2085428 2085519 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.3"; Scaffold004 rebuild exon 2085606 2085726 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.3"; Scaffold004 rebuild exon 2085785 2085924 . - . gene_id "RvY_09034"; transcript_id "RvY_09034.3"; Scaffold004 rebuild transcript 2086734 2088482 . - . gene_id "RvY_09035"; transcript_id "RvY_09035.1"; annotation "hypothetical protein."; Pfam "[wnt] wnt family"; Scaffold004 rebuild exon 2086734 2087312 . - . gene_id "RvY_09035"; transcript_id "RvY_09035.1"; Scaffold004 rebuild exon 2087410 2087690 . - . gene_id "RvY_09035"; transcript_id "RvY_09035.1"; Scaffold004 rebuild exon 2087863 2088149 . - . gene_id "RvY_09035"; transcript_id "RvY_09035.1"; Scaffold004 rebuild exon 2088409 2088482 . - . gene_id "RvY_09035"; transcript_id "RvY_09035.1"; Scaffold004 rebuild transcript 2090808 2092234 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; gene_name "(1)engB(2)YihA_EngB"; annotation "(1)GTP-binding protein(2)hypothetical protein."; Pfam "(1)[FeoB_N] Ferrous iron transport protein B|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|(1)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target."; KO "(1)K03978"; similar_genes "(1)GTPB8_BOVIN(e-value:6.6e-23;bit-score:105.0)(2)GTPB8_BOVIN(e-value:1.7e-23;bit-score:107.0)"; Scaffold004 rebuild exon 2090808 2090933 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; Scaffold004 rebuild exon 2090991 2091090 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; Scaffold004 rebuild exon 2091303 2091433 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; Scaffold004 rebuild exon 2091522 2091620 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; Scaffold004 rebuild exon 2091741 2091896 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; Scaffold004 rebuild exon 2091977 2092234 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.1"; Scaffold004 rebuild transcript 2090808 2092234 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; gene_name "(1)engB(2)YihA_EngB"; annotation "(1)GTP-binding protein(2)hypothetical protein."; Pfam "(1)[FeoB_N] Ferrous iron transport protein B|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|(1)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target."; KO "(1)K03978"; similar_genes "(1)GTPB8_BOVIN(e-value:6.6e-23;bit-score:105.0)(2)GTPB8_BOVIN(e-value:1.7e-23;bit-score:107.0)"; Scaffold004 rebuild exon 2090808 2090933 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; Scaffold004 rebuild exon 2091118 2091208 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; Scaffold004 rebuild exon 2091303 2091433 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; Scaffold004 rebuild exon 2091522 2091620 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; Scaffold004 rebuild exon 2091741 2091896 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; Scaffold004 rebuild exon 2091977 2092234 . - . gene_id "RvY_09036"; transcript_id "RvY_09036.2"; Scaffold004 rebuild transcript 2093304 2095085 . - . gene_id "RvY_09037"; transcript_id "RvY_09037.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold004 rebuild exon 2093304 2093648 . - . gene_id "RvY_09037"; transcript_id "RvY_09037.1"; Scaffold004 rebuild exon 2093655 2093789 . - . gene_id "RvY_09037"; transcript_id "RvY_09037.1"; Scaffold004 rebuild exon 2093811 2093933 . - . gene_id "RvY_09037"; transcript_id "RvY_09037.1"; Scaffold004 rebuild exon 2094255 2095085 . - . gene_id "RvY_09037"; transcript_id "RvY_09037.1"; Scaffold004 rebuild transcript 2096281 2097278 . + . gene_id "RvY_09038"; transcript_id "RvY_09038.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2096281 2096473 . + . gene_id "RvY_09038"; transcript_id "RvY_09038.1"; Scaffold004 rebuild exon 2096604 2096831 . + . gene_id "RvY_09038"; transcript_id "RvY_09038.1"; Scaffold004 rebuild exon 2096969 2097040 . + . gene_id "RvY_09038"; transcript_id "RvY_09038.1"; Scaffold004 rebuild exon 2097268 2097278 . + . gene_id "RvY_09038"; transcript_id "RvY_09038.1"; Scaffold004 rebuild transcript 2097543 2098100 . - . gene_id "RvY_09039"; transcript_id "RvY_09039.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2097543 2097692 . - . gene_id "RvY_09039"; transcript_id "RvY_09039.1"; Scaffold004 rebuild exon 2098074 2098100 . - . gene_id "RvY_09039"; transcript_id "RvY_09039.1"; Scaffold004 rebuild transcript 2098353 2098775 . + . gene_id "RvY_09040"; transcript_id "RvY_09040.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2098353 2098433 . + . gene_id "RvY_09040"; transcript_id "RvY_09040.1"; Scaffold004 rebuild exon 2098548 2098775 . + . gene_id "RvY_09040"; transcript_id "RvY_09040.1"; Scaffold004 rebuild transcript 2099548 2104688 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; gene_name "MYO6"; annotation "Myosin-VI"; Pfam "[Myosin_head] Myosin head (motor domain)"; CDD "Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle."; KO "K10358"; similar_genes "MYO6_HUMAN(e-value:7.5e-92;bit-score:334.0)"; Scaffold004 rebuild exon 2099548 2099714 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2099791 2100003 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2100086 2100217 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2100286 2100380 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2100447 2100586 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2100649 2101309 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2101381 2101664 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2101726 2102133 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2102197 2102243 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2102364 2102504 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2102574 2102597 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2102672 2102829 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2102905 2103153 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2103214 2103521 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2103611 2103708 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2103786 2103881 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2103949 2104017 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2104082 2104130 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2104192 2104346 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2104417 2104486 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild exon 2104563 2104688 . - . gene_id "RvY_09041"; transcript_id "RvY_09041.1"; Scaffold004 rebuild transcript 2106306 2107538 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; gene_name "fabG"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Provisional"; EC "EC1.-.-.-"; similar_genes "Y325_THEMA(e-value:1.0e-06;bit-score:51.0)"; Scaffold004 rebuild exon 2106306 2106327 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild exon 2106393 2106625 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild exon 2106703 2106809 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild exon 2106907 2107041 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild exon 2107105 2107236 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild exon 2107311 2107403 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild exon 2107487 2107538 . - . gene_id "RvY_09042"; transcript_id "RvY_09042.1"; Scaffold004 rebuild transcript 2109475 2111208 . + . gene_id "RvY_09043"; transcript_id "RvY_09043.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2109475 2110327 . + . gene_id "RvY_09043"; transcript_id "RvY_09043.1"; Scaffold004 rebuild exon 2110616 2111208 . + . gene_id "RvY_09043"; transcript_id "RvY_09043.1"; Scaffold004 rebuild transcript 2111439 2116029 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14005"; similar_genes "SC31B_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold004 rebuild exon 2111439 2111843 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2111922 2112152 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2112233 2112375 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2112462 2112570 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2112635 2112802 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2112877 2113008 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2113089 2113298 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2113357 2113516 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2113639 2113956 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2114016 2114320 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2114387 2114654 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2114797 2115267 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2115339 2115508 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2115573 2115716 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild exon 2115781 2116029 . + . gene_id "RvY_09044"; transcript_id "RvY_09044.1"; Scaffold004 rebuild transcript 2117163 2119362 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2117163 2117487 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild exon 2117548 2117669 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild exon 2117764 2117919 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild exon 2118000 2118077 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild exon 2118139 2118243 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild exon 2118885 2118977 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild exon 2119048 2119362 . + . gene_id "RvY_09045"; transcript_id "RvY_09045.1"; Scaffold004 rebuild transcript 2126057 2131948 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[Sorb] Sorbin homologous domain|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[SH3_3] Bacterial SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "SRBS2_RAT(e-value:1.3e-06;bit-score:51.0)"; Scaffold004 rebuild exon 2126057 2126167 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2126239 2126395 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2126454 2126638 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2126726 2126801 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2126941 2126976 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2127045 2127119 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2127241 2127303 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2127381 2127622 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2127935 2128154 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2130172 2130270 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2130351 2130810 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2130869 2130983 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2131088 2131199 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2131280 2131360 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild exon 2131431 2131948 . + . gene_id "RvY_09046"; transcript_id "RvY_09046.1"; Scaffold004 rebuild transcript 2132621 2133654 . - . gene_id "RvY_09047"; transcript_id "RvY_09047.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2132621 2132789 . - . gene_id "RvY_09047"; transcript_id "RvY_09047.1"; Scaffold004 rebuild exon 2132911 2132999 . - . gene_id "RvY_09047"; transcript_id "RvY_09047.1"; Scaffold004 rebuild exon 2133237 2133397 . - . gene_id "RvY_09047"; transcript_id "RvY_09047.1"; Scaffold004 rebuild exon 2133486 2133654 . - . gene_id "RvY_09047"; transcript_id "RvY_09047.1"; Scaffold004 rebuild transcript 2134427 2134579 . + . gene_id "RvY_09048"; transcript_id "RvY_09048.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2134427 2134579 . + . gene_id "RvY_09048"; transcript_id "RvY_09048.1"; Scaffold004 rebuild transcript 2135073 2141640 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; gene_name "RPB1"; annotation "DNA-directed RNA polymerase II subunit RPB1"; Pfam "[RNA_pol_Rpb1_4] RNA polymerase Rpb1, domain 4|[RNA_pol_Rpb1_1] RNA polymerase Rpb1, domain 1|[RNA_pol_Rpb1_7] RNA polymerase Rpb1, domain 7|[RNA_pol_Rpb1_3] RNA polymerase Rpb1, domain 3|[RNA_pol_Rpb1_6] RNA polymerase Rpb1, domain 6|[RNA_pol_Rpb1_2] RNA polymerase Rpb1, domain 2|[RNA_pol_Rpb1_5] RNA polymerase Rpb1, domain 5"; CDD "DNA-directed RNA polymerase subunit alpha; Validated"; EC "EC2.7.7.6"; KO "K03006"; similar_genes "RPB1_DROME(e-value:0.0e+00;bit-score:1139.0)"; Scaffold004 rebuild exon 2135073 2135115 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2135181 2135249 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2135325 2135366 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2135439 2135513 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2135578 2135730 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2135800 2135886 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2135965 2136081 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2136142 2136439 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2136650 2137205 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2137486 2137907 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2138070 2138517 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2138585 2138873 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2138936 2139369 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2139671 2140138 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2140219 2140428 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2140491 2140701 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2140779 2140903 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2140986 2141339 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild exon 2141401 2141640 . - . gene_id "RvY_09049"; transcript_id "RvY_09049.1"; Scaffold004 rebuild transcript 2141700 2142781 . - . gene_id "RvY_09050"; transcript_id "RvY_09050.1"; annotation "DNA-directed RNA polymerase II subunit RPB1"; Pfam "[RNA_pol_Rpb1_1] RNA polymerase Rpb1, domain 1"; EC "EC2.7.7.6"; similar_genes "RPB1_DROME(e-value:4.6e-64;bit-score:242.0)"; Scaffold004 rebuild exon 2141700 2141921 . - . gene_id "RvY_09050"; transcript_id "RvY_09050.1"; Scaffold004 rebuild exon 2141981 2142148 . - . gene_id "RvY_09050"; transcript_id "RvY_09050.1"; Scaffold004 rebuild exon 2142214 2142329 . - . gene_id "RvY_09050"; transcript_id "RvY_09050.1"; Scaffold004 rebuild exon 2142467 2142620 . - . gene_id "RvY_09050"; transcript_id "RvY_09050.1"; Scaffold004 rebuild exon 2142692 2142781 . - . gene_id "RvY_09050"; transcript_id "RvY_09050.1"; Scaffold004 rebuild transcript 2144190 2145733 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; gene_name "CAB39"; annotation "Calcium-binding protein 39"; Pfam "[Mo25] Mo25-like"; CDD "Mo25-like. Mo25-like proteins are involved in both polarized growth and cytokinesis. In fission yeast Mo25 is localized alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner."; KO "K08272"; similar_genes "CAB39_BOVIN(e-value:5.6e-107;bit-score:384.0)"; Scaffold004 rebuild exon 2144190 2144294 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild exon 2144417 2144584 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild exon 2144669 2144787 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild exon 2144859 2145027 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild exon 2145093 2145218 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild exon 2145339 2145482 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild exon 2145542 2145733 . + . gene_id "RvY_09051"; transcript_id "RvY_09051.1"; Scaffold004 rebuild transcript 2146106 2150160 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[BAR]|[RhoGEF]|[SH3_1] SH3 domain"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; Scaffold004 rebuild exon 2146106 2147074 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2147150 2147311 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2147386 2147511 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2147605 2147709 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2147819 2147952 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2148043 2148148 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2148261 2148410 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2148513 2148707 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2148770 2149540 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2149613 2149809 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild exon 2149869 2150160 . - . gene_id "RvY_09052"; transcript_id "RvY_09052.1"; Scaffold004 rebuild transcript 2150580 2151653 . + . gene_id "RvY_09053"; transcript_id "RvY_09053.1"; annotation "hypothetical protein."; Pfam "[Adaptin_binding] Alpha and gamma adaptin binding protein p34"; Scaffold004 rebuild exon 2150580 2150658 . + . gene_id "RvY_09053"; transcript_id "RvY_09053.1"; Scaffold004 rebuild exon 2150752 2151110 . + . gene_id "RvY_09053"; transcript_id "RvY_09053.1"; Scaffold004 rebuild exon 2151184 2151501 . + . gene_id "RvY_09053"; transcript_id "RvY_09053.1"; Scaffold004 rebuild exon 2151597 2151653 . + . gene_id "RvY_09053"; transcript_id "RvY_09053.1"; Scaffold004 rebuild transcript 2151826 2153292 . - . gene_id "RvY_09054"; transcript_id "RvY_09054.1"; gene_name "EGH"; annotation "Beta-1,4-mannosyltransferase egh"; Pfam "[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_trans_2_3] Glycosyl transferase family group 2"; CDD "Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]"; EC "EC2.4.1.-"; KO "K02359"; similar_genes "EGH_DROME(e-value:4.8e-68;bit-score:255.0)"; Scaffold004 rebuild exon 2151826 2152610 . - . gene_id "RvY_09054"; transcript_id "RvY_09054.1"; Scaffold004 rebuild exon 2152665 2153292 . - . gene_id "RvY_09054"; transcript_id "RvY_09054.1"; Scaffold004 rebuild transcript 2154498 2158314 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; gene_name "(1)PLA2G(2)Pat_PNPLA9"; annotation "(1)phospholipase A2 [EC:3.1.1.4](2)hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Patatin] Patatin-like phospholipase|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus."; EC "EC3.1.1.4"; KO "(1)K01047"; similar_genes "PA2G6_HUMAN(e-value:3.1e-14;bit-score:76.0)"; Scaffold004 rebuild exon 2154498 2154757 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2154820 2155219 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2155348 2155535 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2155619 2155775 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2155864 2156349 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2156439 2156592 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2156944 2157094 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2157151 2157299 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2157413 2157567 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2157622 2157701 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2157813 2157900 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2157958 2158004 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2158073 2158154 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild exon 2158225 2158314 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.1"; Scaffold004 rebuild transcript 2154498 2158008 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; gene_name "(1)PLA2G(2)Pat_PNPLA9"; annotation "(1)phospholipase A2 [EC:3.1.1.4](2)hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Patatin] Patatin-like phospholipase|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus."; EC "EC3.1.1.4"; KO "(1)K01047"; similar_genes "PA2G6_HUMAN(e-value:3.1e-14;bit-score:76.0)"; Scaffold004 rebuild exon 2154498 2154757 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2154820 2155219 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2155348 2155535 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2155619 2155775 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2155864 2156349 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2156439 2156592 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2156944 2157094 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2157151 2157299 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2157413 2157567 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2157622 2157701 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2157813 2157900 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild exon 2157958 2158008 . + . gene_id "RvY_09055"; transcript_id "RvY_09055.2"; Scaffold004 rebuild transcript 2158714 2160266 . + . gene_id "RvY_09056"; transcript_id "RvY_09056.1"; gene_name "eIF-4E"; annotation "translation initiation factor eIF-4E"; Pfam "[IF4E] Eukaryotic initiation factor 4E"; KO "K03259"; Scaffold004 rebuild exon 2158714 2158870 . + . gene_id "RvY_09056"; transcript_id "RvY_09056.1"; Scaffold004 rebuild exon 2158936 2159034 . + . gene_id "RvY_09056"; transcript_id "RvY_09056.1"; Scaffold004 rebuild exon 2159120 2159926 . + . gene_id "RvY_09056"; transcript_id "RvY_09056.1"; Scaffold004 rebuild exon 2160007 2160266 . + . gene_id "RvY_09056"; transcript_id "RvY_09056.1"; Scaffold004 rebuild transcript 2160623 2170159 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; annotation "putative Autophagy-related protein 2 homolog B"; Pfam "[Chorein_N] N-terminal region of Chorein, a TM vesicle-mediated sorter|[ATG_C] ATG C terminal domain"; similar_genes "ATG2B_HUMAN(e-value:2.0e-45;bit-score:180.0)"; Scaffold004 rebuild exon 2160623 2160877 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2162165 2162311 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2162526 2162680 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2162749 2162870 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2162940 2163351 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2163444 2163627 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2163686 2163859 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2163930 2164060 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2164135 2164387 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2164452 2164696 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2164772 2165408 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2165688 2166357 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2166420 2166877 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2167140 2168016 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2168135 2168490 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2168568 2168816 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2168895 2169087 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2169418 2169673 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2169753 2169921 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild exon 2169992 2170159 . - . gene_id "RvY_09057"; transcript_id "RvY_09057.1"; Scaffold004 rebuild transcript 2161377 2161908 . + . gene_id "RvY_09058"; transcript_id "RvY_09058.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2161377 2161391 . + . gene_id "RvY_09058"; transcript_id "RvY_09058.1"; Scaffold004 rebuild exon 2161465 2161908 . + . gene_id "RvY_09058"; transcript_id "RvY_09058.1"; Scaffold004 rebuild transcript 2170852 2171550 . + . gene_id "RvY_09059"; transcript_id "RvY_09059.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_5] EF-hand domain pair"; Scaffold004 rebuild exon 2170852 2171045 . + . gene_id "RvY_09059"; transcript_id "RvY_09059.1"; Scaffold004 rebuild exon 2171143 2171303 . + . gene_id "RvY_09059"; transcript_id "RvY_09059.1"; Scaffold004 rebuild exon 2171402 2171550 . + . gene_id "RvY_09059"; transcript_id "RvY_09059.1"; Scaffold004 rebuild transcript 2172156 2175913 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; annotation "Homeobox protein prospero"; Pfam "[Prox1] Homeobox prospero-like protein (PROX1)"; similar_genes "PROS_DROVI(e-value:4.8e-68;bit-score:255.0)"; Scaffold004 rebuild exon 2172156 2172335 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; Scaffold004 rebuild exon 2172409 2172553 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; Scaffold004 rebuild exon 2172646 2172823 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; Scaffold004 rebuild exon 2173563 2174078 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; Scaffold004 rebuild exon 2174271 2175071 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; Scaffold004 rebuild exon 2175376 2175913 . - . gene_id "RvY_09060"; transcript_id "RvY_09060.1"; Scaffold004 rebuild transcript 2178012 2178239 . + . gene_id "RvY_09061"; transcript_id "RvY_09061.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2178012 2178239 . + . gene_id "RvY_09061"; transcript_id "RvY_09061.1"; Scaffold004 rebuild transcript 2182249 2182711 . - . gene_id "RvY_09062"; transcript_id "RvY_09062.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2182249 2182373 . - . gene_id "RvY_09062"; transcript_id "RvY_09062.1"; Scaffold004 rebuild exon 2182681 2182711 . - . gene_id "RvY_09062"; transcript_id "RvY_09062.1"; Scaffold004 rebuild transcript 2186664 2187438 . - . gene_id "RvY_09063"; transcript_id "RvY_09063.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2186664 2187037 . - . gene_id "RvY_09063"; transcript_id "RvY_09063.1"; Scaffold004 rebuild exon 2187216 2187438 . - . gene_id "RvY_09063"; transcript_id "RvY_09063.1"; Scaffold004 rebuild transcript 2189329 2189852 . - . gene_id "RvY_09064"; transcript_id "RvY_09064.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2189329 2189574 . - . gene_id "RvY_09064"; transcript_id "RvY_09064.1"; Scaffold004 rebuild exon 2189730 2189852 . - . gene_id "RvY_09064"; transcript_id "RvY_09064.1"; Scaffold004 rebuild transcript 2190917 2193860 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; gene_name "CRN"; annotation "Crooked neck-like protein 1"; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[HAT] HAT (Half-A-TPR) repeat|[TPR_17] Tetratricopeptide repeat|[Suf] Suppressor of forked protein (Suf)"; CDD "HAT (Half-A-TPR) repeat. The HAT (Half A TPR) repeat is found in several RNA processing proteins."; KO "K12869"; similar_genes "CRNL1_MOUSE(e-value:8.7e-146;bit-score:513.0)"; Scaffold004 rebuild exon 2190917 2190964 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2191100 2191189 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2191305 2191459 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2191525 2191608 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2191676 2191801 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2191866 2192160 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2192233 2192736 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2192808 2192954 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2193018 2193212 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2193290 2193463 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild exon 2193525 2193860 . + . gene_id "RvY_09065"; transcript_id "RvY_09065.1"; Scaffold004 rebuild transcript 2194142 2194960 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.1"; gene_name "K00670"; annotation "peptide alpha-N-acetyltransferase [EC:2.3.1.88]"; Pfam "[FR47] FR47-like protein|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "Acetyltransferases [General function prediction only]"; EC "EC2.3.1.88"; KO "K00670"; similar_genes "NAT5_HUMAN(e-value:3.9e-08;bit-score:56.0)"; Scaffold004 rebuild exon 2194142 2194370 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.1"; Scaffold004 rebuild exon 2194432 2194561 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.1"; Scaffold004 rebuild exon 2194630 2194720 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.1"; Scaffold004 rebuild exon 2194789 2194813 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.1"; Scaffold004 rebuild exon 2194899 2194960 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.1"; Scaffold004 rebuild transcript 2194142 2194836 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.2"; gene_name "K00670"; annotation "peptide alpha-N-acetyltransferase [EC:2.3.1.88]"; Pfam "[FR47] FR47-like protein|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "Acetyltransferases [General function prediction only]"; EC "EC2.3.1.88"; KO "K00670"; similar_genes "NAT5_HUMAN(e-value:3.9e-08;bit-score:56.0)"; Scaffold004 rebuild exon 2194142 2194370 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.2"; Scaffold004 rebuild exon 2194432 2194561 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.2"; Scaffold004 rebuild exon 2194630 2194720 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.2"; Scaffold004 rebuild exon 2194789 2194836 . - . gene_id "RvY_09066"; transcript_id "RvY_09066.2"; Scaffold004 rebuild transcript 2195379 2198026 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; gene_name "K06013"; annotation "putative CAAX prenyl protease 1 homolog"; Pfam "[Peptidase_M48] Peptidase family M48"; EC "EC3.4.24.84"; KO "K06013"; similar_genes "FACE1_HUMAN(e-value:2.7e-30;bit-score:130.0)"; Scaffold004 rebuild exon 2195379 2195555 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2195747 2195893 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2196080 2196166 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2196248 2196283 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2196357 2196437 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2196496 2196594 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2196672 2196728 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2196795 2196936 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2197021 2197190 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2197324 2197434 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2197522 2197665 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2197724 2197877 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild exon 2197962 2198026 . + . gene_id "RvY_09067"; transcript_id "RvY_09067.1"; Scaffold004 rebuild transcript 2198227 2199171 . - . gene_id "RvY_09068"; transcript_id "RvY_09068.1"; gene_name "Mlf1IP"; annotation "hypothetical protein."; Pfam "[Mlf1IP] Myelodysplasia-myeloid leukemia factor 1-interacting protein"; CDD "Myelodysplasia-myeloid leukemia factor 1-interacting protein. This entry is the conserved central region of a group of proteins that are putative transcriptional repressors. The structure contains a putative 14-3-3 binding motif involved in the subcellular localisation of various regulatory molecules, and it may be that interaction with the transcription factor DREF could be regulated through this motif. DREF regulates proliferation-related genes in Drosophila. Mlf1IP is expressed in both the nuclei and the cytoplasm and thus may have multi-functions."; KO "K15622"; Scaffold004 rebuild exon 2198227 2198399 . - . gene_id "RvY_09068"; transcript_id "RvY_09068.1"; Scaffold004 rebuild exon 2198479 2198638 . - . gene_id "RvY_09068"; transcript_id "RvY_09068.1"; Scaffold004 rebuild exon 2198769 2198918 . - . gene_id "RvY_09068"; transcript_id "RvY_09068.1"; Scaffold004 rebuild exon 2199022 2199171 . - . gene_id "RvY_09068"; transcript_id "RvY_09068.1"; Scaffold004 rebuild transcript 2200249 2201041 . - . gene_id "RvY_09069"; transcript_id "RvY_09069.1"; gene_name "DUF842"; annotation "hypothetical protein."; Pfam "[DUF842] Eukaryotic protein of unknown function (DUF842)"; CDD "Eukaryotic protein of unknown function (DUF842). This family consists of a number of conserved eukaryotic proteins of unknown function. The GO annotation suggests this protein is involved in nematode larval development and has a positive regulation on growth rate."; Scaffold004 rebuild exon 2200249 2200404 . - . gene_id "RvY_09069"; transcript_id "RvY_09069.1"; Scaffold004 rebuild exon 2200491 2200523 . - . gene_id "RvY_09069"; transcript_id "RvY_09069.1"; Scaffold004 rebuild exon 2200703 2200843 . - . gene_id "RvY_09069"; transcript_id "RvY_09069.1"; Scaffold004 rebuild exon 2200958 2201041 . - . gene_id "RvY_09069"; transcript_id "RvY_09069.1"; Scaffold004 rebuild transcript 2202891 2204009 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; annotation "hypothetical protein."; Pfam "[Prefoldin] Prefoldin subunit"; Scaffold004 rebuild exon 2202891 2202958 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; Scaffold004 rebuild exon 2203036 2203174 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; Scaffold004 rebuild exon 2203353 2203442 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; Scaffold004 rebuild exon 2203551 2203614 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; Scaffold004 rebuild exon 2203707 2203831 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; Scaffold004 rebuild exon 2203911 2204009 . - . gene_id "RvY_09070"; transcript_id "RvY_09070.1"; Scaffold004 rebuild transcript 2204386 2209129 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2204386 2204479 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2204563 2204644 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2204704 2204845 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2204906 2205108 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2205190 2205482 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2205539 2205789 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2205852 2205995 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2206063 2206328 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2206396 2206471 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2206616 2207263 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2207375 2207528 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2207655 2207764 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2207824 2207940 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2208011 2208241 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2208314 2208490 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2208567 2208735 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2208799 2208912 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild exon 2208984 2209129 . + . gene_id "RvY_09071"; transcript_id "RvY_09071.1"; Scaffold004 rebuild transcript 2209330 2210820 . - . gene_id "RvY_09072"; transcript_id "RvY_09072.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2209330 2210123 . - . gene_id "RvY_09072"; transcript_id "RvY_09072.1"; Scaffold004 rebuild exon 2210210 2210414 . - . gene_id "RvY_09072"; transcript_id "RvY_09072.1"; Scaffold004 rebuild exon 2210590 2210820 . - . gene_id "RvY_09072"; transcript_id "RvY_09072.1"; Scaffold004 rebuild transcript 2211705 2214721 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; annotation "Nucleobindin-2"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; similar_genes "NUCB2_RAT(e-value:4.8e-51;bit-score:199.0)"; Scaffold004 rebuild exon 2211705 2212155 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2212234 2212334 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2212408 2212559 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2213564 2213654 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2213719 2213904 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2213976 2214061 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2214132 2214255 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2214395 2214502 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild exon 2214587 2214721 . - . gene_id "RvY_09073"; transcript_id "RvY_09073.1"; Scaffold004 rebuild transcript 2214796 2221345 . + . gene_id "RvY_09074"; transcript_id "RvY_09074.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2214796 2215072 . + . gene_id "RvY_09074"; transcript_id "RvY_09074.1"; Scaffold004 rebuild exon 2221275 2221345 . + . gene_id "RvY_09074"; transcript_id "RvY_09074.1"; Scaffold004 rebuild transcript 2219753 2220102 . - . gene_id "RvY_09075"; transcript_id "RvY_09075.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2219753 2219766 . - . gene_id "RvY_09075"; transcript_id "RvY_09075.1"; Scaffold004 rebuild exon 2219940 2220102 . - . gene_id "RvY_09075"; transcript_id "RvY_09075.1"; Scaffold004 rebuild transcript 2221513 2227666 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; gene_name "PIK3C2"; annotation "Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta"; Pfam "[PX]|[PI3Ka] Phosphoinositide 3-kinase family, accessory domain (PIK domain)|[PI3K_C2] Phosphoinositide 3-kinase C2|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase|[PI3K_rbd] PI3-kinase family, ras-binding domain|[C2]"; CDD "Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. They are activated by a variety of stimuli including chemokines, cytokines, lysophosphatidic acid (LPA), insulin, and tyrosine kinase receptors."; EC "EC2.7.1.154"; KO "K00923"; similar_genes "P3C2B_HUMAN(e-value:5.7e-56;bit-score:215.0)"; Scaffold004 rebuild exon 2221513 2221534 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2221660 2222813 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2223050 2223428 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2223491 2223773 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2224041 2224598 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2224657 2224740 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2224822 2225010 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2225116 2225624 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2225824 2226099 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2226159 2226197 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2226256 2226962 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2227026 2227235 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2227308 2227433 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild exon 2227493 2227666 . + . gene_id "RvY_09076"; transcript_id "RvY_09076.1"; Scaffold004 rebuild transcript 2228256 2230132 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; gene_name "CzcD"; annotation "hypothetical protein."; Pfam "[Cation_efflux] Cation efflux family"; CDD "Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]"; Scaffold004 rebuild exon 2228256 2228456 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2228517 2228702 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2228778 2229175 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2229247 2229317 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2229527 2229636 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2229710 2229772 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2229848 2229957 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild exon 2230051 2230132 . - . gene_id "RvY_09077"; transcript_id "RvY_09077.1"; Scaffold004 rebuild transcript 2231275 2232154 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; annotation "Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta"; Pfam "[GMP_PDE_delta] GMP-PDE, delta subunit"; KO "K13758"; similar_genes "PDE6D_BOVIN(e-value:8.9e-61;bit-score:231.0)"; Scaffold004 rebuild exon 2231275 2231356 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; Scaffold004 rebuild exon 2231416 2231521 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; Scaffold004 rebuild exon 2231597 2231722 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; Scaffold004 rebuild exon 2231809 2231834 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; Scaffold004 rebuild exon 2231934 2231996 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; Scaffold004 rebuild exon 2232078 2232154 . - . gene_id "RvY_09078"; transcript_id "RvY_09078.1"; Scaffold004 rebuild transcript 2232745 2237184 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2232745 2233424 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; Scaffold004 rebuild exon 2233491 2233619 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; Scaffold004 rebuild exon 2233706 2233963 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; Scaffold004 rebuild exon 2234776 2234977 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; Scaffold004 rebuild exon 2235052 2235965 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; Scaffold004 rebuild exon 2237124 2237184 . - . gene_id "RvY_09079"; transcript_id "RvY_09079.1"; Scaffold004 rebuild transcript 2237499 2237885 . + . gene_id "RvY_09080"; transcript_id "RvY_09080.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2237499 2237885 . + . gene_id "RvY_09080"; transcript_id "RvY_09080.1"; Scaffold004 rebuild transcript 2238578 2240967 . + . gene_id "RvY_09081"; transcript_id "RvY_09081.1"; gene_name "CactinC_cactus"; annotation "Uncharacterized protein C19orf29"; Pfam "[Cactin_mid] Conserved mid region of cactin|[CactinC_cactus] Cactus-binding C-terminus of cactin protein"; CDD "Cactus-binding C-terminus of cactin protein. CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain pfam10312 further upstream."; similar_genes "CS029_HUMAN(e-value:1.4e-71;bit-score:267.0)"; Scaffold004 rebuild exon 2238578 2238666 . + . gene_id "RvY_09081"; transcript_id "RvY_09081.1"; Scaffold004 rebuild exon 2238757 2239140 . + . gene_id "RvY_09081"; transcript_id "RvY_09081.1"; Scaffold004 rebuild exon 2239239 2239845 . + . gene_id "RvY_09081"; transcript_id "RvY_09081.1"; Scaffold004 rebuild exon 2239995 2240397 . + . gene_id "RvY_09081"; transcript_id "RvY_09081.1"; Scaffold004 rebuild exon 2240528 2240967 . + . gene_id "RvY_09081"; transcript_id "RvY_09081.1"; Scaffold004 rebuild transcript 2241014 2243102 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; gene_name "PTDSS2"; annotation "Phosphatidylserine synthase 2"; Pfam "[PSS] Phosphatidyl serine synthase"; EC "EC2.7.8.-"; KO "K08730"; similar_genes "PTSS2_HUMAN(e-value:3.1e-82;bit-score:302.0)"; Scaffold004 rebuild exon 2241014 2241359 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2241424 2241569 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2241646 2241760 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2241828 2241946 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2242013 2242177 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2242263 2242394 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2242544 2242694 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2242773 2242874 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild exon 2242942 2243102 . - . gene_id "RvY_09082"; transcript_id "RvY_09082.1"; Scaffold004 rebuild transcript 2241665 2242738 . + . gene_id "RvY_09083"; transcript_id "RvY_09083.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2241665 2242147 . + . gene_id "RvY_09083"; transcript_id "RvY_09083.1"; Scaffold004 rebuild exon 2242550 2242738 . + . gene_id "RvY_09083"; transcript_id "RvY_09083.1"; Scaffold004 rebuild transcript 2244047 2245565 . + . gene_id "RvY_09084"; transcript_id "RvY_09084.1"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold004 rebuild exon 2244047 2244556 . + . gene_id "RvY_09084"; transcript_id "RvY_09084.1"; Scaffold004 rebuild exon 2244623 2245103 . + . gene_id "RvY_09084"; transcript_id "RvY_09084.1"; Scaffold004 rebuild exon 2245177 2245565 . + . gene_id "RvY_09084"; transcript_id "RvY_09084.1"; Scaffold004 rebuild transcript 2247060 2254069 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; gene_name "CYCc"; annotation "Soluble guanylate cyclase 88E"; Pfam "[HNOBA] Heme NO binding associated|(1,2)[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GCY8E_DROME(e-value:2.2e-93;bit-score:339.0)"; Scaffold004 rebuild exon 2247060 2247292 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2247554 2247634 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2247720 2247744 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2247855 2247936 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2248895 2249197 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2249261 2249322 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2249594 2249720 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2249833 2249891 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2249987 2250023 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2250111 2250250 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2250384 2250429 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2250519 2250619 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2250687 2250793 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2250869 2250912 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2250985 2251137 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2251213 2251248 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2252176 2252200 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2252282 2252330 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2252416 2252508 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2252577 2253624 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild exon 2253756 2254069 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.1"; Scaffold004 rebuild transcript 2247060 2253873 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; gene_name "CYCc"; annotation "Soluble guanylate cyclase 88E"; Pfam "[HNOBA] Heme NO binding associated|(1,2)[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GCY8E_DROME(e-value:2.2e-93;bit-score:339.0)"; Scaffold004 rebuild exon 2247060 2247292 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2247554 2247634 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2247720 2247744 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2247855 2247936 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2248895 2249197 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2249261 2249322 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2249594 2249720 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2249833 2249891 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2249987 2250023 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2250111 2250250 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2250384 2250429 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2250519 2250619 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2250687 2250793 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2250869 2250912 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2250985 2251137 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2251213 2251248 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2252176 2252200 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2252282 2252330 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2252416 2252508 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2252577 2253624 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild exon 2253794 2253873 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.2"; Scaffold004 rebuild transcript 2248885 2253632 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; gene_name "CYCc"; annotation "Soluble guanylate cyclase 88E"; Pfam "[HNOBA] Heme NO binding associated|(1,2)[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GCY8E_DROME(e-value:2.2e-93;bit-score:339.0)"; Scaffold004 rebuild exon 2248885 2249197 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2249261 2249322 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2249594 2249720 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2249833 2249891 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2249987 2250023 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2250111 2250250 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2250384 2250429 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2250519 2250619 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2250687 2250793 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2250869 2250912 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2250985 2251137 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2251213 2251248 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2252176 2252200 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2252282 2252330 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2252416 2252508 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild exon 2252577 2253632 . + . gene_id "RvY_09085"; transcript_id "RvY_09085.3"; Scaffold004 rebuild transcript 2256226 2256678 . + . gene_id "RvY_09086"; transcript_id "RvY_09086.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2256226 2256678 . + . gene_id "RvY_09086"; transcript_id "RvY_09086.1"; Scaffold004 rebuild transcript 2257411 2258283 . + . gene_id "RvY_09087"; transcript_id "RvY_09087.1"; annotation "hypothetical protein."; Pfam "[DUF297] TM1410 hypothetical-related protein"; Scaffold004 rebuild exon 2257411 2258283 . + . gene_id "RvY_09087"; transcript_id "RvY_09087.1"; Scaffold004 rebuild transcript 2258525 2259121 . + . gene_id "RvY_09088"; transcript_id "RvY_09088.1"; gene_name "COG0229"; annotation "hypothetical protein."; Pfam "[SelR]"; CDD "Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]"; EC "EC1.8.4.-"; similar_genes "MSRB1_PIG(e-value:4.9e-19;bit-score:92.0)"; Scaffold004 rebuild exon 2258525 2258579 . + . gene_id "RvY_09088"; transcript_id "RvY_09088.1"; Scaffold004 rebuild exon 2258794 2258951 . + . gene_id "RvY_09088"; transcript_id "RvY_09088.1"; Scaffold004 rebuild exon 2259044 2259121 . + . gene_id "RvY_09088"; transcript_id "RvY_09088.1"; Scaffold004 rebuild transcript 2258798 2259446 . - . gene_id "RvY_09089"; transcript_id "RvY_09089.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2258798 2258945 . - . gene_id "RvY_09089"; transcript_id "RvY_09089.1"; Scaffold004 rebuild exon 2259022 2259446 . - . gene_id "RvY_09089"; transcript_id "RvY_09089.1"; Scaffold004 rebuild transcript 2259018 2259446 . - . gene_id "RvY_09089"; transcript_id "RvY_09089.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2259018 2259446 . - . gene_id "RvY_09089"; transcript_id "RvY_09089.2"; Scaffold004 rebuild transcript 2262304 2264487 . + . gene_id "RvY_09090"; transcript_id "RvY_09090.1"; gene_name "RASSF7"; annotation "Ras association domain-containing protein 7"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; KO "K09855"; similar_genes "RASF7_HUMAN(e-value:5.2e-10;bit-score:62.0)"; Scaffold004 rebuild exon 2262304 2262338 . + . gene_id "RvY_09090"; transcript_id "RvY_09090.1"; Scaffold004 rebuild exon 2262539 2263131 . + . gene_id "RvY_09090"; transcript_id "RvY_09090.1"; Scaffold004 rebuild exon 2263218 2263355 . + . gene_id "RvY_09090"; transcript_id "RvY_09090.1"; Scaffold004 rebuild exon 2263574 2264140 . + . gene_id "RvY_09090"; transcript_id "RvY_09090.1"; Scaffold004 rebuild exon 2264324 2264487 . + . gene_id "RvY_09090"; transcript_id "RvY_09090.1"; Scaffold004 rebuild transcript 2264773 2266149 . - . gene_id "RvY_09091"; transcript_id "RvY_09091.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2264773 2264967 . - . gene_id "RvY_09091"; transcript_id "RvY_09091.1"; Scaffold004 rebuild exon 2265856 2266149 . - . gene_id "RvY_09091"; transcript_id "RvY_09091.1"; Scaffold004 rebuild transcript 2266739 2268895 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2266739 2267155 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2267401 2267581 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2267688 2267728 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2267810 2268047 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2268186 2268418 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2268491 2268552 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2268633 2268769 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild exon 2268858 2268895 . - . gene_id "RvY_09092"; transcript_id "RvY_09092.1"; Scaffold004 rebuild transcript 2268950 2270095 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2268950 2269084 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; Scaffold004 rebuild exon 2269145 2269301 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; Scaffold004 rebuild exon 2269366 2269475 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; Scaffold004 rebuild exon 2269548 2269661 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; Scaffold004 rebuild exon 2269760 2269874 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; Scaffold004 rebuild exon 2269959 2270095 . - . gene_id "RvY_09093"; transcript_id "RvY_09093.1"; Scaffold004 rebuild transcript 2270955 2272032 . + . gene_id "RvY_09094"; transcript_id "RvY_09094.1"; annotation "hypothetical protein."; Pfam "[Cid2] Caffeine-induced death protein 2"; Scaffold004 rebuild exon 2270955 2271032 . + . gene_id "RvY_09094"; transcript_id "RvY_09094.1"; Scaffold004 rebuild exon 2271151 2271276 . + . gene_id "RvY_09094"; transcript_id "RvY_09094.1"; Scaffold004 rebuild exon 2271541 2271687 . + . gene_id "RvY_09094"; transcript_id "RvY_09094.1"; Scaffold004 rebuild exon 2271757 2271816 . + . gene_id "RvY_09094"; transcript_id "RvY_09094.1"; Scaffold004 rebuild exon 2271985 2272032 . + . gene_id "RvY_09094"; transcript_id "RvY_09094.1"; Scaffold004 rebuild transcript 2272989 2275553 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; gene_name "SRP1"; annotation "Importin subunit alpha-7"; Pfam "[Arm] Armadillo/beta-catenin-like repeat|[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat|[HEAT] HEAT repeat|[IBB] Importin beta binding domain"; CDD "Karyopherin (importin) alpha [Intracellular trafficking and secretion]"; KO "K15042"; similar_genes "IMA7_BOVIN(e-value:2.3e-80;bit-score:296.0)"; Scaffold004 rebuild exon 2272989 2273105 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2273180 2273278 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2273360 2273453 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2273562 2273653 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2273743 2273874 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2273950 2274038 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2274119 2274218 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2274318 2274481 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2274558 2274768 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2274873 2275000 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2275070 2275242 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild exon 2275366 2275553 . + . gene_id "RvY_09095"; transcript_id "RvY_09095.1"; Scaffold004 rebuild transcript 2276174 2280292 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; gene_name "COG5273"; annotation "putative Probable palmitoyltransferase ZDHHC14"; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDH14_HUMAN(e-value:1.4e-35;bit-score:147.0)"; Scaffold004 rebuild exon 2276174 2276384 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2278702 2278808 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2278892 2279043 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2279109 2279229 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2279297 2279313 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2279461 2279643 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2279715 2279875 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2279954 2280095 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild exon 2280160 2280292 . - . gene_id "RvY_09096"; transcript_id "RvY_09096.1"; Scaffold004 rebuild transcript 2276924 2277141 . + . gene_id "RvY_09097"; transcript_id "RvY_09097.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2276924 2276964 . + . gene_id "RvY_09097"; transcript_id "RvY_09097.1"; Scaffold004 rebuild exon 2277012 2277141 . + . gene_id "RvY_09097"; transcript_id "RvY_09097.1"; Scaffold004 rebuild transcript 2281162 2282283 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; annotation "hypothetical protein."; Pfam "[Acetyltransf_1] Acetyltransferase (GNAT) family|[Acetyltransf_3] Acetyltransferase (GNAT) domain"; Scaffold004 rebuild exon 2281162 2281352 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; Scaffold004 rebuild exon 2281408 2281508 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; Scaffold004 rebuild exon 2281584 2281775 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; Scaffold004 rebuild exon 2281853 2281944 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; Scaffold004 rebuild exon 2282029 2282091 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; Scaffold004 rebuild exon 2282164 2282283 . + . gene_id "RvY_09098"; transcript_id "RvY_09098.1"; Scaffold004 rebuild transcript 2283341 2285488 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; gene_name "KLF6_7"; annotation "putative Krueppel-like factor 6"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09207"; similar_genes "KLF6_MOUSE(e-value:3.0e-44;bit-score:176.0)"; Scaffold004 rebuild exon 2283341 2283373 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; Scaffold004 rebuild exon 2283431 2283504 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; Scaffold004 rebuild exon 2283588 2283689 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; Scaffold004 rebuild exon 2283861 2284021 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; Scaffold004 rebuild exon 2284176 2284492 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; Scaffold004 rebuild exon 2285384 2285488 . - . gene_id "RvY_09099"; transcript_id "RvY_09099.1"; Scaffold004 rebuild transcript 2286485 2287161 . + . gene_id "RvY_09100"; transcript_id "RvY_09100.1"; gene_name "DUF2367"; annotation "hypothetical protein."; Pfam "[DUF2367] Uncharacterized conserved protein (DUF2367)"; CDD "Uncharacterized conserved protein (DUF2367). This is a highly conserved family of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N-terminus. The function is unknown. Several members are putatively assigned as brain protein i3 but this was not validated."; similar_genes "BRI3_MOUSE(e-value:4.7e-13;bit-score:72.0)"; Scaffold004 rebuild exon 2286485 2286620 . + . gene_id "RvY_09100"; transcript_id "RvY_09100.1"; Scaffold004 rebuild exon 2286804 2286943 . + . gene_id "RvY_09100"; transcript_id "RvY_09100.1"; Scaffold004 rebuild exon 2287051 2287161 . + . gene_id "RvY_09100"; transcript_id "RvY_09100.1"; Scaffold004 rebuild transcript 2289904 2298836 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; gene_name "ELF1_2_4"; annotation "putative Ecdysone-induced protein 74EF isoform B"; Pfam "[Ets] Ets-domain"; KO "K09428"; similar_genes "E74EB_DROME(e-value:1.0e-44;bit-score:178.0)"; Scaffold004 rebuild exon 2289904 2290048 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2297392 2297562 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2297631 2297804 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2297866 2298210 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2298271 2298421 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2298481 2298544 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2298614 2298707 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild exon 2298778 2298836 . + . gene_id "RvY_09101"; transcript_id "RvY_09101.1"; Scaffold004 rebuild transcript 2301842 2302565 . - . gene_id "RvY_09102"; transcript_id "RvY_09102.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2301842 2301962 . - . gene_id "RvY_09102"; transcript_id "RvY_09102.1"; Scaffold004 rebuild exon 2302222 2302565 . - . gene_id "RvY_09102"; transcript_id "RvY_09102.1"; Scaffold004 rebuild transcript 2305090 2305937 . + . gene_id "RvY_09103"; transcript_id "RvY_09103.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2305090 2305155 . + . gene_id "RvY_09103"; transcript_id "RvY_09103.1"; Scaffold004 rebuild exon 2305746 2305937 . + . gene_id "RvY_09103"; transcript_id "RvY_09103.1"; Scaffold004 rebuild transcript 2306158 2308600 . - . gene_id "RvY_09104"; transcript_id "RvY_09104.1"; gene_name "U2AF_lg"; annotation "hypothetical protein."; CDD "U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi."; Scaffold004 rebuild exon 2306158 2307083 . - . gene_id "RvY_09104"; transcript_id "RvY_09104.1"; Scaffold004 rebuild exon 2307277 2308080 . - . gene_id "RvY_09104"; transcript_id "RvY_09104.1"; Scaffold004 rebuild exon 2308172 2308252 . - . gene_id "RvY_09104"; transcript_id "RvY_09104.1"; Scaffold004 rebuild exon 2308375 2308600 . - . gene_id "RvY_09104"; transcript_id "RvY_09104.1"; Scaffold004 rebuild transcript 2310092 2315216 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; annotation "hypothetical protein."; Pfam "[HAP1_N] HAP1 N-terminal conserved region"; KO "K15369"; similar_genes "TRAK2_RAT(e-value:7.6e-07;bit-score:52.0)"; Scaffold004 rebuild exon 2310092 2310173 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2311795 2311883 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2311988 2312104 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2312263 2312360 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2312440 2312530 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2312603 2312681 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2312824 2312924 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2312989 2313018 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2313098 2313172 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2313253 2313473 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2313554 2313730 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2314034 2314552 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild exon 2314784 2315216 . + . gene_id "RvY_09105"; transcript_id "RvY_09105.1"; Scaffold004 rebuild transcript 2315825 2318162 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; gene_name "SAM"; annotation "hypothetical protein."; Pfam "[SAM_1] SAM domain (Sterile alpha motif)"; CDD "Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation."; Scaffold004 rebuild exon 2315825 2316278 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2316381 2316449 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2316516 2316883 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2316959 2317082 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2317153 2317368 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2317491 2317717 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2317779 2317853 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild exon 2317938 2318162 . + . gene_id "RvY_09106"; transcript_id "RvY_09106.1"; Scaffold004 rebuild transcript 2319664 2320113 . + . gene_id "RvY_09107"; transcript_id "RvY_09107.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2319664 2320113 . + . gene_id "RvY_09107"; transcript_id "RvY_09107.1"; Scaffold004 rebuild transcript 2320052 2320465 . + . gene_id "RvY_09107"; transcript_id "RvY_09107.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2320052 2320465 . + . gene_id "RvY_09107"; transcript_id "RvY_09107.2"; Scaffold004 rebuild transcript 2322240 2323382 . - . gene_id "RvY_09108"; transcript_id "RvY_09108.1"; gene_name "LETM1"; annotation "hypothetical protein."; Pfam "[LETM1] LETM1-like protein"; CDD "LETM1-like protein. Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans."; Scaffold004 rebuild exon 2322240 2322334 . - . gene_id "RvY_09108"; transcript_id "RvY_09108.1"; Scaffold004 rebuild exon 2322422 2322942 . - . gene_id "RvY_09108"; transcript_id "RvY_09108.1"; Scaffold004 rebuild exon 2323001 2323187 . - . gene_id "RvY_09108"; transcript_id "RvY_09108.1"; Scaffold004 rebuild exon 2323268 2323382 . - . gene_id "RvY_09108"; transcript_id "RvY_09108.1"; Scaffold004 rebuild transcript 2324663 2325553 . + . gene_id "RvY_09109"; transcript_id "RvY_09109.1"; gene_name "Ribosomal_L18_L5e"; annotation "hypothetical protein."; Pfam "[Ribosomal_L18p] Ribosomal L18p/L5e family"; CDD "Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified."; Scaffold004 rebuild exon 2324663 2325042 . + . gene_id "RvY_09109"; transcript_id "RvY_09109.1"; Scaffold004 rebuild exon 2325107 2325338 . + . gene_id "RvY_09109"; transcript_id "RvY_09109.1"; Scaffold004 rebuild exon 2325443 2325553 . + . gene_id "RvY_09109"; transcript_id "RvY_09109.1"; Scaffold004 rebuild transcript 2325588 2328332 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; gene_name "ACTR5"; annotation "actin-related protein 5"; Pfam "[Actin]"; CDD "Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins."; KO "K11672"; similar_genes "ARP5_AEDAE(e-value:4.7e-15;bit-score:79.0)"; Scaffold004 rebuild exon 2325588 2325748 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2325856 2326085 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2326198 2326382 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2326479 2327039 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2327132 2327248 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2327336 2327529 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2327591 2327683 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2327762 2327981 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2328056 2328147 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild exon 2328212 2328332 . - . gene_id "RvY_09110"; transcript_id "RvY_09110.1"; Scaffold004 rebuild transcript 2329712 2333321 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; gene_name "ZYG11"; annotation "Protein zer-1 homolog"; KO "K10350"; similar_genes "ZER1_HUMAN(e-value:2.2e-53;bit-score:206.0)"; Scaffold004 rebuild exon 2329712 2330547 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2330653 2330793 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2330858 2330993 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2331056 2331199 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2331281 2331358 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2331445 2331552 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2331609 2331843 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2331927 2332021 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2332084 2332131 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2332204 2332319 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2332388 2332443 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2332562 2332694 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2332766 2332863 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2332931 2333060 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2333146 2333199 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild exon 2333288 2333321 . + . gene_id "RvY_09111"; transcript_id "RvY_09111.1"; Scaffold004 rebuild transcript 2333952 2335473 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; gene_name "STK19"; annotation "serine/threonine kinase 19 [EC:2.7.11.1]"; Pfam "[Stk19] Serine-threonine protein kinase 19"; EC "EC2.7.11.1"; KO "K08880"; Scaffold004 rebuild exon 2333952 2333994 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2334068 2334153 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2334235 2334391 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2334487 2334577 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2334770 2334812 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2334944 2335085 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2335171 2335276 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild exon 2335356 2335473 . - . gene_id "RvY_09112"; transcript_id "RvY_09112.1"; Scaffold004 rebuild transcript 2337619 2339708 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; gene_name "FIBP"; annotation "hypothetical protein."; Pfam "[FIBP] Acidic fibroblast growth factor binding (FIBP)"; CDD "Acidic fibroblast growth factor binding (FIBP). Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF."; Scaffold004 rebuild exon 2337619 2337700 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2337774 2337972 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2338104 2338230 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2338380 2338480 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2338595 2338782 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2338849 2338942 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2339040 2339103 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2339181 2339267 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2339339 2339439 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild exon 2339567 2339708 . + . gene_id "RvY_09113"; transcript_id "RvY_09113.1"; Scaffold004 rebuild transcript 2340410 2343207 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; gene_name "TFIIA1"; annotation "transcription initiation factor TFIIA large subunit"; Pfam "[TFIIA] Transcription factor IIA, alpha/beta subunit"; KO "K03122"; similar_genes "TF2AA_RAT(e-value:3.1e-12;bit-score:70.0)"; Scaffold004 rebuild exon 2340410 2340456 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2340541 2340601 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2340672 2340767 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2340825 2341210 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2341298 2341621 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2341685 2342012 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2342091 2342297 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2342366 2342470 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild exon 2343190 2343207 . - . gene_id "RvY_09114"; transcript_id "RvY_09114.1"; Scaffold004 rebuild transcript 2344272 2344457 . + . gene_id "RvY_09115"; transcript_id "RvY_09115.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold004 rebuild exon 2344272 2344457 . + . gene_id "RvY_09115"; transcript_id "RvY_09115.1"; Scaffold004 rebuild transcript 2345006 2345440 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2345006 2345188 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.1"; Scaffold004 rebuild exon 2345276 2345440 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.1"; Scaffold004 rebuild transcript 2345101 2345415 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2345101 2345415 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.2"; Scaffold004 rebuild transcript 2345101 2345480 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2345101 2345188 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.3"; Scaffold004 rebuild exon 2345260 2345480 . + . gene_id "RvY_09116"; transcript_id "RvY_09116.3"; Scaffold004 rebuild transcript 2346232 2349424 . + . gene_id "RvY_09117"; transcript_id "RvY_09117.1"; gene_name "DUSP"; annotation "putative Dual specificity protein phosphatase 10"; Pfam "[Rhodanese] Rhodanese-like domain|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower Scaffold004 rebuild exon 2346232 2346475 . + . gene_id "RvY_09117"; transcript_id "RvY_09117.1"; Scaffold004 rebuild exon 2346676 2347161 . + . gene_id "RvY_09117"; transcript_id "RvY_09117.1"; Scaffold004 rebuild exon 2348455 2348811 . + . gene_id "RvY_09117"; transcript_id "RvY_09117.1"; Scaffold004 rebuild exon 2349105 2349424 . + . gene_id "RvY_09117"; transcript_id "RvY_09117.1"; Scaffold004 rebuild transcript 2350780 2353163 . - . gene_id "RvY_09118"; transcript_id "RvY_09118.1"; annotation "hypothetical protein."; Pfam "[COBRA1] Cofactor of BRCA1 (COBRA1)"; KO "K15180"; Scaffold004 rebuild exon 2350780 2350923 . - . gene_id "RvY_09118"; transcript_id "RvY_09118.1"; Scaffold004 rebuild exon 2351009 2352012 . - . gene_id "RvY_09118"; transcript_id "RvY_09118.1"; Scaffold004 rebuild exon 2352299 2352860 . - . gene_id "RvY_09118"; transcript_id "RvY_09118.1"; Scaffold004 rebuild exon 2352930 2353163 . - . gene_id "RvY_09118"; transcript_id "RvY_09118.1"; Scaffold004 rebuild transcript 2354246 2355170 . - . gene_id "RvY_09119"; transcript_id "RvY_09119.1"; gene_name "globin"; annotation "hypothetical protein."; Pfam "[Globin]"; CDD "Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue."; Scaffold004 rebuild exon 2354246 2354521 . - . gene_id "RvY_09119"; transcript_id "RvY_09119.1"; Scaffold004 rebuild exon 2354601 2354685 . - . gene_id "RvY_09119"; transcript_id "RvY_09119.1"; Scaffold004 rebuild exon 2354768 2354845 . - . gene_id "RvY_09119"; transcript_id "RvY_09119.1"; Scaffold004 rebuild exon 2355037 2355170 . - . gene_id "RvY_09119"; transcript_id "RvY_09119.1"; Scaffold004 rebuild transcript 2356414 2356839 . + . gene_id "RvY_09120"; transcript_id "RvY_09120.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2356414 2356637 . + . gene_id "RvY_09120"; transcript_id "RvY_09120.1"; Scaffold004 rebuild exon 2356749 2356839 . + . gene_id "RvY_09120"; transcript_id "RvY_09120.1"; Scaffold004 rebuild transcript 2357008 2360960 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; gene_name "RBM16"; annotation "RNA-binding protein 16"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[CTD_bind] RNA polymerase II-binding domain."; CDD "domain present in proteins, which are involved in regulation of nuclear pre-mRNA."; KO "K13191"; Scaffold004 rebuild exon 2357008 2357180 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2357271 2357293 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2357397 2357453 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2357747 2358301 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2358599 2358913 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2359198 2359605 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2359825 2360289 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild exon 2360602 2360960 . + . gene_id "RvY_09121"; transcript_id "RvY_09121.1"; Scaffold004 rebuild transcript 2362233 2364215 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; similar_genes "MFS11_MACFA(e-value:5.3e-12;bit-score:69.0)"; Scaffold004 rebuild exon 2362233 2362300 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2362378 2362491 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2362558 2362623 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2362824 2362852 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2362925 2363134 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2363213 2363248 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2363315 2363357 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2363441 2363594 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2363705 2363742 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2363827 2363899 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild exon 2364036 2364215 . - . gene_id "RvY_09122"; transcript_id "RvY_09122.1"; Scaffold004 rebuild transcript 2365267 2368421 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; gene_name "PRKAR"; annotation "putative cAMP-dependent protein kinase type I regulatory subunit"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[RIIa] Regulatory subunit of type II PKA R-subunit"; CDD "Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; KO "K04739"; similar_genes "KAPR1_DROME(e-value:8.6e-40;bit-score:161.0)"; Scaffold004 rebuild exon 2365267 2365439 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2365523 2365633 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2365697 2365779 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2365840 2366004 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2366084 2366150 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2366227 2366342 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2366767 2367122 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild exon 2368353 2368421 . - . gene_id "RvY_09123"; transcript_id "RvY_09123.1"; Scaffold004 rebuild transcript 2369979 2377712 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; annotation "hypothetical protein."; Pfam "[Rap_GAP] Rap/ran-GAP"; similar_genes "RGPA2_HUMAN(e-value:3.6e-15;bit-score:79.0)"; Scaffold004 rebuild exon 2369979 2370081 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2370167 2370277 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2370435 2370545 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2370624 2370667 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2370739 2370990 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2371072 2371201 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2371290 2371437 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2371523 2371769 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2371874 2371945 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2372027 2372245 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2372316 2372501 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2372569 2372691 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2372785 2373106 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2373172 2373354 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2373448 2373632 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2373822 2374067 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2374150 2374472 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2374540 2374840 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2374906 2375019 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2375094 2375441 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2375502 2375672 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2375758 2375926 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2375985 2376142 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2376208 2376389 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2376475 2376582 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2376660 2376731 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild exon 2376803 2377712 . + . gene_id "RvY_09124"; transcript_id "RvY_09124.1"; Scaffold004 rebuild transcript 2378404 2380996 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; similar_genes "KLHL8_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold004 rebuild exon 2378404 2378699 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2378799 2379234 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2379303 2379570 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2379640 2379823 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2379904 2380024 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2380123 2380270 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2380449 2380584 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2380670 2380748 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild exon 2380814 2380996 . + . gene_id "RvY_09125"; transcript_id "RvY_09125.1"; Scaffold004 rebuild transcript 2385035 2388890 . + . gene_id "RvY_09126"; transcript_id "RvY_09126.1"; gene_name "VSX2"; annotation "putative Visual system homeobox 1"; Pfam "[OAR]|[Homeobox]"; KO "K09336"; similar_genes "VSX1_DANRE(e-value:3.5e-45;bit-score:179.0)"; Scaffold004 rebuild exon 2385035 2385527 . + . gene_id "RvY_09126"; transcript_id "RvY_09126.1"; Scaffold004 rebuild exon 2386570 2386666 . + . gene_id "RvY_09126"; transcript_id "RvY_09126.1"; Scaffold004 rebuild exon 2386745 2386868 . + . gene_id "RvY_09126"; transcript_id "RvY_09126.1"; Scaffold004 rebuild exon 2388074 2388254 . + . gene_id "RvY_09126"; transcript_id "RvY_09126.1"; Scaffold004 rebuild exon 2388502 2388890 . + . gene_id "RvY_09126"; transcript_id "RvY_09126.1"; Scaffold004 rebuild transcript 2389678 2398512 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain|[EGF] EGF-like domain|[CUB]|[CUB_2] CUB-like domain|[EGF_CA] Calcium-binding EGF domain"; KO "K14616"; similar_genes "CDCP2_MOUSE(e-value:4.7e-13;bit-score:72.0)"; Scaffold004 rebuild exon 2389678 2389817 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2390447 2390573 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2390704 2390811 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2390913 2390996 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2391064 2391102 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2391163 2391264 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2391531 2391634 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2391715 2391996 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2392070 2392227 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2392286 2392420 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2392487 2392690 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2392765 2392907 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2392989 2393092 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2393159 2393289 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2393367 2393435 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2393493 2393806 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2393883 2394189 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2394319 2394503 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2394575 2394937 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2395115 2395640 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2395716 2395832 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2395907 2395947 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2396007 2396208 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2396282 2396626 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2396694 2396797 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2396873 2396950 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2397013 2397214 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2397275 2397634 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2397728 2397924 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2398019 2398212 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2398281 2398351 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild exon 2398418 2398512 . + . gene_id "RvY_09127"; transcript_id "RvY_09127.1"; Scaffold004 rebuild transcript 2401626 2401994 . - . gene_id "RvY_09128"; transcript_id "RvY_09128.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2401626 2401994 . - . gene_id "RvY_09128"; transcript_id "RvY_09128.1"; Scaffold004 rebuild transcript 2402570 2403004 . + . gene_id "RvY_09129"; transcript_id "RvY_09129.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2402570 2402810 . + . gene_id "RvY_09129"; transcript_id "RvY_09129.1"; Scaffold004 rebuild exon 2402898 2403004 . + . gene_id "RvY_09129"; transcript_id "RvY_09129.1"; Scaffold004 rebuild transcript 2403126 2405303 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; annotation "hypothetical protein."; Pfam "[Paf1]"; KO "K15174"; Scaffold004 rebuild exon 2403126 2403343 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2403417 2403477 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2403545 2403635 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2403697 2403831 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2403890 2403997 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2404058 2404161 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2404236 2404304 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2404400 2404508 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2404589 2404681 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2404751 2404826 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2404882 2405006 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2405066 2405167 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild exon 2405248 2405303 . - . gene_id "RvY_09130"; transcript_id "RvY_09130.1"; Scaffold004 rebuild transcript 2406363 2407059 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; Scaffold004 rebuild exon 2406363 2406529 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.1"; Scaffold004 rebuild exon 2406611 2406691 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.1"; Scaffold004 rebuild exon 2406752 2406885 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.1"; Scaffold004 rebuild exon 2406965 2407059 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.1"; Scaffold004 rebuild transcript 2406363 2406695 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.2"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; Scaffold004 rebuild exon 2406363 2406529 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.2"; Scaffold004 rebuild exon 2406611 2406695 . + . gene_id "RvY_09131"; transcript_id "RvY_09131.2"; Scaffold004 rebuild transcript 2408031 2408750 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.1"; gene_name "Macro_Appr_pase_like"; annotation "hypothetical protein."; Pfam "[Macro]"; CDD "Macro domain, Appr-1""-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1""-p (ADP-ribose-1""-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1""-pase, containing conserved putative Scaffold004 rebuild exon 2408031 2408115 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.1"; Scaffold004 rebuild exon 2408179 2408200 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.1"; Scaffold004 rebuild exon 2408269 2408340 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.1"; Scaffold004 rebuild exon 2408428 2408493 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.1"; Scaffold004 rebuild exon 2408576 2408750 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.1"; Scaffold004 rebuild transcript 2407369 2408077 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.2"; gene_name "Macro_Appr_pase_like"; annotation "hypothetical protein."; Pfam "[Macro]"; CDD "Macro domain, Appr-1""-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1""-p (ADP-ribose-1""-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1""-pase, containing conserved putative Scaffold004 rebuild exon 2407369 2407458 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.2"; Scaffold004 rebuild exon 2407521 2407600 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.2"; Scaffold004 rebuild exon 2407661 2407691 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.2"; Scaffold004 rebuild exon 2407784 2407887 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.2"; Scaffold004 rebuild exon 2408035 2408077 . - . gene_id "RvY_09132"; transcript_id "RvY_09132.2"; Scaffold004 rebuild transcript 2407917 2408359 . + . gene_id "RvY_09133"; transcript_id "RvY_09133.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2407917 2408000 . + . gene_id "RvY_09133"; transcript_id "RvY_09133.1"; Scaffold004 rebuild exon 2408285 2408359 . + . gene_id "RvY_09133"; transcript_id "RvY_09133.1"; Scaffold004 rebuild transcript 2409492 2410996 . - . gene_id "RvY_09134"; transcript_id "RvY_09134.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 2409492 2409918 . - . gene_id "RvY_09134"; transcript_id "RvY_09134.1"; Scaffold004 rebuild exon 2410013 2410693 . - . gene_id "RvY_09134"; transcript_id "RvY_09134.1"; Scaffold004 rebuild exon 2410848 2410996 . - . gene_id "RvY_09134"; transcript_id "RvY_09134.1"; Scaffold004 rebuild transcript 2409601 2410653 . - . gene_id "RvY_09134"; transcript_id "RvY_09134.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold004 rebuild exon 2409601 2410653 . - . gene_id "RvY_09134"; transcript_id "RvY_09134.2"; Scaffold004 rebuild transcript 2411562 2413630 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; gene_name "DYNC1LI"; annotation "dynein light intermediate chain 1, cytosolic"; Pfam "[DLIC] Dynein light intermediate chain (DLIC)"; KO "K10416"; similar_genes "DC1L1_DICDI(e-value:2.6e-07;bit-score:53.0)"; Scaffold004 rebuild exon 2411562 2411834 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2411921 2412088 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2412171 2412421 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2412518 2412611 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2412672 2412814 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2412874 2413104 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2413190 2413309 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2413380 2413450 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild exon 2413539 2413630 . - . gene_id "RvY_09135"; transcript_id "RvY_09135.1"; Scaffold004 rebuild transcript 2414282 2415947 . - . gene_id "RvY_09136"; transcript_id "RvY_09136.1"; gene_name "SUGT1"; annotation "suppressor of G2 allele of SKP1"; Pfam "[SGS]|[CS]"; CDD "Suppressor of G2 allele of skp1 and related proteins [General function prediction only]"; KO "K12795"; similar_genes "SUGT1_BOVIN(e-value:1.9e-22;bit-score:104.0)"; Scaffold004 rebuild exon 2414282 2414386 . - . gene_id "RvY_09136"; transcript_id "RvY_09136.1"; Scaffold004 rebuild exon 2414471 2414634 . - . gene_id "RvY_09136"; transcript_id "RvY_09136.1"; Scaffold004 rebuild exon 2414800 2414872 . - . gene_id "RvY_09136"; transcript_id "RvY_09136.1"; Scaffold004 rebuild exon 2415112 2415216 . - . gene_id "RvY_09136"; transcript_id "RvY_09136.1"; Scaffold004 rebuild exon 2415555 2415947 . - . gene_id "RvY_09136"; transcript_id "RvY_09136.1"; Scaffold004 rebuild transcript 2416064 2417893 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; gene_name "DNAJC4"; annotation "DnaJ homolog subfamily C member 4"; Pfam "[DnaJ]"; KO "K09524"; similar_genes "DNJC4_MOUSE(e-value:3.6e-13;bit-score:73.0)"; Scaffold004 rebuild exon 2416064 2416380 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild exon 2416734 2416851 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild exon 2416943 2417005 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild exon 2417133 2417251 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild exon 2417374 2417559 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild exon 2417617 2417703 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild exon 2417776 2417893 . + . gene_id "RvY_09137"; transcript_id "RvY_09137.1"; Scaffold004 rebuild transcript 2418204 2422426 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; gene_name "TY"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand] EF hand|[Kazal_2] Kazal-type serine protease inhibitor domain|[Thyroglobulin_1] Thyroglobulin type-1 repeat|[Kazal_1] Kazal-type serine protease inhibitor domain|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases"; similar_genes "SMOC2_MOUSE(e-value:1.3e-19;bit-score:94.0)"; Scaffold004 rebuild exon 2418204 2418280 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2418384 2418543 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2418630 2418805 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2418891 2419121 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2419183 2419494 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2419625 2419855 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2419933 2420022 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2420116 2420172 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2420249 2420461 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2420567 2420732 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild exon 2422307 2422426 . - . gene_id "RvY_09138"; transcript_id "RvY_09138.1"; Scaffold004 rebuild transcript 2421413 2421616 . + . gene_id "RvY_09139"; transcript_id "RvY_09139.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2421413 2421616 . + . gene_id "RvY_09139"; transcript_id "RvY_09139.1"; Scaffold004 rebuild transcript 2422447 2422773 . + . gene_id "RvY_09140"; transcript_id "RvY_09140.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2422447 2422773 . + . gene_id "RvY_09140"; transcript_id "RvY_09140.1"; Scaffold004 rebuild transcript 2423330 2425650 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; gene_name "eIF-2BD"; annotation "putative Translation initiation factor eIF-2B subunit delta"; Pfam "[IF-2B] Initiation factor 2 subunit family"; CDD "Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative Scaffold004 rebuild exon 2423330 2423352 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2423425 2423527 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2423607 2424100 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2424167 2424281 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2424339 2424415 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2424495 2424597 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2424658 2424788 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2424862 2424953 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2425031 2425116 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2425206 2425386 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild exon 2425469 2425650 . + . gene_id "RvY_09141"; transcript_id "RvY_09141.1"; Scaffold004 rebuild transcript 2425811 2428945 . - . gene_id "RvY_09142"; transcript_id "RvY_09142.1"; gene_name "MAP4K5"; annotation "Mitogen-activated protein kinase kinase kinase kinase 5"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[CNH]"; CDD "Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK)."; EC "EC2.7.11.1"; KO "K08833"; similar_genes "M4K5_HUMAN(e-value:1.0e-116;bit-score:417.0)"; Scaffold004 rebuild exon 2425811 2426478 . - . gene_id "RvY_09142"; transcript_id "RvY_09142.1"; Scaffold004 rebuild exon 2426737 2427273 . - . gene_id "RvY_09142"; transcript_id "RvY_09142.1"; Scaffold004 rebuild exon 2427340 2427801 . - . gene_id "RvY_09142"; transcript_id "RvY_09142.1"; Scaffold004 rebuild exon 2428034 2428350 . - . gene_id "RvY_09142"; transcript_id "RvY_09142.1"; Scaffold004 rebuild exon 2428410 2428945 . - . gene_id "RvY_09142"; transcript_id "RvY_09142.1"; Scaffold004 rebuild transcript 2430786 2434046 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; gene_name "(1,2)PLCc(3)PLCYc"; annotation "(1,2)putative 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4(3)hypothetical protein."; Pfam "(2)[Mcp5_PH] Meiotic cell cortex C-terminal pleckstrin homology|(1,2)[efhand_like] Phosphoinositide-specific phospholipase C, efhand-like|(1,3)[PI-PLC-Y] Phosphatidylinositol-specific phospholipase C, Y domain|(1,2)[PI-PLC-X] Phosphatidylinositol-specific phospholipase C, X domain|(1,3)[C2]"; CDD "(1,2)Phospholipase C, catalytic domain; Phosphoinositide-specific phospholipases C catalyze hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to D-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). Both products function as second messengers in eukaryotic signal transduction cascades. 1,4,5-IP3 triggers inflow of calcium from intracellular stores; the membrane resident product DAG controls cellular protein phosphorylation states by activating various protein kinase C isozymes. The enzyme comprises 2 regions (X and Y) connected via a linker which may contain inserted domains, X and Y together form a TIM barrel-like structure containing the Scaffold004 rebuild exon 2430786 2431075 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2431154 2431292 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2431352 2431572 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2431645 2431779 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2431868 2432365 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2432434 2432475 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2432536 2432579 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2432654 2432771 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2432834 2432927 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2433040 2433103 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2433207 2433331 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2433567 2433751 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild exon 2433821 2434046 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.1"; Scaffold004 rebuild transcript 2431797 2435356 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; gene_name "(1,2)PLCc(3)PLCYc"; annotation "(1,2)putative 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4(3)hypothetical protein."; Pfam "(2)[Mcp5_PH] Meiotic cell cortex C-terminal pleckstrin homology|(1,2)[efhand_like] Phosphoinositide-specific phospholipase C, efhand-like|(1,3)[PI-PLC-Y] Phosphatidylinositol-specific phospholipase C, Y domain|(1,2)[PI-PLC-X] Phosphatidylinositol-specific phospholipase C, X domain|(1,3)[C2]"; CDD "(1,2)Phospholipase C, catalytic domain; Phosphoinositide-specific phospholipases C catalyze hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to D-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). Both products function as second messengers in eukaryotic signal transduction cascades. 1,4,5-IP3 triggers inflow of calcium from intracellular stores; the membrane resident product DAG controls cellular protein phosphorylation states by activating various protein kinase C isozymes. The enzyme comprises 2 regions (X and Y) connected via a linker which may contain inserted domains, X and Y together form a TIM barrel-like structure containing the Scaffold004 rebuild exon 2431797 2432365 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2432434 2432475 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2432536 2432579 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2432654 2432771 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2432834 2432927 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2433040 2433103 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2433207 2433331 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2433567 2433751 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2433821 2434024 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2434096 2434245 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2434934 2435143 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild exon 2435266 2435356 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.2"; Scaffold004 rebuild transcript 2429931 2431744 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; gene_name "(1,2)PLCc(3)PLCYc"; annotation "(1,2)putative 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4(3)hypothetical protein."; Pfam "(2)[Mcp5_PH] Meiotic cell cortex C-terminal pleckstrin homology|(1,2)[efhand_like] Phosphoinositide-specific phospholipase C, efhand-like|(1,3)[PI-PLC-Y] Phosphatidylinositol-specific phospholipase C, Y domain|(1,2)[PI-PLC-X] Phosphatidylinositol-specific phospholipase C, X domain|(1,3)[C2]"; CDD "(1,2)Phospholipase C, catalytic domain; Phosphoinositide-specific phospholipases C catalyze hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to D-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). Both products function as second messengers in eukaryotic signal transduction cascades. 1,4,5-IP3 triggers inflow of calcium from intracellular stores; the membrane resident product DAG controls cellular protein phosphorylation states by activating various protein kinase C isozymes. The enzyme comprises 2 regions (X and Y) connected via a linker which may contain inserted domains, X and Y together form a TIM barrel-like structure containing the Scaffold004 rebuild exon 2429931 2430215 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild exon 2430288 2430548 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild exon 2430642 2430746 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild exon 2430834 2431075 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild exon 2431154 2431292 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild exon 2431352 2431572 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild exon 2431645 2431744 . - . gene_id "RvY_09143"; transcript_id "RvY_09143.3"; Scaffold004 rebuild transcript 2436102 2437080 . + . gene_id "RvY_09144"; transcript_id "RvY_09144.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2436102 2436177 . + . gene_id "RvY_09144"; transcript_id "RvY_09144.1"; Scaffold004 rebuild exon 2436890 2437080 . + . gene_id "RvY_09144"; transcript_id "RvY_09144.1"; Scaffold004 rebuild transcript 2437748 2439919 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; gene_name "CHAF1A"; annotation "chromatin assembly factor 1 subunit A"; Pfam "[CAF1A] Chromatin assembly factor 1 subunit A"; KO "K10750"; similar_genes "CAF1A_MOUSE(e-value:1.4e-14;bit-score:78.0)"; Scaffold004 rebuild exon 2437748 2437988 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2438057 2438318 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2438450 2438696 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2438785 2438871 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2438937 2439035 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2439170 2439427 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2439487 2439615 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2439684 2439764 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild exon 2439836 2439919 . - . gene_id "RvY_09145"; transcript_id "RvY_09145.1"; Scaffold004 rebuild transcript 2441059 2443069 . - . gene_id "RvY_09146"; transcript_id "RvY_09146.1"; gene_name "CLK"; annotation "Serine/threonine-protein kinase Doa"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.12.1"; KO "K08823"; similar_genes "DOA_DROME(e-value:2.8e-53;bit-score:206.0)"; Scaffold004 rebuild exon 2441059 2441301 . - . gene_id "RvY_09146"; transcript_id "RvY_09146.1"; Scaffold004 rebuild exon 2441372 2441501 . - . gene_id "RvY_09146"; transcript_id "RvY_09146.1"; Scaffold004 rebuild exon 2441604 2441724 . - . gene_id "RvY_09146"; transcript_id "RvY_09146.1"; Scaffold004 rebuild exon 2441834 2442444 . - . gene_id "RvY_09146"; transcript_id "RvY_09146.1"; Scaffold004 rebuild exon 2442522 2443069 . - . gene_id "RvY_09146"; transcript_id "RvY_09146.1"; Scaffold004 rebuild transcript 2442909 2443633 . + . gene_id "RvY_09147"; transcript_id "RvY_09147.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2442909 2442962 . + . gene_id "RvY_09147"; transcript_id "RvY_09147.1"; Scaffold004 rebuild exon 2443559 2443633 . + . gene_id "RvY_09147"; transcript_id "RvY_09147.1"; Scaffold004 rebuild transcript 2443604 2443903 . - . gene_id "RvY_09148"; transcript_id "RvY_09148.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2443604 2443903 . - . gene_id "RvY_09148"; transcript_id "RvY_09148.1"; Scaffold004 rebuild transcript 2444080 2446196 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; annotation "Transmembrane protein 184A"; Pfam "[Solute_trans_a] Organic solute transporter Ostalpha"; similar_genes "T184A_BOVIN(e-value:7.6e-94;bit-score:341.0)"; Scaffold004 rebuild exon 2444080 2444361 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2444418 2444583 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2444654 2444744 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2444855 2444930 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2445018 2445109 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2445196 2445365 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2445452 2445627 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2445693 2445796 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2445881 2446032 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild exon 2446090 2446196 . + . gene_id "RvY_09149"; transcript_id "RvY_09149.1"; Scaffold004 rebuild transcript 2448072 2448332 . + . gene_id "RvY_09150"; transcript_id "RvY_09150.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2448072 2448332 . + . gene_id "RvY_09150"; transcript_id "RvY_09150.1"; Scaffold004 rebuild transcript 2449200 2450742 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; gene_name "K00787"; annotation "putative Farnesyl pyrophosphate synthase"; Pfam "[polyprenyl_synt] Polyprenyl synthetase"; EC "EC2.5.1.1"; KO "K00787"; similar_genes "FPPS_BOVIN(e-value:5.0e-40;bit-score:162.0)"; Scaffold004 rebuild exon 2449200 2449331 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild exon 2449415 2449555 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild exon 2449659 2449739 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild exon 2449848 2449970 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild exon 2450026 2450190 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild exon 2450261 2450473 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild exon 2450542 2450742 . + . gene_id "RvY_09151"; transcript_id "RvY_09151.1"; Scaffold004 rebuild transcript 2450799 2454429 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; gene_name "COG5177"; annotation "putative Pre-rRNA-processing protein TSR1 homolog"; Pfam "[AARP2CN] AARP2CN (NUC121) domain|[DUF663]"; CDD "Uncharacterized conserved protein [Function unknown]"; KO "K14799"; similar_genes "TSR1_HUMAN(e-value:4.4e-39;bit-score:159.0)"; Scaffold004 rebuild exon 2450799 2450923 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2451033 2451107 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2451201 2451341 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2451412 2451514 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2451583 2451834 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2451892 2452033 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2452105 2452197 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2452267 2452573 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2452651 2452792 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2452918 2453052 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2453133 2453289 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2453371 2453441 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2453507 2453720 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2453782 2453996 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2454148 2454221 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild exon 2454327 2454429 . - . gene_id "RvY_09152"; transcript_id "RvY_09152.1"; Scaffold004 rebuild transcript 2455311 2456699 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; gene_name "UBE2R"; annotation "Ubiquitin-conjugating enzyme E2 R1"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K02207"; similar_genes "UB2R1_HUMAN(e-value:1.7e-78;bit-score:290.0)"; Scaffold004 rebuild exon 2455311 2455409 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild exon 2455595 2455685 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild exon 2455773 2455809 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild exon 2455878 2456000 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild exon 2456100 2456227 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild exon 2456302 2456381 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild exon 2456442 2456699 . + . gene_id "RvY_09153"; transcript_id "RvY_09153.1"; Scaffold004 rebuild transcript 2457169 2457429 . - . gene_id "RvY_09154"; transcript_id "RvY_09154.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2457169 2457429 . - . gene_id "RvY_09154"; transcript_id "RvY_09154.1"; Scaffold004 rebuild transcript 2459726 2463349 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; gene_name "COG2133"; annotation "hypothetical protein."; Pfam "[GSDH] Glucose / Sorbosone dehydrogenase"; CDD "Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]"; Scaffold004 rebuild exon 2459726 2459981 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2460150 2460225 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2460303 2460381 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2461626 2461727 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2461892 2462057 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2462130 2462195 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2462479 2462549 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2462633 2462705 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2462801 2462909 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild exon 2463001 2463349 . + . gene_id "RvY_09155"; transcript_id "RvY_09155.1"; Scaffold004 rebuild transcript 2463626 2465065 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2463626 2463633 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; Scaffold004 rebuild exon 2463708 2464302 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; Scaffold004 rebuild exon 2464390 2464531 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; Scaffold004 rebuild exon 2464612 2464772 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; Scaffold004 rebuild exon 2464855 2464920 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; Scaffold004 rebuild exon 2465027 2465065 . - . gene_id "RvY_09156"; transcript_id "RvY_09156.1"; Scaffold004 rebuild transcript 2465817 2467169 . - . gene_id "RvY_09157"; transcript_id "RvY_09157.1"; annotation "hypothetical protein."; Pfam "[SIN1] Stress-activated map kinase interacting protein 1 (SIN1)"; Scaffold004 rebuild exon 2465817 2465862 . - . gene_id "RvY_09157"; transcript_id "RvY_09157.1"; Scaffold004 rebuild exon 2465938 2466548 . - . gene_id "RvY_09157"; transcript_id "RvY_09157.1"; Scaffold004 rebuild exon 2466613 2467072 . - . gene_id "RvY_09157"; transcript_id "RvY_09157.1"; Scaffold004 rebuild exon 2467144 2467169 . - . gene_id "RvY_09157"; transcript_id "RvY_09157.1"; Scaffold004 rebuild transcript 2467727 2469397 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; gene_name "ALG5"; annotation "putative Dolichyl-phosphate beta-glucosyltransferase"; Pfam "[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2"; CDD "DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate."; EC "EC2.4.1.117"; KO "K00729"; similar_genes "ALG5_HUMAN(e-value:1.7e-40;bit-score:164.0)"; Scaffold004 rebuild exon 2467727 2467804 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2467878 2468055 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2468140 2468255 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2468376 2468468 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2468557 2468718 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2468795 2468946 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2469082 2469167 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild exon 2469246 2469397 . + . gene_id "RvY_09158"; transcript_id "RvY_09158.1"; Scaffold004 rebuild transcript 2468651 2468935 . - . gene_id "RvY_09159"; transcript_id "RvY_09159.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2468651 2468746 . - . gene_id "RvY_09159"; transcript_id "RvY_09159.1"; Scaffold004 rebuild exon 2468834 2468935 . - . gene_id "RvY_09159"; transcript_id "RvY_09159.1"; Scaffold004 rebuild transcript 2470070 2472521 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; gene_name "SAM"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; CDD "Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization."; similar_genes "STIM1_HUMAN(e-value:3.1e-12;bit-score:70.0)"; Scaffold004 rebuild exon 2470070 2470700 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2470775 2470875 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2470942 2471212 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2471339 2471516 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2471600 2471715 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2471778 2471836 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2471896 2471925 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2472014 2472154 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2472230 2472384 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild exon 2472467 2472521 . - . gene_id "RvY_09160"; transcript_id "RvY_09160.1"; Scaffold004 rebuild transcript 2473042 2476536 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; annotation "hypothetical protein."; Pfam "[HRD] Hpc2-related domain|[UBN_AB] Ubinuclein conserved middle domain"; Scaffold004 rebuild exon 2473042 2473266 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2473340 2473426 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2473506 2473583 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2473657 2474360 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2474538 2474707 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2474794 2474857 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2474954 2475148 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2475290 2475783 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2475943 2476332 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild exon 2476427 2476536 . + . gene_id "RvY_09161"; transcript_id "RvY_09161.1"; Scaffold004 rebuild transcript 2477074 2482173 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; gene_name "alpha_CARP_X_XI_like"; annotation "hypothetical protein."; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors."; Scaffold004 rebuild exon 2477074 2477096 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2477172 2477217 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2477288 2477358 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2477430 2477493 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2477590 2477651 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2477731 2477823 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2477908 2478073 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2478135 2478341 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2478417 2478553 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2481667 2481717 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild exon 2482116 2482173 . - . gene_id "RvY_09162"; transcript_id "RvY_09162.1"; Scaffold004 rebuild transcript 2482760 2484282 . - . gene_id "RvY_09163"; transcript_id "RvY_09163.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2482760 2482871 . - . gene_id "RvY_09163"; transcript_id "RvY_09163.1"; Scaffold004 rebuild exon 2482948 2483316 . - . gene_id "RvY_09163"; transcript_id "RvY_09163.1"; Scaffold004 rebuild exon 2483383 2484030 . - . gene_id "RvY_09163"; transcript_id "RvY_09163.1"; Scaffold004 rebuild exon 2484110 2484282 . - . gene_id "RvY_09163"; transcript_id "RvY_09163.1"; Scaffold004 rebuild transcript 2484889 2486548 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_16] Putative methyltransferase"; similar_genes "FA86A_HUMAN(e-value:4.4e-07;bit-score:53.0)"; Scaffold004 rebuild exon 2484889 2485026 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild exon 2485145 2485483 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild exon 2485587 2485720 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild exon 2485796 2485896 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild exon 2485971 2486108 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild exon 2486193 2486336 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild exon 2486430 2486548 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.1"; Scaffold004 rebuild transcript 2484889 2486548 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; annotation "hypothetical protein."; Pfam "[Methyltransf_16] Putative methyltransferase"; similar_genes "FA86A_HUMAN(e-value:4.4e-07;bit-score:53.0)"; Scaffold004 rebuild exon 2484889 2485026 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2485145 2485309 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2485373 2485483 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2485587 2485720 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2485796 2485896 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2485971 2486108 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2486193 2486336 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild exon 2486430 2486548 . + . gene_id "RvY_09164"; transcript_id "RvY_09164.2"; Scaffold004 rebuild transcript 2486682 2489700 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; gene_name "PBP1_GABAb_receptor"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example."; similar_genes "(1)GABR2_RAT(e-value:1.4e-10;bit-score:64.0)"; Scaffold004 rebuild exon 2486682 2487500 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2487553 2487831 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2487908 2488160 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2488239 2488354 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2488442 2488894 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2488992 2489255 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2489350 2489628 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild exon 2489692 2489700 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.1"; Scaffold004 rebuild transcript 2487532 2489700 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; gene_name "PBP1_GABAb_receptor"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example."; similar_genes "(1)GABR2_RAT(e-value:1.4e-10;bit-score:64.0)"; Scaffold004 rebuild exon 2487532 2487831 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2487908 2488160 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2488239 2488354 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2488442 2488479 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2488549 2488894 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2488992 2489255 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2489350 2489628 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild exon 2489692 2489700 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.2"; Scaffold004 rebuild transcript 2487532 2489273 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.3"; gene_name "PBP1_GABAb_receptor"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; CDD "Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example."; similar_genes "(1)GABR2_RAT(e-value:1.4e-10;bit-score:64.0)"; Scaffold004 rebuild exon 2487532 2487831 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.3"; Scaffold004 rebuild exon 2487908 2488354 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.3"; Scaffold004 rebuild exon 2488442 2488479 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.3"; Scaffold004 rebuild exon 2488549 2488894 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.3"; Scaffold004 rebuild exon 2488992 2489273 . - . gene_id "RvY_09165"; transcript_id "RvY_09165.3"; Scaffold004 rebuild transcript 2494037 2498354 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; annotation "hypothetical protein."; Pfam "[DUF2146] Uncharacterized conserved protein (DUF2146)"; Scaffold004 rebuild exon 2494037 2494181 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2494248 2494439 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2494558 2494616 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2494741 2494871 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2494964 2495098 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2495208 2495327 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2495394 2495643 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2495713 2495865 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2495951 2496103 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2496167 2496361 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2496422 2496686 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2496813 2496889 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2497090 2497219 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2497328 2497395 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2497490 2497573 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2497740 2497859 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2497942 2497989 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2498059 2498197 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild exon 2498290 2498354 . - . gene_id "RvY_09166"; transcript_id "RvY_09166.1"; Scaffold004 rebuild transcript 2498831 2501067 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; gene_name "SCLY"; annotation "selenocysteine lyase [EC:4.4.1.16]"; Pfam "[Aminotran_5] Aminotransferase class-V"; CDD "Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]"; EC "EC4.4.1.16"; KO "K01763"; similar_genes "SCLY_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold004 rebuild exon 2498831 2498925 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499026 2499129 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499198 2499269 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499327 2499497 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499574 2499683 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499752 2499766 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499840 2499923 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2499993 2500073 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2500162 2500271 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2500333 2500369 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2500445 2500528 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2500601 2500767 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2500841 2500934 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild exon 2500996 2501067 . + . gene_id "RvY_09167"; transcript_id "RvY_09167.1"; Scaffold004 rebuild transcript 2501095 2503041 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2501095 2501210 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2501324 2501573 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2501632 2501675 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2501754 2501832 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2501900 2501968 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2502031 2502150 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2502238 2502361 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2502442 2502520 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2502596 2502683 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2502745 2502837 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild exon 2502961 2503041 . - . gene_id "RvY_09168"; transcript_id "RvY_09168.1"; Scaffold004 rebuild transcript 2503803 2511245 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 2503803 2503895 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2503956 2504105 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2504224 2504393 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2504452 2504859 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2504949 2506022 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2506166 2506260 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2506340 2506416 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2506528 2506923 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2507004 2507246 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2507333 2507561 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2507647 2507917 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2507987 2508282 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2508358 2508467 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2508559 2508595 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2508745 2508884 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2508950 2509045 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2509387 2509546 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2509732 2509949 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2510015 2510179 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2510294 2510425 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild exon 2510523 2511245 . - . gene_id "RvY_09169"; transcript_id "RvY_09169.1"; Scaffold004 rebuild transcript 2514083 2525254 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; gene_name "AGRN"; annotation "agrin"; Pfam "[Laminin_G_2] Laminin G domain|[Kazal_2] Kazal-type serine protease inhibitor domain|[NtA] Agrin NtA domain|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[EGF] EGF-like domain|[Kazal_1] Kazal-type serine protease inhibitor domain|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules."; KO "K06254"; similar_genes "AGRIN_HUMAN(e-value:1.8e-10;bit-score:64.0)"; Scaffold004 rebuild exon 2514083 2514539 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2516202 2516240 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2516351 2516428 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2518145 2518281 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2518488 2518602 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2519151 2519245 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2519469 2519516 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2519597 2519663 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2519953 2520312 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2520472 2520630 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2520756 2520872 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2520950 2521055 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2521264 2521319 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2521403 2521462 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2521532 2521618 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2521702 2521947 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2522143 2522271 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2522449 2522592 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2522722 2523712 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2523832 2523943 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2524050 2524359 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2524433 2524526 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2524614 2524847 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2524912 2525012 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild exon 2525091 2525254 . + . gene_id "RvY_09170"; transcript_id "RvY_09170.1"; Scaffold004 rebuild transcript 2525664 2526368 . - . gene_id "RvY_09171"; transcript_id "RvY_09171.1"; annotation "hypothetical protein."; Pfam "[DUF778]"; similar_genes "TM222_HUMAN(e-value:2.0e-24;bit-score:110.0)"; Scaffold004 rebuild exon 2525664 2525742 . - . gene_id "RvY_09171"; transcript_id "RvY_09171.1"; Scaffold004 rebuild exon 2525811 2525941 . - . gene_id "RvY_09171"; transcript_id "RvY_09171.1"; Scaffold004 rebuild exon 2526082 2526207 . - . gene_id "RvY_09171"; transcript_id "RvY_09171.1"; Scaffold004 rebuild exon 2526309 2526368 . - . gene_id "RvY_09171"; transcript_id "RvY_09171.1"; Scaffold004 rebuild transcript 2526705 2527007 . - . gene_id "RvY_09172"; transcript_id "RvY_09172.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2526705 2527007 . - . gene_id "RvY_09172"; transcript_id "RvY_09172.1"; Scaffold004 rebuild transcript 2527632 2528030 . + . gene_id "RvY_09173"; transcript_id "RvY_09173.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2527632 2528030 . + . gene_id "RvY_09173"; transcript_id "RvY_09173.1"; Scaffold004 rebuild transcript 2528075 2532497 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; annotation "hypothetical protein."; Pfam "[Xpo1] Exportin 1-like protein"; KO "K15436"; Scaffold004 rebuild exon 2528075 2528200 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2528288 2528377 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2528521 2528634 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2528739 2528812 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2528911 2528974 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2529033 2529125 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2529205 2529354 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2529429 2529503 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2529569 2529672 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2529734 2529872 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2529950 2530099 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2530165 2530272 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2530365 2530456 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2530538 2530677 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2530794 2531218 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2531285 2531542 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2531614 2531708 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2531774 2531924 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2532008 2532187 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2532249 2532361 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild exon 2532434 2532497 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.1"; Scaffold004 rebuild transcript 2528075 2532365 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; annotation "hypothetical protein."; Pfam "[Xpo1] Exportin 1-like protein"; KO "K15436"; Scaffold004 rebuild exon 2528075 2528200 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2528288 2528377 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2528521 2528634 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2528739 2528812 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2528911 2528974 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2529033 2529125 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2529205 2529354 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2529429 2529503 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2529569 2529672 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2529734 2529872 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2529950 2530099 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2530165 2530272 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2530365 2530456 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2530538 2530677 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2530794 2531218 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2531285 2531542 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2531614 2531708 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2531774 2531924 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2532008 2532187 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild exon 2532249 2532365 . + . gene_id "RvY_09174"; transcript_id "RvY_09174.2"; Scaffold004 rebuild transcript 2532959 2537034 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; gene_name "CUGBP"; annotation "putative CUG-BP- and ETR-3-like factor 3"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RNA_bind] RNA binding domain|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076)."; KO "K13207"; similar_genes "CELF3_DANRE(e-value:1.9e-35;bit-score:147.0)"; Scaffold004 rebuild exon 2532959 2533086 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2533171 2533314 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2533399 2533449 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2533514 2533651 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2533718 2533870 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2533956 2534054 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2534168 2534225 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2534500 2534637 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2534865 2534944 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2535100 2535274 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2535339 2535421 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2536741 2536851 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild exon 2536923 2537034 . - . gene_id "RvY_09175"; transcript_id "RvY_09175.1"; Scaffold004 rebuild transcript 2540473 2544939 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; gene_name "SNc"; annotation "hypothetical protein."; Pfam "[TUDOR] Tudor domain|[SNase] Staphylococcal nuclease homologue"; CDD "Staphylococcal nuclease homologues."; similar_genes "SND1_DANRE(e-value:9.2e-14;bit-score:75.0)"; Scaffold004 rebuild exon 2540473 2540541 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2540606 2540740 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2540834 2540957 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2541114 2541362 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2541447 2541541 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2541610 2541665 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2541734 2541830 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2541898 2542004 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2542084 2542174 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2542243 2542334 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2542443 2542566 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2542628 2542903 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2542974 2543112 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2543175 2543287 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2543358 2543549 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2543791 2543941 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2543996 2544192 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2544268 2544378 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2544469 2544660 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2544737 2544781 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild exon 2544871 2544939 . + . gene_id "RvY_09176"; transcript_id "RvY_09176.1"; Scaffold004 rebuild transcript 2547153 2547845 . + . gene_id "RvY_09177"; transcript_id "RvY_09177.1"; gene_name "ASCL"; annotation "achaete-scute complex protein"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; KO "K09067"; similar_genes "ASCL1_RAT(e-value:6.4e-19;bit-score:92.0)"; Scaffold004 rebuild exon 2547153 2547845 . + . gene_id "RvY_09177"; transcript_id "RvY_09177.1"; Scaffold004 rebuild transcript 2548185 2548948 . - . gene_id "RvY_09178"; transcript_id "RvY_09178.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2548185 2548404 . - . gene_id "RvY_09178"; transcript_id "RvY_09178.1"; Scaffold004 rebuild exon 2548926 2548948 . - . gene_id "RvY_09178"; transcript_id "RvY_09178.1"; Scaffold004 rebuild transcript 2554096 2554257 . + . gene_id "RvY_09179"; transcript_id "RvY_09179.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2554096 2554257 . + . gene_id "RvY_09179"; transcript_id "RvY_09179.1"; Scaffold004 rebuild transcript 2554970 2555596 . - . gene_id "RvY_09180"; transcript_id "RvY_09180.1"; gene_name "ASCL"; annotation "achaete-scute complex protein"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; KO "K09067"; similar_genes "ASCL5_HUMAN(e-value:1.2e-13;bit-score:74.0)"; Scaffold004 rebuild exon 2554970 2555596 . - . gene_id "RvY_09180"; transcript_id "RvY_09180.1"; Scaffold004 rebuild transcript 2556274 2559553 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; gene_name "CNGA3"; annotation "Cyclic nucleotide-gated cation channel alpha-3"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases."; KO "K04950"; similar_genes "CNGA3_MOUSE(e-value:3.1e-63;bit-score:239.0)"; Scaffold004 rebuild exon 2556274 2556726 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2556796 2556876 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2556938 2557080 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2557172 2557247 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2557304 2557346 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2557403 2557479 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2557541 2557605 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2557717 2557742 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2557805 2557907 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2558000 2558102 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2558170 2558464 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2558531 2558604 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2558687 2558783 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2558884 2559044 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2559117 2559365 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild exon 2559452 2559553 . - . gene_id "RvY_09181"; transcript_id "RvY_09181.1"; Scaffold004 rebuild transcript 2560099 2560452 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.1"; gene_name "PKc_MKK3_6"; annotation "hypothetical protein."; CDD "Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma."; Scaffold004 rebuild exon 2560099 2560222 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.1"; Scaffold004 rebuild exon 2560310 2560452 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.1"; Scaffold004 rebuild transcript 2560099 2560452 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.2"; gene_name "PKc_MKK3_6"; annotation "hypothetical protein."; CDD "Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma."; Scaffold004 rebuild exon 2560099 2560222 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.2"; Scaffold004 rebuild exon 2560310 2560371 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.2"; Scaffold004 rebuild exon 2560432 2560452 . - . gene_id "RvY_09182"; transcript_id "RvY_09182.2"; Scaffold004 rebuild transcript 2560973 2562472 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; gene_name "PKc_MKK4"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic."; EC "EC2.7.12.2"; similar_genes "MP2K4_HUMAN(e-value:2.5e-22;bit-score:103.0)"; Scaffold004 rebuild exon 2560973 2561035 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2561114 2561228 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2561306 2561370 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2561440 2561513 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2561576 2561618 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2561677 2561742 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2561799 2561855 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2562084 2562258 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2562320 2562392 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild exon 2562466 2562472 . - . gene_id "RvY_09183"; transcript_id "RvY_09183.1"; Scaffold004 rebuild transcript 2563790 2564646 . - . gene_id "RvY_09184"; transcript_id "RvY_09184.1"; gene_name "Tyr_3_monoox"; annotation "Tyrosine 3-monooxygenase"; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria."; EC "EC1.14.16.2"; similar_genes "TY3H_ANGAN(e-value:5.0e-57;bit-score:219.0)"; Scaffold004 rebuild exon 2563790 2563964 . - . gene_id "RvY_09184"; transcript_id "RvY_09184.1"; Scaffold004 rebuild exon 2564058 2564169 . - . gene_id "RvY_09184"; transcript_id "RvY_09184.1"; Scaffold004 rebuild exon 2564236 2564353 . - . gene_id "RvY_09184"; transcript_id "RvY_09184.1"; Scaffold004 rebuild exon 2564439 2564565 . - . gene_id "RvY_09184"; transcript_id "RvY_09184.1"; Scaffold004 rebuild exon 2564630 2564646 . - . gene_id "RvY_09184"; transcript_id "RvY_09184.1"; Scaffold004 rebuild transcript 2564916 2566304 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.1"; gene_name "Tyr_3_monoox"; annotation "(1)putative Tyrosine 3-monooxygenase(2)hypothetical protein."; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria."; EC "EC1.14.16.2"; similar_genes "(1)TY3H_MOUSE(e-value:2.8e-36;bit-score:150.0)(2)TY3H_MOUSE(e-value:5.5e-16;bit-score:82.0)"; Scaffold004 rebuild exon 2564916 2565123 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.1"; Scaffold004 rebuild exon 2565248 2565315 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.1"; Scaffold004 rebuild exon 2565393 2565665 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.1"; Scaffold004 rebuild exon 2565990 2566304 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.1"; Scaffold004 rebuild transcript 2565244 2566468 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.2"; gene_name "Tyr_3_monoox"; annotation "(1)putative Tyrosine 3-monooxygenase(2)hypothetical protein."; Pfam "[Biopterin_H] Biopterin-dependent aromatic amino acid hydroxylase"; CDD "tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria."; EC "EC1.14.16.2"; similar_genes "(1)TY3H_MOUSE(e-value:2.8e-36;bit-score:150.0)(2)TY3H_MOUSE(e-value:5.5e-16;bit-score:82.0)"; Scaffold004 rebuild exon 2565244 2565315 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.2"; Scaffold004 rebuild exon 2565393 2565665 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.2"; Scaffold004 rebuild exon 2565990 2566286 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.2"; Scaffold004 rebuild exon 2566391 2566468 . - . gene_id "RvY_09185"; transcript_id "RvY_09185.2"; Scaffold004 rebuild transcript 2567841 2569074 . - . gene_id "RvY_09186"; transcript_id "RvY_09186.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2567841 2568161 . - . gene_id "RvY_09186"; transcript_id "RvY_09186.1"; Scaffold004 rebuild exon 2568225 2568487 . - . gene_id "RvY_09186"; transcript_id "RvY_09186.1"; Scaffold004 rebuild exon 2568622 2568738 . - . gene_id "RvY_09186"; transcript_id "RvY_09186.1"; Scaffold004 rebuild exon 2568813 2569074 . - . gene_id "RvY_09186"; transcript_id "RvY_09186.1"; Scaffold004 rebuild transcript 2571234 2573080 . + . gene_id "RvY_09187"; transcript_id "RvY_09187.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2571234 2571327 . + . gene_id "RvY_09187"; transcript_id "RvY_09187.1"; Scaffold004 rebuild exon 2572536 2572623 . + . gene_id "RvY_09187"; transcript_id "RvY_09187.1"; Scaffold004 rebuild exon 2572701 2572746 . + . gene_id "RvY_09187"; transcript_id "RvY_09187.1"; Scaffold004 rebuild exon 2572815 2572865 . + . gene_id "RvY_09187"; transcript_id "RvY_09187.1"; Scaffold004 rebuild exon 2573042 2573080 . + . gene_id "RvY_09187"; transcript_id "RvY_09187.1"; Scaffold004 rebuild transcript 2573671 2574018 . + . gene_id "RvY_09188"; transcript_id "RvY_09188.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2573671 2574018 . + . gene_id "RvY_09188"; transcript_id "RvY_09188.1"; Scaffold004 rebuild transcript 2574378 2574587 . + . gene_id "RvY_09189"; transcript_id "RvY_09189.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2574378 2574587 . + . gene_id "RvY_09189"; transcript_id "RvY_09189.1"; Scaffold004 rebuild transcript 2574868 2578117 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; gene_name "(1)NMUR2"; annotation "(1)neuromedin U receptor 2(2,3)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "(1)K05053"; similar_genes "(1)NMUR1_RAT(e-value:9.1e-12;bit-score:68.0)"; Scaffold004 rebuild exon 2574868 2575274 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild exon 2575472 2575615 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild exon 2575828 2576235 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild exon 2576316 2576369 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild exon 2576455 2576509 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild exon 2576596 2576636 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild exon 2577844 2578117 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.1"; Scaffold004 rebuild transcript 2574868 2576071 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.2"; gene_name "(1)NMUR2"; annotation "(1)neuromedin U receptor 2(2,3)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "(1)K05053"; similar_genes "(1)NMUR1_RAT(e-value:9.1e-12;bit-score:68.0)"; Scaffold004 rebuild exon 2574868 2575274 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.2"; Scaffold004 rebuild exon 2575472 2575615 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.2"; Scaffold004 rebuild exon 2575828 2576071 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.2"; Scaffold004 rebuild transcript 2575724 2576703 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.3"; gene_name "(1)NMUR2"; annotation "(1)neuromedin U receptor 2(2,3)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "(1)K05053"; similar_genes "(1)NMUR1_RAT(e-value:9.1e-12;bit-score:68.0)"; Scaffold004 rebuild exon 2575724 2576235 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.3"; Scaffold004 rebuild exon 2576316 2576369 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.3"; Scaffold004 rebuild exon 2576455 2576509 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.3"; Scaffold004 rebuild exon 2576596 2576703 . - . gene_id "RvY_09190"; transcript_id "RvY_09190.3"; Scaffold004 rebuild transcript 2578968 2580850 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; gene_name "HSD17B7"; annotation "estradiol 17beta-dehydrogenase / 3-keto steroid reductase [EC:1.1.1.62 1.1.1.270]"; Pfam "[adh_short] short chain dehydrogenase|[KR]"; CDD "Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]"; EC "EC1.1.1.270|EC1.1.1.62"; KO "K13373"; Scaffold004 rebuild exon 2578968 2579057 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2579114 2579209 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2579294 2579350 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2579426 2579512 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2579587 2579680 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2579761 2579901 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2579983 2580026 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2580127 2580187 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2580258 2580350 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2580534 2580737 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild exon 2580807 2580850 . - . gene_id "RvY_09191"; transcript_id "RvY_09191.1"; Scaffold004 rebuild transcript 2583608 2590289 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; gene_name "K01104"; annotation "Tyrosine-protein phosphatase 10D"; Pfam "[fn3] Fibronectin type III domain|[Y_phosphatase] Protein-tyrosine phosphatase"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K01104"; similar_genes "PTP10_DROME(e-value:3.4e-60;bit-score:229.0)"; Scaffold004 rebuild exon 2583608 2583673 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2583916 2584156 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2584252 2584392 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2584509 2584907 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2585212 2585587 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2585691 2585845 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2585919 2586194 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2586367 2586642 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2586773 2587146 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2587229 2587385 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2587447 2587731 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2587803 2588017 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2588098 2588353 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2588417 2588609 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2588678 2588762 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2588841 2588910 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2588989 2589086 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2589175 2589202 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2589346 2589590 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2589654 2589802 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2589881 2590016 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2590080 2590185 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild exon 2590246 2590289 . + . gene_id "RvY_09192"; transcript_id "RvY_09192.1"; Scaffold004 rebuild transcript 2592177 2593055 . + . gene_id "RvY_09193"; transcript_id "RvY_09193.1"; annotation "hypothetical protein."; Pfam "[Insulin] Insulin/IGF/Relaxin family"; Scaffold004 rebuild exon 2592177 2592591 . + . gene_id "RvY_09193"; transcript_id "RvY_09193.1"; Scaffold004 rebuild exon 2592700 2593055 . + . gene_id "RvY_09193"; transcript_id "RvY_09193.1"; Scaffold004 rebuild transcript 2593400 2594048 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.1"; gene_name "(1)SNRNP27"; annotation "(1)U4/U6.U5 tri-snRNP-associated protein 3(2)hypothetical protein."; Pfam "[DUF1777]"; CDD "(1)Protein of unknown function (DUF1777). This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins."; KO "(1)K12846"; Scaffold004 rebuild exon 2593400 2593627 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.1"; Scaffold004 rebuild exon 2593686 2593969 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.1"; Scaffold004 rebuild exon 2594042 2594048 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.1"; Scaffold004 rebuild transcript 2593555 2593954 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.2"; gene_name "(1)SNRNP27"; annotation "(1)U4/U6.U5 tri-snRNP-associated protein 3(2)hypothetical protein."; Pfam "[DUF1777]"; CDD "(1)Protein of unknown function (DUF1777). This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins."; KO "(1)K12846"; Scaffold004 rebuild exon 2593555 2593627 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.2"; Scaffold004 rebuild exon 2593686 2593954 . - . gene_id "RvY_09194"; transcript_id "RvY_09194.2"; Scaffold004 rebuild transcript 2595282 2598056 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; gene_name "(2)K07157"; annotation "(1)hypothetical protein.(2)Unclassified; Poorly Characterized; General function prediction only"; Pfam "[TPR_2] Tetratricopeptide repeat|[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[TPR_1] Tetratricopeptide repeat|[zf-RING_2] Ring finger domain|[TPR_11] TPR repeat|[LON] ATP-dependent protease La (LON) domain"; CDD "(2)Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]"; KO "(2)K07157"; similar_genes "LONF2_HUMAN(e-value:1.2e-07;bit-score:55.0)"; Scaffold004 rebuild exon 2595282 2595798 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2595857 2596155 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2596219 2596351 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2596454 2596586 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2596680 2596794 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2596856 2596977 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2597071 2597142 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2597220 2597443 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2597550 2597612 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2597702 2597842 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild exon 2597905 2598056 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.1"; Scaffold004 rebuild transcript 2595282 2597499 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; gene_name "(2)K07157"; annotation "(1)hypothetical protein.(2)Unclassified; Poorly Characterized; General function prediction only"; Pfam "[TPR_2] Tetratricopeptide repeat|[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[TPR_1] Tetratricopeptide repeat|[zf-RING_2] Ring finger domain|[TPR_11] TPR repeat|[LON] ATP-dependent protease La (LON) domain"; CDD "(2)Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]"; KO "(2)K07157"; similar_genes "LONF2_HUMAN(e-value:1.2e-07;bit-score:55.0)"; Scaffold004 rebuild exon 2595282 2595798 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2595857 2596155 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2596219 2596351 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2596454 2596586 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2596680 2596794 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2596856 2596977 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2597071 2597142 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild exon 2597220 2597499 . + . gene_id "RvY_09195"; transcript_id "RvY_09195.2"; Scaffold004 rebuild transcript 2598508 2599091 . - . gene_id "RvY_09196"; transcript_id "RvY_09196.1"; annotation "hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; similar_genes "PARVB_HUMAN(e-value:1.2e-17;bit-score:88.0)"; Scaffold004 rebuild exon 2598508 2598590 . - . gene_id "RvY_09196"; transcript_id "RvY_09196.1"; Scaffold004 rebuild exon 2598683 2598755 . - . gene_id "RvY_09196"; transcript_id "RvY_09196.1"; Scaffold004 rebuild exon 2598836 2598937 . - . gene_id "RvY_09196"; transcript_id "RvY_09196.1"; Scaffold004 rebuild exon 2599032 2599091 . - . gene_id "RvY_09196"; transcript_id "RvY_09196.1"; Scaffold004 rebuild transcript 2599362 2600619 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; gene_name "PARV"; annotation "parvin"; Pfam "[CH] Calponin homology (CH) domain"; KO "K06275"; similar_genes "PARVA_MOUSE(e-value:3.6e-15;bit-score:79.0)"; Scaffold004 rebuild exon 2599362 2599454 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild exon 2599516 2599631 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild exon 2599733 2599876 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild exon 2600009 2600114 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild exon 2600235 2600305 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild exon 2600403 2600492 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild exon 2600595 2600619 . - . gene_id "RvY_09197"; transcript_id "RvY_09197.1"; Scaffold004 rebuild transcript 2601041 2602498 . + . gene_id "RvY_09198"; transcript_id "RvY_09198.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2601041 2601475 . + . gene_id "RvY_09198"; transcript_id "RvY_09198.1"; Scaffold004 rebuild exon 2601535 2601611 . + . gene_id "RvY_09198"; transcript_id "RvY_09198.1"; Scaffold004 rebuild exon 2601858 2601955 . + . gene_id "RvY_09198"; transcript_id "RvY_09198.1"; Scaffold004 rebuild exon 2602338 2602498 . + . gene_id "RvY_09198"; transcript_id "RvY_09198.1"; Scaffold004 rebuild transcript 2602914 2603475 . + . gene_id "RvY_09199"; transcript_id "RvY_09199.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2602914 2602961 . + . gene_id "RvY_09199"; transcript_id "RvY_09199.1"; Scaffold004 rebuild exon 2603091 2603172 . + . gene_id "RvY_09199"; transcript_id "RvY_09199.1"; Scaffold004 rebuild exon 2603279 2603475 . + . gene_id "RvY_09199"; transcript_id "RvY_09199.1"; Scaffold004 rebuild transcript 2604842 2606609 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; gene_name "(1)DUSP(2)DSP_MapKP"; annotation "(1)dual specificity phosphatase [EC:3.1.3.16 3.1.3.48](2)hypothetical protein."; Pfam "[Rhodanese] Rhodanese-like domain|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "(1)Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower Scaffold004 rebuild exon 2604842 2604931 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild exon 2605050 2605160 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild exon 2605251 2605425 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild exon 2605506 2605687 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild exon 2605801 2605948 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild exon 2606036 2606159 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild exon 2606297 2606609 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.1"; Scaffold004 rebuild transcript 2604842 2605980 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.2"; gene_name "(1)DUSP(2)DSP_MapKP"; annotation "(1)dual specificity phosphatase [EC:3.1.3.16 3.1.3.48](2)hypothetical protein."; Pfam "[Rhodanese] Rhodanese-like domain|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "(1)Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower Scaffold004 rebuild exon 2604842 2604931 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.2"; Scaffold004 rebuild exon 2605050 2605160 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.2"; Scaffold004 rebuild exon 2605251 2605425 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.2"; Scaffold004 rebuild exon 2605506 2605687 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.2"; Scaffold004 rebuild exon 2605801 2605980 . + . gene_id "RvY_09200"; transcript_id "RvY_09200.2"; Scaffold004 rebuild transcript 2606856 2608857 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; gene_name "PABP-1234"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "K14573"; Scaffold004 rebuild exon 2606856 2607247 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2607328 2607437 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2607543 2607642 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2607714 2607917 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2607988 2608047 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2608153 2608245 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2608379 2608454 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2608530 2608630 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild exon 2608698 2608857 . - . gene_id "RvY_09201"; transcript_id "RvY_09201.1"; Scaffold004 rebuild transcript 2610054 2614011 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; gene_name "DDX5"; annotation "Probable ATP-dependent RNA helicase DDX17"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "helicase; Provisional"; EC "EC3.6.1.-"; KO "K12823"; similar_genes "DDX17_MOUSE(e-value:1.6e-140;bit-score:496.0)"; Scaffold004 rebuild exon 2610054 2610202 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2610284 2610524 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2610590 2610820 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2610929 2610994 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2611541 2611843 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2612064 2612282 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2612341 2612467 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2612701 2612760 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2613406 2613642 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild exon 2613848 2614011 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.1"; Scaffold004 rebuild transcript 2609437 2614011 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; gene_name "DDX5"; annotation "Probable ATP-dependent RNA helicase DDX17"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "helicase; Provisional"; EC "EC3.6.1.-"; KO "K12823"; similar_genes "DDX17_MOUSE(e-value:1.6e-140;bit-score:496.0)"; Scaffold004 rebuild exon 2609437 2609471 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2610284 2610524 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2610590 2610820 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2610929 2610994 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2611541 2611843 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2612064 2612282 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2612341 2612467 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2612701 2612760 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2613406 2613642 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild exon 2613848 2614011 . + . gene_id "RvY_09202"; transcript_id "RvY_09202.2"; Scaffold004 rebuild transcript 2612873 2613229 . - . gene_id "RvY_09203"; transcript_id "RvY_09203.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2612873 2613229 . - . gene_id "RvY_09203"; transcript_id "RvY_09203.1"; Scaffold004 rebuild transcript 2614767 2615932 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.1"; gene_name "(2)TIGR00043"; annotation "hypothetical protein."; Pfam "[UPF0054] Uncharacterized protein family UPF0054"; CDD "(2)conserved hypothetical protein TIGR00043. This uncharacterized protein family is represented by a single member sequence only in nearly every bacterium."; Scaffold004 rebuild exon 2614767 2614880 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.1"; Scaffold004 rebuild exon 2615186 2615213 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.1"; Scaffold004 rebuild exon 2615399 2615679 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.1"; Scaffold004 rebuild exon 2615759 2615932 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.1"; Scaffold004 rebuild transcript 2614879 2615932 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.2"; gene_name "(2)TIGR00043"; annotation "hypothetical protein."; Pfam "[UPF0054] Uncharacterized protein family UPF0054"; CDD "(2)conserved hypothetical protein TIGR00043. This uncharacterized protein family is represented by a single member sequence only in nearly every bacterium."; Scaffold004 rebuild exon 2614879 2614880 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.2"; Scaffold004 rebuild exon 2615186 2615268 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.2"; Scaffold004 rebuild exon 2615399 2615679 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.2"; Scaffold004 rebuild exon 2615759 2615932 . + . gene_id "RvY_09204"; transcript_id "RvY_09204.2"; Scaffold004 rebuild transcript 2616279 2621087 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; gene_name "AUB"; annotation "aubergine"; Pfam "[Piwi]|[PAZ]"; CDD "Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; KO "K02156"; similar_genes "PIWL2_MOUSE(e-value:8.0e-13;bit-score:72.0)"; Scaffold004 rebuild exon 2616279 2616368 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2616444 2616704 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2616776 2617030 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2617118 2617281 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2617493 2617535 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2617612 2617839 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2618269 2618724 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2618800 2619075 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2619208 2619295 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2619374 2619577 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2619726 2619847 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2619909 2620107 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2620292 2620587 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild exon 2620686 2621087 . - . gene_id "RvY_09205"; transcript_id "RvY_09205.1"; Scaffold004 rebuild transcript 2622094 2623144 . - . gene_id "RvY_09206"; transcript_id "RvY_09206.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_L23] Ribosomal protein L23"; Scaffold004 rebuild exon 2622094 2622255 . - . gene_id "RvY_09206"; transcript_id "RvY_09206.1"; Scaffold004 rebuild exon 2622485 2622555 . - . gene_id "RvY_09206"; transcript_id "RvY_09206.1"; Scaffold004 rebuild exon 2622746 2622828 . - . gene_id "RvY_09206"; transcript_id "RvY_09206.1"; Scaffold004 rebuild exon 2622931 2623053 . - . gene_id "RvY_09206"; transcript_id "RvY_09206.1"; Scaffold004 rebuild exon 2623131 2623144 . - . gene_id "RvY_09206"; transcript_id "RvY_09206.1"; Scaffold004 rebuild transcript 2623861 2626954 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; annotation "ATPase family AAA domain-containing protein 3-B"; Pfam "[DUF3523]|[AAA] ATPase family associated with various cellular activities (AAA)"; similar_genes "ATD3B_XENLA(e-value:7.7e-183;bit-score:636.0)"; Scaffold004 rebuild exon 2623861 2624098 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2624188 2624264 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2624482 2624583 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2624644 2624703 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2624790 2624859 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2624938 2625103 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2625192 2625261 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2625328 2625483 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2625559 2625615 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2625702 2625827 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2625882 2626006 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2626072 2626123 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2626211 2626281 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2626362 2626641 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild exon 2626751 2626954 . + . gene_id "RvY_09207"; transcript_id "RvY_09207.1"; Scaffold004 rebuild transcript 2630688 2631411 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; gene_name "VAMP2"; annotation "putative Synaptobrevin-1"; Pfam "[Synaptobrevin]"; KO "K13504"; similar_genes "SYB1_CAEBR(e-value:3.2e-33;bit-score:139.0)"; Scaffold004 rebuild exon 2630688 2630710 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; Scaffold004 rebuild exon 2630790 2630921 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; Scaffold004 rebuild exon 2630994 2631042 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; Scaffold004 rebuild exon 2631142 2631171 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; Scaffold004 rebuild exon 2631252 2631351 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; Scaffold004 rebuild exon 2631410 2631411 . - . gene_id "RvY_09208"; transcript_id "RvY_09208.1"; Scaffold004 rebuild transcript 2632327 2632853 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.1"; annotation "hypothetical protein."; Pfam "[Synaptobrevin]"; Scaffold004 rebuild exon 2632327 2632391 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.1"; Scaffold004 rebuild exon 2632454 2632532 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.1"; Scaffold004 rebuild exon 2632619 2632769 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.1"; Scaffold004 rebuild exon 2632846 2632853 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.1"; Scaffold004 rebuild transcript 2632327 2632853 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.2"; annotation "hypothetical protein."; Pfam "[Synaptobrevin]"; Scaffold004 rebuild exon 2632327 2632391 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.2"; Scaffold004 rebuild exon 2632454 2632532 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.2"; Scaffold004 rebuild exon 2632619 2632769 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.2"; Scaffold004 rebuild exon 2632852 2632853 . - . gene_id "RvY_09209"; transcript_id "RvY_09209.2"; Scaffold004 rebuild transcript 2634008 2634736 . + . gene_id "RvY_09210"; transcript_id "RvY_09210.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2634008 2634228 . + . gene_id "RvY_09210"; transcript_id "RvY_09210.1"; Scaffold004 rebuild exon 2634322 2634441 . + . gene_id "RvY_09210"; transcript_id "RvY_09210.1"; Scaffold004 rebuild exon 2634532 2634647 . + . gene_id "RvY_09210"; transcript_id "RvY_09210.1"; Scaffold004 rebuild exon 2634720 2634736 . + . gene_id "RvY_09210"; transcript_id "RvY_09210.1"; Scaffold004 rebuild transcript 2635889 2636308 . + . gene_id "RvY_09211"; transcript_id "RvY_09211.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2635889 2636308 . + . gene_id "RvY_09211"; transcript_id "RvY_09211.1"; Scaffold004 rebuild transcript 2637275 2637451 . - . gene_id "RvY_09212"; transcript_id "RvY_09212.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2637275 2637451 . - . gene_id "RvY_09212"; transcript_id "RvY_09212.1"; Scaffold004 rebuild transcript 2638158 2638773 . - . gene_id "RvY_09213"; transcript_id "RvY_09213.1"; gene_name "SPCS3"; annotation "signal peptidase complex subunit 3 [EC:3.4.-.-]"; Pfam "[SPC22] Signal peptidase subunit"; EC "EC3.4.-.-"; KO "K12948"; Scaffold004 rebuild exon 2638158 2638648 . - . gene_id "RvY_09213"; transcript_id "RvY_09213.1"; Scaffold004 rebuild exon 2638713 2638773 . - . gene_id "RvY_09213"; transcript_id "RvY_09213.1"; Scaffold004 rebuild transcript 2639592 2641958 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; gene_name "FAR"; annotation "putative Fatty acyl-CoA reductase 1"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family|[Sterile] Male sterility protein"; EC "EC1.2.1.-|EC1.2.1.n2"; KO "K13356"; similar_genes "FACR1_CHICK(e-value:6.2e-32;bit-score:135.0)"; Scaffold004 rebuild exon 2639592 2639657 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2639724 2639849 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2639955 2640130 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2640194 2640373 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2640461 2640648 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2640727 2640770 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2640830 2640948 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2641019 2641168 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2641261 2641350 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2641421 2641550 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild exon 2641659 2641958 . + . gene_id "RvY_09214"; transcript_id "RvY_09214.1"; Scaffold004 rebuild transcript 2642297 2649078 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; gene_name "SIM"; annotation "putative Single-minded homolog 1"; Pfam "[PAS_3] PAS fold|[PAS] PAS fold|[PAS_9] PAS domain"; CDD "PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya."; KO "K09100"; similar_genes "SIM1_DANRE(e-value:8.6e-40;bit-score:161.0)"; Scaffold004 rebuild exon 2642297 2643257 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2643466 2643619 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2643699 2643805 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2643883 2644001 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2644094 2644189 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2644356 2644441 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2644594 2644717 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2644822 2644911 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2645008 2645102 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild exon 2648904 2649078 . - . gene_id "RvY_09215"; transcript_id "RvY_09215.1"; Scaffold004 rebuild transcript 2649782 2650081 . - . gene_id "RvY_09216"; transcript_id "RvY_09216.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2649782 2650081 . - . gene_id "RvY_09216"; transcript_id "RvY_09216.1"; Scaffold004 rebuild transcript 2650839 2651156 . - . gene_id "RvY_09217"; transcript_id "RvY_09217.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2650839 2651156 . - . gene_id "RvY_09217"; transcript_id "RvY_09217.1"; Scaffold004 rebuild transcript 2652068 2652589 . - . gene_id "RvY_09218"; transcript_id "RvY_09218.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2652068 2652589 . - . gene_id "RvY_09218"; transcript_id "RvY_09218.1"; Scaffold004 rebuild transcript 2653216 2656228 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; gene_name "SFPQ"; annotation "putative Paraspeckle component 1"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[NOPS] NOPS (NUC059) domain|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold004 rebuild exon 2653216 2653440 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2654092 2654141 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2654245 2654393 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2654476 2654527 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2654650 2654846 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2654990 2655085 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2655174 2655475 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild exon 2655710 2656228 . - . gene_id "RvY_09219"; transcript_id "RvY_09219.1"; Scaffold004 rebuild transcript 2657874 2658714 . + . gene_id "RvY_09220"; transcript_id "RvY_09220.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2657874 2657955 . + . gene_id "RvY_09220"; transcript_id "RvY_09220.1"; Scaffold004 rebuild exon 2657990 2658714 . + . gene_id "RvY_09220"; transcript_id "RvY_09220.1"; Scaffold004 rebuild transcript 2660379 2662210 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; gene_name "HTATSF1"; annotation "HIV Tat-specific factor 1"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed."; KO "K13093"; Scaffold004 rebuild exon 2660379 2660549 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild exon 2660634 2660925 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild exon 2661076 2661281 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild exon 2661352 2661524 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild exon 2661657 2661753 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild exon 2661813 2661902 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild exon 2661995 2662210 . + . gene_id "RvY_09221"; transcript_id "RvY_09221.1"; Scaffold004 rebuild transcript 2665300 2667965 . + . gene_id "RvY_09222"; transcript_id "RvY_09222.1"; annotation "hypothetical protein."; Pfam "[Vg_Tdu] Vestigial/Tondu family"; Scaffold004 rebuild exon 2665300 2665494 . + . gene_id "RvY_09222"; transcript_id "RvY_09222.1"; Scaffold004 rebuild exon 2665989 2666355 . + . gene_id "RvY_09222"; transcript_id "RvY_09222.1"; Scaffold004 rebuild exon 2667363 2667830 . + . gene_id "RvY_09222"; transcript_id "RvY_09222.1"; Scaffold004 rebuild exon 2667895 2667965 . + . gene_id "RvY_09222"; transcript_id "RvY_09222.1"; Scaffold004 rebuild transcript 2671786 2673997 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; gene_name "WASF3"; annotation "putative Wiskott-Aldrich syndrome protein family member 3"; Pfam "[WH2] WH2 motif"; CDD "DNA polymerase III subunits gamma and tau; Validated"; KO "K06083"; similar_genes "WASF3_MOUSE(e-value:4.1e-31;bit-score:132.0)"; Scaffold004 rebuild exon 2671786 2672053 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild exon 2672145 2672298 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild exon 2672481 2672595 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild exon 2672694 2673199 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild exon 2673282 2673546 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild exon 2673654 2673744 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild exon 2673813 2673997 . + . gene_id "RvY_09223"; transcript_id "RvY_09223.1"; Scaffold004 rebuild transcript 2674393 2674569 . - . gene_id "RvY_09224"; transcript_id "RvY_09224.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2674393 2674569 . - . gene_id "RvY_09224"; transcript_id "RvY_09224.1"; Scaffold004 rebuild transcript 2674953 2677888 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2674953 2675123 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild exon 2675290 2675556 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild exon 2675633 2676274 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild exon 2676345 2676590 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild exon 2676672 2676798 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild exon 2676890 2677107 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild exon 2677313 2677888 . + . gene_id "RvY_09225"; transcript_id "RvY_09225.1"; Scaffold004 rebuild transcript 2678234 2680874 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; gene_name "maeB"; annotation "NADP-dependent malic enzyme, mitochondrial"; Pfam "[malic] Malic enzyme, N-terminal domain|[Malic_M] Malic enzyme, NAD binding domain"; CDD "malate dehydrogenase; Provisional"; EC "EC1.1.1.40"; KO "K00029"; similar_genes "MAON_HUMAN(e-value:5.0e-108;bit-score:388.0)"; Scaffold004 rebuild exon 2678234 2678619 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2678724 2678799 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2678867 2679009 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2679105 2679327 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2679389 2679486 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2679551 2679660 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2679719 2679822 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2679888 2680049 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2680166 2680241 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2680337 2680461 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2680527 2680685 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild exon 2680770 2680874 . - . gene_id "RvY_09226"; transcript_id "RvY_09226.1"; Scaffold004 rebuild transcript 2681985 2684607 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; gene_name "CDC40"; annotation "Pre-mRNA-processing factor 17"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K12816"; similar_genes "PRP17_HUMAN(e-value:9.8e-92;bit-score:334.0)"; Scaffold004 rebuild exon 2681985 2682152 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2682250 2682336 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2682408 2682615 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2682726 2682862 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2682950 2683046 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2683116 2683330 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2683404 2683551 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2683624 2683745 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2683865 2683998 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2684060 2684136 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2684215 2684359 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild exon 2684430 2684607 . + . gene_id "RvY_09227"; transcript_id "RvY_09227.1"; Scaffold004 rebuild transcript 2685207 2691489 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; gene_name "PTZ00102"; annotation "hypothetical protein."; Pfam "[AhpC-TSA] AhpC/TSA family|[GAD]|[DUF2847]|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_5] Thioredoxin|[TraF] F plasmid transfer operon protein|[Thioredoxin_8] Thioredoxin-like|[TrbC_Ftype] Type-F conjugative transfer system pilin assembly protein|[HyaE] Hydrogenase-1 expression protein HyaE|[Thioredoxin]|[W2] eIF4-gamma/eIF5/eIF2-epsilon|[Thioredoxin_3] Thioredoxin domain|[DUF836] Glutaredoxin-like domain (DUF836)"; CDD "disulphide isomerase; Provisional"; Scaffold004 rebuild exon 2685207 2685381 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2685778 2685957 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2686025 2686165 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2686227 2686547 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2686622 2686801 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2686914 2687045 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2687119 2687239 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2687301 2688145 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2688210 2688533 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2688782 2689423 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2689501 2689683 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2689770 2689817 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2689897 2689989 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2690075 2690149 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2690210 2690317 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2690423 2690563 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2690629 2690811 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild exon 2691317 2691489 . + . gene_id "RvY_09228"; transcript_id "RvY_09228.1"; Scaffold004 rebuild transcript 2691900 2692580 . - . gene_id "RvY_09229"; transcript_id "RvY_09229.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2691900 2691915 . - . gene_id "RvY_09229"; transcript_id "RvY_09229.1"; Scaffold004 rebuild exon 2691975 2692028 . - . gene_id "RvY_09229"; transcript_id "RvY_09229.1"; Scaffold004 rebuild exon 2692109 2692424 . - . gene_id "RvY_09229"; transcript_id "RvY_09229.1"; Scaffold004 rebuild exon 2692496 2692580 . - . gene_id "RvY_09229"; transcript_id "RvY_09229.1"; Scaffold004 rebuild transcript 2692643 2693943 . - . gene_id "RvY_09230"; transcript_id "RvY_09230.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2692643 2692815 . - . gene_id "RvY_09230"; transcript_id "RvY_09230.1"; Scaffold004 rebuild exon 2692940 2693156 . - . gene_id "RvY_09230"; transcript_id "RvY_09230.1"; Scaffold004 rebuild exon 2693236 2693499 . - . gene_id "RvY_09230"; transcript_id "RvY_09230.1"; Scaffold004 rebuild exon 2693607 2693860 . - . gene_id "RvY_09230"; transcript_id "RvY_09230.1"; Scaffold004 rebuild exon 2693931 2693943 . - . gene_id "RvY_09230"; transcript_id "RvY_09230.1"; Scaffold004 rebuild transcript 2694125 2694632 . - . gene_id "RvY_09231"; transcript_id "RvY_09231.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2694125 2694482 . - . gene_id "RvY_09231"; transcript_id "RvY_09231.1"; Scaffold004 rebuild exon 2694577 2694632 . - . gene_id "RvY_09231"; transcript_id "RvY_09231.1"; Scaffold004 rebuild transcript 2694586 2694915 . - . gene_id "RvY_09231"; transcript_id "RvY_09231.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2694586 2694915 . - . gene_id "RvY_09231"; transcript_id "RvY_09231.2"; Scaffold004 rebuild transcript 2696178 2700228 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; gene_name "RPS6KA"; annotation "Ribosomal protein S6 kinase alpha-3"; Pfam "[APH] Phosphotransferase enzyme family|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Pkinase_C] Protein kinase C terminal domain|[Kdo] Lipopolysaccharide kinase (Kdo/WaaP) family"; CDD "STKc_RSK_N: Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks."; EC "EC2.7.11.1"; KO "K04373"; similar_genes "KS6A3_MOUSE(e-value:1.8e-148;bit-score:522.0)"; Scaffold004 rebuild exon 2696178 2696240 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2696331 2696411 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2696534 2696653 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2696732 2696813 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2696893 2696973 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2697068 2697147 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2697210 2697316 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2697382 2697461 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2697526 2697623 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2697683 2697753 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2697907 2697995 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2698066 2698233 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2698318 2698454 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2698512 2698577 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2698642 2698716 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2698791 2699039 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2699166 2699416 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2699522 2699639 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2699792 2699865 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2699943 2700006 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild exon 2700097 2700228 . + . gene_id "RvY_09232"; transcript_id "RvY_09232.1"; Scaffold004 rebuild transcript 2700955 2701715 . + . gene_id "RvY_09233"; transcript_id "RvY_09233.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2700955 2701249 . + . gene_id "RvY_09233"; transcript_id "RvY_09233.1"; Scaffold004 rebuild exon 2701334 2701397 . + . gene_id "RvY_09233"; transcript_id "RvY_09233.1"; Scaffold004 rebuild exon 2701460 2701556 . + . gene_id "RvY_09233"; transcript_id "RvY_09233.1"; Scaffold004 rebuild exon 2701656 2701715 . + . gene_id "RvY_09233"; transcript_id "RvY_09233.1"; Scaffold004 rebuild transcript 2702369 2706285 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 2702369 2702539 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2702618 2702818 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2702988 2703239 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2703338 2703397 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2703464 2703571 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2703669 2703923 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2703981 2704197 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2704274 2704677 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2704750 2704851 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2704914 2705151 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2705220 2705295 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2705357 2705519 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2705595 2705695 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild exon 2705886 2706285 . + . gene_id "RvY_09234"; transcript_id "RvY_09234.1"; Scaffold004 rebuild transcript 2707665 2709367 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; annotation "Mitochondrial 2-oxoglutarate/malate carrier protein"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15104"; similar_genes "M2OM_HUMAN(e-value:1.1e-111;bit-score:400.0)"; Scaffold004 rebuild exon 2707665 2707735 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2707804 2707934 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2708019 2708118 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2708231 2708321 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2708400 2708490 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2708559 2708681 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2708751 2708834 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2708910 2709000 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2709081 2709142 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild exon 2709222 2709367 . - . gene_id "RvY_09235"; transcript_id "RvY_09235.1"; Scaffold004 rebuild transcript 2710137 2710977 . - . gene_id "RvY_09236"; transcript_id "RvY_09236.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2710137 2710861 . - . gene_id "RvY_09236"; transcript_id "RvY_09236.1"; Scaffold004 rebuild exon 2710896 2710977 . - . gene_id "RvY_09236"; transcript_id "RvY_09236.1"; Scaffold004 rebuild transcript 2713018 2713230 . - . gene_id "RvY_09237"; transcript_id "RvY_09237.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2713018 2713230 . - . gene_id "RvY_09237"; transcript_id "RvY_09237.1"; Scaffold004 rebuild transcript 2713258 2715905 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; gene_name "GAPDH"; annotation "Glyceraldehyde 3-phosphate dehydrogenase, testis-specific"; Pfam "[Gp_dh_N] Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain|[Gp_dh_C] Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain"; CDD "glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model."; EC "EC1.2.1.12"; KO "K00134"; similar_genes "G3PT_DANRE(e-value:1.6e-138;bit-score:489.0)"; Scaffold004 rebuild exon 2713258 2713280 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2713437 2713533 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2714503 2714609 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2714679 2714831 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2714930 2714986 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2715047 2715185 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2715247 2715341 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2715429 2715591 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2715656 2715753 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild exon 2715827 2715905 . + . gene_id "RvY_09238"; transcript_id "RvY_09238.1"; Scaffold004 rebuild transcript 2716659 2717164 . + . gene_id "RvY_09239"; transcript_id "RvY_09239.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2716659 2716776 . + . gene_id "RvY_09239"; transcript_id "RvY_09239.1"; Scaffold004 rebuild exon 2716839 2717164 . + . gene_id "RvY_09239"; transcript_id "RvY_09239.1"; Scaffold004 rebuild transcript 2717361 2717626 . + . gene_id "RvY_09240"; transcript_id "RvY_09240.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2717361 2717452 . + . gene_id "RvY_09240"; transcript_id "RvY_09240.1"; Scaffold004 rebuild exon 2717524 2717626 . + . gene_id "RvY_09240"; transcript_id "RvY_09240.1"; Scaffold004 rebuild transcript 2719455 2720172 . - . gene_id "RvY_09241"; transcript_id "RvY_09241.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2719455 2719456 . - . gene_id "RvY_09241"; transcript_id "RvY_09241.1"; Scaffold004 rebuild exon 2719566 2719703 . - . gene_id "RvY_09241"; transcript_id "RvY_09241.1"; Scaffold004 rebuild exon 2719842 2720172 . - . gene_id "RvY_09241"; transcript_id "RvY_09241.1"; Scaffold004 rebuild transcript 2720421 2720648 . + . gene_id "RvY_09242"; transcript_id "RvY_09242.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2720421 2720648 . + . gene_id "RvY_09242"; transcript_id "RvY_09242.1"; Scaffold004 rebuild transcript 2722110 2722283 . + . gene_id "RvY_09243"; transcript_id "RvY_09243.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2722110 2722283 . + . gene_id "RvY_09243"; transcript_id "RvY_09243.1"; Scaffold004 rebuild transcript 2722381 2724327 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; gene_name "K06942"; annotation "GTP-binding protein CG1354"; Pfam "[FeoB_N] Ferrous iron transport protein B|[YchF-GTPase_C] Protein of unknown function (DUF933)|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "GTP-binding protein; Provisional"; KO "K06942"; similar_genes "Y1354_DROME(e-value:2.0e-94;bit-score:343.0)"; Scaffold004 rebuild exon 2722381 2722481 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2722612 2722694 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2722854 2722914 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2722987 2723114 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2723193 2723544 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2723607 2723844 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2723924 2724046 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2724147 2724192 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild exon 2724266 2724327 . + . gene_id "RvY_09244"; transcript_id "RvY_09244.1"; Scaffold004 rebuild transcript 2724964 2725489 . + . gene_id "RvY_09245"; transcript_id "RvY_09245.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2724964 2725095 . + . gene_id "RvY_09245"; transcript_id "RvY_09245.1"; Scaffold004 rebuild exon 2725343 2725489 . + . gene_id "RvY_09245"; transcript_id "RvY_09245.1"; Scaffold004 rebuild transcript 2725728 2727357 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; gene_name "SP4"; annotation "putative Transcription factor Sp4"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09194"; similar_genes "SP4_HUMAN(e-value:1.7e-42;bit-score:170.0)"; Scaffold004 rebuild exon 2725728 2726231 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; Scaffold004 rebuild exon 2726295 2726331 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; Scaffold004 rebuild exon 2726420 2726594 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; Scaffold004 rebuild exon 2726672 2726862 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; Scaffold004 rebuild exon 2726987 2727059 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; Scaffold004 rebuild exon 2727201 2727357 . + . gene_id "RvY_09246"; transcript_id "RvY_09246.1"; Scaffold004 rebuild transcript 2730242 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "LIPB1_HUMAN(e-value:1.5e-24;bit-score:111.0)"; Scaffold004 rebuild exon 2730242 2730341 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2730417 2730889 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2732385 2732588 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2732900 2733031 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2733167 2733248 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2733377 2733493 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2733574 2733746 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2733809 2734187 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2734377 2734470 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2734559 2734693 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2734775 2734925 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2734989 2735189 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2735266 2735391 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2735527 2735618 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2735688 2735907 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild exon 2735964 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.1"; Scaffold004 rebuild transcript 2730242 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "LIPB1_HUMAN(e-value:1.5e-24;bit-score:111.0)"; Scaffold004 rebuild exon 2730242 2730341 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2730417 2730889 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2732385 2732588 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2732900 2733031 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2733167 2733248 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2733377 2733493 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2733574 2733746 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2733809 2733887 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2734377 2734470 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2734559 2734693 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2734775 2734925 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2734989 2735189 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2735266 2735391 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2735527 2735618 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2735688 2735907 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild exon 2735964 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.2"; Scaffold004 rebuild transcript 2730242 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "LIPB1_HUMAN(e-value:1.5e-24;bit-score:111.0)"; Scaffold004 rebuild exon 2730242 2730341 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2730417 2730889 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2732385 2732588 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2732900 2733031 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2733167 2733248 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2733377 2733493 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2733574 2733746 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2733809 2733891 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2734381 2734470 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2734559 2734693 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2734775 2734925 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2734989 2735189 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2735266 2735391 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2735527 2735618 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2735688 2735907 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild exon 2735964 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.3"; Scaffold004 rebuild transcript 2731589 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "LIPB1_HUMAN(e-value:1.5e-24;bit-score:111.0)"; Scaffold004 rebuild exon 2731589 2732005 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2732385 2732588 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2732900 2733031 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2733167 2733248 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2733377 2733493 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2733574 2733746 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2733809 2733891 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2734381 2734470 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2734559 2734693 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2734775 2734925 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2734989 2735189 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2735266 2735391 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2735527 2735618 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2735688 2735907 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild exon 2735964 2736158 . + . gene_id "RvY_09247"; transcript_id "RvY_09247.4"; Scaffold004 rebuild transcript 2736379 2737375 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; gene_name "STKc_CDK8"; annotation "putative Cell division protein kinase 8"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses."; EC "EC2.7.11.22"; similar_genes "CDK8_AEDAE(e-value:3.7e-34;bit-score:143.0)"; Scaffold004 rebuild exon 2736379 2736549 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; Scaffold004 rebuild exon 2736639 2736770 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; Scaffold004 rebuild exon 2736852 2736948 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; Scaffold004 rebuild exon 2737027 2737124 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; Scaffold004 rebuild exon 2737196 2737268 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; Scaffold004 rebuild exon 2737332 2737375 . - . gene_id "RvY_09248"; transcript_id "RvY_09248.1"; Scaffold004 rebuild transcript 2737801 2738969 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; gene_name "STKc_CDK8_like"; annotation "Cell division protein kinase 8"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions."; EC "EC2.7.11.22"; similar_genes "CDK8_DROME(e-value:2.6e-79;bit-score:293.0)"; Scaffold004 rebuild exon 2737801 2737824 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2737895 2737941 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2738011 2738068 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2738140 2738280 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2738418 2738528 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2738606 2738678 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2738747 2738795 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild exon 2738879 2738969 . - . gene_id "RvY_09249"; transcript_id "RvY_09249.1"; Scaffold004 rebuild transcript 2739389 2745127 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; gene_name "KIF4S"; annotation "Kinesin-like protein KIF21A"; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward."; KO "K10395"; similar_genes "KI21A_HUMAN(e-value:1.7e-57;bit-score:220.0)"; Scaffold004 rebuild exon 2739389 2739429 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2739534 2739713 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2739769 2739835 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2739928 2740086 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2740164 2740223 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2740296 2740385 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2740466 2740594 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2740682 2740816 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2741058 2741604 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2741725 2742059 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2742334 2742672 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2742732 2743040 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2743106 2743174 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2743260 2743328 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2743390 2743614 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2743676 2743821 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2744137 2744245 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2744531 2744781 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild exon 2744845 2745127 . + . gene_id "RvY_09250"; transcript_id "RvY_09250.1"; Scaffold004 rebuild transcript 2745480 2748087 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2745480 2745858 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; Scaffold004 rebuild exon 2745961 2746378 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; Scaffold004 rebuild exon 2746475 2746928 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; Scaffold004 rebuild exon 2747048 2747266 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; Scaffold004 rebuild exon 2747365 2747546 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; Scaffold004 rebuild exon 2747769 2748087 . - . gene_id "RvY_09251"; transcript_id "RvY_09251.1"; Scaffold004 rebuild transcript 2748370 2749910 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; gene_name "EDEM2"; annotation "putative ER degradation-enhancing alpha-mannosidase-like 2"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; KO "K10085"; similar_genes "(1)EDEM2_HUMAN(e-value:2.7e-28;bit-score:123.0)(2)EDEM2_HUMAN(e-value:1.8e-27;bit-score:120.0)"; Scaffold004 rebuild exon 2748370 2749068 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; Scaffold004 rebuild exon 2749135 2749256 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; Scaffold004 rebuild exon 2749329 2749555 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; Scaffold004 rebuild exon 2749635 2749677 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; Scaffold004 rebuild exon 2749755 2749800 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; Scaffold004 rebuild exon 2749863 2749910 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.1"; Scaffold004 rebuild transcript 2749681 2751312 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; gene_name "EDEM2"; annotation "putative ER degradation-enhancing alpha-mannosidase-like 2"; Pfam "[Glyco_hydro_47] Glycosyl hydrolase family 47"; KO "K10085"; similar_genes "(1)EDEM2_HUMAN(e-value:2.7e-28;bit-score:123.0)(2)EDEM2_HUMAN(e-value:1.8e-27;bit-score:120.0)"; Scaffold004 rebuild exon 2749681 2749800 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2749863 2749894 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2749980 2750043 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2750119 2750295 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2750414 2750448 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2750525 2750650 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2750749 2750894 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2750975 2751085 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild exon 2751179 2751312 . - . gene_id "RvY_09252"; transcript_id "RvY_09252.2"; Scaffold004 rebuild transcript 2751889 2752421 . + . gene_id "RvY_09253"; transcript_id "RvY_09253.1"; gene_name "PFDN1"; annotation "prefoldin subunit 1"; Pfam "[Prefoldin_2] Prefoldin subunit"; KO "K09548"; Scaffold004 rebuild exon 2751889 2751915 . + . gene_id "RvY_09253"; transcript_id "RvY_09253.1"; Scaffold004 rebuild exon 2752077 2752421 . + . gene_id "RvY_09253"; transcript_id "RvY_09253.1"; Scaffold004 rebuild transcript 2755169 2769676 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; gene_name "DMD"; annotation "putative Dystrophin, isoform D"; Pfam "[ZZ] Zinc finger, ZZ type|[Spectrin] Spectrin repeat|[WW]|[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain|[efhand_1] EF hand|[efhand_2] EF-hand"; KO "K10366"; similar_genes "DMDD_DROME(e-value:6.6e-40;bit-score:162.0)"; Scaffold004 rebuild exon 2755169 2755184 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2756111 2756233 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2757551 2757612 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2757846 2757941 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2758005 2758079 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2758166 2758258 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2758362 2758450 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2758521 2758601 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2758685 2758800 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2758864 2758988 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2759056 2759205 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2759274 2759455 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2759546 2759690 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2759758 2759845 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2759932 2760161 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2760238 2760420 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2760499 2760841 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2760903 2761147 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2761217 2761382 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2761456 2761949 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2762009 2762344 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2762409 2762562 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2762628 2762728 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2762799 2762951 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2763023 2763232 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2763322 2763480 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2763569 2763727 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2763790 2763969 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2764108 2764485 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2764564 2764721 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2764815 2764968 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2765044 2765216 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2765641 2765888 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2766071 2766198 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2766307 2766441 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2766533 2766761 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2766819 2766879 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2766946 2767082 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2767152 2767356 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2767425 2767510 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2767579 2767736 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2767819 2767988 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2768073 2768184 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2768252 2768586 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2768647 2768710 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2768986 2769077 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2769155 2769341 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild exon 2769401 2769676 . + . gene_id "RvY_09254"; transcript_id "RvY_09254.1"; Scaffold004 rebuild transcript 2755281 2756041 . - . gene_id "RvY_09255"; transcript_id "RvY_09255.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2755281 2755514 . - . gene_id "RvY_09255"; transcript_id "RvY_09255.1"; Scaffold004 rebuild exon 2755931 2756041 . - . gene_id "RvY_09255"; transcript_id "RvY_09255.1"; Scaffold004 rebuild transcript 2770497 2772175 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; gene_name "ELOVL4"; annotation "putative Elongation of very long chain fatty acids protein 4"; Pfam "[ELO] GNS1/SUR4 family"; KO "K10249"; similar_genes "ELOV4_MACMU(e-value:1.9e-37;bit-score:153.0)"; Scaffold004 rebuild exon 2770497 2770572 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2770635 2770706 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2770824 2770939 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2771055 2771135 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2771244 2771415 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2771498 2771625 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2771696 2771905 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild exon 2772044 2772175 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.1"; Scaffold004 rebuild transcript 2770497 2771926 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; gene_name "ELOVL4"; annotation "putative Elongation of very long chain fatty acids protein 4"; Pfam "[ELO] GNS1/SUR4 family"; KO "K10249"; similar_genes "ELOV4_MACMU(e-value:1.9e-37;bit-score:153.0)"; Scaffold004 rebuild exon 2770497 2770572 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild exon 2770635 2770706 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild exon 2770824 2770939 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild exon 2771055 2771135 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild exon 2771244 2771415 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild exon 2771498 2771625 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild exon 2771696 2771926 . + . gene_id "RvY_09256"; transcript_id "RvY_09256.2"; Scaffold004 rebuild transcript 2772556 2774410 . + . gene_id "RvY_09257"; transcript_id "RvY_09257.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2772556 2772776 . + . gene_id "RvY_09257"; transcript_id "RvY_09257.1"; Scaffold004 rebuild exon 2772901 2773053 . + . gene_id "RvY_09257"; transcript_id "RvY_09257.1"; Scaffold004 rebuild exon 2773124 2773246 . + . gene_id "RvY_09257"; transcript_id "RvY_09257.1"; Scaffold004 rebuild exon 2773365 2773505 . + . gene_id "RvY_09257"; transcript_id "RvY_09257.1"; Scaffold004 rebuild exon 2773609 2774410 . + . gene_id "RvY_09257"; transcript_id "RvY_09257.1"; Scaffold004 rebuild transcript 2774816 2775644 . - . gene_id "RvY_09258"; transcript_id "RvY_09258.1"; gene_name "RP-S10e"; annotation "putative 40S ribosomal protein S10"; Pfam "[S10_plectin] Plectin/S10 domain"; KO "K02947"; similar_genes "RS10_SPOFR(e-value:3.8e-38;bit-score:156.0)"; Scaffold004 rebuild exon 2774816 2774920 . - . gene_id "RvY_09258"; transcript_id "RvY_09258.1"; Scaffold004 rebuild exon 2775117 2775401 . - . gene_id "RvY_09258"; transcript_id "RvY_09258.1"; Scaffold004 rebuild exon 2775501 2775644 . - . gene_id "RvY_09258"; transcript_id "RvY_09258.1"; Scaffold004 rebuild transcript 2776415 2777908 . + . gene_id "RvY_09259"; transcript_id "RvY_09259.1"; gene_name "CHERP"; annotation "calcium homeostasis endoplasmic reticulum protein"; Pfam "[Surp] Surp module"; CDD "Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes"; KO "K12841"; similar_genes "CHERP_HUMAN(e-value:1.3e-19;bit-score:94.0)"; Scaffold004 rebuild exon 2776415 2776448 . + . gene_id "RvY_09259"; transcript_id "RvY_09259.1"; Scaffold004 rebuild exon 2776611 2777081 . + . gene_id "RvY_09259"; transcript_id "RvY_09259.1"; Scaffold004 rebuild exon 2777151 2777636 . + . gene_id "RvY_09259"; transcript_id "RvY_09259.1"; Scaffold004 rebuild exon 2777700 2777908 . + . gene_id "RvY_09259"; transcript_id "RvY_09259.1"; Scaffold004 rebuild transcript 2779106 2782378 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; gene_name "glpA"; annotation "Glycerol-3-phosphate dehydrogenase, mitochondrial"; Pfam "[efhand] EF hand|[FAD_oxidored] FAD dependent oxidoreductase|[DAO] FAD dependent oxidoreductase|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Glycerol-3-phosphate dehydrogenase [Energy production and conversion]"; EC "EC1.1.5.3"; KO "K00111"; similar_genes "GPDM_MOUSE(e-value:2.1e-85;bit-score:313.0)"; Scaffold004 rebuild exon 2779106 2779216 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2779331 2779499 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2779556 2779680 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2779755 2779852 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2779952 2780115 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2780177 2780338 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2780560 2781110 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2781236 2781634 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2781695 2781880 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2782035 2782099 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2782167 2782200 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild exon 2782265 2782378 . + . gene_id "RvY_09260"; transcript_id "RvY_09260.1"; Scaffold004 rebuild transcript 2782261 2782479 . - . gene_id "RvY_09261"; transcript_id "RvY_09261.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2782261 2782479 . - . gene_id "RvY_09261"; transcript_id "RvY_09261.1"; Scaffold004 rebuild transcript 2784646 2785131 . - . gene_id "RvY_09262"; transcript_id "RvY_09262.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2784646 2785131 . - . gene_id "RvY_09262"; transcript_id "RvY_09262.1"; Scaffold004 rebuild transcript 2786392 2792507 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; gene_name "DENN"; annotation "putative DENN domain-containing protein 5B"; Pfam "[RUN]|[PLAT] PLAT/LH2 domain|[DENN] DENN (AEX-3) domain|[uDENN]|[dDENN]"; CDD "Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity."; similar_genes "DEN5B_MOUSE(e-value:2.7e-28;bit-score:123.0)"; Scaffold004 rebuild exon 2786392 2786613 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2786693 2786863 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2787034 2787427 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2787501 2787626 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2787714 2787892 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2788049 2788567 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2788633 2788700 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2788767 2789087 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2789160 2789343 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2789424 2789579 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2789657 2789750 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2789909 2789944 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2790249 2790362 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2790531 2790654 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2790730 2790858 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2790929 2791050 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2791117 2791378 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2791465 2791655 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2791721 2791803 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2791881 2792004 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2792083 2792248 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild exon 2792318 2792507 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.1"; Scaffold004 rebuild transcript 2786392 2792507 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; gene_name "DENN"; annotation "putative DENN domain-containing protein 5B"; Pfam "[RUN]|[PLAT] PLAT/LH2 domain|[DENN] DENN (AEX-3) domain|[uDENN]|[dDENN]"; CDD "Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity."; similar_genes "DEN5B_MOUSE(e-value:2.7e-28;bit-score:123.0)"; Scaffold004 rebuild exon 2786392 2786613 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2786693 2786863 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2787034 2787427 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2787501 2787626 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2787714 2787892 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2788049 2788567 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2788633 2788700 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2788767 2789087 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2789160 2789343 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2789424 2789579 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2789657 2789750 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2790249 2790362 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2790531 2790654 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2790730 2790858 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2790929 2791050 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2791117 2791378 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2791465 2791655 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2791721 2791803 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2791881 2792004 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2792083 2792248 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild exon 2792318 2792507 . + . gene_id "RvY_09263"; transcript_id "RvY_09263.2"; Scaffold004 rebuild transcript 2792747 2798005 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; gene_name "MYO3"; annotation "putative Myosin-IIIb"; Pfam "[Pkinase] Protein kinase domain|[Myosin_head] Myosin head (motor domain)|[IQ] IQ calmodulin-binding motif"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; EC "EC2.7.11.1"; KO "K08834"; similar_genes "MYO3B_HUMAN(e-value:1.8e-33;bit-score:140.0)"; Scaffold004 rebuild exon 2792747 2793672 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2793731 2793893 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2793956 2794073 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2794133 2794282 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2794373 2794728 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2794802 2795098 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2795192 2795282 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2795352 2795577 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2795646 2795998 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2796277 2796403 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2796545 2796620 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2796704 2796787 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2796845 2796949 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2797016 2797132 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2797191 2797367 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2797439 2797529 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2797599 2797874 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild exon 2797995 2798005 . - . gene_id "RvY_09264"; transcript_id "RvY_09264.1"; Scaffold004 rebuild transcript 2800275 2801283 . + . gene_id "RvY_09265"; transcript_id "RvY_09265.1"; annotation "hypothetical protein."; Pfam "[DUF1510]"; Scaffold004 rebuild exon 2800275 2800400 . + . gene_id "RvY_09265"; transcript_id "RvY_09265.1"; Scaffold004 rebuild exon 2800951 2801283 . + . gene_id "RvY_09265"; transcript_id "RvY_09265.1"; Scaffold004 rebuild transcript 2801980 2804237 . + . gene_id "RvY_09266"; transcript_id "RvY_09266.1"; gene_name "APC7"; annotation "anaphase-promoting complex subunit 7"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_8] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; KO "K03354"; Scaffold004 rebuild exon 2801980 2802280 . + . gene_id "RvY_09266"; transcript_id "RvY_09266.1"; Scaffold004 rebuild exon 2802436 2802881 . + . gene_id "RvY_09266"; transcript_id "RvY_09266.1"; Scaffold004 rebuild exon 2802956 2803243 . + . gene_id "RvY_09266"; transcript_id "RvY_09266.1"; Scaffold004 rebuild exon 2803322 2803697 . + . gene_id "RvY_09266"; transcript_id "RvY_09266.1"; Scaffold004 rebuild exon 2803885 2804237 . + . gene_id "RvY_09266"; transcript_id "RvY_09266.1"; Scaffold004 rebuild transcript 2805135 2810895 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "(1)[cNMP_binding] Cyclic nucleotide-binding domain|[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; similar_genes "NHX7_ARATH(e-value:4.8e-17;bit-score:86.0)"; Scaffold004 rebuild exon 2805135 2805336 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2805420 2805544 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2805606 2805738 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2806175 2806248 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2806366 2806399 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2806462 2806491 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2806570 2806686 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2806761 2807031 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2807104 2807155 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2807228 2807319 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2807394 2807497 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2807586 2807659 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2807768 2807849 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2807924 2808090 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2808152 2808466 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2808536 2808782 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2808851 2808891 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2808981 2809187 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2809261 2809611 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2809678 2809794 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2809875 2809973 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2810049 2810192 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2810255 2810383 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2810475 2810678 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild exon 2810767 2810895 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.1"; Scaffold004 rebuild transcript 2805135 2808814 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "(1)[cNMP_binding] Cyclic nucleotide-binding domain|[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; similar_genes "NHX7_ARATH(e-value:4.8e-17;bit-score:86.0)"; Scaffold004 rebuild exon 2805135 2805336 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2805420 2805544 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2805606 2805738 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2806175 2806248 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2806366 2806399 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2806462 2806491 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2806570 2806686 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2806761 2807031 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2807104 2807155 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2807228 2807319 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2807394 2807497 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2807586 2807659 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2807768 2807849 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2807924 2808090 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2808152 2808466 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild exon 2808536 2808814 . + . gene_id "RvY_09267"; transcript_id "RvY_09267.2"; Scaffold004 rebuild transcript 2811800 2817298 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; similar_genes "NHX7_ARATH(e-value:2.8e-17;bit-score:86.0)"; Scaffold004 rebuild exon 2811800 2812022 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2812099 2812143 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2812214 2812293 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2812426 2812558 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2812630 2812703 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2812783 2812846 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2812926 2813042 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2813154 2813224 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2813297 2813496 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2813567 2813710 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2813792 2813969 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2814038 2814119 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2814176 2814345 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2814414 2814589 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2814661 2814805 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2814888 2815199 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2815273 2815479 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2815576 2815777 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2815836 2815984 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2816053 2816172 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2816289 2816396 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2816462 2816605 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2816688 2816816 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2816891 2817100 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild exon 2817182 2817298 . + . gene_id "RvY_09268"; transcript_id "RvY_09268.1"; Scaffold004 rebuild transcript 2817496 2819585 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; annotation "hypothetical protein."; Pfam "[Trp_Tyr_perm] Tryptophan/tyrosine permease family|[Aa_trans] Transmembrane amino acid transporter protein"; similar_genes "TM104_CAEEL(e-value:1.4e-16;bit-score:84.0)"; Scaffold004 rebuild exon 2817496 2818284 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2818341 2818406 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2818491 2818593 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2818654 2818753 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2818829 2818859 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2818921 2819043 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2819136 2819232 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2819323 2819444 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild exon 2819538 2819585 . - . gene_id "RvY_09269"; transcript_id "RvY_09269.1"; Scaffold004 rebuild transcript 2819241 2819420 . + . gene_id "RvY_09270"; transcript_id "RvY_09270.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2819241 2819420 . + . gene_id "RvY_09270"; transcript_id "RvY_09270.1"; Scaffold004 rebuild transcript 2820133 2820705 . + . gene_id "RvY_09271"; transcript_id "RvY_09271.1"; annotation "hypothetical protein."; Pfam "[DUF1712] Fungal domain of unknown function (DUF1712)"; Scaffold004 rebuild exon 2820133 2820273 . + . gene_id "RvY_09271"; transcript_id "RvY_09271.1"; Scaffold004 rebuild exon 2820337 2820434 . + . gene_id "RvY_09271"; transcript_id "RvY_09271.1"; Scaffold004 rebuild exon 2820525 2820705 . + . gene_id "RvY_09271"; transcript_id "RvY_09271.1"; Scaffold004 rebuild transcript 2820826 2822499 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; annotation "hypothetical protein."; Pfam "[DUF1712] Fungal domain of unknown function (DUF1712)"; Scaffold004 rebuild exon 2820826 2820834 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2820950 2821033 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2821102 2821232 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2821293 2821337 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2821436 2821576 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2821647 2821813 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2821898 2822156 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2822218 2822345 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild exon 2822441 2822499 . + . gene_id "RvY_09272"; transcript_id "RvY_09272.1"; Scaffold004 rebuild transcript 2822955 2823872 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.1"; gene_name "(1)DHDDS(2)CIS_IPPS"; annotation "(1)putative Dehydrodolichyl diphosphate synthase(2)hypothetical protein."; Pfam "[Prenyltransf] Putative undecaprenyl diphosphate synthase"; CDD "Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity."; EC "EC2.5.1.-"; KO "(1)K11778"; similar_genes "(1)DHDDS_HUMAN(e-value:2.0e-26;bit-score:117.0)(2)DHDDS_HUMAN(e-value:1.8e-14;bit-score:77.0)"; Scaffold004 rebuild exon 2822955 2823111 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.1"; Scaffold004 rebuild exon 2823195 2823296 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.1"; Scaffold004 rebuild exon 2823354 2823470 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.1"; Scaffold004 rebuild exon 2823544 2823872 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.1"; Scaffold004 rebuild transcript 2822773 2823367 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.2"; gene_name "(1)DHDDS(2)CIS_IPPS"; annotation "(1)putative Dehydrodolichyl diphosphate synthase(2)hypothetical protein."; Pfam "[Prenyltransf] Putative undecaprenyl diphosphate synthase"; CDD "Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity."; EC "EC2.5.1.-"; KO "(1)K11778"; similar_genes "(1)DHDDS_HUMAN(e-value:2.0e-26;bit-score:117.0)(2)DHDDS_HUMAN(e-value:1.8e-14;bit-score:77.0)"; Scaffold004 rebuild exon 2822773 2822904 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.2"; Scaffold004 rebuild exon 2822997 2823111 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.2"; Scaffold004 rebuild exon 2823195 2823296 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.2"; Scaffold004 rebuild exon 2823354 2823367 . - . gene_id "RvY_09273"; transcript_id "RvY_09273.2"; Scaffold004 rebuild transcript 2824375 2825574 . + . gene_id "RvY_09274"; transcript_id "RvY_09274.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2824375 2824560 . + . gene_id "RvY_09274"; transcript_id "RvY_09274.1"; Scaffold004 rebuild exon 2824630 2824732 . + . gene_id "RvY_09274"; transcript_id "RvY_09274.1"; Scaffold004 rebuild exon 2824823 2825574 . + . gene_id "RvY_09274"; transcript_id "RvY_09274.1"; Scaffold004 rebuild transcript 2826362 2827192 . + . gene_id "RvY_09275"; transcript_id "RvY_09275.1"; gene_name "NFYB"; annotation "putative Nuclear transcription factor Y subunit beta"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone|[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes."; KO "K08065"; similar_genes "NFYB_PETMA(e-value:2.9e-38;bit-score:156.0)"; Scaffold004 rebuild exon 2826362 2826451 . + . gene_id "RvY_09275"; transcript_id "RvY_09275.1"; Scaffold004 rebuild exon 2826612 2826677 . + . gene_id "RvY_09275"; transcript_id "RvY_09275.1"; Scaffold004 rebuild exon 2826792 2826912 . + . gene_id "RvY_09275"; transcript_id "RvY_09275.1"; Scaffold004 rebuild exon 2826991 2827067 . + . gene_id "RvY_09275"; transcript_id "RvY_09275.1"; Scaffold004 rebuild exon 2827163 2827192 . + . gene_id "RvY_09275"; transcript_id "RvY_09275.1"; Scaffold004 rebuild transcript 2827608 2829841 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; gene_name "OPN4"; annotation "opsin 4 (melanopsin)"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04255"; similar_genes "(1)OPS3_DROME(e-value:2.7e-13;bit-score:73.0)(2)OPN4B_XENLA(e-value:2.2e-19;bit-score:93.0)"; Scaffold004 rebuild exon 2827608 2828446 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild exon 2828526 2828643 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild exon 2828725 2828845 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild exon 2828946 2828991 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild exon 2829055 2829117 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild exon 2829196 2829329 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild exon 2829429 2829841 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.1"; Scaffold004 rebuild transcript 2827608 2829682 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; gene_name "OPN4"; annotation "opsin 4 (melanopsin)"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04255"; similar_genes "(1)OPS3_DROME(e-value:2.7e-13;bit-score:73.0)(2)OPN4B_XENLA(e-value:2.2e-19;bit-score:93.0)"; Scaffold004 rebuild exon 2827608 2828446 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild exon 2828526 2828643 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild exon 2828725 2828845 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild exon 2828946 2828976 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild exon 2829055 2829117 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild exon 2829196 2829329 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild exon 2829429 2829682 . - . gene_id "RvY_09276"; transcript_id "RvY_09276.2"; Scaffold004 rebuild transcript 2830735 2835274 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2830735 2830932 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2830999 2831227 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2831309 2831439 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2831531 2832055 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2832135 2832303 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2832406 2832575 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2832648 2832816 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2832893 2833058 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2833139 2833589 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2833676 2834311 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2834383 2834496 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2834558 2834702 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2834791 2834932 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2835002 2835098 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild exon 2835191 2835274 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.1"; Scaffold004 rebuild transcript 2830735 2835274 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2830735 2830932 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2830999 2831227 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2831309 2831439 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2831531 2832055 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2832135 2832303 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2832406 2832530 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2832648 2832816 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2832893 2833058 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2833139 2833589 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2833676 2834311 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2834383 2834496 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2834558 2834702 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2834791 2834932 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2835002 2835098 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild exon 2835191 2835274 . - . gene_id "RvY_09277"; transcript_id "RvY_09277.2"; Scaffold004 rebuild transcript 2836092 2836990 . - . gene_id "RvY_09278"; transcript_id "RvY_09278.1"; gene_name "CSP_CDS"; annotation "hypothetical protein."; Pfam "[CSD] 'Cold-shock' DNA-binding domain"; CDD "Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription."; similar_genes "CHSP1_MOUSE(e-value:4.4e-24;bit-score:109.0)"; Scaffold004 rebuild exon 2836092 2836263 . - . gene_id "RvY_09278"; transcript_id "RvY_09278.1"; Scaffold004 rebuild exon 2836344 2836395 . - . gene_id "RvY_09278"; transcript_id "RvY_09278.1"; Scaffold004 rebuild exon 2836559 2836629 . - . gene_id "RvY_09278"; transcript_id "RvY_09278.1"; Scaffold004 rebuild exon 2836833 2836990 . - . gene_id "RvY_09278"; transcript_id "RvY_09278.1"; Scaffold004 rebuild transcript 2837766 2840637 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; gene_name "ADCK"; annotation "putative Uncharacterized aarF domain-containing protein kinase 1"; Pfam "[ABC1] ABC1 family"; CDD "Predicted unusual protein kinase [General function prediction only]"; EC "EC2.7.11.-"; KO "K08869"; similar_genes "ADCK1_XENTR(e-value:1.5e-37;bit-score:154.0)"; Scaffold004 rebuild exon 2837766 2837909 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2838019 2838108 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2838270 2838335 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2838400 2838537 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2838607 2838678 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2838737 2838769 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2838846 2838984 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839057 2839130 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839202 2839240 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839309 2839386 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839474 2839530 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839628 2839646 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839709 2839779 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2839860 2840057 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2840148 2840194 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2840267 2840390 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild exon 2840479 2840637 . + . gene_id "RvY_09279"; transcript_id "RvY_09279.1"; Scaffold004 rebuild transcript 2840824 2841623 . + . gene_id "RvY_09280"; transcript_id "RvY_09280.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2840824 2840884 . + . gene_id "RvY_09280"; transcript_id "RvY_09280.1"; Scaffold004 rebuild exon 2840990 2841201 . + . gene_id "RvY_09280"; transcript_id "RvY_09280.1"; Scaffold004 rebuild exon 2841265 2841406 . + . gene_id "RvY_09280"; transcript_id "RvY_09280.1"; Scaffold004 rebuild exon 2841495 2841529 . + . gene_id "RvY_09280"; transcript_id "RvY_09280.1"; Scaffold004 rebuild exon 2841603 2841623 . + . gene_id "RvY_09280"; transcript_id "RvY_09280.1"; Scaffold004 rebuild transcript 2842049 2842402 . + . gene_id "RvY_09281"; transcript_id "RvY_09281.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2842049 2842402 . + . gene_id "RvY_09281"; transcript_id "RvY_09281.1"; Scaffold004 rebuild transcript 2841716 2842127 . + . gene_id "RvY_09281"; transcript_id "RvY_09281.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2841716 2841830 . + . gene_id "RvY_09281"; transcript_id "RvY_09281.2"; Scaffold004 rebuild exon 2841910 2842127 . + . gene_id "RvY_09281"; transcript_id "RvY_09281.2"; Scaffold004 rebuild transcript 2842194 2846563 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; annotation "hypothetical protein."; Pfam "[Spond_N] Spondin_N|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain|[Reeler]|[TSP_1] Thrombospondin type 1 domain"; Scaffold004 rebuild exon 2842194 2842396 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2842475 2842714 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2842857 2842964 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2843068 2843108 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2843201 2843330 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2843410 2843556 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2843625 2843845 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2843911 2844115 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2844193 2844427 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2844505 2844635 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2844738 2844827 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2844916 2844949 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2845034 2845185 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2845401 2845529 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2845595 2845668 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2845814 2845947 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2846116 2846228 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild exon 2846332 2846563 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.1"; Scaffold004 rebuild transcript 2842194 2846563 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; annotation "hypothetical protein."; Pfam "[Spond_N] Spondin_N|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain|[Reeler]|[TSP_1] Thrombospondin type 1 domain"; Scaffold004 rebuild exon 2842194 2842396 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2842475 2842714 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2843068 2843108 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2843201 2843330 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2843410 2843556 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2843625 2843845 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2843911 2844115 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2844193 2844427 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2844505 2844635 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2844738 2844827 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2844916 2844949 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2845034 2845185 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2845401 2845529 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2845595 2845668 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2845814 2845947 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2846116 2846228 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild exon 2846332 2846563 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.2"; Scaffold004 rebuild transcript 2842801 2846563 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; annotation "hypothetical protein."; Pfam "[Spond_N] Spondin_N|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain|[Reeler]|[TSP_1] Thrombospondin type 1 domain"; Scaffold004 rebuild exon 2842801 2842964 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2843068 2843108 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2843201 2843330 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2843410 2843556 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2843625 2843845 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2843911 2844115 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2844193 2844427 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2844505 2844635 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2844738 2844827 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2844916 2844949 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2845034 2845185 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2845401 2845529 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2845595 2845668 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2845814 2845947 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2846116 2846228 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild exon 2846332 2846563 . - . gene_id "RvY_09282"; transcript_id "RvY_09282.3"; Scaffold004 rebuild transcript 2849243 2849446 . + . gene_id "RvY_09283"; transcript_id "RvY_09283.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2849243 2849446 . + . gene_id "RvY_09283"; transcript_id "RvY_09283.1"; Scaffold004 rebuild transcript 2850451 2855188 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2850451 2850600 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2850843 2851070 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2851127 2851298 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2851378 2851760 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2851865 2852058 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2852150 2852459 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2852584 2853420 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2853480 2854421 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2854505 2855015 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild exon 2855112 2855188 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.1"; Scaffold004 rebuild transcript 2851082 2855188 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2851082 2851298 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2851378 2851760 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2851865 2852058 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2852150 2852459 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2852584 2853420 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2853480 2854421 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2854505 2855015 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild exon 2855112 2855188 . - . gene_id "RvY_09284"; transcript_id "RvY_09284.2"; Scaffold004 rebuild transcript 2856261 2857337 . - . gene_id "RvY_09285"; transcript_id "RvY_09285.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 2856261 2856719 . - . gene_id "RvY_09285"; transcript_id "RvY_09285.1"; Scaffold004 rebuild exon 2856841 2857005 . - . gene_id "RvY_09285"; transcript_id "RvY_09285.1"; Scaffold004 rebuild exon 2857134 2857337 . - . gene_id "RvY_09285"; transcript_id "RvY_09285.1"; Scaffold004 rebuild transcript 2858624 2861216 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; gene_name "INTS5"; annotation "integrator complex subunit 5"; KO "K13142"; Scaffold004 rebuild exon 2858624 2858716 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild exon 2858782 2859354 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild exon 2859414 2860050 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild exon 2860219 2860550 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild exon 2860615 2860719 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild exon 2860871 2860952 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild exon 2861029 2861216 . + . gene_id "RvY_09286"; transcript_id "RvY_09286.1"; Scaffold004 rebuild transcript 2861887 2862363 . + . gene_id "RvY_09287"; transcript_id "RvY_09287.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2861887 2861992 . + . gene_id "RvY_09287"; transcript_id "RvY_09287.1"; Scaffold004 rebuild exon 2862098 2862363 . + . gene_id "RvY_09287"; transcript_id "RvY_09287.1"; Scaffold004 rebuild transcript 2864461 2865188 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.1"; gene_name "RERG_RasL11_like"; annotation "hypothetical protein."; Pfam "(1)[Miro] Miro-like protein|[Ras] Ras family"; CDD "RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a"; Scaffold004 rebuild exon 2864461 2864538 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.1"; Scaffold004 rebuild exon 2864652 2864832 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.1"; Scaffold004 rebuild exon 2864899 2865188 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.1"; Scaffold004 rebuild transcript 2863513 2864746 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.2"; gene_name "RERG_RasL11_like"; annotation "hypothetical protein."; Pfam "(1)[Miro] Miro-like protein|[Ras] Ras family"; CDD "RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a"; Scaffold004 rebuild exon 2863513 2863690 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.2"; Scaffold004 rebuild exon 2863813 2863869 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.2"; Scaffold004 rebuild exon 2864456 2864538 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.2"; Scaffold004 rebuild exon 2864624 2864746 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.2"; Scaffold004 rebuild transcript 2864784 2865188 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.3"; gene_name "RERG_RasL11_like"; annotation "hypothetical protein."; Pfam "(1)[Miro] Miro-like protein|[Ras] Ras family"; CDD "RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a"; Scaffold004 rebuild exon 2864784 2865188 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.3"; Scaffold004 rebuild transcript 2864784 2865188 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.4"; gene_name "RERG_RasL11_like"; annotation "hypothetical protein."; Pfam "(1)[Miro] Miro-like protein|[Ras] Ras family"; CDD "RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a"; Scaffold004 rebuild exon 2864784 2864832 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.4"; Scaffold004 rebuild exon 2864899 2865188 . + . gene_id "RvY_09288"; transcript_id "RvY_09288.4"; Scaffold004 rebuild transcript 2866207 2867942 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; gene_name "ACADSB"; annotation "Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial"; Pfam "[Acyl-CoA_dh_N] Acyl-CoA dehydrogenase, N-terminal domain|[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_2] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers."; EC "EC1.3.99.-|EC1.3.99.12"; KO "K09478"; similar_genes "ACDSB_PONAB(e-value:6.3e-138;bit-score:487.0)"; Scaffold004 rebuild exon 2866207 2866396 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild exon 2866473 2866780 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild exon 2866840 2866972 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild exon 2867083 2867120 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild exon 2867197 2867271 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild exon 2867331 2867474 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild exon 2867532 2867942 . + . gene_id "RvY_09289"; transcript_id "RvY_09289.1"; Scaffold004 rebuild transcript 2868645 2870037 . + . gene_id "RvY_09290"; transcript_id "RvY_09290.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2868645 2869153 . + . gene_id "RvY_09290"; transcript_id "RvY_09290.1"; Scaffold004 rebuild exon 2869812 2870037 . + . gene_id "RvY_09290"; transcript_id "RvY_09290.1"; Scaffold004 rebuild transcript 2870646 2871304 . - . gene_id "RvY_09291"; transcript_id "RvY_09291.1"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold004 rebuild exon 2870646 2870802 . - . gene_id "RvY_09291"; transcript_id "RvY_09291.1"; Scaffold004 rebuild exon 2870877 2870986 . - . gene_id "RvY_09291"; transcript_id "RvY_09291.1"; Scaffold004 rebuild exon 2871067 2871183 . - . gene_id "RvY_09291"; transcript_id "RvY_09291.1"; Scaffold004 rebuild exon 2871260 2871304 . - . gene_id "RvY_09291"; transcript_id "RvY_09291.1"; Scaffold004 rebuild transcript 2871429 2873800 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold004 rebuild exon 2871429 2871476 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2871551 2871719 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2871808 2872099 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2872343 2872718 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2872795 2872862 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2872932 2873025 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2873104 2873385 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2873464 2873587 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild exon 2873700 2873800 . - . gene_id "RvY_09292"; transcript_id "RvY_09292.1"; Scaffold004 rebuild transcript 2874051 2874430 . - . gene_id "RvY_09293"; transcript_id "RvY_09293.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2874051 2874199 . - . gene_id "RvY_09293"; transcript_id "RvY_09293.1"; Scaffold004 rebuild exon 2874274 2874430 . - . gene_id "RvY_09293"; transcript_id "RvY_09293.1"; Scaffold004 rebuild transcript 2877723 2883525 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; annotation "putative Furin-like protease 1, isoforms 1/1-X/2"; Pfam "[Peptidase_S8] Subtilase family"; EC "EC3.4.21.75"; KO "K14647"; similar_genes "(1)FUR11_DROME(e-value:9.3e-50;bit-score:194.0)(2)FUR11_DROME(e-value:3.1e-46;bit-score:183.0)"; Scaffold004 rebuild exon 2877723 2878091 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild exon 2881807 2881905 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild exon 2882762 2882873 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild exon 2882948 2882970 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild exon 2883041 2883235 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild exon 2883332 2883431 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild exon 2883503 2883525 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.1"; Scaffold004 rebuild transcript 2877723 2883445 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; annotation "putative Furin-like protease 1, isoforms 1/1-X/2"; Pfam "[Peptidase_S8] Subtilase family"; EC "EC3.4.21.75"; KO "K14647"; similar_genes "(1)FUR11_DROME(e-value:9.3e-50;bit-score:194.0)(2)FUR11_DROME(e-value:3.1e-46;bit-score:183.0)"; Scaffold004 rebuild exon 2877723 2878091 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; Scaffold004 rebuild exon 2881807 2881905 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; Scaffold004 rebuild exon 2882762 2882873 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; Scaffold004 rebuild exon 2882948 2882970 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; Scaffold004 rebuild exon 2883041 2883235 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; Scaffold004 rebuild exon 2883332 2883445 . + . gene_id "RvY_09294"; transcript_id "RvY_09294.2"; Scaffold004 rebuild transcript 2878957 2879196 . - . gene_id "RvY_09295"; transcript_id "RvY_09295.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2878957 2879196 . - . gene_id "RvY_09295"; transcript_id "RvY_09295.1"; Scaffold004 rebuild transcript 2884241 2887342 . + . gene_id "RvY_09296"; transcript_id "RvY_09296.1"; gene_name "P_proprotein"; annotation "putative Furin-1"; Pfam "[Peptidase_S8] Subtilase family|[P_proprotein] Proprotein convertase P-domain"; CDD "Proprotein convertase P-domain. A unique feature of the eukaryotic subtilisin-like proprotein convertases is the presence of an additional highly conserved sequence of approximately 150 residues (P domain) located immediately downstream of the catalytic domain."; EC "EC3.4.21.75"; similar_genes "FURI1_XENLA(e-value:3.3e-39;bit-score:159.0)"; Scaffold004 rebuild exon 2884241 2884608 . + . gene_id "RvY_09296"; transcript_id "RvY_09296.1"; Scaffold004 rebuild exon 2884676 2884839 . + . gene_id "RvY_09296"; transcript_id "RvY_09296.1"; Scaffold004 rebuild exon 2884947 2885093 . + . gene_id "RvY_09296"; transcript_id "RvY_09296.1"; Scaffold004 rebuild exon 2885178 2885360 . + . gene_id "RvY_09296"; transcript_id "RvY_09296.1"; Scaffold004 rebuild exon 2887158 2887342 . + . gene_id "RvY_09296"; transcript_id "RvY_09296.1"; Scaffold004 rebuild transcript 2888350 2889242 . + . gene_id "RvY_09297"; transcript_id "RvY_09297.1"; annotation "hypothetical protein."; similar_genes "SER1_GALME(e-value:2.6e-09;bit-score:60.0)"; Scaffold004 rebuild exon 2888350 2888455 . + . gene_id "RvY_09297"; transcript_id "RvY_09297.1"; Scaffold004 rebuild exon 2888526 2888784 . + . gene_id "RvY_09297"; transcript_id "RvY_09297.1"; Scaffold004 rebuild exon 2889062 2889242 . + . gene_id "RvY_09297"; transcript_id "RvY_09297.1"; Scaffold004 rebuild transcript 2890942 2897034 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "MABP1_MOUSE(e-value:3.2e-16;bit-score:83.0)"; Scaffold004 rebuild exon 2890942 2891058 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2891145 2891420 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2891495 2891701 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2891770 2892475 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2892561 2893440 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2893618 2894192 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2894266 2894724 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2895413 2895499 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2896128 2896717 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild exon 2896807 2897034 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.1"; Scaffold004 rebuild transcript 2890942 2897034 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "MABP1_MOUSE(e-value:3.2e-16;bit-score:83.0)"; Scaffold004 rebuild exon 2890942 2891058 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2891145 2891239 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2891306 2891420 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2891495 2891701 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2891770 2892475 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2892561 2893440 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2893618 2894192 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2894266 2894724 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2895413 2895499 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2896128 2896717 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild exon 2896807 2897034 . + . gene_id "RvY_09298"; transcript_id "RvY_09298.2"; Scaffold004 rebuild transcript 2898364 2899411 . + . gene_id "RvY_09299"; transcript_id "RvY_09299.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2898364 2898768 . + . gene_id "RvY_09299"; transcript_id "RvY_09299.1"; Scaffold004 rebuild exon 2898878 2899099 . + . gene_id "RvY_09299"; transcript_id "RvY_09299.1"; Scaffold004 rebuild exon 2899177 2899320 . + . gene_id "RvY_09299"; transcript_id "RvY_09299.1"; Scaffold004 rebuild exon 2899379 2899411 . + . gene_id "RvY_09299"; transcript_id "RvY_09299.1"; Scaffold004 rebuild transcript 2899652 2900565 . - . gene_id "RvY_09300"; transcript_id "RvY_09300.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2899652 2899856 . - . gene_id "RvY_09300"; transcript_id "RvY_09300.1"; Scaffold004 rebuild exon 2899927 2900125 . - . gene_id "RvY_09300"; transcript_id "RvY_09300.1"; Scaffold004 rebuild exon 2900193 2900242 . - . gene_id "RvY_09300"; transcript_id "RvY_09300.1"; Scaffold004 rebuild exon 2900324 2900565 . - . gene_id "RvY_09300"; transcript_id "RvY_09300.1"; Scaffold004 rebuild transcript 2901608 2904420 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2901608 2901947 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2902008 2902328 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2902413 2902486 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2902578 2902636 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2902737 2903193 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2903273 2903495 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2903595 2904049 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild exon 2904109 2904420 . + . gene_id "RvY_09301"; transcript_id "RvY_09301.1"; Scaffold004 rebuild transcript 2905131 2905490 . + . gene_id "RvY_09302"; transcript_id "RvY_09302.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2905131 2905490 . + . gene_id "RvY_09302"; transcript_id "RvY_09302.1"; Scaffold004 rebuild transcript 2905668 2907771 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2905668 2905805 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild exon 2905879 2905944 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild exon 2906023 2906272 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild exon 2906442 2906886 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild exon 2906957 2907064 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild exon 2907266 2907422 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild exon 2907496 2907771 . + . gene_id "RvY_09303"; transcript_id "RvY_09303.1"; Scaffold004 rebuild transcript 2908112 2912266 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; annotation "putative Oxysterol-binding protein-related protein 8"; Pfam "[PH]|[Oxysterol_BP] Oxysterol-binding protein"; similar_genes "OSBL8_HUMAN(e-value:1.5e-39;bit-score:160.0)"; Scaffold004 rebuild exon 2908112 2908371 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2908429 2908685 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2908763 2908945 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2909123 2909214 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2909458 2909633 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2909715 2909849 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2909917 2910013 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2910114 2910215 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2910276 2910357 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2910437 2910618 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2910677 2910798 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2910914 2911156 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2911244 2911360 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2911525 2911624 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2911727 2912061 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild exon 2912158 2912266 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.1"; Scaffold004 rebuild transcript 2908388 2912266 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; annotation "putative Oxysterol-binding protein-related protein 8"; Pfam "[PH]|[Oxysterol_BP] Oxysterol-binding protein"; similar_genes "OSBL8_HUMAN(e-value:1.5e-39;bit-score:160.0)"; Scaffold004 rebuild exon 2908388 2908685 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2908763 2908945 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2909123 2909214 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2909458 2909633 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2909715 2909849 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2909917 2910013 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2910114 2910215 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2910276 2910357 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2910437 2910618 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2910677 2910798 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2910914 2911156 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2911244 2911360 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2911525 2911624 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2911727 2912061 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild exon 2912158 2912266 . - . gene_id "RvY_09304"; transcript_id "RvY_09304.2"; Scaffold004 rebuild transcript 2913635 2914586 . + . gene_id "RvY_09305"; transcript_id "RvY_09305.1"; annotation "hypothetical protein."; Pfam "[Tmemb_9] TMEM9"; Scaffold004 rebuild exon 2913635 2913691 . + . gene_id "RvY_09305"; transcript_id "RvY_09305.1"; Scaffold004 rebuild exon 2913884 2914111 . + . gene_id "RvY_09305"; transcript_id "RvY_09305.1"; Scaffold004 rebuild exon 2914191 2914334 . + . gene_id "RvY_09305"; transcript_id "RvY_09305.1"; Scaffold004 rebuild exon 2914428 2914586 . + . gene_id "RvY_09305"; transcript_id "RvY_09305.1"; Scaffold004 rebuild transcript 2915440 2916927 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; gene_name "thyA"; annotation "Thymidylate synthase"; Pfam "[Thymidylat_synt] Thymidylate synthase"; CDD "bifunctional dihydrofolate reductase-thymidylate synthase; Provisional"; EC "EC2.1.1.45"; KO "K00560"; similar_genes "TYSY_MOUSE(e-value:4.2e-105;bit-score:378.0)"; Scaffold004 rebuild exon 2915440 2915577 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild exon 2915656 2915802 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild exon 2915879 2915979 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild exon 2916049 2916219 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild exon 2916327 2916506 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild exon 2916588 2916715 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild exon 2916791 2916927 . - . gene_id "RvY_09306"; transcript_id "RvY_09306.1"; Scaffold004 rebuild transcript 2918412 2920559 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; gene_name "WNT7"; annotation "putative Protein Wnt-7b"; Pfam "[wnt] wnt family"; KO "K00572"; similar_genes "WNT7B_HUMAN(e-value:6.8e-27;bit-score:118.0)"; Scaffold004 rebuild exon 2918412 2918740 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; Scaffold004 rebuild exon 2918981 2919122 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; Scaffold004 rebuild exon 2919343 2919466 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; Scaffold004 rebuild exon 2919544 2919621 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; Scaffold004 rebuild exon 2919824 2920155 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; Scaffold004 rebuild exon 2920230 2920559 . + . gene_id "RvY_09307"; transcript_id "RvY_09307.1"; Scaffold004 rebuild transcript 2920889 2922013 . - . gene_id "RvY_09308"; transcript_id "RvY_09308.1"; gene_name "USE1"; annotation "unconventional SNARE in the endoplasmic reticulum protein 1"; Pfam "[Use1] Membrane fusion protein Use1"; KO "K08507"; Scaffold004 rebuild exon 2920889 2921097 . - . gene_id "RvY_09308"; transcript_id "RvY_09308.1"; Scaffold004 rebuild exon 2921212 2921413 . - . gene_id "RvY_09308"; transcript_id "RvY_09308.1"; Scaffold004 rebuild exon 2921510 2921653 . - . gene_id "RvY_09308"; transcript_id "RvY_09308.1"; Scaffold004 rebuild exon 2921714 2922013 . - . gene_id "RvY_09308"; transcript_id "RvY_09308.1"; Scaffold004 rebuild transcript 2920959 2921207 . + . gene_id "RvY_09309"; transcript_id "RvY_09309.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2920959 2921207 . + . gene_id "RvY_09309"; transcript_id "RvY_09309.1"; Scaffold004 rebuild transcript 2925387 2931884 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; gene_name "SIN3A"; annotation "putative Paired amphipathic helix protein Sin3a"; Pfam "[PAH] Paired amphipathic helix repeat|[Sin3_corepress] Sin3 family co-repressor"; CDD "Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]"; KO "K11644"; similar_genes "SIN3A_MOUSE(e-value:8.9e-27;bit-score:118.0)"; Scaffold004 rebuild exon 2925387 2925821 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2925879 2926155 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2926226 2926578 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2926826 2927538 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2927637 2928145 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2928234 2928314 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2928381 2928738 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2928898 2929264 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2929417 2930049 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2930119 2930244 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2930324 2930392 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2930479 2930844 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2930916 2931209 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild exon 2931309 2931884 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.1"; Scaffold004 rebuild transcript 2925387 2931884 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; gene_name "SIN3A"; annotation "putative Paired amphipathic helix protein Sin3a"; Pfam "[PAH] Paired amphipathic helix repeat|[Sin3_corepress] Sin3 family co-repressor"; CDD "Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]"; KO "K11644"; similar_genes "SIN3A_MOUSE(e-value:8.9e-27;bit-score:118.0)"; Scaffold004 rebuild exon 2925387 2925821 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2925879 2926155 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2926226 2926578 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2926826 2927538 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2927637 2928145 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2928234 2928314 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2928381 2928738 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2928898 2929264 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2929417 2930049 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2930119 2930244 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2930324 2930392 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2930479 2930844 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2930916 2931209 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild exon 2931336 2931884 . - . gene_id "RvY_09310"; transcript_id "RvY_09310.2"; Scaffold004 rebuild transcript 2935854 2942727 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; gene_name "ISL"; annotation "putative Insulin gene enhancer protein isl-1"; Pfam "[LIM]|[Homeobox]"; CDD "Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes"; KO "K09370"; similar_genes "ISL1_DANRE(e-value:4.5e-26;bit-score:116.0)"; Scaffold004 rebuild exon 2935854 2935899 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2936215 2936410 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2936841 2936968 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2937199 2937333 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2938557 2938909 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2938996 2939058 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2941545 2941784 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild exon 2942509 2942727 . + . gene_id "RvY_09311"; transcript_id "RvY_09311.1"; Scaffold004 rebuild transcript 2947256 2948080 . + . gene_id "RvY_09312"; transcript_id "RvY_09312.1"; gene_name "RBM8A"; annotation "putative RNA-binding protein 8A"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold004 rebuild exon 2947256 2947319 . + . gene_id "RvY_09312"; transcript_id "RvY_09312.1"; Scaffold004 rebuild exon 2947413 2947469 . + . gene_id "RvY_09312"; transcript_id "RvY_09312.1"; Scaffold004 rebuild exon 2947571 2947666 . + . gene_id "RvY_09312"; transcript_id "RvY_09312.1"; Scaffold004 rebuild exon 2947740 2947876 . + . gene_id "RvY_09312"; transcript_id "RvY_09312.1"; Scaffold004 rebuild exon 2947952 2948080 . + . gene_id "RvY_09312"; transcript_id "RvY_09312.1"; Scaffold004 rebuild transcript 2948656 2954298 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; gene_name "K01530"; annotation "Probable phospholipid-transporting ATPase IM"; Pfam "[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes."; EC "EC3.6.3.1"; KO "K01530"; similar_genes "AT8B4_HUMAN(e-value:6.4e-89;bit-score:324.0)"; Scaffold004 rebuild exon 2948656 2949091 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2949155 2949366 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2949427 2949570 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2949671 2949844 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2949945 2950168 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2950242 2950425 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2950492 2951019 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2951077 2951694 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2952054 2952210 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2952449 2952675 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2952766 2952947 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2953228 2953373 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2953470 2953675 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2953778 2953876 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2953961 2954074 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2954139 2954197 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild exon 2954262 2954298 . - . gene_id "RvY_09313"; transcript_id "RvY_09313.1"; Scaffold004 rebuild transcript 2956064 2956945 . + . gene_id "RvY_09314"; transcript_id "RvY_09314.1"; annotation "hypothetical protein."; Pfam "[Motile_Sperm] MSP (Major sperm protein) domain"; Scaffold004 rebuild exon 2956064 2956945 . + . gene_id "RvY_09314"; transcript_id "RvY_09314.1"; Scaffold004 rebuild transcript 2957716 2958473 . + . gene_id "RvY_09315"; transcript_id "RvY_09315.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2957716 2957884 . + . gene_id "RvY_09315"; transcript_id "RvY_09315.1"; Scaffold004 rebuild exon 2958403 2958473 . + . gene_id "RvY_09315"; transcript_id "RvY_09315.1"; Scaffold004 rebuild transcript 2958661 2959312 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.1"; annotation "hypothetical protein."; Pfam "[F5_F8_type_C] F5/8 type C domain"; similar_genes "NR2CA_BOVIN(e-value:1.4e-16;bit-score:84.0)"; Scaffold004 rebuild exon 2958661 2958701 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.1"; Scaffold004 rebuild exon 2958788 2958894 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.1"; Scaffold004 rebuild exon 2958954 2959105 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.1"; Scaffold004 rebuild exon 2959238 2959312 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.1"; Scaffold004 rebuild transcript 2958661 2959385 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.2"; annotation "hypothetical protein."; Pfam "[F5_F8_type_C] F5/8 type C domain"; similar_genes "NR2CA_BOVIN(e-value:1.4e-16;bit-score:84.0)"; Scaffold004 rebuild exon 2958661 2958701 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.2"; Scaffold004 rebuild exon 2958788 2958894 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.2"; Scaffold004 rebuild exon 2958954 2959105 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.2"; Scaffold004 rebuild exon 2959238 2959279 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.2"; Scaffold004 rebuild exon 2959359 2959385 . + . gene_id "RvY_09316"; transcript_id "RvY_09316.2"; Scaffold004 rebuild transcript 2960617 2962818 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; gene_name "MelB"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_2] MFS/sugar transport protein"; CDD "Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]"; similar_genes "CS028_HUMAN(e-value:2.1e-15;bit-score:80.0)"; Scaffold004 rebuild exon 2960617 2960937 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2961021 2961168 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2961263 2961366 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2961445 2961548 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2961615 2961729 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2961799 2961975 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2962060 2962245 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2962314 2962579 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild exon 2962653 2962818 . + . gene_id "RvY_09317"; transcript_id "RvY_09317.1"; Scaffold004 rebuild transcript 2961520 2961933 . - . gene_id "RvY_09318"; transcript_id "RvY_09318.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2961520 2961933 . - . gene_id "RvY_09318"; transcript_id "RvY_09318.1"; Scaffold004 rebuild transcript 2963250 2964634 . - . gene_id "RvY_09319"; transcript_id "RvY_09319.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2963250 2963393 . - . gene_id "RvY_09319"; transcript_id "RvY_09319.1"; Scaffold004 rebuild exon 2963447 2963601 . - . gene_id "RvY_09319"; transcript_id "RvY_09319.1"; Scaffold004 rebuild exon 2964166 2964331 . - . gene_id "RvY_09319"; transcript_id "RvY_09319.1"; Scaffold004 rebuild exon 2964410 2964634 . - . gene_id "RvY_09319"; transcript_id "RvY_09319.1"; Scaffold004 rebuild transcript 2965093 2965653 . + . gene_id "RvY_09320"; transcript_id "RvY_09320.1"; gene_name "grxC"; annotation "glutaredoxin 3"; Pfam "[Glutaredoxin]"; CDD "Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses."; KO "K03676"; Scaffold004 rebuild exon 2965093 2965146 . + . gene_id "RvY_09320"; transcript_id "RvY_09320.1"; Scaffold004 rebuild exon 2965207 2965380 . + . gene_id "RvY_09320"; transcript_id "RvY_09320.1"; Scaffold004 rebuild exon 2965449 2965504 . + . gene_id "RvY_09320"; transcript_id "RvY_09320.1"; Scaffold004 rebuild exon 2965587 2965653 . + . gene_id "RvY_09320"; transcript_id "RvY_09320.1"; Scaffold004 rebuild transcript 2966027 2967748 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; gene_name "K00933"; annotation "putative Creatine kinase M-type"; Pfam "[ATP-gua_PtransN] ATP:guanido phosphotransferase, N-terminal domain|[ATP-gua_Ptrans] ATP:guanido phosphotransferase, C-terminal catalytic domain"; EC "EC2.7.3.2"; KO "K00933"; similar_genes "KCRM_TORMA(e-value:6.1e-30;bit-score:129.0)"; Scaffold004 rebuild exon 2966027 2966128 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; Scaffold004 rebuild exon 2966227 2966343 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; Scaffold004 rebuild exon 2966413 2966766 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; Scaffold004 rebuild exon 2966846 2966901 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; Scaffold004 rebuild exon 2967018 2967183 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; Scaffold004 rebuild exon 2967269 2967748 . - . gene_id "RvY_09321"; transcript_id "RvY_09321.1"; Scaffold004 rebuild transcript 2970200 2971101 . - . gene_id "RvY_09322"; transcript_id "RvY_09322.1"; annotation "hypothetical protein."; Pfam "[DBD_Tnp_Hermes] Hermes transposase DNA-binding domain"; Scaffold004 rebuild exon 2970200 2970534 . - . gene_id "RvY_09322"; transcript_id "RvY_09322.1"; Scaffold004 rebuild exon 2970617 2970957 . - . gene_id "RvY_09322"; transcript_id "RvY_09322.1"; Scaffold004 rebuild exon 2971037 2971101 . - . gene_id "RvY_09322"; transcript_id "RvY_09322.1"; Scaffold004 rebuild transcript 2974262 2977890 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; annotation "hypothetical protein."; Pfam "[TORC_N] Transducer of regulated CREB activity, N terminus"; Scaffold004 rebuild exon 2974262 2974530 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2974595 2974733 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2974798 2974989 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2975071 2975331 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2975410 2975643 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2975715 2976089 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2976206 2976406 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild exon 2977783 2977890 . - . gene_id "RvY_09323"; transcript_id "RvY_09323.1"; Scaffold004 rebuild transcript 2978249 2979955 . + . gene_id "RvY_09324"; transcript_id "RvY_09324.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 2978249 2978268 . + . gene_id "RvY_09324"; transcript_id "RvY_09324.1"; Scaffold004 rebuild exon 2979082 2979214 . + . gene_id "RvY_09324"; transcript_id "RvY_09324.1"; Scaffold004 rebuild exon 2979929 2979955 . + . gene_id "RvY_09324"; transcript_id "RvY_09324.1"; Scaffold004 rebuild transcript 2986716 2987979 . - . gene_id "RvY_09325"; transcript_id "RvY_09325.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "SH3G1_RAT(e-value:7.4e-20;bit-score:95.0)"; Scaffold004 rebuild exon 2986716 2986805 . - . gene_id "RvY_09325"; transcript_id "RvY_09325.1"; Scaffold004 rebuild exon 2986874 2987238 . - . gene_id "RvY_09325"; transcript_id "RvY_09325.1"; Scaffold004 rebuild exon 2987601 2987785 . - . gene_id "RvY_09325"; transcript_id "RvY_09325.1"; Scaffold004 rebuild exon 2987852 2987979 . - . gene_id "RvY_09325"; transcript_id "RvY_09325.1"; Scaffold004 rebuild transcript 2988092 2991182 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; gene_name "SH3GL"; annotation "putative Endophilin-A3"; Pfam "[BAR]"; KO "K11247"; similar_genes "SH3G3_CHICK(e-value:1.1e-35;bit-score:148.0)"; Scaffold004 rebuild exon 2988092 2988141 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild exon 2988225 2988291 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild exon 2988480 2988613 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild exon 2988699 2988915 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild exon 2990431 2990499 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild exon 2991069 2991089 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild exon 2991159 2991182 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.1"; Scaffold004 rebuild transcript 2988202 2991182 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; gene_name "SH3GL"; annotation "putative Endophilin-A3"; Pfam "[BAR]"; KO "K11247"; similar_genes "SH3G3_CHICK(e-value:1.1e-35;bit-score:148.0)"; Scaffold004 rebuild exon 2988202 2988291 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; Scaffold004 rebuild exon 2988480 2988613 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; Scaffold004 rebuild exon 2988699 2988915 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; Scaffold004 rebuild exon 2990431 2990499 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; Scaffold004 rebuild exon 2991069 2991089 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; Scaffold004 rebuild exon 2991159 2991182 . - . gene_id "RvY_09326"; transcript_id "RvY_09326.2"; Scaffold004 rebuild transcript 2992145 2994346 . + . gene_id "RvY_09327"; transcript_id "RvY_09327.1"; gene_name "Gn_AT_II_novel"; annotation "putative Asparagine synthetase domain-containing protein 1"; Pfam "[Asn_synthase] Asparagine synthase|[GATase_7] Glutamine amidotransferase domain|[DUF3700] Aluminium induced protein|[GATase_6] Glutamine amidotransferase domain"; CDD "Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer."; similar_genes "ASND1_DANRE(e-value:2.7e-32;bit-score:136.0)"; Scaffold004 rebuild exon 2992145 2992577 . + . gene_id "RvY_09327"; transcript_id "RvY_09327.1"; Scaffold004 rebuild exon 2992665 2992745 . + . gene_id "RvY_09327"; transcript_id "RvY_09327.1"; Scaffold004 rebuild exon 2992834 2993432 . + . gene_id "RvY_09327"; transcript_id "RvY_09327.1"; Scaffold004 rebuild exon 2993539 2993959 . + . gene_id "RvY_09327"; transcript_id "RvY_09327.1"; Scaffold004 rebuild exon 2994021 2994346 . + . gene_id "RvY_09327"; transcript_id "RvY_09327.1"; Scaffold004 rebuild transcript 2994820 2997356 . + . gene_id "RvY_09328"; transcript_id "RvY_09328.1"; gene_name "KIF6_9"; annotation "Kinesin-like protein KIF6"; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward."; KO "K10397"; similar_genes "KIF6_HUMAN(e-value:2.1e-85;bit-score:313.0)"; Scaffold004 rebuild exon 2994820 2995239 . + . gene_id "RvY_09328"; transcript_id "RvY_09328.1"; Scaffold004 rebuild exon 2995380 2995847 . + . gene_id "RvY_09328"; transcript_id "RvY_09328.1"; Scaffold004 rebuild exon 2995932 2997356 . + . gene_id "RvY_09328"; transcript_id "RvY_09328.1"; Scaffold004 rebuild transcript 2997650 3001425 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; annotation "hypothetical protein."; similar_genes "DISC_DROME(e-value:3.4e-24;bit-score:109.0)"; Scaffold004 rebuild exon 2997650 2998176 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; Scaffold004 rebuild exon 2998340 2998876 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; Scaffold004 rebuild exon 2998941 2999805 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; Scaffold004 rebuild exon 2999868 3000103 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; Scaffold004 rebuild exon 3000213 3000318 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; Scaffold004 rebuild exon 3001348 3001425 . - . gene_id "RvY_09329"; transcript_id "RvY_09329.1"; Scaffold004 rebuild transcript 3002267 3002619 . - . gene_id "RvY_09330"; transcript_id "RvY_09330.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3002267 3002391 . - . gene_id "RvY_09330"; transcript_id "RvY_09330.1"; Scaffold004 rebuild exon 3002463 3002619 . - . gene_id "RvY_09330"; transcript_id "RvY_09330.1"; Scaffold004 rebuild transcript 3003175 3003375 . - . gene_id "RvY_09331"; transcript_id "RvY_09331.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3003175 3003375 . - . gene_id "RvY_09331"; transcript_id "RvY_09331.1"; Scaffold004 rebuild transcript 3003884 3005420 . - . gene_id "RvY_09332"; transcript_id "RvY_09332.1"; annotation "hypothetical protein."; Pfam "[Synaptobrevin]"; Scaffold004 rebuild exon 3003884 3004005 . - . gene_id "RvY_09332"; transcript_id "RvY_09332.1"; Scaffold004 rebuild exon 3004078 3004230 . - . gene_id "RvY_09332"; transcript_id "RvY_09332.1"; Scaffold004 rebuild exon 3004497 3004592 . - . gene_id "RvY_09332"; transcript_id "RvY_09332.1"; Scaffold004 rebuild exon 3004662 3004757 . - . gene_id "RvY_09332"; transcript_id "RvY_09332.1"; Scaffold004 rebuild exon 3004841 3005420 . - . gene_id "RvY_09332"; transcript_id "RvY_09332.1"; Scaffold004 rebuild transcript 3005921 3007878 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3005921 3006043 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3006111 3006242 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3006301 3006446 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3006524 3006584 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3006658 3007002 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3007068 3007481 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3007561 3007620 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild exon 3007687 3007878 . - . gene_id "RvY_09333"; transcript_id "RvY_09333.1"; Scaffold004 rebuild transcript 3008590 3009802 . + . gene_id "RvY_09334"; transcript_id "RvY_09334.1"; gene_name "CRYL1"; annotation "L-gulonate 3-dehydrogenase [EC:1.1.1.45]"; Pfam "[NAD_binding_2] NAD binding domain of 6-phosphogluconate dehydrogenase|[3HCDH_N] 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain|[3HCDH] 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain"; CDD "3-hydroxyacyl-CoA dehydrogenase; Validated"; EC "EC1.1.1.45"; KO "K13247"; similar_genes "CRYL1_HUMAN(e-value:5.1e-25;bit-score:112.0)"; Scaffold004 rebuild exon 3008590 3008680 . + . gene_id "RvY_09334"; transcript_id "RvY_09334.1"; Scaffold004 rebuild exon 3008772 3009012 . + . gene_id "RvY_09334"; transcript_id "RvY_09334.1"; Scaffold004 rebuild exon 3009094 3009451 . + . gene_id "RvY_09334"; transcript_id "RvY_09334.1"; Scaffold004 rebuild exon 3009515 3009802 . + . gene_id "RvY_09334"; transcript_id "RvY_09334.1"; Scaffold004 rebuild transcript 3010515 3012461 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; gene_name "CDC6"; annotation "cell division control protein 6"; Pfam "[AAA_16] AAA ATPase domain|[Cdc6_C] CDC6, C terminal|[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]"; KO "K02213"; Scaffold004 rebuild exon 3010515 3010958 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild exon 3011033 3011208 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild exon 3011270 3011379 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild exon 3011456 3011702 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild exon 3011834 3011892 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild exon 3011964 3012145 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild exon 3012240 3012461 . + . gene_id "RvY_09335"; transcript_id "RvY_09335.1"; Scaffold004 rebuild transcript 3012908 3015090 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; gene_name "PTZ00280"; annotation "Actin-related protein 3"; Pfam "[Actin]"; CDD "actin; Provisional"; similar_genes "ARP3_RAT(e-value:5.9e-217;bit-score:750.0)"; Scaffold004 rebuild exon 3012908 3013003 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3013068 3013151 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3013241 3013366 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3013428 3013520 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3013620 3013793 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3013872 3014015 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3014081 3014284 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3014358 3014468 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3014524 3014648 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3014719 3014774 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild exon 3014897 3015090 . - . gene_id "RvY_09336"; transcript_id "RvY_09336.1"; Scaffold004 rebuild transcript 3015373 3018251 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; gene_name "CWC22"; annotation "Pre-mRNA-splicing factor CWC22 homolog"; Pfam "[MA3]|[MIF4G]"; KO "K13100"; similar_genes "CWC22_DANRE(e-value:3.4e-96;bit-score:349.0)"; Scaffold004 rebuild exon 3015373 3015680 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3015788 3016010 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3016083 3016211 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3016336 3016471 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3016557 3016763 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3016832 3017124 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3017190 3017420 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3017491 3017618 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3017704 3017805 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild exon 3017882 3018251 . + . gene_id "RvY_09337"; transcript_id "RvY_09337.1"; Scaffold004 rebuild transcript 3018451 3028172 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; gene_name "DNAJC13"; annotation "DnaJ homolog subfamily C member 13"; Pfam "[DnaJ]|[DUF4339]"; CDD "DnaJ molecular chaperone homology domain."; KO "K09533"; similar_genes "DJC13_HUMAN(e-value:6.9e-203;bit-score:703.0)"; Scaffold004 rebuild exon 3018451 3018560 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3018651 3018753 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3018817 3019098 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3019341 3019520 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3019587 3019760 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3019840 3019964 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3020038 3020313 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3020438 3020798 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3020868 3021098 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3021179 3021349 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3021412 3022025 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3022300 3022778 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3022837 3023192 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3023271 3023355 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3023426 3023898 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3024062 3024676 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3024876 3025226 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3025309 3025464 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3025531 3025911 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3025979 3026061 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3026135 3026301 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3026402 3026493 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3026555 3026650 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3026721 3026787 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3026863 3027005 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3027212 3027265 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3027321 3027467 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3027536 3027577 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3027658 3027804 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3027949 3028024 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild exon 3028099 3028172 . - . gene_id "RvY_09338"; transcript_id "RvY_09338.1"; Scaffold004 rebuild transcript 3029098 3033491 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; gene_name "MSH5"; annotation "putative MutS protein homolog 5"; Pfam "[MutS_III] MutS domain III|[MutS_V] MutS domain V"; CDD "Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]"; KO "K08741"; similar_genes "MSH5_MOUSE(e-value:1.9e-37;bit-score:153.0)"; Scaffold004 rebuild exon 3029098 3029322 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3029401 3029524 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3029593 3029673 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3029730 3029879 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3029979 3030100 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3030156 3030253 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3030333 3030368 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3030441 3030463 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3030524 3030629 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3030711 3030849 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3030910 3030972 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3031056 3031133 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3031220 3031276 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3031336 3031408 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3031471 3031580 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3031658 3031738 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3031826 3032010 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3032071 3032160 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3032238 3032364 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3032459 3032608 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3032667 3032966 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3033043 3033263 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild exon 3033383 3033491 . + . gene_id "RvY_09339"; transcript_id "RvY_09339.1"; Scaffold004 rebuild transcript 3033735 3034664 . - . gene_id "RvY_09340"; transcript_id "RvY_09340.1"; gene_name "PDZ_signaling"; annotation "hypothetical protein."; Pfam "[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; Scaffold004 rebuild exon 3033735 3034664 . - . gene_id "RvY_09340"; transcript_id "RvY_09340.1"; Scaffold004 rebuild transcript 3034854 3036537 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3034854 3035207 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild exon 3035301 3035480 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild exon 3035560 3035645 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild exon 3035719 3035779 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild exon 3035883 3036180 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild exon 3036310 3036406 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild exon 3036489 3036537 . - . gene_id "RvY_09341"; transcript_id "RvY_09341.1"; Scaffold004 rebuild transcript 3037141 3037748 . - . gene_id "RvY_09342"; transcript_id "RvY_09342.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3037141 3037387 . - . gene_id "RvY_09342"; transcript_id "RvY_09342.1"; Scaffold004 rebuild exon 3037453 3037748 . - . gene_id "RvY_09342"; transcript_id "RvY_09342.1"; Scaffold004 rebuild transcript 3039583 3043068 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; gene_name "YTH1"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; CDD "Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]"; similar_genes "ZC3H6_HUMAN(e-value:2.3e-25;bit-score:113.0)"; Scaffold004 rebuild exon 3039583 3039709 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3039793 3039890 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3040209 3040421 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3040502 3041031 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3041144 3041364 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3041471 3041716 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3041803 3041927 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3042002 3042397 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild exon 3042550 3043068 . + . gene_id "RvY_09343"; transcript_id "RvY_09343.1"; Scaffold004 rebuild transcript 3043502 3044252 . - . gene_id "RvY_09344"; transcript_id "RvY_09344.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3043502 3043725 . - . gene_id "RvY_09344"; transcript_id "RvY_09344.1"; Scaffold004 rebuild exon 3043819 3043902 . - . gene_id "RvY_09344"; transcript_id "RvY_09344.1"; Scaffold004 rebuild exon 3044026 3044085 . - . gene_id "RvY_09344"; transcript_id "RvY_09344.1"; Scaffold004 rebuild exon 3044186 3044252 . - . gene_id "RvY_09344"; transcript_id "RvY_09344.1"; Scaffold004 rebuild transcript 3045492 3047056 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold004 rebuild exon 3045492 3045605 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3045702 3045798 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3045898 3045992 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3046082 3046255 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3046347 3046399 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3046464 3046635 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3046713 3046796 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3046897 3046940 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild exon 3047047 3047056 . + . gene_id "RvY_09345"; transcript_id "RvY_09345.1"; Scaffold004 rebuild transcript 3048230 3050915 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; gene_name "SNRP70"; annotation "putative U1 small nuclear ribonucleoprotein 70 kDa"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[U1snRNP70_N] U1 small nuclear ribonucleoprotein of 70kDa MW N terminal|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold004 rebuild exon 3048230 3048373 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3048461 3048523 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3048647 3048701 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3048794 3048858 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3048925 3048987 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3049174 3049255 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3049993 3050094 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3050355 3050730 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild exon 3050786 3050915 . + . gene_id "RvY_09346"; transcript_id "RvY_09346.1"; Scaffold004 rebuild transcript 3051527 3052091 . - . gene_id "RvY_09347"; transcript_id "RvY_09347.1"; gene_name "RP-L38e"; annotation "large subunit ribosomal protein L38e"; Pfam "[Ribosomal_L38e] Ribosomal L38e protein family"; KO "K02923"; similar_genes "RL38_SPOFR(e-value:1.5e-22;bit-score:104.0)"; Scaffold004 rebuild exon 3051527 3051579 . - . gene_id "RvY_09347"; transcript_id "RvY_09347.1"; Scaffold004 rebuild exon 3051691 3051813 . - . gene_id "RvY_09347"; transcript_id "RvY_09347.1"; Scaffold004 rebuild exon 3051894 3051954 . - . gene_id "RvY_09347"; transcript_id "RvY_09347.1"; Scaffold004 rebuild exon 3052089 3052091 . - . gene_id "RvY_09347"; transcript_id "RvY_09347.1"; Scaffold004 rebuild transcript 3052726 3053508 . + . gene_id "RvY_09348"; transcript_id "RvY_09348.1"; annotation "putative Vesicle transport protein GOT1A"; Pfam "[Got1] Got1/Sft2-like family"; similar_genes "GOT1A_BOVIN(e-value:1.6e-32;bit-score:137.0)"; Scaffold004 rebuild exon 3052726 3052750 . + . gene_id "RvY_09348"; transcript_id "RvY_09348.1"; Scaffold004 rebuild exon 3052820 3052911 . + . gene_id "RvY_09348"; transcript_id "RvY_09348.1"; Scaffold004 rebuild exon 3053012 3053190 . + . gene_id "RvY_09348"; transcript_id "RvY_09348.1"; Scaffold004 rebuild exon 3053290 3053371 . + . gene_id "RvY_09348"; transcript_id "RvY_09348.1"; Scaffold004 rebuild exon 3053467 3053508 . + . gene_id "RvY_09348"; transcript_id "RvY_09348.1"; Scaffold004 rebuild transcript 3054367 3055684 . + . gene_id "RvY_09349"; transcript_id "RvY_09349.1"; gene_name "ORC4"; annotation "origin recognition complex subunit 4"; Pfam "[AAA_16] AAA ATPase domain|[AAA_22] AAA domain"; CDD "Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]"; KO "K02606"; Scaffold004 rebuild exon 3054367 3055051 . + . gene_id "RvY_09349"; transcript_id "RvY_09349.1"; Scaffold004 rebuild exon 3055107 3055684 . + . gene_id "RvY_09349"; transcript_id "RvY_09349.1"; Scaffold004 rebuild transcript 3055841 3062740 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; gene_name "DDR2"; annotation "putative Discoidin domain-containing receptor 2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[F5_F8_type_C] F5/8 type C domain"; CDD "Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis."; EC "EC2.7.10.1"; KO "K05125"; similar_genes "DDR2_HUMAN(e-value:1.2e-47;bit-score:187.0)"; Scaffold004 rebuild exon 3055841 3056140 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3056207 3056441 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3056504 3056701 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3057059 3057153 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3057235 3057461 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3057533 3057794 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3057889 3058157 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3058246 3058424 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3058576 3059298 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3059899 3060004 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild exon 3062647 3062740 . - . gene_id "RvY_09350"; transcript_id "RvY_09350.1"; Scaffold004 rebuild transcript 3060640 3060870 . + . gene_id "RvY_09351"; transcript_id "RvY_09351.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3060640 3060870 . + . gene_id "RvY_09351"; transcript_id "RvY_09351.1"; Scaffold004 rebuild transcript 3067904 3068086 . - . gene_id "RvY_09352"; transcript_id "RvY_09352.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3067904 3068086 . - . gene_id "RvY_09352"; transcript_id "RvY_09352.1"; Scaffold004 rebuild transcript 3069406 3069798 . + . gene_id "RvY_09353"; transcript_id "RvY_09353.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3069406 3069798 . + . gene_id "RvY_09353"; transcript_id "RvY_09353.1"; Scaffold004 rebuild transcript 3072744 3073343 . + . gene_id "RvY_09354"; transcript_id "RvY_09354.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3072744 3072777 . + . gene_id "RvY_09354"; transcript_id "RvY_09354.1"; Scaffold004 rebuild exon 3073261 3073343 . + . gene_id "RvY_09354"; transcript_id "RvY_09354.1"; Scaffold004 rebuild transcript 3075448 3077872 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[GRIP]"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 3075448 3075612 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; Scaffold004 rebuild exon 3075694 3076563 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; Scaffold004 rebuild exon 3076636 3076734 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; Scaffold004 rebuild exon 3076846 3076959 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; Scaffold004 rebuild exon 3077106 3077716 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; Scaffold004 rebuild exon 3077785 3077872 . - . gene_id "RvY_09355"; transcript_id "RvY_09355.1"; Scaffold004 rebuild transcript 3078673 3081929 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; gene_name "DENN"; annotation "putative DENN domain-containing protein 1A"; Pfam "[DENN] DENN (AEX-3) domain|[uDENN]|[dDENN]"; CDD "Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity."; similar_genes "DEN1A_MOUSE(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 3078673 3078689 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3078753 3078817 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3078961 3079001 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3079063 3079223 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3079281 3079562 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3079658 3079756 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3079822 3079872 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3079943 3079988 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3080063 3080164 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3080248 3080354 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3080423 3080534 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3080597 3080740 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3080828 3080863 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3080930 3080986 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3081083 3081237 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3081315 3081405 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild exon 3081480 3081929 . + . gene_id "RvY_09356"; transcript_id "RvY_09356.1"; Scaffold004 rebuild transcript 3081706 3081981 . - . gene_id "RvY_09357"; transcript_id "RvY_09357.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3081706 3081981 . - . gene_id "RvY_09357"; transcript_id "RvY_09357.1"; Scaffold004 rebuild transcript 3082978 3084768 . + . gene_id "RvY_09358"; transcript_id "RvY_09358.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3082978 3083624 . + . gene_id "RvY_09358"; transcript_id "RvY_09358.1"; Scaffold004 rebuild exon 3083798 3084323 . + . gene_id "RvY_09358"; transcript_id "RvY_09358.1"; Scaffold004 rebuild exon 3084388 3084768 . + . gene_id "RvY_09358"; transcript_id "RvY_09358.1"; Scaffold004 rebuild transcript 3084836 3087010 . - . gene_id "RvY_09359"; transcript_id "RvY_09359.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3084836 3085426 . - . gene_id "RvY_09359"; transcript_id "RvY_09359.1"; Scaffold004 rebuild exon 3085730 3086179 . - . gene_id "RvY_09359"; transcript_id "RvY_09359.1"; Scaffold004 rebuild exon 3086272 3086583 . - . gene_id "RvY_09359"; transcript_id "RvY_09359.1"; Scaffold004 rebuild exon 3086699 3087010 . - . gene_id "RvY_09359"; transcript_id "RvY_09359.1"; Scaffold004 rebuild transcript 3087649 3091939 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; gene_name "HrpA"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "DHX57_MOUSE(e-value:1.5e-09;bit-score:61.0)"; Scaffold004 rebuild exon 3087649 3088320 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild exon 3088382 3088488 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild exon 3088836 3089456 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild exon 3089893 3090350 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild exon 3090529 3090965 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild exon 3091044 3091376 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild exon 3091610 3091939 . + . gene_id "RvY_09360"; transcript_id "RvY_09360.1"; Scaffold004 rebuild transcript 3092416 3094385 . - . gene_id "RvY_09361"; transcript_id "RvY_09361.1"; gene_name "BGN"; annotation "biglycan"; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; KO "K08118"; Scaffold004 rebuild exon 3092416 3092510 . - . gene_id "RvY_09361"; transcript_id "RvY_09361.1"; Scaffold004 rebuild exon 3092612 3094385 . - . gene_id "RvY_09361"; transcript_id "RvY_09361.1"; Scaffold004 rebuild transcript 3095687 3100227 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; annotation "hypothetical protein."; Pfam "[Urb2] Urb2/Npa2 family"; KO "K14862"; Scaffold004 rebuild exon 3095687 3095842 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; Scaffold004 rebuild exon 3095933 3096044 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; Scaffold004 rebuild exon 3096122 3096423 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; Scaffold004 rebuild exon 3096552 3097551 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; Scaffold004 rebuild exon 3097624 3098792 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; Scaffold004 rebuild exon 3099784 3100227 . - . gene_id "RvY_09362"; transcript_id "RvY_09362.1"; Scaffold004 rebuild transcript 3106612 3108982 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; gene_name "(2)CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "(2)Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold004 rebuild exon 3106612 3106655 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3106717 3106970 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3107037 3107226 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3107282 3107391 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3107460 3107591 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3107687 3107909 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3107979 3108280 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3108341 3108532 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3108605 3108823 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild exon 3108903 3108982 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.1"; Scaffold004 rebuild transcript 3106359 3107913 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; gene_name "(2)CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "(2)Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain."; Scaffold004 rebuild exon 3106359 3106414 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; Scaffold004 rebuild exon 3106509 3106655 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; Scaffold004 rebuild exon 3106753 3107226 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; Scaffold004 rebuild exon 3107282 3107391 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; Scaffold004 rebuild exon 3107460 3107591 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; Scaffold004 rebuild exon 3107687 3107913 . + . gene_id "RvY_09363"; transcript_id "RvY_09363.2"; Scaffold004 rebuild transcript 3109902 3110770 . + . gene_id "RvY_09364"; transcript_id "RvY_09364.1"; gene_name "FRS2"; annotation "fibroblast growth factor receptor substrate 2"; Pfam "[IRS] PTB domain (IRS-1 type)"; CDD "Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs."; KO "K12461"; Scaffold004 rebuild exon 3109902 3110405 . + . gene_id "RvY_09364"; transcript_id "RvY_09364.1"; Scaffold004 rebuild exon 3110465 3110770 . + . gene_id "RvY_09364"; transcript_id "RvY_09364.1"; Scaffold004 rebuild transcript 3111347 3112495 . + . gene_id "RvY_09365"; transcript_id "RvY_09365.1"; annotation "hypothetical protein."; Pfam "[FLYWCH] FLYWCH zinc finger domain"; Scaffold004 rebuild exon 3111347 3111620 . + . gene_id "RvY_09365"; transcript_id "RvY_09365.1"; Scaffold004 rebuild exon 3111714 3112495 . + . gene_id "RvY_09365"; transcript_id "RvY_09365.1"; Scaffold004 rebuild transcript 3113082 3116058 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; gene_name "RhoGAP"; annotation "hypothetical protein."; Pfam "[RhoGAP]"; CDD "RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, Scaffold004 rebuild exon 3113082 3113534 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3113646 3113752 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3113852 3113926 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3114016 3114197 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3114259 3114465 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3114538 3114647 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3114758 3114919 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3115634 3115694 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild exon 3115955 3116058 . - . gene_id "RvY_09366"; transcript_id "RvY_09366.1"; Scaffold004 rebuild transcript 3114316 3114486 . + . gene_id "RvY_09367"; transcript_id "RvY_09367.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3114316 3114486 . + . gene_id "RvY_09367"; transcript_id "RvY_09367.1"; Scaffold004 rebuild transcript 3117345 3118217 . - . gene_id "RvY_09368"; transcript_id "RvY_09368.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3117345 3117396 . - . gene_id "RvY_09368"; transcript_id "RvY_09368.1"; Scaffold004 rebuild exon 3117586 3117637 . - . gene_id "RvY_09368"; transcript_id "RvY_09368.1"; Scaffold004 rebuild exon 3117844 3118027 . - . gene_id "RvY_09368"; transcript_id "RvY_09368.1"; Scaffold004 rebuild exon 3118176 3118217 . - . gene_id "RvY_09368"; transcript_id "RvY_09368.1"; Scaffold004 rebuild transcript 3118763 3120673 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; gene_name "CDC37"; annotation "Hsp90 co-chaperone Cdc37"; Pfam "[CDC37_N] Cdc37 N terminal kinase binding|[CDC37_M] Cdc37 Hsp90 binding domain|[CDC37_C] Cdc37 C terminal domain"; KO "K09554"; similar_genes "CDC37_BOVIN(e-value:6.9e-63;bit-score:238.0)"; Scaffold004 rebuild exon 3118763 3118798 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3118896 3119029 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3119097 3119235 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3119348 3119464 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3119545 3119703 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3119790 3120026 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3120339 3120407 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild exon 3120497 3120673 . + . gene_id "RvY_09369"; transcript_id "RvY_09369.1"; Scaffold004 rebuild transcript 3121382 3121959 . - . gene_id "RvY_09370"; transcript_id "RvY_09370.1"; gene_name "RP-S23e"; annotation "40S ribosomal protein S23"; Pfam "[Ribosomal_S12] Ribosomal protein S12"; CDD "40S ribosomal S23; Provisional"; KO "K02973"; similar_genes "RS23_DERVA(e-value:7.3e-71;bit-score:264.0)"; Scaffold004 rebuild exon 3121382 3121528 . - . gene_id "RvY_09370"; transcript_id "RvY_09370.1"; Scaffold004 rebuild exon 3121604 3121724 . - . gene_id "RvY_09370"; transcript_id "RvY_09370.1"; Scaffold004 rebuild exon 3121796 3121959 . - . gene_id "RvY_09370"; transcript_id "RvY_09370.1"; Scaffold004 rebuild transcript 3122187 3122600 . + . gene_id "RvY_09371"; transcript_id "RvY_09371.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3122187 3122600 . + . gene_id "RvY_09371"; transcript_id "RvY_09371.1"; Scaffold004 rebuild transcript 3122632 3127152 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; gene_name "Coatamer_beta_C"; annotation "Coatomer subunit beta"; Pfam "[Coatamer_beta_C] Coatamer beta C-terminal region|[Adaptin_N] Adaptin N terminal region|[HEAT_2] HEAT repeats|[HEAT] HEAT repeat"; CDD "Coatamer beta C-terminal region. This family is found at the N-terminus of the coatamer beta subunit proteins (Beta-coat proteins). This C-terminal domain probably adapts the function of the N-terminal pfam01602 domain."; similar_genes "COPB_BOVIN(e-value:1.6e-136;bit-score:483.0)"; Scaffold004 rebuild exon 3122632 3122722 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3122789 3123018 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3123144 3123313 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3123436 3123643 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3123706 3123843 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3123923 3124045 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3124122 3124229 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3124299 3124445 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3124536 3124684 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3124743 3124839 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3124900 3125066 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3125132 3125252 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3125324 3125395 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3125468 3125620 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3125686 3125778 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3125844 3125930 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3126021 3126165 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3126268 3126387 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3126463 3126608 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3126674 3126763 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3126831 3126989 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild exon 3127057 3127152 . + . gene_id "RvY_09372"; transcript_id "RvY_09372.1"; Scaffold004 rebuild transcript 3128171 3131752 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; gene_name "RRAS2"; annotation "Ras-like protein 2"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively Scaffold004 rebuild exon 3128171 3128249 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3128335 3128562 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3128633 3128735 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3128816 3128853 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3128962 3129011 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3131398 3131425 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3131564 3131604 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild exon 3131714 3131752 . - . gene_id "RvY_09373"; transcript_id "RvY_09373.1"; Scaffold004 rebuild transcript 3133640 3135688 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; gene_name "MRP-S28"; annotation "putative 28S ribosomal protein S35, mitochondrial"; Pfam "[MRP-S28] Mitochondrial ribosomal subunit protein"; CDD "Mitochondrial ribosomal subunit protein. This is a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae the protein is MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial ribosome has 29 distinct proteins in the small subunit and these have homologues in, for example, Drosophila melanogaster, Caenorhabditis elegans, and in the genomes of several fungi."; similar_genes "RT35_BOVIN(e-value:1.6e-28;bit-score:124.0)"; Scaffold004 rebuild exon 3133640 3133748 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3133921 3134018 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3134089 3134314 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3134385 3134524 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3134609 3134718 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3134793 3134862 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3135304 3135420 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild exon 3135509 3135688 . + . gene_id "RvY_09374"; transcript_id "RvY_09374.1"; Scaffold004 rebuild transcript 3136735 3143904 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; gene_name "PPP1R12A"; annotation "putative Protein phosphatase 1 regulatory subunit 12A"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "K06270"; similar_genes "MYPT1_HUMAN(e-value:8.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 3136735 3136820 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3136970 3137159 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3137919 3138049 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3138137 3138255 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3138324 3138483 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3138544 3138688 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3138750 3138824 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3138898 3138956 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3139022 3139244 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3139307 3139636 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3139725 3139826 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3139900 3139968 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3140067 3140122 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3140454 3140561 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3140646 3140736 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3140906 3141170 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3141236 3141318 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3141422 3141526 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3143178 3143375 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3143431 3143517 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3143592 3143639 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3143709 3143759 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild exon 3143818 3143904 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.1"; Scaffold004 rebuild transcript 3136735 3141553 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; gene_name "PPP1R12A"; annotation "putative Protein phosphatase 1 regulatory subunit 12A"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "K06270"; similar_genes "MYPT1_HUMAN(e-value:8.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 3136735 3136820 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3136970 3137159 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3137919 3138049 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3138137 3138255 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3138324 3138483 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3138544 3138688 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3138750 3138824 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3138898 3138956 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3139022 3139244 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3139307 3139636 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3139725 3139826 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3139900 3139968 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3140067 3140122 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3140454 3140561 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3140646 3140736 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3140906 3141170 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3141236 3141318 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild exon 3141422 3141553 . + . gene_id "RvY_09375"; transcript_id "RvY_09375.2"; Scaffold004 rebuild transcript 3144635 3145186 . - . gene_id "RvY_09376"; transcript_id "RvY_09376.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3144635 3144984 . - . gene_id "RvY_09376"; transcript_id "RvY_09376.1"; Scaffold004 rebuild exon 3145087 3145186 . - . gene_id "RvY_09376"; transcript_id "RvY_09376.1"; Scaffold004 rebuild transcript 3146575 3147183 . - . gene_id "RvY_09377"; transcript_id "RvY_09377.1"; gene_name "prfB"; annotation "hypothetical protein."; Pfam "[RF-1]"; CDD "peptide chain release factor 2; Validated"; similar_genes "CL065_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold004 rebuild exon 3146575 3146916 . - . gene_id "RvY_09377"; transcript_id "RvY_09377.1"; Scaffold004 rebuild exon 3147016 3147183 . - . gene_id "RvY_09377"; transcript_id "RvY_09377.1"; Scaffold004 rebuild transcript 3150175 3152348 . - . gene_id "RvY_09378"; transcript_id "RvY_09378.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3150175 3150398 . - . gene_id "RvY_09378"; transcript_id "RvY_09378.1"; Scaffold004 rebuild exon 3150454 3150613 . - . gene_id "RvY_09378"; transcript_id "RvY_09378.1"; Scaffold004 rebuild exon 3150685 3151454 . - . gene_id "RvY_09378"; transcript_id "RvY_09378.1"; Scaffold004 rebuild exon 3151826 3152348 . - . gene_id "RvY_09378"; transcript_id "RvY_09378.1"; Scaffold004 rebuild transcript 3153196 3153588 . + . gene_id "RvY_09379"; transcript_id "RvY_09379.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3153196 3153588 . + . gene_id "RvY_09379"; transcript_id "RvY_09379.1"; Scaffold004 rebuild transcript 3153734 3154117 . + . gene_id "RvY_09380"; transcript_id "RvY_09380.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3153734 3154117 . + . gene_id "RvY_09380"; transcript_id "RvY_09380.1"; Scaffold004 rebuild transcript 3155625 3156177 . + . gene_id "RvY_09381"; transcript_id "RvY_09381.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3155625 3155845 . + . gene_id "RvY_09381"; transcript_id "RvY_09381.1"; Scaffold004 rebuild exon 3156024 3156177 . + . gene_id "RvY_09381"; transcript_id "RvY_09381.1"; Scaffold004 rebuild transcript 3158503 3159881 . - . gene_id "RvY_09382"; transcript_id "RvY_09382.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3158503 3158739 . - . gene_id "RvY_09382"; transcript_id "RvY_09382.1"; Scaffold004 rebuild exon 3158762 3159042 . - . gene_id "RvY_09382"; transcript_id "RvY_09382.1"; Scaffold004 rebuild exon 3159465 3159689 . - . gene_id "RvY_09382"; transcript_id "RvY_09382.1"; Scaffold004 rebuild exon 3159764 3159881 . - . gene_id "RvY_09382"; transcript_id "RvY_09382.1"; Scaffold004 rebuild transcript 3160912 3163746 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; gene_name "K00858"; annotation "NAD kinase"; Pfam "[NAD_kinase] ATP-NAD kinase"; CDD "NAD kinase [Coenzyme metabolism]"; EC "EC2.7.1.23"; KO "K00858"; similar_genes "NADK_HUMAN(e-value:6.8e-61;bit-score:231.0)"; Scaffold004 rebuild exon 3160912 3161186 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild exon 3161858 3161888 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild exon 3162070 3162255 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild exon 3162529 3162634 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild exon 3162705 3162790 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild exon 3162871 3163222 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild exon 3163397 3163746 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.1"; Scaffold004 rebuild transcript 3160912 3163746 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; gene_name "K00858"; annotation "NAD kinase"; Pfam "[NAD_kinase] ATP-NAD kinase"; CDD "NAD kinase [Coenzyme metabolism]"; EC "EC2.7.1.23"; KO "K00858"; similar_genes "NADK_HUMAN(e-value:6.8e-61;bit-score:231.0)"; Scaffold004 rebuild exon 3160912 3161186 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild exon 3161858 3161888 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild exon 3162070 3162255 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild exon 3162529 3162634 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild exon 3162705 3162790 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild exon 3162871 3163226 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild exon 3163401 3163746 . + . gene_id "RvY_09383"; transcript_id "RvY_09383.2"; Scaffold004 rebuild transcript 3165729 3169097 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3165729 3165858 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3165923 3166113 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3166197 3166319 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3166607 3167112 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3167196 3167846 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3167957 3168467 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3168541 3168839 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild exon 3168902 3169097 . + . gene_id "RvY_09384"; transcript_id "RvY_09384.1"; Scaffold004 rebuild transcript 3169331 3172137 . - . gene_id "RvY_09385"; transcript_id "RvY_09385.1"; gene_name "SF3A1"; annotation "putative Splicing factor 3A subunit 1"; Pfam "[ubiquitin] Ubiquitin family|[Surp] Surp module|[PRP21_like_P] Pre-mRNA splicing factor PRP21 like protein"; CDD "SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its Scaffold004 rebuild exon 3169331 3169680 . - . gene_id "RvY_09385"; transcript_id "RvY_09385.1"; Scaffold004 rebuild exon 3169751 3170018 . - . gene_id "RvY_09385"; transcript_id "RvY_09385.1"; Scaffold004 rebuild exon 3170112 3170605 . - . gene_id "RvY_09385"; transcript_id "RvY_09385.1"; Scaffold004 rebuild exon 3170848 3171632 . - . gene_id "RvY_09385"; transcript_id "RvY_09385.1"; Scaffold004 rebuild exon 3171800 3172137 . - . gene_id "RvY_09385"; transcript_id "RvY_09385.1"; Scaffold004 rebuild transcript 3172976 3173652 . + . gene_id "RvY_09386"; transcript_id "RvY_09386.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3172976 3173117 . + . gene_id "RvY_09386"; transcript_id "RvY_09386.1"; Scaffold004 rebuild exon 3173211 3173318 . + . gene_id "RvY_09386"; transcript_id "RvY_09386.1"; Scaffold004 rebuild exon 3173600 3173652 . + . gene_id "RvY_09386"; transcript_id "RvY_09386.1"; Scaffold004 rebuild transcript 3176525 3176692 . - . gene_id "RvY_09387"; transcript_id "RvY_09387.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3176525 3176692 . - . gene_id "RvY_09387"; transcript_id "RvY_09387.1"; Scaffold004 rebuild transcript 3176700 3180246 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; annotation "hypothetical protein."; Pfam "[SAND]"; Scaffold004 rebuild exon 3176700 3177197 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; Scaffold004 rebuild exon 3178744 3178889 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; Scaffold004 rebuild exon 3179010 3179095 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; Scaffold004 rebuild exon 3179189 3179450 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; Scaffold004 rebuild exon 3179562 3179710 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; Scaffold004 rebuild exon 3179786 3180246 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.1"; Scaffold004 rebuild transcript 3178578 3180246 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; annotation "hypothetical protein."; Pfam "[SAND]"; Scaffold004 rebuild exon 3178578 3178670 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; Scaffold004 rebuild exon 3178744 3178889 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; Scaffold004 rebuild exon 3179010 3179095 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; Scaffold004 rebuild exon 3179189 3179450 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; Scaffold004 rebuild exon 3179562 3179710 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; Scaffold004 rebuild exon 3179786 3180246 . + . gene_id "RvY_09388"; transcript_id "RvY_09388.2"; Scaffold004 rebuild transcript 3180667 3181865 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; gene_name "CHMP2B"; annotation "charged multivesicular body protein 2B"; Pfam "[Snf7]"; KO "K12192"; similar_genes "CHM2B_DANRE(e-value:2.6e-07;bit-score:53.0)"; Scaffold004 rebuild exon 3180667 3180798 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild exon 3180887 3180993 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild exon 3181065 3181218 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild exon 3181303 3181407 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild exon 3181494 3181535 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild exon 3181628 3181719 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild exon 3181817 3181865 . - . gene_id "RvY_09389"; transcript_id "RvY_09389.1"; Scaffold004 rebuild transcript 3182663 3184261 . + . gene_id "RvY_09390"; transcript_id "RvY_09390.1"; gene_name "RP-L4e"; annotation "60S ribosomal protein L4-B"; Pfam "[Ribosomal_L4] Ribosomal protein L4/L1 family|[Ribos_L4_asso_C] 60S ribosomal protein L4 C-terminal domain"; CDD "50S ribosomal protein L4P; Provisional"; KO "K02930"; similar_genes "RL4B_XENLA(e-value:5.8e-128;bit-score:454.0)"; Scaffold004 rebuild exon 3182663 3182820 . + . gene_id "RvY_09390"; transcript_id "RvY_09390.1"; Scaffold004 rebuild exon 3182881 3182996 . + . gene_id "RvY_09390"; transcript_id "RvY_09390.1"; Scaffold004 rebuild exon 3183068 3183270 . + . gene_id "RvY_09390"; transcript_id "RvY_09390.1"; Scaffold004 rebuild exon 3183426 3183630 . + . gene_id "RvY_09390"; transcript_id "RvY_09390.1"; Scaffold004 rebuild exon 3183753 3184261 . + . gene_id "RvY_09390"; transcript_id "RvY_09390.1"; Scaffold004 rebuild transcript 3184527 3185687 . - . gene_id "RvY_09391"; transcript_id "RvY_09391.1"; gene_name "AGP_acyltrn"; annotation "hypothetical protein."; Pfam "[Acyltransferase]"; CDD "1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase."; EC "EC2.3.1.51"; KO "K13509"; similar_genes "PLCA_MOUSE(e-value:2.1e-15;bit-score:80.0)"; Scaffold004 rebuild exon 3184527 3184669 . - . gene_id "RvY_09391"; transcript_id "RvY_09391.1"; Scaffold004 rebuild exon 3184761 3184926 . - . gene_id "RvY_09391"; transcript_id "RvY_09391.1"; Scaffold004 rebuild exon 3184998 3185170 . - . gene_id "RvY_09391"; transcript_id "RvY_09391.1"; Scaffold004 rebuild exon 3185259 3185404 . - . gene_id "RvY_09391"; transcript_id "RvY_09391.1"; Scaffold004 rebuild exon 3185470 3185687 . - . gene_id "RvY_09391"; transcript_id "RvY_09391.1"; Scaffold004 rebuild transcript 3186338 3186523 . - . gene_id "RvY_09392"; transcript_id "RvY_09392.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3186338 3186523 . - . gene_id "RvY_09392"; transcript_id "RvY_09392.1"; Scaffold004 rebuild transcript 3186770 3187872 . + . gene_id "RvY_09393"; transcript_id "RvY_09393.1"; annotation "hypothetical protein."; Pfam "[cEGF] Complement Clr-like EGF-like|[EGF_MSP1_1] MSP1 EGF domain 1|[EGF_CA] Calcium-binding EGF domain"; Scaffold004 rebuild exon 3186770 3186826 . + . gene_id "RvY_09393"; transcript_id "RvY_09393.1"; Scaffold004 rebuild exon 3186943 3187141 . + . gene_id "RvY_09393"; transcript_id "RvY_09393.1"; Scaffold004 rebuild exon 3187221 3187292 . + . gene_id "RvY_09393"; transcript_id "RvY_09393.1"; Scaffold004 rebuild exon 3187364 3187872 . + . gene_id "RvY_09393"; transcript_id "RvY_09393.1"; Scaffold004 rebuild transcript 3188328 3190700 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; gene_name "PAN2"; annotation "putative PAB-dependent poly(A)-specific ribonuclease subunit 2"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[RNase_T] Exonuclease"; CDD "PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold004 rebuild exon 3188328 3188636 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3188708 3188887 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3188951 3189246 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3189317 3189407 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3189470 3189728 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3189805 3190007 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3190105 3190202 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3190288 3190591 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild exon 3190662 3190700 . - . gene_id "RvY_09394"; transcript_id "RvY_09394.1"; Scaffold004 rebuild transcript 3190913 3192925 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3190913 3191174 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; Scaffold004 rebuild exon 3191261 3191382 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; Scaffold004 rebuild exon 3191449 3191725 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; Scaffold004 rebuild exon 3191912 3192364 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; Scaffold004 rebuild exon 3192520 3192698 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; Scaffold004 rebuild exon 3192773 3192925 . - . gene_id "RvY_09395"; transcript_id "RvY_09395.1"; Scaffold004 rebuild transcript 3194081 3195271 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; gene_name "CD151"; annotation "CD151 antigen"; Pfam "[Tetraspannin] Tetraspanin family"; KO "K06537"; Scaffold004 rebuild exon 3194081 3194188 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; Scaffold004 rebuild exon 3194278 3194463 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; Scaffold004 rebuild exon 3194540 3194614 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; Scaffold004 rebuild exon 3194690 3194962 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; Scaffold004 rebuild exon 3195022 3195105 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; Scaffold004 rebuild exon 3195173 3195271 . + . gene_id "RvY_09396"; transcript_id "RvY_09396.1"; Scaffold004 rebuild transcript 3196427 3207955 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; annotation "hypothetical protein."; Pfam "[ASD2] Apx/Shroom domain ASD2"; Scaffold004 rebuild exon 3196427 3196564 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3198191 3198339 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3202876 3203312 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3203388 3203968 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3204145 3204239 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3205955 3206359 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3206457 3206899 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3206960 3207264 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3207367 3207639 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild exon 3207698 3207955 . + . gene_id "RvY_09397"; transcript_id "RvY_09397.1"; Scaffold004 rebuild transcript 3208274 3209381 . - . gene_id "RvY_09398"; transcript_id "RvY_09398.1"; gene_name "K07055"; annotation "putative tRNA wybutosine-synthesizing protein 2/3/4"; Pfam "[Methyltransf_26] Methyltransferase domain|[Met_10] Met-10+ like-protein|[Methyltransf_18] Methyltransferase domain|[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|[MTS] Methyltransferase small domain"; CDD "Predicted methyltransferase [General function prediction only]"; EC "EC2.1.1.-"; KO "K07055"; similar_genes "TYW23_ORYSJ(e-value:7.4e-37;bit-score:152.0)"; Scaffold004 rebuild exon 3208274 3208711 . - . gene_id "RvY_09398"; transcript_id "RvY_09398.1"; Scaffold004 rebuild exon 3208782 3209381 . - . gene_id "RvY_09398"; transcript_id "RvY_09398.1"; Scaffold004 rebuild transcript 3211355 3215518 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; annotation "WASH complex subunit 7"; similar_genes "WAHS7_HUMAN(e-value:9.1e-65;bit-score:244.0)"; Scaffold004 rebuild exon 3211355 3211561 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3211647 3211841 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3211919 3212002 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3212067 3212281 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3212380 3213172 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3213240 3213680 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3213754 3214101 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3214189 3214469 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3214564 3215200 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3215269 3215390 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild exon 3215500 3215518 . - . gene_id "RvY_09399"; transcript_id "RvY_09399.1"; Scaffold004 rebuild transcript 3216115 3220235 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; gene_name "AP2A"; annotation "AP-2 complex subunit alpha"; Pfam "[Alpha_adaptin_C] Alpha adaptin AP2, C-terminal domain|[Adaptin_N] Adaptin N terminal region|[HEAT_2] HEAT repeats|[Alpha_adaptinC2] Adaptin C-terminal domain"; KO "K11824"; similar_genes "AP2A_ANOGA(e-value:7.4e-300;bit-score:1025.0)"; Scaffold004 rebuild exon 3216115 3216178 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3216250 3216318 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3216412 3216554 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3216623 3216816 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3216902 3217133 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3217215 3217323 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3217394 3217544 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3217623 3217694 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3217774 3217870 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3217955 3218200 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3218283 3218455 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3218549 3218678 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3218745 3219005 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3219069 3219349 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3219418 3219714 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3219780 3219966 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild exon 3220023 3220235 . + . gene_id "RvY_09400"; transcript_id "RvY_09400.1"; Scaffold004 rebuild transcript 3220859 3222659 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; gene_name "TRA2"; annotation "transformer-2 protein"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K12897"; similar_genes "TRA2A_HUMAN(e-value:5.1e-25;bit-score:112.0)"; Scaffold004 rebuild exon 3220859 3221011 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3221087 3221146 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3221219 3221283 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3221344 3221407 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3221538 3221697 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3221763 3221795 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3221907 3222029 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3222178 3222368 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild exon 3222636 3222659 . - . gene_id "RvY_09401"; transcript_id "RvY_09401.1"; Scaffold004 rebuild transcript 3220865 3221206 . + . gene_id "RvY_09402"; transcript_id "RvY_09402.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3220865 3221206 . + . gene_id "RvY_09402"; transcript_id "RvY_09402.1"; Scaffold004 rebuild transcript 3225890 3229209 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; gene_name "PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold004 rebuild exon 3225890 3226221 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild exon 3226445 3226967 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild exon 3227088 3227505 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild exon 3227564 3228129 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild exon 3228298 3228762 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild exon 3228887 3229032 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild exon 3229119 3229209 . - . gene_id "RvY_09403"; transcript_id "RvY_09403.1"; Scaffold004 rebuild transcript 3230288 3231094 . + . gene_id "RvY_09404"; transcript_id "RvY_09404.1"; gene_name "RP-L15e"; annotation "60S ribosomal protein L15"; Pfam "[Ribosomal_L15e] Ribosomal L15"; CDD "60S ribosomal protein L15; Provisional"; KO "K02877"; similar_genes "RL15_HUMAN(e-value:1.3e-89;bit-score:327.0)"; Scaffold004 rebuild exon 3230288 3230459 . + . gene_id "RvY_09404"; transcript_id "RvY_09404.1"; Scaffold004 rebuild exon 3230577 3230713 . + . gene_id "RvY_09404"; transcript_id "RvY_09404.1"; Scaffold004 rebuild exon 3230789 3231094 . + . gene_id "RvY_09404"; transcript_id "RvY_09404.1"; Scaffold004 rebuild transcript 3231426 3231950 . - . gene_id "RvY_09405"; transcript_id "RvY_09405.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_S21] Ribosomal protein S21"; similar_genes "RT21_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold004 rebuild exon 3231426 3231609 . - . gene_id "RvY_09405"; transcript_id "RvY_09405.1"; Scaffold004 rebuild exon 3231862 3231950 . - . gene_id "RvY_09405"; transcript_id "RvY_09405.1"; Scaffold004 rebuild transcript 3232745 3236727 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; product "p53"; annotation "p53 | hypothetical protein."; Pfam "[P53] P53 DNA-binding domain"; Scaffold004 rebuild exon 3232745 3232803 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3232876 3233077 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3233221 3233684 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3233783 3233919 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3233998 3234123 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3234202 3234294 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3234371 3234467 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3234533 3234576 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3234675 3234812 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3234921 3235191 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3235258 3235392 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3235470 3235563 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild exon 3236656 3236727 . + . gene_id "RvY_09406"; transcript_id "RvY_09406.1"; Scaffold004 rebuild transcript 3237666 3241343 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; annotation "hypothetical protein."; similar_genes "FA65C_DANRE(e-value:2.1e-13;bit-score:74.0)"; Scaffold004 rebuild exon 3237666 3237745 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3237816 3238040 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3238161 3238310 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3238406 3238549 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3238631 3238729 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3238800 3239268 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3239357 3239611 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3239680 3239806 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3239885 3240033 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3240103 3240272 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3240465 3240626 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3240740 3240788 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3240875 3241007 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild exon 3241078 3241343 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.1"; Scaffold004 rebuild transcript 3239345 3241343 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; annotation "hypothetical protein."; similar_genes "FA65C_DANRE(e-value:2.1e-13;bit-score:74.0)"; Scaffold004 rebuild exon 3239345 3239611 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3239680 3239806 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3239885 3240033 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3240103 3240272 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3240465 3240626 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3240740 3240788 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3240875 3241007 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild exon 3241078 3241343 . - . gene_id "RvY_09407"; transcript_id "RvY_09407.2"; Scaffold004 rebuild transcript 3244622 3244900 . + . gene_id "RvY_09408"; transcript_id "RvY_09408.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3244622 3244900 . + . gene_id "RvY_09408"; transcript_id "RvY_09408.1"; Scaffold004 rebuild transcript 3246180 3247789 . - . gene_id "RvY_09409"; transcript_id "RvY_09409.1"; gene_name "POU3F"; annotation "putative POU domain, class 3, transcription factor 4"; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; KO "K09365"; similar_genes "PO3F4_MOUSE(e-value:1.1e-35;bit-score:148.0)"; Scaffold004 rebuild exon 3246180 3246323 . - . gene_id "RvY_09409"; transcript_id "RvY_09409.1"; Scaffold004 rebuild exon 3246390 3246533 . - . gene_id "RvY_09409"; transcript_id "RvY_09409.1"; Scaffold004 rebuild exon 3246611 3246852 . - . gene_id "RvY_09409"; transcript_id "RvY_09409.1"; Scaffold004 rebuild exon 3247132 3247789 . - . gene_id "RvY_09409"; transcript_id "RvY_09409.1"; Scaffold004 rebuild transcript 3251651 3253599 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; annotation "putative Leucine-rich repeat-containing protein 50"; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; similar_genes "LRC50_HUMAN(e-value:2.1e-32;bit-score:137.0)"; Scaffold004 rebuild exon 3251651 3251909 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; Scaffold004 rebuild exon 3252004 3252301 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; Scaffold004 rebuild exon 3252367 3252452 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; Scaffold004 rebuild exon 3252511 3252817 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; Scaffold004 rebuild exon 3252909 3253130 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; Scaffold004 rebuild exon 3253224 3253599 . - . gene_id "RvY_09410"; transcript_id "RvY_09410.1"; Scaffold004 rebuild transcript 3254509 3256810 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; gene_name "RAB11FIP1_2_5"; annotation "Rab11 family-interacting protein 1/2/5"; Pfam "[RBD-FIP] FIP domain|[C2]"; CDD "Protein kinase C conserved region 2 (CalB); Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands."; KO "K12484"; Scaffold004 rebuild exon 3254509 3254587 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3254713 3254750 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3254838 3254902 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3255044 3255175 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3255287 3255459 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3255566 3255798 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3255881 3256048 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3256145 3256277 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3256364 3256554 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild exon 3256643 3256810 . + . gene_id "RvY_09411"; transcript_id "RvY_09411.1"; Scaffold004 rebuild transcript 3257677 3259701 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; gene_name "WBP1"; annotation "putative Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit"; Pfam "[DDOST_48kD] Oligosaccharyltransferase 48 kDa subunit beta"; EC "EC2.4.1.119"; KO "K12670"; similar_genes "OST48_DROME(e-value:1.7e-36;bit-score:150.0)"; Scaffold004 rebuild exon 3257677 3257824 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3257894 3258004 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3258078 3258164 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3258238 3258344 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3258420 3258514 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3258601 3258694 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3258768 3258928 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3258995 3259263 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3259332 3259438 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild exon 3259534 3259701 . + . gene_id "RvY_09412"; transcript_id "RvY_09412.1"; Scaffold004 rebuild transcript 3267181 3267405 . - . gene_id "RvY_09413"; transcript_id "RvY_09413.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3267181 3267405 . - . gene_id "RvY_09413"; transcript_id "RvY_09413.1"; Scaffold004 rebuild transcript 3268988 3271756 . + . gene_id "RvY_09414"; transcript_id "RvY_09414.1"; gene_name "TRIM2_3"; annotation "tripartite motif-containing protein 2/3"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[Filamin] Filamin/ABP280 repeat|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[NHL] NHL repeat"; CDD "Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29)."; KO "K11997"; Scaffold004 rebuild exon 3268988 3269398 . + . gene_id "RvY_09414"; transcript_id "RvY_09414.1"; Scaffold004 rebuild exon 3269686 3270030 . + . gene_id "RvY_09414"; transcript_id "RvY_09414.1"; Scaffold004 rebuild exon 3270139 3270654 . + . gene_id "RvY_09414"; transcript_id "RvY_09414.1"; Scaffold004 rebuild exon 3270953 3271756 . + . gene_id "RvY_09414"; transcript_id "RvY_09414.1"; Scaffold004 rebuild transcript 3272295 3273914 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3272295 3272386 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3272443 3272575 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3272651 3272906 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3273005 3273034 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3273093 3273163 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3273251 3273389 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3273460 3273591 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild exon 3273772 3273914 . - . gene_id "RvY_09415"; transcript_id "RvY_09415.1"; Scaffold004 rebuild transcript 3274664 3274867 . - . gene_id "RvY_09416"; transcript_id "RvY_09416.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3274664 3274867 . - . gene_id "RvY_09416"; transcript_id "RvY_09416.1"; Scaffold004 rebuild transcript 3275444 3293219 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; gene_name "TRIO"; annotation "putative Triple functional domain protein"; Pfam "[Spectrin] Spectrin repeat|[CRAL_TRIO_2] Divergent CRAL/TRIO domain|[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; EC "EC2.7.11.-|EC2.7.11.1"; KO "K08810"; similar_genes "TRIO_DANRE(e-value:1.1e-39;bit-score:161.0)"; Scaffold004 rebuild exon 3275444 3276095 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3276456 3276694 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3276776 3277051 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3277113 3277433 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3277959 3278028 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3278310 3278480 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3278612 3278943 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3279104 3279901 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3280015 3280085 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3280158 3280214 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3282413 3282800 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3285184 3285558 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3285640 3285822 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3286000 3286218 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3286291 3286453 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3286543 3286652 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3286746 3286812 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3286873 3287168 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3287239 3287381 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3287442 3287537 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3287607 3287733 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3287795 3287944 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3288069 3288936 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3289020 3289189 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3289269 3289442 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3289756 3289878 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3289943 3290173 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3290236 3290370 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3290462 3290653 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3290735 3290857 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3290921 3291472 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3291573 3291768 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3291843 3291960 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3292052 3292123 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild exon 3293183 3293219 . - . gene_id "RvY_09417"; transcript_id "RvY_09417.1"; Scaffold004 rebuild transcript 3292023 3292274 . + . gene_id "RvY_09418"; transcript_id "RvY_09418.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3292023 3292274 . + . gene_id "RvY_09418"; transcript_id "RvY_09418.1"; Scaffold004 rebuild transcript 3294489 3298144 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; gene_name "HrpA"; annotation "(1)Probable ATP-dependent RNA helicase DHX34(2)putative Probable ATP-dependent RNA helicase DHX34"; Pfam "(1)[Helicase_C] Helicase conserved C-terminal domain|(2)[DEAD] DEAD/DEAH box helicase|(1)[OB_NTP_bind] Oligonucleotide/oligosaccharide-binding (OB)-fold|(1)[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "(1)DHX34_MOUSE(e-value:1.0e-76;bit-score:284.0)(2)DHX34_HUMAN(e-value:1.8e-31;bit-score:134.0)"; Scaffold004 rebuild exon 3294489 3294622 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3294686 3294813 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3294887 3294971 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3295040 3295195 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3295278 3295399 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3295463 3296155 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3296270 3296535 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3296611 3296857 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3296915 3297147 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3297234 3297348 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3297409 3297449 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3297508 3297627 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3297713 3297773 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3297839 3297927 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3298001 3298068 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild exon 3298135 3298144 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.1"; Scaffold004 rebuild transcript 3297405 3299637 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; gene_name "HrpA"; annotation "(1)Probable ATP-dependent RNA helicase DHX34(2)putative Probable ATP-dependent RNA helicase DHX34"; Pfam "(1)[Helicase_C] Helicase conserved C-terminal domain|(2)[DEAD] DEAD/DEAH box helicase|(1)[OB_NTP_bind] Oligonucleotide/oligosaccharide-binding (OB)-fold|(1)[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; similar_genes "(1)DHX34_MOUSE(e-value:1.0e-76;bit-score:284.0)(2)DHX34_HUMAN(e-value:1.8e-31;bit-score:134.0)"; Scaffold004 rebuild exon 3297405 3297449 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3297508 3297627 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3297713 3297773 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3297839 3297927 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3298001 3298068 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3298135 3298324 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3298407 3298426 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3298502 3298512 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3298618 3298810 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3298928 3299032 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild exon 3299148 3299637 . - . gene_id "RvY_09419"; transcript_id "RvY_09419.2"; Scaffold004 rebuild transcript 3299943 3301146 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; gene_name "TIM21"; annotation "hypothetical protein."; Pfam "[TIM21]"; CDD "TIM21. TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane."; similar_genes "TI21L_BOVIN(e-value:2.9e-06;bit-score:50.0)"; Scaffold004 rebuild exon 3299943 3300195 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; Scaffold004 rebuild exon 3300279 3300341 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; Scaffold004 rebuild exon 3300488 3300512 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; Scaffold004 rebuild exon 3300593 3300665 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; Scaffold004 rebuild exon 3300769 3300842 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; Scaffold004 rebuild exon 3300924 3301146 . + . gene_id "RvY_09420"; transcript_id "RvY_09420.1"; Scaffold004 rebuild transcript 3301549 3303190 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; gene_name "SIAH1"; annotation "E3 ubiquitin-protein ligase Siah1"; Pfam "[Sina] Seven in absentia protein family"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K04506"; similar_genes "SIAH1_DANRE(e-value:9.6e-71;bit-score:264.0)"; Scaffold004 rebuild exon 3301549 3301611 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3301723 3301846 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3301904 3302096 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3302167 3302377 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3302437 3302465 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3302551 3302626 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3302776 3302810 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3302877 3303029 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild exon 3303124 3303190 . - . gene_id "RvY_09421"; transcript_id "RvY_09421.1"; Scaffold004 rebuild transcript 3304508 3315875 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[HOOK] HOOK protein"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold004 rebuild exon 3304508 3304585 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3304659 3304753 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3307606 3307732 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3310598 3310667 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3310808 3310950 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3311058 3311186 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3311258 3311403 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3311468 3311621 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3311700 3312057 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3312130 3312659 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3312741 3313359 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3313466 3314235 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3314401 3314537 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3314642 3314880 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3314956 3315580 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild exon 3315641 3315875 . + . gene_id "RvY_09422"; transcript_id "RvY_09422.1"; Scaffold004 rebuild transcript 3316929 3318204 . + . gene_id "RvY_09423"; transcript_id "RvY_09423.1"; gene_name "HLX1"; annotation "homeobox protein HLX1"; Pfam "[Homeobox]"; KO "K09339"; similar_genes "HMH2_DROME(e-value:6.9e-12;bit-score:69.0)"; Scaffold004 rebuild exon 3316929 3317100 . + . gene_id "RvY_09423"; transcript_id "RvY_09423.1"; Scaffold004 rebuild exon 3317384 3317673 . + . gene_id "RvY_09423"; transcript_id "RvY_09423.1"; Scaffold004 rebuild exon 3318118 3318204 . + . gene_id "RvY_09423"; transcript_id "RvY_09423.1"; Scaffold004 rebuild transcript 3318607 3320912 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; gene_name "MLH3"; annotation "DNA mismatch repair protein MLH3"; Pfam "[MutL_C] MutL C terminal dimerisation domain"; CDD "DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]"; KO "K08739"; Scaffold004 rebuild exon 3318607 3318639 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3318708 3318859 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3318938 3319016 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3319109 3319497 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3319609 3319663 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3320199 3320267 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3320370 3320449 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3320527 3320629 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild exon 3320700 3320912 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.1"; Scaffold004 rebuild transcript 3318607 3320912 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; gene_name "MLH3"; annotation "DNA mismatch repair protein MLH3"; Pfam "[MutL_C] MutL C terminal dimerisation domain"; CDD "DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]"; KO "K08739"; Scaffold004 rebuild exon 3318607 3318639 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3318708 3318859 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3318938 3319016 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3319109 3319365 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3319426 3319497 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3319609 3319663 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3320199 3320267 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3320370 3320449 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3320527 3320629 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild exon 3320700 3320912 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.2"; Scaffold004 rebuild transcript 3318699 3319648 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.3"; gene_name "MLH3"; annotation "DNA mismatch repair protein MLH3"; Pfam "[MutL_C] MutL C terminal dimerisation domain"; CDD "DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]"; KO "K08739"; Scaffold004 rebuild exon 3318699 3318859 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.3"; Scaffold004 rebuild exon 3318938 3319016 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.3"; Scaffold004 rebuild exon 3319109 3319497 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.3"; Scaffold004 rebuild exon 3319609 3319648 . - . gene_id "RvY_09424"; transcript_id "RvY_09424.3"; Scaffold004 rebuild transcript 3321596 3323317 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold|[Thioesterase]"; EC "EC3.1.-.-"; similar_genes "SERHL_DANRE(e-value:1.0e-12;bit-score:71.0)"; Scaffold004 rebuild exon 3321596 3321615 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3321726 3322027 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3322091 3322152 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3322226 3322300 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3322402 3322499 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3322566 3322648 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3322713 3322750 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3322848 3322924 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3323011 3323089 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild exon 3323159 3323317 . + . gene_id "RvY_09425"; transcript_id "RvY_09425.1"; Scaffold004 rebuild transcript 3323539 3325248 . - . gene_id "RvY_09426"; transcript_id "RvY_09426.1"; gene_name "RF-1"; annotation "putative Peptide chain release factor 1"; Pfam "[RF-1]|[PCRF]"; CDD "peptide chain release factor 1; Validated"; KO "K02835"; similar_genes "RF1_GLUDA(e-value:2.7e-45;bit-score:180.0)"; Scaffold004 rebuild exon 3323539 3324033 . - . gene_id "RvY_09426"; transcript_id "RvY_09426.1"; Scaffold004 rebuild exon 3324117 3324280 . - . gene_id "RvY_09426"; transcript_id "RvY_09426.1"; Scaffold004 rebuild exon 3324403 3324586 . - . gene_id "RvY_09426"; transcript_id "RvY_09426.1"; Scaffold004 rebuild exon 3324672 3324757 . - . gene_id "RvY_09426"; transcript_id "RvY_09426.1"; Scaffold004 rebuild exon 3324843 3325248 . - . gene_id "RvY_09426"; transcript_id "RvY_09426.1"; Scaffold004 rebuild transcript 3325765 3327414 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; gene_name "YCG1"; annotation "hypothetical protein."; Pfam "[HEAT_2] HEAT repeats|[HEAT] HEAT repeat"; CDD "Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 3325765 3325965 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; Scaffold004 rebuild exon 3326085 3326339 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; Scaffold004 rebuild exon 3326422 3326634 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; Scaffold004 rebuild exon 3326741 3326774 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; Scaffold004 rebuild exon 3326862 3327092 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; Scaffold004 rebuild exon 3327167 3327414 . + . gene_id "RvY_09427"; transcript_id "RvY_09427.1"; Scaffold004 rebuild transcript 3328221 3330109 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; gene_name "K07071"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[DUF1731]|[Epimerase] NAD dependent epimerase/dehydratase family|[NAD_binding_10] NADH(P)-binding"; CDD "conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein."; KO "K07071"; Scaffold004 rebuild exon 3328221 3328236 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3328548 3328687 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3328784 3328866 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3328946 3328999 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3329150 3329217 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3329329 3329493 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3329556 3329694 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3329777 3329796 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild exon 3329853 3330109 . + . gene_id "RvY_09428"; transcript_id "RvY_09428.1"; Scaffold004 rebuild transcript 3330353 3330703 . - . gene_id "RvY_09429"; transcript_id "RvY_09429.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3330353 3330387 . - . gene_id "RvY_09429"; transcript_id "RvY_09429.1"; Scaffold004 rebuild exon 3330442 3330703 . - . gene_id "RvY_09429"; transcript_id "RvY_09429.1"; Scaffold004 rebuild transcript 3332039 3333024 . + . gene_id "RvY_09430"; transcript_id "RvY_09430.1"; annotation "hypothetical protein."; Pfam "[CD20] CD20-like family"; Scaffold004 rebuild exon 3332039 3332177 . + . gene_id "RvY_09430"; transcript_id "RvY_09430.1"; Scaffold004 rebuild exon 3332364 3332437 . + . gene_id "RvY_09430"; transcript_id "RvY_09430.1"; Scaffold004 rebuild exon 3332550 3332606 . + . gene_id "RvY_09430"; transcript_id "RvY_09430.1"; Scaffold004 rebuild exon 3332686 3333024 . + . gene_id "RvY_09430"; transcript_id "RvY_09430.1"; Scaffold004 rebuild transcript 3333072 3336690 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; gene_name "COG1293"; annotation "Serologically defined colon cancer antigen 1"; Pfam "[FbpA] Fibronectin-binding protein A N-terminus (FbpA)|[DUF814]|[DUF3441]"; CDD "Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]"; similar_genes "SDCG1_HUMAN(e-value:7.1e-67;bit-score:251.0)"; Scaffold004 rebuild exon 3333072 3333152 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3333254 3333481 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3333556 3333617 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3333736 3334704 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3334780 3335098 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3335231 3335823 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3335884 3336346 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild exon 3336415 3336690 . - . gene_id "RvY_09431"; transcript_id "RvY_09431.1"; Scaffold004 rebuild transcript 3337037 3339525 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; annotation "hypothetical protein."; Pfam "[Golgin_A5] Golgin subfamily A member 5"; similar_genes "GOGA5_DANRE(e-value:4.7e-13;bit-score:72.0)"; Scaffold004 rebuild exon 3337037 3337502 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild exon 3337626 3337802 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild exon 3337870 3338065 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild exon 3338127 3338244 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild exon 3338319 3338415 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild exon 3338496 3338602 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild exon 3338671 3339525 . + . gene_id "RvY_09432"; transcript_id "RvY_09432.1"; Scaffold004 rebuild transcript 3340208 3342112 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3340208 3340304 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.1"; Scaffold004 rebuild exon 3340367 3341215 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.1"; Scaffold004 rebuild exon 3341331 3342112 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.1"; Scaffold004 rebuild transcript 3340208 3341981 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3340208 3340304 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.2"; Scaffold004 rebuild exon 3340367 3341215 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.2"; Scaffold004 rebuild exon 3341331 3341853 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.2"; Scaffold004 rebuild exon 3341945 3341981 . + . gene_id "RvY_09433"; transcript_id "RvY_09433.2"; Scaffold004 rebuild transcript 3342629 3346415 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; annotation "Vacuolar protein sorting-associated protein 11 homolog"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[Clathrin] Region in Clathrin and VPS|[VPS11_C] Vacuolar protein sorting protein 11 C terminal"; similar_genes "VPS11_DICDI(e-value:4.9e-53;bit-score:205.0)"; Scaffold004 rebuild exon 3342629 3342643 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3342780 3342851 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3342948 3343121 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3343196 3343246 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3343333 3343499 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3343578 3343827 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3343892 3344176 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3344237 3344992 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3345105 3345605 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3345738 3345859 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3345939 3346034 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3346101 3346157 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild exon 3346238 3346415 . + . gene_id "RvY_09434"; transcript_id "RvY_09434.1"; Scaffold004 rebuild transcript 3347052 3350468 . + . gene_id "RvY_09435"; transcript_id "RvY_09435.1"; gene_name "LHX6_8"; annotation "putative LIM/homeobox protein Lhx6"; Pfam "[LIM]|[Homeobox]"; KO "K09375"; similar_genes "LHX6_MOUSE(e-value:5.9e-26;bit-score:115.0)"; Scaffold004 rebuild exon 3347052 3347216 . + . gene_id "RvY_09435"; transcript_id "RvY_09435.1"; Scaffold004 rebuild exon 3347964 3348154 . + . gene_id "RvY_09435"; transcript_id "RvY_09435.1"; Scaffold004 rebuild exon 3348756 3348988 . + . gene_id "RvY_09435"; transcript_id "RvY_09435.1"; Scaffold004 rebuild exon 3349882 3350041 . + . gene_id "RvY_09435"; transcript_id "RvY_09435.1"; Scaffold004 rebuild exon 3350225 3350468 . + . gene_id "RvY_09435"; transcript_id "RvY_09435.1"; Scaffold004 rebuild transcript 3351486 3352404 . - . gene_id "RvY_09436"; transcript_id "RvY_09436.1"; annotation "hypothetical protein."; Pfam "[DUF106] Integral membrane protein DUF106"; similar_genes "TMCO1_BOVIN(e-value:2.2e-06;bit-score:50.0)"; Scaffold004 rebuild exon 3351486 3351572 . - . gene_id "RvY_09436"; transcript_id "RvY_09436.1"; Scaffold004 rebuild exon 3351719 3351863 . - . gene_id "RvY_09436"; transcript_id "RvY_09436.1"; Scaffold004 rebuild exon 3351964 3352135 . - . gene_id "RvY_09436"; transcript_id "RvY_09436.1"; Scaffold004 rebuild exon 3352202 3352279 . - . gene_id "RvY_09436"; transcript_id "RvY_09436.1"; Scaffold004 rebuild exon 3352344 3352404 . - . gene_id "RvY_09436"; transcript_id "RvY_09436.1"; Scaffold004 rebuild transcript 3353057 3355101 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; gene_name "COG0429"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]"; EC "EC3.1.1.-"; KO "K13696"; similar_genes "ABHD3_BOVIN(e-value:5.2e-10;bit-score:62.0)"; Scaffold004 rebuild exon 3353057 3353295 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3353361 3353575 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3353650 3353752 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3353825 3353904 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3353967 3354079 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3354155 3354197 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3354295 3354684 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3354755 3354921 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild exon 3355027 3355101 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.1"; Scaffold004 rebuild transcript 3353057 3354810 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; gene_name "COG0429"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]"; EC "EC3.1.1.-"; KO "K13696"; similar_genes "ABHD3_BOVIN(e-value:5.2e-10;bit-score:62.0)"; Scaffold004 rebuild exon 3353057 3353295 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3353361 3353575 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3353650 3353752 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3353825 3353904 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3353967 3354079 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3354155 3354197 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3354295 3354684 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild exon 3354755 3354810 . - . gene_id "RvY_09437"; transcript_id "RvY_09437.2"; Scaffold004 rebuild transcript 3355528 3358277 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; gene_name "SRRM1"; annotation "putative Serine/arginine repetitive matrix protein 1"; Pfam "[PWI]"; KO "K13171"; similar_genes "SRRM1_CHICK(e-value:5.2e-44;bit-score:175.0)"; Scaffold004 rebuild exon 3355528 3355551 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3355609 3355698 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3355803 3355925 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3356002 3356273 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3356453 3357067 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3357135 3357404 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3357497 3357589 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3357693 3357837 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3357919 3358089 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild exon 3358191 3358277 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.1"; Scaffold004 rebuild transcript 3355528 3357408 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; gene_name "SRRM1"; annotation "putative Serine/arginine repetitive matrix protein 1"; Pfam "[PWI]"; KO "K13171"; similar_genes "SRRM1_CHICK(e-value:5.2e-44;bit-score:175.0)"; Scaffold004 rebuild exon 3355528 3355551 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; Scaffold004 rebuild exon 3355609 3355698 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; Scaffold004 rebuild exon 3355803 3355925 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; Scaffold004 rebuild exon 3356002 3356273 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; Scaffold004 rebuild exon 3356453 3357067 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; Scaffold004 rebuild exon 3357135 3357408 . + . gene_id "RvY_09438"; transcript_id "RvY_09438.2"; Scaffold004 rebuild transcript 3358520 3359741 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; gene_name "RP-L13Ae"; annotation "60S ribosomal protein L13a"; Pfam "[Ribosomal_L13] Ribosomal protein L13"; CDD "60S ribosomal protein L13a; Provisional"; KO "K02872"; similar_genes "RL13A_MACFA(e-value:2.2e-72;bit-score:270.0)"; Scaffold004 rebuild exon 3358520 3358603 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild exon 3358677 3358799 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild exon 3358938 3359083 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild exon 3359187 3359288 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild exon 3359360 3359425 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild exon 3359503 3359575 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild exon 3359724 3359741 . - . gene_id "RvY_09439"; transcript_id "RvY_09439.1"; Scaffold004 rebuild transcript 3360273 3363546 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3360273 3360296 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3360412 3360549 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3360637 3360799 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3361108 3361262 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3361339 3361683 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3361795 3361911 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3362040 3362164 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3362245 3362493 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3362644 3362777 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3362843 3362924 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3363000 3363141 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild exon 3363223 3363546 . + . gene_id "RvY_09440"; transcript_id "RvY_09440.1"; Scaffold004 rebuild transcript 3364220 3364768 . + . gene_id "RvY_09441"; transcript_id "RvY_09441.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "ZEN2_DROME(e-value:5.2e-10;bit-score:62.0)"; Scaffold004 rebuild exon 3364220 3364768 . + . gene_id "RvY_09441"; transcript_id "RvY_09441.1"; Scaffold004 rebuild transcript 3365585 3367138 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; gene_name "ADK"; annotation "adenosine kinase [EC:2.7.1.20]"; Pfam "[PfkB] pfkB family carbohydrate kinase"; CDD "adenosine kinase; Provisional"; EC "EC2.7.1.20"; KO "K00856"; similar_genes "ADK_CRIGR(e-value:8.7e-06;bit-score:48.0)"; Scaffold004 rebuild exon 3365585 3365637 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; Scaffold004 rebuild exon 3365739 3365867 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; Scaffold004 rebuild exon 3365944 3366201 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; Scaffold004 rebuild exon 3366280 3366385 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; Scaffold004 rebuild exon 3366462 3366668 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; Scaffold004 rebuild exon 3366791 3367138 . + . gene_id "RvY_09442"; transcript_id "RvY_09442.1"; Scaffold004 rebuild transcript 3367534 3368967 . + . gene_id "RvY_09443"; transcript_id "RvY_09443.1"; gene_name "PTZ00247"; annotation "hypothetical protein."; Pfam "[PfkB] pfkB family carbohydrate kinase"; CDD "adenosine kinase; Provisional"; Scaffold004 rebuild exon 3367534 3367547 . + . gene_id "RvY_09443"; transcript_id "RvY_09443.1"; Scaffold004 rebuild exon 3367624 3367752 . + . gene_id "RvY_09443"; transcript_id "RvY_09443.1"; Scaffold004 rebuild exon 3367833 3368184 . + . gene_id "RvY_09443"; transcript_id "RvY_09443.1"; Scaffold004 rebuild exon 3368319 3368525 . + . gene_id "RvY_09443"; transcript_id "RvY_09443.1"; Scaffold004 rebuild exon 3368617 3368967 . + . gene_id "RvY_09443"; transcript_id "RvY_09443.1"; Scaffold004 rebuild transcript 3369479 3370417 . + . gene_id "RvY_09444"; transcript_id "RvY_09444.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3369479 3369541 . + . gene_id "RvY_09444"; transcript_id "RvY_09444.1"; Scaffold004 rebuild exon 3369710 3370417 . + . gene_id "RvY_09444"; transcript_id "RvY_09444.1"; Scaffold004 rebuild transcript 3372535 3374290 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; gene_name "PP2Ac"; annotation "(1)Serine/threonine-protein phosphatase PP1-2(2)putative Serine/threonine-protein phosphatase PP1(3)Serine/threonine-protein phosphatase PP1"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "(1)PP12_SCHPO(e-value:7.7e-113;bit-score:404.0)(2)PP1_EMENI(e-value:5.5e-35;bit-score:145.0)(3)PP1_MEDVA(e-value:1.1e-67;bit-score:254.0)"; Scaffold004 rebuild exon 3372535 3372583 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3372656 3372690 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3372758 3372810 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3372882 3373012 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373089 3373133 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373237 3373282 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373380 3373425 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373524 3373560 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373654 3373688 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373773 3373893 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3373988 3374025 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild exon 3374141 3374290 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.1"; Scaffold004 rebuild transcript 3373384 3374290 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.2"; gene_name "PP2Ac"; annotation "(1)Serine/threonine-protein phosphatase PP1-2(2)putative Serine/threonine-protein phosphatase PP1(3)Serine/threonine-protein phosphatase PP1"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "(1)PP12_SCHPO(e-value:7.7e-113;bit-score:404.0)(2)PP1_EMENI(e-value:5.5e-35;bit-score:145.0)(3)PP1_MEDVA(e-value:1.1e-67;bit-score:254.0)"; Scaffold004 rebuild exon 3373384 3373425 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.2"; Scaffold004 rebuild exon 3373524 3373560 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.2"; Scaffold004 rebuild exon 3373654 3373893 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.2"; Scaffold004 rebuild exon 3373988 3374025 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.2"; Scaffold004 rebuild exon 3374141 3374290 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.2"; Scaffold004 rebuild transcript 3372535 3373583 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; gene_name "PP2Ac"; annotation "(1)Serine/threonine-protein phosphatase PP1-2(2)putative Serine/threonine-protein phosphatase PP1(3)Serine/threonine-protein phosphatase PP1"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "(1)PP12_SCHPO(e-value:7.7e-113;bit-score:404.0)(2)PP1_EMENI(e-value:5.5e-35;bit-score:145.0)(3)PP1_MEDVA(e-value:1.1e-67;bit-score:254.0)"; Scaffold004 rebuild exon 3372535 3372583 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3372656 3372690 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3372758 3372810 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3372882 3373012 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3373089 3373133 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3373237 3373282 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3373380 3373425 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild exon 3373524 3373583 . + . gene_id "RvY_09445"; transcript_id "RvY_09445.3"; Scaffold004 rebuild transcript 3374900 3375366 . + . gene_id "RvY_09446"; transcript_id "RvY_09446.1"; gene_name "S16"; annotation "hypothetical protein."; Pfam "[Ribosomal_S16] Ribosomal protein S16"; CDD "ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles."; similar_genes "RT16_CAEEL(e-value:7.6e-07;bit-score:52.0)"; Scaffold004 rebuild exon 3374900 3375099 . + . gene_id "RvY_09446"; transcript_id "RvY_09446.1"; Scaffold004 rebuild exon 3375162 3375366 . + . gene_id "RvY_09446"; transcript_id "RvY_09446.1"; Scaffold004 rebuild transcript 3375855 3377477 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; annotation "hypothetical protein."; Pfam "[BSD]"; similar_genes "SYAP1_MOUSE(e-value:1.3e-08;bit-score:58.0)"; Scaffold004 rebuild exon 3375855 3376003 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3376087 3376230 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3376292 3376321 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3376385 3376473 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3376560 3376699 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3376779 3376919 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3377036 3377139 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3377229 3377273 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild exon 3377351 3377477 . - . gene_id "RvY_09447"; transcript_id "RvY_09447.1"; Scaffold004 rebuild transcript 3377695 3378326 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3377695 3377912 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.1"; Scaffold004 rebuild exon 3377987 3378086 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.1"; Scaffold004 rebuild exon 3378177 3378326 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.1"; Scaffold004 rebuild transcript 3377908 3378326 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3377908 3377912 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.2"; Scaffold004 rebuild exon 3377987 3378086 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.2"; Scaffold004 rebuild exon 3378177 3378326 . + . gene_id "RvY_09448"; transcript_id "RvY_09448.2"; Scaffold004 rebuild transcript 3378736 3379868 . - . gene_id "RvY_09449"; transcript_id "RvY_09449.1"; gene_name "COG2302"; annotation "hypothetical protein."; CDD "Uncharacterized conserved protein, contains S4-like domain [Function unknown]"; Scaffold004 rebuild exon 3378736 3378942 . - . gene_id "RvY_09449"; transcript_id "RvY_09449.1"; Scaffold004 rebuild exon 3379065 3379137 . - . gene_id "RvY_09449"; transcript_id "RvY_09449.1"; Scaffold004 rebuild exon 3379244 3379386 . - . gene_id "RvY_09449"; transcript_id "RvY_09449.1"; Scaffold004 rebuild exon 3379533 3379868 . - . gene_id "RvY_09449"; transcript_id "RvY_09449.1"; Scaffold004 rebuild transcript 3380486 3381293 . + . gene_id "RvY_09450"; transcript_id "RvY_09450.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3380486 3380960 . + . gene_id "RvY_09450"; transcript_id "RvY_09450.1"; Scaffold004 rebuild exon 3381022 3381293 . + . gene_id "RvY_09450"; transcript_id "RvY_09450.1"; Scaffold004 rebuild transcript 3380486 3381121 . + . gene_id "RvY_09450"; transcript_id "RvY_09450.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3380486 3380904 . + . gene_id "RvY_09450"; transcript_id "RvY_09450.2"; Scaffold004 rebuild exon 3381022 3381121 . + . gene_id "RvY_09450"; transcript_id "RvY_09450.2"; Scaffold004 rebuild transcript 3383859 3385587 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; gene_name "CTSL"; annotation "Cathepsin L"; Pfam "[Peptidase_C1] Papain family cysteine protease|[Inhibitor_I29] Cathepsin propeptide inhibitor domain (I29)"; EC "EC3.4.22.15"; KO "K01365"; similar_genes "CATL_DROME(e-value:4.8e-68;bit-score:255.0)"; Scaffold004 rebuild exon 3383859 3383991 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; Scaffold004 rebuild exon 3384100 3384398 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; Scaffold004 rebuild exon 3384465 3384624 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; Scaffold004 rebuild exon 3384876 3384940 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; Scaffold004 rebuild exon 3384998 3385166 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; Scaffold004 rebuild exon 3385382 3385587 . + . gene_id "RvY_09451"; transcript_id "RvY_09451.1"; Scaffold004 rebuild transcript 3386287 3390508 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; gene_name "SF1_like-KH"; annotation "Protein quaking-A"; CDD "Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA."; KO "K14945"; similar_genes "QKIA_XENLA(e-value:3.6e-51;bit-score:199.0)"; Scaffold004 rebuild exon 3386287 3386441 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild exon 3387497 3387787 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild exon 3387889 3388006 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild exon 3388081 3388224 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild exon 3388439 3388555 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild exon 3389478 3389611 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild exon 3390097 3390508 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.1"; Scaffold004 rebuild transcript 3387471 3390508 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; gene_name "SF1_like-KH"; annotation "Protein quaking-A"; CDD "Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA."; KO "K14945"; similar_genes "QKIA_XENLA(e-value:3.6e-51;bit-score:199.0)"; Scaffold004 rebuild exon 3387471 3387787 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; Scaffold004 rebuild exon 3387889 3388006 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; Scaffold004 rebuild exon 3388081 3388224 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; Scaffold004 rebuild exon 3388439 3388555 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; Scaffold004 rebuild exon 3389478 3389611 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; Scaffold004 rebuild exon 3390097 3390508 . - . gene_id "RvY_09452"; transcript_id "RvY_09452.2"; Scaffold004 rebuild transcript 3391511 3391771 . + . gene_id "RvY_09453"; transcript_id "RvY_09453.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3391511 3391771 . + . gene_id "RvY_09453"; transcript_id "RvY_09453.1"; Scaffold004 rebuild transcript 3392120 3392847 . + . gene_id "RvY_09454"; transcript_id "RvY_09454.1"; annotation "hypothetical protein."; Pfam "[DoxX_2] DoxX-like family"; Scaffold004 rebuild exon 3392120 3392230 . + . gene_id "RvY_09454"; transcript_id "RvY_09454.1"; Scaffold004 rebuild exon 3392327 3392462 . + . gene_id "RvY_09454"; transcript_id "RvY_09454.1"; Scaffold004 rebuild exon 3392639 3392847 . + . gene_id "RvY_09454"; transcript_id "RvY_09454.1"; Scaffold004 rebuild transcript 3393751 3400987 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; annotation "hypothetical protein."; Pfam "[Ded_cyto] Dedicator of cytokinesis|[DOCK-C2] C2 domain in Dock180 and Zizimin proteins|[DOCK_C2] GTP-GDP exchange factor"; KO "K13708"; similar_genes "DOCK1_HUMAN(e-value:4.1e-14;bit-score:76.0)"; Scaffold004 rebuild exon 3393751 3393886 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3394006 3394215 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3394312 3394904 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3395064 3395459 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3395553 3396173 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3396245 3396742 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3396803 3397153 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3397339 3397980 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3398114 3398456 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3398594 3399159 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3399515 3400382 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild exon 3400485 3400987 . + . gene_id "RvY_09455"; transcript_id "RvY_09455.1"; Scaffold004 rebuild transcript 3401237 3406026 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; gene_name "NFKBIL2"; annotation "nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2"; Pfam "[TPR_2] Tetratricopeptide repeat|[Ank_4] Ankyrin repeats (many copies)|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[LRR_6] Leucine Rich repeat|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[LRR_4] Leucine Rich repeats (2 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "K09257"; similar_genes "IKBL2_DANRE(e-value:3.8e-23;bit-score:106.0)"; Scaffold004 rebuild exon 3401237 3402096 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild exon 3402241 3402993 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild exon 3403058 3403687 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild exon 3403829 3404122 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild exon 3404187 3404688 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild exon 3404775 3405218 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild exon 3405448 3406026 . - . gene_id "RvY_09456"; transcript_id "RvY_09456.1"; Scaffold004 rebuild transcript 3406676 3407228 . + . gene_id "RvY_09457"; transcript_id "RvY_09457.1"; gene_name "NDUFA6"; annotation "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 6 [EC:1.6.5.3 1.6.99.3]"; Pfam "[Complex1_LYR] Complex 1 protein (LYR family)|[Complex1_LYR_1] Complex1_LYR-like"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03950"; Scaffold004 rebuild exon 3406676 3406835 . + . gene_id "RvY_09457"; transcript_id "RvY_09457.1"; Scaffold004 rebuild exon 3406903 3407018 . + . gene_id "RvY_09457"; transcript_id "RvY_09457.1"; Scaffold004 rebuild exon 3407097 3407228 . + . gene_id "RvY_09457"; transcript_id "RvY_09457.1"; Scaffold004 rebuild transcript 3407860 3408974 . + . gene_id "RvY_09458"; transcript_id "RvY_09458.1"; gene_name "HAD-SF-IIA-hyp3"; annotation "putative Haloacid dehalogenase-like hydrolase domain-containing protein 2"; Pfam "[Hydrolase_6] Haloacid dehalogenase-like hydrolase|[HAD_2] Haloacid dehalogenase-like hydrolase|[Hydrolase_like] HAD-hyrolase-like"; CDD "HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a ""phospholysine phosphohistidine inorganic pyrophosphatase,"" probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published."; similar_genes "HDHD2_BOVIN(e-value:4.2e-35;bit-score:146.0)"; Scaffold004 rebuild exon 3407860 3407900 . + . gene_id "RvY_09458"; transcript_id "RvY_09458.1"; Scaffold004 rebuild exon 3407987 3408442 . + . gene_id "RvY_09458"; transcript_id "RvY_09458.1"; Scaffold004 rebuild exon 3408564 3408630 . + . gene_id "RvY_09458"; transcript_id "RvY_09458.1"; Scaffold004 rebuild exon 3408699 3408974 . + . gene_id "RvY_09458"; transcript_id "RvY_09458.1"; Scaffold004 rebuild transcript 3409598 3415185 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; gene_name "DPYD"; annotation "Dihydropyrimidine dehydrogenase [NADP+]"; Pfam "[Fer4_10] 4Fe-4S dicluster domain|[Fer4_7] 4Fe-4S dicluster domain|[Dus] Dihydrouridine synthase (Dus)|[DHO_dh] Dihydroorotate dehydrogenase"; CDD "Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue."; EC "EC1.3.1.2"; KO "K00207"; similar_genes "DPYD_HUMAN(e-value:4.4e-179;bit-score:624.0)"; Scaffold004 rebuild exon 3409598 3409750 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3409820 3409990 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3410061 3410106 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3410194 3410309 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3410380 3410509 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3410590 3410732 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3410848 3411043 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3411098 3411286 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3411348 3411727 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3411809 3411971 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3412122 3412174 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3412309 3412339 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3412420 3412553 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3412634 3412819 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3412892 3412946 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3413024 3413056 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3413134 3413259 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3413341 3413519 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3414104 3414241 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3414345 3414602 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3414691 3414739 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3414826 3414888 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild exon 3415013 3415185 . + . gene_id "RvY_09459"; transcript_id "RvY_09459.1"; Scaffold004 rebuild transcript 3415522 3416398 . - . gene_id "RvY_09460"; transcript_id "RvY_09460.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3415522 3415678 . - . gene_id "RvY_09460"; transcript_id "RvY_09460.1"; Scaffold004 rebuild exon 3415757 3415864 . - . gene_id "RvY_09460"; transcript_id "RvY_09460.1"; Scaffold004 rebuild exon 3415948 3416036 . - . gene_id "RvY_09460"; transcript_id "RvY_09460.1"; Scaffold004 rebuild exon 3416095 3416138 . - . gene_id "RvY_09460"; transcript_id "RvY_09460.1"; Scaffold004 rebuild exon 3416227 3416398 . - . gene_id "RvY_09460"; transcript_id "RvY_09460.1"; Scaffold004 rebuild transcript 3416456 3417277 . + . gene_id "RvY_09461"; transcript_id "RvY_09461.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3416456 3416477 . + . gene_id "RvY_09461"; transcript_id "RvY_09461.1"; Scaffold004 rebuild exon 3417006 3417277 . + . gene_id "RvY_09461"; transcript_id "RvY_09461.1"; Scaffold004 rebuild transcript 3417371 3421779 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; annotation "putative Protein RIC1 homolog"; Pfam "[RIC1]"; similar_genes "RIC1_DROME(e-value:2.6e-41;bit-score:166.0)"; Scaffold004 rebuild exon 3417371 3417514 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3417621 3417728 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3417922 3418001 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3418057 3418158 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3418223 3418365 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3418444 3418672 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3418740 3419001 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3419073 3419171 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3419228 3419377 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3419457 3419696 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3419773 3419953 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3420035 3420139 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3420224 3420351 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3420417 3420761 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild exon 3420844 3421779 . + . gene_id "RvY_09462"; transcript_id "RvY_09462.1"; Scaffold004 rebuild transcript 3423007 3424842 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; gene_name "gcvT"; annotation "putative Aminomethyltransferase, mitochondrial"; Pfam "[GCV_T_C] Glycine cleavage T-protein C-terminal barrel domain|[GCV_T] Aminomethyltransferase folate-binding domain"; CDD "glycine cleavage system aminomethyltransferase T; Provisional"; EC "EC2.1.2.10"; KO "K00605"; similar_genes "GCST_ARATH(e-value:8.9e-27;bit-score:118.0)"; Scaffold004 rebuild exon 3423007 3423239 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3423305 3423421 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3423490 3423676 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3423735 3423786 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3423852 3423942 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3424022 3424173 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3424241 3424396 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3424451 3424617 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild exon 3424702 3424842 . - . gene_id "RvY_09463"; transcript_id "RvY_09463.1"; Scaffold004 rebuild transcript 3425395 3427603 . + . gene_id "RvY_09464"; transcript_id "RvY_09464.1"; annotation "hypothetical protein."; Pfam "[SNF2_N] SNF2 family N-terminal domain|[HARP] HepA-related protein (HARP)"; EC "EC3.6.1.-"; KO "K14440"; similar_genes "SMAL1_CAEEL(e-value:4.8e-17;bit-score:86.0)"; Scaffold004 rebuild exon 3425395 3426332 . + . gene_id "RvY_09464"; transcript_id "RvY_09464.1"; Scaffold004 rebuild exon 3426434 3426469 . + . gene_id "RvY_09464"; transcript_id "RvY_09464.1"; Scaffold004 rebuild exon 3426580 3427327 . + . gene_id "RvY_09464"; transcript_id "RvY_09464.1"; Scaffold004 rebuild exon 3427385 3427603 . + . gene_id "RvY_09464"; transcript_id "RvY_09464.1"; Scaffold004 rebuild transcript 3431887 3435989 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; gene_name "(3)SMC4"; annotation "(1,2)hypothetical protein.(3)structural maintenance of chromosome 4"; Pfam "[SMC_hinge] SMC proteins Flexible Hinge Domain|[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[AAA_23] AAA domain|[AAA_21] AAA domain"; KO "(3)K06675"; similar_genes "(3)SMC4_DICDI(e-value:3.2e-18;bit-score:90.0)"; Scaffold004 rebuild exon 3431887 3432048 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3432107 3432534 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3432653 3432828 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3432900 3433109 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3433175 3433408 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3433469 3433590 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3433671 3433892 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3433965 3434115 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3434204 3434344 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3434419 3434546 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3434612 3434776 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3434850 3435044 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3435115 3435306 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3435440 3435591 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild exon 3435662 3435989 . - . gene_id "RvY_09465"; transcript_id "RvY_09465.3"; Scaffold004 rebuild transcript 3436419 3438110 . - . gene_id "RvY_09466"; transcript_id "RvY_09466.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3436419 3437958 . - . gene_id "RvY_09466"; transcript_id "RvY_09466.1"; Scaffold004 rebuild exon 3438049 3438110 . - . gene_id "RvY_09466"; transcript_id "RvY_09466.1"; Scaffold004 rebuild transcript 3438937 3440234 . + . gene_id "RvY_09467"; transcript_id "RvY_09467.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3438937 3438970 . + . gene_id "RvY_09467"; transcript_id "RvY_09467.1"; Scaffold004 rebuild exon 3439051 3439204 . + . gene_id "RvY_09467"; transcript_id "RvY_09467.1"; Scaffold004 rebuild exon 3439343 3439564 . + . gene_id "RvY_09467"; transcript_id "RvY_09467.1"; Scaffold004 rebuild exon 3439994 3440234 . + . gene_id "RvY_09467"; transcript_id "RvY_09467.1"; Scaffold004 rebuild transcript 3443780 3444305 . - . gene_id "RvY_09468"; transcript_id "RvY_09468.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3443780 3443786 . - . gene_id "RvY_09468"; transcript_id "RvY_09468.1"; Scaffold004 rebuild exon 3443854 3444104 . - . gene_id "RvY_09468"; transcript_id "RvY_09468.1"; Scaffold004 rebuild exon 3444174 3444305 . - . gene_id "RvY_09468"; transcript_id "RvY_09468.1"; Scaffold004 rebuild transcript 3446255 3446476 . + . gene_id "RvY_09469"; transcript_id "RvY_09469.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3446255 3446476 . + . gene_id "RvY_09469"; transcript_id "RvY_09469.1"; Scaffold004 rebuild transcript 3451321 3471949 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; gene_name "K01104"; annotation "Receptor-type tyrosine-protein phosphatase S"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain|[DSPc] Dual specificity phosphatase, catalytic domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain|[Y_phosphatase] Protein-tyrosine phosphatase"; EC "EC3.1.3.48"; KO "K01104"; similar_genes "PTPRS_HUMAN(e-value:1.5e-124;bit-score:443.0)"; Scaffold004 rebuild exon 3451321 3451396 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3463229 3463267 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3463337 3463588 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3463651 3463833 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3463955 3464009 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3464088 3464143 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3464214 3464339 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3464506 3465110 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3465168 3465909 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3465977 3466018 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3466368 3466530 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3466610 3466688 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3466769 3467045 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3467109 3467201 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3467312 3467596 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3467687 3467796 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3467974 3468472 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3468535 3468704 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3468781 3468990 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3469049 3469248 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3469317 3469668 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3469738 3470025 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3470088 3470330 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3470407 3470450 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3470562 3471021 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3471091 3471225 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3471293 3471451 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3471537 3471658 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild exon 3471733 3471949 . + . gene_id "RvY_09470"; transcript_id "RvY_09470.1"; Scaffold004 rebuild transcript 3472543 3473999 . - . gene_id "RvY_09471"; transcript_id "RvY_09471.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3472543 3472683 . - . gene_id "RvY_09471"; transcript_id "RvY_09471.1"; Scaffold004 rebuild exon 3472746 3473131 . - . gene_id "RvY_09471"; transcript_id "RvY_09471.1"; Scaffold004 rebuild exon 3473502 3473623 . - . gene_id "RvY_09471"; transcript_id "RvY_09471.1"; Scaffold004 rebuild exon 3473686 3473999 . - . gene_id "RvY_09471"; transcript_id "RvY_09471.1"; Scaffold004 rebuild transcript 3475165 3477455 . - . gene_id "RvY_09472"; transcript_id "RvY_09472.1"; gene_name "GST_C_CLIC"; annotation "hypothetical protein."; CDD "GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity, however, in other subfamily members, the second cysteine is not conserved."; similar_genes "EXC4_CAEEL(e-value:3.4e-09;bit-score:60.0)"; Scaffold004 rebuild exon 3475165 3475463 . - . gene_id "RvY_09472"; transcript_id "RvY_09472.1"; Scaffold004 rebuild exon 3475527 3475701 . - . gene_id "RvY_09472"; transcript_id "RvY_09472.1"; Scaffold004 rebuild exon 3476029 3476191 . - . gene_id "RvY_09472"; transcript_id "RvY_09472.1"; Scaffold004 rebuild exon 3476277 3476419 . - . gene_id "RvY_09472"; transcript_id "RvY_09472.1"; Scaffold004 rebuild exon 3477408 3477455 . - . gene_id "RvY_09472"; transcript_id "RvY_09472.1"; Scaffold004 rebuild transcript 3478719 3480796 . - . gene_id "RvY_09473"; transcript_id "RvY_09473.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold004 rebuild exon 3478719 3479102 . - . gene_id "RvY_09473"; transcript_id "RvY_09473.1"; Scaffold004 rebuild exon 3479178 3479548 . - . gene_id "RvY_09473"; transcript_id "RvY_09473.1"; Scaffold004 rebuild exon 3479709 3480413 . - . gene_id "RvY_09473"; transcript_id "RvY_09473.1"; Scaffold004 rebuild exon 3480503 3480539 . - . gene_id "RvY_09473"; transcript_id "RvY_09473.1"; Scaffold004 rebuild exon 3480659 3480796 . - . gene_id "RvY_09473"; transcript_id "RvY_09473.1"; Scaffold004 rebuild transcript 3484934 3487269 . + . gene_id "RvY_09474"; transcript_id "RvY_09474.1"; annotation "hypothetical protein."; Pfam "[DUF1115]|[RWD]"; Scaffold004 rebuild exon 3484934 3485131 . + . gene_id "RvY_09474"; transcript_id "RvY_09474.1"; Scaffold004 rebuild exon 3486030 3486147 . + . gene_id "RvY_09474"; transcript_id "RvY_09474.1"; Scaffold004 rebuild exon 3486297 3486668 . + . gene_id "RvY_09474"; transcript_id "RvY_09474.1"; Scaffold004 rebuild exon 3486974 3487269 . + . gene_id "RvY_09474"; transcript_id "RvY_09474.1"; Scaffold004 rebuild transcript 3488592 3492760 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; gene_name "ARAP"; annotation "Arf-GAP, Rho-GAP domain, ANK repeat and PH domain-containing protein"; Pfam "[PH]|[RhoGAP]"; CDD "RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold004 rebuild exon 3488592 3488652 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3488753 3488885 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3488954 3489612 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3489699 3489760 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3489839 3489906 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3489996 3490306 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3490365 3490625 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3490716 3490894 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3490972 3491091 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3491215 3491328 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3491403 3491573 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3491634 3491817 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3491890 3492029 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3492111 3492307 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3492394 3492438 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3492507 3492597 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild exon 3492686 3492760 . + . gene_id "RvY_09475"; transcript_id "RvY_09475.1"; Scaffold004 rebuild transcript 3493197 3498369 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; gene_name "ETS"; annotation "putative Protein C-ets-2"; Pfam "[SAM_PNT] Sterile alpha motif (SAM)/Pointed domain|[Ets] Ets-domain"; KO "K02678"; similar_genes "ETS2_CHICK(e-value:2.7e-47;bit-score:186.0)"; Scaffold004 rebuild exon 3493197 3493302 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; Scaffold004 rebuild exon 3493364 3493595 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; Scaffold004 rebuild exon 3493665 3494036 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; Scaffold004 rebuild exon 3494173 3494373 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; Scaffold004 rebuild exon 3494442 3494561 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; Scaffold004 rebuild exon 3498141 3498369 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.1"; Scaffold004 rebuild transcript 3493197 3495012 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; gene_name "ETS"; annotation "putative Protein C-ets-2"; Pfam "[SAM_PNT] Sterile alpha motif (SAM)/Pointed domain|[Ets] Ets-domain"; KO "K02678"; similar_genes "ETS2_CHICK(e-value:2.7e-47;bit-score:186.0)"; Scaffold004 rebuild exon 3493197 3493302 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; Scaffold004 rebuild exon 3493364 3493595 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; Scaffold004 rebuild exon 3493665 3494036 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; Scaffold004 rebuild exon 3494173 3494373 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; Scaffold004 rebuild exon 3494442 3494561 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; Scaffold004 rebuild exon 3494955 3495012 . - . gene_id "RvY_09476"; transcript_id "RvY_09476.2"; Scaffold004 rebuild transcript 3504057 3506651 . - . gene_id "RvY_09477"; transcript_id "RvY_09477.1"; annotation "hypothetical protein."; Pfam "[A_deamin] Adenosine-deaminase (editase) domain|[dsrm] Double-stranded RNA binding motif"; Scaffold004 rebuild exon 3504057 3505378 . - . gene_id "RvY_09477"; transcript_id "RvY_09477.1"; Scaffold004 rebuild exon 3505446 3505982 . - . gene_id "RvY_09477"; transcript_id "RvY_09477.1"; Scaffold004 rebuild exon 3506039 3506207 . - . gene_id "RvY_09477"; transcript_id "RvY_09477.1"; Scaffold004 rebuild exon 3506317 3506375 . - . gene_id "RvY_09477"; transcript_id "RvY_09477.1"; Scaffold004 rebuild exon 3506450 3506651 . - . gene_id "RvY_09477"; transcript_id "RvY_09477.1"; Scaffold004 rebuild transcript 3507412 3509879 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; gene_name "GBP"; annotation "Atlastin"; Pfam "[GBP] Guanylate-binding protein, N-terminal domain"; CDD "Guanylate-binding protein, N-terminal domain. Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP."; EC "EC3.6.5.-"; similar_genes "ATLAS_DROME(e-value:9.2e-118;bit-score:420.0)"; Scaffold004 rebuild exon 3507412 3507651 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3507778 3508023 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3508087 3508287 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3508385 3508523 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3508605 3508732 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3508853 3508909 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3508973 3509044 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3509110 3509541 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild exon 3509727 3509879 . + . gene_id "RvY_09478"; transcript_id "RvY_09478.1"; Scaffold004 rebuild transcript 3510496 3511263 . - . gene_id "RvY_09479"; transcript_id "RvY_09479.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat"; Scaffold004 rebuild exon 3510496 3511263 . - . gene_id "RvY_09479"; transcript_id "RvY_09479.1"; Scaffold004 rebuild transcript 3512109 3513280 . - . gene_id "RvY_09480"; transcript_id "RvY_09480.1"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; similar_genes "SODC4_DICDI(e-value:6.2e-15;bit-score:79.0)"; Scaffold004 rebuild exon 3512109 3512308 . - . gene_id "RvY_09480"; transcript_id "RvY_09480.1"; Scaffold004 rebuild exon 3512401 3512524 . - . gene_id "RvY_09480"; transcript_id "RvY_09480.1"; Scaffold004 rebuild exon 3512651 3513280 . - . gene_id "RvY_09480"; transcript_id "RvY_09480.1"; Scaffold004 rebuild transcript 3513821 3516535 . - . gene_id "RvY_09481"; transcript_id "RvY_09481.1"; gene_name "NOC3"; annotation "hypothetical protein."; Pfam "[NOC3p] Nucleolar complex-associated protein|[CBF] CBF/Mak21 family"; CDD "Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]"; KO "K14834"; Scaffold004 rebuild exon 3513821 3514288 . - . gene_id "RvY_09481"; transcript_id "RvY_09481.1"; Scaffold004 rebuild exon 3514836 3515348 . - . gene_id "RvY_09481"; transcript_id "RvY_09481.1"; Scaffold004 rebuild exon 3515440 3515763 . - . gene_id "RvY_09481"; transcript_id "RvY_09481.1"; Scaffold004 rebuild exon 3515825 3516535 . - . gene_id "RvY_09481"; transcript_id "RvY_09481.1"; Scaffold004 rebuild transcript 3519145 3519800 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3519145 3519214 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.1"; Scaffold004 rebuild exon 3519275 3519338 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.1"; Scaffold004 rebuild exon 3519419 3519800 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.1"; Scaffold004 rebuild transcript 3518683 3519148 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3518683 3518695 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.2"; Scaffold004 rebuild exon 3518790 3519148 . - . gene_id "RvY_09482"; transcript_id "RvY_09482.2"; Scaffold004 rebuild transcript 3518827 3526747 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; annotation "hypothetical protein."; Pfam "[ELM2]|[zf-C2H2] Zinc finger, C2H2 type|(1)[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-C2H2_6] C2H2-type zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "ZN541_MOUSE(e-value:2.9e-23;bit-score:106.0)"; Scaffold004 rebuild exon 3518827 3518959 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3519292 3519858 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3520109 3520337 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3521942 3522131 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3522481 3522590 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3522676 3522784 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3522853 3523302 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3523447 3523780 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3523898 3524335 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3525150 3525279 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3525347 3525396 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3525479 3525571 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3525641 3525918 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3525986 3526222 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3526306 3526580 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild exon 3526651 3526747 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.1"; Scaffold004 rebuild transcript 3519483 3526584 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; annotation "hypothetical protein."; Pfam "[ELM2]|[zf-C2H2] Zinc finger, C2H2 type|(1)[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-C2H2_6] C2H2-type zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "ZN541_MOUSE(e-value:2.9e-23;bit-score:106.0)"; Scaffold004 rebuild exon 3519483 3519858 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3520109 3520337 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3521942 3522131 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3522481 3522590 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3522676 3522784 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3522853 3523302 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3523447 3523780 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3523898 3524335 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3525150 3525279 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3525347 3525396 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3525479 3525571 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3525641 3525918 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3525986 3526222 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild exon 3526306 3526584 . + . gene_id "RvY_09483"; transcript_id "RvY_09483.2"; Scaffold004 rebuild transcript 3527153 3528867 . - . gene_id "RvY_09484"; transcript_id "RvY_09484.1"; gene_name "TJP4"; annotation "tight junction protein 4 (peripheral)"; KO "K06105"; Scaffold004 rebuild exon 3527153 3527536 . - . gene_id "RvY_09484"; transcript_id "RvY_09484.1"; Scaffold004 rebuild exon 3527620 3527703 . - . gene_id "RvY_09484"; transcript_id "RvY_09484.1"; Scaffold004 rebuild exon 3528398 3528505 . - . gene_id "RvY_09484"; transcript_id "RvY_09484.1"; Scaffold004 rebuild exon 3528614 3528680 . - . gene_id "RvY_09484"; transcript_id "RvY_09484.1"; Scaffold004 rebuild exon 3528758 3528867 . - . gene_id "RvY_09484"; transcript_id "RvY_09484.1"; Scaffold004 rebuild transcript 3529310 3530224 . + . gene_id "RvY_09485"; transcript_id "RvY_09485.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3529310 3529567 . + . gene_id "RvY_09485"; transcript_id "RvY_09485.1"; Scaffold004 rebuild exon 3529644 3529710 . + . gene_id "RvY_09485"; transcript_id "RvY_09485.1"; Scaffold004 rebuild exon 3529899 3530224 . + . gene_id "RvY_09485"; transcript_id "RvY_09485.1"; Scaffold004 rebuild transcript 3530819 3532489 . - . gene_id "RvY_09486"; transcript_id "RvY_09486.1"; gene_name "MYOD"; annotation "putative Transcription factor SUM-1"; Pfam "[Basic] Myogenic Basic domain|[HLH] Helix-loop-helix DNA-binding domain"; KO "K09064"; similar_genes "SUM1_LYTVA(e-value:1.0e-29;bit-score:128.0)"; Scaffold004 rebuild exon 3530819 3531027 . - . gene_id "RvY_09486"; transcript_id "RvY_09486.1"; Scaffold004 rebuild exon 3531646 3531727 . - . gene_id "RvY_09486"; transcript_id "RvY_09486.1"; Scaffold004 rebuild exon 3531903 3532015 . - . gene_id "RvY_09486"; transcript_id "RvY_09486.1"; Scaffold004 rebuild exon 3532150 3532489 . - . gene_id "RvY_09486"; transcript_id "RvY_09486.1"; Scaffold004 rebuild transcript 3536903 3540237 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; gene_name "MAP3K7"; annotation "Mitogen-activated protein kinase kinase kinase 7"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "EC2.7.11.25"; KO "K04427"; similar_genes "M3K7_BOVIN(e-value:2.7e-64;bit-score:243.0)"; Scaffold004 rebuild exon 3536903 3536953 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3537419 3537455 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3537518 3537591 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3537681 3537804 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3537896 3537944 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3538009 3538095 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3538162 3538249 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3538360 3538396 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3538473 3538542 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3538603 3538661 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3538733 3538942 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3539081 3539218 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3539326 3539372 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3539437 3539785 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild exon 3539981 3540237 . + . gene_id "RvY_09487"; transcript_id "RvY_09487.1"; Scaffold004 rebuild transcript 3540777 3545099 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; gene_name "PFTK"; annotation "Cell division protein kinase 14"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events."; EC "EC2.7.11.22"; KO "K08821"; similar_genes "CDK14_HUMAN(e-value:9.2e-101;bit-score:364.0)"; Scaffold004 rebuild exon 3540777 3540844 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3540920 3541010 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3541079 3541240 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3541509 3541602 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3541821 3541893 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3542008 3542055 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3542166 3542289 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3542365 3542427 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3542565 3542659 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3542845 3542924 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3543009 3543103 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3543183 3543620 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3543818 3544003 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3544444 3544514 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild exon 3545012 3545099 . - . gene_id "RvY_09488"; transcript_id "RvY_09488.1"; Scaffold004 rebuild transcript 3546217 3547905 . + . gene_id "RvY_09489"; transcript_id "RvY_09489.1"; gene_name "METT10D"; annotation "methyltransferase [EC:2.1.1.-]"; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_10] Protein of unknown function (DUF890)|[MTS] Methyltransferase small domain"; EC "EC2.1.1.-"; KO "K11393"; similar_genes "MET10_DANRE(e-value:3.6e-13;bit-score:73.0)"; Scaffold004 rebuild exon 3546217 3546730 . + . gene_id "RvY_09489"; transcript_id "RvY_09489.1"; Scaffold004 rebuild exon 3546816 3547062 . + . gene_id "RvY_09489"; transcript_id "RvY_09489.1"; Scaffold004 rebuild exon 3547130 3547547 . + . gene_id "RvY_09489"; transcript_id "RvY_09489.1"; Scaffold004 rebuild exon 3547630 3547905 . + . gene_id "RvY_09489"; transcript_id "RvY_09489.1"; Scaffold004 rebuild transcript 3548520 3549152 . + . gene_id "RvY_09490"; transcript_id "RvY_09490.1"; gene_name "PRK06461"; annotation "hypothetical protein."; CDD "single-stranded DNA-binding protein; Reviewed"; Scaffold004 rebuild exon 3548520 3549152 . + . gene_id "RvY_09490"; transcript_id "RvY_09490.1"; Scaffold004 rebuild transcript 3549672 3550405 . - . gene_id "RvY_09491"; transcript_id "RvY_09491.1"; gene_name "RP-S30e"; annotation "small subunit ribosomal protein S30e"; Pfam "[Ribosomal_S30] Ribosomal protein S30"; KO "K02983"; similar_genes "RS30_PONAB(e-value:6.6e-23;bit-score:105.0)"; Scaffold004 rebuild exon 3549672 3549883 . - . gene_id "RvY_09491"; transcript_id "RvY_09491.1"; Scaffold004 rebuild exon 3549984 3550137 . - . gene_id "RvY_09491"; transcript_id "RvY_09491.1"; Scaffold004 rebuild exon 3550227 3550317 . - . gene_id "RvY_09491"; transcript_id "RvY_09491.1"; Scaffold004 rebuild exon 3550404 3550405 . - . gene_id "RvY_09491"; transcript_id "RvY_09491.1"; Scaffold004 rebuild transcript 3551214 3554193 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; gene_name "pnp"; annotation "Polyribonucleotide nucleotidyltransferase 1, mitochondrial"; Pfam "[PNPase] Polyribonucleotide nucleotidyltransferase, RNA binding domain|[KH_1] KH domain|[RNase_PH_C] 3' exoribonuclease family, domain 2|[RNase_PH] 3' exoribonuclease family, domain 1"; CDD "polynucleotide phosphorylase/polyadenylase; Provisional"; EC "EC2.7.7.8"; KO "K00962"; similar_genes "PNPT1_MOUSE(e-value:8.0e-66;bit-score:248.0)"; Scaffold004 rebuild exon 3551214 3551254 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3551326 3551715 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3551800 3552570 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3552637 3552810 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3552882 3553237 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3553314 3553616 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3553705 3554011 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild exon 3554085 3554193 . + . gene_id "RvY_09492"; transcript_id "RvY_09492.1"; Scaffold004 rebuild transcript 3554622 3558257 . - . gene_id "RvY_09493"; transcript_id "RvY_09493.1"; gene_name "KLF1_2_4"; annotation "putative Krueppel-like factor 4"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09204"; similar_genes "KLF4_HUMAN(e-value:4.6e-45;bit-score:179.0)"; Scaffold004 rebuild exon 3554622 3554713 . - . gene_id "RvY_09493"; transcript_id "RvY_09493.1"; Scaffold004 rebuild exon 3554803 3554903 . - . gene_id "RvY_09493"; transcript_id "RvY_09493.1"; Scaffold004 rebuild exon 3555107 3555795 . - . gene_id "RvY_09493"; transcript_id "RvY_09493.1"; Scaffold004 rebuild exon 3555883 3556182 . - . gene_id "RvY_09493"; transcript_id "RvY_09493.1"; Scaffold004 rebuild exon 3558135 3558257 . - . gene_id "RvY_09493"; transcript_id "RvY_09493.1"; Scaffold004 rebuild transcript 3561039 3562643 . - . gene_id "RvY_09494"; transcript_id "RvY_09494.1"; gene_name "TRAIP"; annotation "TRAF-interacting protein"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)"; KO "K11985"; Scaffold004 rebuild exon 3561039 3561450 . - . gene_id "RvY_09494"; transcript_id "RvY_09494.1"; Scaffold004 rebuild exon 3561515 3561763 . - . gene_id "RvY_09494"; transcript_id "RvY_09494.1"; Scaffold004 rebuild exon 3561855 3561977 . - . gene_id "RvY_09494"; transcript_id "RvY_09494.1"; Scaffold004 rebuild exon 3562069 3562469 . - . gene_id "RvY_09494"; transcript_id "RvY_09494.1"; Scaffold004 rebuild exon 3562533 3562643 . - . gene_id "RvY_09494"; transcript_id "RvY_09494.1"; Scaffold004 rebuild transcript 3563829 3565035 . + . gene_id "RvY_09495"; transcript_id "RvY_09495.1"; gene_name "PRP8"; annotation "hypothetical protein."; CDD "U5 snRNP spliceosome subunit [RNA processing and modification]"; similar_genes "PRP8_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold004 rebuild exon 3563829 3563879 . + . gene_id "RvY_09495"; transcript_id "RvY_09495.1"; Scaffold004 rebuild exon 3564874 3565035 . + . gene_id "RvY_09495"; transcript_id "RvY_09495.1"; Scaffold004 rebuild transcript 3565140 3567686 . + . gene_id "RvY_09496"; transcript_id "RvY_09496.1"; gene_name "PRP8"; annotation "Pre-mRNA-processing-splicing factor 8"; Pfam "[PRP8_domainIV] PRP8 domain IV core|[PROCT] PROCT (NUC072) domain"; CDD "U5 snRNP spliceosome subunit [RNA processing and modification]"; similar_genes "PRP8_HUMAN(e-value:2.0e-58;bit-score:223.0)"; Scaffold004 rebuild exon 3565140 3565285 . + . gene_id "RvY_09496"; transcript_id "RvY_09496.1"; Scaffold004 rebuild exon 3565374 3565530 . + . gene_id "RvY_09496"; transcript_id "RvY_09496.1"; Scaffold004 rebuild exon 3565813 3566008 . + . gene_id "RvY_09496"; transcript_id "RvY_09496.1"; Scaffold004 rebuild exon 3566035 3566281 . + . gene_id "RvY_09496"; transcript_id "RvY_09496.1"; Scaffold004 rebuild exon 3567284 3567686 . + . gene_id "RvY_09496"; transcript_id "RvY_09496.1"; Scaffold004 rebuild transcript 3567252 3567662 . - . gene_id "RvY_09497"; transcript_id "RvY_09497.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3567252 3567662 . - . gene_id "RvY_09497"; transcript_id "RvY_09497.1"; Scaffold004 rebuild transcript 3568106 3568888 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.1"; annotation "hypothetical protein."; Pfam "[Coa1] Cytochrome oxidase complex assembly protein 1"; Scaffold004 rebuild exon 3568106 3568249 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.1"; Scaffold004 rebuild exon 3568330 3568367 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.1"; Scaffold004 rebuild exon 3568468 3568500 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.1"; Scaffold004 rebuild exon 3568617 3568694 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.1"; Scaffold004 rebuild exon 3568789 3568888 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.1"; Scaffold004 rebuild transcript 3568240 3568888 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.2"; annotation "hypothetical protein."; Pfam "[Coa1] Cytochrome oxidase complex assembly protein 1"; Scaffold004 rebuild exon 3568240 3568249 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.2"; Scaffold004 rebuild exon 3568330 3568367 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.2"; Scaffold004 rebuild exon 3568468 3568694 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.2"; Scaffold004 rebuild exon 3568789 3568888 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.2"; Scaffold004 rebuild transcript 3568240 3568888 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.3"; annotation "hypothetical protein."; Pfam "[Coa1] Cytochrome oxidase complex assembly protein 1"; Scaffold004 rebuild exon 3568240 3568249 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.3"; Scaffold004 rebuild exon 3568330 3568367 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.3"; Scaffold004 rebuild exon 3568468 3568500 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.3"; Scaffold004 rebuild exon 3568564 3568694 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.3"; Scaffold004 rebuild exon 3568789 3568888 . - . gene_id "RvY_09498"; transcript_id "RvY_09498.3"; Scaffold004 rebuild transcript 3569252 3569600 . + . gene_id "RvY_09499"; transcript_id "RvY_09499.1"; gene_name "COX7C"; annotation "cytochrome c oxidase subunit VIIc [EC:1.9.3.1]"; Pfam "[COX7C] Cytochrome c oxidase subunit VIIc"; CDD "Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits."; EC "EC1.9.3.1"; KO "K02272"; Scaffold004 rebuild exon 3569252 3569374 . + . gene_id "RvY_09499"; transcript_id "RvY_09499.1"; Scaffold004 rebuild exon 3569457 3569600 . + . gene_id "RvY_09499"; transcript_id "RvY_09499.1"; Scaffold004 rebuild transcript 3573186 3585651 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; gene_name "JAGGED"; annotation "jagged"; Pfam "[hEGF] Human growth factor-like EGF|[DSL] Delta serrate ligand|[MNNL] N terminus of Notch ligand|[EGF] EGF-like domain"; KO "K06052"; similar_genes "SVEP1_RAT(e-value:2.1e-13;bit-score:74.0)"; Scaffold004 rebuild exon 3573186 3573323 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3573643 3573996 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3580445 3580499 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3580572 3580829 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3581004 3581058 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3584171 3584304 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3584392 3584625 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3584695 3584979 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild exon 3585056 3585651 . + . gene_id "RvY_09500"; transcript_id "RvY_09500.1"; Scaffold004 rebuild transcript 3586539 3590269 . - . gene_id "RvY_09501"; transcript_id "RvY_09501.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3586539 3586914 . - . gene_id "RvY_09501"; transcript_id "RvY_09501.1"; Scaffold004 rebuild exon 3587205 3587821 . - . gene_id "RvY_09501"; transcript_id "RvY_09501.1"; Scaffold004 rebuild exon 3588124 3588482 . - . gene_id "RvY_09501"; transcript_id "RvY_09501.1"; Scaffold004 rebuild exon 3588716 3589730 . - . gene_id "RvY_09501"; transcript_id "RvY_09501.1"; Scaffold004 rebuild exon 3589901 3590269 . - . gene_id "RvY_09501"; transcript_id "RvY_09501.1"; Scaffold004 rebuild transcript 3591292 3591927 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.2"; gene_name "PTZ00146"; annotation "hypothetical protein."; CDD "fibrillarin; Provisional"; similar_genes "(2)FA98B_MOUSE(e-value:3.0e-10;bit-score:63.0)(3)ROA1_SCHAM(e-value:4.0e-10;bit-score:63.0)"; Scaffold004 rebuild exon 3591292 3591331 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.2"; Scaffold004 rebuild exon 3591427 3591605 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.2"; Scaffold004 rebuild exon 3591709 3591927 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.2"; Scaffold004 rebuild transcript 3591292 3591927 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.3"; gene_name "PTZ00146"; annotation "hypothetical protein."; CDD "fibrillarin; Provisional"; similar_genes "(2)FA98B_MOUSE(e-value:3.0e-10;bit-score:63.0)(3)ROA1_SCHAM(e-value:4.0e-10;bit-score:63.0)"; Scaffold004 rebuild exon 3591292 3591328 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.3"; Scaffold004 rebuild exon 3591427 3591605 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.3"; Scaffold004 rebuild exon 3591709 3591927 . - . gene_id "RvY_09502"; transcript_id "RvY_09502.3"; Scaffold004 rebuild transcript 3592635 3594411 . - . gene_id "RvY_09503"; transcript_id "RvY_09503.1"; annotation "hypothetical protein."; Pfam "[Mob1_phocein] Mob1/phocein family"; Scaffold004 rebuild exon 3592635 3593137 . - . gene_id "RvY_09503"; transcript_id "RvY_09503.1"; Scaffold004 rebuild exon 3593243 3593367 . - . gene_id "RvY_09503"; transcript_id "RvY_09503.1"; Scaffold004 rebuild exon 3593828 3593924 . - . gene_id "RvY_09503"; transcript_id "RvY_09503.1"; Scaffold004 rebuild exon 3594032 3594210 . - . gene_id "RvY_09503"; transcript_id "RvY_09503.1"; Scaffold004 rebuild exon 3594278 3594411 . - . gene_id "RvY_09503"; transcript_id "RvY_09503.1"; Scaffold004 rebuild transcript 3597475 3599497 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; gene_name "K00753"; annotation "glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214]"; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "EC2.4.1.214"; KO "K00753"; similar_genes "FUCTA_DROME(e-value:5.0e-21;bit-score:99.0)"; Scaffold004 rebuild exon 3597475 3598101 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; Scaffold004 rebuild exon 3598192 3598307 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; Scaffold004 rebuild exon 3598538 3598847 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; Scaffold004 rebuild exon 3598996 3599048 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; Scaffold004 rebuild exon 3599120 3599338 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; Scaffold004 rebuild exon 3599410 3599497 . + . gene_id "RvY_09504"; transcript_id "RvY_09504.1"; Scaffold004 rebuild transcript 3600359 3604507 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; gene_name "eIF-4F"; annotation "translation initiation factor eIF-4F"; Pfam "[MA3]|[W2] eIF4-gamma/eIF5/eIF2-epsilon|[MIF4G]"; KO "K03260"; Scaffold004 rebuild exon 3600359 3600570 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3600649 3600742 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3601000 3601117 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3601205 3601418 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3601480 3601729 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3602072 3602204 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3602309 3602472 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3602533 3603039 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3603328 3603438 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3603533 3603798 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3603995 3604061 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3604132 3604221 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3604308 3604410 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild exon 3604479 3604507 . - . gene_id "RvY_09505"; transcript_id "RvY_09505.1"; Scaffold004 rebuild transcript 3609258 3611387 . + . gene_id "RvY_09506"; transcript_id "RvY_09506.1"; gene_name "BAH_BAHCC1"; annotation "hypothetical protein."; Pfam "[BAH]"; CDD "BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions."; Scaffold004 rebuild exon 3609258 3610133 . + . gene_id "RvY_09506"; transcript_id "RvY_09506.1"; Scaffold004 rebuild exon 3610414 3610570 . + . gene_id "RvY_09506"; transcript_id "RvY_09506.1"; Scaffold004 rebuild exon 3610657 3610825 . + . gene_id "RvY_09506"; transcript_id "RvY_09506.1"; Scaffold004 rebuild exon 3610976 3611099 . + . gene_id "RvY_09506"; transcript_id "RvY_09506.1"; Scaffold004 rebuild exon 3611289 3611387 . + . gene_id "RvY_09506"; transcript_id "RvY_09506.1"; Scaffold004 rebuild transcript 3611959 3614659 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; gene_name "SRP54"; annotation "Signal recognition particle 54 kDa protein"; Pfam "[SRP54_N] SRP54-type protein, helical bundle domain|[cobW] CobW/HypB/UreG, nucleotide-binding domain|[SRP54] SRP54-type protein, GTPase domain|[SRP_SPB] Signal peptide binding domain|[AAA_33] AAA domain"; CDD "signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model."; KO "K03106"; similar_genes "SRP54_MOUSE(e-value:6.7e-235;bit-score:809.0)"; Scaffold004 rebuild exon 3611959 3612059 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3612129 3612224 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3612287 3612457 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3612671 3612853 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3612913 3612999 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3613077 3613177 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3613284 3613372 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3613476 3613535 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3613610 3613760 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3613823 3613947 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3614034 3614138 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3614213 3614297 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3614406 3614497 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild exon 3614582 3614659 . - . gene_id "RvY_09507"; transcript_id "RvY_09507.1"; Scaffold004 rebuild transcript 3615013 3615375 . - . gene_id "RvY_09508"; transcript_id "RvY_09508.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3615013 3615125 . - . gene_id "RvY_09508"; transcript_id "RvY_09508.1"; Scaffold004 rebuild exon 3615189 3615375 . - . gene_id "RvY_09508"; transcript_id "RvY_09508.1"; Scaffold004 rebuild transcript 3615918 3616470 . + . gene_id "RvY_09509"; transcript_id "RvY_09509.1"; annotation "hypothetical protein."; Pfam "[Endosulfine] cAMP-regulated phosphoprotein/endosulfine conserved region"; Scaffold004 rebuild exon 3615918 3616071 . + . gene_id "RvY_09509"; transcript_id "RvY_09509.1"; Scaffold004 rebuild exon 3616241 3616470 . + . gene_id "RvY_09509"; transcript_id "RvY_09509.1"; Scaffold004 rebuild transcript 3616951 3621524 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; gene_name "2A1904"; annotation "putative Sodium/potassium/calcium exchanger 3"; Pfam "[Na_Ca_ex] Sodium/calcium exchanger protein"; CDD "K+-dependent Na+/Ca+ exchanger."; KO "K13751"; similar_genes "NCKX3_HUMAN(e-value:5.8e-41;bit-score:165.0)"; Scaffold004 rebuild exon 3616951 3617211 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3617291 3617431 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3617504 3617590 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3617678 3617744 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3617821 3617985 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3618098 3618231 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3618307 3618406 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3618465 3618564 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3618635 3618765 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3618880 3618933 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3619014 3619039 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3619129 3619203 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3619335 3619441 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3619559 3619597 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3619667 3619712 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3619788 3619939 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3620003 3620500 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild exon 3621428 3621524 . - . gene_id "RvY_09510"; transcript_id "RvY_09510.1"; Scaffold004 rebuild transcript 3623865 3625177 . + . gene_id "RvY_09511"; transcript_id "RvY_09511.1"; gene_name "DEGS"; annotation "Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2"; Pfam "[FA_desaturase] Fatty acid desaturase|[Lipid_DES] Sphingolipid Delta4-desaturase (DES)"; CDD "The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase."; EC "EC1.-.-.-|EC1.14.-.-"; KO "K04712"; similar_genes "DEGS2_MOUSE(e-value:1.2e-60;bit-score:231.0)"; Scaffold004 rebuild exon 3623865 3623955 . + . gene_id "RvY_09511"; transcript_id "RvY_09511.1"; Scaffold004 rebuild exon 3624025 3624773 . + . gene_id "RvY_09511"; transcript_id "RvY_09511.1"; Scaffold004 rebuild exon 3624845 3625177 . + . gene_id "RvY_09511"; transcript_id "RvY_09511.1"; Scaffold004 rebuild transcript 3626200 3626337 . - . gene_id "RvY_09512"; transcript_id "RvY_09512.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3626200 3626337 . - . gene_id "RvY_09512"; transcript_id "RvY_09512.1"; Scaffold004 rebuild transcript 3627309 3630497 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; gene_name "WD40"; annotation "putative WD repeat-containing protein 26"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR26_XENTR(e-value:1.8e-29;bit-score:127.0)"; Scaffold004 rebuild exon 3627309 3627364 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3627489 3627538 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3627655 3627772 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3627860 3628086 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3628178 3628320 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3628395 3628520 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3628626 3628787 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3628867 3629005 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3629097 3629253 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3629347 3629444 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3629504 3629640 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3629702 3629758 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3629843 3629942 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3630008 3630311 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild exon 3630416 3630497 . - . gene_id "RvY_09513"; transcript_id "RvY_09513.5"; Scaffold004 rebuild transcript 3635537 3640601 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; annotation "hypothetical protein."; Pfam "[VWC] von Willebrand factor type C domain"; Scaffold004 rebuild exon 3635537 3635786 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3637030 3637171 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3637506 3637675 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3637750 3637935 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3638264 3638440 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3638535 3638657 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3638753 3639142 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3639231 3639848 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3639918 3640073 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild exon 3640324 3640601 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.1"; Scaffold004 rebuild transcript 3632789 3640601 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; annotation "hypothetical protein."; Pfam "[VWC] von Willebrand factor type C domain"; Scaffold004 rebuild exon 3632789 3632945 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3637030 3637171 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3637506 3637675 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3637750 3637935 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3638264 3638440 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3638535 3638657 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3638753 3639142 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3639231 3639848 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3639918 3640073 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild exon 3640324 3640601 . + . gene_id "RvY_09514"; transcript_id "RvY_09514.2"; Scaffold004 rebuild transcript 3640886 3642676 . - . gene_id "RvY_09515"; transcript_id "RvY_09515.1"; gene_name "fabD"; annotation "putative Probable malonyl-CoA-acyl carrier protein transacylase, mitochondrial"; Pfam "[Acyl_transf_1] Acyl transferase domain"; CDD "malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension."; EC "EC2.3.1.39"; KO "K00645"; similar_genes "FABD_DROME(e-value:6.5e-38;bit-score:155.0)"; Scaffold004 rebuild exon 3640886 3641281 . - . gene_id "RvY_09515"; transcript_id "RvY_09515.1"; Scaffold004 rebuild exon 3641367 3641587 . - . gene_id "RvY_09515"; transcript_id "RvY_09515.1"; Scaffold004 rebuild exon 3641650 3641737 . - . gene_id "RvY_09515"; transcript_id "RvY_09515.1"; Scaffold004 rebuild exon 3641810 3642114 . - . gene_id "RvY_09515"; transcript_id "RvY_09515.1"; Scaffold004 rebuild exon 3642193 3642676 . - . gene_id "RvY_09515"; transcript_id "RvY_09515.1"; Scaffold004 rebuild transcript 3645054 3645821 . + . gene_id "RvY_09516"; transcript_id "RvY_09516.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3645054 3645821 . + . gene_id "RvY_09516"; transcript_id "RvY_09516.1"; Scaffold004 rebuild transcript 3646361 3648453 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3646361 3646711 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; Scaffold004 rebuild exon 3646788 3646856 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; Scaffold004 rebuild exon 3646919 3647045 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; Scaffold004 rebuild exon 3647131 3647249 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; Scaffold004 rebuild exon 3647331 3647980 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; Scaffold004 rebuild exon 3648078 3648453 . - . gene_id "RvY_09517"; transcript_id "RvY_09517.1"; Scaffold004 rebuild transcript 3648548 3648974 . - . gene_id "RvY_09518"; transcript_id "RvY_09518.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3648548 3648588 . - . gene_id "RvY_09518"; transcript_id "RvY_09518.1"; Scaffold004 rebuild exon 3648881 3648974 . - . gene_id "RvY_09518"; transcript_id "RvY_09518.1"; Scaffold004 rebuild transcript 3649243 3651502 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; gene_name "PUF60"; annotation "Poly(U)-binding-splicing factor half pint"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA."; KO "K12838"; similar_genes "PUF68_DROME(e-value:3.7e-53;bit-score:206.0)"; Scaffold004 rebuild exon 3649243 3649290 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3649439 3649686 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3649753 3649966 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3650035 3650162 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3650229 3650297 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3650364 3650466 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3650558 3650680 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3650759 3651058 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3651125 3651314 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild exon 3651393 3651502 . + . gene_id "RvY_09519"; transcript_id "RvY_09519.1"; Scaffold004 rebuild transcript 3652082 3655120 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; annotation "hypothetical protein."; Pfam "[DUF3312]"; Scaffold004 rebuild exon 3652082 3652145 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3652219 3652271 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3652374 3652436 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3652493 3652714 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3652796 3652876 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3652946 3653127 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3653214 3653341 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3653472 3653596 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3653688 3653851 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3654041 3654142 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3654209 3654311 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3654370 3654499 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3654562 3654691 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3654769 3654832 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild exon 3654908 3655120 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.1"; Scaffold004 rebuild transcript 3652082 3655120 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; annotation "hypothetical protein."; Pfam "[DUF3312]"; Scaffold004 rebuild exon 3652082 3652145 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3652219 3652271 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3652374 3652436 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3652493 3652714 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3652796 3652876 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3652946 3653127 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3653214 3653341 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3653472 3653596 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3653688 3653749 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3654041 3654142 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3654209 3654311 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3654370 3654499 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3654562 3654691 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3654769 3654832 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild exon 3654908 3655120 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.2"; Scaffold004 rebuild transcript 3652082 3653906 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; annotation "hypothetical protein."; Pfam "[DUF3312]"; Scaffold004 rebuild exon 3652082 3652145 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3652219 3652271 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3652374 3652436 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3652493 3652714 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3652796 3652876 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3652946 3653127 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3653214 3653341 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3653472 3653596 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild exon 3653688 3653906 . + . gene_id "RvY_09520"; transcript_id "RvY_09520.3"; Scaffold004 rebuild transcript 3655294 3656315 . - . gene_id "RvY_09521"; transcript_id "RvY_09521.1"; gene_name "RNASEH2A"; annotation "putative Ribonuclease H2 subunit A"; Pfam "[RNase_HII] Ribonuclease HII"; CDD "Eukaryotic Ribonuclease HII; putative role in Okazaki fragment removal during replication. Ribonuclease (RNase) HII endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic Scaffold004 rebuild exon 3655294 3656102 . - . gene_id "RvY_09521"; transcript_id "RvY_09521.1"; Scaffold004 rebuild exon 3656207 3656315 . - . gene_id "RvY_09521"; transcript_id "RvY_09521.1"; Scaffold004 rebuild transcript 3656979 3659041 . + . gene_id "RvY_09522"; transcript_id "RvY_09522.1"; gene_name "HDAC1_2"; annotation "Histone deacetylase 1"; Pfam "[Hist_deacetyl] Histone deacetylase domain"; CDD "histone deacetylase; Provisional"; EC "EC3.5.1.98"; KO "K06067"; similar_genes "HDAC1_MOUSE(e-value:3.8e-195;bit-score:677.0)"; Scaffold004 rebuild exon 3656979 3657461 . + . gene_id "RvY_09522"; transcript_id "RvY_09522.1"; Scaffold004 rebuild exon 3657629 3658127 . + . gene_id "RvY_09522"; transcript_id "RvY_09522.1"; Scaffold004 rebuild exon 3658407 3659041 . + . gene_id "RvY_09522"; transcript_id "RvY_09522.1"; Scaffold004 rebuild transcript 3659867 3661895 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; gene_name "CPDc"; annotation "putative Mitochondrial import inner membrane translocase subunit TIM50-C"; Pfam "[NIF] NLI interacting factor-like phosphatase"; CDD "catalytic domain of ctd-like phosphatases."; similar_genes "TI50C_DROME(e-value:9.5e-35;bit-score:145.0)"; Scaffold004 rebuild exon 3659867 3659971 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3660046 3660149 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3660244 3660400 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3660469 3660567 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3660650 3660757 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3660820 3660939 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3660995 3661053 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3661132 3661153 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3661260 3661291 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild exon 3661373 3661895 . - . gene_id "RvY_09523"; transcript_id "RvY_09523.1"; Scaffold004 rebuild transcript 3662245 3665109 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; gene_name "K01376"; annotation "putative Probable Ufm1-specific protease"; Pfam "[Peptidase_C78] Peptidase family C78"; EC "EC3.4.22.-"; KO "K01376"; similar_genes "UFSP_ARATH(e-value:2.7e-28;bit-score:123.0)"; Scaffold004 rebuild exon 3662245 3662277 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3662378 3662552 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3662637 3662761 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3662821 3663034 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3663111 3663382 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3663443 3663697 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3663788 3663869 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3663960 3664106 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3664180 3664288 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3664374 3664560 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3664637 3664739 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3664822 3664946 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild exon 3665008 3665109 . + . gene_id "RvY_09524"; transcript_id "RvY_09524.1"; Scaffold004 rebuild transcript 3665274 3666026 . - . gene_id "RvY_09525"; transcript_id "RvY_09525.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3665274 3665392 . - . gene_id "RvY_09525"; transcript_id "RvY_09525.1"; Scaffold004 rebuild exon 3665527 3665622 . - . gene_id "RvY_09525"; transcript_id "RvY_09525.1"; Scaffold004 rebuild exon 3665687 3665888 . - . gene_id "RvY_09525"; transcript_id "RvY_09525.1"; Scaffold004 rebuild exon 3665997 3666026 . - . gene_id "RvY_09525"; transcript_id "RvY_09525.1"; Scaffold004 rebuild transcript 3666925 3667717 . + . gene_id "RvY_09526"; transcript_id "RvY_09526.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_S10] Ribosomal protein S10p/S20e"; Scaffold004 rebuild exon 3666925 3667074 . + . gene_id "RvY_09526"; transcript_id "RvY_09526.1"; Scaffold004 rebuild exon 3667221 3667351 . + . gene_id "RvY_09526"; transcript_id "RvY_09526.1"; Scaffold004 rebuild exon 3667420 3667717 . + . gene_id "RvY_09526"; transcript_id "RvY_09526.1"; Scaffold004 rebuild transcript 3668134 3669485 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; gene_name "rpiA"; annotation "ribose 5-phosphate isomerase A [EC:5.3.1.6]"; Pfam "[Rib_5-P_isom_A] Ribose 5-phosphate isomerase A (phosphoriboisomerase A)"; CDD "ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway."; EC "EC5.3.1.6"; KO "K01807"; similar_genes "RPIA_CANAL(e-value:2.1e-13;bit-score:74.0)"; Scaffold004 rebuild exon 3668134 3668231 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild exon 3668383 3668488 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild exon 3668588 3668771 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild exon 3668837 3668970 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild exon 3669071 3669192 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild exon 3669269 3669338 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild exon 3669420 3669485 . - . gene_id "RvY_09527"; transcript_id "RvY_09527.1"; Scaffold004 rebuild transcript 3669495 3669695 . + . gene_id "RvY_09528"; transcript_id "RvY_09528.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3669495 3669695 . + . gene_id "RvY_09528"; transcript_id "RvY_09528.1"; Scaffold004 rebuild transcript 3669841 3670734 . + . gene_id "RvY_09529"; transcript_id "RvY_09529.1"; annotation "Uncharacterized protein C17orf39"; Pfam "[Vac_ImportDeg] Vacuolar import and degradation protein"; similar_genes "CQ039_HUMAN(e-value:1.1e-73;bit-score:274.0)"; Scaffold004 rebuild exon 3669841 3670083 . + . gene_id "RvY_09529"; transcript_id "RvY_09529.1"; Scaffold004 rebuild exon 3670186 3670365 . + . gene_id "RvY_09529"; transcript_id "RvY_09529.1"; Scaffold004 rebuild exon 3670438 3670734 . + . gene_id "RvY_09529"; transcript_id "RvY_09529.1"; Scaffold004 rebuild transcript 3671261 3671916 . + . gene_id "RvY_09530"; transcript_id "RvY_09530.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3671261 3671336 . + . gene_id "RvY_09530"; transcript_id "RvY_09530.1"; Scaffold004 rebuild exon 3671411 3671502 . + . gene_id "RvY_09530"; transcript_id "RvY_09530.1"; Scaffold004 rebuild exon 3671594 3671705 . + . gene_id "RvY_09530"; transcript_id "RvY_09530.1"; Scaffold004 rebuild exon 3671777 3671916 . + . gene_id "RvY_09530"; transcript_id "RvY_09530.1"; Scaffold004 rebuild transcript 3672186 3674418 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3672186 3672323 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; Scaffold004 rebuild exon 3672376 3672864 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; Scaffold004 rebuild exon 3672995 3673222 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; Scaffold004 rebuild exon 3673320 3673835 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; Scaffold004 rebuild exon 3673897 3674149 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; Scaffold004 rebuild exon 3674219 3674418 . + . gene_id "RvY_09531"; transcript_id "RvY_09531.1"; Scaffold004 rebuild transcript 3674657 3676906 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; gene_name "DLST"; annotation "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial"; Pfam "[2-oxoacid_dh] 2-oxoacid dehydrogenases acyltransferase (catalytic domain)|[Biotin_lipoyl] Biotin-requiring enzyme"; CDD "dihydrolipoamide succinyltransferase; Validated"; EC "EC2.3.1.61"; KO "K00658"; similar_genes "ODO2_TAKRU(e-value:8.0e-100;bit-score:361.0)"; Scaffold004 rebuild exon 3674657 3674791 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3674851 3675018 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3675086 3675237 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3675300 3675430 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3675505 3675602 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3675667 3676110 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3676173 3676228 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3676290 3676364 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3676450 3676496 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3676556 3676592 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3676677 3676725 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild exon 3676832 3676906 . - . gene_id "RvY_09532"; transcript_id "RvY_09532.1"; Scaffold004 rebuild transcript 3677639 3679500 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; gene_name "WARS"; annotation "Tryptophanyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA-synt_1b] tRNA synthetases class I (W and Y)"; CDD "tryptophanyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.2"; KO "K01867"; similar_genes "SYWC_MOUSE(e-value:1.1e-143;bit-score:506.0)"; Scaffold004 rebuild exon 3677639 3677816 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3677880 3677988 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3678074 3678193 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3678255 3678437 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3678520 3678733 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3678796 3678969 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3679034 3679174 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild exon 3679321 3679500 . + . gene_id "RvY_09533"; transcript_id "RvY_09533.1"; Scaffold004 rebuild transcript 3680449 3683614 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; gene_name "STIP1"; annotation "putative Stress-induced-phosphoprotein 1"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; KO "K09553"; similar_genes "STIP1_CRIGR(e-value:6.0e-45;bit-score:178.0)"; Scaffold004 rebuild exon 3680449 3680460 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3680649 3680858 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3681043 3681184 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3681272 3681446 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3681640 3681998 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3682470 3682572 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3682647 3682767 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3682854 3683112 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3683215 3683482 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild exon 3683542 3683614 . + . gene_id "RvY_09534"; transcript_id "RvY_09534.1"; Scaffold004 rebuild transcript 3683837 3686272 . - . gene_id "RvY_09535"; transcript_id "RvY_09535.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3683837 3683969 . - . gene_id "RvY_09535"; transcript_id "RvY_09535.1"; Scaffold004 rebuild exon 3684047 3684443 . - . gene_id "RvY_09535"; transcript_id "RvY_09535.1"; Scaffold004 rebuild exon 3684515 3685630 . - . gene_id "RvY_09535"; transcript_id "RvY_09535.1"; Scaffold004 rebuild exon 3685852 3686272 . - . gene_id "RvY_09535"; transcript_id "RvY_09535.1"; Scaffold004 rebuild transcript 3689214 3691377 . + . gene_id "RvY_09536"; transcript_id "RvY_09536.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3689214 3689415 . + . gene_id "RvY_09536"; transcript_id "RvY_09536.1"; Scaffold004 rebuild exon 3689602 3689829 . + . gene_id "RvY_09536"; transcript_id "RvY_09536.1"; Scaffold004 rebuild exon 3690278 3690345 . + . gene_id "RvY_09536"; transcript_id "RvY_09536.1"; Scaffold004 rebuild exon 3690474 3690881 . + . gene_id "RvY_09536"; transcript_id "RvY_09536.1"; Scaffold004 rebuild exon 3690967 3691377 . + . gene_id "RvY_09536"; transcript_id "RvY_09536.1"; Scaffold004 rebuild transcript 3691730 3693332 . - . gene_id "RvY_09537"; transcript_id "RvY_09537.1"; annotation "hypothetical protein."; Pfam "[FtsJ] FtsJ-like methyltransferase"; EC "EC2.1.1.-"; KO "K14590"; similar_genes "FTSJ1_PONAB(e-value:1.2e-07;bit-score:55.0)"; Scaffold004 rebuild exon 3691730 3692071 . - . gene_id "RvY_09537"; transcript_id "RvY_09537.1"; Scaffold004 rebuild exon 3692134 3692725 . - . gene_id "RvY_09537"; transcript_id "RvY_09537.1"; Scaffold004 rebuild exon 3692884 3693332 . - . gene_id "RvY_09537"; transcript_id "RvY_09537.1"; Scaffold004 rebuild transcript 3693724 3695034 . - . gene_id "RvY_09538"; transcript_id "RvY_09538.1"; gene_name "acyP"; annotation "acylphosphatase [EC:3.6.1.7]"; Pfam "[Acylphosphatase]"; EC "EC3.6.1.7"; KO "K01512"; similar_genes "ACYP2_MELGA(e-value:7.6e-24;bit-score:108.0)"; Scaffold004 rebuild exon 3693724 3693984 . - . gene_id "RvY_09538"; transcript_id "RvY_09538.1"; Scaffold004 rebuild exon 3694040 3694079 . - . gene_id "RvY_09538"; transcript_id "RvY_09538.1"; Scaffold004 rebuild exon 3694137 3694288 . - . gene_id "RvY_09538"; transcript_id "RvY_09538.1"; Scaffold004 rebuild exon 3694939 3695034 . - . gene_id "RvY_09538"; transcript_id "RvY_09538.1"; Scaffold004 rebuild transcript 3695469 3696897 . - . gene_id "RvY_09539"; transcript_id "RvY_09539.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3695469 3696143 . - . gene_id "RvY_09539"; transcript_id "RvY_09539.1"; Scaffold004 rebuild exon 3696252 3696359 . - . gene_id "RvY_09539"; transcript_id "RvY_09539.1"; Scaffold004 rebuild exon 3696453 3696648 . - . gene_id "RvY_09539"; transcript_id "RvY_09539.1"; Scaffold004 rebuild exon 3696734 3696897 . - . gene_id "RvY_09539"; transcript_id "RvY_09539.1"; Scaffold004 rebuild transcript 3697939 3700044 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; annotation "putative Calcium-binding mitochondrial carrier protein SCaMC-3"; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand] EF hand|[EF_hand_3] EF hand|[Mito_carr] Mitochondrial carrier protein|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; KO "K14684"; similar_genes "SCMC3_HUMAN(e-value:2.3e-27;bit-score:120.0)"; Scaffold004 rebuild exon 3697939 3698124 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3698287 3698413 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3698508 3698640 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3698769 3698835 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3698906 3699064 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3699145 3699567 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3699625 3699796 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild exon 3699860 3700044 . + . gene_id "RvY_09540"; transcript_id "RvY_09540.1"; Scaffold004 rebuild transcript 3701279 3702171 . + . gene_id "RvY_09541"; transcript_id "RvY_09541.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3701279 3701398 . + . gene_id "RvY_09541"; transcript_id "RvY_09541.1"; Scaffold004 rebuild exon 3701462 3701529 . + . gene_id "RvY_09541"; transcript_id "RvY_09541.1"; Scaffold004 rebuild exon 3701593 3701795 . + . gene_id "RvY_09541"; transcript_id "RvY_09541.1"; Scaffold004 rebuild exon 3701922 3701976 . + . gene_id "RvY_09541"; transcript_id "RvY_09541.1"; Scaffold004 rebuild exon 3702036 3702171 . + . gene_id "RvY_09541"; transcript_id "RvY_09541.1"; Scaffold004 rebuild transcript 3702660 3711580 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; gene_name "K01529"; annotation "Activating signal cointegrator 1 complex subunit 3"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[Sec63] Sec63 Brl domain|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II helicase [General function prediction only]"; EC "EC3.6.1.-"; KO "K01529"; similar_genes "HELC1_HUMAN(e-value:1.8e-84;bit-score:310.0)"; Scaffold004 rebuild exon 3702660 3702914 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3702990 3703187 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3703253 3703373 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3703443 3703594 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3703679 3703853 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3703922 3704115 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3704178 3704352 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3704472 3704730 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3704837 3704957 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3705031 3705311 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3705377 3705643 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3705777 3706410 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3706490 3706746 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3706819 3707224 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3707340 3707606 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3707684 3707927 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3707999 3708176 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3708648 3708933 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3708994 3709242 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3709326 3709490 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3709556 3709894 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3709992 3710114 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3710175 3710333 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3710419 3710595 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3710675 3711291 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild exon 3711355 3711580 . - . gene_id "RvY_09542"; transcript_id "RvY_09542.1"; Scaffold004 rebuild transcript 3712257 3714956 . + . gene_id "RvY_09543"; transcript_id "RvY_09543.1"; gene_name "Vps35"; annotation "Vacuolar protein sorting-associated protein 35"; Pfam "[Vps35] Vacuolar protein sorting-associated protein 35"; CDD "Vacuolar protein sorting-associated protein 35. Vacuolar protein sorting-associated protein (Vps) 35 is one of around 50 proteins involved in protein trafficking. In particular, Vps35 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps26 and Vps29. Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains."; similar_genes "VPS35_BOVIN(e-value:3.4e-60;bit-score:229.0)"; Scaffold004 rebuild exon 3712257 3712555 . + . gene_id "RvY_09543"; transcript_id "RvY_09543.1"; Scaffold004 rebuild exon 3712625 3712716 . + . gene_id "RvY_09543"; transcript_id "RvY_09543.1"; Scaffold004 rebuild exon 3712785 3713100 . + . gene_id "RvY_09543"; transcript_id "RvY_09543.1"; Scaffold004 rebuild exon 3713256 3713913 . + . gene_id "RvY_09543"; transcript_id "RvY_09543.1"; Scaffold004 rebuild exon 3713976 3714956 . + . gene_id "RvY_09543"; transcript_id "RvY_09543.1"; Scaffold004 rebuild transcript 3715825 3717105 . + . gene_id "RvY_09544"; transcript_id "RvY_09544.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3715825 3715910 . + . gene_id "RvY_09544"; transcript_id "RvY_09544.1"; Scaffold004 rebuild exon 3715990 3716138 . + . gene_id "RvY_09544"; transcript_id "RvY_09544.1"; Scaffold004 rebuild exon 3716232 3716384 . + . gene_id "RvY_09544"; transcript_id "RvY_09544.1"; Scaffold004 rebuild exon 3716489 3716649 . + . gene_id "RvY_09544"; transcript_id "RvY_09544.1"; Scaffold004 rebuild exon 3716716 3717105 . + . gene_id "RvY_09544"; transcript_id "RvY_09544.1"; Scaffold004 rebuild transcript 3717907 3720430 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; gene_name "RhoGAP"; annotation "hypothetical protein."; Pfam "[RhoGAP]"; CDD "RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, Scaffold004 rebuild exon 3717907 3718011 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3718096 3718250 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3718348 3718444 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3718506 3718588 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3718663 3718852 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3718919 3719144 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3719277 3719428 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3719504 3719842 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3719910 3720110 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3720196 3720320 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild exon 3720409 3720430 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.1"; Scaffold004 rebuild transcript 3717907 3720324 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; gene_name "RhoGAP"; annotation "hypothetical protein."; Pfam "[RhoGAP]"; CDD "RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, Scaffold004 rebuild exon 3717907 3718011 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3718096 3718250 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3718348 3718444 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3718506 3718588 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3718663 3718852 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3718919 3719144 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3719277 3719428 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3719504 3719842 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3719910 3720110 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild exon 3720196 3720324 . + . gene_id "RvY_09545"; transcript_id "RvY_09545.2"; Scaffold004 rebuild transcript 3722158 3728981 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; gene_name "INO80"; annotation "Putative DNA helicase Ino80"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[DBINO] DNA-binding domain"; EC "EC3.6.1.-"; KO "K11665"; similar_genes "INO80_DROME(e-value:5.6e-124;bit-score:441.0)"; Scaffold004 rebuild exon 3722158 3722519 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3722608 3723018 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3723095 3723243 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3723320 3723375 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3723439 3723715 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3723806 3724119 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3724201 3724434 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3724499 3724823 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3724934 3725639 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3725715 3725799 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3725888 3726005 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3726087 3726172 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3726233 3726611 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3726726 3726816 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3726883 3727228 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3727313 3727538 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3727609 3727904 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3728007 3728847 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild exon 3728941 3728981 . + . gene_id "RvY_09546"; transcript_id "RvY_09546.1"; Scaffold004 rebuild transcript 3729202 3735771 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; gene_name "DEP_DEPDC5-like"; annotation "putative DEP domain-containing protein 5"; Pfam "[DUF3608]"; CDD "DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function."; similar_genes "DEPD5_HUMAN(e-value:1.8e-31;bit-score:134.0)"; Scaffold004 rebuild exon 3729202 3729323 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3729418 3729696 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3729956 3730135 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3730195 3730536 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3730763 3731084 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3731141 3731696 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3731928 3732585 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3732801 3733214 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3733300 3733630 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3733932 3734633 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3734711 3734731 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3734812 3735024 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3735102 3735223 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3735305 3735460 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild exon 3735687 3735771 . - . gene_id "RvY_09547"; transcript_id "RvY_09547.1"; Scaffold004 rebuild transcript 3736502 3739380 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; gene_name "TAP_C"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[Tap-RNA_bind] Tap, RNA-binding|[TAP_C] TAP C-terminal domain"; CDD "C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain."; KO "K14284"; Scaffold004 rebuild exon 3736502 3736607 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3736678 3736783 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3736849 3736922 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3736996 3737123 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3737248 3737331 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3737400 3737504 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3737589 3738295 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3738529 3738737 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3738803 3738878 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3738949 3739176 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild exon 3739281 3739380 . + . gene_id "RvY_09548"; transcript_id "RvY_09548.1"; Scaffold004 rebuild transcript 3739702 3746052 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; annotation "hypothetical protein."; Pfam "[ACBP] Acyl CoA binding protein|[GOLD_2] Golgi-dynamics membrane-trafficking"; similar_genes "GCP60_RAT(e-value:4.3e-20;bit-score:96.0)"; Scaffold004 rebuild exon 3739702 3739925 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3740001 3740125 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3740471 3740714 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3740782 3740926 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3742675 3742719 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3742824 3742968 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3743059 3743199 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3745683 3745824 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild exon 3745887 3746052 . - . gene_id "RvY_09549"; transcript_id "RvY_09549.1"; Scaffold004 rebuild transcript 3747126 3748876 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; gene_name "STKc_CDK_like"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH."; EC "EC2.7.11.22"; similar_genes "CDC22_MEDSA(e-value:2.9e-23;bit-score:106.0)"; Scaffold004 rebuild exon 3747126 3747385 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; Scaffold004 rebuild exon 3747449 3747653 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; Scaffold004 rebuild exon 3747750 3747923 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; Scaffold004 rebuild exon 3748059 3748122 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; Scaffold004 rebuild exon 3748196 3748437 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; Scaffold004 rebuild exon 3748676 3748876 . + . gene_id "RvY_09550"; transcript_id "RvY_09550.1"; Scaffold004 rebuild transcript 3749383 3750579 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3749383 3749608 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.1"; Scaffold004 rebuild exon 3749841 3750153 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.1"; Scaffold004 rebuild exon 3750234 3750412 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.1"; Scaffold004 rebuild exon 3750515 3750579 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.1"; Scaffold004 rebuild transcript 3750264 3751760 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3750264 3750412 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.2"; Scaffold004 rebuild exon 3750515 3750597 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.2"; Scaffold004 rebuild exon 3751108 3751437 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.2"; Scaffold004 rebuild exon 3751507 3751634 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.2"; Scaffold004 rebuild exon 3751704 3751760 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.2"; Scaffold004 rebuild transcript 3749837 3750579 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3749837 3750153 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.3"; Scaffold004 rebuild exon 3750234 3750412 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.3"; Scaffold004 rebuild exon 3750515 3750579 . - . gene_id "RvY_09551"; transcript_id "RvY_09551.3"; Scaffold004 rebuild transcript 3752558 3756237 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; gene_name "BTBD9"; annotation "BTB/POZ domain-containing protein 9"; Pfam "[F5_F8_type_C] F5/8 type C domain|[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; KO "K10481"; similar_genes "BTBD9_RAT(e-value:7.2e-16;bit-score:82.0)"; Scaffold004 rebuild exon 3752558 3752739 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3752820 3752949 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3753032 3753128 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3753212 3753285 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3753375 3753434 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3753622 3753831 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3753892 3753955 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3754043 3754131 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3754253 3754348 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3754435 3754473 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3754556 3754693 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3754833 3754856 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3754929 3755019 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3755106 3755230 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3755313 3755407 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3755523 3755674 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild exon 3755963 3756237 . + . gene_id "RvY_09552"; transcript_id "RvY_09552.1"; Scaffold004 rebuild transcript 3757454 3761102 . + . gene_id "RvY_09553"; transcript_id "RvY_09553.1"; gene_name "CD9"; annotation "CD9 antigen"; Pfam "[Tetraspannin] Tetraspanin family"; KO "K06460"; Scaffold004 rebuild exon 3757454 3757513 . + . gene_id "RvY_09553"; transcript_id "RvY_09553.1"; Scaffold004 rebuild exon 3759969 3760352 . + . gene_id "RvY_09553"; transcript_id "RvY_09553.1"; Scaffold004 rebuild exon 3760538 3760759 . + . gene_id "RvY_09553"; transcript_id "RvY_09553.1"; Scaffold004 rebuild exon 3760844 3760927 . + . gene_id "RvY_09553"; transcript_id "RvY_09553.1"; Scaffold004 rebuild exon 3761025 3761102 . + . gene_id "RvY_09553"; transcript_id "RvY_09553.1"; Scaffold004 rebuild transcript 3764435 3766038 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; similar_genes "TSN8_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold004 rebuild exon 3764435 3764500 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3764593 3764709 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3764809 3764857 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3764930 3764973 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765038 3765091 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765189 3765294 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765372 3765397 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765472 3765555 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765625 3765731 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765801 3765894 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild exon 3765982 3766038 . + . gene_id "RvY_09554"; transcript_id "RvY_09554.1"; Scaffold004 rebuild transcript 3766644 3768367 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; gene_name "K01090"; annotation "protein phosphatase [EC:3.1.3.16]"; Pfam "[ubiquitin] Ubiquitin family|[NIF] NLI interacting factor-like phosphatase"; CDD "HAD-superfamily subfamily IIID hydrolase, TIGR. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large ""cap"" domain between motifs 1 and 2 or between 2 and 3, it is formally a ""class III"" HAD."; EC "EC3.1.3.16"; KO "K01090"; similar_genes "UBCP1_DANRE(e-value:2.2e-19;bit-score:93.0)"; Scaffold004 rebuild exon 3766644 3766752 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3766827 3766960 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3767029 3767117 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3767191 3767378 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3767442 3767584 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3767641 3767784 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3767847 3767935 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild exon 3768142 3768367 . - . gene_id "RvY_09555"; transcript_id "RvY_09555.1"; Scaffold004 rebuild transcript 3769103 3769496 . + . gene_id "RvY_09556"; transcript_id "RvY_09556.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3769103 3769204 . + . gene_id "RvY_09556"; transcript_id "RvY_09556.1"; Scaffold004 rebuild exon 3769299 3769496 . + . gene_id "RvY_09556"; transcript_id "RvY_09556.1"; Scaffold004 rebuild transcript 3769599 3770754 . + . gene_id "RvY_09557"; transcript_id "RvY_09557.1"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; Scaffold004 rebuild exon 3769599 3769696 . + . gene_id "RvY_09557"; transcript_id "RvY_09557.1"; Scaffold004 rebuild exon 3770243 3770535 . + . gene_id "RvY_09557"; transcript_id "RvY_09557.1"; Scaffold004 rebuild exon 3770603 3770754 . + . gene_id "RvY_09557"; transcript_id "RvY_09557.1"; Scaffold004 rebuild transcript 3770845 3771242 . + . gene_id "RvY_09558"; transcript_id "RvY_09558.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3770845 3771032 . + . gene_id "RvY_09558"; transcript_id "RvY_09558.1"; Scaffold004 rebuild exon 3771116 3771242 . + . gene_id "RvY_09558"; transcript_id "RvY_09558.1"; Scaffold004 rebuild transcript 3771307 3772264 . - . gene_id "RvY_09559"; transcript_id "RvY_09559.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3771307 3771648 . - . gene_id "RvY_09559"; transcript_id "RvY_09559.1"; Scaffold004 rebuild exon 3771736 3772033 . - . gene_id "RvY_09559"; transcript_id "RvY_09559.1"; Scaffold004 rebuild exon 3772128 3772264 . - . gene_id "RvY_09559"; transcript_id "RvY_09559.1"; Scaffold004 rebuild transcript 3772917 3774197 . + . gene_id "RvY_09560"; transcript_id "RvY_09560.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3772917 3773034 . + . gene_id "RvY_09560"; transcript_id "RvY_09560.1"; Scaffold004 rebuild exon 3773102 3773189 . + . gene_id "RvY_09560"; transcript_id "RvY_09560.1"; Scaffold004 rebuild exon 3773201 3773704 . + . gene_id "RvY_09560"; transcript_id "RvY_09560.1"; Scaffold004 rebuild exon 3773762 3774197 . + . gene_id "RvY_09560"; transcript_id "RvY_09560.1"; Scaffold004 rebuild transcript 3774227 3774724 . + . gene_id "RvY_09561"; transcript_id "RvY_09561.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3774227 3774724 . + . gene_id "RvY_09561"; transcript_id "RvY_09561.1"; Scaffold004 rebuild transcript 3775419 3776130 . - . gene_id "RvY_09562"; transcript_id "RvY_09562.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3775419 3775801 . - . gene_id "RvY_09562"; transcript_id "RvY_09562.1"; Scaffold004 rebuild exon 3775806 3776130 . - . gene_id "RvY_09562"; transcript_id "RvY_09562.1"; Scaffold004 rebuild transcript 3776459 3777190 . - . gene_id "RvY_09563"; transcript_id "RvY_09563.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3776459 3776676 . - . gene_id "RvY_09563"; transcript_id "RvY_09563.1"; Scaffold004 rebuild exon 3777106 3777190 . - . gene_id "RvY_09563"; transcript_id "RvY_09563.1"; Scaffold004 rebuild transcript 3778555 3780895 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; gene_name "eEF-1G"; annotation "Probable elongation factor 1-gamma"; KO "K03233"; similar_genes "EF1G_CAEEL(e-value:4.8e-70;bit-score:262.0)"; Scaffold004 rebuild exon 3778555 3778707 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3778776 3778900 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3778967 3779139 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3779223 3779587 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3779693 3779836 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3779917 3780056 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3780120 3780186 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3780600 3780758 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild exon 3780881 3780895 . - . gene_id "RvY_09564"; transcript_id "RvY_09564.1"; Scaffold004 rebuild transcript 3781988 3783165 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; gene_name "RpsD"; annotation "hypothetical protein."; CDD "Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]"; KO "K14560"; similar_genes "IMP3_YEAST(e-value:5.8e-24;bit-score:109.0)"; Scaffold004 rebuild exon 3781988 3782124 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild exon 3782223 3782330 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild exon 3782465 3782539 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild exon 3782624 3782703 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild exon 3782799 3782850 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild exon 3782915 3782987 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild exon 3783142 3783165 . + . gene_id "RvY_09565"; transcript_id "RvY_09565.1"; Scaffold004 rebuild transcript 3783708 3786310 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; gene_name "CCNE"; annotation "cyclin E"; KO "K06626"; similar_genes "CCNE1_DANRE(e-value:3.1e-12;bit-score:70.0)"; Scaffold004 rebuild exon 3783708 3783968 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3784259 3784425 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3784521 3784635 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3784717 3784884 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3784964 3785059 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3785211 3785357 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3785426 3785636 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3785708 3786153 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild exon 3786272 3786310 . - . gene_id "RvY_09566"; transcript_id "RvY_09566.1"; Scaffold004 rebuild transcript 3786978 3788689 . + . gene_id "RvY_09567"; transcript_id "RvY_09567.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3786978 3787041 . + . gene_id "RvY_09567"; transcript_id "RvY_09567.1"; Scaffold004 rebuild exon 3788598 3788689 . + . gene_id "RvY_09567"; transcript_id "RvY_09567.1"; Scaffold004 rebuild transcript 3789562 3794445 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3789562 3789607 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3790839 3790976 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3791062 3791334 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3791404 3791491 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3791566 3791693 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3791823 3792719 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3792807 3793274 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3793465 3793752 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3793833 3793957 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3794023 3794142 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild exon 3794212 3794445 . + . gene_id "RvY_09568"; transcript_id "RvY_09568.1"; Scaffold004 rebuild transcript 3794936 3798050 . + . gene_id "RvY_09569"; transcript_id "RvY_09569.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3794936 3795130 . + . gene_id "RvY_09569"; transcript_id "RvY_09569.1"; Scaffold004 rebuild exon 3797298 3797663 . + . gene_id "RvY_09569"; transcript_id "RvY_09569.1"; Scaffold004 rebuild exon 3797838 3798050 . + . gene_id "RvY_09569"; transcript_id "RvY_09569.1"; Scaffold004 rebuild transcript 3798361 3798705 . - . gene_id "RvY_09570"; transcript_id "RvY_09570.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3798361 3798705 . - . gene_id "RvY_09570"; transcript_id "RvY_09570.1"; Scaffold004 rebuild transcript 3799048 3802029 . - . gene_id "RvY_09571"; transcript_id "RvY_09571.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3799048 3799394 . - . gene_id "RvY_09571"; transcript_id "RvY_09571.1"; Scaffold004 rebuild exon 3799694 3800063 . - . gene_id "RvY_09571"; transcript_id "RvY_09571.1"; Scaffold004 rebuild exon 3800231 3800904 . - . gene_id "RvY_09571"; transcript_id "RvY_09571.1"; Scaffold004 rebuild exon 3801087 3802029 . - . gene_id "RvY_09571"; transcript_id "RvY_09571.1"; Scaffold004 rebuild transcript 3803055 3806448 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; gene_name "GARS"; annotation "Glycyl-tRNA synthetase"; CDD "glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam HMM tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases."; EC "EC6.1.1.14"; KO "K01880"; similar_genes "SYG_MOUSE(e-value:3.2e-103;bit-score:372.0)"; Scaffold004 rebuild exon 3803055 3803288 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3803402 3803503 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3803574 3803679 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3803761 3803902 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3803985 3804150 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3804257 3804402 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3804519 3804668 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3804749 3804911 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3804980 3805144 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3805229 3805482 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3805547 3805632 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3805707 3805816 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3805882 3805975 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3806052 3806242 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild exon 3806332 3806448 . + . gene_id "RvY_09572"; transcript_id "RvY_09572.1"; Scaffold004 rebuild transcript 3807663 3810372 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3807663 3808189 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3808302 3808568 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3808660 3808960 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3809048 3809249 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3809321 3809460 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3809542 3809727 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3809797 3809929 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3810010 3810137 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3810206 3810274 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild exon 3810349 3810372 . - . gene_id "RvY_09573"; transcript_id "RvY_09573.1"; Scaffold004 rebuild transcript 3809476 3810265 . + . gene_id "RvY_09574"; transcript_id "RvY_09574.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3809476 3809746 . + . gene_id "RvY_09574"; transcript_id "RvY_09574.1"; Scaffold004 rebuild exon 3810144 3810265 . + . gene_id "RvY_09574"; transcript_id "RvY_09574.1"; Scaffold004 rebuild transcript 3810833 3811593 . + . gene_id "RvY_09575"; transcript_id "RvY_09575.1"; gene_name "NOLA2"; annotation "putative H/ACA ribonucleoprotein complex subunit 2-like protein"; KO "K11129"; similar_genes "NHP2_DROYA(e-value:4.8e-34;bit-score:142.0)"; Scaffold004 rebuild exon 3810833 3810992 . + . gene_id "RvY_09575"; transcript_id "RvY_09575.1"; Scaffold004 rebuild exon 3811084 3811156 . + . gene_id "RvY_09575"; transcript_id "RvY_09575.1"; Scaffold004 rebuild exon 3811234 3811339 . + . gene_id "RvY_09575"; transcript_id "RvY_09575.1"; Scaffold004 rebuild exon 3811468 3811593 . + . gene_id "RvY_09575"; transcript_id "RvY_09575.1"; Scaffold004 rebuild transcript 3812980 3813300 . + . gene_id "RvY_09576"; transcript_id "RvY_09576.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3812980 3813300 . + . gene_id "RvY_09576"; transcript_id "RvY_09576.1"; Scaffold004 rebuild transcript 3818704 3828578 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; gene_name "(1,2,3)GLRA3(4)LIC"; annotation "putative Gamma-aminobutyric acid receptor subunit beta"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(1,2,3)K05195"; similar_genes "GBRB_MUSDO(e-value:9.2e-48;bit-score:188.0)"; Scaffold004 rebuild exon 3818704 3818825 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3822428 3822744 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3825015 3825082 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3826303 3826489 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3826795 3826837 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3826919 3827001 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3827079 3827228 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3827311 3827430 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3827629 3828077 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3828188 3828405 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild exon 3828473 3828578 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.1"; Scaffold004 rebuild transcript 3818704 3828409 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; gene_name "(1,2,3)GLRA3(4)LIC"; annotation "putative Gamma-aminobutyric acid receptor subunit beta"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(1,2,3)K05195"; similar_genes "GBRB_MUSDO(e-value:9.2e-48;bit-score:188.0)"; Scaffold004 rebuild exon 3818704 3818825 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3822428 3822744 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3825015 3825082 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3826303 3826489 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3826795 3826837 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3826919 3827001 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3827079 3827228 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3827311 3827430 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3827629 3828077 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild exon 3828188 3828409 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.2"; Scaffold004 rebuild transcript 3822450 3828409 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; gene_name "(1,2,3)GLRA3(4)LIC"; annotation "putative Gamma-aminobutyric acid receptor subunit beta"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(1,2,3)K05195"; similar_genes "GBRB_MUSDO(e-value:9.2e-48;bit-score:188.0)"; Scaffold004 rebuild exon 3822450 3822744 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3825015 3825082 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3826303 3826489 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3826795 3826837 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3826919 3827001 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3827079 3827228 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3827311 3827430 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3827629 3828077 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild exon 3828188 3828409 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.3"; Scaffold004 rebuild transcript 3825041 3828303 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; gene_name "(1,2,3)GLRA3(4)LIC"; annotation "putative Gamma-aminobutyric acid receptor subunit beta"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(1,2,3)K05195"; similar_genes "GBRB_MUSDO(e-value:9.2e-48;bit-score:188.0)"; Scaffold004 rebuild exon 3825041 3825082 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3826303 3826489 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3826795 3826837 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3826919 3827001 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3827079 3827228 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3827311 3827430 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3827629 3828077 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild exon 3828187 3828303 . + . gene_id "RvY_09577"; transcript_id "RvY_09577.4"; Scaffold004 rebuild transcript 3829433 3830206 . - . gene_id "RvY_09578"; transcript_id "RvY_09578.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3829433 3830206 . - . gene_id "RvY_09578"; transcript_id "RvY_09578.1"; Scaffold004 rebuild transcript 3830890 3834481 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; gene_name "K00670"; annotation "NMDA receptor-regulated protein 1"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[NARP1] NMDA receptor-regulated protein 1|[TPR_8] Tetratricopeptide repeat"; EC "EC2.3.1.88"; KO "K00670"; similar_genes "NARG1_PONAB(e-value:3.1e-63;bit-score:239.0)"; Scaffold004 rebuild exon 3830890 3831008 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3831111 3831209 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3831289 3831397 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3831467 3831721 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3831861 3832010 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3832083 3832211 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3832280 3832432 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3832540 3832706 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3832766 3832844 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3832925 3833031 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3833096 3833191 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3833265 3833378 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3833451 3833811 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3833907 3833995 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3834074 3834178 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3834268 3834352 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild exon 3834410 3834481 . - . gene_id "RvY_09579"; transcript_id "RvY_09579.1"; Scaffold004 rebuild transcript 3835143 3837460 . + . gene_id "RvY_09580"; transcript_id "RvY_09580.1"; annotation "hypothetical protein."; Pfam "[PGAP1] PGAP1-like protein"; similar_genes "SRAC1_HUMAN(e-value:4.4e-07;bit-score:53.0)"; Scaffold004 rebuild exon 3835143 3835636 . + . gene_id "RvY_09580"; transcript_id "RvY_09580.1"; Scaffold004 rebuild exon 3835827 3836272 . + . gene_id "RvY_09580"; transcript_id "RvY_09580.1"; Scaffold004 rebuild exon 3836334 3836952 . + . gene_id "RvY_09580"; transcript_id "RvY_09580.1"; Scaffold004 rebuild exon 3837112 3837460 . + . gene_id "RvY_09580"; transcript_id "RvY_09580.1"; Scaffold004 rebuild transcript 3837694 3843361 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; gene_name "CID"; annotation "hypothetical protein."; CDD "CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices."; KO "K14400"; Scaffold004 rebuild exon 3837694 3838044 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3838303 3838416 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3838533 3838699 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3838772 3838977 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3839209 3839599 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3839792 3840738 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3840909 3841333 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3841810 3841995 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3842073 3842264 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3842331 3842459 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild exon 3843158 3843361 . - . gene_id "RvY_09581"; transcript_id "RvY_09581.1"; Scaffold004 rebuild transcript 3844290 3848565 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; gene_name "PHKA_B"; annotation "Phosphorylase b kinase regulatory subunit beta"; Pfam "[Glyco_hydro_15] Glycosyl hydrolases family 15"; KO "K07190"; similar_genes "KPBB_HUMAN(e-value:2.1e-68;bit-score:256.0)"; Scaffold004 rebuild exon 3844290 3845225 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3845335 3846138 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3846324 3846890 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3846990 3847141 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3847210 3847315 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3847396 3847555 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3847618 3847679 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3847748 3848223 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild exon 3848313 3848565 . - . gene_id "RvY_09582"; transcript_id "RvY_09582.1"; Scaffold004 rebuild transcript 3848632 3849003 . - . gene_id "RvY_09583"; transcript_id "RvY_09583.1"; gene_name "LSm9"; annotation "hypothetical protein."; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; Scaffold004 rebuild exon 3848632 3849003 . - . gene_id "RvY_09583"; transcript_id "RvY_09583.1"; Scaffold004 rebuild transcript 3848690 3849166 . + . gene_id "RvY_09584"; transcript_id "RvY_09584.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3848690 3849166 . + . gene_id "RvY_09584"; transcript_id "RvY_09584.1"; Scaffold004 rebuild transcript 3850681 3850866 . - . gene_id "RvY_09585"; transcript_id "RvY_09585.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3850681 3850866 . - . gene_id "RvY_09585"; transcript_id "RvY_09585.1"; Scaffold004 rebuild transcript 3852554 3855902 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; gene_name "PBP1_iGluR_AMPA"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current."; Scaffold004 rebuild exon 3852554 3852638 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3853874 3854029 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3854263 3854544 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3854625 3854827 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3854909 3854950 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3855016 3855177 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3855231 3855376 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3855442 3855496 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3855558 3855662 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild exon 3855753 3855902 . + . gene_id "RvY_09586"; transcript_id "RvY_09586.1"; Scaffold004 rebuild transcript 3857986 3858369 . + . gene_id "RvY_09587"; transcript_id "RvY_09587.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3857986 3858045 . + . gene_id "RvY_09587"; transcript_id "RvY_09587.1"; Scaffold004 rebuild exon 3858143 3858217 . + . gene_id "RvY_09587"; transcript_id "RvY_09587.1"; Scaffold004 rebuild exon 3858286 3858369 . + . gene_id "RvY_09587"; transcript_id "RvY_09587.1"; Scaffold004 rebuild transcript 3858874 3859617 . - . gene_id "RvY_09588"; transcript_id "RvY_09588.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3858874 3859101 . - . gene_id "RvY_09588"; transcript_id "RvY_09588.1"; Scaffold004 rebuild exon 3859159 3859349 . - . gene_id "RvY_09588"; transcript_id "RvY_09588.1"; Scaffold004 rebuild exon 3859406 3859466 . - . gene_id "RvY_09588"; transcript_id "RvY_09588.1"; Scaffold004 rebuild exon 3859549 3859617 . - . gene_id "RvY_09588"; transcript_id "RvY_09588.1"; Scaffold004 rebuild transcript 3860059 3862385 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; gene_name "(1)pepP(2,3)PepP"; annotation "(1)X-Pro aminopeptidase [EC:3.4.11.9](2,3)hypothetical protein."; Pfam "[AMP_N] Aminopeptidase P, N-terminal domain|[Peptidase_M24] Metallopeptidase family M24"; CDD "(1)Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.(2,3)Xaa-Pro aminopeptidase [Amino acid transport and metabolism]"; EC "(1)EC3.4.11.9"; KO "(1)K01262"; similar_genes "(1)XPP3_HUMAN(e-value:3.2e-18;bit-score:90.0)"; Scaffold004 rebuild exon 3860059 3860137 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3860231 3860461 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3860543 3860648 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3860744 3861262 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3861470 3861503 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3861574 3861621 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3861693 3861947 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3862004 3862190 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild exon 3862264 3862385 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.1"; Scaffold004 rebuild transcript 3860059 3861512 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.2"; gene_name "(1)pepP(2,3)PepP"; annotation "(1)X-Pro aminopeptidase [EC:3.4.11.9](2,3)hypothetical protein."; Pfam "[AMP_N] Aminopeptidase P, N-terminal domain|[Peptidase_M24] Metallopeptidase family M24"; CDD "(1)Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.(2,3)Xaa-Pro aminopeptidase [Amino acid transport and metabolism]"; EC "(1)EC3.4.11.9"; KO "(1)K01262"; similar_genes "(1)XPP3_HUMAN(e-value:3.2e-18;bit-score:90.0)"; Scaffold004 rebuild exon 3860059 3860137 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.2"; Scaffold004 rebuild exon 3860231 3860461 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.2"; Scaffold004 rebuild exon 3860543 3860648 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.2"; Scaffold004 rebuild exon 3860744 3861262 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.2"; Scaffold004 rebuild exon 3861470 3861512 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.2"; Scaffold004 rebuild transcript 3860059 3861502 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.3"; gene_name "(1)pepP(2,3)PepP"; annotation "(1)X-Pro aminopeptidase [EC:3.4.11.9](2,3)hypothetical protein."; Pfam "[AMP_N] Aminopeptidase P, N-terminal domain|[Peptidase_M24] Metallopeptidase family M24"; CDD "(1)Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.(2,3)Xaa-Pro aminopeptidase [Amino acid transport and metabolism]"; EC "(1)EC3.4.11.9"; KO "(1)K01262"; similar_genes "(1)XPP3_HUMAN(e-value:3.2e-18;bit-score:90.0)"; Scaffold004 rebuild exon 3860059 3860137 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.3"; Scaffold004 rebuild exon 3860231 3860461 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.3"; Scaffold004 rebuild exon 3860543 3860648 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.3"; Scaffold004 rebuild exon 3860744 3861262 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.3"; Scaffold004 rebuild exon 3861475 3861502 . + . gene_id "RvY_09589"; transcript_id "RvY_09589.3"; Scaffold004 rebuild transcript 3864358 3876358 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; gene_name "LMO7"; annotation "F-box protein 20"; Pfam "[LIM]"; KO "K06084"; Scaffold004 rebuild exon 3864358 3864380 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3864448 3864609 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3864680 3865114 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3865173 3865727 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3865839 3866919 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3867012 3867417 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3867641 3868026 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3868101 3868213 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3868451 3868628 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3868708 3868815 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3869150 3869647 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3870038 3870080 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3870909 3871009 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3872699 3872780 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3873253 3873323 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild exon 3876257 3876358 . - . gene_id "RvY_09590"; transcript_id "RvY_09590.1"; Scaffold004 rebuild transcript 3877839 3883389 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; annotation "putative Oxysterol-binding protein-related protein 11"; Pfam "[PH]|[Oxysterol_BP] Oxysterol-binding protein"; similar_genes "OSB11_MOUSE(e-value:7.9e-47;bit-score:185.0)"; Scaffold004 rebuild exon 3877839 3877892 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3878107 3878337 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3878419 3878538 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3878648 3878919 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3879224 3879365 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3879440 3879607 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3879960 3880162 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3880240 3880861 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3881525 3881841 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3881899 3882031 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3883043 3883093 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3883164 3883215 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild exon 3883295 3883389 . - . gene_id "RvY_09591"; transcript_id "RvY_09591.1"; Scaffold004 rebuild transcript 3884273 3892485 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; gene_name "LMX1"; annotation "LIM homeobox transcription factor 1"; Pfam "[LIM]|[Homeobox]"; KO "K09371"; similar_genes "LMX1A_MESAU(e-value:4.4e-24;bit-score:109.0)"; Scaffold004 rebuild exon 3884273 3884565 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild exon 3884623 3884866 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild exon 3884945 3885135 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild exon 3885235 3885482 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild exon 3888258 3888373 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild exon 3892075 3892246 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild exon 3892370 3892485 . - . gene_id "RvY_09592"; transcript_id "RvY_09592.1"; Scaffold004 rebuild transcript 3890463 3892891 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; gene_name "(1)CNGA1(2)CNGA2"; annotation "Cyclic nucleotide-gated channel cone photoreceptor subunit alpha"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1)Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.(2)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K04948(2)K04949"; similar_genes "(1)CNG1_CHICK(e-value:1.4e-103;bit-score:373.0)(2)CNG1_CHICK(e-value:4.2e-120;bit-score:428.0)"; Scaffold004 rebuild exon 3890463 3890609 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3890675 3890788 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3890947 3891077 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3891151 3891365 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3891434 3891841 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3891906 3892238 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3892296 3892543 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild exon 3892622 3892891 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.1"; Scaffold004 rebuild transcript 3891329 3893323 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; gene_name "(1)CNGA1(2)CNGA2"; annotation "Cyclic nucleotide-gated channel cone photoreceptor subunit alpha"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Ion_trans] Ion transport protein"; CDD "(1)Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.(2)effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "(1)K04948(2)K04949"; similar_genes "(1)CNG1_CHICK(e-value:1.4e-103;bit-score:373.0)(2)CNG1_CHICK(e-value:4.2e-120;bit-score:428.0)"; Scaffold004 rebuild exon 3891329 3891365 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; Scaffold004 rebuild exon 3891434 3891841 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; Scaffold004 rebuild exon 3891906 3892238 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; Scaffold004 rebuild exon 3892296 3892543 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; Scaffold004 rebuild exon 3892622 3892861 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; Scaffold004 rebuild exon 3892919 3893323 . + . gene_id "RvY_09593"; transcript_id "RvY_09593.2"; Scaffold004 rebuild transcript 3892905 3893523 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3892905 3893149 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.1"; Scaffold004 rebuild exon 3893367 3893523 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.1"; Scaffold004 rebuild transcript 3893006 3893609 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3893006 3893149 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.2"; Scaffold004 rebuild exon 3893367 3893609 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.2"; Scaffold004 rebuild transcript 3892888 3893446 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3892888 3893149 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.3"; Scaffold004 rebuild exon 3893367 3893446 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.3"; Scaffold004 rebuild transcript 3893310 3893609 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.4"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3893310 3893609 . - . gene_id "RvY_09594"; transcript_id "RvY_09594.4"; Scaffold004 rebuild transcript 3893966 3896595 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3893966 3894479 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; Scaffold004 rebuild exon 3894597 3894731 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; Scaffold004 rebuild exon 3894819 3894975 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; Scaffold004 rebuild exon 3895050 3895671 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; Scaffold004 rebuild exon 3895808 3896453 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; Scaffold004 rebuild exon 3896534 3896595 . + . gene_id "RvY_09595"; transcript_id "RvY_09595.1"; Scaffold004 rebuild transcript 3897170 3899757 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3897170 3897571 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3897764 3898012 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3898097 3898289 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3898363 3898557 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3898654 3898800 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3898867 3899016 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3899105 3899264 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3899355 3899599 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild exon 3899687 3899757 . - . gene_id "RvY_09596"; transcript_id "RvY_09596.1"; Scaffold004 rebuild transcript 3901926 3903302 . - . gene_id "RvY_09597"; transcript_id "RvY_09597.1"; gene_name "DNAJB4"; annotation "putative DnaJ homolog subfamily B member 4"; Pfam "[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; KO "K09510"; similar_genes "DNJB4_PONAB(e-value:1.6e-47;bit-score:187.0)"; Scaffold004 rebuild exon 3901926 3902165 . - . gene_id "RvY_09597"; transcript_id "RvY_09597.1"; Scaffold004 rebuild exon 3902258 3902673 . - . gene_id "RvY_09597"; transcript_id "RvY_09597.1"; Scaffold004 rebuild exon 3902915 3903302 . - . gene_id "RvY_09597"; transcript_id "RvY_09597.1"; Scaffold004 rebuild transcript 3906261 3906700 . - . gene_id "RvY_09598"; transcript_id "RvY_09598.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3906261 3906428 . - . gene_id "RvY_09598"; transcript_id "RvY_09598.1"; Scaffold004 rebuild exon 3906602 3906700 . - . gene_id "RvY_09598"; transcript_id "RvY_09598.1"; Scaffold004 rebuild transcript 3908607 3911844 . + . gene_id "RvY_09599"; transcript_id "RvY_09599.1"; gene_name "CDX"; annotation "homeobox protein CDX"; Pfam "[Homeobox]"; KO "K09312"; similar_genes "CDX1_XENTR(e-value:4.4e-22;bit-score:102.0)"; Scaffold004 rebuild exon 3908607 3909318 . + . gene_id "RvY_09599"; transcript_id "RvY_09599.1"; Scaffold004 rebuild exon 3911214 3911382 . + . gene_id "RvY_09599"; transcript_id "RvY_09599.1"; Scaffold004 rebuild exon 3911604 3911844 . + . gene_id "RvY_09599"; transcript_id "RvY_09599.1"; Scaffold004 rebuild transcript 3912175 3914112 . - . gene_id "RvY_09600"; transcript_id "RvY_09600.1"; gene_name "DAK1"; annotation "dihydroxyacetone kinase [EC:2.7.1.29]"; Pfam "[Dak1]|[Dak2] DAK2 domain"; CDD "dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PMID:11985845)."; EC "EC2.7.1.29"; KO "K00863"; similar_genes "DHAK_CITFR(e-value:1.6e-13;bit-score:74.0)"; Scaffold004 rebuild exon 3912175 3912829 . - . gene_id "RvY_09600"; transcript_id "RvY_09600.1"; Scaffold004 rebuild exon 3912884 3913905 . - . gene_id "RvY_09600"; transcript_id "RvY_09600.1"; Scaffold004 rebuild exon 3913981 3914112 . - . gene_id "RvY_09600"; transcript_id "RvY_09600.1"; Scaffold004 rebuild transcript 3915139 3918642 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; gene_name "SMC_prok_A"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent."; Scaffold004 rebuild exon 3915139 3915332 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3915422 3915530 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3915610 3915957 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3916025 3916289 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3916377 3916882 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3916988 3917511 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3917618 3917867 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3917943 3918526 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild exon 3918609 3918642 . - . gene_id "RvY_09601"; transcript_id "RvY_09601.1"; Scaffold004 rebuild transcript 3919428 3920542 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; gene_name "ALKBH7"; annotation "alkylated DNA repair protein alkB homolog 7"; Pfam "[2OG-FeII_Oxy_2] 2OG-Fe(II) oxygenase superfamily"; CDD "Alkylated DNA repair protein [DNA replication, recombination, and repair]"; KO "K10769"; similar_genes "ALKB7_BOVIN(e-value:9.4e-16;bit-score:81.0)"; Scaffold004 rebuild exon 3919428 3919442 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; Scaffold004 rebuild exon 3919512 3919829 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; Scaffold004 rebuild exon 3919892 3920065 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; Scaffold004 rebuild exon 3920137 3920211 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; Scaffold004 rebuild exon 3920269 3920318 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; Scaffold004 rebuild exon 3920416 3920542 . + . gene_id "RvY_09602"; transcript_id "RvY_09602.1"; Scaffold004 rebuild transcript 3920951 3922945 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; gene_name "PRKCSH"; annotation "putative Glucosidase 2 subunit beta"; Pfam "[PRKCSH] Glucosidase II beta subunit-like protein|[PRKCSH-like] Glucosidase II beta subunit-like|[PRKCSH_1] Glucosidase II beta subunit-like protein"; KO "K08288"; similar_genes "GLU2B_BOVIN(e-value:3.5e-30;bit-score:129.0)"; Scaffold004 rebuild exon 3920951 3921248 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; Scaffold004 rebuild exon 3921315 3922202 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; Scaffold004 rebuild exon 3922322 3922382 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; Scaffold004 rebuild exon 3922459 3922563 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; Scaffold004 rebuild exon 3922661 3922768 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; Scaffold004 rebuild exon 3922840 3922945 . - . gene_id "RvY_09603"; transcript_id "RvY_09603.1"; Scaffold004 rebuild transcript 3923571 3925562 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; gene_name "MhpC"; annotation "putative Protein phosphatase methylesterase 1"; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]"; EC "EC3.1.1.-"; KO "K13617"; similar_genes "PPME1_BOVIN(e-value:1.8e-29;bit-score:127.0)"; Scaffold004 rebuild exon 3923571 3923626 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3923812 3923914 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3923974 3924066 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3924125 3924182 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3924254 3924305 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3924414 3924571 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3924638 3924794 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3924901 3925151 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3925220 3925264 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3925348 3925480 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild exon 3925544 3925562 . + . gene_id "RvY_09604"; transcript_id "RvY_09604.1"; Scaffold004 rebuild transcript 3925673 3928657 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; gene_name "INPP4"; annotation "inositol polyphosphate-4-phosphatase [EC:3.1.3.66]"; EC "EC3.1.3.66"; KO "K01109"; Scaffold004 rebuild exon 3925673 3925805 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3925871 3926120 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3926183 3926268 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3926341 3926475 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3926548 3926813 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3926878 3927090 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3927169 3927243 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3927332 3927642 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3927734 3927862 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3927942 3928023 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3928104 3928185 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3928262 3928547 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild exon 3928630 3928657 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.1"; Scaffold004 rebuild transcript 3925867 3928657 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; gene_name "INPP4"; annotation "inositol polyphosphate-4-phosphatase [EC:3.1.3.66]"; EC "EC3.1.3.66"; KO "K01109"; Scaffold004 rebuild exon 3925867 3926120 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3926183 3926268 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3926341 3926475 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3926548 3926813 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3926878 3927090 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3927169 3927243 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3927332 3927642 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3927734 3927862 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3927942 3928023 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3928104 3928185 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3928262 3928547 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild exon 3928630 3928657 . - . gene_id "RvY_09605"; transcript_id "RvY_09605.2"; Scaffold004 rebuild transcript 3929452 3931140 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; gene_name "K01444"; annotation "putative Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GG24090"; Pfam "[Asparaginase_2] Asparaginase"; CDD "Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme."; EC "EC3.5.1.26"; KO "K01444"; similar_genes "ASPG1_DROER(e-value:6.0e-45;bit-score:178.0)"; Scaffold004 rebuild exon 3929452 3929768 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild exon 3929852 3929964 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild exon 3930084 3930196 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild exon 3930322 3930527 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild exon 3930633 3930740 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild exon 3930819 3930952 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild exon 3931019 3931140 . + . gene_id "RvY_09606"; transcript_id "RvY_09606.1"; Scaffold004 rebuild transcript 3932233 3935206 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; gene_name "TRIM2_3"; annotation "tripartite motif-containing protein 2/3"; Pfam "[NHL] NHL repeat|[SGL] SMP-30/Gluconolaconase/LRE-like region"; KO "K11997"; Scaffold004 rebuild exon 3932233 3932424 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild exon 3932558 3934009 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild exon 3934072 3934443 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild exon 3934501 3934642 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild exon 3934742 3934800 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild exon 3934905 3935016 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild exon 3935100 3935206 . + . gene_id "RvY_09607"; transcript_id "RvY_09607.1"; Scaffold004 rebuild transcript 3937311 3939057 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.1"; gene_name "(2)NMBR"; annotation "(1,3)hypothetical protein.(2)neuromedin B receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(2)K04168"; Scaffold004 rebuild exon 3937311 3937461 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.1"; Scaffold004 rebuild exon 3937537 3937607 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.1"; Scaffold004 rebuild exon 3937718 3937831 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.1"; Scaffold004 rebuild exon 3937977 3938059 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.1"; Scaffold004 rebuild exon 3938373 3939057 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.1"; Scaffold004 rebuild transcript 3937311 3939272 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; gene_name "(2)NMBR"; annotation "(1,3)hypothetical protein.(2)neuromedin B receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(2)K04168"; Scaffold004 rebuild exon 3937311 3937461 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild exon 3937537 3937607 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild exon 3937718 3937831 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild exon 3937977 3938059 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild exon 3938373 3938781 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild exon 3939058 3939092 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild exon 3939146 3939272 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.2"; Scaffold004 rebuild transcript 3937745 3939527 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; gene_name "(2)NMBR"; annotation "(1,3)hypothetical protein.(2)neuromedin B receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(2)K04168"; Scaffold004 rebuild exon 3937745 3937831 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; Scaffold004 rebuild exon 3937977 3938059 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; Scaffold004 rebuild exon 3938373 3938781 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; Scaffold004 rebuild exon 3939058 3939092 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; Scaffold004 rebuild exon 3939146 3939268 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; Scaffold004 rebuild exon 3939422 3939527 . + . gene_id "RvY_09608"; transcript_id "RvY_09608.3"; Scaffold004 rebuild transcript 3941343 3944792 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; gene_name "putA"; annotation "Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial"; Pfam "[Aldedh] Aldehyde dehydrogenase family"; CDD "Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC"; EC "EC1.5.1.12"; KO "K00294"; similar_genes "AL4A1_RAT(e-value:4.9e-106;bit-score:381.0)"; Scaffold004 rebuild exon 3941343 3941577 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3941772 3941963 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3942033 3942163 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3943001 3943271 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3943333 3943520 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3943593 3943667 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3943744 3943893 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3943981 3944136 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3944223 3944270 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3944359 3944617 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild exon 3944710 3944792 . - . gene_id "RvY_09609"; transcript_id "RvY_09609.1"; Scaffold004 rebuild transcript 3945666 3946976 . + . gene_id "RvY_09610"; transcript_id "RvY_09610.1"; gene_name "ZNF830"; annotation "zinc finger protein 830"; Pfam "[DUF4151]"; KO "K13104"; Scaffold004 rebuild exon 3945666 3945760 . + . gene_id "RvY_09610"; transcript_id "RvY_09610.1"; Scaffold004 rebuild exon 3945910 3946012 . + . gene_id "RvY_09610"; transcript_id "RvY_09610.1"; Scaffold004 rebuild exon 3946130 3946278 . + . gene_id "RvY_09610"; transcript_id "RvY_09610.1"; Scaffold004 rebuild exon 3946418 3946976 . + . gene_id "RvY_09610"; transcript_id "RvY_09610.1"; Scaffold004 rebuild transcript 3947203 3948636 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; gene_name "WBP4"; annotation "WW domain-binding protein 4"; Pfam "[WW]|[zf-U1] U1 zinc finger"; KO "K13220"; similar_genes "WBP4_CHICK(e-value:5.3e-12;bit-score:69.0)"; Scaffold004 rebuild exon 3947203 3947431 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild exon 3947568 3947662 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild exon 3947731 3947807 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild exon 3947879 3948179 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild exon 3948272 3948343 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild exon 3948434 3948496 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild exon 3948562 3948636 . - . gene_id "RvY_09611"; transcript_id "RvY_09611.1"; Scaffold004 rebuild transcript 3949532 3952722 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; gene_name "ERCC3"; annotation "TFIIH basal transcription factor complex helicase XPB subunit"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[Helicase_C_3] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[ResIII] Type III restriction enzyme, res subunit"; CDD "DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "K10843"; similar_genes "ERCC3_HUMAN(e-value:7.0e-152;bit-score:534.0)"; Scaffold004 rebuild exon 3949532 3949752 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild exon 3949868 3950247 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild exon 3950312 3950649 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild exon 3950717 3951175 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild exon 3951409 3951825 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild exon 3951929 3952534 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild exon 3952606 3952722 . + . gene_id "RvY_09612"; transcript_id "RvY_09612.1"; Scaffold004 rebuild transcript 3953632 3954589 . - . gene_id "RvY_09613"; transcript_id "RvY_09613.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_11] TPR repeat"; Scaffold004 rebuild exon 3953632 3953868 . - . gene_id "RvY_09613"; transcript_id "RvY_09613.1"; Scaffold004 rebuild exon 3953930 3954112 . - . gene_id "RvY_09613"; transcript_id "RvY_09613.1"; Scaffold004 rebuild exon 3954180 3954418 . - . gene_id "RvY_09613"; transcript_id "RvY_09613.1"; Scaffold004 rebuild exon 3954532 3954589 . - . gene_id "RvY_09613"; transcript_id "RvY_09613.1"; Scaffold004 rebuild transcript 3956415 3957584 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; gene_name "K09008"; annotation "hypothetical protein"; Pfam "[DUF498] Protein of unknown function (DUF498/DUF598)"; CDD "Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available."; KO "K09008"; Scaffold004 rebuild exon 3956415 3956573 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; Scaffold004 rebuild exon 3956664 3956767 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; Scaffold004 rebuild exon 3956862 3956928 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; Scaffold004 rebuild exon 3957020 3957178 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; Scaffold004 rebuild exon 3957275 3957371 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; Scaffold004 rebuild exon 3957526 3957584 . - . gene_id "RvY_09614"; transcript_id "RvY_09614.1"; Scaffold004 rebuild transcript 3958665 3959021 . - . gene_id "RvY_09615"; transcript_id "RvY_09615.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3958665 3959021 . - . gene_id "RvY_09615"; transcript_id "RvY_09615.1"; Scaffold004 rebuild transcript 3959080 3962546 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[Kelch_5] Kelch motif|[BACK] BTB And C-terminal Kelch|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; Scaffold004 rebuild exon 3959080 3959369 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3959425 3959694 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3959795 3960122 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3960201 3960317 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3960396 3960651 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3960717 3960948 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3961017 3961131 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3961214 3961361 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild exon 3962050 3962546 . + . gene_id "RvY_09616"; transcript_id "RvY_09616.1"; Scaffold004 rebuild transcript 3964588 3964773 . + . gene_id "RvY_09617"; transcript_id "RvY_09617.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3964588 3964773 . + . gene_id "RvY_09617"; transcript_id "RvY_09617.1"; Scaffold004 rebuild transcript 3964697 3966222 . - . gene_id "RvY_09618"; transcript_id "RvY_09618.1"; gene_name "(2)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(2)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold004 rebuild exon 3964697 3964810 . - . gene_id "RvY_09618"; transcript_id "RvY_09618.1"; Scaffold004 rebuild exon 3965905 3966222 . - . gene_id "RvY_09618"; transcript_id "RvY_09618.1"; Scaffold004 rebuild transcript 3966138 3966542 . - . gene_id "RvY_09618"; transcript_id "RvY_09618.2"; gene_name "(2)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(2)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold004 rebuild exon 3966138 3966542 . - . gene_id "RvY_09618"; transcript_id "RvY_09618.2"; Scaffold004 rebuild transcript 3969600 3970021 . - . gene_id "RvY_09619"; transcript_id "RvY_09619.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3969600 3969945 . - . gene_id "RvY_09619"; transcript_id "RvY_09619.1"; Scaffold004 rebuild exon 3970005 3970021 . - . gene_id "RvY_09619"; transcript_id "RvY_09619.1"; Scaffold004 rebuild transcript 3970264 3973408 . - . gene_id "RvY_09620"; transcript_id "RvY_09620.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3970264 3971226 . - . gene_id "RvY_09620"; transcript_id "RvY_09620.1"; Scaffold004 rebuild exon 3971378 3971470 . - . gene_id "RvY_09620"; transcript_id "RvY_09620.1"; Scaffold004 rebuild exon 3971555 3971661 . - . gene_id "RvY_09620"; transcript_id "RvY_09620.1"; Scaffold004 rebuild exon 3972925 3973408 . - . gene_id "RvY_09620"; transcript_id "RvY_09620.1"; Scaffold004 rebuild transcript 3974824 3986168 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; product "PIKKc-SMG1 ATM?"; gene_name "SMG1"; annotation "PIKKc-SMG1 ATM? | putative Serine/threonine-protein kinase SMG1"; Pfam "[FATC]|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase"; CDD "Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by genome mutations and by errors during transcription and splicing. SMG-1 phosphorylates Upf1, another central component of NMD, at the C-terminus upon recognition of PTCs. The phosphorylation/dephosphorylation cycle of Upf1 is essential for promoting NMD."; EC "EC2.7.11.1"; KO "K08873"; similar_genes "SMG1_MOUSE(e-value:3.7e-34;bit-score:143.0)"; Scaffold004 rebuild exon 3974824 3974901 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3974979 3975079 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3975146 3975323 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3975394 3975513 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3975587 3975740 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3975856 3975974 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3976052 3976486 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3976596 3976842 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3976900 3977309 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3977446 3977851 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3978019 3978214 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3978282 3978449 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3978506 3978818 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3978893 3978997 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3979117 3979168 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3979233 3979380 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3979468 3980519 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3980593 3981020 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3981163 3981470 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3981602 3981722 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3981802 3982705 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3982916 3983031 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3983097 3983484 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3983627 3983700 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3983757 3983855 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3983935 3984276 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3984502 3985382 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3985446 3985618 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3985900 3985995 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild exon 3986059 3986168 . - . gene_id "RvY_09621"; transcript_id "RvY_09621.1"; Scaffold004 rebuild transcript 3988651 3990504 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[PQQ_2] PQQ-like domain"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "AAMP_CANFA(e-value:1.1e-18;bit-score:91.0)"; Scaffold004 rebuild exon 3988651 3988741 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild exon 3988830 3988982 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild exon 3989064 3989183 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild exon 3989318 3989457 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild exon 3989595 3989736 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild exon 3989808 3989894 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild exon 3989981 3990504 . + . gene_id "RvY_09622"; transcript_id "RvY_09622.1"; Scaffold004 rebuild transcript 3990605 3991686 . - . gene_id "RvY_09623"; transcript_id "RvY_09623.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3990605 3991275 . - . gene_id "RvY_09623"; transcript_id "RvY_09623.1"; Scaffold004 rebuild exon 3991545 3991686 . - . gene_id "RvY_09623"; transcript_id "RvY_09623.1"; Scaffold004 rebuild transcript 3992596 3993781 . + . gene_id "RvY_09624"; transcript_id "RvY_09624.1"; gene_name "PRK09297"; annotation "hypothetical protein."; Pfam "[tRNA_int_endo] tRNA intron endonuclease, catalytic C-terminal domain"; CDD "tRNA-splicing endonuclease subunit alpha; Reviewed"; KO "K15322"; Scaffold004 rebuild exon 3992596 3992826 . + . gene_id "RvY_09624"; transcript_id "RvY_09624.1"; Scaffold004 rebuild exon 3992954 3993284 . + . gene_id "RvY_09624"; transcript_id "RvY_09624.1"; Scaffold004 rebuild exon 3993375 3993589 . + . gene_id "RvY_09624"; transcript_id "RvY_09624.1"; Scaffold004 rebuild exon 3993734 3993781 . + . gene_id "RvY_09624"; transcript_id "RvY_09624.1"; Scaffold004 rebuild transcript 3994484 3995677 . + . gene_id "RvY_09625"; transcript_id "RvY_09625.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 3994484 3994616 . + . gene_id "RvY_09625"; transcript_id "RvY_09625.1"; Scaffold004 rebuild exon 3994740 3994787 . + . gene_id "RvY_09625"; transcript_id "RvY_09625.1"; Scaffold004 rebuild exon 3994898 3995521 . + . gene_id "RvY_09625"; transcript_id "RvY_09625.1"; Scaffold004 rebuild exon 3995601 3995677 . + . gene_id "RvY_09625"; transcript_id "RvY_09625.1"; Scaffold004 rebuild transcript 3996360 3999619 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; gene_name "nop2p"; annotation "Putative ribosomal RNA methyltransferase NOP2"; Pfam "[Nol1_Nop2_Fmu] NOL1/NOP2/sun family"; CDD "NOL1/NOP2/sun family putative RNA methylase."; EC "EC2.1.1.-"; KO "K14835"; similar_genes "NOP2_HUMAN(e-value:1.5e-145;bit-score:513.0)"; Scaffold004 rebuild exon 3996360 3996453 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3996565 3996631 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3996758 3996855 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3996930 3996997 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3997092 3997370 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3997452 3997558 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3997664 3997769 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3997849 3997938 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3998042 3998129 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3998265 3998545 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3998624 3998713 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3998828 3999048 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3999122 3999246 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild exon 3999330 3999619 . + . gene_id "RvY_09626"; transcript_id "RvY_09626.1"; Scaffold004 rebuild transcript 3999894 4001871 . - . gene_id "RvY_09627"; transcript_id "RvY_09627.1"; gene_name "DKC1"; annotation "H/ACA ribonucleoprotein complex subunit 4"; Pfam "[DKCLD] DKCLD (NUC011) domain|[TruB_N] TruB family pseudouridylate synthase (N terminal domain)|[PUA]"; CDD "rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both."; EC "EC5.4.99.-"; KO "K11131"; similar_genes "DKC1_HUMAN(e-value:2.6e-111;bit-score:399.0)"; Scaffold004 rebuild exon 3999894 4000413 . - . gene_id "RvY_09627"; transcript_id "RvY_09627.1"; Scaffold004 rebuild exon 4000524 4000801 . - . gene_id "RvY_09627"; transcript_id "RvY_09627.1"; Scaffold004 rebuild exon 4000870 4001871 . - . gene_id "RvY_09627"; transcript_id "RvY_09627.1"; Scaffold004 rebuild transcript 4000996 4001881 . + . gene_id "RvY_09628"; transcript_id "RvY_09628.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4000996 4001303 . + . gene_id "RvY_09628"; transcript_id "RvY_09628.1"; Scaffold004 rebuild exon 4001755 4001881 . + . gene_id "RvY_09628"; transcript_id "RvY_09628.1"; Scaffold004 rebuild transcript 4000996 4001307 . + . gene_id "RvY_09628"; transcript_id "RvY_09628.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4000996 4001307 . + . gene_id "RvY_09628"; transcript_id "RvY_09628.2"; Scaffold004 rebuild transcript 4001887 4002972 . + . gene_id "RvY_09629"; transcript_id "RvY_09629.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4001887 4001937 . + . gene_id "RvY_09629"; transcript_id "RvY_09629.1"; Scaffold004 rebuild exon 4002034 4002093 . + . gene_id "RvY_09629"; transcript_id "RvY_09629.1"; Scaffold004 rebuild exon 4002205 4002349 . + . gene_id "RvY_09629"; transcript_id "RvY_09629.1"; Scaffold004 rebuild exon 4002423 4002589 . + . gene_id "RvY_09629"; transcript_id "RvY_09629.1"; Scaffold004 rebuild exon 4002781 4002972 . + . gene_id "RvY_09629"; transcript_id "RvY_09629.1"; Scaffold004 rebuild transcript 4003728 4004530 . + . gene_id "RvY_09630"; transcript_id "RvY_09630.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4003728 4003873 . + . gene_id "RvY_09630"; transcript_id "RvY_09630.1"; Scaffold004 rebuild exon 4003927 4003977 . + . gene_id "RvY_09630"; transcript_id "RvY_09630.1"; Scaffold004 rebuild exon 4004035 4004326 . + . gene_id "RvY_09630"; transcript_id "RvY_09630.1"; Scaffold004 rebuild exon 4004402 4004530 . + . gene_id "RvY_09630"; transcript_id "RvY_09630.1"; Scaffold004 rebuild transcript 4005406 4012630 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; gene_name "NFIA"; annotation "putative Nuclear factor 1 A-type"; Pfam "[NfI_DNAbd_pre-N] Nuclear factor I protein pre-N-terminus|[MH1]"; CDD "Domain A in dwarfin family proteins."; KO "K09168"; similar_genes "NFIA_RAT(e-value:2.8e-34;bit-score:143.0)"; Scaffold004 rebuild exon 4005406 4005500 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4005571 4005817 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4005992 4006422 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4006745 4006837 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4006946 4007296 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4007384 4007530 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4007601 4007787 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4007859 4008068 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4008480 4008635 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild exon 4012604 4012630 . - . gene_id "RvY_09631"; transcript_id "RvY_09631.1"; Scaffold004 rebuild transcript 4012850 4013032 . - . gene_id "RvY_09632"; transcript_id "RvY_09632.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4012850 4013032 . - . gene_id "RvY_09632"; transcript_id "RvY_09632.1"; Scaffold004 rebuild transcript 4014074 4015304 . - . gene_id "RvY_09633"; transcript_id "RvY_09633.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4014074 4014377 . - . gene_id "RvY_09633"; transcript_id "RvY_09633.1"; Scaffold004 rebuild exon 4014445 4015026 . - . gene_id "RvY_09633"; transcript_id "RvY_09633.1"; Scaffold004 rebuild exon 4015150 4015304 . - . gene_id "RvY_09633"; transcript_id "RvY_09633.1"; Scaffold004 rebuild transcript 4016984 4021694 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; gene_name "DOT1L"; annotation "histone-lysine N-methyltransferase, H3 lysine-79 specific [EC:2.1.1.43]"; Pfam "[DOT1] Histone methylation protein DOT1"; EC "EC2.1.1.43"; KO "K11427"; Scaffold004 rebuild exon 4016984 4017267 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4017546 4017996 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4018060 4018404 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4018479 4018622 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4018687 4018788 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4018849 4018940 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4018998 4019081 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4019146 4019362 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4019457 4019669 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4019737 4019778 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4019847 4019947 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4020052 4020120 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4020194 4020273 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4020342 4020391 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4020466 4020714 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4020772 4020798 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4020874 4020975 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4021035 4021095 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4021174 4021260 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4021375 4021418 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild exon 4021578 4021694 . - . gene_id "RvY_09634"; transcript_id "RvY_09634.1"; Scaffold004 rebuild transcript 4031365 4031610 . + . gene_id "RvY_09635"; transcript_id "RvY_09635.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4031365 4031610 . + . gene_id "RvY_09635"; transcript_id "RvY_09635.1"; Scaffold004 rebuild transcript 4031828 4038336 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; gene_name "TRPCN"; annotation "Transient receptor potential-gamma protein"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[PKD_channel] Polycystin cation channel|[TRP_2] Transient receptor ion channel II|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ion_trans] Ion transport protein|[Ank_5] Ankyrin repeats (many copies)"; CDD "transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; KO "K05328"; similar_genes "TRPG_DROME(e-value:6.5e-55;bit-score:211.0)"; Scaffold004 rebuild exon 4031828 4032122 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4033196 4033374 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4033797 4033934 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4033996 4034109 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4034396 4034419 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4034483 4034571 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4034727 4034889 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4034961 4035195 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4035287 4035381 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4035594 4035636 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4035720 4035859 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4035929 4036156 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4036229 4036371 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4036444 4036639 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4036739 4036933 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4036996 4037209 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4037285 4037638 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild exon 4037945 4038336 . + . gene_id "RvY_09636"; transcript_id "RvY_09636.1"; Scaffold004 rebuild transcript 4038854 4039030 . - . gene_id "RvY_09637"; transcript_id "RvY_09637.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4038854 4039030 . - . gene_id "RvY_09637"; transcript_id "RvY_09637.1"; Scaffold004 rebuild transcript 4039299 4040459 . + . gene_id "RvY_09638"; transcript_id "RvY_09638.1"; gene_name "K06963"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[THUMP]"; CDD "THUMP domain. The THUMP domain is named after after thiouridine synthases, methylases and PSUSs. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterized RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets."; KO "K06963"; Scaffold004 rebuild exon 4039299 4039393 . + . gene_id "RvY_09638"; transcript_id "RvY_09638.1"; Scaffold004 rebuild exon 4039493 4040459 . + . gene_id "RvY_09638"; transcript_id "RvY_09638.1"; Scaffold004 rebuild transcript 4040727 4043882 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; annotation "hypothetical protein."; Pfam "[RAI16-like] Retinoic acid induced 16-like protein"; Scaffold004 rebuild exon 4040727 4041173 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4041340 4041548 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4041614 4042020 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4042080 4042159 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4042227 4042435 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4042526 4042736 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4042826 4042976 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4043041 4043456 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild exon 4043556 4043882 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.1"; Scaffold004 rebuild transcript 4041232 4043882 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; annotation "hypothetical protein."; Pfam "[RAI16-like] Retinoic acid induced 16-like protein"; Scaffold004 rebuild exon 4041232 4041548 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4041614 4042020 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4042080 4042159 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4042227 4042435 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4042526 4042736 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4042826 4042976 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4043041 4043456 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild exon 4043556 4043882 . - . gene_id "RvY_09639"; transcript_id "RvY_09639.2"; Scaffold004 rebuild transcript 4045860 4048762 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; gene_name "CPSF3L"; annotation "Integrator complex subunit 11"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Beta-Casp]|[Lactamase_B_2] Beta-lactamase superfamily domain|[RMMBL] RNA-metabolising metallo-beta-lactamase"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; EC "EC3.1.27.-"; KO "K13148"; similar_genes "INT11_DANRE(e-value:6.4e-106;bit-score:381.0)"; Scaffold004 rebuild exon 4045860 4045898 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4045988 4046173 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4046261 4046473 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4046581 4046754 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4046837 4046956 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4047044 4047139 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4047211 4047333 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4047406 4047498 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4047574 4047829 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4047922 4047986 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4048131 4048270 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild exon 4048339 4048762 . + . gene_id "RvY_09640"; transcript_id "RvY_09640.1"; Scaffold004 rebuild transcript 4048899 4049939 . - . gene_id "RvY_09641"; transcript_id "RvY_09641.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4048899 4049102 . - . gene_id "RvY_09641"; transcript_id "RvY_09641.1"; Scaffold004 rebuild exon 4049319 4049939 . - . gene_id "RvY_09641"; transcript_id "RvY_09641.1"; Scaffold004 rebuild transcript 4051812 4053842 . + . gene_id "RvY_09642"; transcript_id "RvY_09642.1"; gene_name "SH3RF1"; annotation "E3 ubiquitin-protein ligase SH3RF1 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[SH3_1] SH3 domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; EC "EC6.3.2.19"; KO "K12171"; Scaffold004 rebuild exon 4051812 4051856 . + . gene_id "RvY_09642"; transcript_id "RvY_09642.1"; Scaffold004 rebuild exon 4051923 4052045 . + . gene_id "RvY_09642"; transcript_id "RvY_09642.1"; Scaffold004 rebuild exon 4052171 4052358 . + . gene_id "RvY_09642"; transcript_id "RvY_09642.1"; Scaffold004 rebuild exon 4052618 4053394 . + . gene_id "RvY_09642"; transcript_id "RvY_09642.1"; Scaffold004 rebuild exon 4053560 4053842 . + . gene_id "RvY_09642"; transcript_id "RvY_09642.1"; Scaffold004 rebuild transcript 4058459 4063566 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; gene_name "ELF3_5"; annotation "E74-like factor 3/5"; Pfam "[Ets] Ets-domain"; CDD "erythroblast transformation specific domain. variation of the helix-turn-helix motif"; KO "K09429"; similar_genes "EHF_PANPA(e-value:7.5e-22;bit-score:102.0)"; Scaffold004 rebuild exon 4058459 4058737 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4060690 4061041 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4061308 4061583 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4061692 4061790 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4062090 4062329 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4062411 4062614 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4062690 4062888 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild exon 4063467 4063566 . + . gene_id "RvY_09643"; transcript_id "RvY_09643.1"; Scaffold004 rebuild transcript 4058505 4058726 . - . gene_id "RvY_09644"; transcript_id "RvY_09644.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4058505 4058726 . - . gene_id "RvY_09644"; transcript_id "RvY_09644.1"; Scaffold004 rebuild transcript 4064726 4065906 . + . gene_id "RvY_09645"; transcript_id "RvY_09645.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold004 rebuild exon 4064726 4064797 . + . gene_id "RvY_09645"; transcript_id "RvY_09645.1"; Scaffold004 rebuild exon 4064879 4065079 . + . gene_id "RvY_09645"; transcript_id "RvY_09645.1"; Scaffold004 rebuild exon 4065255 4065437 . + . gene_id "RvY_09645"; transcript_id "RvY_09645.1"; Scaffold004 rebuild exon 4065527 4065709 . + . gene_id "RvY_09645"; transcript_id "RvY_09645.1"; Scaffold004 rebuild exon 4065820 4065906 . + . gene_id "RvY_09645"; transcript_id "RvY_09645.1"; Scaffold004 rebuild transcript 4066537 4067975 . - . gene_id "RvY_09646"; transcript_id "RvY_09646.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold004 rebuild exon 4066537 4066725 . - . gene_id "RvY_09646"; transcript_id "RvY_09646.1"; Scaffold004 rebuild exon 4066815 4067074 . - . gene_id "RvY_09646"; transcript_id "RvY_09646.1"; Scaffold004 rebuild exon 4067148 4067259 . - . gene_id "RvY_09646"; transcript_id "RvY_09646.1"; Scaffold004 rebuild exon 4067402 4067476 . - . gene_id "RvY_09646"; transcript_id "RvY_09646.1"; Scaffold004 rebuild exon 4067724 4067975 . - . gene_id "RvY_09646"; transcript_id "RvY_09646.1"; Scaffold004 rebuild transcript 4067809 4067988 . + . gene_id "RvY_09647"; transcript_id "RvY_09647.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4067809 4067988 . + . gene_id "RvY_09647"; transcript_id "RvY_09647.1"; Scaffold004 rebuild transcript 4070400 4073036 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; gene_name "ALKBH8"; annotation "alkylated DNA repair protein alkB homolog 8"; Pfam "[2OG-FeII_Oxy_2] 2OG-Fe(II) oxygenase superfamily|[Methyltransf_31] Methyltransferase domain|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; KO "K10770"; similar_genes "ALKB8_MOUSE(e-value:2.0e-24;bit-score:110.0)"; Scaffold004 rebuild exon 4070400 4070828 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4070929 4071078 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4071161 4071319 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4071417 4071657 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4071743 4071917 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4071998 4072192 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4072280 4072453 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4072513 4072783 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild exon 4072905 4073036 . - . gene_id "RvY_09648"; transcript_id "RvY_09648.1"; Scaffold004 rebuild transcript 4074932 4078617 . + . gene_id "RvY_09649"; transcript_id "RvY_09649.1"; gene_name "AP3B"; annotation "AP-3 complex subunit beta-1"; Pfam "[Adaptin_N] Adaptin N terminal region|[HEAT_2] HEAT repeats|[Cnd1] non-SMC mitotic condensation complex subunit 1"; KO "K12397"; similar_genes "AP3B1_HUMAN(e-value:6.7e-95;bit-score:344.0)"; Scaffold004 rebuild exon 4074932 4075882 . + . gene_id "RvY_09649"; transcript_id "RvY_09649.1"; Scaffold004 rebuild exon 4075944 4076459 . + . gene_id "RvY_09649"; transcript_id "RvY_09649.1"; Scaffold004 rebuild exon 4076675 4077119 . + . gene_id "RvY_09649"; transcript_id "RvY_09649.1"; Scaffold004 rebuild exon 4077176 4078617 . + . gene_id "RvY_09649"; transcript_id "RvY_09649.1"; Scaffold004 rebuild transcript 4078831 4079548 . - . gene_id "RvY_09650"; transcript_id "RvY_09650.1"; gene_name "SEC22"; annotation "Vesicle-trafficking protein SEC22b-B"; Pfam "[Longin] Regulated-SNARE-like domain|[Synaptobrevin]"; CDD "Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]"; KO "K08517"; similar_genes "S22BB_DANRE(e-value:4.7e-66;bit-score:249.0)"; Scaffold004 rebuild exon 4078831 4079132 . - . gene_id "RvY_09650"; transcript_id "RvY_09650.1"; Scaffold004 rebuild exon 4079203 4079548 . - . gene_id "RvY_09650"; transcript_id "RvY_09650.1"; Scaffold004 rebuild transcript 4080446 4081264 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4080446 4080485 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.1"; Scaffold004 rebuild exon 4080605 4080709 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.1"; Scaffold004 rebuild exon 4080777 4081264 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.1"; Scaffold004 rebuild transcript 4081062 4081469 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4081062 4081469 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.2"; Scaffold004 rebuild transcript 4080084 4080673 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4080084 4080226 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.3"; Scaffold004 rebuild exon 4080293 4080485 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.3"; Scaffold004 rebuild exon 4080605 4080673 . + . gene_id "RvY_09651"; transcript_id "RvY_09651.3"; Scaffold004 rebuild transcript 4081472 4082689 . - . gene_id "RvY_09652"; transcript_id "RvY_09652.1"; annotation "putative Ribosome production factor 1"; Pfam "[Brix]"; KO "K14846"; similar_genes "RPF1_PONAB(e-value:6.7e-42;bit-score:168.0)"; Scaffold004 rebuild exon 4081472 4081640 . - . gene_id "RvY_09652"; transcript_id "RvY_09652.1"; Scaffold004 rebuild exon 4081719 4081897 . - . gene_id "RvY_09652"; transcript_id "RvY_09652.1"; Scaffold004 rebuild exon 4081969 4082205 . - . gene_id "RvY_09652"; transcript_id "RvY_09652.1"; Scaffold004 rebuild exon 4082293 4082547 . - . gene_id "RvY_09652"; transcript_id "RvY_09652.1"; Scaffold004 rebuild exon 4082678 4082689 . - . gene_id "RvY_09652"; transcript_id "RvY_09652.1"; Scaffold004 rebuild transcript 4085858 4093458 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; gene_name "RAPGEF4"; annotation "Rap guanine nucleotide exchange factor 4"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[RasGEF_N] RasGEF N-terminal motif|[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; KO "K04351"; similar_genes "RPGF4_HUMAN(e-value:4.2e-52;bit-score:202.0)"; Scaffold004 rebuild exon 4085858 4085967 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4087534 4087562 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4087623 4087736 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4087864 4087940 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4088011 4088145 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4088221 4088281 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4088619 4088731 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4088992 4089018 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4089097 4089144 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4089260 4089476 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4089548 4089862 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4090206 4090236 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4090366 4090411 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4090517 4090660 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4090724 4090913 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4091124 4091356 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4091578 4091929 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4091993 4092090 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4092164 4092289 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4092356 4092528 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4092601 4092691 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4092758 4092961 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4093036 4093090 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4093157 4093214 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild exon 4093335 4093458 . + . gene_id "RvY_09653"; transcript_id "RvY_09653.1"; Scaffold004 rebuild transcript 4094563 4097065 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; gene_name "ilvA"; annotation "threonine dehydratase [EC:4.3.1.19]"; Pfam "[PALP] Pyridoxal-phosphate dependent enzyme|(1)[ACT]"; CDD "(1)threonine dehydratase; Provisional(2)Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions."; EC "EC4.3.1.19"; KO "K01754"; similar_genes "THD1_HAEIN(e-value:7.2e-16;bit-score:82.0)"; Scaffold004 rebuild exon 4094563 4095090 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4095170 4095240 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4095311 4095356 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4095429 4095614 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4095808 4095945 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4096091 4096324 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4096403 4096542 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4096640 4096858 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild exon 4096924 4097065 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.1"; Scaffold004 rebuild transcript 4094563 4096546 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; gene_name "ilvA"; annotation "threonine dehydratase [EC:4.3.1.19]"; Pfam "[PALP] Pyridoxal-phosphate dependent enzyme|(1)[ACT]"; CDD "(1)threonine dehydratase; Provisional(2)Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions."; EC "EC4.3.1.19"; KO "K01754"; similar_genes "THD1_HAEIN(e-value:7.2e-16;bit-score:82.0)"; Scaffold004 rebuild exon 4094563 4095090 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild exon 4095170 4095240 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild exon 4095311 4095356 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild exon 4095429 4095614 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild exon 4095808 4095945 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild exon 4096091 4096324 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild exon 4096403 4096546 . + . gene_id "RvY_09654"; transcript_id "RvY_09654.2"; Scaffold004 rebuild transcript 4097496 4098882 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; gene_name "Nuc_sug_transp"; annotation "putative UDP-N-acetylglucosamine transporter"; Pfam "[Nuc_sug_transp] Nucleotide-sugar transporter|[UAA] UAA transporter family|[EmrE] Multidrug resistance efflux transporter"; CDD "Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc."; KO "K15272"; similar_genes "S35A3_MOUSE(e-value:6.0e-45;bit-score:178.0)"; Scaffold004 rebuild exon 4097496 4097589 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; Scaffold004 rebuild exon 4097659 4097792 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; Scaffold004 rebuild exon 4097874 4097992 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; Scaffold004 rebuild exon 4098070 4098358 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; Scaffold004 rebuild exon 4098417 4098571 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; Scaffold004 rebuild exon 4098636 4098882 . - . gene_id "RvY_09655"; transcript_id "RvY_09655.1"; Scaffold004 rebuild transcript 4098884 4099057 . + . gene_id "RvY_09656"; transcript_id "RvY_09656.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4098884 4099057 . + . gene_id "RvY_09656"; transcript_id "RvY_09656.1"; Scaffold004 rebuild transcript 4101018 4102939 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_16] Putative methyltransferase"; similar_genes "CP068_MOUSE(e-value:6.8e-10;bit-score:62.0)"; Scaffold004 rebuild exon 4101018 4101192 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4101270 4101458 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4101712 4101752 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4101891 4102038 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4102113 4102385 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4102447 4102552 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4102642 4102828 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild exon 4102907 4102939 . + . gene_id "RvY_09657"; transcript_id "RvY_09657.1"; Scaffold004 rebuild transcript 4103194 4103708 . + . gene_id "RvY_09658"; transcript_id "RvY_09658.1"; gene_name "Robl_LC7"; annotation "hypothetical protein."; Pfam "[Robl_LC7] Roadblock/LC7 domain"; CDD "Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role."; Scaffold004 rebuild exon 4103194 4103196 . + . gene_id "RvY_09658"; transcript_id "RvY_09658.1"; Scaffold004 rebuild exon 4103262 4103337 . + . gene_id "RvY_09658"; transcript_id "RvY_09658.1"; Scaffold004 rebuild exon 4103419 4103708 . + . gene_id "RvY_09658"; transcript_id "RvY_09658.1"; Scaffold004 rebuild transcript 4103837 4106251 . - . gene_id "RvY_09659"; transcript_id "RvY_09659.1"; annotation "hypothetical protein."; Pfam "[DUF719]"; Scaffold004 rebuild exon 4103837 4104219 . - . gene_id "RvY_09659"; transcript_id "RvY_09659.1"; Scaffold004 rebuild exon 4104402 4104843 . - . gene_id "RvY_09659"; transcript_id "RvY_09659.1"; Scaffold004 rebuild exon 4104899 4105147 . - . gene_id "RvY_09659"; transcript_id "RvY_09659.1"; Scaffold004 rebuild exon 4105215 4105983 . - . gene_id "RvY_09659"; transcript_id "RvY_09659.1"; Scaffold004 rebuild exon 4106061 4106251 . - . gene_id "RvY_09659"; transcript_id "RvY_09659.1"; Scaffold004 rebuild transcript 4108080 4111889 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4108080 4108106 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; Scaffold004 rebuild exon 4109216 4109388 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; Scaffold004 rebuild exon 4110354 4110507 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; Scaffold004 rebuild exon 4110590 4111083 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; Scaffold004 rebuild exon 4111472 4111652 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; Scaffold004 rebuild exon 4111815 4111889 . - . gene_id "RvY_09660"; transcript_id "RvY_09660.1"; Scaffold004 rebuild transcript 4113625 4116337 . + . gene_id "RvY_09661"; transcript_id "RvY_09661.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4113625 4113787 . + . gene_id "RvY_09661"; transcript_id "RvY_09661.1"; Scaffold004 rebuild exon 4115820 4116337 . + . gene_id "RvY_09661"; transcript_id "RvY_09661.1"; Scaffold004 rebuild transcript 4116961 4119712 . - . gene_id "RvY_09662"; transcript_id "RvY_09662.1"; annotation "hypothetical protein."; Pfam "[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat"; Scaffold004 rebuild exon 4116961 4117476 . - . gene_id "RvY_09662"; transcript_id "RvY_09662.1"; Scaffold004 rebuild exon 4117570 4117690 . - . gene_id "RvY_09662"; transcript_id "RvY_09662.1"; Scaffold004 rebuild exon 4117912 4118485 . - . gene_id "RvY_09662"; transcript_id "RvY_09662.1"; Scaffold004 rebuild exon 4118686 4118830 . - . gene_id "RvY_09662"; transcript_id "RvY_09662.1"; Scaffold004 rebuild exon 4119221 4119712 . - . gene_id "RvY_09662"; transcript_id "RvY_09662.1"; Scaffold004 rebuild transcript 4121099 4121801 . - . gene_id "RvY_09663"; transcript_id "RvY_09663.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4121099 4121177 . - . gene_id "RvY_09663"; transcript_id "RvY_09663.1"; Scaffold004 rebuild exon 4121281 4121801 . - . gene_id "RvY_09663"; transcript_id "RvY_09663.1"; Scaffold004 rebuild transcript 4120848 4121162 . - . gene_id "RvY_09663"; transcript_id "RvY_09663.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4120848 4121162 . - . gene_id "RvY_09663"; transcript_id "RvY_09663.2"; Scaffold004 rebuild transcript 4122758 4126230 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; gene_name "CLCN3"; annotation "H(+)/Cl(-) exchange transporter 4"; Pfam "[CBS]|[Voltage_CLC] Voltage gated chloride channel"; CDD "ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles."; KO "K05012"; similar_genes "CLCN4_MOUSE(e-value:1.5e-111;bit-score:400.0)"; Scaffold004 rebuild exon 4122758 4122805 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4122864 4122906 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4122970 4123064 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4123156 4123277 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4123355 4123617 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4123681 4123917 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4124003 4124088 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4124152 4124293 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4124358 4124572 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4124649 4124831 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4124902 4124982 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4125057 4125425 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4125498 4125646 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4125722 4125925 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild exon 4126026 4126230 . - . gene_id "RvY_09664"; transcript_id "RvY_09664.1"; Scaffold004 rebuild transcript 4127551 4128915 . + . gene_id "RvY_09665"; transcript_id "RvY_09665.1"; gene_name "PX_SNX5_like"; annotation "Sorting nexin-5"; Pfam "[PX]|[Vps5] Vps5 C terminal like"; CDD "The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p."; similar_genes "SNX5_HUMAN(e-value:2.7e-66;bit-score:249.0)"; Scaffold004 rebuild exon 4127551 4127820 . + . gene_id "RvY_09665"; transcript_id "RvY_09665.1"; Scaffold004 rebuild exon 4127893 4128138 . + . gene_id "RvY_09665"; transcript_id "RvY_09665.1"; Scaffold004 rebuild exon 4128202 4128915 . + . gene_id "RvY_09665"; transcript_id "RvY_09665.1"; Scaffold004 rebuild transcript 4129306 4132373 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; gene_name "COG1078"; annotation "putative SAM domain and HD domain-containing protein 1"; Pfam "[HD]"; CDD "HD superfamily phosphohydrolases [General function prediction only]"; EC "EC3.1.4.-"; similar_genes "SAMH1_DANRE(e-value:2.7e-30;bit-score:130.0)"; Scaffold004 rebuild exon 4129306 4129425 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4129702 4129839 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4129926 4129977 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4130053 4130198 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4130280 4130633 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4130768 4130890 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4130952 4130996 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4131080 4131262 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4131366 4131433 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4131508 4131606 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4131769 4131861 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4131933 4131983 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4132054 4132087 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild exon 4132236 4132373 . - . gene_id "RvY_09666"; transcript_id "RvY_09666.1"; Scaffold004 rebuild transcript 4133139 4134714 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; gene_name "SNUPN"; annotation "snurportin-1"; KO "K13151"; Scaffold004 rebuild exon 4133139 4133323 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; Scaffold004 rebuild exon 4133437 4133719 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; Scaffold004 rebuild exon 4133804 4133995 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; Scaffold004 rebuild exon 4134082 4134159 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; Scaffold004 rebuild exon 4134230 4134362 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; Scaffold004 rebuild exon 4134482 4134714 . + . gene_id "RvY_09667"; transcript_id "RvY_09667.1"; Scaffold004 rebuild transcript 4134916 4135725 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.1"; gene_name "(1)mito_frataxin"; annotation "hypothetical protein."; Pfam "[Frataxin_Cyay] Frataxin-like domain"; CDD "(1)frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately."; similar_genes "(1)FRDA_MOUSE(e-value:1.2e-11;bit-score:68.0)"; Scaffold004 rebuild exon 4134916 4135069 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.1"; Scaffold004 rebuild exon 4135139 4135233 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.1"; Scaffold004 rebuild exon 4135293 4135416 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.1"; Scaffold004 rebuild exon 4135481 4135725 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.1"; Scaffold004 rebuild transcript 4135499 4135942 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.2"; gene_name "(1)mito_frataxin"; annotation "hypothetical protein."; Pfam "[Frataxin_Cyay] Frataxin-like domain"; CDD "(1)frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately."; similar_genes "(1)FRDA_MOUSE(e-value:1.2e-11;bit-score:68.0)"; Scaffold004 rebuild exon 4135499 4135942 . - . gene_id "RvY_09668"; transcript_id "RvY_09668.2"; Scaffold004 rebuild transcript 4135580 4135816 . + . gene_id "RvY_09669"; transcript_id "RvY_09669.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4135580 4135816 . + . gene_id "RvY_09669"; transcript_id "RvY_09669.1"; Scaffold004 rebuild transcript 4139725 4140015 . + . gene_id "RvY_09670"; transcript_id "RvY_09670.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4139725 4140015 . + . gene_id "RvY_09670"; transcript_id "RvY_09670.1"; Scaffold004 rebuild transcript 4140607 4144184 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; annotation "Myotubularin-related protein 7"; Pfam "[Y_phosphatase_m] Myotubularin Y_phosphatase-like|[Myotub-related] Myotubularin-related|[FYVE] FYVE zinc finger"; EC "EC3.1.3.-"; similar_genes "MTMR7_PONAB(e-value:9.7e-56;bit-score:214.0)"; Scaffold004 rebuild exon 4140607 4140678 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4140847 4140990 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4141103 4141265 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4141395 4141552 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4141654 4141825 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4141899 4141990 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4142072 4142204 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4142269 4142399 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4142461 4142583 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4142663 4142982 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4143060 4143194 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4143245 4143371 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4143710 4143940 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild exon 4143999 4144184 . + . gene_id "RvY_09671"; transcript_id "RvY_09671.1"; Scaffold004 rebuild transcript 4144676 4146867 . - . gene_id "RvY_09672"; transcript_id "RvY_09672.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4144676 4144974 . - . gene_id "RvY_09672"; transcript_id "RvY_09672.1"; Scaffold004 rebuild exon 4145186 4145727 . - . gene_id "RvY_09672"; transcript_id "RvY_09672.1"; Scaffold004 rebuild exon 4145869 4146181 . - . gene_id "RvY_09672"; transcript_id "RvY_09672.1"; Scaffold004 rebuild exon 4146269 4146439 . - . gene_id "RvY_09672"; transcript_id "RvY_09672.1"; Scaffold004 rebuild exon 4146519 4146867 . - . gene_id "RvY_09672"; transcript_id "RvY_09672.1"; Scaffold004 rebuild transcript 4148932 4149762 . + . gene_id "RvY_09673"; transcript_id "RvY_09673.1"; annotation "hypothetical protein."; Pfam "[UNC-50] UNC-50 family"; similar_genes "UN50A_XENLA(e-value:5.0e-21;bit-score:99.0)"; Scaffold004 rebuild exon 4148932 4149063 . + . gene_id "RvY_09673"; transcript_id "RvY_09673.1"; Scaffold004 rebuild exon 4149145 4149762 . + . gene_id "RvY_09673"; transcript_id "RvY_09673.1"; Scaffold004 rebuild transcript 4149867 4150969 . - . gene_id "RvY_09674"; transcript_id "RvY_09674.1"; product "Rad51c XRCC2"; gene_name "XRCC2"; annotation "Rad51c XRCC2 | DNA-repair protein XRCC2"; CDD "Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 ."; KO "K10879"; Scaffold004 rebuild exon 4149867 4150432 . - . gene_id "RvY_09674"; transcript_id "RvY_09674.1"; Scaffold004 rebuild exon 4150513 4150858 . - . gene_id "RvY_09674"; transcript_id "RvY_09674.1"; Scaffold004 rebuild exon 4150931 4150969 . - . gene_id "RvY_09674"; transcript_id "RvY_09674.1"; Scaffold004 rebuild transcript 4151406 4152105 . + . gene_id "RvY_09675"; transcript_id "RvY_09675.1"; gene_name "CLNS1A"; annotation "chloride channel, nucleotide-sensitive, 1A"; Pfam "[ICln_channel] Nucleotide-sensitive chloride conductance regulator (ICln)"; KO "K05019"; similar_genes "ICLN_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold004 rebuild exon 4151406 4151524 . + . gene_id "RvY_09675"; transcript_id "RvY_09675.1"; Scaffold004 rebuild exon 4151625 4152105 . + . gene_id "RvY_09675"; transcript_id "RvY_09675.1"; Scaffold004 rebuild transcript 4152347 4154348 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; gene_name "PSMD13"; annotation "26S proteasome regulatory subunit N9"; Pfam "[PCI]"; CDD "PCI/PINT associated module."; KO "K03039"; Scaffold004 rebuild exon 4152347 4152448 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4152528 4152644 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4152725 4152805 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4152889 4152951 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4153023 4153151 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4153223 4153302 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4153362 4153533 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4153605 4153747 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4153818 4153876 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4153935 4153969 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4154033 4154114 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild exon 4154251 4154348 . - . gene_id "RvY_09676"; transcript_id "RvY_09676.1"; Scaffold004 rebuild transcript 4155154 4157926 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold004 rebuild exon 4155154 4155601 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4155682 4155859 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4155968 4156143 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4156215 4156391 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4156471 4156650 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4156747 4157323 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4157383 4157492 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4157572 4157733 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild exon 4157805 4157926 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.1"; Scaffold004 rebuild transcript 4156860 4158923 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold004 rebuild exon 4156860 4157323 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild exon 4157383 4157492 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild exon 4157572 4157733 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild exon 4157805 4157922 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild exon 4157997 4158226 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild exon 4158305 4158407 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild exon 4158851 4158923 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.2"; Scaffold004 rebuild transcript 4155154 4156706 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.3"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; Scaffold004 rebuild exon 4155154 4155601 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.3"; Scaffold004 rebuild exon 4155682 4155859 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.3"; Scaffold004 rebuild exon 4155968 4156143 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.3"; Scaffold004 rebuild exon 4156215 4156391 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.3"; Scaffold004 rebuild exon 4156471 4156706 . + . gene_id "RvY_09677"; transcript_id "RvY_09677.3"; Scaffold004 rebuild transcript 4159303 4166919 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; gene_name "PLXNB"; annotation "plexin B"; Pfam "[PSI] Plexin repeat|[Plexin_cytopl] Plexin cytoplasmic RasGAP domain|[TIG] IPT/TIG domain|[Sema]"; KO "K06821"; similar_genes "PLXB_DROME(e-value:1.0e-23;bit-score:108.0)"; Scaffold004 rebuild exon 4159303 4159422 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4159506 4159580 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4159657 4159948 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4160057 4161058 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4161223 4161559 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4161641 4162049 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4162146 4163117 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4163319 4163537 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4163615 4163746 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4163859 4163987 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4164060 4164192 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4164280 4164376 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4164455 4164608 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4165087 4165261 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4165401 4165501 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4165935 4166246 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4166508 4166696 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild exon 4166800 4166919 . - . gene_id "RvY_09678"; transcript_id "RvY_09678.1"; Scaffold004 rebuild transcript 4166496 4166759 . + . gene_id "RvY_09679"; transcript_id "RvY_09679.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4166496 4166759 . + . gene_id "RvY_09679"; transcript_id "RvY_09679.1"; Scaffold004 rebuild transcript 4167975 4168268 . + . gene_id "RvY_09680"; transcript_id "RvY_09680.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4167975 4167997 . + . gene_id "RvY_09680"; transcript_id "RvY_09680.1"; Scaffold004 rebuild exon 4168082 4168268 . + . gene_id "RvY_09680"; transcript_id "RvY_09680.1"; Scaffold004 rebuild transcript 4169191 4169442 . - . gene_id "RvY_09681"; transcript_id "RvY_09681.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4169191 4169442 . - . gene_id "RvY_09681"; transcript_id "RvY_09681.1"; Scaffold004 rebuild transcript 4176567 4177001 . - . gene_id "RvY_09682"; transcript_id "RvY_09682.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4176567 4176701 . - . gene_id "RvY_09682"; transcript_id "RvY_09682.1"; Scaffold004 rebuild exon 4176777 4177001 . - . gene_id "RvY_09682"; transcript_id "RvY_09682.1"; Scaffold004 rebuild transcript 4177966 4178217 . + . gene_id "RvY_09683"; transcript_id "RvY_09683.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4177966 4178217 . + . gene_id "RvY_09683"; transcript_id "RvY_09683.1"; Scaffold004 rebuild transcript 4179778 4181487 . + . gene_id "RvY_09684"; transcript_id "RvY_09684.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4179778 4179869 . + . gene_id "RvY_09684"; transcript_id "RvY_09684.1"; Scaffold004 rebuild exon 4179956 4180237 . + . gene_id "RvY_09684"; transcript_id "RvY_09684.1"; Scaffold004 rebuild exon 4180313 4180384 . + . gene_id "RvY_09684"; transcript_id "RvY_09684.1"; Scaffold004 rebuild exon 4180551 4180634 . + . gene_id "RvY_09684"; transcript_id "RvY_09684.1"; Scaffold004 rebuild exon 4181331 4181487 . + . gene_id "RvY_09684"; transcript_id "RvY_09684.1"; Scaffold004 rebuild transcript 4181536 4187140 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; gene_name "BAZ1A"; annotation "bromodomain adjacent to zinc finger domain protein 1A"; Pfam "[PHD] PHD-finger"; KO "K11655"; Scaffold004 rebuild exon 4181536 4181728 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4181802 4181956 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4182013 4182108 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4182166 4182307 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4182384 4182503 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4182581 4182655 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4182850 4183053 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4183119 4183287 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4183614 4184081 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4184318 4184609 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4184809 4185298 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4185597 4185807 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4185901 4185943 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4186318 4186853 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild exon 4187071 4187140 . + . gene_id "RvY_09685"; transcript_id "RvY_09685.1"; Scaffold004 rebuild transcript 4187884 4206702 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; gene_name "CA"; annotation "putative Protocadherin Fat 1"; Pfam "[Laminin_G_2] Laminin G domain|[Cadherin_2] Cadherin-like|[Cadherin]|[EGF] EGF-like domain|[Laminin_G_1] Laminin G domain"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "FAT1_HUMAN(e-value:1.8e-29;bit-score:127.0)"; Scaffold004 rebuild exon 4187884 4188212 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4188279 4188662 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4188778 4188804 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4188897 4189022 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4189091 4189816 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4189968 4190535 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4190768 4191219 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4191302 4191839 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4191930 4192466 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4192709 4192852 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4192913 4193100 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4193180 4193743 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4193803 4194517 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4194671 4195380 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4195449 4195676 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4195744 4196169 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4196247 4196426 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4196495 4196890 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4196948 4197106 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4197285 4198237 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4198326 4198818 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4198902 4199405 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4199474 4200064 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4200131 4200341 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4200441 4200761 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4200857 4201233 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4201578 4201778 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4201938 4202573 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4202838 4203971 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4204481 4204981 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4205286 4205591 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4205744 4205803 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4205861 4205975 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4206052 4206425 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild exon 4206615 4206702 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.1"; Scaffold004 rebuild transcript 4187884 4206702 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; gene_name "CA"; annotation "putative Protocadherin Fat 1"; Pfam "[Laminin_G_2] Laminin G domain|[Cadherin_2] Cadherin-like|[Cadherin]|[EGF] EGF-like domain|[Laminin_G_1] Laminin G domain"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "FAT1_HUMAN(e-value:1.8e-29;bit-score:127.0)"; Scaffold004 rebuild exon 4187884 4188212 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4188279 4188662 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4188897 4189022 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4189091 4189816 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4189968 4190535 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4190768 4191219 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4191302 4191839 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4191930 4192466 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4192709 4192852 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4192913 4193100 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4193180 4193743 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4193803 4194517 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4194671 4195380 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4195449 4195676 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4195744 4196169 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4196247 4196426 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4196495 4196890 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4196948 4197106 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4197285 4198237 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4198326 4198818 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4198902 4199405 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4199474 4200064 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4200131 4200341 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4200441 4200761 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4200857 4201233 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4201578 4201778 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4201938 4202573 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4202838 4203971 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4204481 4204981 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4205286 4205591 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4205744 4205803 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4205861 4205975 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4206052 4206425 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild exon 4206615 4206702 . - . gene_id "RvY_09686"; transcript_id "RvY_09686.2"; Scaffold004 rebuild transcript 4207757 4208042 . - . gene_id "RvY_09687"; transcript_id "RvY_09687.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4207757 4207865 . - . gene_id "RvY_09687"; transcript_id "RvY_09687.1"; Scaffold004 rebuild exon 4207993 4208042 . - . gene_id "RvY_09687"; transcript_id "RvY_09687.1"; Scaffold004 rebuild transcript 4210528 4210767 . - . gene_id "RvY_09688"; transcript_id "RvY_09688.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4210528 4210767 . - . gene_id "RvY_09688"; transcript_id "RvY_09688.1"; Scaffold004 rebuild transcript 4214356 4214649 . + . gene_id "RvY_09689"; transcript_id "RvY_09689.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4214356 4214649 . + . gene_id "RvY_09689"; transcript_id "RvY_09689.1"; Scaffold004 rebuild transcript 4215971 4216198 . - . gene_id "RvY_09690"; transcript_id "RvY_09690.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4215971 4216198 . - . gene_id "RvY_09690"; transcript_id "RvY_09690.1"; Scaffold004 rebuild transcript 4216225 4216392 . - . gene_id "RvY_09691"; transcript_id "RvY_09691.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4216225 4216392 . - . gene_id "RvY_09691"; transcript_id "RvY_09691.1"; Scaffold004 rebuild transcript 4217698 4227369 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; gene_name "HECTD1"; annotation "putative E3 ubiquitin-protein ligase HECTD1"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[HECT] HECT-domain (ubiquitin-transferase)|[Ank_5] Ankyrin repeats (many copies)"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K12231"; similar_genes "HECD1_HUMAN(e-value:7.5e-39;bit-score:158.0)"; Scaffold004 rebuild exon 4217698 4217796 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4217907 4217962 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4218087 4218228 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4218324 4218416 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4218485 4218712 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4218813 4219120 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4219197 4219448 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4219534 4219702 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4219779 4220523 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4220762 4221270 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4221404 4222029 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4222097 4222312 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4222383 4222615 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4222697 4222983 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4223072 4223230 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4223322 4223804 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4223869 4224214 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4224413 4224626 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4224694 4224884 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4224962 4225178 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4225377 4225710 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4225793 4226382 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4226456 4226628 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4226722 4226872 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild exon 4227084 4227369 . + . gene_id "RvY_09692"; transcript_id "RvY_09692.1"; Scaffold004 rebuild transcript 4227829 4232288 . - . gene_id "RvY_09693"; transcript_id "RvY_09693.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4227829 4228363 . - . gene_id "RvY_09693"; transcript_id "RvY_09693.1"; Scaffold004 rebuild exon 4228633 4229337 . - . gene_id "RvY_09693"; transcript_id "RvY_09693.1"; Scaffold004 rebuild exon 4229543 4230716 . - . gene_id "RvY_09693"; transcript_id "RvY_09693.1"; Scaffold004 rebuild exon 4230812 4231084 . - . gene_id "RvY_09693"; transcript_id "RvY_09693.1"; Scaffold004 rebuild exon 4231445 4232288 . - . gene_id "RvY_09693"; transcript_id "RvY_09693.1"; Scaffold004 rebuild transcript 4235498 4240982 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; gene_name "PTK2"; annotation "Protein-tyrosine kinase 2-beta"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[FERM_M] FERM central domain|[Focal_AT] Focal adhesion targeting region"; CDD "Catalytic Domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy."; EC "EC2.7.10.2"; KO "K05725"; similar_genes "FAK2_RAT(e-value:2.5e-71;bit-score:266.0)"; Scaffold004 rebuild exon 4235498 4235656 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4235886 4235915 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4236157 4236323 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4236389 4236476 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4236569 4236766 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4237374 4237514 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4237602 4237676 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4237751 4237852 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4238140 4238425 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4238516 4238704 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4238782 4238998 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4239058 4239248 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4239325 4239529 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4239604 4239703 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4239940 4240089 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4240171 4240317 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4240398 4240571 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4240639 4240719 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild exon 4240803 4240982 . + . gene_id "RvY_09694"; transcript_id "RvY_09694.1"; Scaffold004 rebuild transcript 4237160 4237354 . - . gene_id "RvY_09695"; transcript_id "RvY_09695.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4237160 4237354 . - . gene_id "RvY_09695"; transcript_id "RvY_09695.1"; Scaffold004 rebuild transcript 4241577 4244241 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[LacY_symp] LacY proton/sugar symporter|[MFS_1_like] MFS_1 like family"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold004 rebuild exon 4241577 4241745 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4241816 4241941 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4242029 4243007 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4243070 4243112 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4243181 4243278 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4243377 4243579 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4243664 4243846 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild exon 4244012 4244241 . + . gene_id "RvY_09696"; transcript_id "RvY_09696.1"; Scaffold004 rebuild transcript 4244456 4258689 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; gene_name "B41"; annotation "hypothetical protein."; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[FERM_N] FERM N-terminal domain|[WW]|[FERM_M] FERM central domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "FRPD4_HUMAN(e-value:1.9e-22;bit-score:104.0)"; Scaffold004 rebuild exon 4244456 4245546 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4245802 4246296 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4246676 4247380 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4247665 4247965 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4248443 4248618 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4248715 4248856 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4248953 4249057 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4249244 4249321 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4249404 4249626 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4249772 4249908 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4250015 4250134 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4250213 4250344 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4250436 4250663 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4250739 4250893 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4251004 4251179 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4251483 4251602 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild exon 4258529 4258689 . - . gene_id "RvY_09697"; transcript_id "RvY_09697.1"; Scaffold004 rebuild transcript 4254352 4254585 . + . gene_id "RvY_09698"; transcript_id "RvY_09698.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4254352 4254585 . + . gene_id "RvY_09698"; transcript_id "RvY_09698.1"; Scaffold004 rebuild transcript 4258544 4258708 . + . gene_id "RvY_09699"; transcript_id "RvY_09699.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4258544 4258708 . + . gene_id "RvY_09699"; transcript_id "RvY_09699.1"; Scaffold004 rebuild transcript 4265823 4265993 . - . gene_id "RvY_09700"; transcript_id "RvY_09700.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4265823 4265993 . - . gene_id "RvY_09700"; transcript_id "RvY_09700.1"; Scaffold004 rebuild transcript 4268917 4269761 . + . gene_id "RvY_09701"; transcript_id "RvY_09701.1"; annotation "hypothetical protein."; Pfam "[DUF2205] Predicted coiled-coil protein (DUF2205)"; similar_genes "SCOCB_DANRE(e-value:7.4e-20;bit-score:95.0)"; Scaffold004 rebuild exon 4268917 4268986 . + . gene_id "RvY_09701"; transcript_id "RvY_09701.1"; Scaffold004 rebuild exon 4269059 4269193 . + . gene_id "RvY_09701"; transcript_id "RvY_09701.1"; Scaffold004 rebuild exon 4269326 4269400 . + . gene_id "RvY_09701"; transcript_id "RvY_09701.1"; Scaffold004 rebuild exon 4269493 4269631 . + . gene_id "RvY_09701"; transcript_id "RvY_09701.1"; Scaffold004 rebuild exon 4269728 4269761 . + . gene_id "RvY_09701"; transcript_id "RvY_09701.1"; Scaffold004 rebuild transcript 4270498 4271180 . + . gene_id "RvY_09702"; transcript_id "RvY_09702.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4270498 4270931 . + . gene_id "RvY_09702"; transcript_id "RvY_09702.1"; Scaffold004 rebuild exon 4271000 4271180 . + . gene_id "RvY_09702"; transcript_id "RvY_09702.1"; Scaffold004 rebuild transcript 4271603 4271941 . + . gene_id "RvY_09703"; transcript_id "RvY_09703.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4271603 4271941 . + . gene_id "RvY_09703"; transcript_id "RvY_09703.1"; Scaffold004 rebuild transcript 4272172 4272664 . - . gene_id "RvY_09704"; transcript_id "RvY_09704.1"; annotation "hypothetical protein."; Pfam "[Pet191_N] Cytochrome c oxidase assembly protein PET191"; Scaffold004 rebuild exon 4272172 4272216 . - . gene_id "RvY_09704"; transcript_id "RvY_09704.1"; Scaffold004 rebuild exon 4272383 4272484 . - . gene_id "RvY_09704"; transcript_id "RvY_09704.1"; Scaffold004 rebuild exon 4272563 4272664 . - . gene_id "RvY_09704"; transcript_id "RvY_09704.1"; Scaffold004 rebuild transcript 4273696 4274124 . + . gene_id "RvY_09705"; transcript_id "RvY_09705.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4273696 4274124 . + . gene_id "RvY_09705"; transcript_id "RvY_09705.1"; Scaffold004 rebuild transcript 4273683 4274124 . + . gene_id "RvY_09705"; transcript_id "RvY_09705.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4273683 4273723 . + . gene_id "RvY_09705"; transcript_id "RvY_09705.2"; Scaffold004 rebuild exon 4273809 4274124 . + . gene_id "RvY_09705"; transcript_id "RvY_09705.2"; Scaffold004 rebuild transcript 4274615 4276226 . - . gene_id "RvY_09706"; transcript_id "RvY_09706.1"; gene_name "GRX_GRX_like"; annotation "hypothetical protein."; CDD "Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox Scaffold004 rebuild exon 4274615 4274806 . - . gene_id "RvY_09706"; transcript_id "RvY_09706.1"; Scaffold004 rebuild exon 4274871 4274936 . - . gene_id "RvY_09706"; transcript_id "RvY_09706.1"; Scaffold004 rebuild exon 4275391 4275627 . - . gene_id "RvY_09706"; transcript_id "RvY_09706.1"; Scaffold004 rebuild exon 4275707 4275830 . - . gene_id "RvY_09706"; transcript_id "RvY_09706.1"; Scaffold004 rebuild exon 4275916 4276226 . - . gene_id "RvY_09706"; transcript_id "RvY_09706.1"; Scaffold004 rebuild transcript 4278158 4282608 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; gene_name "GAB1"; annotation "GRB2-associated-binding protein 1"; Pfam "[PH]"; CDD "Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains."; KO "K09593"; Scaffold004 rebuild exon 4278158 4278454 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild exon 4278522 4278754 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild exon 4278990 4279419 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild exon 4279628 4280181 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild exon 4280291 4280462 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild exon 4280544 4280672 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild exon 4282552 4282608 . - . gene_id "RvY_09707"; transcript_id "RvY_09707.1"; Scaffold004 rebuild transcript 4282685 4283524 . - . gene_id "RvY_09708"; transcript_id "RvY_09708.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4282685 4282759 . - . gene_id "RvY_09708"; transcript_id "RvY_09708.1"; Scaffold004 rebuild exon 4282815 4282930 . - . gene_id "RvY_09708"; transcript_id "RvY_09708.1"; Scaffold004 rebuild exon 4283395 4283524 . - . gene_id "RvY_09708"; transcript_id "RvY_09708.1"; Scaffold004 rebuild transcript 4283655 4286997 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; gene_name "CAPN15"; annotation "putative Calpain-D"; Pfam "[Peptidase_C2] Calpain family cysteine protease|[zf-RanBP] Zn-finger in Ran binding protein and others"; CDD "Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction."; EC "EC3.4.22.-"; KO "K08582"; similar_genes "CAND_DROME(e-value:1.3e-38;bit-score:157.0)"; Scaffold004 rebuild exon 4283655 4284319 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4284555 4284732 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4284797 4284989 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4285047 4285346 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4285438 4285990 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4286052 4286242 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4286306 4286454 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4286573 4286652 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild exon 4286721 4286997 . + . gene_id "RvY_09709"; transcript_id "RvY_09709.1"; Scaffold004 rebuild transcript 4287720 4289124 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; gene_name "HRD1"; annotation "hypothetical protein."; Pfam "[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain"; CDD "HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]"; KO "K15698"; similar_genes "RN121_CAEEL(e-value:4.4e-24;bit-score:109.0)"; Scaffold004 rebuild exon 4287720 4287811 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild exon 4287883 4287993 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild exon 4288080 4288110 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild exon 4288172 4288326 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild exon 4288396 4288624 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild exon 4288702 4288835 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild exon 4288902 4289124 . + . gene_id "RvY_09710"; transcript_id "RvY_09710.1"; Scaffold004 rebuild transcript 4288684 4289094 . - . gene_id "RvY_09711"; transcript_id "RvY_09711.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4288684 4289094 . - . gene_id "RvY_09711"; transcript_id "RvY_09711.1"; Scaffold004 rebuild transcript 4290459 4291307 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4290459 4290771 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.1"; Scaffold004 rebuild exon 4290849 4290926 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.1"; Scaffold004 rebuild exon 4291035 4291195 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.1"; Scaffold004 rebuild exon 4291257 4291307 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.1"; Scaffold004 rebuild transcript 4290485 4291307 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4290485 4290577 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.2"; Scaffold004 rebuild exon 4290639 4290771 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.2"; Scaffold004 rebuild exon 4290849 4290926 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.2"; Scaffold004 rebuild exon 4291035 4291195 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.2"; Scaffold004 rebuild exon 4291257 4291307 . - . gene_id "RvY_09712"; transcript_id "RvY_09712.2"; Scaffold004 rebuild transcript 4296163 4299007 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; annotation "hypothetical protein."; Pfam "[Yip1]"; Scaffold004 rebuild exon 4296163 4296816 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild exon 4296882 4297036 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild exon 4297120 4297233 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild exon 4297347 4297443 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild exon 4297519 4297593 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild exon 4298671 4298840 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild exon 4298950 4299007 . - . gene_id "RvY_09713"; transcript_id "RvY_09713.1"; Scaffold004 rebuild transcript 4305936 4306439 . + . gene_id "RvY_09714"; transcript_id "RvY_09714.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4305936 4306439 . + . gene_id "RvY_09714"; transcript_id "RvY_09714.1"; Scaffold004 rebuild transcript 4307613 4307792 . + . gene_id "RvY_09715"; transcript_id "RvY_09715.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4307613 4307792 . + . gene_id "RvY_09715"; transcript_id "RvY_09715.1"; Scaffold004 rebuild transcript 4308871 4310550 . + . gene_id "RvY_09716"; transcript_id "RvY_09716.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4308871 4308942 . + . gene_id "RvY_09716"; transcript_id "RvY_09716.1"; Scaffold004 rebuild exon 4310335 4310550 . + . gene_id "RvY_09716"; transcript_id "RvY_09716.1"; Scaffold004 rebuild transcript 4312289 4313508 . + . gene_id "RvY_09717"; transcript_id "RvY_09717.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4312289 4312439 . + . gene_id "RvY_09717"; transcript_id "RvY_09717.1"; Scaffold004 rebuild exon 4313087 4313508 . + . gene_id "RvY_09717"; transcript_id "RvY_09717.1"; Scaffold004 rebuild transcript 4313713 4313925 . + . gene_id "RvY_09718"; transcript_id "RvY_09718.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4313713 4313925 . + . gene_id "RvY_09718"; transcript_id "RvY_09718.1"; Scaffold004 rebuild transcript 4317924 4320107 . + . gene_id "RvY_09719"; transcript_id "RvY_09719.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4317924 4318068 . + . gene_id "RvY_09719"; transcript_id "RvY_09719.1"; Scaffold004 rebuild exon 4318154 4318758 . + . gene_id "RvY_09719"; transcript_id "RvY_09719.1"; Scaffold004 rebuild exon 4318867 4319544 . + . gene_id "RvY_09719"; transcript_id "RvY_09719.1"; Scaffold004 rebuild exon 4319607 4320107 . + . gene_id "RvY_09719"; transcript_id "RvY_09719.1"; Scaffold004 rebuild transcript 4320810 4322205 . + . gene_id "RvY_09720"; transcript_id "RvY_09720.1"; gene_name "STKc_CDK_like"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH."; EC "EC2.7.11.22"; similar_genes "CDC28_YEAST(e-value:1.8e-12;bit-score:70.0)"; Scaffold004 rebuild exon 4320810 4320951 . + . gene_id "RvY_09720"; transcript_id "RvY_09720.1"; Scaffold004 rebuild exon 4321117 4321230 . + . gene_id "RvY_09720"; transcript_id "RvY_09720.1"; Scaffold004 rebuild exon 4321297 4321475 . + . gene_id "RvY_09720"; transcript_id "RvY_09720.1"; Scaffold004 rebuild exon 4321549 4322205 . + . gene_id "RvY_09720"; transcript_id "RvY_09720.1"; Scaffold004 rebuild transcript 4323224 4328134 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; gene_name "ATPeVI"; annotation "Probable V-type proton ATPase 116 kDa subunit a"; Pfam "[V_ATPase_I] V-type ATPase 116kDa subunit family"; EC "EC3.6.3.14"; KO "K02154"; similar_genes "(1)VPP1_CAEEL(e-value:9.0e-116;bit-score:414.0)(2)VPP1_CAEEL(e-value:4.6e-115;bit-score:411.0)"; Scaffold004 rebuild exon 4323224 4323340 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4323439 4323517 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4323624 4323721 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4323795 4323923 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4324103 4324212 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4324802 4324928 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4325003 4325085 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4325164 4325257 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4325341 4325553 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4325847 4326137 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4326211 4326356 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4326435 4326653 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4326889 4327135 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4327212 4327310 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4327391 4327510 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4327592 4327709 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4327786 4327957 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild exon 4328038 4328134 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.1"; Scaffold004 rebuild transcript 4323224 4328134 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; gene_name "ATPeVI"; annotation "Probable V-type proton ATPase 116 kDa subunit a"; Pfam "[V_ATPase_I] V-type ATPase 116kDa subunit family"; EC "EC3.6.3.14"; KO "K02154"; similar_genes "(1)VPP1_CAEEL(e-value:9.0e-116;bit-score:414.0)(2)VPP1_CAEEL(e-value:4.6e-115;bit-score:411.0)"; Scaffold004 rebuild exon 4323224 4323340 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4323439 4323517 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4323624 4323721 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4323795 4323923 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4324502 4324602 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4324802 4324928 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4325003 4325085 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4325164 4325257 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4325341 4325553 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4325847 4326137 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4326211 4326356 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4326435 4326653 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4326889 4327135 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4327212 4327310 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4327391 4327510 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4327592 4327709 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4327786 4327957 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild exon 4328038 4328134 . + . gene_id "RvY_09721"; transcript_id "RvY_09721.2"; Scaffold004 rebuild transcript 4328493 4329825 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; gene_name "STX8"; annotation "syntaxin 8"; Pfam "[SNARE]"; KO "K08501"; Scaffold004 rebuild exon 4328493 4328560 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4328619 4328739 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4328885 4328961 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4329044 4329300 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4329375 4329469 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4329533 4329590 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4329666 4329710 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild exon 4329812 4329825 . - . gene_id "RvY_09722"; transcript_id "RvY_09722.1"; Scaffold004 rebuild transcript 4331057 4336922 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; annotation "Protein strawberry notch"; Pfam "[AAA_34] P-loop containing NTP hydrolase pore-1|[Helicase_C_4] Helicase_C-like"; similar_genes "SBNO_DROME(e-value:7.8e-79;bit-score:291.0)"; Scaffold004 rebuild exon 4331057 4331211 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4331411 4331846 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4331921 4332102 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4332182 4332842 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4333089 4333223 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4333290 4333438 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4333519 4333632 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4333841 4334197 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4334302 4334456 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4334527 4334624 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4334691 4334873 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4334936 4335089 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4335217 4335441 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4335512 4335836 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4335895 4336082 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4336166 4336512 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4336574 4336662 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild exon 4336730 4336922 . - . gene_id "RvY_09723"; transcript_id "RvY_09723.1"; Scaffold004 rebuild transcript 4337740 4341565 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; gene_name "RBM26"; annotation "RNA-binding protein 26"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; KO "K13192"; similar_genes "RBM26_XENLA(e-value:2.2e-06;bit-score:50.0)"; Scaffold004 rebuild exon 4337740 4337932 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4338007 4338122 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4338226 4338332 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4338415 4338602 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4338741 4338932 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4338995 4339135 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4339225 4339427 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4339498 4339641 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4339713 4339817 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4339908 4340144 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4340228 4340362 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4340442 4340579 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4340648 4340701 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4340775 4340999 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4341084 4341176 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4341259 4341468 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild exon 4341530 4341565 . + . gene_id "RvY_09724"; transcript_id "RvY_09724.1"; Scaffold004 rebuild transcript 4341630 4341935 . - . gene_id "RvY_09725"; transcript_id "RvY_09725.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4341630 4341935 . - . gene_id "RvY_09725"; transcript_id "RvY_09725.1"; Scaffold004 rebuild transcript 4343110 4349603 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; annotation "Probable global transcription activator SNF2L1"; Pfam "[SLIDE]|[SNF2_N] SNF2 family N-terminal domain|[HAND]|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; EC "EC3.6.1.-"; similar_genes "SMCA1_MOUSE(e-value:1.9e-90;bit-score:330.0)"; Scaffold004 rebuild exon 4343110 4343213 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4343515 4343845 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4344148 4344282 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4344358 4344509 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4344596 4344684 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4344772 4344872 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4344952 4345131 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4345213 4345368 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4345426 4345629 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4345709 4345830 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4345903 4346251 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4346338 4346490 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4346732 4347016 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4347126 4347407 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4347467 4347580 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4347719 4347844 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4347927 4348043 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4348143 4348408 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4348475 4348613 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4348693 4348902 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild exon 4349025 4349603 . + . gene_id "RvY_09726"; transcript_id "RvY_09726.1"; Scaffold004 rebuild transcript 4349622 4349939 . + . gene_id "RvY_09727"; transcript_id "RvY_09727.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4349622 4349939 . + . gene_id "RvY_09727"; transcript_id "RvY_09727.1"; Scaffold004 rebuild transcript 4350449 4351180 . + . gene_id "RvY_09728"; transcript_id "RvY_09728.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4350449 4351180 . + . gene_id "RvY_09728"; transcript_id "RvY_09728.1"; Scaffold004 rebuild transcript 4350449 4351215 . + . gene_id "RvY_09728"; transcript_id "RvY_09728.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4350449 4351132 . + . gene_id "RvY_09728"; transcript_id "RvY_09728.2"; Scaffold004 rebuild exon 4351207 4351215 . + . gene_id "RvY_09728"; transcript_id "RvY_09728.2"; Scaffold004 rebuild transcript 4351223 4352123 . + . gene_id "RvY_09729"; transcript_id "RvY_09729.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4351223 4351460 . + . gene_id "RvY_09729"; transcript_id "RvY_09729.1"; Scaffold004 rebuild exon 4351522 4352123 . + . gene_id "RvY_09729"; transcript_id "RvY_09729.1"; Scaffold004 rebuild transcript 4353051 4356114 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.1"; gene_name "NF-X1-zinc-finger"; annotation "NF-X1-type zinc finger protein NFXL1"; Pfam "[zf-NF-X1] NF-X1 type zinc finger"; CDD "Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms."; KO "K15683"; similar_genes "NFXL1_XENLA(e-value:5.0e-57;bit-score:219.0)"; Scaffold004 rebuild exon 4353051 4353138 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.1"; Scaffold004 rebuild exon 4353197 4354037 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.1"; Scaffold004 rebuild exon 4354247 4355225 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.1"; Scaffold004 rebuild exon 4355299 4355386 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.1"; Scaffold004 rebuild exon 4355525 4356114 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.1"; Scaffold004 rebuild transcript 4353120 4356176 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; gene_name "NF-X1-zinc-finger"; annotation "NF-X1-type zinc finger protein NFXL1"; Pfam "[zf-NF-X1] NF-X1 type zinc finger"; CDD "Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms."; KO "K15683"; similar_genes "NFXL1_XENLA(e-value:5.0e-57;bit-score:219.0)"; Scaffold004 rebuild exon 4353120 4353138 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; Scaffold004 rebuild exon 4353197 4354037 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; Scaffold004 rebuild exon 4354247 4355225 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; Scaffold004 rebuild exon 4355299 4355386 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; Scaffold004 rebuild exon 4355525 4355871 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; Scaffold004 rebuild exon 4355946 4356176 . + . gene_id "RvY_09730"; transcript_id "RvY_09730.2"; Scaffold004 rebuild transcript 4354225 4354789 . - . gene_id "RvY_09731"; transcript_id "RvY_09731.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4354225 4354484 . - . gene_id "RvY_09731"; transcript_id "RvY_09731.1"; Scaffold004 rebuild exon 4354768 4354789 . - . gene_id "RvY_09731"; transcript_id "RvY_09731.1"; Scaffold004 rebuild transcript 4356247 4357368 . - . gene_id "RvY_09732"; transcript_id "RvY_09732.1"; annotation "hypothetical protein."; Pfam "[Frag1] Frag1/DRAM/Sfk1 family"; similar_genes "PGAP2_XENTR(e-value:3.6e-13;bit-score:73.0)"; Scaffold004 rebuild exon 4356247 4356392 . - . gene_id "RvY_09732"; transcript_id "RvY_09732.1"; Scaffold004 rebuild exon 4356458 4356676 . - . gene_id "RvY_09732"; transcript_id "RvY_09732.1"; Scaffold004 rebuild exon 4356789 4356982 . - . gene_id "RvY_09732"; transcript_id "RvY_09732.1"; Scaffold004 rebuild exon 4357082 4357146 . - . gene_id "RvY_09732"; transcript_id "RvY_09732.1"; Scaffold004 rebuild exon 4357216 4357368 . - . gene_id "RvY_09732"; transcript_id "RvY_09732.1"; Scaffold004 rebuild transcript 4357836 4359797 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; gene_name "SpoU"; annotation "hypothetical protein."; Pfam "[SpoU_sub_bind] RNA 2'-O ribose methyltransferase substrate binding|[SpoU_methylase] SpoU rRNA Methylase family"; CDD "rRNA methylases [Translation, ribosomal structure and biogenesis]"; KO "K15507"; Scaffold004 rebuild exon 4357836 4358350 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4358451 4358694 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4358778 4358891 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4358978 4359051 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4359161 4359260 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4359336 4359462 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4359519 4359641 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild exon 4359727 4359797 . + . gene_id "RvY_09733"; transcript_id "RvY_09733.1"; Scaffold004 rebuild transcript 4362167 4364319 . + . gene_id "RvY_09734"; transcript_id "RvY_09734.1"; annotation "hypothetical protein."; Pfam "[ATG13] Autophagy-related protein 13"; Scaffold004 rebuild exon 4362167 4362337 . + . gene_id "RvY_09734"; transcript_id "RvY_09734.1"; Scaffold004 rebuild exon 4362399 4362667 . + . gene_id "RvY_09734"; transcript_id "RvY_09734.1"; Scaffold004 rebuild exon 4362750 4362846 . + . gene_id "RvY_09734"; transcript_id "RvY_09734.1"; Scaffold004 rebuild exon 4363186 4363815 . + . gene_id "RvY_09734"; transcript_id "RvY_09734.1"; Scaffold004 rebuild exon 4364077 4364319 . + . gene_id "RvY_09734"; transcript_id "RvY_09734.1"; Scaffold004 rebuild transcript 4364896 4369473 . - . gene_id "RvY_09735"; transcript_id "RvY_09735.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4364896 4367039 . - . gene_id "RvY_09735"; transcript_id "RvY_09735.1"; Scaffold004 rebuild exon 4367313 4367808 . - . gene_id "RvY_09735"; transcript_id "RvY_09735.1"; Scaffold004 rebuild exon 4368352 4368705 . - . gene_id "RvY_09735"; transcript_id "RvY_09735.1"; Scaffold004 rebuild exon 4369363 4369473 . - . gene_id "RvY_09735"; transcript_id "RvY_09735.1"; Scaffold004 rebuild transcript 4373650 4374077 . - . gene_id "RvY_09736"; transcript_id "RvY_09736.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4373650 4373924 . - . gene_id "RvY_09736"; transcript_id "RvY_09736.1"; Scaffold004 rebuild exon 4374053 4374077 . - . gene_id "RvY_09736"; transcript_id "RvY_09736.1"; Scaffold004 rebuild transcript 4375981 4376415 . + . gene_id "RvY_09737"; transcript_id "RvY_09737.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4375981 4376415 . + . gene_id "RvY_09737"; transcript_id "RvY_09737.1"; Scaffold004 rebuild transcript 4376446 4381854 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; gene_name "KH"; annotation "putative RNA-binding protein MEX3C"; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[KH_3] KH domain|[KH_1] KH domain"; CDD "K homology RNA-binding domain."; KO "K15686"; similar_genes "MEX3C_MOUSE(e-value:1.8e-31;bit-score:134.0)"; Scaffold004 rebuild exon 4376446 4376515 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild exon 4376592 4376816 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild exon 4379565 4379764 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild exon 4380651 4380807 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild exon 4380894 4381106 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild exon 4381235 4381582 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild exon 4381646 4381854 . + . gene_id "RvY_09738"; transcript_id "RvY_09738.1"; Scaffold004 rebuild transcript 4383013 4385236 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4383013 4383181 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4383284 4383395 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4383465 4383618 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4383704 4384022 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4384094 4384180 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4384700 4384846 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4384941 4385063 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild exon 4385139 4385236 . + . gene_id "RvY_09739"; transcript_id "RvY_09739.1"; Scaffold004 rebuild transcript 4386139 4387370 . + . gene_id "RvY_09740"; transcript_id "RvY_09740.1"; gene_name "K01082"; annotation "3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]"; Pfam "[Inositol_P] Inositol monophosphatase family"; CDD "IPPase; Inositol polyphosphate-1-phosphatase, a member of the Mg++ dependent family of inositol monophosphatase-like domains, hydrolyzes the 1' position phosphate from inositol 1,3,4-trisphosphate and inositol 1,4-bisphosphate. Members in this group may also exhibit 3'-phosphoadenosine 5'-phosphate phosphatase activity, and they all appear to be inhibited by lithium. IPPase is one of the proposed targets of Li+ therapy in manic-depressive illness."; EC "EC3.1.3.25|EC3.1.3.7"; KO "K01082"; similar_genes "IMPA3_DROPS(e-value:3.5e-11;bit-score:66.0)"; Scaffold004 rebuild exon 4386139 4386141 . + . gene_id "RvY_09740"; transcript_id "RvY_09740.1"; Scaffold004 rebuild exon 4386231 4386632 . + . gene_id "RvY_09740"; transcript_id "RvY_09740.1"; Scaffold004 rebuild exon 4386813 4387370 . + . gene_id "RvY_09740"; transcript_id "RvY_09740.1"; Scaffold004 rebuild transcript 4388051 4390369 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4388051 4388299 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; Scaffold004 rebuild exon 4388374 4388476 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; Scaffold004 rebuild exon 4388537 4388595 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; Scaffold004 rebuild exon 4388653 4389021 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; Scaffold004 rebuild exon 4389286 4389636 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; Scaffold004 rebuild exon 4389938 4390369 . + . gene_id "RvY_09741"; transcript_id "RvY_09741.1"; Scaffold004 rebuild transcript 4390432 4390620 . - . gene_id "RvY_09742"; transcript_id "RvY_09742.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4390432 4390620 . - . gene_id "RvY_09742"; transcript_id "RvY_09742.1"; Scaffold004 rebuild transcript 4393920 4396389 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.1"; gene_name "(1)POU4F"; annotation "(1)putative Inhibitory POU protein(2)hypothetical protein."; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; CDD "(1)Found in Pit-Oct-Unc transcription factors."; KO "(1)K09366"; similar_genes "(1)IPOU_DROME(e-value:4.1e-31;bit-score:132.0)"; Scaffold004 rebuild exon 4393920 4393961 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.1"; Scaffold004 rebuild exon 4394033 4394620 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.1"; Scaffold004 rebuild exon 4394944 4395240 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.1"; Scaffold004 rebuild exon 4395958 4396107 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.1"; Scaffold004 rebuild exon 4396252 4396389 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.1"; Scaffold004 rebuild transcript 4394857 4396389 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.2"; gene_name "(1)POU4F"; annotation "(1)putative Inhibitory POU protein(2)hypothetical protein."; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; CDD "(1)Found in Pit-Oct-Unc transcription factors."; KO "(1)K09366"; similar_genes "(1)IPOU_DROME(e-value:4.1e-31;bit-score:132.0)"; Scaffold004 rebuild exon 4394857 4395240 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.2"; Scaffold004 rebuild exon 4395958 4396107 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.2"; Scaffold004 rebuild exon 4396252 4396389 . - . gene_id "RvY_09743"; transcript_id "RvY_09743.2"; Scaffold004 rebuild transcript 4397361 4397911 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4397361 4397454 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.1"; Scaffold004 rebuild exon 4397523 4397665 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.1"; Scaffold004 rebuild exon 4397741 4397911 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.1"; Scaffold004 rebuild transcript 4397535 4397945 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4397535 4397665 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.2"; Scaffold004 rebuild exon 4397741 4397945 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.2"; Scaffold004 rebuild transcript 4397246 4397529 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.3"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4397246 4397454 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.3"; Scaffold004 rebuild exon 4397523 4397529 . - . gene_id "RvY_09744"; transcript_id "RvY_09744.3"; Scaffold004 rebuild transcript 4398599 4399629 . - . gene_id "RvY_09745"; transcript_id "RvY_09745.1"; gene_name "RING"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)"; Scaffold004 rebuild exon 4398599 4398748 . - . gene_id "RvY_09745"; transcript_id "RvY_09745.1"; Scaffold004 rebuild exon 4398825 4398911 . - . gene_id "RvY_09745"; transcript_id "RvY_09745.1"; Scaffold004 rebuild exon 4398974 4399185 . - . gene_id "RvY_09745"; transcript_id "RvY_09745.1"; Scaffold004 rebuild exon 4399353 4399629 . - . gene_id "RvY_09745"; transcript_id "RvY_09745.1"; Scaffold004 rebuild transcript 4400155 4401086 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4400155 4400307 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.1"; Scaffold004 rebuild exon 4400365 4400448 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.1"; Scaffold004 rebuild exon 4400514 4400636 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.1"; Scaffold004 rebuild exon 4400699 4400850 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.1"; Scaffold004 rebuild exon 4400924 4401086 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.1"; Scaffold004 rebuild transcript 4400424 4401086 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4400424 4400636 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.2"; Scaffold004 rebuild exon 4400699 4400850 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.2"; Scaffold004 rebuild exon 4400924 4401086 . - . gene_id "RvY_09746"; transcript_id "RvY_09746.2"; Scaffold004 rebuild transcript 4403657 4407303 . - . gene_id "RvY_09747"; transcript_id "RvY_09747.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4403657 4404464 . - . gene_id "RvY_09747"; transcript_id "RvY_09747.1"; Scaffold004 rebuild exon 4404550 4406225 . - . gene_id "RvY_09747"; transcript_id "RvY_09747.1"; Scaffold004 rebuild exon 4406305 4407303 . - . gene_id "RvY_09747"; transcript_id "RvY_09747.1"; Scaffold004 rebuild transcript 4408248 4414716 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; gene_name "AMOP"; annotation "hypothetical protein."; Pfam "[AMOP]|[VWD] von Willebrand factor type D domain|[NIDO] Nidogen-like"; CDD "Adhesion-associated domain present in MUC4 and other proteins."; similar_genes "TECTA_CHICK(e-value:2.0e-11;bit-score:67.0)"; Scaffold004 rebuild exon 4408248 4408452 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4408515 4408707 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4408790 4409121 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4409182 4409329 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4409398 4409524 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4409582 4409718 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4410379 4410555 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4410630 4410779 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4410875 4411010 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4411063 4411332 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4411399 4411543 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4411613 4411829 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4411896 4412033 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4412131 4412382 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4412442 4412610 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4412678 4412966 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4413100 4413335 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4413634 4413764 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild exon 4414458 4414716 . - . gene_id "RvY_09748"; transcript_id "RvY_09748.1"; Scaffold004 rebuild transcript 4418728 4446242 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; gene_name "SAC6"; annotation "hypothetical protein."; Pfam "[KASH] Nuclear envelope localisation domain|[CH] Calponin homology (CH) domain"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; similar_genes "PLEC1_HUMAN(e-value:2.3e-10;bit-score:63.0)"; Scaffold004 rebuild exon 4418728 4418890 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4419699 4419760 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4419843 4419938 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4420137 4420220 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4420329 4420421 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4420545 4420756 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4421031 4421227 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4421378 4421475 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4421615 4421758 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4421822 4421997 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4422100 4422241 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4422443 4423046 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4423134 4423194 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4423477 4423585 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4423771 4423910 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4424150 4424455 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4425257 4425691 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4426003 4426739 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4426804 4427168 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4427272 4427496 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4427583 4428698 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4428997 4429306 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4429411 4429890 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4429973 4430224 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4430303 4430431 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4430498 4430737 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4430920 4432076 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4432405 4432765 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4432840 4433621 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4433824 4434039 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4434313 4434489 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4434734 4435330 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4436141 4436527 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4436820 4437528 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4437793 4438214 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4438341 4438865 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4438943 4439440 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4439644 4439997 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4440111 4440867 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4441053 4441616 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4441812 4442138 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4442200 4442423 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4442474 4443154 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4443227 4443628 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4443782 4444355 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4444421 4445016 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4445100 4445387 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4445450 4445647 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4445821 4445945 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild exon 4446062 4446242 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.1"; Scaffold004 rebuild transcript 4418728 4446242 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; gene_name "SAC6"; annotation "hypothetical protein."; Pfam "[KASH] Nuclear envelope localisation domain|[CH] Calponin homology (CH) domain"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; similar_genes "PLEC1_HUMAN(e-value:2.3e-10;bit-score:63.0)"; Scaffold004 rebuild exon 4418728 4418890 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4419699 4419760 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4419843 4419938 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4420137 4420220 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4420329 4420421 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4420545 4420756 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4421031 4421227 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4421378 4421475 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4421615 4421758 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4421822 4421997 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4422100 4422241 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4422443 4423046 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4423134 4423194 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4423477 4423585 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4423771 4423910 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4424150 4424455 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4425257 4425691 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4426003 4426739 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4426804 4427168 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4427272 4427496 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4427583 4428698 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4428997 4429306 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4429411 4429890 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4429973 4430224 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4430303 4430431 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4430498 4430737 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4430920 4432076 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4432405 4432765 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4432840 4433621 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4433824 4434039 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4434313 4434489 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4434734 4435330 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4436141 4436527 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4436820 4437528 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4437793 4438214 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4438341 4438865 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4438943 4439440 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4439644 4439997 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4440111 4440867 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4441053 4441616 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4441812 4442138 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4442200 4442423 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4442474 4443154 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4443227 4443628 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4443782 4444355 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4444421 4445016 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4445100 4445387 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4445450 4445605 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4445821 4445945 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild exon 4446062 4446242 . + . gene_id "RvY_09749"; transcript_id "RvY_09749.2"; Scaffold004 rebuild transcript 4447223 4447951 . + . gene_id "RvY_09750"; transcript_id "RvY_09750.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4447223 4447288 . + . gene_id "RvY_09750"; transcript_id "RvY_09750.1"; Scaffold004 rebuild exon 4447886 4447951 . + . gene_id "RvY_09750"; transcript_id "RvY_09750.1"; Scaffold004 rebuild transcript 4451028 4451222 . - . gene_id "RvY_09751"; transcript_id "RvY_09751.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4451028 4451222 . - . gene_id "RvY_09751"; transcript_id "RvY_09751.1"; Scaffold004 rebuild transcript 4453770 4453961 . - . gene_id "RvY_09752"; transcript_id "RvY_09752.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4453770 4453961 . - . gene_id "RvY_09752"; transcript_id "RvY_09752.1"; Scaffold004 rebuild transcript 4454230 4474545 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; gene_name "EPHB1"; annotation "Ephrin type-A receptor 5"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[SAM_2] SAM domain (Sterile alpha motif)|[Ephrin_lbd] Ephrin receptor ligand binding domain|[SAM_1] SAM domain (Sterile alpha motif)|[fn3] Fibronectin type III domain|[GCC2_GCC3] GCC2 and GCC3"; CDD "Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis."; EC "EC2.7.10.1"; KO "K05110"; similar_genes "EPHA5_HUMAN(e-value:4.4e-92;bit-score:335.0)"; Scaffold004 rebuild exon 4454230 4454332 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4462182 4462264 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4465263 4465598 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4465669 4466002 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4471553 4471708 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4471774 4472085 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4472145 4472462 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4472626 4473239 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4473433 4473531 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4473618 4473728 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4473800 4473994 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4474066 4474208 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild exon 4474275 4474545 . + . gene_id "RvY_09753"; transcript_id "RvY_09753.1"; Scaffold004 rebuild transcript 4475206 4475403 . - . gene_id "RvY_09754"; transcript_id "RvY_09754.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4475206 4475403 . - . gene_id "RvY_09754"; transcript_id "RvY_09754.1"; Scaffold004 rebuild transcript 4475314 4477263 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; gene_name "SERPIN"; annotation "hypothetical protein."; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia."; Scaffold004 rebuild exon 4475314 4475346 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4475432 4475924 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476007 4476041 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476116 4476146 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476204 4476277 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476343 4476674 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476741 4476768 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476847 4476871 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4476956 4477120 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild exon 4477196 4477263 . + . gene_id "RvY_09755"; transcript_id "RvY_09755.1"; Scaffold004 rebuild transcript 4477688 4482321 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; product "PI3Kc"; gene_name "PIK3C"; annotation "PI3Kc | putative Phosphatidylinositol 3-kinase 3"; Pfam "[PI3K_p85B] PI3-kinase family, p85-binding domain|[PI3Ka] Phosphoinositide 3-kinase family, accessory domain (PIK domain)|[PI3K_C2] Phosphoinositide 3-kinase C2|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase|[PI3K_rbd] PI3-kinase family, ras-binding domain"; CDD "Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates PtdIns and PtdIns(4)P. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma)."; EC "EC2.7.1.137|EC2.7.1.153"; KO "K00922"; similar_genes "PI3K3_DICDI(e-value:6.9e-29;bit-score:125.0)"; Scaffold004 rebuild exon 4477688 4478396 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4478462 4478540 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4478631 4478752 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4478832 4478929 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4478997 4479159 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4479220 4479323 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4479391 4479555 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4479623 4479704 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4479771 4479856 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4479925 4480221 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4480577 4480867 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4480934 4481406 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4481609 4481818 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild exon 4481967 4482321 . - . gene_id "RvY_09756"; transcript_id "RvY_09756.1"; Scaffold004 rebuild transcript 4483177 4485106 . - . gene_id "RvY_09757"; transcript_id "RvY_09757.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4483177 4483764 . - . gene_id "RvY_09757"; transcript_id "RvY_09757.1"; Scaffold004 rebuild exon 4485032 4485106 . - . gene_id "RvY_09757"; transcript_id "RvY_09757.1"; Scaffold004 rebuild transcript 4485519 4487341 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; gene_name "PDI_a_TMX"; annotation "hypothetical protein."; Pfam "[Thioredoxin]"; CDD "PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox Scaffold004 rebuild exon 4485519 4485785 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4485866 4485993 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4486080 4486134 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4486257 4486302 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4486370 4486417 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4486480 4486560 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4486667 4486712 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4486990 4487105 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild exon 4487169 4487341 . - . gene_id "RvY_09758"; transcript_id "RvY_09758.1"; Scaffold004 rebuild transcript 4489097 4490029 . - . gene_id "RvY_09759"; transcript_id "RvY_09759.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4489097 4489253 . - . gene_id "RvY_09759"; transcript_id "RvY_09759.1"; Scaffold004 rebuild exon 4489439 4489844 . - . gene_id "RvY_09759"; transcript_id "RvY_09759.1"; Scaffold004 rebuild exon 4489912 4490029 . - . gene_id "RvY_09759"; transcript_id "RvY_09759.1"; Scaffold004 rebuild transcript 4490740 4492343 . - . gene_id "RvY_09760"; transcript_id "RvY_09760.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4490740 4490894 . - . gene_id "RvY_09760"; transcript_id "RvY_09760.1"; Scaffold004 rebuild exon 4491872 4492343 . - . gene_id "RvY_09760"; transcript_id "RvY_09760.1"; Scaffold004 rebuild transcript 4492546 4493273 . + . gene_id "RvY_09761"; transcript_id "RvY_09761.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4492546 4492740 . + . gene_id "RvY_09761"; transcript_id "RvY_09761.1"; Scaffold004 rebuild exon 4493199 4493273 . + . gene_id "RvY_09761"; transcript_id "RvY_09761.1"; Scaffold004 rebuild transcript 4495670 4496145 . - . gene_id "RvY_09762"; transcript_id "RvY_09762.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4495670 4495810 . - . gene_id "RvY_09762"; transcript_id "RvY_09762.1"; Scaffold004 rebuild exon 4496050 4496145 . - . gene_id "RvY_09762"; transcript_id "RvY_09762.1"; Scaffold004 rebuild transcript 4496633 4497788 . + . gene_id "RvY_09763"; transcript_id "RvY_09763.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4496633 4496750 . + . gene_id "RvY_09763"; transcript_id "RvY_09763.1"; Scaffold004 rebuild exon 4496839 4497083 . + . gene_id "RvY_09763"; transcript_id "RvY_09763.1"; Scaffold004 rebuild exon 4497201 4497353 . + . gene_id "RvY_09763"; transcript_id "RvY_09763.1"; Scaffold004 rebuild exon 4497621 4497788 . + . gene_id "RvY_09763"; transcript_id "RvY_09763.1"; Scaffold004 rebuild transcript 4498129 4498827 . - . gene_id "RvY_09764"; transcript_id "RvY_09764.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4498129 4498243 . - . gene_id "RvY_09764"; transcript_id "RvY_09764.1"; Scaffold004 rebuild exon 4498333 4498469 . - . gene_id "RvY_09764"; transcript_id "RvY_09764.1"; Scaffold004 rebuild exon 4498556 4498651 . - . gene_id "RvY_09764"; transcript_id "RvY_09764.1"; Scaffold004 rebuild exon 4498768 4498827 . - . gene_id "RvY_09764"; transcript_id "RvY_09764.1"; Scaffold004 rebuild transcript 4501854 4506357 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain|[PAN_4] PAN domain|[PAN_1] PAN domain"; Scaffold004 rebuild exon 4501854 4501926 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4502004 4502291 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4502421 4502690 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4502753 4503022 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4503295 4503631 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4503701 4503897 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4504274 4504482 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4504648 4504702 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4504811 4505132 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4505330 4505578 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4505687 4506024 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild exon 4506089 4506357 . + . gene_id "RvY_09765"; transcript_id "RvY_09765.1"; Scaffold004 rebuild transcript 4506085 4506360 . - . gene_id "RvY_09766"; transcript_id "RvY_09766.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4506085 4506360 . - . gene_id "RvY_09766"; transcript_id "RvY_09766.1"; Scaffold004 rebuild transcript 4507007 4511539 . + . gene_id "RvY_09767"; transcript_id "RvY_09767.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4507007 4507357 . + . gene_id "RvY_09767"; transcript_id "RvY_09767.1"; Scaffold004 rebuild exon 4507461 4507676 . + . gene_id "RvY_09767"; transcript_id "RvY_09767.1"; Scaffold004 rebuild exon 4508935 4509094 . + . gene_id "RvY_09767"; transcript_id "RvY_09767.1"; Scaffold004 rebuild exon 4510938 4511137 . + . gene_id "RvY_09767"; transcript_id "RvY_09767.1"; Scaffold004 rebuild exon 4511327 4511539 . + . gene_id "RvY_09767"; transcript_id "RvY_09767.1"; Scaffold004 rebuild transcript 4512949 4519854 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; gene_name "AUB"; annotation "aubergine"; Pfam "[Piwi]|[PAZ]"; CDD "Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; KO "K02156"; similar_genes "PIWL1_DANRE(e-value:5.3e-12;bit-score:69.0)"; Scaffold004 rebuild exon 4512949 4513034 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4513110 4513288 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4513389 4513517 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4513584 4513668 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4513862 4513930 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4514783 4514960 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4515160 4515296 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4515428 4515503 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4515589 4515664 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4515778 4515968 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4516066 4516180 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4516512 4516759 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4517629 4517746 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4517817 4517939 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4518032 4518121 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4518266 4518355 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4518440 4518567 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4518738 4518976 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4519203 4519360 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4519442 4519521 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild exon 4519651 4519854 . - . gene_id "RvY_09768"; transcript_id "RvY_09768.1"; Scaffold004 rebuild transcript 4519911 4520406 . - . gene_id "RvY_09769"; transcript_id "RvY_09769.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4519911 4520005 . - . gene_id "RvY_09769"; transcript_id "RvY_09769.1"; Scaffold004 rebuild exon 4520193 4520406 . - . gene_id "RvY_09769"; transcript_id "RvY_09769.1"; Scaffold004 rebuild transcript 4522827 4524483 . + . gene_id "RvY_09770"; transcript_id "RvY_09770.1"; annotation "hypothetical protein."; Pfam "[Radial_spoke] Radial spokehead-like protein"; Scaffold004 rebuild exon 4522827 4523026 . + . gene_id "RvY_09770"; transcript_id "RvY_09770.1"; Scaffold004 rebuild exon 4523090 4523246 . + . gene_id "RvY_09770"; transcript_id "RvY_09770.1"; Scaffold004 rebuild exon 4523328 4523457 . + . gene_id "RvY_09770"; transcript_id "RvY_09770.1"; Scaffold004 rebuild exon 4523602 4523769 . + . gene_id "RvY_09770"; transcript_id "RvY_09770.1"; Scaffold004 rebuild exon 4524035 4524483 . + . gene_id "RvY_09770"; transcript_id "RvY_09770.1"; Scaffold004 rebuild transcript 4526706 4531563 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; similar_genes "SGEF_HUMAN(e-value:3.9e-06;bit-score:49.0)"; Scaffold004 rebuild exon 4526706 4527260 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4527501 4528377 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4528514 4528627 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4529135 4529571 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4529631 4529711 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4529919 4530095 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4530169 4530200 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4530287 4530350 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4530440 4530543 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4530604 4530657 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4530741 4530959 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4531139 4531417 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild exon 4531482 4531563 . + . gene_id "RvY_09771"; transcript_id "RvY_09771.1"; Scaffold004 rebuild transcript 4531149 4531358 . - . gene_id "RvY_09772"; transcript_id "RvY_09772.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4531149 4531358 . - . gene_id "RvY_09772"; transcript_id "RvY_09772.1"; Scaffold004 rebuild transcript 4532335 4532634 . + . gene_id "RvY_09773"; transcript_id "RvY_09773.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4532335 4532634 . + . gene_id "RvY_09773"; transcript_id "RvY_09773.1"; Scaffold004 rebuild transcript 4533272 4536494 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; gene_name "SLC1A2"; annotation "Excitatory amino acid transporter"; Pfam "[SDF] Sodium:dicarboxylate symporter family"; KO "K05613"; similar_genes "EAA1_CAEEL(e-value:9.8e-92;bit-score:334.0)"; Scaffold004 rebuild exon 4533272 4533650 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4533726 4533790 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4533869 4533938 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4534019 4534067 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4534135 4534197 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4534263 4534345 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4534582 4534721 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4534779 4534999 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4535062 4535219 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4535704 4535911 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4536035 4536236 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild exon 4536372 4536494 . - . gene_id "RvY_09774"; transcript_id "RvY_09774.1"; Scaffold004 rebuild transcript 4540020 4540193 . + . gene_id "RvY_09775"; transcript_id "RvY_09775.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4540020 4540193 . + . gene_id "RvY_09775"; transcript_id "RvY_09775.1"; Scaffold004 rebuild transcript 4540566 4541987 . + . gene_id "RvY_09776"; transcript_id "RvY_09776.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4540566 4540715 . + . gene_id "RvY_09776"; transcript_id "RvY_09776.1"; Scaffold004 rebuild exon 4541464 4541538 . + . gene_id "RvY_09776"; transcript_id "RvY_09776.1"; Scaffold004 rebuild exon 4541624 4541767 . + . gene_id "RvY_09776"; transcript_id "RvY_09776.1"; Scaffold004 rebuild exon 4541877 4541987 . + . gene_id "RvY_09776"; transcript_id "RvY_09776.1"; Scaffold004 rebuild transcript 4542032 4542241 . - . gene_id "RvY_09777"; transcript_id "RvY_09777.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4542032 4542241 . - . gene_id "RvY_09777"; transcript_id "RvY_09777.1"; Scaffold004 rebuild transcript 4543840 4547762 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4543840 4543896 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4544063 4544413 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4544477 4545230 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4545312 4545472 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4545941 4546302 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4546385 4546444 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4546507 4546566 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4546638 4546751 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4546871 4547108 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild exon 4547439 4547762 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.1"; Scaffold004 rebuild transcript 4543840 4546570 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4543840 4543896 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild exon 4544063 4544413 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild exon 4544477 4545230 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild exon 4545312 4545472 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild exon 4545941 4546302 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild exon 4546385 4546444 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild exon 4546507 4546570 . + . gene_id "RvY_09778"; transcript_id "RvY_09778.2"; Scaffold004 rebuild transcript 4548480 4552317 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; gene_name "STKc_PKB"; annotation "(1)Serine/threonine-protein kinase akt-1(2)Serine/threonine-protein kinase akt-2"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis."; EC "EC2.7.11.1"; similar_genes "(1)AKT1_CAEEL(e-value:1.7e-59;bit-score:227.0)(2)AKT2_CAEEL(e-value:3.4e-58;bit-score:222.0)"; Scaffold004 rebuild exon 4548480 4548633 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4548726 4548847 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4549217 4549309 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4549397 4549525 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4549639 4549830 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4550659 4550775 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4551006 4551092 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4551175 4551289 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4551875 4551986 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4552061 4552183 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild exon 4552242 4552317 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.1"; Scaffold004 rebuild transcript 4549154 4552317 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; gene_name "STKc_PKB"; annotation "(1)Serine/threonine-protein kinase akt-1(2)Serine/threonine-protein kinase akt-2"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis."; EC "EC2.7.11.1"; similar_genes "(1)AKT1_CAEEL(e-value:1.7e-59;bit-score:227.0)(2)AKT2_CAEEL(e-value:3.4e-58;bit-score:222.0)"; Scaffold004 rebuild exon 4549154 4549309 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4549397 4549525 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4549639 4549830 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4550659 4550775 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4551006 4551092 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4551175 4551289 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4551875 4551986 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4552061 4552183 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild exon 4552242 4552317 . - . gene_id "RvY_09779"; transcript_id "RvY_09779.2"; Scaffold004 rebuild transcript 4553691 4556666 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4553691 4553749 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4553832 4554113 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4554337 4554504 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4554591 4554710 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4554778 4554987 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4555119 4555529 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4555596 4555781 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4555843 4556053 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild exon 4556310 4556666 . - . gene_id "RvY_09780"; transcript_id "RvY_09780.1"; Scaffold004 rebuild transcript 4556913 4557284 . - . gene_id "RvY_09781"; transcript_id "RvY_09781.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4556913 4557284 . - . gene_id "RvY_09781"; transcript_id "RvY_09781.1"; Scaffold004 rebuild transcript 4557487 4558387 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.1"; gene_name "msrB"; annotation "putative Peptide methionine sulfoxide reductase msrB"; Pfam "[SelR]"; CDD "methionine sulfoxide reductase B; Provisional"; EC "EC1.8.4.12"; KO "K07305"; similar_genes "MSRB_HAHCH(e-value:1.9e-37;bit-score:153.0)"; Scaffold004 rebuild exon 4557487 4557674 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.1"; Scaffold004 rebuild exon 4557765 4557812 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.1"; Scaffold004 rebuild exon 4557881 4558005 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.1"; Scaffold004 rebuild exon 4558254 4558387 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.1"; Scaffold004 rebuild transcript 4557403 4558387 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.2"; gene_name "msrB"; annotation "putative Peptide methionine sulfoxide reductase msrB"; Pfam "[SelR]"; CDD "methionine sulfoxide reductase B; Provisional"; EC "EC1.8.4.12"; KO "K07305"; similar_genes "MSRB_HAHCH(e-value:1.9e-37;bit-score:153.0)"; Scaffold004 rebuild exon 4557403 4557432 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.2"; Scaffold004 rebuild exon 4557592 4557674 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.2"; Scaffold004 rebuild exon 4557765 4557812 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.2"; Scaffold004 rebuild exon 4557881 4558005 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.2"; Scaffold004 rebuild exon 4558254 4558387 . + . gene_id "RvY_09782"; transcript_id "RvY_09782.2"; Scaffold004 rebuild transcript 4558677 4565556 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain"; Scaffold004 rebuild exon 4558677 4559056 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4559152 4559346 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4559452 4559595 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4559684 4559827 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4559911 4560084 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4560285 4560414 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4561849 4562096 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild exon 4565451 4565556 . - . gene_id "RvY_09783"; transcript_id "RvY_09783.1"; Scaffold004 rebuild transcript 4567433 4572523 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; gene_name "6-Mar"; annotation "putative E3 ubiquitin-protein ligase MARCH6"; Pfam "[RINGv] RING-variant domain"; CDD "Protein involved in mRNA turnover and stability [RNA processing and modification]"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10661"; similar_genes "MARH6_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold004 rebuild exon 4567433 4567595 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4567946 4568232 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4568296 4568391 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4568601 4569274 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4569525 4569986 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4570329 4570611 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4570673 4570990 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4571062 4571341 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4571471 4571540 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4571637 4571802 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4571870 4571926 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4572098 4572146 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild exon 4572414 4572523 . - . gene_id "RvY_09784"; transcript_id "RvY_09784.1"; Scaffold004 rebuild transcript 4573201 4573494 . + . gene_id "RvY_09785"; transcript_id "RvY_09785.1"; annotation "hypothetical protein."; EC "EC3.1.-.-"; similar_genes "RNKB_CERCA(e-value:1.5e-07;bit-score:54.0)"; Scaffold004 rebuild exon 4573201 4573494 . + . gene_id "RvY_09785"; transcript_id "RvY_09785.1"; Scaffold004 rebuild transcript 4574743 4575600 . - . gene_id "RvY_09786"; transcript_id "RvY_09786.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold004 rebuild exon 4574743 4575600 . - . gene_id "RvY_09786"; transcript_id "RvY_09786.1"; Scaffold004 rebuild transcript 4577028 4577899 . + . gene_id "RvY_09787"; transcript_id "RvY_09787.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4577028 4577072 . + . gene_id "RvY_09787"; transcript_id "RvY_09787.1"; Scaffold004 rebuild exon 4577759 4577899 . + . gene_id "RvY_09787"; transcript_id "RvY_09787.1"; Scaffold004 rebuild transcript 4579033 4579314 . - . gene_id "RvY_09788"; transcript_id "RvY_09788.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4579033 4579314 . - . gene_id "RvY_09788"; transcript_id "RvY_09788.1"; Scaffold004 rebuild transcript 4580981 4585660 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; annotation "Regulator of G-protein signaling 7"; Pfam "[DEP] Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)|[G-gamma] GGL domain|[RGS] Regulator of G protein signaling domain"; similar_genes "(1,2)RGS7_BOVIN(e-value:9.7e-90;bit-score:327.0)(3)RGS7_BOVIN(e-value:3.0e-97;bit-score:352.0)"; Scaffold004 rebuild exon 4580981 4581370 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4582325 4582421 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4582594 4582644 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4583150 4583256 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4583309 4583360 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4583431 4583572 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4583722 4583809 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4584036 4584250 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4584330 4584443 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4584708 4584836 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4584902 4584976 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4585040 4585151 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4585217 4585309 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild exon 4585574 4585660 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.1"; Scaffold004 rebuild transcript 4580981 4585660 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; annotation "Regulator of G-protein signaling 7"; Pfam "[DEP] Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)|[G-gamma] GGL domain|[RGS] Regulator of G protein signaling domain"; similar_genes "(1,2)RGS7_BOVIN(e-value:9.7e-90;bit-score:327.0)(3)RGS7_BOVIN(e-value:3.0e-97;bit-score:352.0)"; Scaffold004 rebuild exon 4580981 4581370 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4582325 4582421 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4582594 4582644 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4583150 4583256 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4583309 4583360 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4583431 4583572 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4583722 4583809 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4584036 4584250 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4584330 4584437 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4584708 4584836 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4584902 4584976 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4585040 4585151 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4585217 4585309 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild exon 4585574 4585660 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.2"; Scaffold004 rebuild transcript 4580981 4585660 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; annotation "Regulator of G-protein signaling 7"; Pfam "[DEP] Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)|[G-gamma] GGL domain|[RGS] Regulator of G protein signaling domain"; similar_genes "(1,2)RGS7_BOVIN(e-value:9.7e-90;bit-score:327.0)(3)RGS7_BOVIN(e-value:3.0e-97;bit-score:352.0)"; Scaffold004 rebuild exon 4580981 4581370 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4582325 4582421 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4582594 4582644 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4583150 4583256 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4583309 4583360 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4583431 4583572 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4583722 4583803 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4584036 4584250 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4584330 4584443 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4584708 4584836 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4584902 4584976 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4585040 4585151 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4585217 4585309 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild exon 4585574 4585660 . + . gene_id "RvY_09789"; transcript_id "RvY_09789.3"; Scaffold004 rebuild transcript 4588047 4590098 . + . gene_id "RvY_09790"; transcript_id "RvY_09790.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4588047 4588352 . + . gene_id "RvY_09790"; transcript_id "RvY_09790.1"; Scaffold004 rebuild exon 4588470 4590098 . + . gene_id "RvY_09790"; transcript_id "RvY_09790.1"; Scaffold004 rebuild transcript 4590251 4590799 . - . gene_id "RvY_09791"; transcript_id "RvY_09791.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4590251 4590498 . - . gene_id "RvY_09791"; transcript_id "RvY_09791.1"; Scaffold004 rebuild exon 4590700 4590799 . - . gene_id "RvY_09791"; transcript_id "RvY_09791.1"; Scaffold004 rebuild transcript 4591241 4605003 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin_2] Cadherin-like|[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold004 rebuild exon 4591241 4591315 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4591884 4592018 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4592080 4592196 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4592258 4592473 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4592686 4592926 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4592983 4593041 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4593100 4593228 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4593682 4593769 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4593851 4594185 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4594373 4594463 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4594624 4595126 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4595396 4595576 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4595653 4595928 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4596020 4596221 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4596285 4596412 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4596490 4596625 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4596836 4597299 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4597469 4597738 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4597820 4598137 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4598208 4598380 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4598445 4598532 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4598605 4598831 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4599072 4599557 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4599685 4599904 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4599964 4600034 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4600102 4600224 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4600291 4600390 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4600466 4600798 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4601004 4601321 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4601398 4601694 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4601873 4601937 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4602005 4602311 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4602598 4602957 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4603027 4603223 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4603307 4603394 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4603460 4603539 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4603608 4604333 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild exon 4604881 4605003 . - . gene_id "RvY_09792"; transcript_id "RvY_09792.1"; Scaffold004 rebuild transcript 4607803 4608824 . + . gene_id "RvY_09793"; transcript_id "RvY_09793.1"; gene_name "GNG12"; annotation "guanine nucleotide binding protein (G protein), gamma 12"; Pfam "[G-gamma] GGL domain"; CDD "G protein gamma subunit-like motifs."; KO "K04347"; similar_genes "GBG7_HUMAN(e-value:1.2e-09;bit-score:61.0)"; Scaffold004 rebuild exon 4607803 4607894 . + . gene_id "RvY_09793"; transcript_id "RvY_09793.1"; Scaffold004 rebuild exon 4608719 4608824 . + . gene_id "RvY_09793"; transcript_id "RvY_09793.1"; Scaffold004 rebuild transcript 4608944 4609366 . - . gene_id "RvY_09794"; transcript_id "RvY_09794.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4608944 4609366 . - . gene_id "RvY_09794"; transcript_id "RvY_09794.1"; Scaffold004 rebuild transcript 4609474 4612613 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; gene_name "IK"; annotation "IK cytokine"; Pfam "[RED_C] RED-like protein C-terminal region|[RED_N] RED-like protein N-terminal region"; CDD "RED-like protein N-terminal region. This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently."; KO "K13109"; similar_genes "RED_HUMAN(e-value:2.4e-16;bit-score:83.0)"; Scaffold004 rebuild exon 4609474 4609510 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4609893 4610039 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4610129 4610217 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4610278 4610344 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4610408 4610541 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4610612 4610677 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4610760 4610871 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4610937 4611003 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4611087 4611427 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4611514 4611626 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4611705 4611819 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4611890 4611987 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4612068 4612134 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4612209 4612259 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4612438 4612536 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild exon 4612600 4612613 . - . gene_id "RvY_09795"; transcript_id "RvY_09795.1"; Scaffold004 rebuild transcript 4613381 4614028 . + . gene_id "RvY_09796"; transcript_id "RvY_09796.1"; gene_name "K06975"; annotation "Unclassified; Poorly Characterized; General function prediction only"; CDD "Predicted acetyltransferase [General function prediction only]"; KO "K06975"; Scaffold004 rebuild exon 4613381 4613409 . + . gene_id "RvY_09796"; transcript_id "RvY_09796.1"; Scaffold004 rebuild exon 4613479 4613740 . + . gene_id "RvY_09796"; transcript_id "RvY_09796.1"; Scaffold004 rebuild exon 4613826 4613867 . + . gene_id "RvY_09796"; transcript_id "RvY_09796.1"; Scaffold004 rebuild exon 4613939 4614028 . + . gene_id "RvY_09796"; transcript_id "RvY_09796.1"; Scaffold004 rebuild transcript 4614309 4616505 . - . gene_id "RvY_09797"; transcript_id "RvY_09797.1"; gene_name "PDIA1"; annotation "putative Protein disulfide-isomerase 2"; Pfam "[AhpC-TSA] AhpC/TSA family|[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_7] Thioredoxin-like|[Redoxin]|[Thioredoxin_8] Thioredoxin-like|[Thioredoxin]"; CDD "protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs)."; EC "EC5.3.4.1"; KO "K09580"; similar_genes "PDI2_CAEEL(e-value:1.8e-48;bit-score:190.0)"; Scaffold004 rebuild exon 4614309 4614784 . - . gene_id "RvY_09797"; transcript_id "RvY_09797.1"; Scaffold004 rebuild exon 4615061 4615762 . - . gene_id "RvY_09797"; transcript_id "RvY_09797.1"; Scaffold004 rebuild exon 4616160 4616505 . - . gene_id "RvY_09797"; transcript_id "RvY_09797.1"; Scaffold004 rebuild transcript 4617154 4618858 . + . gene_id "RvY_09798"; transcript_id "RvY_09798.1"; gene_name "K00109"; annotation "L-2-hydroxyglutarate dehydrogenase, mitochondrial"; Pfam "[DAO] FAD dependent oxidoreductase"; CDD "hypothetical protein; Provisional"; EC "EC1.1.99.2"; KO "K00109"; similar_genes "L2HDH_NEMVE(e-value:1.2e-68;bit-score:257.0)"; Scaffold004 rebuild exon 4617154 4617463 . + . gene_id "RvY_09798"; transcript_id "RvY_09798.1"; Scaffold004 rebuild exon 4617746 4618159 . + . gene_id "RvY_09798"; transcript_id "RvY_09798.1"; Scaffold004 rebuild exon 4618224 4618858 . + . gene_id "RvY_09798"; transcript_id "RvY_09798.1"; Scaffold004 rebuild transcript 4619358 4620788 . + . gene_id "RvY_09799"; transcript_id "RvY_09799.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4619358 4620224 . + . gene_id "RvY_09799"; transcript_id "RvY_09799.1"; Scaffold004 rebuild exon 4620432 4620788 . + . gene_id "RvY_09799"; transcript_id "RvY_09799.1"; Scaffold004 rebuild transcript 4620974 4622622 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; gene_name "PSMA1"; annotation "Proteasome subunit alpha type-1"; Pfam "[Proteasome_A_N] Proteasome subunit A N-terminal signature|[Proteasome] Proteasome subunit"; CDD "proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02725"; similar_genes "PSA1_HUMAN(e-value:6.1e-66;bit-score:248.0)"; Scaffold004 rebuild exon 4620974 4621090 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4621179 4621229 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4621294 4621448 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4621527 4621656 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4621720 4621790 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4621850 4621938 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4622141 4622244 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4622323 4622424 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4622486 4622530 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild exon 4622620 4622622 . - . gene_id "RvY_09800"; transcript_id "RvY_09800.1"; Scaffold004 rebuild transcript 4623650 4627097 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; annotation "Rhomboid family member 1"; Pfam "[Rhomboid] Rhomboid family"; similar_genes "RHDF1_DANRE(e-value:8.3e-70;bit-score:261.0)"; Scaffold004 rebuild exon 4623650 4623988 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4624043 4624135 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4624233 4624386 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4624481 4624695 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4624887 4625099 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4625169 4625330 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4625392 4625466 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4625532 4625643 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4625737 4626131 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4626288 4626675 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild exon 4626976 4627097 . - . gene_id "RvY_09801"; transcript_id "RvY_09801.1"; Scaffold004 rebuild transcript 4628071 4629344 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; gene_name "RAB1A"; annotation "Ras-related protein ORAB-1"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07874"; similar_genes "RAB1_DISOM(e-value:6.5e-91;bit-score:331.0)"; Scaffold004 rebuild exon 4628071 4628084 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild exon 4628254 4628326 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild exon 4628391 4628438 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild exon 4628509 4628556 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild exon 4628649 4628744 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild exon 4628813 4628944 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild exon 4629147 4629344 . + . gene_id "RvY_09802"; transcript_id "RvY_09802.1"; Scaffold004 rebuild transcript 4630323 4632994 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4630323 4630463 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; Scaffold004 rebuild exon 4630617 4630702 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; Scaffold004 rebuild exon 4630813 4631627 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; Scaffold004 rebuild exon 4631897 4632242 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; Scaffold004 rebuild exon 4632302 4632549 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; Scaffold004 rebuild exon 4632672 4632994 . + . gene_id "RvY_09803"; transcript_id "RvY_09803.1"; Scaffold004 rebuild transcript 4634396 4636652 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold004 rebuild exon 4634396 4634773 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; Scaffold004 rebuild exon 4634888 4635026 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; Scaffold004 rebuild exon 4635108 4635181 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; Scaffold004 rebuild exon 4635270 4635316 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; Scaffold004 rebuild exon 4635416 4636099 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; Scaffold004 rebuild exon 4636328 4636652 . + . gene_id "RvY_09804"; transcript_id "RvY_09804.1"; Scaffold004 rebuild transcript 4636938 4638418 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; gene_name "K01090"; annotation "Serine/threonine-protein phosphatase dullard homolog"; Pfam "[NIF] NLI interacting factor-like phosphatase"; CDD "Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the pfam03031."; EC "EC3.1.3.16"; KO "K01090"; similar_genes "DULRD_CAEEL(e-value:2.5e-56;bit-score:216.0)"; Scaffold004 rebuild exon 4636938 4636955 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild exon 4637209 4637372 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild exon 4637446 4637557 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild exon 4637622 4637738 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild exon 4637802 4637995 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild exon 4638079 4638145 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild exon 4638233 4638418 . - . gene_id "RvY_09805"; transcript_id "RvY_09805.1"; Scaffold004 rebuild transcript 4638475 4638690 . + . gene_id "RvY_09806"; transcript_id "RvY_09806.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4638475 4638690 . + . gene_id "RvY_09806"; transcript_id "RvY_09806.1"; Scaffold004 rebuild transcript 4639707 4648718 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold004 rebuild exon 4639707 4639725 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4641742 4642047 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4642317 4642413 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4642519 4642585 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4642665 4642847 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4642973 4643182 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4643293 4643493 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4643555 4643711 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4643902 4644324 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4644607 4645122 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4645475 4645858 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4645920 4646200 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4646419 4646899 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4647087 4647236 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4647337 4648424 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild exon 4648599 4648718 . + . gene_id "RvY_09807"; transcript_id "RvY_09807.1"; Scaffold004 rebuild transcript 4649259 4649609 . + . gene_id "RvY_09808"; transcript_id "RvY_09808.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4649259 4649609 . + . gene_id "RvY_09808"; transcript_id "RvY_09808.1"; Scaffold004 rebuild transcript 4650119 4651338 . + . gene_id "RvY_09809"; transcript_id "RvY_09809.1"; gene_name "pfdB"; annotation "prefoldin beta subunit"; Pfam "[Prefoldin_2] Prefoldin subunit"; CDD "Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer."; KO "K04798"; similar_genes "PFD6_HUMAN(e-value:1.8e-10;bit-score:64.0)"; Scaffold004 rebuild exon 4650119 4650206 . + . gene_id "RvY_09809"; transcript_id "RvY_09809.1"; Scaffold004 rebuild exon 4650298 4650368 . + . gene_id "RvY_09809"; transcript_id "RvY_09809.1"; Scaffold004 rebuild exon 4650436 4650560 . + . gene_id "RvY_09809"; transcript_id "RvY_09809.1"; Scaffold004 rebuild exon 4651209 4651338 . + . gene_id "RvY_09809"; transcript_id "RvY_09809.1"; Scaffold004 rebuild transcript 4651718 4663273 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; gene_name "MYO9"; annotation "putative Myosin-IXa"; Pfam "[Myosin_head] Myosin head (motor domain)|[RhoGAP]|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[IQ] IQ calmodulin-binding motif"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; KO "K10360"; similar_genes "MYO9A_HUMAN(e-value:5.4e-33;bit-score:139.0)"; Scaffold004 rebuild exon 4651718 4651901 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4651969 4652211 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4652276 4652407 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4652465 4652570 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4652638 4653214 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4653559 4654259 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4654443 4654796 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4655077 4655582 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4655965 4656459 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4656732 4657219 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4657426 4657689 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4657754 4657888 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4657957 4658067 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4658883 4658972 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4659045 4659125 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4659212 4659266 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4659368 4659568 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4659679 4659741 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4660377 4660471 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4661859 4661989 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4662065 4662712 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild exon 4663039 4663273 . - . gene_id "RvY_09810"; transcript_id "RvY_09810.1"; Scaffold004 rebuild transcript 4659648 4659842 . + . gene_id "RvY_09811"; transcript_id "RvY_09811.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4659648 4659842 . + . gene_id "RvY_09811"; transcript_id "RvY_09811.1"; Scaffold004 rebuild transcript 4665740 4665982 . + . gene_id "RvY_09812"; transcript_id "RvY_09812.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4665740 4665982 . + . gene_id "RvY_09812"; transcript_id "RvY_09812.1"; Scaffold004 rebuild transcript 4666789 4666977 . - . gene_id "RvY_09813"; transcript_id "RvY_09813.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4666789 4666977 . - . gene_id "RvY_09813"; transcript_id "RvY_09813.1"; Scaffold004 rebuild transcript 4667858 4670167 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; annotation "hypothetical protein."; Pfam "[AdoMet_MTase] Predicted AdoMet-dependent methyltransferase"; EC "EC2.1.1.n2"; KO "K15447"; similar_genes "TRM44_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold004 rebuild exon 4667858 4668179 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild exon 4668248 4668642 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild exon 4668729 4668797 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild exon 4668882 4668998 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild exon 4669061 4669204 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild exon 4669273 4669304 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild exon 4669378 4670167 . + . gene_id "RvY_09814"; transcript_id "RvY_09814.1"; Scaffold004 rebuild transcript 4670264 4670854 . - . gene_id "RvY_09815"; transcript_id "RvY_09815.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4670264 4670854 . - . gene_id "RvY_09815"; transcript_id "RvY_09815.1"; Scaffold004 rebuild transcript 4670264 4670854 . - . gene_id "RvY_09815"; transcript_id "RvY_09815.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4670264 4670634 . - . gene_id "RvY_09815"; transcript_id "RvY_09815.2"; Scaffold004 rebuild exon 4670707 4670854 . - . gene_id "RvY_09815"; transcript_id "RvY_09815.2"; Scaffold004 rebuild transcript 4672720 4673574 . + . gene_id "RvY_09816"; transcript_id "RvY_09816.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "HM19_CAEEL(e-value:9.7e-20;bit-score:95.0)"; Scaffold004 rebuild exon 4672720 4672990 . + . gene_id "RvY_09816"; transcript_id "RvY_09816.1"; Scaffold004 rebuild exon 4673093 4673270 . + . gene_id "RvY_09816"; transcript_id "RvY_09816.1"; Scaffold004 rebuild exon 4673340 4673574 . + . gene_id "RvY_09816"; transcript_id "RvY_09816.1"; Scaffold004 rebuild transcript 4673734 4674804 . - . gene_id "RvY_09817"; transcript_id "RvY_09817.1"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; Scaffold004 rebuild exon 4673734 4674457 . - . gene_id "RvY_09817"; transcript_id "RvY_09817.1"; Scaffold004 rebuild exon 4674646 4674722 . - . gene_id "RvY_09817"; transcript_id "RvY_09817.1"; Scaffold004 rebuild exon 4674802 4674804 . - . gene_id "RvY_09817"; transcript_id "RvY_09817.1"; Scaffold004 rebuild transcript 4675233 4675713 . - . gene_id "RvY_09818"; transcript_id "RvY_09818.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4675233 4675504 . - . gene_id "RvY_09818"; transcript_id "RvY_09818.1"; Scaffold004 rebuild exon 4675626 4675713 . - . gene_id "RvY_09818"; transcript_id "RvY_09818.1"; Scaffold004 rebuild transcript 4675233 4675713 . - . gene_id "RvY_09818"; transcript_id "RvY_09818.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4675233 4675504 . - . gene_id "RvY_09818"; transcript_id "RvY_09818.2"; Scaffold004 rebuild exon 4675638 4675713 . - . gene_id "RvY_09818"; transcript_id "RvY_09818.2"; Scaffold004 rebuild transcript 4676293 4676661 . - . gene_id "RvY_09819"; transcript_id "RvY_09819.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4676293 4676661 . - . gene_id "RvY_09819"; transcript_id "RvY_09819.1"; Scaffold004 rebuild transcript 4676393 4678091 . + . gene_id "RvY_09820"; transcript_id "RvY_09820.1"; gene_name "CDC_Septin"; annotation "hypothetical protein."; Pfam "[Septin]"; CDD "CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities."; Scaffold004 rebuild exon 4676393 4676995 . + . gene_id "RvY_09820"; transcript_id "RvY_09820.1"; Scaffold004 rebuild exon 4677149 4677544 . + . gene_id "RvY_09820"; transcript_id "RvY_09820.1"; Scaffold004 rebuild exon 4677801 4678091 . + . gene_id "RvY_09820"; transcript_id "RvY_09820.1"; Scaffold004 rebuild transcript 4678525 4680027 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; annotation "putative Homeobox protein extradenticle"; Pfam "[Homeobox_KN] Homeobox KN domain|[PBC]|[Homeobox]"; similar_genes "EXD_DROME(e-value:6.9e-46;bit-score:182.0)"; Scaffold004 rebuild exon 4678525 4678583 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4678675 4678690 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4678789 4678826 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4678934 4678956 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4679041 4679115 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4679180 4679370 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4679444 4679706 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4679774 4679847 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild exon 4679963 4680027 . - . gene_id "RvY_09821"; transcript_id "RvY_09821.1"; Scaffold004 rebuild transcript 4680867 4683477 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; gene_name "PBX"; annotation "(1)Homeobox protein extradenticle(2)Pre-B-cell leukemia transcription factor 2"; Pfam "[Homeobox_KN] Homeobox KN domain|[PBC]|[Homeobox]"; KO "K09355"; similar_genes "(1)EXD_DROME(e-value:1.1e-82;bit-score:304.0)(2)PBX2_XENTR(e-value:9.0e-80;bit-score:294.0)"; Scaffold004 rebuild exon 4680867 4680906 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4680972 4681045 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4681112 4681136 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4681220 4681330 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4681392 4681582 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4681665 4681849 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4682031 4682111 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4682904 4682977 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild exon 4683260 4683477 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.1"; Scaffold004 rebuild transcript 4680968 4683477 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; gene_name "PBX"; annotation "(1)Homeobox protein extradenticle(2)Pre-B-cell leukemia transcription factor 2"; Pfam "[Homeobox_KN] Homeobox KN domain|[PBC]|[Homeobox]"; KO "K09355"; similar_genes "(1)EXD_DROME(e-value:1.1e-82;bit-score:304.0)(2)PBX2_XENTR(e-value:9.0e-80;bit-score:294.0)"; Scaffold004 rebuild exon 4680968 4681045 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4681112 4681136 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4681220 4681330 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4681392 4681582 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4681665 4681849 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4682031 4682111 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4682904 4682977 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild exon 4683260 4683477 . - . gene_id "RvY_09822"; transcript_id "RvY_09822.2"; Scaffold004 rebuild transcript 4685056 4686469 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; gene_name "PSMA4"; annotation "Proteasome subunit alpha type-4"; Pfam "[Proteasome_A_N] Proteasome subunit A N-terminal signature|[Proteasome] Proteasome subunit"; CDD "proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02728"; similar_genes "PSA4_RAT(e-value:9.0e-80;bit-score:294.0)"; Scaffold004 rebuild exon 4685056 4685058 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4685120 4685162 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4685241 4685406 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4685483 4685560 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4685697 4685785 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4685879 4686009 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4686121 4686244 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild exon 4686303 4686469 . + . gene_id "RvY_09823"; transcript_id "RvY_09823.1"; Scaffold004 rebuild transcript 4686816 4687386 . - . gene_id "RvY_09824"; transcript_id "RvY_09824.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4686816 4687139 . - . gene_id "RvY_09824"; transcript_id "RvY_09824.1"; Scaffold004 rebuild exon 4687354 4687386 . - . gene_id "RvY_09824"; transcript_id "RvY_09824.1"; Scaffold004 rebuild transcript 4687944 4688267 . + . gene_id "RvY_09825"; transcript_id "RvY_09825.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4687944 4688267 . + . gene_id "RvY_09825"; transcript_id "RvY_09825.1"; Scaffold004 rebuild transcript 4692089 4694188 . + . gene_id "RvY_09826"; transcript_id "RvY_09826.1"; gene_name "PHC1"; annotation "polyhomeotic-like protein 1"; Pfam "[SAM_1] SAM domain (Sterile alpha motif)"; KO "K11456"; Scaffold004 rebuild exon 4692089 4693672 . + . gene_id "RvY_09826"; transcript_id "RvY_09826.1"; Scaffold004 rebuild exon 4693744 4693828 . + . gene_id "RvY_09826"; transcript_id "RvY_09826.1"; Scaffold004 rebuild exon 4694025 4694188 . + . gene_id "RvY_09826"; transcript_id "RvY_09826.1"; Scaffold004 rebuild transcript 4694950 4695857 . - . gene_id "RvY_09827"; transcript_id "RvY_09827.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4694950 4695109 . - . gene_id "RvY_09827"; transcript_id "RvY_09827.1"; Scaffold004 rebuild exon 4695128 4695288 . - . gene_id "RvY_09827"; transcript_id "RvY_09827.1"; Scaffold004 rebuild exon 4695456 4695687 . - . gene_id "RvY_09827"; transcript_id "RvY_09827.1"; Scaffold004 rebuild exon 4695754 4695857 . - . gene_id "RvY_09827"; transcript_id "RvY_09827.1"; Scaffold004 rebuild transcript 4695904 4699705 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; gene_name "PRK05648"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Reviewed"; Scaffold004 rebuild exon 4695904 4696003 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4696081 4696219 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4696291 4696592 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4696896 4697281 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4697359 4697490 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4697548 4697632 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4697699 4697820 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4698029 4698145 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4698222 4698455 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4698515 4698778 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4698930 4699034 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4699208 4699334 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild exon 4699416 4699705 . - . gene_id "RvY_09828"; transcript_id "RvY_09828.1"; Scaffold004 rebuild transcript 4701166 4701669 . - . gene_id "RvY_09829"; transcript_id "RvY_09829.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4701166 4701669 . - . gene_id "RvY_09829"; transcript_id "RvY_09829.1"; Scaffold004 rebuild transcript 4701212 4701688 . - . gene_id "RvY_09829"; transcript_id "RvY_09829.2"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4701212 4701688 . - . gene_id "RvY_09829"; transcript_id "RvY_09829.2"; Scaffold004 rebuild transcript 4702747 4716368 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; gene_name "SEMA6"; annotation "semaphorin 6"; Pfam "[Sema]"; CDD "semaphorin domain."; KO "K06842"; similar_genes "SEM1A_TRICF(e-value:1.2e-09;bit-score:61.0)"; Scaffold004 rebuild exon 4702747 4703123 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4703260 4703310 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4703635 4703747 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4703813 4704737 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4704800 4705127 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4705886 4705948 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4707218 4707263 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4707883 4707994 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild exon 4716242 4716368 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.1"; Scaffold004 rebuild transcript 4702747 4716368 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; gene_name "SEMA6"; annotation "semaphorin 6"; Pfam "[Sema]"; CDD "semaphorin domain."; KO "K06842"; similar_genes "SEM1A_TRICF(e-value:1.2e-09;bit-score:61.0)"; Scaffold004 rebuild exon 4702747 4703123 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4703635 4703747 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4703813 4704737 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4704800 4705127 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4705886 4705948 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4707218 4707263 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4707883 4707994 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild exon 4716242 4716368 . - . gene_id "RvY_09830"; transcript_id "RvY_09830.2"; Scaffold004 rebuild transcript 4718710 4718895 . - . gene_id "RvY_09831"; transcript_id "RvY_09831.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4718710 4718895 . - . gene_id "RvY_09831"; transcript_id "RvY_09831.1"; Scaffold004 rebuild transcript 4719027 4719305 . + . gene_id "RvY_09832"; transcript_id "RvY_09832.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4719027 4719305 . + . gene_id "RvY_09832"; transcript_id "RvY_09832.1"; Scaffold004 rebuild transcript 4729008 4730780 . + . gene_id "RvY_09833"; transcript_id "RvY_09833.1"; annotation "hypothetical protein."; similar_genes "SYNE2_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold004 rebuild exon 4729008 4729170 . + . gene_id "RvY_09833"; transcript_id "RvY_09833.1"; Scaffold004 rebuild exon 4729725 4729786 . + . gene_id "RvY_09833"; transcript_id "RvY_09833.1"; Scaffold004 rebuild exon 4730328 4730420 . + . gene_id "RvY_09833"; transcript_id "RvY_09833.1"; Scaffold004 rebuild exon 4730520 4730780 . + . gene_id "RvY_09833"; transcript_id "RvY_09833.1"; Scaffold004 rebuild transcript 4730851 4733113 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; annotation "hypothetical protein."; Scaffold004 rebuild exon 4730851 4730998 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild exon 4731087 4731307 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild exon 4731517 4731692 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild exon 4731771 4731915 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild exon 4731979 4732505 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild exon 4732765 4732876 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild exon 4732976 4733113 . + . gene_id "RvY_09834"; transcript_id "RvY_09834.1"; Scaffold004 rebuild transcript 4733324 4740186 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; annotation "hypothetical protein."; Pfam "[Bac_small_YrzI] Probable sporulation protein (Bac_small_yrzI)"; Scaffold004 rebuild exon 4733324 4734428 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4734504 4735064 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4735140 4735700 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4735772 4736170 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4736272 4736832 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4736908 4737147 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4737456 4738016 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4738092 4738652 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4739251 4739550 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold004 rebuild exon 4739626 4740186 . + . gene_id "RvY_09835"; transcript_id "RvY_09835.1"; Scaffold005 rebuild transcript 74 1293 . - . gene_id "RvY_09836"; transcript_id "RvY_09836.2"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR2_DROME(e-value:1.0e-06;bit-score:51.0)"; Scaffold005 rebuild exon 74 335 . - . gene_id "RvY_09836"; transcript_id "RvY_09836.2"; Scaffold005 rebuild exon 439 804 . - . gene_id "RvY_09836"; transcript_id "RvY_09836.2"; Scaffold005 rebuild exon 971 1216 . - . gene_id "RvY_09836"; transcript_id "RvY_09836.2"; Scaffold005 rebuild exon 1289 1293 . - . gene_id "RvY_09836"; transcript_id "RvY_09836.2"; Scaffold005 rebuild transcript 1563 12318 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; gene_name "FN3"; annotation "hypothetical protein."; Pfam "[Interfer-bind] Interferon-alpha/beta receptor, fibronectin type III|[fn3] Fibronectin type III domain"; CDD "Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases."; Scaffold005 rebuild exon 1563 1907 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 1986 2170 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 2255 2600 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 2789 3237 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 3328 3633 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 3809 4406 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 4478 4674 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 4768 5122 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 5221 5372 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 5597 5678 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 6037 6287 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 6640 6697 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 6768 6815 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 6991 7062 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild exon 12196 12318 . - . gene_id "RvY_09837"; transcript_id "RvY_09837.1"; Scaffold005 rebuild transcript 12843 13970 . + . gene_id "RvY_09838"; transcript_id "RvY_09838.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 12843 13068 . + . gene_id "RvY_09838"; transcript_id "RvY_09838.1"; Scaffold005 rebuild exon 13142 13403 . + . gene_id "RvY_09838"; transcript_id "RvY_09838.1"; Scaffold005 rebuild exon 13484 13970 . + . gene_id "RvY_09838"; transcript_id "RvY_09838.1"; Scaffold005 rebuild transcript 14344 15486 . + . gene_id "RvY_09839"; transcript_id "RvY_09839.1"; annotation "hypothetical protein."; Pfam "[Gly_acyl_tr_N] Aralkyl acyl-CoA:amino acid N-acyltransferase"; Scaffold005 rebuild exon 14344 14418 . + . gene_id "RvY_09839"; transcript_id "RvY_09839.1"; Scaffold005 rebuild exon 14503 14628 . + . gene_id "RvY_09839"; transcript_id "RvY_09839.1"; Scaffold005 rebuild exon 14717 14976 . + . gene_id "RvY_09839"; transcript_id "RvY_09839.1"; Scaffold005 rebuild exon 15048 15486 . + . gene_id "RvY_09839"; transcript_id "RvY_09839.1"; Scaffold005 rebuild transcript 15583 18063 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 15583 15920 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild exon 15988 16077 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild exon 16161 16350 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild exon 16455 16589 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild exon 17329 17545 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild exon 17622 17919 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild exon 18015 18063 . - . gene_id "RvY_09840"; transcript_id "RvY_09840.1"; Scaffold005 rebuild transcript 18446 19716 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; gene_name "atuD"; annotation "citronellyl-CoA dehydrogenase [EC:1.3.99.-]"; Pfam "[Acyl-CoA_dh_1] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_2] Acyl-CoA dehydrogenase, C-terminal domain|[Acyl-CoA_dh_M] Acyl-CoA dehydrogenase, middle domain"; CDD "Acyl-CoA dehydrogenase (ACAD). Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC)"; EC "EC1.3.99.-|EC1.3.99.10"; KO "K11731"; similar_genes "IVD_CAEEL(e-value:7.3e-18;bit-score:88.0)"; Scaffold005 rebuild exon 18446 18723 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; Scaffold005 rebuild exon 18809 18970 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; Scaffold005 rebuild exon 19056 19229 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; Scaffold005 rebuild exon 19309 19479 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; Scaffold005 rebuild exon 19539 19563 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; Scaffold005 rebuild exon 19633 19716 . - . gene_id "RvY_09841"; transcript_id "RvY_09841.1"; Scaffold005 rebuild transcript 19850 20470 . - . gene_id "RvY_09842"; transcript_id "RvY_09842.1"; annotation "hypothetical protein."; Pfam "[Acyl-CoA_dh_N] Acyl-CoA dehydrogenase, N-terminal domain"; Scaffold005 rebuild exon 19850 19983 . - . gene_id "RvY_09842"; transcript_id "RvY_09842.1"; Scaffold005 rebuild exon 20062 20182 . - . gene_id "RvY_09842"; transcript_id "RvY_09842.1"; Scaffold005 rebuild exon 20276 20470 . - . gene_id "RvY_09842"; transcript_id "RvY_09842.1"; Scaffold005 rebuild transcript 21016 27180 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; gene_name "HUGT"; annotation "UDP-glucose:glycoprotein glucosyltransferase 1"; Pfam "[Glyco_transf_8] Glycosyl transferase family 8|[UDP-g_GGTase] UDP-glucose:Glycoprotein Glucosyltransferase"; CDD "The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity."; EC "EC2.4.1.-"; KO "K11718"; similar_genes "UGGG1_MOUSE(e-value:9.7e-143;bit-score:503.0)"; Scaffold005 rebuild exon 21016 21518 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 21666 22192 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 22496 23147 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 23254 23594 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 23914 24791 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 24903 25318 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 25374 25602 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 25724 26608 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild exon 26836 27180 . + . gene_id "RvY_09843"; transcript_id "RvY_09843.1"; Scaffold005 rebuild transcript 27392 28353 . - . gene_id "RvY_09844"; transcript_id "RvY_09844.1"; gene_name "RP-S15e"; annotation "40S ribosomal protein S15"; Pfam "[Ribosomal_S19] Ribosomal protein S19"; CDD "40S ribosomal protein S15; Provisional"; KO "K02958"; similar_genes "RS15_XENLA(e-value:5.6e-54;bit-score:208.0)"; Scaffold005 rebuild exon 27392 27505 . - . gene_id "RvY_09844"; transcript_id "RvY_09844.1"; Scaffold005 rebuild exon 27838 27966 . - . gene_id "RvY_09844"; transcript_id "RvY_09844.1"; Scaffold005 rebuild exon 28023 28128 . - . gene_id "RvY_09844"; transcript_id "RvY_09844.1"; Scaffold005 rebuild exon 28185 28279 . - . gene_id "RvY_09844"; transcript_id "RvY_09844.1"; Scaffold005 rebuild exon 28342 28353 . - . gene_id "RvY_09844"; transcript_id "RvY_09844.1"; Scaffold005 rebuild transcript 29200 30099 . + . gene_id "RvY_09845"; transcript_id "RvY_09845.1"; gene_name "rpe"; annotation "putative Ribulose-phosphate 3-epimerase"; Pfam "[Ribul_P_3_epim] Ribulose-phosphate 3 epimerase family|[QRPTase_C] Quinolinate phosphoribosyl transferase, C-terminal domain"; CDD "D-ribulose-5-phosphate 3-epimerase; Provisional"; EC "EC5.1.3.1"; KO "K01783"; similar_genes "RPE_SCHPO(e-value:5.2e-27;bit-score:119.0)"; Scaffold005 rebuild exon 29200 29562 . + . gene_id "RvY_09845"; transcript_id "RvY_09845.1"; Scaffold005 rebuild exon 29629 29850 . + . gene_id "RvY_09845"; transcript_id "RvY_09845.1"; Scaffold005 rebuild exon 29974 30099 . + . gene_id "RvY_09845"; transcript_id "RvY_09845.1"; Scaffold005 rebuild transcript 31132 33540 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; gene_name "(1)TRHR"; annotation "(1)thyrotropin-releasing hormone receptor(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04282"; similar_genes "TRFR_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold005 rebuild exon 31132 31302 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; Scaffold005 rebuild exon 31434 31591 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; Scaffold005 rebuild exon 32070 32093 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; Scaffold005 rebuild exon 32229 32901 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; Scaffold005 rebuild exon 33246 33342 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; Scaffold005 rebuild exon 33425 33540 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.1"; Scaffold005 rebuild transcript 31132 32937 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.2"; gene_name "(1)TRHR"; annotation "(1)thyrotropin-releasing hormone receptor(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04282"; similar_genes "TRFR_HUMAN(e-value:7.9e-11;bit-score:65.0)"; Scaffold005 rebuild exon 31132 31302 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.2"; Scaffold005 rebuild exon 31434 31591 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.2"; Scaffold005 rebuild exon 32070 32093 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.2"; Scaffold005 rebuild exon 32229 32937 . + . gene_id "RvY_09846"; transcript_id "RvY_09846.2"; Scaffold005 rebuild transcript 34093 38075 . - . gene_id "RvY_09847"; transcript_id "RvY_09847.1"; gene_name "ERCC4"; annotation "putative DNA repair endonuclease XPF"; Pfam "[ERCC4]"; CDD "DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit"; EC "EC3.1.-.-"; KO "K10848"; similar_genes "XPF_DROME(e-value:8.3e-36;bit-score:148.0)"; Scaffold005 rebuild exon 34093 34633 . - . gene_id "RvY_09847"; transcript_id "RvY_09847.1"; Scaffold005 rebuild exon 35006 35383 . - . gene_id "RvY_09847"; transcript_id "RvY_09847.1"; Scaffold005 rebuild exon 35992 36888 . - . gene_id "RvY_09847"; transcript_id "RvY_09847.1"; Scaffold005 rebuild exon 37046 37642 . - . gene_id "RvY_09847"; transcript_id "RvY_09847.1"; Scaffold005 rebuild exon 37801 38075 . - . gene_id "RvY_09847"; transcript_id "RvY_09847.1"; Scaffold005 rebuild transcript 38448 41018 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; gene_name "CCT7"; annotation "T-complex protein 1 subunit eta"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin."; KO "K09499"; similar_genes "TCPH_CHICK(e-value:2.7e-219;bit-score:758.0)"; Scaffold005 rebuild exon 38448 38450 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 38526 38792 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 38949 39074 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 39156 39380 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 39457 39621 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 39719 40005 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 40123 40463 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild exon 40792 41018 . + . gene_id "RvY_09848"; transcript_id "RvY_09848.1"; Scaffold005 rebuild transcript 44836 52651 . - . gene_id "RvY_09849"; transcript_id "RvY_09849.1"; gene_name "HS3ST3"; annotation "putative Heparan sulfate glucosamine 3-O-sulfotransferase 4"; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; EC "EC2.8.2.23|EC2.8.2.30"; KO "K07809"; similar_genes "HS3S4_HUMAN(e-value:6.8e-44;bit-score:175.0)"; Scaffold005 rebuild exon 44836 45457 . - . gene_id "RvY_09849"; transcript_id "RvY_09849.1"; Scaffold005 rebuild exon 52026 52651 . - . gene_id "RvY_09849"; transcript_id "RvY_09849.1"; Scaffold005 rebuild transcript 45698 45949 . + . gene_id "RvY_09850"; transcript_id "RvY_09850.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 45698 45949 . + . gene_id "RvY_09850"; transcript_id "RvY_09850.1"; Scaffold005 rebuild transcript 53761 53967 . - . gene_id "RvY_09851"; transcript_id "RvY_09851.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 53761 53967 . - . gene_id "RvY_09851"; transcript_id "RvY_09851.1"; Scaffold005 rebuild transcript 56546 58498 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; KO "K14410"; Scaffold005 rebuild exon 56546 56742 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 56804 56958 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 57027 57085 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 57154 57246 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 57322 57624 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 57739 58008 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 58098 58280 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild exon 58358 58498 . - . gene_id "RvY_09852"; transcript_id "RvY_09852.1"; Scaffold005 rebuild transcript 59345 61472 . + . gene_id "RvY_09853"; transcript_id "RvY_09853.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 59345 59462 . + . gene_id "RvY_09853"; transcript_id "RvY_09853.1"; Scaffold005 rebuild exon 59530 60130 . + . gene_id "RvY_09853"; transcript_id "RvY_09853.1"; Scaffold005 rebuild exon 60231 60813 . + . gene_id "RvY_09853"; transcript_id "RvY_09853.1"; Scaffold005 rebuild exon 61371 61472 . + . gene_id "RvY_09853"; transcript_id "RvY_09853.1"; Scaffold005 rebuild transcript 62120 65207 . + . gene_id "RvY_09854"; transcript_id "RvY_09854.1"; gene_name "PRK12323"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Provisional"; Scaffold005 rebuild exon 62120 64150 . + . gene_id "RvY_09854"; transcript_id "RvY_09854.1"; Scaffold005 rebuild exon 64212 65207 . + . gene_id "RvY_09854"; transcript_id "RvY_09854.1"; Scaffold005 rebuild transcript 65544 68312 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; Scaffold005 rebuild exon 65544 65851 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild exon 66106 66556 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild exon 66637 66761 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild exon 66843 67166 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild exon 67247 67321 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild exon 67725 68090 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild exon 68168 68312 . - . gene_id "RvY_09855"; transcript_id "RvY_09855.1"; Scaffold005 rebuild transcript 70520 71117 . + . gene_id "RvY_09856"; transcript_id "RvY_09856.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 70520 70815 . + . gene_id "RvY_09856"; transcript_id "RvY_09856.1"; Scaffold005 rebuild exon 70907 71117 . + . gene_id "RvY_09856"; transcript_id "RvY_09856.1"; Scaffold005 rebuild transcript 71988 73389 . - . gene_id "RvY_09857"; transcript_id "RvY_09857.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 71988 72518 . - . gene_id "RvY_09857"; transcript_id "RvY_09857.1"; Scaffold005 rebuild exon 73246 73389 . - . gene_id "RvY_09857"; transcript_id "RvY_09857.1"; Scaffold005 rebuild transcript 73436 73981 . - . gene_id "RvY_09858"; transcript_id "RvY_09858.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 73436 73981 . - . gene_id "RvY_09858"; transcript_id "RvY_09858.1"; Scaffold005 rebuild transcript 74822 76068 . + . gene_id "RvY_09859"; transcript_id "RvY_09859.1"; annotation "hypothetical protein."; Pfam "[CR6_interact] Growth arrest and DNA-damage-inducible proteins-interacting protein 1"; Scaffold005 rebuild exon 74822 75295 . + . gene_id "RvY_09859"; transcript_id "RvY_09859.1"; Scaffold005 rebuild exon 75706 76068 . + . gene_id "RvY_09859"; transcript_id "RvY_09859.1"; Scaffold005 rebuild transcript 78188 80467 . - . gene_id "RvY_09860"; transcript_id "RvY_09860.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 78188 78393 . - . gene_id "RvY_09860"; transcript_id "RvY_09860.1"; Scaffold005 rebuild exon 80152 80467 . - . gene_id "RvY_09860"; transcript_id "RvY_09860.1"; Scaffold005 rebuild transcript 78809 98497 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; gene_name "Ig2_KIRREL3-like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[C1-set] Immunoglobulin C1-set domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain"; CDD "Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development."; Scaffold005 rebuild exon 78809 78893 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 95666 96148 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 96221 96391 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 96596 96904 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 96966 97133 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 97385 97771 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 97841 98092 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild exon 98238 98497 . + . gene_id "RvY_09861"; transcript_id "RvY_09861.1"; Scaffold005 rebuild transcript 99384 100972 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 99384 99594 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild exon 99674 99780 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild exon 99856 100203 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild exon 100282 100431 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild exon 100505 100545 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild exon 100616 100737 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild exon 100830 100972 . + . gene_id "RvY_09862"; transcript_id "RvY_09862.1"; Scaffold005 rebuild transcript 101495 103210 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; gene_name "ILF2"; annotation "interleukin enhancer-binding factor 2"; Pfam "[DZF]"; CDD "domain in DSRM or ZnF_C2H2 domain containing proteins."; KO "K13089"; Scaffold005 rebuild exon 101495 101669 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 101751 101812 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 101916 102003 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 102067 102145 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 102257 102391 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 102472 102537 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 102605 102713 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 102821 103045 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild exon 103184 103210 . - . gene_id "RvY_09863"; transcript_id "RvY_09863.1"; Scaffold005 rebuild transcript 103799 104470 . - . gene_id "RvY_09864"; transcript_id "RvY_09864.1"; gene_name "PCBD"; annotation "putative Probable pterin-4-alpha-carbinolamine dehydratase"; Pfam "[Pterin_4a] Pterin 4 alpha carbinolamine dehydratase"; CDD "PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carcinomas and in malignant melanomas."; EC "EC4.2.1.96"; KO "K01724"; similar_genes "PHS_HYPDU(e-value:9.8e-39;bit-score:158.0)"; Scaffold005 rebuild exon 103799 104020 . - . gene_id "RvY_09864"; transcript_id "RvY_09864.1"; Scaffold005 rebuild exon 104092 104196 . - . gene_id "RvY_09864"; transcript_id "RvY_09864.1"; Scaffold005 rebuild exon 104309 104470 . - . gene_id "RvY_09864"; transcript_id "RvY_09864.1"; Scaffold005 rebuild transcript 104903 106675 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; gene_name "AbgB"; annotation "hypothetical protein."; CDD "Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]"; similar_genes "P20D2_MOUSE(e-value:7.6e-07;bit-score:52.0)"; Scaffold005 rebuild exon 104903 105203 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; Scaffold005 rebuild exon 105328 105464 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; Scaffold005 rebuild exon 105598 105747 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; Scaffold005 rebuild exon 105808 106099 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; Scaffold005 rebuild exon 106165 106263 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; Scaffold005 rebuild exon 106371 106675 . + . gene_id "RvY_09865"; transcript_id "RvY_09865.1"; Scaffold005 rebuild transcript 107928 110012 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 107928 108015 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; Scaffold005 rebuild exon 108205 108746 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; Scaffold005 rebuild exon 109001 109495 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; Scaffold005 rebuild exon 109570 109745 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; Scaffold005 rebuild exon 109829 109936 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; Scaffold005 rebuild exon 109997 110012 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.1"; Scaffold005 rebuild transcript 108201 110012 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.2"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 108201 108746 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.2"; Scaffold005 rebuild exon 109001 109495 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.2"; Scaffold005 rebuild exon 109570 109745 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.2"; Scaffold005 rebuild exon 109829 109936 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.2"; Scaffold005 rebuild exon 109997 110012 . - . gene_id "RvY_09866"; transcript_id "RvY_09866.2"; Scaffold005 rebuild transcript 115266 120083 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; gene_name "(1,2,5)trp(3,4)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2,5)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).(3,4)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 115266 115420 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 115520 115645 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 115711 115905 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 116115 116199 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 116260 116518 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 116696 117192 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 117324 117851 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 118047 118276 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 118333 118521 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 118598 118826 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 118903 119007 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 119070 119177 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 119245 119343 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 119406 119606 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 119672 119770 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild exon 119838 120083 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.1"; Scaffold005 rebuild transcript 115266 119469 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; gene_name "(1,2,5)trp(3,4)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2,5)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).(3,4)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 115266 115420 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 115520 115645 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 115711 115905 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 116115 116199 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 116260 116518 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 116696 117192 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 117324 117851 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 118047 118276 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 118333 118521 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 118598 118826 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 118903 119177 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 119245 119343 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild exon 119406 119469 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.2"; Scaffold005 rebuild transcript 120209 123387 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; gene_name "(1,2,5)trp(3,4)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2,5)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).(3,4)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 120209 120630 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 120888 120977 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 121039 121174 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 121299 121400 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 121616 121717 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 121793 121894 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 121962 122066 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 122162 122275 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 122358 122456 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 122541 122642 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild exon 122710 123387 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.3"; Scaffold005 rebuild transcript 119028 122057 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; gene_name "(1,2,5)trp(3,4)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2,5)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).(3,4)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 119028 119177 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 119245 119343 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 119406 119606 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 119672 119770 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 119838 119954 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 120022 120150 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 120227 120630 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 120888 120977 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 121039 121174 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 121299 121400 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 121616 121717 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 121793 121894 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild exon 121962 122057 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.4"; Scaffold005 rebuild transcript 115637 118127 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; gene_name "(1,2,5)trp(3,4)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1,2,5)transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).(3,4)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 115637 115905 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; Scaffold005 rebuild exon 116115 116199 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; Scaffold005 rebuild exon 116260 116518 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; Scaffold005 rebuild exon 116696 117192 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; Scaffold005 rebuild exon 117324 117851 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; Scaffold005 rebuild exon 118047 118127 . - . gene_id "RvY_09867"; transcript_id "RvY_09867.5"; Scaffold005 rebuild transcript 124076 132023 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ion_trans] Ion transport protein|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 124076 124209 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 124273 124368 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 124435 124632 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 124698 124824 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 124893 124950 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 125024 125737 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 125806 126064 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 126130 126657 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 126734 126977 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 127049 127225 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 127470 127715 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 127800 127894 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 127974 128103 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 128176 128280 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 128366 128470 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 128557 128856 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 129082 129764 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 129840 129905 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 129995 130018 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 130078 130251 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 130322 130349 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 130415 130516 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 130588 130689 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 130763 130969 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 131205 131318 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 131403 131501 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 131582 131686 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild exon 131757 132023 . - . gene_id "RvY_09868"; transcript_id "RvY_09868.1"; Scaffold005 rebuild transcript 132431 135917 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; gene_name "trp"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; Scaffold005 rebuild exon 132431 132567 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 132805 132924 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 132996 133178 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 133369 133525 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 133592 133784 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 133984 134276 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 134353 134533 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 134873 135433 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 135522 135544 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 135612 135827 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild exon 135885 135917 . - . gene_id "RvY_09869"; transcript_id "RvY_09869.1"; Scaffold005 rebuild transcript 136248 137347 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "ANK3_HUMAN(e-value:3.9e-06;bit-score:49.0)"; Scaffold005 rebuild exon 136248 136382 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.1"; Scaffold005 rebuild exon 136460 136666 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.1"; Scaffold005 rebuild exon 136898 137347 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.1"; Scaffold005 rebuild transcript 136439 137386 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.2"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "ANK3_HUMAN(e-value:3.9e-06;bit-score:49.0)"; Scaffold005 rebuild exon 136439 136666 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.2"; Scaffold005 rebuild exon 136898 137386 . - . gene_id "RvY_09870"; transcript_id "RvY_09870.2"; Scaffold005 rebuild transcript 138322 141129 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 138322 138414 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 138528 138601 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 139361 139496 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 139565 139666 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 139731 139832 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 139918 140019 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 140080 140184 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 140274 140387 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 140508 140606 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 140677 140778 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild exon 140854 141129 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.1"; Scaffold005 rebuild transcript 137472 139609 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 137472 137597 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 137666 137794 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 137857 137963 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 138019 138249 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 138333 138414 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 138528 138601 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 139361 139496 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild exon 139565 139609 . - . gene_id "RvY_09871"; transcript_id "RvY_09871.2"; Scaffold005 rebuild transcript 142135 144304 . - . gene_id "RvY_09872"; transcript_id "RvY_09872.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 142135 142580 . - . gene_id "RvY_09872"; transcript_id "RvY_09872.1"; Scaffold005 rebuild exon 142812 143154 . - . gene_id "RvY_09872"; transcript_id "RvY_09872.1"; Scaffold005 rebuild exon 143888 144304 . - . gene_id "RvY_09872"; transcript_id "RvY_09872.1"; Scaffold005 rebuild transcript 145218 146801 . + . gene_id "RvY_09873"; transcript_id "RvY_09873.1"; gene_name "TTL"; annotation "hypothetical protein."; Pfam "[TTL] Tubulin-tyrosine ligase family"; CDD "Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis."; EC "EC6.-.-.-"; similar_genes "TTLL1_HUMAN(e-value:7.3e-18;bit-score:88.0)"; Scaffold005 rebuild exon 145218 146801 . + . gene_id "RvY_09873"; transcript_id "RvY_09873.1"; Scaffold005 rebuild transcript 146832 147770 . + . gene_id "RvY_09874"; transcript_id "RvY_09874.1"; gene_name "TTL"; annotation "hypothetical protein."; Pfam "[TTL] Tubulin-tyrosine ligase family"; CDD "Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis."; EC "EC6.-.-.-"; similar_genes "TTLL1_HUMAN(e-value:1.0e-23;bit-score:108.0)"; Scaffold005 rebuild exon 146832 147152 . + . gene_id "RvY_09874"; transcript_id "RvY_09874.1"; Scaffold005 rebuild exon 147204 147770 . + . gene_id "RvY_09874"; transcript_id "RvY_09874.1"; Scaffold005 rebuild transcript 148266 148565 . - . gene_id "RvY_09875"; transcript_id "RvY_09875.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 148266 148565 . - . gene_id "RvY_09875"; transcript_id "RvY_09875.1"; Scaffold005 rebuild transcript 148516 148995 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 148516 148720 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.1"; Scaffold005 rebuild exon 148819 148927 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.1"; Scaffold005 rebuild exon 148986 148995 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.1"; Scaffold005 rebuild transcript 148516 148931 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 148516 148720 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.2"; Scaffold005 rebuild exon 148819 148931 . + . gene_id "RvY_09876"; transcript_id "RvY_09876.2"; Scaffold005 rebuild transcript 149020 152825 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M28] Peptidase family M28"; EC "EC3.4.-.-"; similar_genes "ERMP1_XENLA(e-value:1.9e-22;bit-score:104.0)"; Scaffold005 rebuild exon 149020 149512 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 149587 149831 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 149907 150012 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 150112 150255 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 150325 150477 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 150580 150747 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 150855 151084 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 151151 151334 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 151396 151583 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 151670 151831 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 151895 152097 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 152176 152312 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 152391 152578 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild exon 152640 152825 . + . gene_id "RvY_09877"; transcript_id "RvY_09877.1"; Scaffold005 rebuild transcript 153381 155142 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; gene_name "hutI"; annotation "putative Probable imidazolonepropionase"; Pfam "[Amidohydro_5] Amidohydrolase|[Amidohydro_3] Amidohydrolase family|[Amidohydro_1] Amidohydrolase family|[Amidohydro_4] Amidohydrolase"; CDD "Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon."; EC "EC3.5.2.7"; KO "K01468"; similar_genes "HUTI_NEMVE(e-value:2.1e-47;bit-score:187.0)"; Scaffold005 rebuild exon 153381 153580 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild exon 153643 153814 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild exon 153878 154024 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild exon 154085 154215 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild exon 154281 154506 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild exon 154585 154803 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild exon 154885 155142 . + . gene_id "RvY_09878"; transcript_id "RvY_09878.1"; Scaffold005 rebuild transcript 156479 157493 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.1"; annotation "hypothetical protein."; Pfam "[MARVEL] Membrane-associating domain"; Scaffold005 rebuild exon 156479 156535 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.1"; Scaffold005 rebuild exon 156659 156847 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.1"; Scaffold005 rebuild exon 156951 157094 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.1"; Scaffold005 rebuild exon 157377 157493 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.1"; Scaffold005 rebuild transcript 156983 157588 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.2"; annotation "hypothetical protein."; Pfam "[MARVEL] Membrane-associating domain"; Scaffold005 rebuild exon 156983 157094 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.2"; Scaffold005 rebuild exon 157377 157588 . + . gene_id "RvY_09879"; transcript_id "RvY_09879.2"; Scaffold005 rebuild transcript 158212 160224 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; gene_name "HPD"; annotation "4-hydroxyphenylpyruvate dioxygenase"; Pfam "[Glyoxalase] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|[Glyoxalase_4] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|[Glyoxalase_3] Glyoxalase-like domain|[Glyoxalase_2] Glyoxalase-like domain"; CDD "4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PMID:8000039). In some bacterial species, this enzyme has been studied as a hemolysin."; EC "EC1.13.11.27"; KO "K00457"; similar_genes "HPPD_DANRE(e-value:1.9e-90;bit-score:330.0)"; Scaffold005 rebuild exon 158212 158214 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 158350 158376 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 158443 158505 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 158584 158731 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 158828 159000 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 159086 159192 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 159254 159331 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 159417 159651 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 159748 159864 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 159945 160067 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild exon 160150 160224 . + . gene_id "RvY_09880"; transcript_id "RvY_09880.1"; Scaffold005 rebuild transcript 162506 171452 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; gene_name "ABCA1"; annotation "ATP-binding cassette sub-family A member 1"; Pfam "[AAA_23] AAA domain|[ABC2_membrane_3] ABC-2 family transporter protein|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease."; KO "K05641"; similar_genes "ABCA1_HUMAN(e-value:3.5e-62;bit-score:236.0)"; Scaffold005 rebuild exon 162506 162664 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 162727 162780 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 162862 163571 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 163657 163878 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 163963 164430 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 164654 165043 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 165313 165917 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 165978 166222 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 166290 166602 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 166672 167180 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 167382 167810 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 167878 168117 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 168195 168298 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 168377 168630 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 168691 169119 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 169320 169958 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 170167 170549 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild exon 170742 171452 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.1"; Scaffold005 rebuild transcript 162506 171611 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; gene_name "ABCA1"; annotation "ATP-binding cassette sub-family A member 1"; Pfam "[AAA_23] AAA domain|[ABC2_membrane_3] ABC-2 family transporter protein|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease."; KO "K05641"; similar_genes "ABCA1_HUMAN(e-value:3.5e-62;bit-score:236.0)"; Scaffold005 rebuild exon 162506 162664 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 162727 162780 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 162862 163571 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 163657 163878 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 163963 164430 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 164654 165043 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 165313 165917 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 165978 166222 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 166290 166602 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 166672 167180 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 167382 167810 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 167878 168117 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 168195 168298 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 168377 168630 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 168691 169119 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 169320 169958 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 170167 170549 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 170742 171371 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild exon 171558 171611 . + . gene_id "RvY_09881"; transcript_id "RvY_09881.2"; Scaffold005 rebuild transcript 172043 173706 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; gene_name "NDUFA10"; annotation "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 [EC:1.6.5.3 1.6.99.3]"; Pfam "[dNK] Deoxynucleoside kinase|[AAA_18] AAA domain|[AAA_17] AAA domain|[Thymidylate_kin] Thymidylate kinase|[AAA_33] AAA domain"; CDD "NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space."; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03954"; Scaffold005 rebuild exon 172043 172204 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; Scaffold005 rebuild exon 172293 172410 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; Scaffold005 rebuild exon 172480 172739 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; Scaffold005 rebuild exon 172809 172930 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; Scaffold005 rebuild exon 173009 173095 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; Scaffold005 rebuild exon 173154 173706 . - . gene_id "RvY_09882"; transcript_id "RvY_09882.1"; Scaffold005 rebuild transcript 174475 176459 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; gene_name "USP30"; annotation "ubiquitin carboxyl-terminal hydrolase 30 [EC:3.1.2.15]"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; EC "EC3.1.2.15"; KO "K11851"; Scaffold005 rebuild exon 174475 175051 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; Scaffold005 rebuild exon 175142 175245 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; Scaffold005 rebuild exon 175361 175669 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; Scaffold005 rebuild exon 175738 175875 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; Scaffold005 rebuild exon 175971 176167 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; Scaffold005 rebuild exon 176237 176459 . + . gene_id "RvY_09883"; transcript_id "RvY_09883.1"; Scaffold005 rebuild transcript 176848 178179 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 176848 176941 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.1"; Scaffold005 rebuild exon 177020 177316 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.1"; Scaffold005 rebuild exon 177420 177817 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.1"; Scaffold005 rebuild exon 177895 177970 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.1"; Scaffold005 rebuild exon 178058 178179 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.1"; Scaffold005 rebuild transcript 176848 177838 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 176848 176941 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.2"; Scaffold005 rebuild exon 177020 177316 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.2"; Scaffold005 rebuild exon 177420 177838 . + . gene_id "RvY_09884"; transcript_id "RvY_09884.2"; Scaffold005 rebuild transcript 179099 179725 . + . gene_id "RvY_09885"; transcript_id "RvY_09885.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 179099 179466 . + . gene_id "RvY_09885"; transcript_id "RvY_09885.1"; Scaffold005 rebuild exon 179533 179725 . + . gene_id "RvY_09885"; transcript_id "RvY_09885.1"; Scaffold005 rebuild transcript 180670 182854 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; annotation "hypothetical protein."; Pfam "[SET]|[Pre-SET] Pre-SET motif"; EC "EC2.1.1.43"; similar_genes "SUVH2_ARATH(e-value:8.0e-13;bit-score:72.0)"; Scaffold005 rebuild exon 180670 180811 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 180895 181111 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 181427 181589 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 181656 181748 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 181817 181938 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 182043 182129 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 182216 182294 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 182394 182449 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 182527 182655 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild exon 182722 182854 . + . gene_id "RvY_09886"; transcript_id "RvY_09886.1"; Scaffold005 rebuild transcript 183342 183795 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.1"; gene_name "(1)DPM3"; annotation "(1)dolichyl-phosphate mannosyltransferase polypeptide 3(2)hypothetical protein."; Pfam "[DPM3] Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)"; KO "(1)K09659"; Scaffold005 rebuild exon 183342 183392 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.1"; Scaffold005 rebuild exon 183486 183593 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.1"; Scaffold005 rebuild exon 183676 183795 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.1"; Scaffold005 rebuild transcript 183471 183795 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.2"; gene_name "(1)DPM3"; annotation "(1)dolichyl-phosphate mannosyltransferase polypeptide 3(2)hypothetical protein."; Pfam "[DPM3] Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)"; KO "(1)K09659"; Scaffold005 rebuild exon 183471 183593 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.2"; Scaffold005 rebuild exon 183676 183795 . - . gene_id "RvY_09887"; transcript_id "RvY_09887.2"; Scaffold005 rebuild transcript 184032 184385 . - . gene_id "RvY_09888"; transcript_id "RvY_09888.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 184032 184385 . - . gene_id "RvY_09888"; transcript_id "RvY_09888.1"; Scaffold005 rebuild transcript 184868 185757 . + . gene_id "RvY_09889"; transcript_id "RvY_09889.1"; annotation "hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; Scaffold005 rebuild exon 184868 184887 . + . gene_id "RvY_09889"; transcript_id "RvY_09889.1"; Scaffold005 rebuild exon 185017 185150 . + . gene_id "RvY_09889"; transcript_id "RvY_09889.1"; Scaffold005 rebuild exon 185393 185757 . + . gene_id "RvY_09889"; transcript_id "RvY_09889.1"; Scaffold005 rebuild transcript 186710 188146 . + . gene_id "RvY_09890"; transcript_id "RvY_09890.1"; gene_name "rplB_bact"; annotation "hypothetical protein."; Pfam "[Ribosomal_L2_C] Ribosomal Proteins L2, C-terminal domain|[Ribosomal_L2] Ribosomal Proteins L2, RNA binding domain"; CDD "ribosomal protein L2, bacterial/organellar. This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts."; Scaffold005 rebuild exon 186710 187163 . + . gene_id "RvY_09890"; transcript_id "RvY_09890.1"; Scaffold005 rebuild exon 187273 187373 . + . gene_id "RvY_09890"; transcript_id "RvY_09890.1"; Scaffold005 rebuild exon 187505 187649 . + . gene_id "RvY_09890"; transcript_id "RvY_09890.1"; Scaffold005 rebuild exon 187713 188146 . + . gene_id "RvY_09890"; transcript_id "RvY_09890.1"; Scaffold005 rebuild transcript 188493 190210 . - . gene_id "RvY_09891"; transcript_id "RvY_09891.1"; annotation "hypothetical protein."; Pfam "[Tmemb_161AB] Predicted transmembrane protein 161AB"; Scaffold005 rebuild exon 188493 188989 . - . gene_id "RvY_09891"; transcript_id "RvY_09891.1"; Scaffold005 rebuild exon 189049 189263 . - . gene_id "RvY_09891"; transcript_id "RvY_09891.1"; Scaffold005 rebuild exon 189319 189628 . - . gene_id "RvY_09891"; transcript_id "RvY_09891.1"; Scaffold005 rebuild exon 189802 190210 . - . gene_id "RvY_09891"; transcript_id "RvY_09891.1"; Scaffold005 rebuild transcript 190993 192713 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.1"; gene_name "ALG11"; annotation "alpha-1,2-mannosyltransferase [EC:2.4.1.-]"; Pfam "[Glyco_trans_1_4] Glycosyl transferases group 1|[Glycos_transf_1] Glycosyl transferases group 1"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides."; EC "EC2.4.-.-|EC2.4.1.-"; KO "K03844"; similar_genes "ALG11_XENTR(e-value:5.6e-20;bit-score:95.0)"; Scaffold005 rebuild exon 190993 191156 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.1"; Scaffold005 rebuild exon 191239 191334 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.1"; Scaffold005 rebuild exon 191413 191672 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.1"; Scaffold005 rebuild exon 191749 192713 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.1"; Scaffold005 rebuild transcript 191008 192713 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.2"; gene_name "ALG11"; annotation "alpha-1,2-mannosyltransferase [EC:2.4.1.-]"; Pfam "[Glyco_trans_1_4] Glycosyl transferases group 1|[Glycos_transf_1] Glycosyl transferases group 1"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides."; EC "EC2.4.-.-|EC2.4.1.-"; KO "K03844"; similar_genes "ALG11_XENTR(e-value:5.6e-20;bit-score:95.0)"; Scaffold005 rebuild exon 191008 191156 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.2"; Scaffold005 rebuild exon 191239 191334 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.2"; Scaffold005 rebuild exon 191413 191672 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.2"; Scaffold005 rebuild exon 191749 192713 . + . gene_id "RvY_09892"; transcript_id "RvY_09892.2"; Scaffold005 rebuild transcript 193359 200126 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; annotation "hypothetical protein."; Pfam "[Nup96] Nuclear protein 96|[Nucleoporin_FG] Nucleoporin FG repeat region|[Nucleoporin2] Nucleoporin autopeptidase"; KO "K14297"; Scaffold005 rebuild exon 193359 193770 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 193979 194410 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 194718 195143 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 195269 195628 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 195690 196095 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 196155 196666 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 196814 197244 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 197817 198678 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 198875 199138 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild exon 199198 200126 . + . gene_id "RvY_09893"; transcript_id "RvY_09893.1"; Scaffold005 rebuild transcript 200516 201039 . - . gene_id "RvY_09894"; transcript_id "RvY_09894.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 200516 200635 . - . gene_id "RvY_09894"; transcript_id "RvY_09894.1"; Scaffold005 rebuild exon 200902 201039 . - . gene_id "RvY_09894"; transcript_id "RvY_09894.1"; Scaffold005 rebuild transcript 200933 201908 . + . gene_id "RvY_09895"; transcript_id "RvY_09895.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 200933 200998 . + . gene_id "RvY_09895"; transcript_id "RvY_09895.1"; Scaffold005 rebuild exon 201097 201318 . + . gene_id "RvY_09895"; transcript_id "RvY_09895.1"; Scaffold005 rebuild exon 201384 201908 . + . gene_id "RvY_09895"; transcript_id "RvY_09895.1"; Scaffold005 rebuild transcript 202132 203959 . - . gene_id "RvY_09896"; transcript_id "RvY_09896.1"; gene_name "RpsE"; annotation "hypothetical protein."; Pfam "[Ribosomal_S5_C] Ribosomal protein S5, C-terminal domain|[Ribosomal_S5] Ribosomal protein S5, N-terminal domain"; CDD "Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]"; similar_genes "RT05_CAEEL(e-value:1.6e-15;bit-score:81.0)"; Scaffold005 rebuild exon 202132 202709 . - . gene_id "RvY_09896"; transcript_id "RvY_09896.1"; Scaffold005 rebuild exon 202883 203186 . - . gene_id "RvY_09896"; transcript_id "RvY_09896.1"; Scaffold005 rebuild exon 203389 203606 . - . gene_id "RvY_09896"; transcript_id "RvY_09896.1"; Scaffold005 rebuild exon 203668 203959 . - . gene_id "RvY_09896"; transcript_id "RvY_09896.1"; Scaffold005 rebuild transcript 204693 205371 . + . gene_id "RvY_09897"; transcript_id "RvY_09897.1"; annotation "hypothetical protein."; Pfam "[COX16] Cytochrome c oxidase assembly protein COX16"; Scaffold005 rebuild exon 204693 204764 . + . gene_id "RvY_09897"; transcript_id "RvY_09897.1"; Scaffold005 rebuild exon 204905 204979 . + . gene_id "RvY_09897"; transcript_id "RvY_09897.1"; Scaffold005 rebuild exon 205065 205142 . + . gene_id "RvY_09897"; transcript_id "RvY_09897.1"; Scaffold005 rebuild exon 205231 205371 . + . gene_id "RvY_09897"; transcript_id "RvY_09897.1"; Scaffold005 rebuild transcript 206798 212193 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; annotation "hypothetical protein."; Pfam "[TILa]|[fn3] Fibronectin type III domain|[VWC] von Willebrand factor type C domain"; Scaffold005 rebuild exon 206798 207005 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 207340 207411 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 207953 208098 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 208161 208332 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 208638 209117 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 209258 209776 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 210018 210359 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 210438 210662 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 210814 211014 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 211092 211421 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 211620 211907 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild exon 211967 212193 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.1"; Scaffold005 rebuild transcript 206798 212193 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; annotation "hypothetical protein."; Pfam "[TILa]|[fn3] Fibronectin type III domain|[VWC] von Willebrand factor type C domain"; Scaffold005 rebuild exon 206798 207005 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 207340 207411 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 207953 208098 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 208197 208332 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 208638 209117 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 209258 209776 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 210018 210359 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 210438 210662 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 210814 211014 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 211092 211421 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 211620 211907 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild exon 211967 212193 . + . gene_id "RvY_09898"; transcript_id "RvY_09898.2"; Scaffold005 rebuild transcript 212621 212883 . - . gene_id "RvY_09899"; transcript_id "RvY_09899.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 212621 212765 . - . gene_id "RvY_09899"; transcript_id "RvY_09899.1"; Scaffold005 rebuild exon 212843 212883 . - . gene_id "RvY_09899"; transcript_id "RvY_09899.1"; Scaffold005 rebuild transcript 212966 213478 . + . gene_id "RvY_09900"; transcript_id "RvY_09900.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 212966 213478 . + . gene_id "RvY_09900"; transcript_id "RvY_09900.1"; Scaffold005 rebuild transcript 214630 216880 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; annotation "hypothetical protein."; Pfam "(2)[SAM_1] SAM domain (Sterile alpha motif)|[PHD] PHD-finger"; Scaffold005 rebuild exon 214630 215205 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild exon 215274 215463 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild exon 215533 215651 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild exon 215729 215807 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild exon 216013 216213 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild exon 216284 216446 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild exon 216508 216880 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.1"; Scaffold005 rebuild transcript 215322 216902 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; annotation "hypothetical protein."; Pfam "(2)[SAM_1] SAM domain (Sterile alpha motif)|[PHD] PHD-finger"; Scaffold005 rebuild exon 215322 215463 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild exon 215533 215651 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild exon 215729 215807 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild exon 216013 216213 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild exon 216284 216446 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild exon 216508 216706 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild exon 216777 216902 . + . gene_id "RvY_09901"; transcript_id "RvY_09901.2"; Scaffold005 rebuild transcript 216953 219026 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; gene_name "CYP4V"; annotation "cytochrome P450, family 4, subfamily V"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.-.-"; KO "K07427"; similar_genes "CP4V3_RAT(e-value:1.6e-11;bit-score:67.0)"; Scaffold005 rebuild exon 216953 217116 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 217189 217308 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 217372 217437 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 217529 218064 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 218170 218239 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 218317 218534 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 218606 218783 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild exon 218855 219026 . - . gene_id "RvY_09902"; transcript_id "RvY_09902.1"; Scaffold005 rebuild transcript 220302 220676 . - . gene_id "RvY_09903"; transcript_id "RvY_09903.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 220302 220676 . - . gene_id "RvY_09903"; transcript_id "RvY_09903.1"; Scaffold005 rebuild transcript 220718 221306 . - . gene_id "RvY_09904"; transcript_id "RvY_09904.1"; gene_name "LSM3"; annotation "putative U6 snRNA-associated Sm-like protein LSm3"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K12622"; similar_genes "LSM3_HUMAN(e-value:2.8e-34;bit-score:143.0)"; Scaffold005 rebuild exon 220718 220795 . - . gene_id "RvY_09904"; transcript_id "RvY_09904.1"; Scaffold005 rebuild exon 220874 220969 . - . gene_id "RvY_09904"; transcript_id "RvY_09904.1"; Scaffold005 rebuild exon 221072 221173 . - . gene_id "RvY_09904"; transcript_id "RvY_09904.1"; Scaffold005 rebuild exon 221271 221306 . - . gene_id "RvY_09904"; transcript_id "RvY_09904.1"; Scaffold005 rebuild transcript 221916 222665 . + . gene_id "RvY_09905"; transcript_id "RvY_09905.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "MTPN_DANRE(e-value:2.2e-23;bit-score:107.0)"; Scaffold005 rebuild exon 221916 222002 . + . gene_id "RvY_09905"; transcript_id "RvY_09905.1"; Scaffold005 rebuild exon 222100 222146 . + . gene_id "RvY_09905"; transcript_id "RvY_09905.1"; Scaffold005 rebuild exon 222228 222291 . + . gene_id "RvY_09905"; transcript_id "RvY_09905.1"; Scaffold005 rebuild exon 222371 222454 . + . gene_id "RvY_09905"; transcript_id "RvY_09905.1"; Scaffold005 rebuild exon 222576 222665 . + . gene_id "RvY_09905"; transcript_id "RvY_09905.1"; Scaffold005 rebuild transcript 223310 225483 . + . gene_id "RvY_09906"; transcript_id "RvY_09906.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 223310 223636 . + . gene_id "RvY_09906"; transcript_id "RvY_09906.1"; Scaffold005 rebuild exon 223831 224578 . + . gene_id "RvY_09906"; transcript_id "RvY_09906.1"; Scaffold005 rebuild exon 224641 224726 . + . gene_id "RvY_09906"; transcript_id "RvY_09906.1"; Scaffold005 rebuild exon 224795 225059 . + . gene_id "RvY_09906"; transcript_id "RvY_09906.1"; Scaffold005 rebuild exon 225125 225483 . + . gene_id "RvY_09906"; transcript_id "RvY_09906.1"; Scaffold005 rebuild transcript 226011 227039 . + . gene_id "RvY_09907"; transcript_id "RvY_09907.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 226011 227039 . + . gene_id "RvY_09907"; transcript_id "RvY_09907.1"; Scaffold005 rebuild transcript 227522 238027 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 227522 227725 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 227795 227917 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 227975 228187 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 228254 228458 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 228528 228697 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 228766 228855 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 228913 229098 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 229191 229301 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 229376 229820 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 229910 229948 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 230032 230632 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 230885 231322 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 231768 232224 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 232286 232652 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 232877 234149 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 234223 234502 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 234567 234851 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 234986 235343 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 235407 235580 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 235647 235849 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 235917 236109 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 236166 236377 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 236439 236623 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 236716 236904 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 236969 237064 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 237155 237325 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 237409 237578 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 237797 237917 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild exon 238006 238027 . - . gene_id "RvY_09908"; transcript_id "RvY_09908.1"; Scaffold005 rebuild transcript 239554 247007 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; gene_name "B41"; annotation "hypothetical protein."; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; Scaffold005 rebuild exon 239554 239637 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 242947 243097 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 243202 243280 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 243343 243443 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 243657 243780 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 244116 244556 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 244646 245082 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 245316 246206 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 246269 246729 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild exon 246795 247007 . + . gene_id "RvY_09909"; transcript_id "RvY_09909.1"; Scaffold005 rebuild transcript 247885 248205 . + . gene_id "RvY_09910"; transcript_id "RvY_09910.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 247885 248205 . + . gene_id "RvY_09910"; transcript_id "RvY_09910.1"; Scaffold005 rebuild transcript 248834 252188 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; gene_name "MMP15"; annotation "matrix metalloproteinase-15 (membrane-inserted) [EC:3.4.24.-]"; Pfam "[Hemopexin]|[PG_binding_1] Putative peptidoglycan binding domain|[Peptidase_M10] Matrixin"; EC "EC3.4.24.-|EC3.4.24.12"; KO "K07995"; similar_genes "HE_HEMPU(e-value:4.3e-20;bit-score:96.0)"; Scaffold005 rebuild exon 248834 248959 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 249109 249238 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 249705 249806 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 249879 249979 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 250050 250169 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 250238 251063 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 251198 251296 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 251369 251412 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 251473 251614 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 251697 251872 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild exon 251988 252188 . + . gene_id "RvY_09911"; transcript_id "RvY_09911.1"; Scaffold005 rebuild transcript 254119 254421 . - . gene_id "RvY_09912"; transcript_id "RvY_09912.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 254119 254421 . - . gene_id "RvY_09912"; transcript_id "RvY_09912.1"; Scaffold005 rebuild transcript 255501 256010 . - . gene_id "RvY_09913"; transcript_id "RvY_09913.1"; annotation "hypothetical protein."; Pfam "[zf-CCHC] Zinc knuckle"; Scaffold005 rebuild exon 255501 256010 . - . gene_id "RvY_09913"; transcript_id "RvY_09913.1"; Scaffold005 rebuild transcript 256013 257839 . - . gene_id "RvY_09914"; transcript_id "RvY_09914.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 256013 256282 . - . gene_id "RvY_09914"; transcript_id "RvY_09914.1"; Scaffold005 rebuild exon 256630 256740 . - . gene_id "RvY_09914"; transcript_id "RvY_09914.1"; Scaffold005 rebuild exon 257789 257839 . - . gene_id "RvY_09914"; transcript_id "RvY_09914.1"; Scaffold005 rebuild transcript 257726 258235 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M10] Matrixin"; Scaffold005 rebuild exon 257726 258235 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.1"; Scaffold005 rebuild transcript 257907 258326 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.2"; annotation "hypothetical protein."; Pfam "[Peptidase_M10] Matrixin"; Scaffold005 rebuild exon 257907 258326 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.2"; Scaffold005 rebuild transcript 257279 257772 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.3"; annotation "hypothetical protein."; Pfam "[Peptidase_M10] Matrixin"; Scaffold005 rebuild exon 257279 257428 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.3"; Scaffold005 rebuild exon 257511 257630 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.3"; Scaffold005 rebuild exon 257695 257772 . + . gene_id "RvY_09915"; transcript_id "RvY_09915.3"; Scaffold005 rebuild transcript 258484 259277 . + . gene_id "RvY_09916"; transcript_id "RvY_09916.1"; annotation "hypothetical protein."; Pfam "[Hemopexin]"; Scaffold005 rebuild exon 258484 258507 . + . gene_id "RvY_09916"; transcript_id "RvY_09916.1"; Scaffold005 rebuild exon 258634 258732 . + . gene_id "RvY_09916"; transcript_id "RvY_09916.1"; Scaffold005 rebuild exon 258887 258962 . + . gene_id "RvY_09916"; transcript_id "RvY_09916.1"; Scaffold005 rebuild exon 259126 259277 . + . gene_id "RvY_09916"; transcript_id "RvY_09916.1"; Scaffold005 rebuild transcript 259976 263102 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; annotation "hypothetical protein."; Pfam "(1)[PG_binding_1] Putative peptidoglycan binding domain|[Peptidase_M10] Matrixin"; EC "(1)EC3.4.24.12"; similar_genes "(1)HE_PARLI(e-value:9.5e-18;bit-score:88.0)(2)K2C1_HUMAN(e-value:4.2e-16;bit-score:83.0)"; Scaffold005 rebuild exon 259976 260186 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild exon 260255 260563 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild exon 260632 260690 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild exon 260769 261555 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild exon 261617 261991 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild exon 262088 262471 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild exon 262552 263102 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.1"; Scaffold005 rebuild transcript 260739 262524 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.2"; annotation "hypothetical protein."; Pfam "(1)[PG_binding_1] Putative peptidoglycan binding domain|[Peptidase_M10] Matrixin"; EC "(1)EC3.4.24.12"; similar_genes "(1)HE_PARLI(e-value:9.5e-18;bit-score:88.0)(2)K2C1_HUMAN(e-value:4.2e-16;bit-score:83.0)"; Scaffold005 rebuild exon 260739 261555 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.2"; Scaffold005 rebuild exon 261617 261991 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.2"; Scaffold005 rebuild exon 262088 262524 . + . gene_id "RvY_09917"; transcript_id "RvY_09917.2"; Scaffold005 rebuild transcript 263235 264254 . - . gene_id "RvY_09918"; transcript_id "RvY_09918.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 263235 263516 . - . gene_id "RvY_09918"; transcript_id "RvY_09918.1"; Scaffold005 rebuild exon 263600 263699 . - . gene_id "RvY_09918"; transcript_id "RvY_09918.1"; Scaffold005 rebuild exon 263757 263827 . - . gene_id "RvY_09918"; transcript_id "RvY_09918.1"; Scaffold005 rebuild exon 264006 264254 . - . gene_id "RvY_09918"; transcript_id "RvY_09918.1"; Scaffold005 rebuild transcript 264643 266099 . + . gene_id "RvY_09919"; transcript_id "RvY_09919.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 264643 264753 . + . gene_id "RvY_09919"; transcript_id "RvY_09919.1"; Scaffold005 rebuild exon 264888 265121 . + . gene_id "RvY_09919"; transcript_id "RvY_09919.1"; Scaffold005 rebuild exon 265182 266099 . + . gene_id "RvY_09919"; transcript_id "RvY_09919.1"; Scaffold005 rebuild transcript 266361 267005 . - . gene_id "RvY_09920"; transcript_id "RvY_09920.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 266361 267005 . - . gene_id "RvY_09920"; transcript_id "RvY_09920.1"; Scaffold005 rebuild transcript 267326 269072 . - . gene_id "RvY_09921"; transcript_id "RvY_09921.1"; gene_name "cca"; annotation "putative tRNA-nucleotidyltransferase 1, mitochondrial"; Pfam "[PolyA_pol_RNAbd] Probable RNA and SrmB- binding site of polymerase A|[PolyA_pol] Poly A polymerase head domain"; CDD "tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]"; EC "EC2.7.7.21|EC2.7.7.25|EC3.1.3.-|EC3.1.4.-"; KO "K00974"; similar_genes "TRNT1_HUMAN(e-value:7.1e-50;bit-score:195.0)"; Scaffold005 rebuild exon 267326 267817 . - . gene_id "RvY_09921"; transcript_id "RvY_09921.1"; Scaffold005 rebuild exon 267890 268110 . - . gene_id "RvY_09921"; transcript_id "RvY_09921.1"; Scaffold005 rebuild exon 268196 268408 . - . gene_id "RvY_09921"; transcript_id "RvY_09921.1"; Scaffold005 rebuild exon 268469 269072 . - . gene_id "RvY_09921"; transcript_id "RvY_09921.1"; Scaffold005 rebuild transcript 268974 269171 . + . gene_id "RvY_09922"; transcript_id "RvY_09922.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 268974 269171 . + . gene_id "RvY_09922"; transcript_id "RvY_09922.1"; Scaffold005 rebuild transcript 269571 277449 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; annotation "hypothetical protein."; KO "K15199"; Scaffold005 rebuild exon 269571 269616 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 269684 270078 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 270219 270373 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 270461 270592 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 270693 270819 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 270922 271104 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 271196 271430 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 271502 271721 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 271916 272328 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 272396 272596 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 272718 273086 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 273318 273617 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 274039 274330 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 274526 275063 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 275275 275640 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 275961 276314 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 276380 276543 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 276617 276879 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild exon 276986 277449 . + . gene_id "RvY_09923"; transcript_id "RvY_09923.1"; Scaffold005 rebuild transcript 277657 281892 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; gene_name "AVIL"; annotation "advillin"; Pfam "[VHP] Villin headpiece domain|[Gelsolin] Gelsolin repeat"; CDD "Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains."; KO "K08017"; similar_genes "AVIL_HUMAN(e-value:2.2e-19;bit-score:93.0)"; Scaffold005 rebuild exon 277657 277908 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 277977 278045 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 278111 278233 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 278340 278444 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 278575 278823 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 278891 279091 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 279169 279392 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 279462 279635 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 279741 279897 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 280161 280259 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 280335 280529 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 280605 280823 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 280899 281001 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 281095 281225 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 281322 281387 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 281511 281549 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 281638 281712 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild exon 281788 281892 . - . gene_id "RvY_09924"; transcript_id "RvY_09924.1"; Scaffold005 rebuild transcript 283214 288526 . + . gene_id "RvY_09925"; transcript_id "RvY_09925.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "YA046_HUMAN(e-value:2.8e-19;bit-score:93.0)"; Scaffold005 rebuild exon 283214 283753 . + . gene_id "RvY_09925"; transcript_id "RvY_09925.1"; Scaffold005 rebuild exon 284024 284683 . + . gene_id "RvY_09925"; transcript_id "RvY_09925.1"; Scaffold005 rebuild exon 284954 285721 . + . gene_id "RvY_09925"; transcript_id "RvY_09925.1"; Scaffold005 rebuild exon 285872 286799 . + . gene_id "RvY_09925"; transcript_id "RvY_09925.1"; Scaffold005 rebuild exon 287016 288526 . + . gene_id "RvY_09925"; transcript_id "RvY_09925.1"; Scaffold005 rebuild transcript 288874 289419 . - . gene_id "RvY_09926"; transcript_id "RvY_09926.1"; gene_name "speG"; annotation "diamine N-acetyltransferase [EC:2.3.1.57]"; Pfam "[FR47] FR47-like protein|[Acetyltransf_10] Acetyltransferase (GNAT) domain|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; EC "EC2.3.1.57"; KO "K00657"; Scaffold005 rebuild exon 288874 289419 . - . gene_id "RvY_09926"; transcript_id "RvY_09926.1"; Scaffold005 rebuild transcript 289757 290359 . + . gene_id "RvY_09927"; transcript_id "RvY_09927.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 289757 290359 . + . gene_id "RvY_09927"; transcript_id "RvY_09927.1"; Scaffold005 rebuild transcript 290737 293448 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[FCH] Fes/CIP4, and EFC/F-BAR homology domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "EG13_ECHGR(e-value:5.5e-16;bit-score:82.0)"; Scaffold005 rebuild exon 290737 290843 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 290928 291061 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 291783 292048 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 292125 292346 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 292435 292560 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 292657 292794 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 292886 293031 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 293104 293163 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild exon 293241 293448 . - . gene_id "RvY_09928"; transcript_id "RvY_09928.1"; Scaffold005 rebuild transcript 294152 294538 . + . gene_id "RvY_09929"; transcript_id "RvY_09929.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 294152 294538 . + . gene_id "RvY_09929"; transcript_id "RvY_09929.1"; Scaffold005 rebuild transcript 295050 300617 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; gene_name "SPOP"; annotation "Protein roadkill"; Pfam "[BTB] BTB/POZ domain|[MATH]"; CDD "Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family."; KO "K10523"; similar_genes "RDX_DROME(e-value:7.0e-152;bit-score:534.0)"; Scaffold005 rebuild exon 295050 295206 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 295298 295440 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 295524 295702 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 295973 296150 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 296215 296342 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 296406 296557 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 296628 296749 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild exon 300540 300617 . - . gene_id "RvY_09930"; transcript_id "RvY_09930.1"; Scaffold005 rebuild transcript 301401 302505 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 301401 301628 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.1"; Scaffold005 rebuild exon 301713 301881 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.1"; Scaffold005 rebuild exon 302057 302135 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.1"; Scaffold005 rebuild exon 302221 302270 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.1"; Scaffold005 rebuild exon 302351 302505 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.1"; Scaffold005 rebuild transcript 301100 301771 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 301100 301628 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.2"; Scaffold005 rebuild exon 301713 301771 . - . gene_id "RvY_09931"; transcript_id "RvY_09931.2"; Scaffold005 rebuild transcript 303256 303948 . + . gene_id "RvY_09932"; transcript_id "RvY_09932.1"; gene_name "SKP1"; annotation "putative S-phase kinase-associated protein 1"; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain|[Skp1] Skp1 family, dimerisation domain"; CDD "SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]"; KO "K03094"; similar_genes "SKP1_HUMAN(e-value:4.2e-35;bit-score:146.0)"; Scaffold005 rebuild exon 303256 303324 . + . gene_id "RvY_09932"; transcript_id "RvY_09932.1"; Scaffold005 rebuild exon 303415 303537 . + . gene_id "RvY_09932"; transcript_id "RvY_09932.1"; Scaffold005 rebuild exon 303613 303948 . + . gene_id "RvY_09932"; transcript_id "RvY_09932.1"; Scaffold005 rebuild transcript 304907 308131 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; gene_name "(1)TC.NSS"; annotation "(1)putative Sodium- and chloride-dependent glycine transporter 2(2)hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; KO "(1)K03308"; similar_genes "(1)SC6A5_MOUSE(e-value:1.8e-31;bit-score:134.0)(2)SC6A6_MOUSE(e-value:2.7e-13;bit-score:73.0)"; Scaffold005 rebuild exon 304907 304909 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 305009 305246 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 305398 305583 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 305648 305901 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 305996 306109 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 306208 306286 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 306359 306435 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 306521 306590 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 306671 306704 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 306797 307006 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 307071 307227 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 307301 307430 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 307491 307530 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 307611 307647 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 307725 307898 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild exon 307976 308131 . + . gene_id "RvY_09933"; transcript_id "RvY_09933.1"; Scaffold005 rebuild transcript 308712 314281 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 308712 308743 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 308804 309349 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 309676 310418 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 310478 310857 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 311156 311457 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 311612 312205 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 312601 312933 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 313037 313104 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 313450 313505 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 313601 313722 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild exon 313789 314281 . - . gene_id "RvY_09934"; transcript_id "RvY_09934.1"; Scaffold005 rebuild transcript 315243 316643 . - . gene_id "RvY_09935"; transcript_id "RvY_09935.1"; gene_name "CIR"; annotation "CBF1 interacting corepressor"; Pfam "[Cir_N] N-terminal domain of CBF1 interacting co-repressor CIR"; KO "K06066"; similar_genes "CIR1_RAT(e-value:3.1e-12;bit-score:70.0)"; Scaffold005 rebuild exon 315243 315565 . - . gene_id "RvY_09935"; transcript_id "RvY_09935.1"; Scaffold005 rebuild exon 315654 315890 . - . gene_id "RvY_09935"; transcript_id "RvY_09935.1"; Scaffold005 rebuild exon 315965 316146 . - . gene_id "RvY_09935"; transcript_id "RvY_09935.1"; Scaffold005 rebuild exon 316267 316511 . - . gene_id "RvY_09935"; transcript_id "RvY_09935.1"; Scaffold005 rebuild exon 316572 316643 . - . gene_id "RvY_09935"; transcript_id "RvY_09935.1"; Scaffold005 rebuild transcript 317173 323180 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; gene_name "SF3B1"; annotation "Splicing factor 3B subunit 1"; Pfam "[HEAT_2] HEAT repeats|[SF3b1] Splicing factor 3B subunit 1|[HEAT_EZ] HEAT-like repeat|[HEAT] HEAT repeat"; CDD "U2 snRNP spliceosome subunit [RNA processing and modification]"; KO "K12828"; similar_genes "SF3B1_HUMAN(e-value:0.0e+00;bit-score:1488.0)"; Scaffold005 rebuild exon 317173 317200 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 317308 317591 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 317666 317786 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 318416 319024 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 319103 319229 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 319289 319464 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 319537 320169 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 320469 320848 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 321081 321474 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 321684 321842 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 321915 322530 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild exon 322805 323180 . + . gene_id "RvY_09936"; transcript_id "RvY_09936.1"; Scaffold005 rebuild transcript 323914 328910 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; annotation "hypothetical protein."; Pfam "[Integrin_alpha2] Integrin alpha|[VCBS] Family description|[FG-GAP] FG-GAP repeat"; Scaffold005 rebuild exon 323914 324113 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 324186 324435 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 324542 324686 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 324828 325429 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 325502 325649 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 325712 325900 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 325996 326041 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 326132 326704 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 326942 327143 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 327206 327525 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 327607 327691 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 327781 328026 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 328113 328367 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild exon 328557 328910 . + . gene_id "RvY_09937"; transcript_id "RvY_09937.1"; Scaffold005 rebuild transcript 332448 334091 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.1"; gene_name "(1)LBX"; annotation "(1)putative Transcription factor LBX1(2)hypothetical protein."; Pfam "[Homeobox]"; KO "(1)K09353"; similar_genes "(1)LBX1_HUMAN(e-value:1.6e-28;bit-score:124.0)(2)LBX1_HUMAN(e-value:1.7e-19;bit-score:94.0)"; Scaffold005 rebuild exon 332448 332582 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.1"; Scaffold005 rebuild exon 332689 332710 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.1"; Scaffold005 rebuild exon 332794 332887 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.1"; Scaffold005 rebuild exon 332992 333096 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.1"; Scaffold005 rebuild exon 333647 334091 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.1"; Scaffold005 rebuild transcript 332733 334091 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.2"; gene_name "(1)LBX"; annotation "(1)putative Transcription factor LBX1(2)hypothetical protein."; Pfam "[Homeobox]"; KO "(1)K09353"; similar_genes "(1)LBX1_HUMAN(e-value:1.6e-28;bit-score:124.0)(2)LBX1_HUMAN(e-value:1.7e-19;bit-score:94.0)"; Scaffold005 rebuild exon 332733 332887 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.2"; Scaffold005 rebuild exon 332992 333096 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.2"; Scaffold005 rebuild exon 333647 334091 . - . gene_id "RvY_09938"; transcript_id "RvY_09938.2"; Scaffold005 rebuild transcript 335232 335581 . - . gene_id "RvY_09939"; transcript_id "RvY_09939.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 335232 335336 . - . gene_id "RvY_09939"; transcript_id "RvY_09939.1"; Scaffold005 rebuild exon 335462 335581 . - . gene_id "RvY_09939"; transcript_id "RvY_09939.1"; Scaffold005 rebuild transcript 336316 340747 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; gene_name "Na_sulph_symp"; annotation "hypothetical protein."; Pfam "[Na_sulph_symp] Sodium:sulfate symporter transmembrane region|[CitMHS] Citrate transporter"; CDD "Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1."; KO "K14445"; similar_genes "S13A5_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold005 rebuild exon 336316 336414 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 336498 336647 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 336820 336964 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 337066 337095 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 337199 337540 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 337620 337677 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 339181 339300 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 339384 339479 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 339550 339856 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 340138 340299 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 340364 340466 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild exon 340536 340747 . + . gene_id "RvY_09940"; transcript_id "RvY_09940.1"; Scaffold005 rebuild transcript 341879 343226 . - . gene_id "RvY_09941"; transcript_id "RvY_09941.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 341879 342075 . - . gene_id "RvY_09941"; transcript_id "RvY_09941.1"; Scaffold005 rebuild exon 342161 343226 . - . gene_id "RvY_09941"; transcript_id "RvY_09941.1"; Scaffold005 rebuild transcript 343771 346095 . + . gene_id "RvY_09942"; transcript_id "RvY_09942.1"; gene_name "EXT1"; annotation "Exostosin-1a"; Pfam "[Exostosin] Exostosin family|[Glyco_transf_64] Glycosyl transferase family 64 domain"; EC "EC2.4.1.224|EC2.4.1.225"; KO "K02366"; similar_genes "EXT1A_DANRE(e-value:5.3e-65;bit-score:245.0)"; Scaffold005 rebuild exon 343771 344403 . + . gene_id "RvY_09942"; transcript_id "RvY_09942.1"; Scaffold005 rebuild exon 344578 346095 . + . gene_id "RvY_09942"; transcript_id "RvY_09942.1"; Scaffold005 rebuild transcript 346640 347133 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 346640 346698 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.1"; Scaffold005 rebuild exon 346776 346810 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.1"; Scaffold005 rebuild exon 346946 347133 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.1"; Scaffold005 rebuild transcript 346413 346994 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 346413 346508 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.2"; Scaffold005 rebuild exon 346615 346698 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.2"; Scaffold005 rebuild exon 346776 346810 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.2"; Scaffold005 rebuild exon 346946 346994 . - . gene_id "RvY_09943"; transcript_id "RvY_09943.2"; Scaffold005 rebuild transcript 348209 348755 . - . gene_id "RvY_09944"; transcript_id "RvY_09944.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 348209 348295 . - . gene_id "RvY_09944"; transcript_id "RvY_09944.1"; Scaffold005 rebuild exon 348393 348476 . - . gene_id "RvY_09944"; transcript_id "RvY_09944.1"; Scaffold005 rebuild exon 348557 348591 . - . gene_id "RvY_09944"; transcript_id "RvY_09944.1"; Scaffold005 rebuild exon 348707 348755 . - . gene_id "RvY_09944"; transcript_id "RvY_09944.1"; Scaffold005 rebuild transcript 348727 349406 . + . gene_id "RvY_09945"; transcript_id "RvY_09945.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 348727 348780 . + . gene_id "RvY_09945"; transcript_id "RvY_09945.1"; Scaffold005 rebuild exon 349224 349406 . + . gene_id "RvY_09945"; transcript_id "RvY_09945.1"; Scaffold005 rebuild transcript 349479 351614 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; gene_name "TIGR02231"; annotation "hypothetical protein."; Pfam "[DUF4139]|(1)[DUF4140] N-terminal domain of unknown function (DUF4140)"; CDD "conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown."; Scaffold005 rebuild exon 349479 349643 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 349713 349952 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 350017 350247 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 350310 350573 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 350649 350778 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 350861 351054 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 351125 351323 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild exon 351397 351614 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.1"; Scaffold005 rebuild transcript 349644 350765 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.2"; gene_name "TIGR02231"; annotation "hypothetical protein."; Pfam "[DUF4139]|(1)[DUF4140] N-terminal domain of unknown function (DUF4140)"; CDD "conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown."; Scaffold005 rebuild exon 349644 349952 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.2"; Scaffold005 rebuild exon 350017 350247 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.2"; Scaffold005 rebuild exon 350310 350573 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.2"; Scaffold005 rebuild exon 350649 350765 . - . gene_id "RvY_09946"; transcript_id "RvY_09946.2"; Scaffold005 rebuild transcript 354895 356171 . + . gene_id "RvY_09947"; transcript_id "RvY_09947.1"; gene_name "WD40"; annotation "WD repeat-containing protein 5"; Pfam "[WD40] WD domain, G-beta repeat|[DUF3312]|[eIF2A] Eukaryotic translation initiation factor eIF2A|[Nup160] Nucleoporin Nup120/160"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14963"; similar_genes "WDR5_XENTR(e-value:4.9e-123;bit-score:438.0)"; Scaffold005 rebuild exon 354895 355149 . + . gene_id "RvY_09947"; transcript_id "RvY_09947.1"; Scaffold005 rebuild exon 355211 355448 . + . gene_id "RvY_09947"; transcript_id "RvY_09947.1"; Scaffold005 rebuild exon 355648 356171 . + . gene_id "RvY_09947"; transcript_id "RvY_09947.1"; Scaffold005 rebuild transcript 356669 357564 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.1"; gene_name "BAR"; annotation "hypothetical protein."; Pfam "[BAR]"; CDD "BAR domain."; Scaffold005 rebuild exon 356669 356716 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.1"; Scaffold005 rebuild exon 356817 357087 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.1"; Scaffold005 rebuild exon 357199 357332 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.1"; Scaffold005 rebuild exon 357397 357564 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.1"; Scaffold005 rebuild transcript 356669 357564 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.2"; gene_name "BAR"; annotation "hypothetical protein."; Pfam "[BAR]"; CDD "BAR domain."; Scaffold005 rebuild exon 356669 356716 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.2"; Scaffold005 rebuild exon 356817 357087 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.2"; Scaffold005 rebuild exon 357199 357332 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.2"; Scaffold005 rebuild exon 357400 357564 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.2"; Scaffold005 rebuild transcript 356669 357415 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.3"; gene_name "BAR"; annotation "hypothetical protein."; Pfam "[BAR]"; CDD "BAR domain."; Scaffold005 rebuild exon 356669 356716 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.3"; Scaffold005 rebuild exon 356817 357087 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.3"; Scaffold005 rebuild exon 357199 357332 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.3"; Scaffold005 rebuild exon 357401 357415 . + . gene_id "RvY_09948"; transcript_id "RvY_09948.3"; Scaffold005 rebuild transcript 358453 360840 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; gene_name "STAM"; annotation "signal transducing adaptor molecule"; Pfam "[VHS]|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries."; KO "K04705"; similar_genes "STAM2_CHICK(e-value:1.5e-22;bit-score:104.0)"; Scaffold005 rebuild exon 358453 358761 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 358835 359064 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 359169 359345 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 359422 359513 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 359582 359967 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 360053 360107 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 360187 360272 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 360346 360523 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 360617 360701 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild exon 360795 360840 . - . gene_id "RvY_09949"; transcript_id "RvY_09949.1"; Scaffold005 rebuild transcript 360920 361345 . - . gene_id "RvY_09950"; transcript_id "RvY_09950.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 360920 361345 . - . gene_id "RvY_09950"; transcript_id "RvY_09950.1"; Scaffold005 rebuild transcript 363454 364353 . - . gene_id "RvY_09951"; transcript_id "RvY_09951.1"; gene_name "FOXB"; annotation "Forkhead box protein B1"; Pfam "[Fork_head] Fork head domain"; KO "K09395"; similar_genes "FOXB1_MOUSE(e-value:3.2e-52;bit-score:203.0)"; Scaffold005 rebuild exon 363454 364048 . - . gene_id "RvY_09951"; transcript_id "RvY_09951.1"; Scaffold005 rebuild exon 364172 364353 . - . gene_id "RvY_09951"; transcript_id "RvY_09951.1"; Scaffold005 rebuild transcript 365737 367081 . - . gene_id "RvY_09952"; transcript_id "RvY_09952.1"; gene_name "NAP1L1"; annotation "nucleosome assembly protein 1-like 1"; Pfam "[NAP] Nucleosome assembly protein (NAP)"; KO "K11279"; Scaffold005 rebuild exon 365737 366177 . - . gene_id "RvY_09952"; transcript_id "RvY_09952.1"; Scaffold005 rebuild exon 366377 367081 . - . gene_id "RvY_09952"; transcript_id "RvY_09952.1"; Scaffold005 rebuild transcript 367686 368242 . - . gene_id "RvY_09953"; transcript_id "RvY_09953.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 367686 367783 . - . gene_id "RvY_09953"; transcript_id "RvY_09953.1"; Scaffold005 rebuild exon 367867 368242 . - . gene_id "RvY_09953"; transcript_id "RvY_09953.1"; Scaffold005 rebuild transcript 370336 371549 . + . gene_id "RvY_09954"; transcript_id "RvY_09954.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 370336 370425 . + . gene_id "RvY_09954"; transcript_id "RvY_09954.1"; Scaffold005 rebuild exon 370490 370634 . + . gene_id "RvY_09954"; transcript_id "RvY_09954.1"; Scaffold005 rebuild exon 371440 371549 . + . gene_id "RvY_09954"; transcript_id "RvY_09954.1"; Scaffold005 rebuild transcript 371267 371533 . + . gene_id "RvY_09954"; transcript_id "RvY_09954.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 371267 371533 . + . gene_id "RvY_09954"; transcript_id "RvY_09954.2"; Scaffold005 rebuild transcript 372584 373354 . + . gene_id "RvY_09955"; transcript_id "RvY_09955.1"; gene_name "FLAD1"; annotation "FAD synthetase [EC:2.7.7.2]"; Pfam "[PAPS_reduct] Phosphoadenosine phosphosulfate reductase family"; CDD "This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the Scaffold005 rebuild exon 372584 373354 . + . gene_id "RvY_09955"; transcript_id "RvY_09955.1"; Scaffold005 rebuild transcript 373746 375816 . - . gene_id "RvY_09956"; transcript_id "RvY_09956.1"; gene_name "PDIA3"; annotation "Protein disulfide-isomerase A3"; Pfam "[AhpC-TSA] AhpC/TSA family|[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_7] Thioredoxin-like|[Thioredoxin_8] Thioredoxin-like|[Thioredoxin]"; CDD "protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs)."; EC "EC5.3.4.1"; KO "K08056"; similar_genes "PDIA3_BOVIN(e-value:4.8e-51;bit-score:199.0)"; Scaffold005 rebuild exon 373746 374031 . - . gene_id "RvY_09956"; transcript_id "RvY_09956.1"; Scaffold005 rebuild exon 374145 374252 . - . gene_id "RvY_09956"; transcript_id "RvY_09956.1"; Scaffold005 rebuild exon 374323 374585 . - . gene_id "RvY_09956"; transcript_id "RvY_09956.1"; Scaffold005 rebuild exon 374768 375455 . - . gene_id "RvY_09956"; transcript_id "RvY_09956.1"; Scaffold005 rebuild exon 375650 375816 . - . gene_id "RvY_09956"; transcript_id "RvY_09956.1"; Scaffold005 rebuild transcript 376248 378624 . - . gene_id "RvY_09957"; transcript_id "RvY_09957.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 376248 376716 . - . gene_id "RvY_09957"; transcript_id "RvY_09957.1"; Scaffold005 rebuild exon 376873 377489 . - . gene_id "RvY_09957"; transcript_id "RvY_09957.1"; Scaffold005 rebuild exon 377596 378413 . - . gene_id "RvY_09957"; transcript_id "RvY_09957.1"; Scaffold005 rebuild exon 378576 378624 . - . gene_id "RvY_09957"; transcript_id "RvY_09957.1"; Scaffold005 rebuild transcript 377639 378481 . + . gene_id "RvY_09958"; transcript_id "RvY_09958.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 377639 378481 . + . gene_id "RvY_09958"; transcript_id "RvY_09958.1"; Scaffold005 rebuild transcript 381748 384093 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; gene_name "groEL"; annotation "60 kDa heat shock protein, mitochondrial"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "chaperonin GroEL; Reviewed"; KO "K04077"; similar_genes "CH60_CRIGR(e-value:2.7e-202;bit-score:701.0)"; Scaffold005 rebuild exon 381748 381918 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 382009 382187 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 382276 382450 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 382550 382895 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 383049 383311 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 383376 383554 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 383617 383869 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild exon 383932 384093 . - . gene_id "RvY_09959"; transcript_id "RvY_09959.1"; Scaffold005 rebuild transcript 384771 385614 . + . gene_id "RvY_09960"; transcript_id "RvY_09960.1"; gene_name "groES"; annotation "chaperonin GroES"; Pfam "[Cpn10] Chaperonin 10 Kd subunit"; CDD "Chaperonin 10 Kd subunit. This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis."; KO "K04078"; similar_genes "CH10_SCHJA(e-value:1.2e-11;bit-score:68.0)"; Scaffold005 rebuild exon 384771 384773 . + . gene_id "RvY_09960"; transcript_id "RvY_09960.1"; Scaffold005 rebuild exon 384899 385087 . + . gene_id "RvY_09960"; transcript_id "RvY_09960.1"; Scaffold005 rebuild exon 385268 385357 . + . gene_id "RvY_09960"; transcript_id "RvY_09960.1"; Scaffold005 rebuild exon 385458 385491 . + . gene_id "RvY_09960"; transcript_id "RvY_09960.1"; Scaffold005 rebuild exon 385565 385614 . + . gene_id "RvY_09960"; transcript_id "RvY_09960.1"; Scaffold005 rebuild transcript 386042 388222 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; gene_name "CS"; annotation "Citrate synthase, mitochondrial"; Pfam "[Citrate_synt] Citrate synthase"; CDD "Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the Scaffold005 rebuild exon 386042 386215 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 386298 386507 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 386593 386801 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 386879 387104 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 387168 387356 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 387463 387660 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 387823 387930 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 388015 388065 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild exon 388175 388222 . - . gene_id "RvY_09961"; transcript_id "RvY_09961.1"; Scaffold005 rebuild transcript 389192 389872 . + . gene_id "RvY_09962"; transcript_id "RvY_09962.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 389192 389872 . + . gene_id "RvY_09962"; transcript_id "RvY_09962.1"; Scaffold005 rebuild transcript 390120 390496 . + . gene_id "RvY_09963"; transcript_id "RvY_09963.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 390120 390255 . + . gene_id "RvY_09963"; transcript_id "RvY_09963.1"; Scaffold005 rebuild exon 390327 390496 . + . gene_id "RvY_09963"; transcript_id "RvY_09963.1"; Scaffold005 rebuild transcript 390733 392674 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 390733 390775 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild exon 390846 391032 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild exon 391099 391543 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild exon 391637 391751 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild exon 391854 391987 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild exon 392057 392334 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild exon 392404 392674 . + . gene_id "RvY_09964"; transcript_id "RvY_09964.1"; Scaffold005 rebuild transcript 393064 395901 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 393064 393366 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 393995 394172 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 394249 394427 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 394494 394610 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 394679 394767 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 394839 395100 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 395162 395296 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 395364 395517 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 395589 395694 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild exon 395778 395901 . + . gene_id "RvY_09965"; transcript_id "RvY_09965.1"; Scaffold005 rebuild transcript 396167 398219 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; gene_name "TUBB"; annotation "Tubulin beta-4 chain"; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Misat_Myo_SegII] Misato Segment II myosin-like domain|[Tubulin_C] Tubulin C-terminal domain"; CDD "The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins."; KO "K07375"; similar_genes "TBB4_XENLA(e-value:2.2e-250;bit-score:861.0)"; Scaffold005 rebuild exon 396167 396354 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 396434 396576 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 396652 396937 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 396994 397201 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 397271 397515 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 397657 397767 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 397946 398054 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild exon 398163 398219 . - . gene_id "RvY_09966"; transcript_id "RvY_09966.1"; Scaffold005 rebuild transcript 399147 400926 . + . gene_id "RvY_09967"; transcript_id "RvY_09967.1"; gene_name "IPPase"; annotation "hypothetical protein."; Pfam "[Inositol_P] Inositol monophosphatase family"; CDD "IPPase; Inositol polyphosphate-1-phosphatase, a member of the Mg++ dependent family of inositol monophosphatase-like domains, hydrolyzes the 1' position phosphate from inositol 1,3,4-trisphosphate and inositol 1,4-bisphosphate. Members in this group may also exhibit 3'-phosphoadenosine 5'-phosphate phosphatase activity, and they all appear to be inhibited by lithium. IPPase is one of the proposed targets of Li+ therapy in manic-depressive illness."; EC "EC3.1.3.25"; similar_genes "IMPA3_DROPS(e-value:3.1e-12;bit-score:70.0)"; Scaffold005 rebuild exon 399147 399235 . + . gene_id "RvY_09967"; transcript_id "RvY_09967.1"; Scaffold005 rebuild exon 399295 399385 . + . gene_id "RvY_09967"; transcript_id "RvY_09967.1"; Scaffold005 rebuild exon 399817 400381 . + . gene_id "RvY_09967"; transcript_id "RvY_09967.1"; Scaffold005 rebuild exon 400535 400926 . + . gene_id "RvY_09967"; transcript_id "RvY_09967.1"; Scaffold005 rebuild transcript 401164 402040 . - . gene_id "RvY_09968"; transcript_id "RvY_09968.1"; gene_name "START"; annotation "hypothetical protein."; Pfam "[START]"; CDD "START(STeroidogenic Acute Regulatory (STAR) related lipid Transfer) Domain. These domains are 200-210 amino acid in length and occur in proteins involved in lipid transport (phosphatidylcholine) and metabolism, signal transduction, and transcriptional regulation. The most striking feature of the START domain structure is a predominantly hydrophobic tunnel extending nearly the entire protein and used to binding a single molecule of large lipophilic compounds, like cholesterol."; Scaffold005 rebuild exon 401164 401520 . - . gene_id "RvY_09968"; transcript_id "RvY_09968.1"; Scaffold005 rebuild exon 401602 401737 . - . gene_id "RvY_09968"; transcript_id "RvY_09968.1"; Scaffold005 rebuild exon 401821 401870 . - . gene_id "RvY_09968"; transcript_id "RvY_09968.1"; Scaffold005 rebuild exon 401951 402040 . - . gene_id "RvY_09968"; transcript_id "RvY_09968.1"; Scaffold005 rebuild transcript 403779 407408 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; gene_name "SH2"; annotation "hypothetical protein."; Pfam "[PH]|[BPS] BPS (Between PH and SH2)|[SH2]"; CDD "Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae."; Scaffold005 rebuild exon 403779 404153 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 404751 404843 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 404971 405117 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 405303 405410 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 405580 405672 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 405794 405871 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 405993 406118 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 406574 406716 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 407100 407254 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild exon 407311 407408 . + . gene_id "RvY_09969"; transcript_id "RvY_09969.1"; Scaffold005 rebuild transcript 408055 411008 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; gene_name "INPP1"; annotation "inositol polyphosphate 1-phosphatase [EC:3.1.3.57]"; Pfam "[Inositol_P] Inositol monophosphatase family"; CDD "IPPase; Inositol polyphosphate-1-phosphatase, a member of the Mg++ dependent family of inositol monophosphatase-like domains, hydrolyzes the 1' position phosphate from inositol 1,3,4-trisphosphate and inositol 1,4-bisphosphate. Members in this group may also exhibit 3'-phosphoadenosine 5'-phosphate phosphatase activity, and they all appear to be inhibited by lithium. IPPase is one of the proposed targets of Li+ therapy in manic-depressive illness."; EC "EC3.1.3.57"; KO "K01107"; similar_genes "INPP_BOVIN(e-value:1.6e-15;bit-score:81.0)"; Scaffold005 rebuild exon 408055 408186 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 408298 408409 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 408499 408783 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 408988 409168 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 409246 409435 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 409520 409600 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 409988 410017 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 410087 410151 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 410240 410448 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 410550 410603 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild exon 410950 411008 . - . gene_id "RvY_09970"; transcript_id "RvY_09970.1"; Scaffold005 rebuild transcript 411803 412838 . + . gene_id "RvY_09971"; transcript_id "RvY_09971.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 411803 412219 . + . gene_id "RvY_09971"; transcript_id "RvY_09971.1"; Scaffold005 rebuild exon 412347 412838 . + . gene_id "RvY_09971"; transcript_id "RvY_09971.1"; Scaffold005 rebuild transcript 413865 417984 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; gene_name "CRKRS"; annotation "Cell division cycle 2-like protein kinase CG7597"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing."; EC "EC2.7.11.22"; KO "K08819"; similar_genes "Y7597_DROME(e-value:4.3e-71;bit-score:265.0)"; Scaffold005 rebuild exon 413865 414252 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 414366 414497 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 414618 414812 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 414943 415104 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 415168 415357 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 415427 415600 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 415701 415840 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 415949 416701 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild exon 416978 417984 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.1"; Scaffold005 rebuild transcript 412651 417984 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; gene_name "CRKRS"; annotation "Cell division cycle 2-like protein kinase CG7597"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing."; EC "EC2.7.11.22"; KO "K08819"; similar_genes "Y7597_DROME(e-value:4.3e-71;bit-score:265.0)"; Scaffold005 rebuild exon 412651 412659 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 413904 414252 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 414366 414497 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 414618 414812 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 414943 415104 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 415168 415357 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 415427 415600 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 415701 415840 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 415949 416701 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild exon 416978 417984 . - . gene_id "RvY_09972"; transcript_id "RvY_09972.2"; Scaffold005 rebuild transcript 418906 419301 . + . gene_id "RvY_09973"; transcript_id "RvY_09973.1"; gene_name "SNRPC"; annotation "U1 small nuclear ribonucleoprotein C"; Pfam "[zf-U1] U1 zinc finger"; CDD "U1 zinc finger. This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family."; KO "K11095"; similar_genes "RU1C_HUMAN(e-value:7.3e-18;bit-score:88.0)"; Scaffold005 rebuild exon 418906 419301 . + . gene_id "RvY_09973"; transcript_id "RvY_09973.1"; Scaffold005 rebuild transcript 419777 420658 . - . gene_id "RvY_09974"; transcript_id "RvY_09974.1"; gene_name "RplS"; annotation "putative 39S ribosomal protein L19, mitochondrial"; Pfam "[Ribosomal_L19] Ribosomal protein L19"; CDD "Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]"; similar_genes "RM19_DROME(e-value:1.5e-39;bit-score:160.0)"; Scaffold005 rebuild exon 419777 420658 . - . gene_id "RvY_09974"; transcript_id "RvY_09974.1"; Scaffold005 rebuild transcript 420684 421181 . + . gene_id "RvY_09975"; transcript_id "RvY_09975.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 420684 421181 . + . gene_id "RvY_09975"; transcript_id "RvY_09975.1"; Scaffold005 rebuild transcript 421199 423075 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; gene_name "TUBB"; annotation "Tubulin beta chain"; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Misat_Myo_SegII] Misato Segment II myosin-like domain|[Tubulin_C] Tubulin C-terminal domain"; CDD "The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins."; KO "K07375"; similar_genes "TBB_PARLI(e-value:5.5e-262;bit-score:899.0)"; Scaffold005 rebuild exon 421199 421255 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 421358 421466 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 421543 421653 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 421725 421969 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 422043 422250 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 422307 422592 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 422675 422817 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild exon 422891 423075 . + . gene_id "RvY_09976"; transcript_id "RvY_09976.1"; Scaffold005 rebuild transcript 425633 429615 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 425633 425725 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.1"; Scaffold005 rebuild exon 426341 426682 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.1"; Scaffold005 rebuild exon 427645 427810 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.1"; Scaffold005 rebuild exon 428754 429017 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.1"; Scaffold005 rebuild exon 429362 429615 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.1"; Scaffold005 rebuild transcript 425114 425842 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 425114 425536 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.2"; Scaffold005 rebuild exon 425621 425842 . + . gene_id "RvY_09977"; transcript_id "RvY_09977.2"; Scaffold005 rebuild transcript 430126 432722 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; gene_name "DM10"; annotation "hypothetical protein."; Pfam "[DUF1126] Repeat of unknown function (DUF1126)"; CDD "Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases."; Scaffold005 rebuild exon 430126 430200 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; Scaffold005 rebuild exon 430297 430548 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; Scaffold005 rebuild exon 430614 430913 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; Scaffold005 rebuild exon 430979 431330 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; Scaffold005 rebuild exon 431520 432178 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; Scaffold005 rebuild exon 432246 432722 . + . gene_id "RvY_09978"; transcript_id "RvY_09978.1"; Scaffold005 rebuild transcript 433029 438925 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; gene_name "MDN1"; annotation "hypothetical protein."; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; Scaffold005 rebuild exon 433029 433291 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; Scaffold005 rebuild exon 433580 435343 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; Scaffold005 rebuild exon 435475 436026 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; Scaffold005 rebuild exon 436523 436564 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; Scaffold005 rebuild exon 436741 437208 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; Scaffold005 rebuild exon 438685 438925 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.1"; Scaffold005 rebuild transcript 433029 438925 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; gene_name "MDN1"; annotation "hypothetical protein."; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; Scaffold005 rebuild exon 433029 433291 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; Scaffold005 rebuild exon 433580 435298 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; Scaffold005 rebuild exon 435475 436026 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; Scaffold005 rebuild exon 436523 436564 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; Scaffold005 rebuild exon 436741 437208 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; Scaffold005 rebuild exon 438685 438925 . - . gene_id "RvY_09979"; transcript_id "RvY_09979.2"; Scaffold005 rebuild transcript 441792 443850 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; annotation "hypothetical protein."; Pfam "(1)[LCM] Leucine carboxyl methyltransferase|(2)[Kelch_4] Galactose oxidase, central domain"; EC "(1)EC2.1.1.-"; KO "(1)K15451"; similar_genes "(1)LCMT2_HUMAN(e-value:8.9e-10;bit-score:62.0)"; Scaffold005 rebuild exon 441792 442355 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 442428 442518 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 442599 442697 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 442776 443047 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 443139 443234 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 443319 443433 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 443516 443640 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild exon 443809 443850 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.1"; Scaffold005 rebuild transcript 440770 441837 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.2"; annotation "hypothetical protein."; Pfam "(1)[LCM] Leucine carboxyl methyltransferase|(2)[Kelch_4] Galactose oxidase, central domain"; EC "(1)EC2.1.1.-"; KO "(1)K15451"; similar_genes "(1)LCMT2_HUMAN(e-value:8.9e-10;bit-score:62.0)"; Scaffold005 rebuild exon 440770 440931 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.2"; Scaffold005 rebuild exon 440996 441313 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.2"; Scaffold005 rebuild exon 441392 441495 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.2"; Scaffold005 rebuild exon 441588 441837 . - . gene_id "RvY_09980"; transcript_id "RvY_09980.2"; Scaffold005 rebuild transcript 444500 447210 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; annotation "hypothetical protein."; Pfam "[DUF4205]"; similar_genes "F188A_XENTR(e-value:3.4e-24;bit-score:109.0)"; Scaffold005 rebuild exon 444500 444680 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 444769 444921 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 445020 445191 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 445261 445375 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 445688 445761 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 445829 445908 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 445987 446057 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 446135 446168 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 446247 446293 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 446512 446584 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 446664 446736 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 446800 446959 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild exon 447028 447210 . + . gene_id "RvY_09981"; transcript_id "RvY_09981.1"; Scaffold005 rebuild transcript 447914 450377 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold005 rebuild exon 447914 447973 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 448054 448354 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 448622 448720 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 448978 449116 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 449230 449349 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 449441 449556 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 449634 449715 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 449775 449893 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 449969 450115 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild exon 450196 450377 . + . gene_id "RvY_09982"; transcript_id "RvY_09982.1"; Scaffold005 rebuild transcript 451042 451665 . + . gene_id "RvY_09983"; transcript_id "RvY_09983.1"; gene_name "IMP2"; annotation "mitochondrial inner membrane protease subunit 2 [EC:3.4.99.-]"; Pfam "[Peptidase_S24] Peptidase S24-like|[Peptidase_S26] Signal peptidase, peptidase S26"; CDD "The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism."; EC "EC3.4.21.-|EC3.4.99.-"; KO "K09648"; similar_genes "IMP2_YEAST(e-value:8.8e-08;bit-score:55.0)"; Scaffold005 rebuild exon 451042 451665 . + . gene_id "RvY_09983"; transcript_id "RvY_09983.1"; Scaffold005 rebuild transcript 451746 452618 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 451746 451789 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.1"; Scaffold005 rebuild exon 451882 452130 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.1"; Scaffold005 rebuild exon 452220 452365 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.1"; Scaffold005 rebuild exon 452614 452618 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.1"; Scaffold005 rebuild transcript 451746 452170 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 451746 451789 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.2"; Scaffold005 rebuild exon 451882 452170 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.2"; Scaffold005 rebuild transcript 452009 452618 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 452009 452160 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.3"; Scaffold005 rebuild exon 452220 452365 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.3"; Scaffold005 rebuild exon 452614 452618 . + . gene_id "RvY_09984"; transcript_id "RvY_09984.3"; Scaffold005 rebuild transcript 452512 453702 . - . gene_id "RvY_09985"; transcript_id "RvY_09985.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 452512 453702 . - . gene_id "RvY_09985"; transcript_id "RvY_09985.1"; Scaffold005 rebuild transcript 452655 453717 . - . gene_id "RvY_09985"; transcript_id "RvY_09985.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 452655 452846 . - . gene_id "RvY_09985"; transcript_id "RvY_09985.2"; Scaffold005 rebuild exon 453067 453717 . - . gene_id "RvY_09985"; transcript_id "RvY_09985.2"; Scaffold005 rebuild transcript 452868 453510 . + . gene_id "RvY_09986"; transcript_id "RvY_09986.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 452868 452897 . + . gene_id "RvY_09986"; transcript_id "RvY_09986.1"; Scaffold005 rebuild exon 453055 453510 . + . gene_id "RvY_09986"; transcript_id "RvY_09986.1"; Scaffold005 rebuild transcript 453962 454705 . - . gene_id "RvY_09987"; transcript_id "RvY_09987.1"; annotation "hypothetical protein."; Pfam "[EMP24_GP25L] emp24/gp25L/p24 family/GOLD"; Scaffold005 rebuild exon 453962 454705 . - . gene_id "RvY_09987"; transcript_id "RvY_09987.1"; Scaffold005 rebuild transcript 455622 460249 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; gene_name "EH"; annotation "putative Intersectin-1"; Pfam "[efhand_3] Cytoskeletal-regulatory complex EF hand|[efhand] EF hand|[EF_hand_3] EF hand|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain|[EF_hand_5] EF-hand domain pair"; CDD "Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences."; similar_genes "ITSN1_HUMAN(e-value:2.7e-30;bit-score:130.0)"; Scaffold005 rebuild exon 455622 456117 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; Scaffold005 rebuild exon 456342 456811 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; Scaffold005 rebuild exon 456993 457694 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; Scaffold005 rebuild exon 457975 459156 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; Scaffold005 rebuild exon 459475 459859 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; Scaffold005 rebuild exon 460044 460249 . + . gene_id "RvY_09988"; transcript_id "RvY_09988.1"; Scaffold005 rebuild transcript 460822 461265 . + . gene_id "RvY_09989"; transcript_id "RvY_09989.1"; gene_name "PTZ00184"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "calmodulin; Provisional"; similar_genes "CALM_YEAST(e-value:2.9e-23;bit-score:106.0)"; Scaffold005 rebuild exon 460822 461265 . + . gene_id "RvY_09989"; transcript_id "RvY_09989.1"; Scaffold005 rebuild transcript 461328 462209 . - . gene_id "RvY_09990"; transcript_id "RvY_09990.1"; gene_name "PIGC"; annotation "phosphatidylinositol glycan, class C"; Pfam "[GPI2] Phosphatidylinositol N-acetylglucosaminyltransferase"; KO "K03859"; Scaffold005 rebuild exon 461328 462209 . - . gene_id "RvY_09990"; transcript_id "RvY_09990.1"; Scaffold005 rebuild transcript 462702 467459 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; gene_name "C2"; annotation "putative Uncharacterized protein KIAA0528 homolog"; Pfam "[C2]"; CDD "Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles."; similar_genes "K0528_PONAB(e-value:2.2e-36;bit-score:150.0)"; Scaffold005 rebuild exon 462702 462704 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 462760 462846 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 462929 463015 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 463088 463146 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 463232 463354 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 463439 463527 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 463596 464060 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 464128 464246 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 464308 464416 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 464521 464726 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 464804 464865 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 464932 465158 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 465300 465727 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 465796 465925 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 466010 466140 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 466219 466423 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 466504 466856 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 467171 467311 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild exon 467382 467459 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.1"; Scaffold005 rebuild transcript 462702 466079 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; gene_name "C2"; annotation "putative Uncharacterized protein KIAA0528 homolog"; Pfam "[C2]"; CDD "Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles."; similar_genes "K0528_PONAB(e-value:2.2e-36;bit-score:150.0)"; Scaffold005 rebuild exon 462702 462704 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 462760 462846 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 462929 463015 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 463088 463146 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 463232 463354 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 463439 463527 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 463596 464060 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 464128 464246 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 464308 464416 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 464521 464726 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 464804 464865 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 464932 465158 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 465300 465727 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 465796 465882 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild exon 466065 466079 . + . gene_id "RvY_09991"; transcript_id "RvY_09991.2"; Scaffold005 rebuild transcript 468046 470079 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; annotation "putative Smoothelin"; Pfam "[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain|[Smoothelin] Smoothelin cytoskeleton protein"; similar_genes "SMTN_MOUSE(e-value:9.2e-31;bit-score:131.0)"; Scaffold005 rebuild exon 468046 468184 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 468255 468406 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 468469 468565 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 469150 469237 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 469359 469409 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 469516 469691 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 469818 469894 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild exon 470026 470079 . - . gene_id "RvY_09992"; transcript_id "RvY_09992.1"; Scaffold005 rebuild transcript 471849 474121 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; gene_name "PSMC5"; annotation "26S protease regulatory subunit 8"; Pfam "[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_2] AAA domain (Cdc48 subfamily)"; CDD "ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]"; KO "K03066"; similar_genes "PRS8_BOVIN(e-value:3.1e-203;bit-score:704.0)"; Scaffold005 rebuild exon 471849 471902 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 471986 472069 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 472207 472276 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 472341 472438 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 472545 472670 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 472740 472901 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 473067 473230 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 473312 473465 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 473534 473632 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 473721 473831 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 473919 474005 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild exon 474068 474121 . + . gene_id "RvY_09993"; transcript_id "RvY_09993.1"; Scaffold005 rebuild transcript 474744 476502 . + . gene_id "RvY_09994"; transcript_id "RvY_09994.1"; gene_name "PDIA6"; annotation "Protein disulfide-isomerase A6"; Pfam "[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_7] Thioredoxin-like|[Thioredoxin_8] Thioredoxin-like|[Thioredoxin]|[Thioredoxin_3] Thioredoxin domain"; CDD "P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox Scaffold005 rebuild exon 474744 474922 . + . gene_id "RvY_09994"; transcript_id "RvY_09994.1"; Scaffold005 rebuild exon 475068 475125 . + . gene_id "RvY_09994"; transcript_id "RvY_09994.1"; Scaffold005 rebuild exon 475381 476502 . + . gene_id "RvY_09994"; transcript_id "RvY_09994.1"; Scaffold005 rebuild transcript 478119 480418 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; gene_name "Peptidase_S28"; annotation "hypothetical protein."; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Peptidase_S28] Serine carboxypeptidase S28|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Serine carboxypeptidase S28. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase."; EC "EC3.4.-.-"; similar_genes "TSSP_MOUSE(e-value:2.3e-08;bit-score:57.0)"; Scaffold005 rebuild exon 478119 478258 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild exon 478372 478444 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild exon 478545 478726 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild exon 478789 479021 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild exon 479318 479761 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild exon 479950 480246 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild exon 480315 480418 . + . gene_id "RvY_09995"; transcript_id "RvY_09995.1"; Scaffold005 rebuild transcript 480612 483653 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; gene_name "SLC16A6"; annotation "MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 6"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; KO "K08183"; Scaffold005 rebuild exon 480612 480997 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; Scaffold005 rebuild exon 481321 482229 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; Scaffold005 rebuild exon 482559 482678 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; Scaffold005 rebuild exon 482772 482915 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; Scaffold005 rebuild exon 482985 483141 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; Scaffold005 rebuild exon 483417 483653 . - . gene_id "RvY_09996"; transcript_id "RvY_09996.1"; Scaffold005 rebuild transcript 484968 485365 . - . gene_id "RvY_09997"; transcript_id "RvY_09997.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 484968 485179 . - . gene_id "RvY_09997"; transcript_id "RvY_09997.1"; Scaffold005 rebuild exon 485323 485365 . - . gene_id "RvY_09997"; transcript_id "RvY_09997.1"; Scaffold005 rebuild transcript 486479 489017 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; gene_name "SLC16A14"; annotation "MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 14"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; KO "K08190"; similar_genes "(1)MOT9_CHICK(e-value:2.0e-09;bit-score:60.0)(2)MOT14_MOUSE(e-value:7.9e-11;bit-score:65.0)"; Scaffold005 rebuild exon 486479 486772 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 486834 486904 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 486962 487183 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 487250 487858 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 487932 488165 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 488454 488621 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 488692 488852 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild exon 488980 489017 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.1"; Scaffold005 rebuild transcript 486479 489017 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; gene_name "SLC16A14"; annotation "MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 14"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; KO "K08190"; similar_genes "(1)MOT9_CHICK(e-value:2.0e-09;bit-score:60.0)(2)MOT14_MOUSE(e-value:7.9e-11;bit-score:65.0)"; Scaffold005 rebuild exon 486479 486772 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 486834 486904 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 486962 487183 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 487250 487858 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 487932 487967 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 488022 488165 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 488454 488621 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 488692 488852 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild exon 488980 489017 . - . gene_id "RvY_09998"; transcript_id "RvY_09998.2"; Scaffold005 rebuild transcript 491246 492232 . - . gene_id "RvY_09999"; transcript_id "RvY_09999.1"; gene_name "INO80C"; annotation "INO80 complex subunit C"; Pfam "[YL1_C] YL1 nuclear protein C-terminal domain"; CDD "Uncharacterized conserved protein [Function unknown]"; KO "K11667"; similar_genes "IN80C_MOUSE(e-value:4.0e-12;bit-score:69.0)"; Scaffold005 rebuild exon 491246 491286 . - . gene_id "RvY_09999"; transcript_id "RvY_09999.1"; Scaffold005 rebuild exon 491366 491456 . - . gene_id "RvY_09999"; transcript_id "RvY_09999.1"; Scaffold005 rebuild exon 491576 491643 . - . gene_id "RvY_09999"; transcript_id "RvY_09999.1"; Scaffold005 rebuild exon 491765 491870 . - . gene_id "RvY_09999"; transcript_id "RvY_09999.1"; Scaffold005 rebuild exon 491960 492232 . - . gene_id "RvY_09999"; transcript_id "RvY_09999.1"; Scaffold005 rebuild transcript 492642 494692 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; gene_name "HMG_box"; annotation "hypothetical protein."; Pfam "[HMG_box] HMG (high mobility group) box"; CDD "HMG (high mobility group) box."; Scaffold005 rebuild exon 492642 492869 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild exon 492935 493222 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild exon 493290 493592 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild exon 493666 493956 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild exon 494051 494209 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild exon 494313 494519 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild exon 494642 494692 . + . gene_id "RvY_10000"; transcript_id "RvY_10000.1"; Scaffold005 rebuild transcript 495493 499083 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold005 rebuild exon 495493 495852 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 495911 495990 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 496055 496169 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 496249 496482 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 496558 496728 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 496797 496844 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 496951 497011 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 497203 497450 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 497514 497727 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 497791 497845 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 497913 498240 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 498520 498687 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 498758 498787 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 498925 498983 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild exon 499038 499083 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.1"; Scaffold005 rebuild transcript 494865 499083 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold005 rebuild exon 494865 494919 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 495611 495852 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 495911 495990 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 496055 496169 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 496249 496482 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 496558 496728 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 496797 496844 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 496951 497011 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 497203 497450 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 497514 497727 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 497791 497845 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 497913 498240 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 498520 498687 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 498758 498787 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 498925 498983 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild exon 499038 499083 . + . gene_id "RvY_10001"; transcript_id "RvY_10001.2"; Scaffold005 rebuild transcript 499562 502763 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; gene_name "LIPE"; annotation "putative Hormone-sensitive lipase"; Pfam "[DUF2424]|[Abhydrolase_3] alpha/beta hydrolase fold|[HSL_N] Hormone-sensitive lipase (HSL) N-terminus"; EC "EC3.1.1.79"; KO "K07188"; similar_genes "LIPS_HUMAN(e-value:4.8e-34;bit-score:142.0)"; Scaffold005 rebuild exon 499562 500217 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild exon 500459 500620 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild exon 500698 501055 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild exon 501156 501383 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild exon 501446 501687 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild exon 501752 502569 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild exon 502645 502763 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.1"; Scaffold005 rebuild transcript 500621 502763 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.2"; gene_name "LIPE"; annotation "putative Hormone-sensitive lipase"; Pfam "[DUF2424]|[Abhydrolase_3] alpha/beta hydrolase fold|[HSL_N] Hormone-sensitive lipase (HSL) N-terminus"; EC "EC3.1.1.79"; KO "K07188"; similar_genes "LIPS_HUMAN(e-value:4.8e-34;bit-score:142.0)"; Scaffold005 rebuild exon 500621 501055 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.2"; Scaffold005 rebuild exon 501156 501383 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.2"; Scaffold005 rebuild exon 501446 501687 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.2"; Scaffold005 rebuild exon 501752 502569 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.2"; Scaffold005 rebuild exon 502645 502763 . - . gene_id "RvY_10002"; transcript_id "RvY_10002.2"; Scaffold005 rebuild transcript 503666 506739 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; gene_name "GLB1"; annotation "putative Beta-galactosidase"; Pfam "[BetaGal_dom4_5] Beta-galactosidase jelly roll domain|[Glyco_hydro_42] Beta-galactosidase|[Glyco_hydro_35] Glycosyl hydrolases family 35"; EC "EC3.2.1.23"; KO "K12309"; similar_genes "BGAL_MOUSE(e-value:1.4e-29;bit-score:127.0)"; Scaffold005 rebuild exon 503666 503725 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 503910 504100 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 504179 504329 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 504412 504570 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 504667 504847 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 504913 504994 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 505072 505200 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 505288 505417 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 505486 505758 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 505850 505967 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 506039 506277 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 506369 506428 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild exon 506545 506739 . + . gene_id "RvY_10003"; transcript_id "RvY_10003.1"; Scaffold005 rebuild transcript 507124 510846 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; gene_name "CLH"; annotation "putative Vacuolar protein sorting-associated protein 41 homolog"; Pfam "[Clathrin] Region in Clathrin and VPS"; CDD "Clathrin heavy chain repeat homology."; similar_genes "VPS41_HUMAN(e-value:1.0e-29;bit-score:128.0)"; Scaffold005 rebuild exon 507124 507393 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild exon 507455 507732 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild exon 507902 508412 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild exon 508683 509131 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild exon 509365 509848 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild exon 509909 510281 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild exon 510440 510846 . - . gene_id "RvY_10004"; transcript_id "RvY_10004.1"; Scaffold005 rebuild transcript 511833 513414 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; annotation "hypothetical protein."; Pfam "[EAF] RNA polymerase II transcription elongation factor"; KO "K15186"; Scaffold005 rebuild exon 511833 511932 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild exon 512064 512173 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild exon 512300 512448 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild exon 512521 512840 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild exon 512903 513073 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild exon 513149 513250 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild exon 513323 513414 . + . gene_id "RvY_10005"; transcript_id "RvY_10005.1"; Scaffold005 rebuild transcript 514259 516576 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; gene_name "TIGR02231"; annotation "hypothetical protein."; Pfam "[DUF4139]|[DUF4140] N-terminal domain of unknown function (DUF4140)"; CDD "conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown."; Scaffold005 rebuild exon 514259 514431 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild exon 514493 514706 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild exon 514771 514985 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild exon 515109 515241 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild exon 515494 515775 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild exon 515850 516089 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild exon 516151 516576 . + . gene_id "RvY_10006"; transcript_id "RvY_10006.1"; Scaffold005 rebuild transcript 517156 518428 . + . gene_id "RvY_10007"; transcript_id "RvY_10007.1"; gene_name "COG3380"; annotation "hypothetical protein."; Pfam "[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; CDD "Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]"; Scaffold005 rebuild exon 517156 517294 . + . gene_id "RvY_10007"; transcript_id "RvY_10007.1"; Scaffold005 rebuild exon 517357 517462 . + . gene_id "RvY_10007"; transcript_id "RvY_10007.1"; Scaffold005 rebuild exon 517567 518428 . + . gene_id "RvY_10007"; transcript_id "RvY_10007.1"; Scaffold005 rebuild transcript 518868 522270 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; gene_name "K00064"; annotation "D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]"; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; CDD "Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others."; EC "EC1.1.1.122"; KO "K00064"; Scaffold005 rebuild exon 518868 518925 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 519032 519169 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 519247 519333 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 519400 519494 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 519620 519781 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 519877 519949 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 520817 520947 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 521226 521387 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 521473 521743 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild exon 522068 522270 . - . gene_id "RvY_10008"; transcript_id "RvY_10008.1"; Scaffold005 rebuild transcript 522862 523651 . + . gene_id "RvY_10009"; transcript_id "RvY_10009.1"; gene_name "TCEB1"; annotation "putative Transcription elongation factor B polypeptide 1"; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain"; CDD "Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues."; KO "K03872"; similar_genes "ELOC_MOUSE(e-value:1.2e-45;bit-score:181.0)"; Scaffold005 rebuild exon 522862 523048 . + . gene_id "RvY_10009"; transcript_id "RvY_10009.1"; Scaffold005 rebuild exon 523114 523162 . + . gene_id "RvY_10009"; transcript_id "RvY_10009.1"; Scaffold005 rebuild exon 523448 523495 . + . gene_id "RvY_10009"; transcript_id "RvY_10009.1"; Scaffold005 rebuild exon 523558 523651 . + . gene_id "RvY_10009"; transcript_id "RvY_10009.1"; Scaffold005 rebuild transcript 524924 527707 . + . gene_id "RvY_10010"; transcript_id "RvY_10010.1"; gene_name "CHPF"; annotation "chondroitin polymerizing factor [EC:2.4.1.175 2.4.1.226]"; Pfam "[CHGN] Chondroitin N-acetylgalactosaminyltransferase"; EC "EC2.4.1.175|EC2.4.1.226"; KO "K00747"; Scaffold005 rebuild exon 524924 525811 . + . gene_id "RvY_10010"; transcript_id "RvY_10010.1"; Scaffold005 rebuild exon 525876 526421 . + . gene_id "RvY_10010"; transcript_id "RvY_10010.1"; Scaffold005 rebuild exon 526544 526949 . + . gene_id "RvY_10010"; transcript_id "RvY_10010.1"; Scaffold005 rebuild exon 527034 527707 . + . gene_id "RvY_10010"; transcript_id "RvY_10010.1"; Scaffold005 rebuild transcript 527983 532672 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; gene_name "CALCRL"; annotation "calcitonin receptor-like"; Pfam "[HRM] Hormone receptor domain|[7tm_2] 7 transmembrane receptor (Secretin family)"; KO "K04577"; Scaffold005 rebuild exon 527983 528321 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 528386 528484 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 528924 528965 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 529086 529244 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 529393 529464 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 529868 530093 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 530714 530772 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 531089 531307 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 531578 531634 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 531884 531933 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 532120 532236 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild exon 532501 532672 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.1"; Scaffold005 rebuild transcript 528726 532672 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; gene_name "CALCRL"; annotation "calcitonin receptor-like"; Pfam "[HRM] Hormone receptor domain|[7tm_2] 7 transmembrane receptor (Secretin family)"; KO "K04577"; Scaffold005 rebuild exon 528726 528965 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 529086 529244 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 529393 529464 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 529868 530093 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 530714 530772 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 531089 531307 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 531578 531634 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 531884 531933 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 532120 532236 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild exon 532501 532672 . - . gene_id "RvY_10011"; transcript_id "RvY_10011.2"; Scaffold005 rebuild transcript 531566 532060 . + . gene_id "RvY_10012"; transcript_id "RvY_10012.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 531566 532060 . + . gene_id "RvY_10012"; transcript_id "RvY_10012.1"; Scaffold005 rebuild transcript 537749 540136 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; gene_name "ACSS"; annotation "Acetyl-coenzyme A synthetase"; Pfam "[AMP-binding] AMP-binding enzyme|[DUF3448]"; CDD "acetyl-CoA synthetase; Provisional"; EC "EC6.2.1.1"; KO "K01895"; similar_genes "(1)ACSA_DROME(e-value:1.5e-79;bit-score:293.0)(2)ACSA_DROME(e-value:2.3e-76;bit-score:283.0)"; Scaffold005 rebuild exon 537749 538070 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 538128 538203 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 538277 538545 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 538663 538790 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 538871 539128 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 539212 539270 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 539375 539499 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 539626 539752 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 539824 539946 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild exon 540064 540136 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.1"; Scaffold005 rebuild transcript 537749 539950 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; gene_name "ACSS"; annotation "Acetyl-coenzyme A synthetase"; Pfam "[AMP-binding] AMP-binding enzyme|[DUF3448]"; CDD "acetyl-CoA synthetase; Provisional"; EC "EC6.2.1.1"; KO "K01895"; similar_genes "(1)ACSA_DROME(e-value:1.5e-79;bit-score:293.0)(2)ACSA_DROME(e-value:2.3e-76;bit-score:283.0)"; Scaffold005 rebuild exon 537749 538070 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 538128 538203 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 538277 538545 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 538663 538790 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 538871 539128 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 539212 539270 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 539375 539499 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 539626 539752 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild exon 539824 539950 . + . gene_id "RvY_10013"; transcript_id "RvY_10013.2"; Scaffold005 rebuild transcript 540158 541028 . + . gene_id "RvY_10014"; transcript_id "RvY_10014.1"; gene_name "ACSS"; annotation "putative Acetyl-coenzyme A synthetase, cytoplasmic"; Pfam "[DUF4009]|[AMP-binding] AMP-binding enzyme"; CDD "acetyl-CoA synthetase; Provisional"; EC "EC6.2.1.1"; KO "K01895"; similar_genes "ACSA_HUMAN(e-value:7.0e-48;bit-score:188.0)"; Scaffold005 rebuild exon 540158 540410 . + . gene_id "RvY_10014"; transcript_id "RvY_10014.1"; Scaffold005 rebuild exon 540501 540746 . + . gene_id "RvY_10014"; transcript_id "RvY_10014.1"; Scaffold005 rebuild exon 540829 541028 . + . gene_id "RvY_10014"; transcript_id "RvY_10014.1"; Scaffold005 rebuild transcript 542152 543224 . + . gene_id "RvY_10015"; transcript_id "RvY_10015.1"; gene_name "BCL2L1"; annotation "BCL2-like 1 (apoptosis regulator Bcl-X)"; Pfam "[Bcl-2] Apoptosis regulator proteins, Bcl-2 family"; CDD "Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting with their BH3 regions. Interfering with this heterodimeric interaction via small-molecule inhibitors may prove effective in targeting various cancers. This family also includes the Caenorhabditis elegans Bcl-2 homolog CED-9, which binds to CED-4, the C. Elegans homolog of mammalian Apaf-1. Apaf-1, however, does not seem to be inhibited by Bcl-2 directly."; KO "K04570"; Scaffold005 rebuild exon 542152 542566 . + . gene_id "RvY_10015"; transcript_id "RvY_10015.1"; Scaffold005 rebuild exon 542628 543022 . + . gene_id "RvY_10015"; transcript_id "RvY_10015.1"; Scaffold005 rebuild exon 543078 543224 . + . gene_id "RvY_10015"; transcript_id "RvY_10015.1"; Scaffold005 rebuild transcript 544985 545173 . + . gene_id "RvY_10016"; transcript_id "RvY_10016.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 544985 545173 . + . gene_id "RvY_10016"; transcript_id "RvY_10016.1"; Scaffold005 rebuild transcript 548901 549098 . + . gene_id "RvY_10017"; transcript_id "RvY_10017.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 548901 549098 . + . gene_id "RvY_10017"; transcript_id "RvY_10017.1"; Scaffold005 rebuild transcript 549210 549494 . + . gene_id "RvY_10018"; transcript_id "RvY_10018.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 549210 549494 . + . gene_id "RvY_10018"; transcript_id "RvY_10018.1"; Scaffold005 rebuild transcript 549705 553420 . - . gene_id "RvY_10019"; transcript_id "RvY_10019.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 549705 549857 . - . gene_id "RvY_10019"; transcript_id "RvY_10019.1"; Scaffold005 rebuild exon 551574 551887 . - . gene_id "RvY_10019"; transcript_id "RvY_10019.1"; Scaffold005 rebuild exon 552937 553420 . - . gene_id "RvY_10019"; transcript_id "RvY_10019.1"; Scaffold005 rebuild transcript 555958 556835 . + . gene_id "RvY_10020"; transcript_id "RvY_10020.1"; gene_name "RHOD_HSP67B2"; annotation "hypothetical protein."; Pfam "[Rhodanese] Rhodanese-like domain"; CDD "Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized."; Scaffold005 rebuild exon 555958 556195 . + . gene_id "RvY_10020"; transcript_id "RvY_10020.1"; Scaffold005 rebuild exon 556308 556466 . + . gene_id "RvY_10020"; transcript_id "RvY_10020.1"; Scaffold005 rebuild exon 556525 556684 . + . gene_id "RvY_10020"; transcript_id "RvY_10020.1"; Scaffold005 rebuild exon 556781 556835 . + . gene_id "RvY_10020"; transcript_id "RvY_10020.1"; Scaffold005 rebuild transcript 557543 558740 . - . gene_id "RvY_10021"; transcript_id "RvY_10021.1"; annotation "hypothetical protein."; Pfam "[BNIP3]"; Scaffold005 rebuild exon 557543 557639 . - . gene_id "RvY_10021"; transcript_id "RvY_10021.1"; Scaffold005 rebuild exon 557707 557817 . - . gene_id "RvY_10021"; transcript_id "RvY_10021.1"; Scaffold005 rebuild exon 557966 558103 . - . gene_id "RvY_10021"; transcript_id "RvY_10021.1"; Scaffold005 rebuild exon 558185 558386 . - . gene_id "RvY_10021"; transcript_id "RvY_10021.1"; Scaffold005 rebuild exon 558695 558740 . - . gene_id "RvY_10021"; transcript_id "RvY_10021.1"; Scaffold005 rebuild transcript 559352 565233 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; gene_name "NCKAP1"; annotation "Membrane-associated protein Hem"; Pfam "[Nckap1] Membrane-associated apoptosis protein"; KO "K05750"; similar_genes "HEM_DROME(e-value:1.3e-59;bit-score:227.0)"; Scaffold005 rebuild exon 559352 559456 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 559533 559643 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 559706 559855 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 559928 560070 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 560190 560280 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 560342 560479 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 561039 561087 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 561189 561399 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 561479 561575 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 561642 561816 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 561893 562134 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 562210 562358 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 562426 562488 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 562555 562744 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 562804 562949 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 563013 563144 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 563245 563360 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 563546 563877 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 563940 564033 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 564264 564346 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 564404 564484 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 564558 564651 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 564739 564903 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild exon 564965 565233 . + . gene_id "RvY_10022"; transcript_id "RvY_10022.1"; Scaffold005 rebuild transcript 565610 576491 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; annotation "hypothetical protein."; Pfam "[HRM] Hormone receptor domain|[7tm_2] 7 transmembrane receptor (Secretin family)"; similar_genes "CRFR1_XENLA(e-value:4.0e-10;bit-score:63.0)"; Scaffold005 rebuild exon 565610 565960 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 566244 566433 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 566496 566748 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 566908 566987 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 567064 567098 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 567180 567224 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 567592 567745 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 567809 567863 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 567957 568059 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 568143 568237 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 569139 569243 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 570863 571127 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild exon 576408 576491 . - . gene_id "RvY_10023"; transcript_id "RvY_10023.1"; Scaffold005 rebuild transcript 576439 578444 . + . gene_id "RvY_10024"; transcript_id "RvY_10024.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 576439 576514 . + . gene_id "RvY_10024"; transcript_id "RvY_10024.1"; Scaffold005 rebuild exon 578209 578444 . + . gene_id "RvY_10024"; transcript_id "RvY_10024.1"; Scaffold005 rebuild transcript 577301 577624 . - . gene_id "RvY_10025"; transcript_id "RvY_10025.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 577301 577624 . - . gene_id "RvY_10025"; transcript_id "RvY_10025.1"; Scaffold005 rebuild transcript 576840 577311 . - . gene_id "RvY_10025"; transcript_id "RvY_10025.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 576840 576919 . - . gene_id "RvY_10025"; transcript_id "RvY_10025.2"; Scaffold005 rebuild exon 577137 577311 . - . gene_id "RvY_10025"; transcript_id "RvY_10025.2"; Scaffold005 rebuild transcript 579344 580495 . - . gene_id "RvY_10026"; transcript_id "RvY_10026.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 579344 579437 . - . gene_id "RvY_10026"; transcript_id "RvY_10026.1"; Scaffold005 rebuild exon 579616 579862 . - . gene_id "RvY_10026"; transcript_id "RvY_10026.1"; Scaffold005 rebuild exon 579931 580495 . - . gene_id "RvY_10026"; transcript_id "RvY_10026.1"; Scaffold005 rebuild transcript 581820 594978 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; gene_name "KCNH2"; annotation "Potassium voltage-gated channel subfamily H member 7"; Pfam "[Ion_trans_2] Ion channel|[cNMP_binding] Cyclic nucleotide-binding domain|[PAS_9] PAS domain|[Ion_trans] Ion transport protein"; KO "K04905"; similar_genes "KCNH7_RAT(e-value:5.4e-120;bit-score:428.0)"; Scaffold005 rebuild exon 581820 581828 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 581923 582028 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 582166 582406 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 582474 582533 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 582642 582990 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 583243 583436 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 583513 583765 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 583837 584067 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 584298 584663 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 584958 585129 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 585331 585413 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 585782 585985 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 586670 586887 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 587093 587143 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 588070 588537 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 588962 589084 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 594284 594514 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild exon 594903 594978 . - . gene_id "RvY_10027"; transcript_id "RvY_10027.1"; Scaffold005 rebuild transcript 595712 596291 . - . gene_id "RvY_10028"; transcript_id "RvY_10028.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 595712 595989 . - . gene_id "RvY_10028"; transcript_id "RvY_10028.1"; Scaffold005 rebuild exon 596165 596291 . - . gene_id "RvY_10028"; transcript_id "RvY_10028.1"; Scaffold005 rebuild transcript 596685 596912 . - . gene_id "RvY_10029"; transcript_id "RvY_10029.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 596685 596912 . - . gene_id "RvY_10029"; transcript_id "RvY_10029.1"; Scaffold005 rebuild transcript 597707 601293 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; gene_name "3a01204"; annotation "putative Protein white"; Pfam "[ABC2_membrane_3] ABC-2 family transporter protein|[ABC2_membrane] ABC-2 type transporter|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "The Eye Pigment Precursor Transporter (EPP) Family protein."; similar_genes "WHITE_LUCCU(e-value:3.2e-33;bit-score:139.0)"; Scaffold005 rebuild exon 597707 598061 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 598144 598192 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 598338 598599 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 598741 598839 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 598924 598995 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 599069 599163 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 599269 599372 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 599433 599628 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 599742 599847 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 599933 600067 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 600135 600227 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 600303 600417 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 600487 600616 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 600693 600725 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 600804 600871 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 601046 601119 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild exon 601195 601293 . + . gene_id "RvY_10030"; transcript_id "RvY_10030.1"; Scaffold005 rebuild transcript 603346 607012 . + . gene_id "RvY_10031"; transcript_id "RvY_10031.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 603346 603359 . + . gene_id "RvY_10031"; transcript_id "RvY_10031.1"; Scaffold005 rebuild exon 603423 603877 . + . gene_id "RvY_10031"; transcript_id "RvY_10031.1"; Scaffold005 rebuild exon 604827 605140 . + . gene_id "RvY_10031"; transcript_id "RvY_10031.1"; Scaffold005 rebuild exon 606860 607012 . + . gene_id "RvY_10031"; transcript_id "RvY_10031.1"; Scaffold005 rebuild transcript 612404 618242 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; gene_name "RANBP2"; annotation "E3 SUMO-protein ligase RanBP2"; Pfam "[Ran_BP1] RanBP1 domain"; CDD "RanBP1 domain."; KO "K12172"; similar_genes "RBP1A_ARATH(e-value:1.2e-09;bit-score:61.0)"; Scaffold005 rebuild exon 612404 612497 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 612559 612917 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 612984 613347 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 613509 613573 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 613636 614032 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 614291 614791 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 615025 615288 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 615363 615782 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 615929 616228 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 616500 616964 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 617249 617476 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 617702 617847 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild exon 617925 618242 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.1"; Scaffold005 rebuild transcript 612404 616972 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; gene_name "RANBP2"; annotation "E3 SUMO-protein ligase RanBP2"; Pfam "[Ran_BP1] RanBP1 domain"; CDD "RanBP1 domain."; KO "K12172"; similar_genes "RBP1A_ARATH(e-value:1.2e-09;bit-score:61.0)"; Scaffold005 rebuild exon 612404 612497 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 612559 612917 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 612984 613347 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 613509 613573 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 613636 614032 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 614291 614791 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 615025 615288 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 615363 615782 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 615929 616228 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild exon 616500 616972 . + . gene_id "RvY_10032"; transcript_id "RvY_10032.2"; Scaffold005 rebuild transcript 618719 619046 . + . gene_id "RvY_10033"; transcript_id "RvY_10033.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold005 rebuild exon 618719 618775 . + . gene_id "RvY_10033"; transcript_id "RvY_10033.1"; Scaffold005 rebuild exon 618864 619046 . + . gene_id "RvY_10033"; transcript_id "RvY_10033.1"; Scaffold005 rebuild transcript 619216 620467 . + . gene_id "RvY_10034"; transcript_id "RvY_10034.1"; gene_name "FBXO39"; annotation "F-box protein 39"; KO "K10314"; Scaffold005 rebuild exon 619216 619313 . + . gene_id "RvY_10034"; transcript_id "RvY_10034.1"; Scaffold005 rebuild exon 619372 619802 . + . gene_id "RvY_10034"; transcript_id "RvY_10034.1"; Scaffold005 rebuild exon 619858 620000 . + . gene_id "RvY_10034"; transcript_id "RvY_10034.1"; Scaffold005 rebuild exon 620066 620467 . + . gene_id "RvY_10034"; transcript_id "RvY_10034.1"; Scaffold005 rebuild transcript 621502 622341 . + . gene_id "RvY_10035"; transcript_id "RvY_10035.1"; gene_name "COX5B"; annotation "cytochrome c oxidase subunit Vb [EC:1.9.3.1]"; Pfam "[COX5B] Cytochrome c oxidase subunit Vb"; CDD "Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly."; EC "EC1.9.3.1"; KO "K02265"; Scaffold005 rebuild exon 621502 621589 . + . gene_id "RvY_10035"; transcript_id "RvY_10035.1"; Scaffold005 rebuild exon 621762 621844 . + . gene_id "RvY_10035"; transcript_id "RvY_10035.1"; Scaffold005 rebuild exon 621981 622080 . + . gene_id "RvY_10035"; transcript_id "RvY_10035.1"; Scaffold005 rebuild exon 622214 622341 . + . gene_id "RvY_10035"; transcript_id "RvY_10035.1"; Scaffold005 rebuild transcript 622964 623901 . - . gene_id "RvY_10036"; transcript_id "RvY_10036.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 622964 623169 . - . gene_id "RvY_10036"; transcript_id "RvY_10036.1"; Scaffold005 rebuild exon 623633 623749 . - . gene_id "RvY_10036"; transcript_id "RvY_10036.1"; Scaffold005 rebuild exon 623790 623901 . - . gene_id "RvY_10036"; transcript_id "RvY_10036.1"; Scaffold005 rebuild transcript 624699 626707 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold005 rebuild exon 624699 624975 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild exon 625115 625405 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild exon 625482 625702 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild exon 625779 625847 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild exon 625930 626064 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild exon 626131 626449 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild exon 626514 626707 . + . gene_id "RvY_10037"; transcript_id "RvY_10037.1"; Scaffold005 rebuild transcript 626883 627449 . - . gene_id "RvY_10038"; transcript_id "RvY_10038.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 626883 627449 . - . gene_id "RvY_10038"; transcript_id "RvY_10038.1"; Scaffold005 rebuild transcript 626708 627040 . - . gene_id "RvY_10038"; transcript_id "RvY_10038.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 626708 627040 . - . gene_id "RvY_10038"; transcript_id "RvY_10038.2"; Scaffold005 rebuild transcript 627914 628857 . - . gene_id "RvY_10039"; transcript_id "RvY_10039.1"; gene_name "GCM"; annotation "Transcription factor glial cells missing 2"; Pfam "[GCM] GCM motif protein"; CDD "GCM motif protein."; similar_genes "GCM2_DROME(e-value:1.1e-52;bit-score:204.0)"; Scaffold005 rebuild exon 627914 628281 . - . gene_id "RvY_10039"; transcript_id "RvY_10039.1"; Scaffold005 rebuild exon 628486 628735 . - . gene_id "RvY_10039"; transcript_id "RvY_10039.1"; Scaffold005 rebuild exon 628810 628857 . - . gene_id "RvY_10039"; transcript_id "RvY_10039.1"; Scaffold005 rebuild transcript 631804 632745 . - . gene_id "RvY_10040"; transcript_id "RvY_10040.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 631804 632132 . - . gene_id "RvY_10040"; transcript_id "RvY_10040.1"; Scaffold005 rebuild exon 632377 632425 . - . gene_id "RvY_10040"; transcript_id "RvY_10040.1"; Scaffold005 rebuild exon 632494 632745 . - . gene_id "RvY_10040"; transcript_id "RvY_10040.1"; Scaffold005 rebuild transcript 633356 634133 . - . gene_id "RvY_10041"; transcript_id "RvY_10041.1"; gene_name "(1)gst"; annotation "(1)glutathione S-transferase [EC:2.5.1.18](2)hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "(1)GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 633356 633684 . - . gene_id "RvY_10041"; transcript_id "RvY_10041.1"; Scaffold005 rebuild exon 633767 633815 . - . gene_id "RvY_10041"; transcript_id "RvY_10041.1"; Scaffold005 rebuild exon 633882 634133 . - . gene_id "RvY_10041"; transcript_id "RvY_10041.1"; Scaffold005 rebuild transcript 633042 633389 . - . gene_id "RvY_10041"; transcript_id "RvY_10041.2"; gene_name "(1)gst"; annotation "(1)glutathione S-transferase [EC:2.5.1.18](2)hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "(1)GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 633042 633389 . - . gene_id "RvY_10041"; transcript_id "RvY_10041.2"; Scaffold005 rebuild transcript 634866 635947 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; gene_name "PHS1"; annotation "3-hydroxy acyl-CoA dehydratase [EC:4.2.1.-]"; Pfam "[PTPLA] Protein tyrosine phosphatase-like protein, PTPLA"; EC "EC4.2.1.-"; KO "K10703"; Scaffold005 rebuild exon 634866 634957 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; Scaffold005 rebuild exon 635039 635159 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; Scaffold005 rebuild exon 635225 635386 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; Scaffold005 rebuild exon 635460 635567 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; Scaffold005 rebuild exon 635667 635775 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; Scaffold005 rebuild exon 635889 635947 . - . gene_id "RvY_10042"; transcript_id "RvY_10042.1"; Scaffold005 rebuild transcript 637821 640060 . + . gene_id "RvY_10043"; transcript_id "RvY_10043.1"; gene_name "UhpC"; annotation "Sugar phosphate exchanger 2"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "Sugar phosphate permease [Carbohydrate transport and metabolism]"; KO "K13783"; similar_genes "SPX2_DANRE(e-value:1.1e-73;bit-score:274.0)"; Scaffold005 rebuild exon 637821 638002 . + . gene_id "RvY_10043"; transcript_id "RvY_10043.1"; Scaffold005 rebuild exon 638071 638417 . + . gene_id "RvY_10043"; transcript_id "RvY_10043.1"; Scaffold005 rebuild exon 638647 639081 . + . gene_id "RvY_10043"; transcript_id "RvY_10043.1"; Scaffold005 rebuild exon 639246 639521 . + . gene_id "RvY_10043"; transcript_id "RvY_10043.1"; Scaffold005 rebuild exon 639591 640060 . + . gene_id "RvY_10043"; transcript_id "RvY_10043.1"; Scaffold005 rebuild transcript 640391 641927 . - . gene_id "RvY_10044"; transcript_id "RvY_10044.1"; gene_name "SpoVK"; annotation "putative Katanin p60 ATPase-containing subunit A1"; Pfam "[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.6.4.3"; similar_genes "KTNA1_SALSA(e-value:5.4e-50;bit-score:195.0)"; Scaffold005 rebuild exon 640391 641121 . - . gene_id "RvY_10044"; transcript_id "RvY_10044.1"; Scaffold005 rebuild exon 641192 641927 . - . gene_id "RvY_10044"; transcript_id "RvY_10044.1"; Scaffold005 rebuild transcript 642163 643045 . - . gene_id "RvY_10045"; transcript_id "RvY_10045.1"; annotation "hypothetical protein."; Pfam "[DUF1168]"; similar_genes "PKRI1_XENLA(e-value:1.2e-17;bit-score:88.0)"; Scaffold005 rebuild exon 642163 642405 . - . gene_id "RvY_10045"; transcript_id "RvY_10045.1"; Scaffold005 rebuild exon 642529 642622 . - . gene_id "RvY_10045"; transcript_id "RvY_10045.1"; Scaffold005 rebuild exon 642727 642812 . - . gene_id "RvY_10045"; transcript_id "RvY_10045.1"; Scaffold005 rebuild exon 642926 643045 . - . gene_id "RvY_10045"; transcript_id "RvY_10045.1"; Scaffold005 rebuild transcript 643502 644272 . + . gene_id "RvY_10046"; transcript_id "RvY_10046.1"; annotation "hypothetical protein."; Pfam "[zf-UBP] Zn-finger in ubiquitin-hydrolases and other protein"; EC "EC3.5.1.98"; similar_genes "HDAC6_HUMAN(e-value:1.6e-11;bit-score:67.0)"; Scaffold005 rebuild exon 643502 643561 . + . gene_id "RvY_10046"; transcript_id "RvY_10046.1"; Scaffold005 rebuild exon 643698 643847 . + . gene_id "RvY_10046"; transcript_id "RvY_10046.1"; Scaffold005 rebuild exon 643915 644043 . + . gene_id "RvY_10046"; transcript_id "RvY_10046.1"; Scaffold005 rebuild exon 644177 644272 . + . gene_id "RvY_10046"; transcript_id "RvY_10046.1"; Scaffold005 rebuild transcript 644684 645352 . - . gene_id "RvY_10047"; transcript_id "RvY_10047.1"; gene_name "RPC11"; annotation "DNA-directed RNA polymerase III subunit C11 [EC:2.7.7.6]"; Pfam "[TFIIS_C] Transcription factor S-II (TFIIS)"; CDD "DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]"; EC "EC2.7.7.6"; KO "K03019"; Scaffold005 rebuild exon 644684 644808 . - . gene_id "RvY_10047"; transcript_id "RvY_10047.1"; Scaffold005 rebuild exon 644946 645030 . - . gene_id "RvY_10047"; transcript_id "RvY_10047.1"; Scaffold005 rebuild exon 645212 645352 . - . gene_id "RvY_10047"; transcript_id "RvY_10047.1"; Scaffold005 rebuild transcript 647109 647727 . + . gene_id "RvY_10048"; transcript_id "RvY_10048.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 647109 647538 . + . gene_id "RvY_10048"; transcript_id "RvY_10048.1"; Scaffold005 rebuild exon 647624 647727 . + . gene_id "RvY_10048"; transcript_id "RvY_10048.1"; Scaffold005 rebuild transcript 647835 648188 . + . gene_id "RvY_10049"; transcript_id "RvY_10049.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 647835 648188 . + . gene_id "RvY_10049"; transcript_id "RvY_10049.1"; Scaffold005 rebuild transcript 650722 655141 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; gene_name "rnc"; annotation "putative Ribonuclease 3"; Pfam "[Ribonuclease_3] Ribonuclease III domain|[dsrm] Double-stranded RNA binding motif"; CDD "ribonuclease III; Reviewed"; EC "EC3.1.26.3"; KO "K03685"; similar_genes "RNC_MOUSE(e-value:2.6e-26;bit-score:116.0)"; Scaffold005 rebuild exon 650722 650752 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 650839 650898 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 651008 651289 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 651364 651500 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 651580 651837 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 651925 652665 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 652970 653665 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 653739 653896 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 654119 654378 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 654442 654631 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild exon 654700 655141 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.1"; Scaffold005 rebuild transcript 650722 655141 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; gene_name "rnc"; annotation "putative Ribonuclease 3"; Pfam "[Ribonuclease_3] Ribonuclease III domain|[dsrm] Double-stranded RNA binding motif"; CDD "ribonuclease III; Reviewed"; EC "EC3.1.26.3"; KO "K03685"; similar_genes "RNC_MOUSE(e-value:2.6e-26;bit-score:116.0)"; Scaffold005 rebuild exon 650722 650752 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 650839 650898 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 651011 651289 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 651364 651500 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 651580 651837 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 651925 652665 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 652970 653665 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 653739 653896 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 654119 654378 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 654442 654631 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild exon 654700 655141 . + . gene_id "RvY_10050"; transcript_id "RvY_10050.2"; Scaffold005 rebuild transcript 655568 657126 . - . gene_id "RvY_10051"; transcript_id "RvY_10051.1"; gene_name "COG0790"; annotation "hypothetical protein."; Pfam "[Sel1] Sel1 repeat"; CDD "FOG: TPR repeat, SEL1 subfamily [General function prediction only]"; Scaffold005 rebuild exon 655568 656160 . - . gene_id "RvY_10051"; transcript_id "RvY_10051.1"; Scaffold005 rebuild exon 656380 656697 . - . gene_id "RvY_10051"; transcript_id "RvY_10051.1"; Scaffold005 rebuild exon 656772 657126 . - . gene_id "RvY_10051"; transcript_id "RvY_10051.1"; Scaffold005 rebuild transcript 659906 660377 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 659906 660048 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.1"; Scaffold005 rebuild exon 660179 660377 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.1"; Scaffold005 rebuild transcript 660024 660480 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 660024 660048 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.2"; Scaffold005 rebuild exon 660179 660480 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.2"; Scaffold005 rebuild transcript 660024 660480 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 660024 660048 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.3"; Scaffold005 rebuild exon 660182 660480 . + . gene_id "RvY_10052"; transcript_id "RvY_10052.3"; Scaffold005 rebuild transcript 660833 661630 . - . gene_id "RvY_10053"; transcript_id "RvY_10053.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C14] Caspase domain"; Scaffold005 rebuild exon 660833 661630 . - . gene_id "RvY_10053"; transcript_id "RvY_10053.1"; Scaffold005 rebuild transcript 662521 663638 . - . gene_id "RvY_10054"; transcript_id "RvY_10054.1"; gene_name "CASc"; annotation "hypothetical protein."; Pfam "[Peptidase_C14] Caspase domain"; CDD "Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the Scaffold005 rebuild exon 662521 663338 . - . gene_id "RvY_10054"; transcript_id "RvY_10054.1"; Scaffold005 rebuild exon 663401 663638 . - . gene_id "RvY_10054"; transcript_id "RvY_10054.1"; Scaffold005 rebuild transcript 663908 668499 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; gene_name "MTR4"; annotation "Superkiller viralicidic activity 2-like 2"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[DSHCT] DSHCT (NUC185) domain|[rRNA_proc-arch] rRNA-processing arch domain"; CDD "Superfamily II RNA helicase [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K12598"; similar_genes "SK2L2_HUMAN(e-value:1.4e-69;bit-score:260.0)"; Scaffold005 rebuild exon 663908 663960 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 664054 664158 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 664221 664552 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 664775 665127 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 665225 665335 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 665424 665630 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 665691 665863 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 665936 666086 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 666177 666302 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 666371 666472 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 666560 666882 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 666960 667164 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 667257 667375 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 667494 667590 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 667657 667834 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 667910 668300 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild exon 668382 668499 . - . gene_id "RvY_10055"; transcript_id "RvY_10055.1"; Scaffold005 rebuild transcript 669079 670169 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 669079 669152 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; Scaffold005 rebuild exon 669253 669354 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; Scaffold005 rebuild exon 669439 669473 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; Scaffold005 rebuild exon 669566 669685 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; Scaffold005 rebuild exon 669774 669974 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; Scaffold005 rebuild exon 670042 670169 . + . gene_id "RvY_10056"; transcript_id "RvY_10056.1"; Scaffold005 rebuild transcript 671101 671996 . - . gene_id "RvY_10057"; transcript_id "RvY_10057.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "glutathione s-transferase; Provisional"; EC "EC2.5.1.18"; KO "K00799"; similar_genes "GST6_CAEEL(e-value:1.4e-12;bit-score:71.0)"; Scaffold005 rebuild exon 671101 671235 . - . gene_id "RvY_10057"; transcript_id "RvY_10057.1"; Scaffold005 rebuild exon 671306 671508 . - . gene_id "RvY_10057"; transcript_id "RvY_10057.1"; Scaffold005 rebuild exon 671630 671696 . - . gene_id "RvY_10057"; transcript_id "RvY_10057.1"; Scaffold005 rebuild exon 671769 671996 . - . gene_id "RvY_10057"; transcript_id "RvY_10057.1"; Scaffold005 rebuild transcript 672625 674613 . - . gene_id "RvY_10058"; transcript_id "RvY_10058.1"; gene_name "STKc_AGC"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_AGC: Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the Scaffold005 rebuild exon 672625 672952 . - . gene_id "RvY_10058"; transcript_id "RvY_10058.1"; Scaffold005 rebuild exon 673148 673499 . - . gene_id "RvY_10058"; transcript_id "RvY_10058.1"; Scaffold005 rebuild exon 673605 673833 . - . gene_id "RvY_10058"; transcript_id "RvY_10058.1"; Scaffold005 rebuild exon 673946 674233 . - . gene_id "RvY_10058"; transcript_id "RvY_10058.1"; Scaffold005 rebuild exon 674326 674613 . - . gene_id "RvY_10058"; transcript_id "RvY_10058.1"; Scaffold005 rebuild transcript 675233 676012 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.1"; gene_name "(1)COX6A(2)Cyt_c_Oxidase_VIa"; annotation "(1)cytochrome c oxidase subunit VIa [EC:1.9.3.1](2)hypothetical protein."; Pfam "[COX6A] Cytochrome c oxidase subunit VIa"; CDD "Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip in CcO, depending on the presence of cardiolipin and palmitate."; EC "(1)EC1.9.3.1"; KO "(1)K02266"; similar_genes "(1)CX6A1_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold005 rebuild exon 675233 675383 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.1"; Scaffold005 rebuild exon 675575 675735 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.1"; Scaffold005 rebuild exon 675827 675842 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.1"; Scaffold005 rebuild exon 675921 676012 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.1"; Scaffold005 rebuild transcript 675233 675750 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.2"; gene_name "(1)COX6A(2)Cyt_c_Oxidase_VIa"; annotation "(1)cytochrome c oxidase subunit VIa [EC:1.9.3.1](2)hypothetical protein."; Pfam "[COX6A] Cytochrome c oxidase subunit VIa"; CDD "Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip in CcO, depending on the presence of cardiolipin and palmitate."; EC "(1)EC1.9.3.1"; KO "(1)K02266"; similar_genes "(1)CX6A1_MOUSE(e-value:2.8e-15;bit-score:80.0)"; Scaffold005 rebuild exon 675233 675383 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.2"; Scaffold005 rebuild exon 675575 675750 . + . gene_id "RvY_10059"; transcript_id "RvY_10059.2"; Scaffold005 rebuild transcript 676567 681020 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold005 rebuild exon 676567 678470 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild exon 678639 679445 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild exon 679524 679796 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild exon 679935 679991 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild exon 680114 680528 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild exon 680660 680799 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild exon 680882 681020 . - . gene_id "RvY_10060"; transcript_id "RvY_10060.1"; Scaffold005 rebuild transcript 683188 685987 . + . gene_id "RvY_10061"; transcript_id "RvY_10061.1"; gene_name "HSPA5"; annotation "Heat shock 70 kDa protein C"; Pfam "[HSP70] Hsp70 protein|[MreB_Mbl] MreB/Mbl protein"; KO "K09490"; similar_genes "HSP7C_CAEBR(e-value:1.1e-277;bit-score:952.0)"; Scaffold005 rebuild exon 683188 683342 . + . gene_id "RvY_10061"; transcript_id "RvY_10061.1"; Scaffold005 rebuild exon 683431 684047 . + . gene_id "RvY_10061"; transcript_id "RvY_10061.1"; Scaffold005 rebuild exon 684292 684527 . + . gene_id "RvY_10061"; transcript_id "RvY_10061.1"; Scaffold005 rebuild exon 684719 685190 . + . gene_id "RvY_10061"; transcript_id "RvY_10061.1"; Scaffold005 rebuild exon 685476 685987 . + . gene_id "RvY_10061"; transcript_id "RvY_10061.1"; Scaffold005 rebuild transcript 686506 687350 . - . gene_id "RvY_10062"; transcript_id "RvY_10062.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 686506 686849 . - . gene_id "RvY_10062"; transcript_id "RvY_10062.1"; Scaffold005 rebuild exon 686912 687350 . - . gene_id "RvY_10062"; transcript_id "RvY_10062.1"; Scaffold005 rebuild transcript 687786 688531 . - . gene_id "RvY_10063"; transcript_id "RvY_10063.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 687786 687946 . - . gene_id "RvY_10063"; transcript_id "RvY_10063.1"; Scaffold005 rebuild exon 688049 688204 . - . gene_id "RvY_10063"; transcript_id "RvY_10063.1"; Scaffold005 rebuild exon 688291 688531 . - . gene_id "RvY_10063"; transcript_id "RvY_10063.1"; Scaffold005 rebuild transcript 689117 697075 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[PACT_coil_coil] Pericentrin-AKAP-450 domain of centrosomal targeting protein"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold005 rebuild exon 689117 689511 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 689810 690391 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 690693 691115 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 691211 691267 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 691345 691857 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 692105 692615 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 692907 693224 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 693304 694009 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 694411 694508 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild exon 696479 697075 . - . gene_id "RvY_10064"; transcript_id "RvY_10064.1"; Scaffold005 rebuild transcript 697801 708275 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; gene_name "PRK12678"; annotation "hypothetical protein."; CDD "transcription termination factor Rho; Provisional"; Scaffold005 rebuild exon 697801 697938 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 698033 698373 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 698433 699287 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 699394 702468 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 702537 706885 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 706978 707737 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 707847 707921 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild exon 708005 708275 . - . gene_id "RvY_10065"; transcript_id "RvY_10065.1"; Scaffold005 rebuild transcript 708166 708339 . + . gene_id "RvY_10066"; transcript_id "RvY_10066.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 708166 708339 . + . gene_id "RvY_10066"; transcript_id "RvY_10066.1"; Scaffold005 rebuild transcript 709288 710214 . + . gene_id "RvY_10067"; transcript_id "RvY_10067.1"; annotation "hypothetical protein."; Pfam "[RyR]"; Scaffold005 rebuild exon 709288 709496 . + . gene_id "RvY_10067"; transcript_id "RvY_10067.1"; Scaffold005 rebuild exon 709696 710010 . + . gene_id "RvY_10067"; transcript_id "RvY_10067.1"; Scaffold005 rebuild exon 710079 710214 . + . gene_id "RvY_10067"; transcript_id "RvY_10067.1"; Scaffold005 rebuild transcript 710724 711852 . - . gene_id "RvY_10068"; transcript_id "RvY_10068.1"; gene_name "SDHB"; annotation "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial"; Pfam "[Fer4_18] 4Fe-4S dicluster domain|[Fer4_8] 4Fe-4S dicluster domain|[Fer4_17] 4Fe-4S dicluster domain|[Fer2_3] 2Fe-2S iron-sulfur cluster binding domain"; CDD "succinate dehydrogenase iron-sulfur subunit; Reviewed"; EC "EC1.3.5.1"; KO "K00235"; similar_genes "DHSB_XENLA(e-value:1.8e-61;bit-score:233.0)"; Scaffold005 rebuild exon 710724 711227 . - . gene_id "RvY_10068"; transcript_id "RvY_10068.1"; Scaffold005 rebuild exon 711379 711852 . - . gene_id "RvY_10068"; transcript_id "RvY_10068.1"; Scaffold005 rebuild transcript 712379 713298 . + . gene_id "RvY_10069"; transcript_id "RvY_10069.1"; gene_name "RP-S19e"; annotation "putative 40S ribosomal protein S19S"; Pfam "[Ribosomal_S19e] Ribosomal protein S19e"; KO "K02966"; similar_genes "RS19S_ASCSU(e-value:6.8e-44;bit-score:175.0)"; Scaffold005 rebuild exon 712379 712449 . + . gene_id "RvY_10069"; transcript_id "RvY_10069.1"; Scaffold005 rebuild exon 712508 712608 . + . gene_id "RvY_10069"; transcript_id "RvY_10069.1"; Scaffold005 rebuild exon 712733 712801 . + . gene_id "RvY_10069"; transcript_id "RvY_10069.1"; Scaffold005 rebuild exon 712876 712993 . + . gene_id "RvY_10069"; transcript_id "RvY_10069.1"; Scaffold005 rebuild exon 713199 713298 . + . gene_id "RvY_10069"; transcript_id "RvY_10069.1"; Scaffold005 rebuild transcript 714340 719438 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; gene_name "NR_DBD_like"; annotation "hypothetical protein."; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "NHR91_CAEEL(e-value:8.7e-06;bit-score:48.0)"; Scaffold005 rebuild exon 714340 714701 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 716263 716467 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 716651 716827 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 716909 717273 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 717675 718472 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 718793 718945 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 719038 719179 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild exon 719307 719438 . - . gene_id "RvY_10070"; transcript_id "RvY_10070.1"; Scaffold005 rebuild transcript 720931 722588 . - . gene_id "RvY_10071"; transcript_id "RvY_10071.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 720931 721737 . - . gene_id "RvY_10071"; transcript_id "RvY_10071.1"; Scaffold005 rebuild exon 721884 722588 . - . gene_id "RvY_10071"; transcript_id "RvY_10071.1"; Scaffold005 rebuild transcript 723613 727099 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; annotation "hypothetical protein."; Pfam "[WW]"; Scaffold005 rebuild exon 723613 723638 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 723758 723860 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 723923 724472 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 724594 724697 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 724843 725039 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 725102 725295 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 725399 725647 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 725733 725789 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 726070 726175 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 726259 726490 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 726568 726695 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild exon 726814 727099 . + . gene_id "RvY_10072"; transcript_id "RvY_10072.1"; Scaffold005 rebuild transcript 727894 730947 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; gene_name "TUBA"; annotation "Tubulin alpha-1A chain"; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Tubulin_C] Tubulin C-terminal domain"; CDD "The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins."; KO "K07374"; similar_genes "TBA1A_PANTR(e-value:3.8e-267;bit-score:916.0)"; Scaffold005 rebuild exon 727894 727896 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 728659 728881 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 729136 729437 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 729591 729839 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 729904 729987 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 730175 730369 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 730569 730836 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild exon 730916 730947 . + . gene_id "RvY_10073"; transcript_id "RvY_10073.1"; Scaffold005 rebuild transcript 731599 732298 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.1"; annotation "hypothetical protein."; Pfam "[Ig_2] Immunoglobulin domain"; Scaffold005 rebuild exon 731599 731726 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.1"; Scaffold005 rebuild exon 731809 732059 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.1"; Scaffold005 rebuild exon 732138 732298 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.1"; Scaffold005 rebuild transcript 731266 731697 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.2"; annotation "hypothetical protein."; Pfam "[Ig_2] Immunoglobulin domain"; Scaffold005 rebuild exon 731266 731527 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.2"; Scaffold005 rebuild exon 731603 731697 . - . gene_id "RvY_10074"; transcript_id "RvY_10074.2"; Scaffold005 rebuild transcript 734307 737581 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; annotation "hypothetical protein."; Pfam "[APG9] Autophagy protein Apg9"; similar_genes "ATG9A_BOVIN(e-value:8.5e-21;bit-score:98.0)"; Scaffold005 rebuild exon 734307 734542 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; Scaffold005 rebuild exon 734702 735031 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; Scaffold005 rebuild exon 735125 735552 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; Scaffold005 rebuild exon 735681 736004 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; Scaffold005 rebuild exon 736292 736834 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; Scaffold005 rebuild exon 737112 737581 . + . gene_id "RvY_10075"; transcript_id "RvY_10075.1"; Scaffold005 rebuild transcript 738272 741202 . - . gene_id "RvY_10076"; transcript_id "RvY_10076.1"; annotation "hypothetical protein."; Pfam "[CBF_beta] Core binding factor beta subunit"; similar_genes "BRO_DROME(e-value:8.7e-06;bit-score:48.0)"; Scaffold005 rebuild exon 738272 738307 . - . gene_id "RvY_10076"; transcript_id "RvY_10076.1"; Scaffold005 rebuild exon 738675 738791 . - . gene_id "RvY_10076"; transcript_id "RvY_10076.1"; Scaffold005 rebuild exon 740328 740450 . - . gene_id "RvY_10076"; transcript_id "RvY_10076.1"; Scaffold005 rebuild exon 740669 741202 . - . gene_id "RvY_10076"; transcript_id "RvY_10076.1"; Scaffold005 rebuild transcript 746788 747186 . - . gene_id "RvY_10077"; transcript_id "RvY_10077.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 746788 747186 . - . gene_id "RvY_10077"; transcript_id "RvY_10077.1"; Scaffold005 rebuild transcript 747233 747454 . - . gene_id "RvY_10078"; transcript_id "RvY_10078.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 747233 747454 . - . gene_id "RvY_10078"; transcript_id "RvY_10078.1"; Scaffold005 rebuild transcript 748371 748583 . + . gene_id "RvY_10079"; transcript_id "RvY_10079.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 748371 748583 . + . gene_id "RvY_10079"; transcript_id "RvY_10079.1"; Scaffold005 rebuild transcript 749261 749560 . + . gene_id "RvY_10080"; transcript_id "RvY_10080.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 749261 749560 . + . gene_id "RvY_10080"; transcript_id "RvY_10080.1"; Scaffold005 rebuild transcript 749594 750019 . - . gene_id "RvY_10081"; transcript_id "RvY_10081.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 749594 750019 . - . gene_id "RvY_10081"; transcript_id "RvY_10081.1"; Scaffold005 rebuild transcript 751042 751991 . + . gene_id "RvY_10082"; transcript_id "RvY_10082.1"; annotation "hypothetical protein."; Pfam "[HORMA]"; Scaffold005 rebuild exon 751042 751120 . + . gene_id "RvY_10082"; transcript_id "RvY_10082.1"; Scaffold005 rebuild exon 751237 751383 . + . gene_id "RvY_10082"; transcript_id "RvY_10082.1"; Scaffold005 rebuild exon 751453 751576 . + . gene_id "RvY_10082"; transcript_id "RvY_10082.1"; Scaffold005 rebuild exon 751664 751991 . + . gene_id "RvY_10082"; transcript_id "RvY_10082.1"; Scaffold005 rebuild transcript 752307 754342 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; gene_name "UAP56"; annotation "ATP-dependent RNA helicase DDX39"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K12812"; similar_genes "DDX39_MOUSE(e-value:7.7e-183;bit-score:636.0)"; Scaffold005 rebuild exon 752307 752545 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild exon 752615 752793 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild exon 753015 753151 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild exon 753251 753605 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild exon 753680 753767 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild exon 753950 754030 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild exon 754117 754342 . - . gene_id "RvY_10083"; transcript_id "RvY_10083.1"; Scaffold005 rebuild transcript 754834 755370 . + . gene_id "RvY_10084"; transcript_id "RvY_10084.1"; gene_name "PRK06461"; annotation "hypothetical protein."; Pfam "[tRNA_anti] OB-fold nucleic acid binding domain"; CDD "single-stranded DNA-binding protein; Reviewed"; similar_genes "SOSB2_RAT(e-value:5.1e-08;bit-score:56.0)"; Scaffold005 rebuild exon 754834 755370 . + . gene_id "RvY_10084"; transcript_id "RvY_10084.1"; Scaffold005 rebuild transcript 755667 761927 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; gene_name "(1)FPGT(2)FCP1_euk"; annotation "(1)fucose-1-phosphate guanylyltransferase [EC:2.7.7.30](2)hypothetical protein."; Pfam "(2)[BRCT] BRCA1 C Terminus (BRCT) domain|(1)[MOFRL] MOFRL family|(2)[NIF] NLI interacting factor-like phosphatase|(1)[DUF4147]|(1)[Fucokinase] L-fucokinase|(2)[PTCB-BRCT] twin BRCT domain"; CDD "(1)Putative glycerate kinase [Carbohydrate transport and metabolism](2)FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031."; EC "(1)EC2.7.1.31|EC2.7.7.30(2)EC3.1.3.16"; KO "(1)K00976(2)K15732"; similar_genes "(1)GLCTK_MACFA(e-value:1.6e-13;bit-score:74.0)(2)CTDP1_MOUSE(e-value:2.1e-13;bit-score:74.0)"; Scaffold005 rebuild exon 755667 756825 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; Scaffold005 rebuild exon 756889 757963 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; Scaffold005 rebuild exon 758077 758577 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; Scaffold005 rebuild exon 758647 758808 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; Scaffold005 rebuild exon 758910 759098 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; Scaffold005 rebuild exon 761852 761927 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.1"; Scaffold005 rebuild transcript 759498 761549 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.2"; gene_name "(1)FPGT(2)FCP1_euk"; annotation "(1)fucose-1-phosphate guanylyltransferase [EC:2.7.7.30](2)hypothetical protein."; Pfam "(2)[BRCT] BRCA1 C Terminus (BRCT) domain|(1)[MOFRL] MOFRL family|(2)[NIF] NLI interacting factor-like phosphatase|(1)[DUF4147]|(1)[Fucokinase] L-fucokinase|(2)[PTCB-BRCT] twin BRCT domain"; CDD "(1)Putative glycerate kinase [Carbohydrate transport and metabolism](2)FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031."; EC "(1)EC2.7.1.31|EC2.7.7.30(2)EC3.1.3.16"; KO "(1)K00976(2)K15732"; similar_genes "(1)GLCTK_MACFA(e-value:1.6e-13;bit-score:74.0)(2)CTDP1_MOUSE(e-value:2.1e-13;bit-score:74.0)"; Scaffold005 rebuild exon 759498 761549 . - . gene_id "RvY_10085"; transcript_id "RvY_10085.2"; Scaffold005 rebuild transcript 764596 765265 . - . gene_id "RvY_10086"; transcript_id "RvY_10086.1"; annotation "hypothetical protein."; Pfam "[Tmemb_18A] Transmembrane protein 188"; Scaffold005 rebuild exon 764596 764680 . - . gene_id "RvY_10086"; transcript_id "RvY_10086.1"; Scaffold005 rebuild exon 764776 764959 . - . gene_id "RvY_10086"; transcript_id "RvY_10086.1"; Scaffold005 rebuild exon 765026 765097 . - . gene_id "RvY_10086"; transcript_id "RvY_10086.1"; Scaffold005 rebuild exon 765175 765265 . - . gene_id "RvY_10086"; transcript_id "RvY_10086.1"; Scaffold005 rebuild transcript 764938 765311 . + . gene_id "RvY_10087"; transcript_id "RvY_10087.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 764938 765053 . + . gene_id "RvY_10087"; transcript_id "RvY_10087.1"; Scaffold005 rebuild exon 765089 765311 . + . gene_id "RvY_10087"; transcript_id "RvY_10087.1"; Scaffold005 rebuild transcript 769709 773383 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; gene_name "GALNT"; annotation "Polypeptide N-acetylgalactosaminyltransferase 5"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[RicinB_lectin_2] Ricin-type beta-trefoil lectin domain-like|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; KO "K00710"; similar_genes "GALT5_CAEEL(e-value:2.3e-76;bit-score:283.0)"; Scaffold005 rebuild exon 769709 769981 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 770310 770503 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 770614 770668 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 770815 771006 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 771098 771310 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 771592 771626 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 771720 771894 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 771955 772096 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 772167 772210 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 772268 772396 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 772713 772811 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 772885 772966 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild exon 773175 773383 . + . gene_id "RvY_10088"; transcript_id "RvY_10088.1"; Scaffold005 rebuild transcript 774016 777069 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; gene_name "pp-GalNAc-T"; annotation "Polypeptide N-acetylgalactosaminyltransferase 5"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; similar_genes "GALT5_CAEEL(e-value:4.7e-85;bit-score:312.0)"; Scaffold005 rebuild exon 774016 774276 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 774359 774481 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 774556 774578 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 774654 774723 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 774837 775151 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 775248 775277 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 775363 775542 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 775642 775787 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 775871 776114 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 776296 776365 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 776454 776499 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild exon 776610 777069 . - . gene_id "RvY_10089"; transcript_id "RvY_10089.1"; Scaffold005 rebuild transcript 778827 781421 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; annotation "Coiled-coil domain-containing protein 93"; Pfam "[KOG2701] Coiled-coil domain-containing protein (DUF2037)"; similar_genes "CCD93_CHICK(e-value:1.1e-52;bit-score:204.0)"; Scaffold005 rebuild exon 778827 778868 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 778942 779140 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 779207 779327 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 779408 779585 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 779657 779947 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 780032 780274 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 780376 780499 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 780591 780956 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 781023 781117 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 781193 781306 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild exon 781413 781421 . - . gene_id "RvY_10090"; transcript_id "RvY_10090.1"; Scaffold005 rebuild transcript 781776 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.1"; product "DNA ligase 4"; gene_name "dnl1"; annotation "DNA ligase 4 | hypothetical protein."; Pfam "[DNA_ligase_A_N] DNA ligase N terminus"; CDD "DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; Scaffold005 rebuild exon 781776 782348 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.1"; Scaffold005 rebuild exon 782409 782574 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.1"; Scaffold005 rebuild exon 782640 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.1"; Scaffold005 rebuild transcript 781854 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.2"; product "DNA ligase 4"; gene_name "dnl1"; annotation "DNA ligase 4 | hypothetical protein."; Pfam "[DNA_ligase_A_N] DNA ligase N terminus"; CDD "DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; Scaffold005 rebuild exon 781854 782348 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.2"; Scaffold005 rebuild exon 782409 782574 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.2"; Scaffold005 rebuild exon 782640 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.2"; Scaffold005 rebuild transcript 781902 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.3"; product "DNA ligase 4"; gene_name "dnl1"; annotation "DNA ligase 4 | hypothetical protein."; Pfam "[DNA_ligase_A_N] DNA ligase N terminus"; CDD "DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; Scaffold005 rebuild exon 781902 782348 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.3"; Scaffold005 rebuild exon 782409 782574 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.3"; Scaffold005 rebuild exon 782640 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.3"; Scaffold005 rebuild transcript 782010 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.4"; product "DNA ligase 4"; gene_name "dnl1"; annotation "DNA ligase 4 | hypothetical protein."; Pfam "[DNA_ligase_A_N] DNA ligase N terminus"; CDD "DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; Scaffold005 rebuild exon 782010 782348 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.4"; Scaffold005 rebuild exon 782409 782574 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.4"; Scaffold005 rebuild exon 782640 782833 . + . gene_id "RvY_10091"; transcript_id "RvY_10091.4"; Scaffold005 rebuild transcript 784613 786458 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; product "DNA ligase 4"; annotation "DNA ligase 4 | hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain"; Scaffold005 rebuild exon 784613 784660 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 784725 784929 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 784994 785207 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 785300 785438 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 785669 785751 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 785830 785994 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 786068 786254 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild exon 786447 786458 . + . gene_id "RvY_10092"; transcript_id "RvY_10092.1"; Scaffold005 rebuild transcript 786754 793165 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; gene_name "CRHR1"; annotation "corticotropin releasing hormone receptor 1"; Pfam "[HRM] Hormone receptor domain|[7tm_2] 7 transmembrane receptor (Secretin family)"; KO "K04578"; Scaffold005 rebuild exon 786754 786776 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 787207 787424 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 789374 789487 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 790852 790952 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 791064 791309 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 791650 791857 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 792006 792133 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 792213 792238 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 792462 792693 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild exon 792830 793165 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.1"; Scaffold005 rebuild transcript 787208 793165 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; gene_name "CRHR1"; annotation "corticotropin releasing hormone receptor 1"; Pfam "[HRM] Hormone receptor domain|[7tm_2] 7 transmembrane receptor (Secretin family)"; KO "K04578"; Scaffold005 rebuild exon 787208 787424 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 789374 789487 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 790852 790952 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 791064 791309 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 791650 791857 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 792006 792133 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 792213 792238 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 792462 792693 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild exon 792830 793165 . + . gene_id "RvY_10093"; transcript_id "RvY_10093.2"; Scaffold005 rebuild transcript 793775 795486 . + . gene_id "RvY_10094"; transcript_id "RvY_10094.1"; annotation "hypothetical protein."; similar_genes "ZMY10_MOUSE(e-value:3.9e-08;bit-score:56.0)"; Scaffold005 rebuild exon 793775 793875 . + . gene_id "RvY_10094"; transcript_id "RvY_10094.1"; Scaffold005 rebuild exon 794685 795252 . + . gene_id "RvY_10094"; transcript_id "RvY_10094.1"; Scaffold005 rebuild exon 795334 795486 . + . gene_id "RvY_10094"; transcript_id "RvY_10094.1"; Scaffold005 rebuild transcript 795658 795858 . + . gene_id "RvY_10095"; transcript_id "RvY_10095.1"; annotation "hypothetical protein."; Pfam "[zf-MYND] MYND finger"; Scaffold005 rebuild exon 795658 795858 . + . gene_id "RvY_10095"; transcript_id "RvY_10095.1"; Scaffold005 rebuild transcript 796245 797777 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; gene_name "RRM"; annotation "putative Glycine-rich protein 2b"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[zf-CCHC] Zinc knuckle|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold005 rebuild exon 796245 796251 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 796309 796444 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 796510 796650 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 796720 796802 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 797000 797153 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 797235 797264 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 797329 797363 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild exon 797668 797777 . - . gene_id "RvY_10096"; transcript_id "RvY_10096.1"; Scaffold005 rebuild transcript 798416 800526 . + . gene_id "RvY_10097"; transcript_id "RvY_10097.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 798416 798882 . + . gene_id "RvY_10097"; transcript_id "RvY_10097.1"; Scaffold005 rebuild exon 799257 800526 . + . gene_id "RvY_10097"; transcript_id "RvY_10097.1"; Scaffold005 rebuild transcript 800964 801437 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.1"; gene_name "(2)NDUFS5"; annotation "(1)hypothetical protein.(2)NADH dehydrogenase (ubiquinone) Fe-S protein 5 [EC:1.6.5.3 1.6.99.3]"; Pfam "[Ndufs5] NADH:ubiquinone oxidoreductase, NDUFS5-15kDa"; EC "(2)EC1.6.5.3|EC1.6.99.3"; KO "(2)K03938"; Scaffold005 rebuild exon 800964 800986 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.1"; Scaffold005 rebuild exon 801092 801437 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.1"; Scaffold005 rebuild transcript 800696 801196 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.2"; gene_name "(2)NDUFS5"; annotation "(1)hypothetical protein.(2)NADH dehydrogenase (ubiquinone) Fe-S protein 5 [EC:1.6.5.3 1.6.99.3]"; Pfam "[Ndufs5] NADH:ubiquinone oxidoreductase, NDUFS5-15kDa"; EC "(2)EC1.6.5.3|EC1.6.99.3"; KO "(2)K03938"; Scaffold005 rebuild exon 800696 800815 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.2"; Scaffold005 rebuild exon 800882 800986 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.2"; Scaffold005 rebuild exon 801092 801196 . - . gene_id "RvY_10098"; transcript_id "RvY_10098.2"; Scaffold005 rebuild transcript 801614 803792 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; gene_name "WD40"; annotation "putative Protein TSSC1"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "TSSC1_GECJA(e-value:9.1e-29;bit-score:125.0)"; Scaffold005 rebuild exon 801614 801655 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 801842 801925 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 802133 802265 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 802380 802545 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 802628 802727 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 802888 803024 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 803096 803419 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild exon 803630 803792 . + . gene_id "RvY_10099"; transcript_id "RvY_10099.1"; Scaffold005 rebuild transcript 806900 807789 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 806900 807035 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.1"; Scaffold005 rebuild exon 807114 807198 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.1"; Scaffold005 rebuild exon 807258 807789 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.1"; Scaffold005 rebuild transcript 807161 808247 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 807161 807198 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.2"; Scaffold005 rebuild exon 807258 807538 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.2"; Scaffold005 rebuild exon 807624 807800 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.2"; Scaffold005 rebuild exon 808075 808247 . + . gene_id "RvY_10100"; transcript_id "RvY_10100.2"; Scaffold005 rebuild transcript 810962 811360 . - . gene_id "RvY_10101"; transcript_id "RvY_10101.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 810962 811360 . - . gene_id "RvY_10101"; transcript_id "RvY_10101.1"; Scaffold005 rebuild transcript 811321 811662 . - . gene_id "RvY_10101"; transcript_id "RvY_10101.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 811321 811662 . - . gene_id "RvY_10101"; transcript_id "RvY_10101.2"; Scaffold005 rebuild transcript 812853 813466 . + . gene_id "RvY_10102"; transcript_id "RvY_10102.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 812853 812983 . + . gene_id "RvY_10102"; transcript_id "RvY_10102.1"; Scaffold005 rebuild exon 813385 813466 . + . gene_id "RvY_10102"; transcript_id "RvY_10102.1"; Scaffold005 rebuild transcript 814973 815296 . - . gene_id "RvY_10103"; transcript_id "RvY_10103.2"; gene_name "HLH"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; Scaffold005 rebuild exon 814973 815296 . - . gene_id "RvY_10103"; transcript_id "RvY_10103.2"; Scaffold005 rebuild transcript 822184 822510 . + . gene_id "RvY_10104"; transcript_id "RvY_10104.1"; gene_name "ID"; annotation "inhibitor of DNA binding, dominant negative helix-loop-helix protein"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K04680"; Scaffold005 rebuild exon 822184 822510 . + . gene_id "RvY_10104"; transcript_id "RvY_10104.1"; Scaffold005 rebuild transcript 823443 823736 . + . gene_id "RvY_10105"; transcript_id "RvY_10105.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 823443 823736 . + . gene_id "RvY_10105"; transcript_id "RvY_10105.1"; Scaffold005 rebuild transcript 824811 825271 . - . gene_id "RvY_10106"; transcript_id "RvY_10106.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 824811 825049 . - . gene_id "RvY_10106"; transcript_id "RvY_10106.1"; Scaffold005 rebuild exon 825112 825271 . - . gene_id "RvY_10106"; transcript_id "RvY_10106.1"; Scaffold005 rebuild transcript 825846 830185 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; annotation "hypothetical protein."; Pfam "[zf-C2HC] Zinc finger, C2HC type"; similar_genes "MYT1L_MOUSE(e-value:1.2e-09;bit-score:61.0)"; Scaffold005 rebuild exon 825846 826228 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 826382 826611 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 826696 826758 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 826826 826948 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 827024 827203 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 827321 827800 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 828079 828184 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 829020 829060 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 829478 829550 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 829704 830055 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild exon 830168 830185 . - . gene_id "RvY_10107"; transcript_id "RvY_10107.1"; Scaffold005 rebuild transcript 833632 838652 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; gene_name "RhoGAP_ARHGAP27_15_12_9"; annotation "hypothetical protein."; Pfam "[PH]|[RhoGAP]"; CDD "RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold005 rebuild exon 833632 833715 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 833775 833886 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 833950 834055 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 834150 834356 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 834438 834539 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 834852 835137 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 835399 835533 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 835619 835720 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 835956 836075 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 836149 836616 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 837363 837542 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 837909 838151 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild exon 838215 838652 . - . gene_id "RvY_10108"; transcript_id "RvY_10108.1"; Scaffold005 rebuild transcript 839996 840776 . - . gene_id "RvY_10109"; transcript_id "RvY_10109.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 839996 840126 . - . gene_id "RvY_10109"; transcript_id "RvY_10109.1"; Scaffold005 rebuild exon 840156 840594 . - . gene_id "RvY_10109"; transcript_id "RvY_10109.1"; Scaffold005 rebuild exon 840660 840776 . - . gene_id "RvY_10109"; transcript_id "RvY_10109.1"; Scaffold005 rebuild transcript 841642 842712 . + . gene_id "RvY_10110"; transcript_id "RvY_10110.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold005 rebuild exon 841642 842712 . + . gene_id "RvY_10110"; transcript_id "RvY_10110.1"; Scaffold005 rebuild transcript 842962 843278 . + . gene_id "RvY_10111"; transcript_id "RvY_10111.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold005 rebuild exon 842962 843126 . + . gene_id "RvY_10111"; transcript_id "RvY_10111.1"; Scaffold005 rebuild exon 843138 843278 . + . gene_id "RvY_10111"; transcript_id "RvY_10111.1"; Scaffold005 rebuild transcript 844245 845254 . - . gene_id "RvY_10112"; transcript_id "RvY_10112.1"; gene_name "(1)SNIP1"; annotation "(1)Smad nuclear interacting protein 1(2)hypothetical protein."; Pfam "[FHA]"; CDD "(1)Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation)."; KO "(1)K13108"; similar_genes "(1)SNIP1_RAT(e-value:6.9e-63;bit-score:238.0)"; Scaffold005 rebuild exon 844245 845132 . - . gene_id "RvY_10112"; transcript_id "RvY_10112.1"; Scaffold005 rebuild exon 845228 845254 . - . gene_id "RvY_10112"; transcript_id "RvY_10112.1"; Scaffold005 rebuild transcript 843815 844309 . - . gene_id "RvY_10112"; transcript_id "RvY_10112.2"; gene_name "(1)SNIP1"; annotation "(1)Smad nuclear interacting protein 1(2)hypothetical protein."; Pfam "[FHA]"; CDD "(1)Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation)."; KO "(1)K13108"; similar_genes "(1)SNIP1_RAT(e-value:6.9e-63;bit-score:238.0)"; Scaffold005 rebuild exon 843815 844309 . - . gene_id "RvY_10112"; transcript_id "RvY_10112.2"; Scaffold005 rebuild transcript 846259 847257 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; annotation "hypothetical protein."; Pfam "[zf-U11-48K] U11-48K-like CHHC zinc finger"; Scaffold005 rebuild exon 846259 846364 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; Scaffold005 rebuild exon 846448 846614 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; Scaffold005 rebuild exon 846714 846827 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; Scaffold005 rebuild exon 846902 846973 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; Scaffold005 rebuild exon 847058 847111 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; Scaffold005 rebuild exon 847231 847257 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.1"; Scaffold005 rebuild transcript 846143 846531 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.2"; annotation "hypothetical protein."; Pfam "[zf-U11-48K] U11-48K-like CHHC zinc finger"; Scaffold005 rebuild exon 846143 846364 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.2"; Scaffold005 rebuild exon 846448 846531 . - . gene_id "RvY_10113"; transcript_id "RvY_10113.2"; Scaffold005 rebuild transcript 850346 851182 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 850346 850387 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.1"; Scaffold005 rebuild exon 850482 850626 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.1"; Scaffold005 rebuild exon 850689 850761 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.1"; Scaffold005 rebuild exon 850873 851182 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.1"; Scaffold005 rebuild transcript 850333 851182 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 850333 850387 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.2"; Scaffold005 rebuild exon 850482 850626 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.2"; Scaffold005 rebuild exon 850734 850760 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.2"; Scaffold005 rebuild exon 850873 851182 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.2"; Scaffold005 rebuild transcript 850928 851452 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 850928 851132 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.3"; Scaffold005 rebuild exon 851211 851452 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.3"; Scaffold005 rebuild transcript 850928 851516 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.4"; annotation "hypothetical protein."; Scaffold005 rebuild exon 850928 851132 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.4"; Scaffold005 rebuild exon 851211 851423 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.4"; Scaffold005 rebuild exon 851503 851516 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.4"; Scaffold005 rebuild transcript 850333 850934 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.5"; annotation "hypothetical protein."; Scaffold005 rebuild exon 850333 850387 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.5"; Scaffold005 rebuild exon 850482 850760 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.5"; Scaffold005 rebuild exon 850873 850934 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.5"; Scaffold005 rebuild transcript 850346 850934 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.6"; annotation "hypothetical protein."; Scaffold005 rebuild exon 850346 850387 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.6"; Scaffold005 rebuild exon 850482 850626 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.6"; Scaffold005 rebuild exon 850689 850760 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.6"; Scaffold005 rebuild exon 850873 850934 . + . gene_id "RvY_10114"; transcript_id "RvY_10114.6"; Scaffold005 rebuild transcript 851648 853346 . - . gene_id "RvY_10115"; transcript_id "RvY_10115.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 851648 851891 . - . gene_id "RvY_10115"; transcript_id "RvY_10115.1"; Scaffold005 rebuild exon 852040 852403 . - . gene_id "RvY_10115"; transcript_id "RvY_10115.1"; Scaffold005 rebuild exon 852653 853043 . - . gene_id "RvY_10115"; transcript_id "RvY_10115.1"; Scaffold005 rebuild exon 853182 853346 . - . gene_id "RvY_10115"; transcript_id "RvY_10115.1"; Scaffold005 rebuild transcript 854643 854834 . - . gene_id "RvY_10116"; transcript_id "RvY_10116.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 854643 854834 . - . gene_id "RvY_10116"; transcript_id "RvY_10116.1"; Scaffold005 rebuild transcript 856266 862466 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; gene_name "mam_aldehyde_ox"; annotation "hypothetical protein."; Pfam "[Fer2] 2Fe-2S iron-sulfur cluster binding domain|[Ald_Xan_dh_C2] Molybdopterin-binding domain of aldehyde dehydrogenase|[Ald_Xan_dh_C] Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain|[CO_deh_flav_C] CO dehydrogenase flavoprotein C-terminal domain|[FAD_binding_5] FAD binding domain in molybdopterin dehydrogenase|[Fer2_2] [2Fe-2S] binding domain"; CDD "aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase."; EC "EC1.17.1.4"; similar_genes "XDH_MOUSE(e-value:5.3e-12;bit-score:69.0)"; Scaffold005 rebuild exon 856266 856341 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 856408 856577 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 856694 856851 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 856935 857017 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 857084 857163 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 857242 857676 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 857751 857853 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 857944 858080 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 858181 858297 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 858411 858578 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 858642 858926 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 858982 859126 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 859427 859769 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 859843 859947 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 860017 860210 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 860289 860758 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 861001 861129 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 861186 861334 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 861406 861554 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 861796 861999 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 862201 862317 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild exon 862393 862466 . + . gene_id "RvY_10117"; transcript_id "RvY_10117.1"; Scaffold005 rebuild transcript 862898 863170 . + . gene_id "RvY_10118"; transcript_id "RvY_10118.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 862898 863170 . + . gene_id "RvY_10118"; transcript_id "RvY_10118.1"; Scaffold005 rebuild transcript 863167 863876 . - . gene_id "RvY_10119"; transcript_id "RvY_10119.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 863167 863500 . - . gene_id "RvY_10119"; transcript_id "RvY_10119.1"; Scaffold005 rebuild exon 863590 863876 . - . gene_id "RvY_10119"; transcript_id "RvY_10119.1"; Scaffold005 rebuild transcript 865725 867297 . + . gene_id "RvY_10120"; transcript_id "RvY_10120.1"; gene_name "K00683"; annotation "glutaminyl-peptide cyclotransferase [EC:2.3.2.5]"; Pfam "[Peptidase_M28] Peptidase family M28"; EC "EC2.3.2.-|EC2.3.2.5"; KO "K00683"; similar_genes "QPCTL_MACFA(e-value:2.0e-09;bit-score:60.0)"; Scaffold005 rebuild exon 865725 865758 . + . gene_id "RvY_10120"; transcript_id "RvY_10120.1"; Scaffold005 rebuild exon 865944 866173 . + . gene_id "RvY_10120"; transcript_id "RvY_10120.1"; Scaffold005 rebuild exon 866515 867297 . + . gene_id "RvY_10120"; transcript_id "RvY_10120.1"; Scaffold005 rebuild transcript 868194 876352 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; gene_name "DAPK"; annotation "death-associated protein kinase [EC:2.7.11.1]"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Death]|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1|EC2.7.11.18"; KO "K08803"; similar_genes "MYLK_CHICK(e-value:5.0e-21;bit-score:99.0)"; Scaffold005 rebuild exon 868194 868264 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild exon 870761 870982 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild exon 871843 871980 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild exon 872091 872408 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild exon 872726 873208 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild exon 873406 873638 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild exon 873843 876352 . + . gene_id "RvY_10121"; transcript_id "RvY_10121.1"; Scaffold005 rebuild transcript 876838 877662 . + . gene_id "RvY_10122"; transcript_id "RvY_10122.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 876838 877662 . + . gene_id "RvY_10122"; transcript_id "RvY_10122.1"; Scaffold005 rebuild transcript 877002 877727 . - . gene_id "RvY_10123"; transcript_id "RvY_10123.1"; gene_name "BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold005 rebuild exon 877002 877727 . - . gene_id "RvY_10123"; transcript_id "RvY_10123.1"; Scaffold005 rebuild transcript 879169 880983 . + . gene_id "RvY_10124"; transcript_id "RvY_10124.1"; gene_name "ESRRBL1"; annotation "estrogen-related receptor beta like 1"; Pfam "[IFT57] Intra-flagellar transport protein 57"; KO "K04638"; Scaffold005 rebuild exon 879169 879437 . + . gene_id "RvY_10124"; transcript_id "RvY_10124.1"; Scaffold005 rebuild exon 879549 879717 . + . gene_id "RvY_10124"; transcript_id "RvY_10124.1"; Scaffold005 rebuild exon 879820 880212 . + . gene_id "RvY_10124"; transcript_id "RvY_10124.1"; Scaffold005 rebuild exon 880279 880449 . + . gene_id "RvY_10124"; transcript_id "RvY_10124.1"; Scaffold005 rebuild exon 880645 880983 . + . gene_id "RvY_10124"; transcript_id "RvY_10124.1"; Scaffold005 rebuild transcript 881345 882826 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; annotation "putative Down syndrome critical region protein 3 homolog"; Pfam "[Arrestin_N] Arrestin (or S-antigen), N-terminal domain|[Vps26] Vacuolar protein sorting-associated protein 26"; similar_genes "DSCR3_DICDI(e-value:6.0e-28;bit-score:122.0)"; Scaffold005 rebuild exon 881345 881430 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild exon 881505 881808 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild exon 882001 882075 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild exon 882137 882217 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild exon 882294 882443 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild exon 882509 882649 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild exon 882755 882826 . - . gene_id "RvY_10125"; transcript_id "RvY_10125.1"; Scaffold005 rebuild transcript 883171 884852 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; gene_name "paaG"; annotation "enoyl-CoA hydratase [EC:4.2.1.17]"; Pfam "[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "enoyl-CoA hydratase; Provisional"; EC "EC4.2.1.17"; KO "K01692"; Scaffold005 rebuild exon 883171 883372 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; Scaffold005 rebuild exon 883447 883626 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; Scaffold005 rebuild exon 883715 883951 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; Scaffold005 rebuild exon 884035 884184 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; Scaffold005 rebuild exon 884295 884468 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; Scaffold005 rebuild exon 884758 884852 . + . gene_id "RvY_10126"; transcript_id "RvY_10126.1"; Scaffold005 rebuild transcript 886112 886800 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 886112 886169 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.1"; Scaffold005 rebuild exon 886418 886800 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.1"; Scaffold005 rebuild transcript 885925 886681 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 885925 885964 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.2"; Scaffold005 rebuild exon 886078 886169 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.2"; Scaffold005 rebuild exon 886418 886681 . + . gene_id "RvY_10127"; transcript_id "RvY_10127.2"; Scaffold005 rebuild transcript 886940 889583 . - . gene_id "RvY_10128"; transcript_id "RvY_10128.1"; gene_name "DCX"; annotation "hypothetical protein."; Pfam "[DCX] Doublecortin"; CDD "DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females."; Scaffold005 rebuild exon 886940 886977 . - . gene_id "RvY_10128"; transcript_id "RvY_10128.1"; Scaffold005 rebuild exon 887050 887975 . - . gene_id "RvY_10128"; transcript_id "RvY_10128.1"; Scaffold005 rebuild exon 888184 888600 . - . gene_id "RvY_10128"; transcript_id "RvY_10128.1"; Scaffold005 rebuild exon 888902 888978 . - . gene_id "RvY_10128"; transcript_id "RvY_10128.1"; Scaffold005 rebuild exon 889065 889583 . - . gene_id "RvY_10128"; transcript_id "RvY_10128.1"; Scaffold005 rebuild transcript 889764 890453 . - . gene_id "RvY_10129"; transcript_id "RvY_10129.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 889764 890453 . - . gene_id "RvY_10129"; transcript_id "RvY_10129.1"; Scaffold005 rebuild transcript 890700 891107 . - . gene_id "RvY_10130"; transcript_id "RvY_10130.1"; gene_name "DCX"; annotation "hypothetical protein."; Pfam "[DCX] Doublecortin"; CDD "DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females."; Scaffold005 rebuild exon 890700 891107 . - . gene_id "RvY_10130"; transcript_id "RvY_10130.1"; Scaffold005 rebuild transcript 891401 891998 . - . gene_id "RvY_10131"; transcript_id "RvY_10131.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 891401 891637 . - . gene_id "RvY_10131"; transcript_id "RvY_10131.1"; Scaffold005 rebuild exon 891726 891998 . - . gene_id "RvY_10131"; transcript_id "RvY_10131.1"; Scaffold005 rebuild transcript 893308 893734 . + . gene_id "RvY_10132"; transcript_id "RvY_10132.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 893308 893392 . + . gene_id "RvY_10132"; transcript_id "RvY_10132.1"; Scaffold005 rebuild exon 893481 893734 . + . gene_id "RvY_10132"; transcript_id "RvY_10132.1"; Scaffold005 rebuild transcript 894012 895816 . - . gene_id "RvY_10133"; transcript_id "RvY_10133.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; similar_genes "KCNA4_RAT(e-value:6.5e-21;bit-score:99.0)"; Scaffold005 rebuild exon 894012 894178 . - . gene_id "RvY_10133"; transcript_id "RvY_10133.1"; Scaffold005 rebuild exon 894244 894930 . - . gene_id "RvY_10133"; transcript_id "RvY_10133.1"; Scaffold005 rebuild exon 895111 895436 . - . gene_id "RvY_10133"; transcript_id "RvY_10133.1"; Scaffold005 rebuild exon 895503 895816 . - . gene_id "RvY_10133"; transcript_id "RvY_10133.1"; Scaffold005 rebuild transcript 895289 895831 . + . gene_id "RvY_10134"; transcript_id "RvY_10134.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 895289 895432 . + . gene_id "RvY_10134"; transcript_id "RvY_10134.1"; Scaffold005 rebuild exon 895499 895831 . + . gene_id "RvY_10134"; transcript_id "RvY_10134.1"; Scaffold005 rebuild transcript 895176 895430 . + . gene_id "RvY_10134"; transcript_id "RvY_10134.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 895176 895430 . + . gene_id "RvY_10134"; transcript_id "RvY_10134.2"; Scaffold005 rebuild transcript 896581 898100 . - . gene_id "RvY_10135"; transcript_id "RvY_10135.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; similar_genes "KCNA6_MOUSE(e-value:6.1e-13;bit-score:72.0)"; Scaffold005 rebuild exon 896581 896729 . - . gene_id "RvY_10135"; transcript_id "RvY_10135.1"; Scaffold005 rebuild exon 896808 896940 . - . gene_id "RvY_10135"; transcript_id "RvY_10135.1"; Scaffold005 rebuild exon 897003 898100 . - . gene_id "RvY_10135"; transcript_id "RvY_10135.1"; Scaffold005 rebuild transcript 899364 902718 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; gene_name "GYG1"; annotation "Glycogenin-2"; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases."; EC "EC2.4.1.186"; KO "K00750"; similar_genes "GLYG2_HUMAN(e-value:5.4e-67;bit-score:252.0)"; Scaffold005 rebuild exon 899364 899376 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild exon 899505 899637 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild exon 900121 900295 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild exon 900435 900597 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild exon 900669 900795 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild exon 900867 901029 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild exon 901324 902718 . + . gene_id "RvY_10136"; transcript_id "RvY_10136.1"; Scaffold005 rebuild transcript 903134 904587 . - . gene_id "RvY_10137"; transcript_id "RvY_10137.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold005 rebuild exon 903134 904013 . - . gene_id "RvY_10137"; transcript_id "RvY_10137.1"; Scaffold005 rebuild exon 904166 904587 . - . gene_id "RvY_10137"; transcript_id "RvY_10137.1"; Scaffold005 rebuild transcript 904733 905557 . - . gene_id "RvY_10138"; transcript_id "RvY_10138.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 904733 905557 . - . gene_id "RvY_10138"; transcript_id "RvY_10138.1"; Scaffold005 rebuild transcript 907726 911321 . + . gene_id "RvY_10139"; transcript_id "RvY_10139.1"; gene_name "IHPK"; annotation "inositol-hexakisphosphate kinase [EC:2.7.4.21]"; Pfam "[IPK] Inositol polyphosphate kinase"; EC "EC2.7.4.21"; KO "K07756"; similar_genes "IP6K3_MOUSE(e-value:1.1e-18;bit-score:91.0)"; Scaffold005 rebuild exon 907726 908077 . + . gene_id "RvY_10139"; transcript_id "RvY_10139.1"; Scaffold005 rebuild exon 908552 908843 . + . gene_id "RvY_10139"; transcript_id "RvY_10139.1"; Scaffold005 rebuild exon 908998 909137 . + . gene_id "RvY_10139"; transcript_id "RvY_10139.1"; Scaffold005 rebuild exon 910173 910348 . + . gene_id "RvY_10139"; transcript_id "RvY_10139.1"; Scaffold005 rebuild exon 910836 911321 . + . gene_id "RvY_10139"; transcript_id "RvY_10139.1"; Scaffold005 rebuild transcript 912418 913951 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; annotation "hypothetical protein."; Pfam "[NIPSNAP]"; similar_genes "NIPSN_DROME(e-value:1.7e-19;bit-score:94.0)"; Scaffold005 rebuild exon 912418 912485 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 912557 912795 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 912893 912938 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 913008 913102 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 913166 913236 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 913303 913443 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 913508 913539 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 913612 913790 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild exon 913887 913951 . + . gene_id "RvY_10140"; transcript_id "RvY_10140.1"; Scaffold005 rebuild transcript 914468 915497 . + . gene_id "RvY_10141"; transcript_id "RvY_10141.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 914468 914972 . + . gene_id "RvY_10141"; transcript_id "RvY_10141.1"; Scaffold005 rebuild exon 915082 915497 . + . gene_id "RvY_10141"; transcript_id "RvY_10141.1"; Scaffold005 rebuild transcript 915788 916911 . - . gene_id "RvY_10142"; transcript_id "RvY_10142.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 915788 916289 . - . gene_id "RvY_10142"; transcript_id "RvY_10142.1"; Scaffold005 rebuild exon 916490 916911 . - . gene_id "RvY_10142"; transcript_id "RvY_10142.1"; Scaffold005 rebuild transcript 918113 919711 . - . gene_id "RvY_10143"; transcript_id "RvY_10143.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 918113 918328 . - . gene_id "RvY_10143"; transcript_id "RvY_10143.1"; Scaffold005 rebuild exon 918417 918521 . - . gene_id "RvY_10143"; transcript_id "RvY_10143.1"; Scaffold005 rebuild exon 918592 918779 . - . gene_id "RvY_10143"; transcript_id "RvY_10143.1"; Scaffold005 rebuild exon 919184 919244 . - . gene_id "RvY_10143"; transcript_id "RvY_10143.1"; Scaffold005 rebuild exon 919571 919711 . - . gene_id "RvY_10143"; transcript_id "RvY_10143.1"; Scaffold005 rebuild transcript 918668 919074 . + . gene_id "RvY_10144"; transcript_id "RvY_10144.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 918668 918739 . + . gene_id "RvY_10144"; transcript_id "RvY_10144.1"; Scaffold005 rebuild exon 919027 919074 . + . gene_id "RvY_10144"; transcript_id "RvY_10144.1"; Scaffold005 rebuild transcript 921461 923301 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 921461 921547 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; Scaffold005 rebuild exon 921837 921953 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; Scaffold005 rebuild exon 922043 922400 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; Scaffold005 rebuild exon 922655 922758 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; Scaffold005 rebuild exon 922885 923069 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; Scaffold005 rebuild exon 923136 923301 . + . gene_id "RvY_10145"; transcript_id "RvY_10145.1"; Scaffold005 rebuild transcript 923682 924917 . - . gene_id "RvY_10146"; transcript_id "RvY_10146.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain"; Scaffold005 rebuild exon 923682 924030 . - . gene_id "RvY_10146"; transcript_id "RvY_10146.1"; Scaffold005 rebuild exon 924334 924917 . - . gene_id "RvY_10146"; transcript_id "RvY_10146.1"; Scaffold005 rebuild transcript 925495 925821 . + . gene_id "RvY_10147"; transcript_id "RvY_10147.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 925495 925821 . + . gene_id "RvY_10147"; transcript_id "RvY_10147.1"; Scaffold005 rebuild transcript 929320 932386 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; gene_name "acyloxyacyl_hydrolase_like"; annotation "hypothetical protein."; Pfam "[Lipase_GDSL_2] GDSL-like Lipase/Acylhydrolase family|[Lipase_GDSL] GDSL-like Lipase/Acylhydrolase"; CDD "Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides."; EC "EC3.1.1.77"; similar_genes "AOAH_MOUSE(e-value:8.1e-15;bit-score:78.0)"; Scaffold005 rebuild exon 929320 929452 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 929678 929834 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 929964 930249 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 930426 930496 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 930601 930649 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 930723 930936 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 930999 931149 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 931214 931288 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 931507 931801 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 931887 931989 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 932079 932155 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild exon 932258 932386 . + . gene_id "RvY_10148"; transcript_id "RvY_10148.1"; Scaffold005 rebuild transcript 932468 933661 . - . gene_id "RvY_10149"; transcript_id "RvY_10149.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 932468 932525 . - . gene_id "RvY_10149"; transcript_id "RvY_10149.1"; Scaffold005 rebuild exon 932613 932788 . - . gene_id "RvY_10149"; transcript_id "RvY_10149.1"; Scaffold005 rebuild exon 932854 932983 . - . gene_id "RvY_10149"; transcript_id "RvY_10149.1"; Scaffold005 rebuild exon 933218 933345 . - . gene_id "RvY_10149"; transcript_id "RvY_10149.1"; Scaffold005 rebuild exon 933455 933661 . - . gene_id "RvY_10149"; transcript_id "RvY_10149.1"; Scaffold005 rebuild transcript 934334 936362 . - . gene_id "RvY_10150"; transcript_id "RvY_10150.1"; gene_name "SLU7"; annotation "Pre-mRNA-splicing factor SLU7"; Pfam "[Slu7] Pre-mRNA splicing Prp18-interacting factor"; KO "K12819"; similar_genes "SLU7_DANRE(e-value:1.1e-56;bit-score:217.0)"; Scaffold005 rebuild exon 934334 935880 . - . gene_id "RvY_10150"; transcript_id "RvY_10150.1"; Scaffold005 rebuild exon 936065 936362 . - . gene_id "RvY_10150"; transcript_id "RvY_10150.1"; Scaffold005 rebuild transcript 936760 937392 . + . gene_id "RvY_10151"; transcript_id "RvY_10151.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 936760 937064 . + . gene_id "RvY_10151"; transcript_id "RvY_10151.1"; Scaffold005 rebuild exon 937206 937392 . + . gene_id "RvY_10151"; transcript_id "RvY_10151.1"; Scaffold005 rebuild transcript 937599 937808 . - . gene_id "RvY_10152"; transcript_id "RvY_10152.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 937599 937808 . - . gene_id "RvY_10152"; transcript_id "RvY_10152.1"; Scaffold005 rebuild transcript 938084 938257 . - . gene_id "RvY_10153"; transcript_id "RvY_10153.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 938084 938257 . - . gene_id "RvY_10153"; transcript_id "RvY_10153.1"; Scaffold005 rebuild transcript 939007 939848 . - . gene_id "RvY_10154"; transcript_id "RvY_10154.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 939007 939428 . - . gene_id "RvY_10154"; transcript_id "RvY_10154.1"; Scaffold005 rebuild exon 939662 939848 . - . gene_id "RvY_10154"; transcript_id "RvY_10154.1"; Scaffold005 rebuild transcript 942061 944668 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; gene_name "MIP"; annotation "hypothetical protein."; Pfam "[MIP] Major intrinsic protein"; CDD "Major intrinsic protein. MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators."; Scaffold005 rebuild exon 942061 942097 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; Scaffold005 rebuild exon 942364 942663 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; Scaffold005 rebuild exon 942754 942852 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; Scaffold005 rebuild exon 942918 943048 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; Scaffold005 rebuild exon 944308 944388 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; Scaffold005 rebuild exon 944471 944668 . + . gene_id "RvY_10155"; transcript_id "RvY_10155.1"; Scaffold005 rebuild transcript 944773 948201 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; gene_name "TELO2"; annotation "telomere length regulation protein"; Pfam "[Telomere_reg-2] Telomere length regulation protein"; KO "K11137"; Scaffold005 rebuild exon 944773 945017 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 945110 945225 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 945305 945558 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 945643 945765 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 945842 946122 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 946185 946491 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 946562 946701 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 946797 946944 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 947026 947094 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 947158 947566 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 947628 947819 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild exon 947894 948201 . - . gene_id "RvY_10156"; transcript_id "RvY_10156.1"; Scaffold005 rebuild transcript 948631 949605 . - . gene_id "RvY_10157"; transcript_id "RvY_10157.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 948631 948826 . - . gene_id "RvY_10157"; transcript_id "RvY_10157.1"; Scaffold005 rebuild exon 948887 949605 . - . gene_id "RvY_10157"; transcript_id "RvY_10157.1"; Scaffold005 rebuild transcript 950418 951407 . + . gene_id "RvY_10158"; transcript_id "RvY_10158.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 950418 951407 . + . gene_id "RvY_10158"; transcript_id "RvY_10158.1"; Scaffold005 rebuild transcript 951576 953424 . - . gene_id "RvY_10159"; transcript_id "RvY_10159.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 951576 952138 . - . gene_id "RvY_10159"; transcript_id "RvY_10159.1"; Scaffold005 rebuild exon 952200 953424 . - . gene_id "RvY_10159"; transcript_id "RvY_10159.1"; Scaffold005 rebuild transcript 953819 955964 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; annotation "hypothetical protein."; Pfam "[Peptidase_C1] Papain family cysteine protease|[Inhibitor_I29] Cathepsin propeptide inhibitor domain (I29)"; EC "EC3.4.22.43"; similar_genes "CATL2_HUMAN(e-value:5.6e-20;bit-score:95.0)"; Scaffold005 rebuild exon 953819 953852 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 953931 954092 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 954150 954322 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 954422 954650 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 954715 955109 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 955177 955449 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 955509 955866 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild exon 955939 955964 . + . gene_id "RvY_10160"; transcript_id "RvY_10160.1"; Scaffold005 rebuild transcript 959674 960473 . + . gene_id "RvY_10161"; transcript_id "RvY_10161.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 959674 959704 . + . gene_id "RvY_10161"; transcript_id "RvY_10161.1"; Scaffold005 rebuild exon 959983 960473 . + . gene_id "RvY_10161"; transcript_id "RvY_10161.1"; Scaffold005 rebuild transcript 961347 966622 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; gene_name "ATPase-IIC_X-K"; annotation "Sodium/potassium-transporting ATPase subunit alpha"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps."; EC "EC3.6.3.9"; similar_genes "AT1A_TAESO(e-value:9.5e-52;bit-score:201.0)"; Scaffold005 rebuild exon 961347 961467 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 961569 961670 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 961757 961791 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 961859 961954 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 962022 962237 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 962314 962364 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 962440 962594 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 962661 962762 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 962967 963326 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 963648 964020 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 964083 964324 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 964423 964624 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 964700 964722 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 964798 965158 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 965363 965611 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 965672 965881 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 965946 966005 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 966071 966223 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild exon 966299 966622 . - . gene_id "RvY_10162"; transcript_id "RvY_10162.1"; Scaffold005 rebuild transcript 967463 969798 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; gene_name "galU"; annotation "UTP--glucose-1-phosphate uridylyltransferase"; Pfam "[UDPGP] UTP--glucose-1-phosphate uridylyltransferase"; EC "EC2.7.7.9"; KO "K00963"; similar_genes "UGPA_CRIGR(e-value:2.8e-51;bit-score:199.0)"; Scaffold005 rebuild exon 967463 967520 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; Scaffold005 rebuild exon 967581 968196 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; Scaffold005 rebuild exon 968267 968400 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; Scaffold005 rebuild exon 968531 968685 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; Scaffold005 rebuild exon 968981 969274 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; Scaffold005 rebuild exon 969505 969798 . + . gene_id "RvY_10163"; transcript_id "RvY_10163.1"; Scaffold005 rebuild transcript 970299 971407 . - . gene_id "RvY_10164"; transcript_id "RvY_10164.1"; annotation "hypothetical protein."; Pfam "[CHCH]"; similar_genes "MIA40_HUMAN(e-value:3.8e-23;bit-score:106.0)"; Scaffold005 rebuild exon 970299 970636 . - . gene_id "RvY_10164"; transcript_id "RvY_10164.1"; Scaffold005 rebuild exon 970855 970959 . - . gene_id "RvY_10164"; transcript_id "RvY_10164.1"; Scaffold005 rebuild exon 971074 971407 . - . gene_id "RvY_10164"; transcript_id "RvY_10164.1"; Scaffold005 rebuild transcript 971677 972976 . + . gene_id "RvY_10165"; transcript_id "RvY_10165.1"; gene_name "CCNH"; annotation "cyclin H"; Pfam "[Cyclin_N] Cyclin, N-terminal domain"; CDD "cyclin ccl1. University)."; KO "K06634"; Scaffold005 rebuild exon 971677 972090 . + . gene_id "RvY_10165"; transcript_id "RvY_10165.1"; Scaffold005 rebuild exon 972242 972584 . + . gene_id "RvY_10165"; transcript_id "RvY_10165.1"; Scaffold005 rebuild exon 972654 972976 . + . gene_id "RvY_10165"; transcript_id "RvY_10165.1"; Scaffold005 rebuild transcript 973252 973458 . - . gene_id "RvY_10166"; transcript_id "RvY_10166.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 973252 973458 . - . gene_id "RvY_10166"; transcript_id "RvY_10166.1"; Scaffold005 rebuild transcript 974054 975915 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; gene_name "RNASEH2B"; annotation "ribonuclease H2 subunit B"; Pfam "[RNase_H2-Ydr279] Ydr279p protein family (RNase H2 complex component)"; KO "K10744"; Scaffold005 rebuild exon 974054 974144 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 974290 974388 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 974501 974685 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 974753 974897 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 974970 975034 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 975155 975254 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 975324 975405 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 975500 975557 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 975643 975726 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild exon 975811 975915 . + . gene_id "RvY_10167"; transcript_id "RvY_10167.1"; Scaffold005 rebuild transcript 976039 977581 . - . gene_id "RvY_10168"; transcript_id "RvY_10168.1"; gene_name "DnaJ_bact"; annotation "putative DnaJ homolog subfamily C member 25 homolog"; Pfam "[DnaJ]"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; similar_genes "DJC25_DROME(e-value:4.3e-37;bit-score:152.0)"; Scaffold005 rebuild exon 976039 976164 . - . gene_id "RvY_10168"; transcript_id "RvY_10168.1"; Scaffold005 rebuild exon 976370 977053 . - . gene_id "RvY_10168"; transcript_id "RvY_10168.1"; Scaffold005 rebuild exon 977250 977344 . - . gene_id "RvY_10168"; transcript_id "RvY_10168.1"; Scaffold005 rebuild exon 977470 977581 . - . gene_id "RvY_10168"; transcript_id "RvY_10168.1"; Scaffold005 rebuild transcript 980258 981412 . - . gene_id "RvY_10169"; transcript_id "RvY_10169.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 980258 981412 . - . gene_id "RvY_10169"; transcript_id "RvY_10169.1"; Scaffold005 rebuild transcript 982209 983102 . - . gene_id "RvY_10170"; transcript_id "RvY_10170.1"; gene_name "PKCI_related"; annotation "putative Histidine triad nucleotide-binding protein 2, mitochondrial"; Pfam "[HIT]|[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members."; EC "EC3.-.-.-"; similar_genes "HINT2_MOUSE(e-value:2.7e-32;bit-score:136.0)"; Scaffold005 rebuild exon 982209 982300 . - . gene_id "RvY_10170"; transcript_id "RvY_10170.1"; Scaffold005 rebuild exon 982389 982518 . - . gene_id "RvY_10170"; transcript_id "RvY_10170.1"; Scaffold005 rebuild exon 982622 982804 . - . gene_id "RvY_10170"; transcript_id "RvY_10170.1"; Scaffold005 rebuild exon 982989 983102 . - . gene_id "RvY_10170"; transcript_id "RvY_10170.1"; Scaffold005 rebuild transcript 984012 986946 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 984012 984065 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild exon 984145 984413 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild exon 984471 984657 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild exon 984729 985094 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild exon 985361 985531 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild exon 985605 985687 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild exon 986589 986946 . - . gene_id "RvY_10171"; transcript_id "RvY_10171.1"; Scaffold005 rebuild transcript 987969 988190 . + . gene_id "RvY_10172"; transcript_id "RvY_10172.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 987969 988190 . + . gene_id "RvY_10172"; transcript_id "RvY_10172.1"; Scaffold005 rebuild transcript 991240 991446 . - . gene_id "RvY_10173"; transcript_id "RvY_10173.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 991240 991446 . - . gene_id "RvY_10173"; transcript_id "RvY_10173.1"; Scaffold005 rebuild transcript 992766 993496 . - . gene_id "RvY_10174"; transcript_id "RvY_10174.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 992766 993097 . - . gene_id "RvY_10174"; transcript_id "RvY_10174.1"; Scaffold005 rebuild exon 993159 993279 . - . gene_id "RvY_10174"; transcript_id "RvY_10174.1"; Scaffold005 rebuild exon 993386 993496 . - . gene_id "RvY_10174"; transcript_id "RvY_10174.1"; Scaffold005 rebuild transcript 993991 994795 . + . gene_id "RvY_10175"; transcript_id "RvY_10175.1"; gene_name "POP4"; annotation "ribonuclease P subunit P29 [EC:3.1.26.5]"; Pfam "[UPF0086] Domain of unknown function UPF0086"; CDD "A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins."; EC "EC3.1.26.5"; KO "K03538"; Scaffold005 rebuild exon 993991 994152 . + . gene_id "RvY_10175"; transcript_id "RvY_10175.1"; Scaffold005 rebuild exon 994286 994795 . + . gene_id "RvY_10175"; transcript_id "RvY_10175.1"; Scaffold005 rebuild transcript 995269 1002363 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; annotation "hypothetical protein."; Pfam "[C2]"; similar_genes "MCTP2_HUMAN(e-value:9.7e-20;bit-score:95.0)"; Scaffold005 rebuild exon 995269 995329 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 996189 996477 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 996546 996682 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 996744 997036 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 999683 1000073 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 1000144 1000328 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 1000528 1000950 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 1001131 1001499 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild exon 1001902 1002363 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.1"; Scaffold005 rebuild transcript 995269 1002363 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; annotation "hypothetical protein."; Pfam "[C2]"; similar_genes "MCTP2_HUMAN(e-value:9.7e-20;bit-score:95.0)"; Scaffold005 rebuild exon 995269 995329 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 996189 996477 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 996546 996682 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 996747 997036 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 999683 1000073 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 1000144 1000328 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 1000528 1000950 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 1001131 1001499 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild exon 1001902 1002363 . + . gene_id "RvY_10176"; transcript_id "RvY_10176.2"; Scaffold005 rebuild transcript 1003143 1003532 . + . gene_id "RvY_10177"; transcript_id "RvY_10177.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1003143 1003197 . + . gene_id "RvY_10177"; transcript_id "RvY_10177.1"; Scaffold005 rebuild exon 1003288 1003532 . + . gene_id "RvY_10177"; transcript_id "RvY_10177.1"; Scaffold005 rebuild transcript 1003594 1009972 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; annotation "hypothetical protein."; Pfam "[Myb_DNA-bind_3] Myb/SANT-like DNA-binding domain"; Scaffold005 rebuild exon 1003594 1003609 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1004934 1005549 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1005609 1006082 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1006335 1006751 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1006821 1008054 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1008352 1008711 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1008770 1009138 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1009404 1009745 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild exon 1009817 1009972 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.1"; Scaffold005 rebuild transcript 1004930 1009610 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; annotation "hypothetical protein."; Pfam "[Myb_DNA-bind_3] Myb/SANT-like DNA-binding domain"; Scaffold005 rebuild exon 1004930 1005549 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild exon 1005609 1006082 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild exon 1006335 1006751 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild exon 1006821 1008054 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild exon 1008352 1008711 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild exon 1008770 1009138 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild exon 1009404 1009610 . - . gene_id "RvY_10178"; transcript_id "RvY_10178.2"; Scaffold005 rebuild transcript 1012120 1012338 . + . gene_id "RvY_10179"; transcript_id "RvY_10179.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1012120 1012338 . + . gene_id "RvY_10179"; transcript_id "RvY_10179.1"; Scaffold005 rebuild transcript 1012524 1013585 . + . gene_id "RvY_10180"; transcript_id "RvY_10180.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1012524 1013169 . + . gene_id "RvY_10180"; transcript_id "RvY_10180.1"; Scaffold005 rebuild exon 1013239 1013585 . + . gene_id "RvY_10180"; transcript_id "RvY_10180.1"; Scaffold005 rebuild transcript 1013618 1014888 . + . gene_id "RvY_10181"; transcript_id "RvY_10181.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1013618 1013657 . + . gene_id "RvY_10181"; transcript_id "RvY_10181.1"; Scaffold005 rebuild exon 1013727 1014200 . + . gene_id "RvY_10181"; transcript_id "RvY_10181.1"; Scaffold005 rebuild exon 1014269 1014888 . + . gene_id "RvY_10181"; transcript_id "RvY_10181.1"; Scaffold005 rebuild transcript 1017522 1019128 . - . gene_id "RvY_10182"; transcript_id "RvY_10182.1"; gene_name "TDO2"; annotation "putative Tryptophan 2,3-dioxygenase"; Pfam "[Trp_dioxygenase] Tryptophan 2,3-dioxygenase"; CDD "Tryptophan 2,3-dioxygenase."; EC "EC1.13.11.11"; KO "K00453"; similar_genes "T23O_BOVIN(e-value:1.1e-37;bit-score:154.0)"; Scaffold005 rebuild exon 1017522 1017836 . - . gene_id "RvY_10182"; transcript_id "RvY_10182.1"; Scaffold005 rebuild exon 1018061 1018522 . - . gene_id "RvY_10182"; transcript_id "RvY_10182.1"; Scaffold005 rebuild exon 1018581 1018828 . - . gene_id "RvY_10182"; transcript_id "RvY_10182.1"; Scaffold005 rebuild exon 1018906 1019128 . - . gene_id "RvY_10182"; transcript_id "RvY_10182.1"; Scaffold005 rebuild transcript 1020344 1025799 . + . gene_id "RvY_10183"; transcript_id "RvY_10183.1"; gene_name "NKX1"; annotation "putative Homeobox protein slou"; Pfam "[Homeobox]"; KO "K09309"; similar_genes "SLOU_DROME(e-value:2.1e-30;bit-score:130.0)"; Scaffold005 rebuild exon 1020344 1020393 . + . gene_id "RvY_10183"; transcript_id "RvY_10183.1"; Scaffold005 rebuild exon 1023094 1023458 . + . gene_id "RvY_10183"; transcript_id "RvY_10183.1"; Scaffold005 rebuild exon 1024964 1025282 . + . gene_id "RvY_10183"; transcript_id "RvY_10183.1"; Scaffold005 rebuild exon 1025580 1025799 . + . gene_id "RvY_10183"; transcript_id "RvY_10183.1"; Scaffold005 rebuild transcript 1021909 1022708 . - . gene_id "RvY_10184"; transcript_id "RvY_10184.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1021909 1022030 . - . gene_id "RvY_10184"; transcript_id "RvY_10184.1"; Scaffold005 rebuild exon 1022504 1022708 . - . gene_id "RvY_10184"; transcript_id "RvY_10184.1"; Scaffold005 rebuild transcript 1027740 1029458 . - . gene_id "RvY_10185"; transcript_id "RvY_10185.1"; annotation "hypothetical protein."; Pfam "[Reticulon]"; Scaffold005 rebuild exon 1027740 1027804 . - . gene_id "RvY_10185"; transcript_id "RvY_10185.1"; Scaffold005 rebuild exon 1027882 1028153 . - . gene_id "RvY_10185"; transcript_id "RvY_10185.1"; Scaffold005 rebuild exon 1028289 1028751 . - . gene_id "RvY_10185"; transcript_id "RvY_10185.1"; Scaffold005 rebuild exon 1028972 1029458 . - . gene_id "RvY_10185"; transcript_id "RvY_10185.1"; Scaffold005 rebuild transcript 1031598 1032143 . - . gene_id "RvY_10186"; transcript_id "RvY_10186.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold005 rebuild exon 1031598 1031609 . - . gene_id "RvY_10186"; transcript_id "RvY_10186.1"; Scaffold005 rebuild exon 1031682 1031943 . - . gene_id "RvY_10186"; transcript_id "RvY_10186.1"; Scaffold005 rebuild exon 1032076 1032143 . - . gene_id "RvY_10186"; transcript_id "RvY_10186.1"; Scaffold005 rebuild transcript 1032610 1035158 . + . gene_id "RvY_10187"; transcript_id "RvY_10187.1"; gene_name "REX1_like"; annotation "hypothetical protein."; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold005 rebuild exon 1032610 1032712 . + . gene_id "RvY_10187"; transcript_id "RvY_10187.1"; Scaffold005 rebuild exon 1032783 1033304 . + . gene_id "RvY_10187"; transcript_id "RvY_10187.1"; Scaffold005 rebuild exon 1033563 1033861 . + . gene_id "RvY_10187"; transcript_id "RvY_10187.1"; Scaffold005 rebuild exon 1033932 1034891 . + . gene_id "RvY_10187"; transcript_id "RvY_10187.1"; Scaffold005 rebuild exon 1034958 1035158 . + . gene_id "RvY_10187"; transcript_id "RvY_10187.1"; Scaffold005 rebuild transcript 1035472 1036540 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1035472 1035842 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.1"; Scaffold005 rebuild exon 1035907 1036032 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.1"; Scaffold005 rebuild exon 1036301 1036351 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.1"; Scaffold005 rebuild exon 1036465 1036540 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.1"; Scaffold005 rebuild transcript 1035472 1036540 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1035472 1035617 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.2"; Scaffold005 rebuild exon 1035687 1035842 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.2"; Scaffold005 rebuild exon 1035907 1036032 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.2"; Scaffold005 rebuild exon 1036301 1036351 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.2"; Scaffold005 rebuild exon 1036465 1036540 . - . gene_id "RvY_10188"; transcript_id "RvY_10188.2"; Scaffold005 rebuild transcript 1037405 1038322 . + . gene_id "RvY_10189"; transcript_id "RvY_10189.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1037405 1038322 . + . gene_id "RvY_10189"; transcript_id "RvY_10189.1"; Scaffold005 rebuild transcript 1038536 1038943 . + . gene_id "RvY_10190"; transcript_id "RvY_10190.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1038536 1038943 . + . gene_id "RvY_10190"; transcript_id "RvY_10190.1"; Scaffold005 rebuild transcript 1039507 1040358 . - . gene_id "RvY_10191"; transcript_id "RvY_10191.1"; gene_name "COG0637"; annotation "hypothetical protein."; Pfam "[HAD_2] Haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "Predicted phosphatase/phosphohexomutase [General function prediction only]"; similar_genes "HDD1A_MOUSE(e-value:1.6e-15;bit-score:81.0)"; Scaffold005 rebuild exon 1039507 1039915 . - . gene_id "RvY_10191"; transcript_id "RvY_10191.1"; Scaffold005 rebuild exon 1039973 1040358 . - . gene_id "RvY_10191"; transcript_id "RvY_10191.1"; Scaffold005 rebuild transcript 1040811 1042294 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; gene_name "PRK06197"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; Scaffold005 rebuild exon 1040811 1040881 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild exon 1040951 1040987 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild exon 1041055 1041136 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild exon 1041221 1041382 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild exon 1041441 1041545 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild exon 1041721 1042080 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild exon 1042143 1042294 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.1"; Scaffold005 rebuild transcript 1040828 1042294 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; gene_name "PRK06197"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; Scaffold005 rebuild exon 1040828 1040881 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; Scaffold005 rebuild exon 1041055 1041136 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; Scaffold005 rebuild exon 1041221 1041382 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; Scaffold005 rebuild exon 1041441 1041545 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; Scaffold005 rebuild exon 1041721 1042080 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; Scaffold005 rebuild exon 1042143 1042294 . + . gene_id "RvY_10192"; transcript_id "RvY_10192.2"; Scaffold005 rebuild transcript 1044498 1047193 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; gene_name "Pcm"; annotation "putative Protein-L-isoaspartate O-methyltransferase domain-containing protein 1"; Pfam "[PCMT] Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)"; CDD "Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]"; similar_genes "PCMD1_BOVIN(e-value:4.5e-43;bit-score:172.0)"; Scaffold005 rebuild exon 1044498 1044543 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild exon 1044693 1044865 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild exon 1044957 1045325 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild exon 1045401 1045515 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild exon 1045725 1046156 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild exon 1046379 1046598 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild exon 1046770 1047193 . + . gene_id "RvY_10193"; transcript_id "RvY_10193.1"; Scaffold005 rebuild transcript 1048413 1049380 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; Scaffold005 rebuild exon 1048413 1048464 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.1"; Scaffold005 rebuild exon 1048560 1048730 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.1"; Scaffold005 rebuild exon 1048816 1048927 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.1"; Scaffold005 rebuild exon 1049053 1049380 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.1"; Scaffold005 rebuild transcript 1048532 1049380 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.2"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; Scaffold005 rebuild exon 1048532 1048730 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.2"; Scaffold005 rebuild exon 1048816 1048927 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.2"; Scaffold005 rebuild exon 1049053 1049380 . + . gene_id "RvY_10194"; transcript_id "RvY_10194.2"; Scaffold005 rebuild transcript 1049592 1050365 . - . gene_id "RvY_10195"; transcript_id "RvY_10195.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1049592 1049908 . - . gene_id "RvY_10195"; transcript_id "RvY_10195.1"; Scaffold005 rebuild exon 1050071 1050365 . - . gene_id "RvY_10195"; transcript_id "RvY_10195.1"; Scaffold005 rebuild transcript 1052121 1055212 . - . gene_id "RvY_10196"; transcript_id "RvY_10196.1"; gene_name "PRK07764"; annotation "hypothetical protein."; Pfam "[Pep_M12B_propep] Reprolysin family propeptide|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "DNA polymerase III subunits gamma and tau; Validated"; similar_genes "WASP_MOUSE(e-value:1.2e-09;bit-score:61.0)"; Scaffold005 rebuild exon 1052121 1052165 . - . gene_id "RvY_10196"; transcript_id "RvY_10196.1"; Scaffold005 rebuild exon 1052295 1052434 . - . gene_id "RvY_10196"; transcript_id "RvY_10196.1"; Scaffold005 rebuild exon 1052550 1054737 . - . gene_id "RvY_10196"; transcript_id "RvY_10196.1"; Scaffold005 rebuild exon 1054841 1055212 . - . gene_id "RvY_10196"; transcript_id "RvY_10196.1"; Scaffold005 rebuild transcript 1055362 1055550 . + . gene_id "RvY_10197"; transcript_id "RvY_10197.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1055362 1055550 . + . gene_id "RvY_10197"; transcript_id "RvY_10197.1"; Scaffold005 rebuild transcript 1055651 1056485 . - . gene_id "RvY_10198"; transcript_id "RvY_10198.1"; gene_name "(1)WWE"; annotation "hypothetical protein."; Pfam "[zf-RING_2] Ring finger domain|[WWE]"; CDD "(1)Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis."; KO "(1)K15700"; Scaffold005 rebuild exon 1055651 1056177 . - . gene_id "RvY_10198"; transcript_id "RvY_10198.1"; Scaffold005 rebuild exon 1056242 1056485 . - . gene_id "RvY_10198"; transcript_id "RvY_10198.1"; Scaffold005 rebuild transcript 1055949 1056615 . - . gene_id "RvY_10198"; transcript_id "RvY_10198.2"; gene_name "(1)WWE"; annotation "hypothetical protein."; Pfam "[zf-RING_2] Ring finger domain|[WWE]"; CDD "(1)Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis."; KO "(1)K15700"; Scaffold005 rebuild exon 1055949 1056177 . - . gene_id "RvY_10198"; transcript_id "RvY_10198.2"; Scaffold005 rebuild exon 1056242 1056615 . - . gene_id "RvY_10198"; transcript_id "RvY_10198.2"; Scaffold005 rebuild transcript 1061906 1065222 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; gene_name "IRS"; annotation "insulin receptor substrate"; Pfam "[PH]|[IRS] PTB domain (IRS-1 type)"; CDD "Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation."; KO "K07187"; Scaffold005 rebuild exon 1061906 1062076 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1062134 1062479 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1062535 1062707 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1062784 1062935 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1063019 1063243 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1063313 1063459 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1063533 1063747 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1063905 1064279 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1064573 1065155 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild exon 1065216 1065222 . + . gene_id "RvY_10199"; transcript_id "RvY_10199.1"; Scaffold005 rebuild transcript 1065774 1066373 . + . gene_id "RvY_10200"; transcript_id "RvY_10200.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1065774 1066373 . + . gene_id "RvY_10200"; transcript_id "RvY_10200.1"; Scaffold005 rebuild transcript 1067230 1068002 . + . gene_id "RvY_10201"; transcript_id "RvY_10201.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1067230 1067695 . + . gene_id "RvY_10201"; transcript_id "RvY_10201.1"; Scaffold005 rebuild exon 1067773 1068002 . + . gene_id "RvY_10201"; transcript_id "RvY_10201.1"; Scaffold005 rebuild transcript 1068436 1069671 . - . gene_id "RvY_10202"; transcript_id "RvY_10202.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1068436 1069671 . - . gene_id "RvY_10202"; transcript_id "RvY_10202.1"; Scaffold005 rebuild transcript 1070305 1073044 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; gene_name "eIF-36"; annotation "putative Eukaryotic translation initiation factor 3 subunit E"; Pfam "[eIF3_N] eIF3 subunit 6 N terminal domain|[PCI]"; KO "K03250"; similar_genes "EIF3E_CHICK(e-value:1.5e-39;bit-score:160.0)"; Scaffold005 rebuild exon 1070305 1070394 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1070458 1070575 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1070631 1070740 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1070833 1070988 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1071238 1071381 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1071492 1071622 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1071842 1071971 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1072179 1072384 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1072579 1072687 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild exon 1072886 1073044 . + . gene_id "RvY_10203"; transcript_id "RvY_10203.1"; Scaffold005 rebuild transcript 1073694 1075282 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1073694 1073797 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.1"; Scaffold005 rebuild exon 1073896 1074211 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.1"; Scaffold005 rebuild exon 1075250 1075282 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.1"; Scaffold005 rebuild transcript 1073888 1075282 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1073888 1074211 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.2"; Scaffold005 rebuild exon 1075250 1075282 . - . gene_id "RvY_10204"; transcript_id "RvY_10204.2"; Scaffold005 rebuild transcript 1075340 1076493 . + . gene_id "RvY_10205"; transcript_id "RvY_10205.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1075340 1075396 . + . gene_id "RvY_10205"; transcript_id "RvY_10205.1"; Scaffold005 rebuild exon 1076380 1076493 . + . gene_id "RvY_10205"; transcript_id "RvY_10205.1"; Scaffold005 rebuild transcript 1076410 1079668 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; gene_name "(1)K01175(2)PldB"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Esterase] Putative esterase|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold|[Hydrolase_4] Putative lysophospholipase"; CDD "Lysophospholipase [Lipid metabolism]"; KO "(1)K01175"; Scaffold005 rebuild exon 1076410 1076508 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; Scaffold005 rebuild exon 1077521 1077736 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; Scaffold005 rebuild exon 1078829 1079029 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; Scaffold005 rebuild exon 1079154 1079290 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; Scaffold005 rebuild exon 1079372 1079478 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; Scaffold005 rebuild exon 1079562 1079668 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.1"; Scaffold005 rebuild transcript 1077455 1079668 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.2"; gene_name "(1)K01175(2)PldB"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Esterase] Putative esterase|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold|[Hydrolase_4] Putative lysophospholipase"; CDD "Lysophospholipase [Lipid metabolism]"; KO "(1)K01175"; Scaffold005 rebuild exon 1077455 1077736 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.2"; Scaffold005 rebuild exon 1078829 1079029 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.2"; Scaffold005 rebuild exon 1079154 1079290 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.2"; Scaffold005 rebuild exon 1079372 1079478 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.2"; Scaffold005 rebuild exon 1079562 1079668 . - . gene_id "RvY_10206"; transcript_id "RvY_10206.2"; Scaffold005 rebuild transcript 1080998 1082038 . - . gene_id "RvY_10207"; transcript_id "RvY_10207.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1080998 1081212 . - . gene_id "RvY_10207"; transcript_id "RvY_10207.1"; Scaffold005 rebuild exon 1081291 1081469 . - . gene_id "RvY_10207"; transcript_id "RvY_10207.1"; Scaffold005 rebuild exon 1081624 1081747 . - . gene_id "RvY_10207"; transcript_id "RvY_10207.1"; Scaffold005 rebuild exon 1081821 1081901 . - . gene_id "RvY_10207"; transcript_id "RvY_10207.1"; Scaffold005 rebuild exon 1081978 1082038 . - . gene_id "RvY_10207"; transcript_id "RvY_10207.1"; Scaffold005 rebuild transcript 1082515 1083258 . - . gene_id "RvY_10208"; transcript_id "RvY_10208.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1082515 1082654 . - . gene_id "RvY_10208"; transcript_id "RvY_10208.1"; Scaffold005 rebuild exon 1082856 1083258 . - . gene_id "RvY_10208"; transcript_id "RvY_10208.1"; Scaffold005 rebuild transcript 1084397 1084931 . - . gene_id "RvY_10209"; transcript_id "RvY_10209.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1084397 1084533 . - . gene_id "RvY_10209"; transcript_id "RvY_10209.1"; Scaffold005 rebuild exon 1084607 1084931 . - . gene_id "RvY_10209"; transcript_id "RvY_10209.1"; Scaffold005 rebuild transcript 1085736 1087214 . - . gene_id "RvY_10210"; transcript_id "RvY_10210.1"; gene_name "FNTA"; annotation "protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [EC:2.5.1.58 2.5.1.59]"; Pfam "[PPTA] Protein prenyltransferase alpha subunit repeat"; CDD "Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]"; EC "EC2.5.1.58|EC2.5.1.59"; KO "K05955"; similar_genes "FNTA_BOVIN(e-value:1.7e-23;bit-score:107.0)"; Scaffold005 rebuild exon 1085736 1086048 . - . gene_id "RvY_10210"; transcript_id "RvY_10210.1"; Scaffold005 rebuild exon 1086122 1086184 . - . gene_id "RvY_10210"; transcript_id "RvY_10210.1"; Scaffold005 rebuild exon 1086385 1087214 . - . gene_id "RvY_10210"; transcript_id "RvY_10210.1"; Scaffold005 rebuild transcript 1087662 1088237 . - . gene_id "RvY_10211"; transcript_id "RvY_10211.1"; gene_name "SSR2"; annotation "translocon-associated protein subunit beta"; Pfam "[TRAP_beta] Translocon-associated protein beta (TRAPB)"; KO "K13250"; Scaffold005 rebuild exon 1087662 1088237 . - . gene_id "RvY_10211"; transcript_id "RvY_10211.1"; Scaffold005 rebuild transcript 1088891 1090850 . + . gene_id "RvY_10212"; transcript_id "RvY_10212.1"; gene_name "SUA7"; annotation "hypothetical protein."; Pfam "[Cyclin_N] Cyclin, N-terminal domain|[TFIIB] Transcription factor TFIIB repeat|[TF_Zn_Ribbon] TFIIB zinc-binding"; CDD "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]"; KO "K15196"; Scaffold005 rebuild exon 1088891 1088971 . + . gene_id "RvY_10212"; transcript_id "RvY_10212.1"; Scaffold005 rebuild exon 1089038 1089152 . + . gene_id "RvY_10212"; transcript_id "RvY_10212.1"; Scaffold005 rebuild exon 1089340 1090076 . + . gene_id "RvY_10212"; transcript_id "RvY_10212.1"; Scaffold005 rebuild exon 1090179 1090275 . + . gene_id "RvY_10212"; transcript_id "RvY_10212.1"; Scaffold005 rebuild exon 1090375 1090850 . + . gene_id "RvY_10212"; transcript_id "RvY_10212.1"; Scaffold005 rebuild transcript 1091127 1092744 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; product "Rad51b"; gene_name "RAD51L2"; annotation "Rad51b | RAD51-like protein 2"; Pfam "[AAA_25] AAA domain|[KaiC]|[Rad51]"; CDD "Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 ."; KO "K10870"; similar_genes "RA51C_ARATH(e-value:1.2e-13;bit-score:74.0)"; Scaffold005 rebuild exon 1091127 1091348 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; Scaffold005 rebuild exon 1091411 1091605 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; Scaffold005 rebuild exon 1091688 1091953 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; Scaffold005 rebuild exon 1092056 1092210 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; Scaffold005 rebuild exon 1092288 1092528 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; Scaffold005 rebuild exon 1092618 1092744 . - . gene_id "RvY_10213"; transcript_id "RvY_10213.1"; Scaffold005 rebuild transcript 1093189 1093829 . + . gene_id "RvY_10214"; transcript_id "RvY_10214.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1093189 1093224 . + . gene_id "RvY_10214"; transcript_id "RvY_10214.1"; Scaffold005 rebuild exon 1093235 1093328 . + . gene_id "RvY_10214"; transcript_id "RvY_10214.1"; Scaffold005 rebuild exon 1093570 1093829 . + . gene_id "RvY_10214"; transcript_id "RvY_10214.1"; Scaffold005 rebuild transcript 1095632 1096323 . - . gene_id "RvY_10215"; transcript_id "RvY_10215.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1095632 1095843 . - . gene_id "RvY_10215"; transcript_id "RvY_10215.1"; Scaffold005 rebuild exon 1095919 1096033 . - . gene_id "RvY_10215"; transcript_id "RvY_10215.1"; Scaffold005 rebuild exon 1096106 1096170 . - . gene_id "RvY_10215"; transcript_id "RvY_10215.1"; Scaffold005 rebuild exon 1096236 1096323 . - . gene_id "RvY_10215"; transcript_id "RvY_10215.1"; Scaffold005 rebuild transcript 1097322 1097990 . + . gene_id "RvY_10216"; transcript_id "RvY_10216.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1097322 1097990 . + . gene_id "RvY_10216"; transcript_id "RvY_10216.1"; Scaffold005 rebuild transcript 1098300 1099895 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; gene_name "PlsC"; annotation "hypothetical protein."; Pfam "[Acyltransferase]"; CDD "Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family."; EC "EC2.3.1.51"; similar_genes "PLCE_MOUSE(e-value:8.5e-21;bit-score:98.0)"; Scaffold005 rebuild exon 1098300 1098513 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1098609 1098732 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1098822 1098998 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1099084 1099174 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1099255 1099344 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1099436 1099551 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1099632 1099710 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild exon 1099773 1099895 . - . gene_id "RvY_10217"; transcript_id "RvY_10217.1"; Scaffold005 rebuild transcript 1099834 1100079 . + . gene_id "RvY_10218"; transcript_id "RvY_10218.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1099834 1100079 . + . gene_id "RvY_10218"; transcript_id "RvY_10218.1"; Scaffold005 rebuild transcript 1101075 1101323 . + . gene_id "RvY_10219"; transcript_id "RvY_10219.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1101075 1101323 . + . gene_id "RvY_10219"; transcript_id "RvY_10219.1"; Scaffold005 rebuild transcript 1102279 1105675 . + . gene_id "RvY_10220"; transcript_id "RvY_10220.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1102279 1102405 . + . gene_id "RvY_10220"; transcript_id "RvY_10220.1"; Scaffold005 rebuild exon 1105287 1105675 . + . gene_id "RvY_10220"; transcript_id "RvY_10220.1"; Scaffold005 rebuild transcript 1106774 1108475 . - . gene_id "RvY_10221"; transcript_id "RvY_10221.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1106774 1106997 . - . gene_id "RvY_10221"; transcript_id "RvY_10221.1"; Scaffold005 rebuild exon 1108051 1108339 . - . gene_id "RvY_10221"; transcript_id "RvY_10221.1"; Scaffold005 rebuild exon 1108413 1108475 . - . gene_id "RvY_10221"; transcript_id "RvY_10221.1"; Scaffold005 rebuild transcript 1108840 1111543 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; gene_name "ER_PDI_fam"; annotation "hypothetical protein."; Pfam "[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin]"; CDD "protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs)."; Scaffold005 rebuild exon 1108840 1109258 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1109385 1109633 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1109690 1109846 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1109909 1110075 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1110156 1110317 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1110416 1110606 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1110790 1111146 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1111215 1111401 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild exon 1111477 1111543 . - . gene_id "RvY_10222"; transcript_id "RvY_10222.1"; Scaffold005 rebuild transcript 1112430 1115220 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; gene_name "ER_PDI_fam"; annotation "hypothetical protein."; Pfam "[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin]"; CDD "protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs)."; Scaffold005 rebuild exon 1112430 1112869 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1113142 1113544 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1113607 1113764 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1113825 1113986 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1114062 1114282 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1114362 1114724 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1114937 1115093 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild exon 1115175 1115220 . - . gene_id "RvY_10223"; transcript_id "RvY_10223.1"; Scaffold005 rebuild transcript 1115581 1118388 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; gene_name "ER_PDI_fam"; annotation "hypothetical protein."; Pfam "[Thioredoxin_6] Thioredoxin-like domain|[Thioredoxin]"; CDD "protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs)."; Scaffold005 rebuild exon 1115581 1115996 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1116310 1116546 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1116613 1116772 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1116840 1117018 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1117093 1117254 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1117399 1117616 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1117676 1118032 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1118105 1118225 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild exon 1118325 1118388 . - . gene_id "RvY_10224"; transcript_id "RvY_10224.1"; Scaffold005 rebuild transcript 1119041 1120967 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; gene_name "VRG4"; annotation "putative UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter"; Pfam "[TPT] Triose-phosphate Transporter family"; CDD "Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]"; KO "K15281"; similar_genes "S35D2_BOVIN(e-value:4.1e-31;bit-score:132.0)"; Scaffold005 rebuild exon 1119041 1119125 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1119345 1119427 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1119484 1119630 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1119699 1119791 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1119860 1119962 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1120046 1120114 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1120185 1120256 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1120396 1120463 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1120523 1120609 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1120691 1120724 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild exon 1120807 1120967 . - . gene_id "RvY_10225"; transcript_id "RvY_10225.1"; Scaffold005 rebuild transcript 1121499 1122526 . + . gene_id "RvY_10226"; transcript_id "RvY_10226.1"; annotation "hypothetical protein."; Pfam "[HCaRG] HCaRG protein"; Scaffold005 rebuild exon 1121499 1121646 . + . gene_id "RvY_10226"; transcript_id "RvY_10226.1"; Scaffold005 rebuild exon 1121858 1121969 . + . gene_id "RvY_10226"; transcript_id "RvY_10226.1"; Scaffold005 rebuild exon 1122046 1122205 . + . gene_id "RvY_10226"; transcript_id "RvY_10226.1"; Scaffold005 rebuild exon 1122281 1122394 . + . gene_id "RvY_10226"; transcript_id "RvY_10226.1"; Scaffold005 rebuild exon 1122470 1122526 . + . gene_id "RvY_10226"; transcript_id "RvY_10226.1"; Scaffold005 rebuild transcript 1123116 1127402 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; gene_name "PCGF4"; annotation "polycomb group RING finger protein 4"; KO "K11459"; similar_genes "BMI1B_DANRE(e-value:1.5e-07;bit-score:54.0)"; Scaffold005 rebuild exon 1123116 1123132 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1123194 1123570 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1123781 1124192 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1124506 1125583 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1125662 1125742 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1125929 1126033 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1126098 1126143 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1126209 1126338 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1126430 1126477 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1126574 1126629 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1127082 1127190 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild exon 1127291 1127402 . - . gene_id "RvY_10227"; transcript_id "RvY_10227.1"; Scaffold005 rebuild transcript 1128713 1133466 . + . gene_id "RvY_10228"; transcript_id "RvY_10228.1"; gene_name "MDN1"; annotation "hypothetical protein."; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; Scaffold005 rebuild exon 1128713 1129049 . + . gene_id "RvY_10228"; transcript_id "RvY_10228.1"; Scaffold005 rebuild exon 1129459 1130063 . + . gene_id "RvY_10228"; transcript_id "RvY_10228.1"; Scaffold005 rebuild exon 1131693 1131911 . + . gene_id "RvY_10228"; transcript_id "RvY_10228.1"; Scaffold005 rebuild exon 1132027 1132777 . + . gene_id "RvY_10228"; transcript_id "RvY_10228.1"; Scaffold005 rebuild exon 1132856 1133466 . + . gene_id "RvY_10228"; transcript_id "RvY_10228.1"; Scaffold005 rebuild transcript 1134125 1136292 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; gene_name "NAGA"; annotation "putative Alpha-N-acetylgalactosaminidase"; Pfam "[Melibiase]"; CDD "Melibiase."; EC "EC3.2.1.49"; KO "K01204"; similar_genes "NAGAB_CHICK(e-value:5.3e-46;bit-score:182.0)"; Scaffold005 rebuild exon 1134125 1134212 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1134292 1134376 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1134476 1134558 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1134643 1134734 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1134806 1134980 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1135076 1135170 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1135270 1135408 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1135486 1135534 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1135632 1135809 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1135870 1135951 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild exon 1136051 1136292 . + . gene_id "RvY_10229"; transcript_id "RvY_10229.1"; Scaffold005 rebuild transcript 1136883 1138272 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold005 rebuild exon 1136883 1137161 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; Scaffold005 rebuild exon 1137250 1137334 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; Scaffold005 rebuild exon 1137458 1137539 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; Scaffold005 rebuild exon 1137629 1137776 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; Scaffold005 rebuild exon 1137846 1138002 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; Scaffold005 rebuild exon 1138091 1138272 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.1"; Scaffold005 rebuild transcript 1136883 1137561 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.2"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold005 rebuild exon 1136883 1137161 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.2"; Scaffold005 rebuild exon 1137250 1137334 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.2"; Scaffold005 rebuild exon 1137458 1137561 . + . gene_id "RvY_10230"; transcript_id "RvY_10230.2"; Scaffold005 rebuild transcript 1139831 1142981 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; gene_name "RING"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)"; Scaffold005 rebuild exon 1139831 1140604 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1141713 1141814 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1141933 1142034 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1142108 1142229 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1142327 1142368 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1142466 1142521 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1142647 1142755 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild exon 1142861 1142981 . - . gene_id "RvY_10231"; transcript_id "RvY_10231.1"; Scaffold005 rebuild transcript 1151271 1151450 . - . gene_id "RvY_10232"; transcript_id "RvY_10232.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1151271 1151450 . - . gene_id "RvY_10232"; transcript_id "RvY_10232.1"; Scaffold005 rebuild transcript 1151626 1152051 . + . gene_id "RvY_10233"; transcript_id "RvY_10233.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1151626 1152051 . + . gene_id "RvY_10233"; transcript_id "RvY_10233.1"; Scaffold005 rebuild transcript 1153360 1154380 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.1"; gene_name "(1)mtnA(2)salvage_mtnA"; annotation "(1)Methylthioribose-1-phosphate isomerase(2)hypothetical protein."; Pfam "[IF-2B] Initiation factor 2 subunit family"; CDD "S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA."; EC "EC5.3.1.23"; KO "(1)K08963"; similar_genes "(1)MTNA_MOUSE(e-value:2.4e-69;bit-score:259.0)(2)MTNA_XENTR(e-value:9.2e-14;bit-score:75.0)"; Scaffold005 rebuild exon 1153360 1153624 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.1"; Scaffold005 rebuild exon 1153695 1153769 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.1"; Scaffold005 rebuild exon 1153860 1154018 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.1"; Scaffold005 rebuild exon 1154088 1154380 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.1"; Scaffold005 rebuild transcript 1152951 1153696 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.2"; gene_name "(1)mtnA(2)salvage_mtnA"; annotation "(1)Methylthioribose-1-phosphate isomerase(2)hypothetical protein."; Pfam "[IF-2B] Initiation factor 2 subunit family"; CDD "S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA."; EC "EC5.3.1.23"; KO "(1)K08963"; similar_genes "(1)MTNA_MOUSE(e-value:2.4e-69;bit-score:259.0)(2)MTNA_XENTR(e-value:9.2e-14;bit-score:75.0)"; Scaffold005 rebuild exon 1152951 1153082 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.2"; Scaffold005 rebuild exon 1153155 1153385 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.2"; Scaffold005 rebuild exon 1153455 1153626 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.2"; Scaffold005 rebuild exon 1153695 1153696 . + . gene_id "RvY_10234"; transcript_id "RvY_10234.2"; Scaffold005 rebuild transcript 1154700 1155724 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; gene_name "(1)ARL3(2)Arl3"; annotation "(1)ADP-ribosylation factor-like protein 3(2)putative ADP-ribosylation factor-like protein 3"; Pfam "[G-alpha] G-protein alpha subunit|(1)[SRPRB] Signal recognition particle receptor beta subunit|(1)[Miro] Miro-like protein|(1)[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|(1)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation."; KO "(1)K07944"; similar_genes "(1)ARL3_TAEGU(e-value:3.0e-80;bit-score:296.0)(2)ARL3_DANRE(e-value:3.7e-34;bit-score:143.0)"; Scaffold005 rebuild exon 1154700 1154927 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; Scaffold005 rebuild exon 1155005 1155055 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; Scaffold005 rebuild exon 1155191 1155246 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; Scaffold005 rebuild exon 1155356 1155416 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; Scaffold005 rebuild exon 1155501 1155644 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; Scaffold005 rebuild exon 1155722 1155724 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.1"; Scaffold005 rebuild transcript 1155125 1155620 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.2"; gene_name "(1)ARL3(2)Arl3"; annotation "(1)ADP-ribosylation factor-like protein 3(2)putative ADP-ribosylation factor-like protein 3"; Pfam "[G-alpha] G-protein alpha subunit|(1)[SRPRB] Signal recognition particle receptor beta subunit|(1)[Miro] Miro-like protein|(1)[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|(1)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation."; KO "(1)K07944"; similar_genes "(1)ARL3_TAEGU(e-value:3.0e-80;bit-score:296.0)(2)ARL3_DANRE(e-value:3.7e-34;bit-score:143.0)"; Scaffold005 rebuild exon 1155125 1155246 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.2"; Scaffold005 rebuild exon 1155356 1155416 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.2"; Scaffold005 rebuild exon 1155501 1155620 . - . gene_id "RvY_10235"; transcript_id "RvY_10235.2"; Scaffold005 rebuild transcript 1156277 1158831 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; annotation "hypothetical protein."; Pfam "[zf-SAP30] SAP30 zinc-finger"; Scaffold005 rebuild exon 1156277 1156777 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; Scaffold005 rebuild exon 1157056 1157157 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; Scaffold005 rebuild exon 1157230 1157730 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; Scaffold005 rebuild exon 1157976 1158284 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; Scaffold005 rebuild exon 1158435 1158712 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; Scaffold005 rebuild exon 1158783 1158831 . - . gene_id "RvY_10236"; transcript_id "RvY_10236.1"; Scaffold005 rebuild transcript 1161991 1163398 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; annotation "hypothetical protein."; Pfam "[MRP-L47] Mitochondrial 39-S ribosomal protein L47 (MRP-L47)"; Scaffold005 rebuild exon 1161991 1162139 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; Scaffold005 rebuild exon 1162422 1162504 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; Scaffold005 rebuild exon 1162577 1162637 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; Scaffold005 rebuild exon 1162747 1162843 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; Scaffold005 rebuild exon 1162910 1163085 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; Scaffold005 rebuild exon 1163173 1163398 . + . gene_id "RvY_10237"; transcript_id "RvY_10237.1"; Scaffold005 rebuild transcript 1163703 1165322 . - . gene_id "RvY_10238"; transcript_id "RvY_10238.1"; gene_name "FEN1"; annotation "Flap endonuclease 1-A"; Pfam "[XPG_I] XPG I-region|[XPG_N] XPG N-terminal domain|[5_3_exonuc] 5'-3' exonuclease, C-terminal SAM fold"; CDD "flap endonuclease-1; Provisional"; EC "EC3.-.-.-|EC3.1.-.-"; KO "K04799"; similar_genes "FEN1A_XENLA(e-value:5.8e-94;bit-score:341.0)"; Scaffold005 rebuild exon 1163703 1163882 . - . gene_id "RvY_10238"; transcript_id "RvY_10238.1"; Scaffold005 rebuild exon 1163984 1164058 . - . gene_id "RvY_10238"; transcript_id "RvY_10238.1"; Scaffold005 rebuild exon 1164211 1164887 . - . gene_id "RvY_10238"; transcript_id "RvY_10238.1"; Scaffold005 rebuild exon 1165004 1165139 . - . gene_id "RvY_10238"; transcript_id "RvY_10238.1"; Scaffold005 rebuild exon 1165200 1165322 . - . gene_id "RvY_10238"; transcript_id "RvY_10238.1"; Scaffold005 rebuild transcript 1166819 1169545 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; annotation "hypothetical protein."; Pfam "[AAA_22] AAA domain|[AAA] ATPase family associated with various cellular activities (AAA)|[Rad17] Rad17 cell cycle checkpoint protein"; Scaffold005 rebuild exon 1166819 1166948 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild exon 1167022 1167339 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild exon 1167412 1167612 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild exon 1167678 1168045 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild exon 1168119 1168286 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild exon 1168361 1169043 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild exon 1169248 1169545 . + . gene_id "RvY_10239"; transcript_id "RvY_10239.1"; Scaffold005 rebuild transcript 1169760 1169930 . - . gene_id "RvY_10240"; transcript_id "RvY_10240.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1169760 1169930 . - . gene_id "RvY_10240"; transcript_id "RvY_10240.1"; Scaffold005 rebuild transcript 1172038 1172770 . + . gene_id "RvY_10241"; transcript_id "RvY_10241.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1172038 1172103 . + . gene_id "RvY_10241"; transcript_id "RvY_10241.1"; Scaffold005 rebuild exon 1172696 1172770 . + . gene_id "RvY_10241"; transcript_id "RvY_10241.1"; Scaffold005 rebuild transcript 1173067 1173356 . - . gene_id "RvY_10242"; transcript_id "RvY_10242.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1173067 1173180 . - . gene_id "RvY_10242"; transcript_id "RvY_10242.1"; Scaffold005 rebuild exon 1173237 1173356 . - . gene_id "RvY_10242"; transcript_id "RvY_10242.1"; Scaffold005 rebuild transcript 1174357 1187625 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; gene_name "K01104"; annotation "Tyrosine-protein phosphatase non-receptor type 4"; Pfam "(1)[FERM_N] FERM N-terminal domain|(1)[FERM_M] FERM central domain|[Y_phosphatase] Protein-tyrosine phosphatase|[PDZ] PDZ domain (Also known as DHR or GLGF)|(1)[FERM_C] FERM C-terminal PH-like domain"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K01104"; similar_genes "PTN4_MOUSE(e-value:6.3e-51;bit-score:198.0)"; Scaffold005 rebuild exon 1174357 1174512 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1174585 1174710 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1174800 1174921 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1175023 1175120 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1175210 1175330 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1175415 1175502 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1175589 1175677 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1175827 1175890 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1175957 1176117 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1177828 1177899 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1180061 1180411 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1184567 1184924 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1185185 1185398 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1185538 1185689 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1185808 1185898 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1186016 1186086 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1186237 1186383 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1186684 1186812 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1186900 1187184 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1187269 1187314 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild exon 1187588 1187625 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.1"; Scaffold005 rebuild transcript 1177185 1187625 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; gene_name "K01104"; annotation "Tyrosine-protein phosphatase non-receptor type 4"; Pfam "(1)[FERM_N] FERM N-terminal domain|(1)[FERM_M] FERM central domain|[Y_phosphatase] Protein-tyrosine phosphatase|[PDZ] PDZ domain (Also known as DHR or GLGF)|(1)[FERM_C] FERM C-terminal PH-like domain"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K01104"; similar_genes "PTN4_MOUSE(e-value:6.3e-51;bit-score:198.0)"; Scaffold005 rebuild exon 1177185 1177276 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1177828 1177899 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1180061 1180411 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1184567 1184924 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1185185 1185398 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1185538 1185689 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1185808 1185898 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1186016 1186086 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1186237 1186383 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1186684 1186812 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1186900 1187184 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1187269 1187314 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild exon 1187588 1187625 . + . gene_id "RvY_10243"; transcript_id "RvY_10243.2"; Scaffold005 rebuild transcript 1188231 1189674 . - . gene_id "RvY_10244"; transcript_id "RvY_10244.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1188231 1188853 . - . gene_id "RvY_10244"; transcript_id "RvY_10244.1"; Scaffold005 rebuild exon 1189122 1189674 . - . gene_id "RvY_10244"; transcript_id "RvY_10244.1"; Scaffold005 rebuild transcript 1190492 1191389 . - . gene_id "RvY_10245"; transcript_id "RvY_10245.1"; gene_name "RP-S11e"; annotation "40S ribosomal protein S11"; Pfam "[Ribosomal_S17] Ribosomal protein S17"; CDD "40S ribosomal protein S11; Provisional"; KO "K02949"; similar_genes "RS11_DROPS(e-value:5.1e-59;bit-score:225.0)"; Scaffold005 rebuild exon 1190492 1190615 . - . gene_id "RvY_10245"; transcript_id "RvY_10245.1"; Scaffold005 rebuild exon 1190678 1190883 . - . gene_id "RvY_10245"; transcript_id "RvY_10245.1"; Scaffold005 rebuild exon 1191042 1191164 . - . gene_id "RvY_10245"; transcript_id "RvY_10245.1"; Scaffold005 rebuild exon 1191357 1191389 . - . gene_id "RvY_10245"; transcript_id "RvY_10245.1"; Scaffold005 rebuild transcript 1191891 1193226 . + . gene_id "RvY_10246"; transcript_id "RvY_10246.1"; gene_name "PCNA"; annotation "putative Proliferating cell nuclear antigen"; Pfam "[Rad1] Repair protein Rad1/Rec1/Rad17|[PCNA_N] Proliferating cell nuclear antigen, N-terminal domain|[PCNA_C] Proliferating cell nuclear antigen, C-terminal domain|[Rad9]"; CDD "proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K04802"; similar_genes "PCNA_BOMMO(e-value:1.6e-49;bit-score:194.0)"; Scaffold005 rebuild exon 1191891 1192129 . + . gene_id "RvY_10246"; transcript_id "RvY_10246.1"; Scaffold005 rebuild exon 1192199 1192364 . + . gene_id "RvY_10246"; transcript_id "RvY_10246.1"; Scaffold005 rebuild exon 1192456 1192600 . + . gene_id "RvY_10246"; transcript_id "RvY_10246.1"; Scaffold005 rebuild exon 1192893 1193066 . + . gene_id "RvY_10246"; transcript_id "RvY_10246.1"; Scaffold005 rebuild exon 1193144 1193226 . + . gene_id "RvY_10246"; transcript_id "RvY_10246.1"; Scaffold005 rebuild transcript 1193602 1194973 . - . gene_id "RvY_10247"; transcript_id "RvY_10247.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1193602 1194280 . - . gene_id "RvY_10247"; transcript_id "RvY_10247.1"; Scaffold005 rebuild exon 1194502 1194665 . - . gene_id "RvY_10247"; transcript_id "RvY_10247.1"; Scaffold005 rebuild exon 1194752 1194973 . - . gene_id "RvY_10247"; transcript_id "RvY_10247.1"; Scaffold005 rebuild transcript 1195198 1196617 . + . gene_id "RvY_10248"; transcript_id "RvY_10248.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1195198 1195365 . + . gene_id "RvY_10248"; transcript_id "RvY_10248.1"; Scaffold005 rebuild exon 1196165 1196617 . + . gene_id "RvY_10248"; transcript_id "RvY_10248.1"; Scaffold005 rebuild transcript 1197069 1200960 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; gene_name "ABC.ATM"; annotation "ATP-binding cassette sub-family B member 6, mitochondrial"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]"; KO "K05663"; similar_genes "ABCB6_XENTR(e-value:1.0e-116;bit-score:417.0)"; Scaffold005 rebuild exon 1197069 1197392 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild exon 1197585 1197878 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild exon 1198137 1198831 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild exon 1199185 1199499 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild exon 1199703 1199789 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild exon 1199860 1200203 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild exon 1200461 1200960 . - . gene_id "RvY_10249"; transcript_id "RvY_10249.1"; Scaffold005 rebuild transcript 1202837 1206284 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; product "Treh"; gene_name "treA"; annotation "Treh | putative Trehalase"; Pfam "[Trehalase]"; EC "EC3.2.1.28"; KO "K01194"; similar_genes "TREA_DROME(e-value:1.2e-26;bit-score:118.0)"; Scaffold005 rebuild exon 1202837 1203019 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1203421 1203527 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1204114 1204234 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1204406 1204641 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1204768 1204956 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1205038 1205351 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1205518 1205711 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1205791 1206133 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild exon 1206190 1206284 . - . gene_id "RvY_10250"; transcript_id "RvY_10250.1"; Scaffold005 rebuild transcript 1207457 1209060 . + . gene_id "RvY_10251"; transcript_id "RvY_10251.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1207457 1207539 . + . gene_id "RvY_10251"; transcript_id "RvY_10251.1"; Scaffold005 rebuild exon 1207655 1208167 . + . gene_id "RvY_10251"; transcript_id "RvY_10251.1"; Scaffold005 rebuild exon 1208393 1208785 . + . gene_id "RvY_10251"; transcript_id "RvY_10251.1"; Scaffold005 rebuild exon 1208871 1209060 . + . gene_id "RvY_10251"; transcript_id "RvY_10251.1"; Scaffold005 rebuild transcript 1209267 1209950 . - . gene_id "RvY_10252"; transcript_id "RvY_10252.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1209267 1209950 . - . gene_id "RvY_10252"; transcript_id "RvY_10252.1"; Scaffold005 rebuild transcript 1209972 1210277 . - . gene_id "RvY_10253"; transcript_id "RvY_10253.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1209972 1210277 . - . gene_id "RvY_10253"; transcript_id "RvY_10253.1"; Scaffold005 rebuild transcript 1210563 1212920 . - . gene_id "RvY_10254"; transcript_id "RvY_10254.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1210563 1211606 . - . gene_id "RvY_10254"; transcript_id "RvY_10254.1"; Scaffold005 rebuild exon 1211949 1212411 . - . gene_id "RvY_10254"; transcript_id "RvY_10254.1"; Scaffold005 rebuild exon 1212573 1212775 . - . gene_id "RvY_10254"; transcript_id "RvY_10254.1"; Scaffold005 rebuild exon 1212870 1212920 . - . gene_id "RvY_10254"; transcript_id "RvY_10254.1"; Scaffold005 rebuild transcript 1213369 1214082 . + . gene_id "RvY_10255"; transcript_id "RvY_10255.1"; annotation "hypothetical protein."; Pfam "[RLL] Putative carnitine deficiency-associated protein"; KO "K15433"; similar_genes "CN166_XENLA(e-value:3.1e-12;bit-score:70.0)"; Scaffold005 rebuild exon 1213369 1214082 . + . gene_id "RvY_10255"; transcript_id "RvY_10255.1"; Scaffold005 rebuild transcript 1214457 1214967 . - . gene_id "RvY_10256"; transcript_id "RvY_10256.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1214457 1214789 . - . gene_id "RvY_10256"; transcript_id "RvY_10256.1"; Scaffold005 rebuild exon 1214869 1214967 . - . gene_id "RvY_10256"; transcript_id "RvY_10256.1"; Scaffold005 rebuild transcript 1216966 1218826 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; gene_name "eIF-3Y"; annotation "translation initiation factor eIF-3 subunit P62"; Pfam "[Gcd10p] Gcd10p family"; KO "K03256"; similar_genes "TRM6_MOUSE(e-value:6.7e-08;bit-score:55.0)"; Scaffold005 rebuild exon 1216966 1217290 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild exon 1217368 1217580 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild exon 1217668 1217838 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild exon 1217907 1217990 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild exon 1218071 1218278 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild exon 1218527 1218669 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild exon 1218726 1218826 . - . gene_id "RvY_10257"; transcript_id "RvY_10257.1"; Scaffold005 rebuild transcript 1219414 1219575 . + . gene_id "RvY_10258"; transcript_id "RvY_10258.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1219414 1219575 . + . gene_id "RvY_10258"; transcript_id "RvY_10258.1"; Scaffold005 rebuild transcript 1222127 1222351 . + . gene_id "RvY_10259"; transcript_id "RvY_10259.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1222127 1222351 . + . gene_id "RvY_10259"; transcript_id "RvY_10259.1"; Scaffold005 rebuild transcript 1223401 1237306 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; gene_name "SPTB"; annotation "spectrin beta"; Pfam "[PH]|[Spectrin] Spectrin repeat|[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; KO "K06115"; similar_genes "SPTCB_DROME(e-value:1.7e-23;bit-score:107.0)"; Scaffold005 rebuild exon 1223401 1223553 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1223665 1223832 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1224504 1224620 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1224689 1224956 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1225044 1225153 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1225224 1225637 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1225711 1225842 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1225921 1226142 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1226210 1226418 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1226502 1226679 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1226905 1227414 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1227721 1228110 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1228432 1229001 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1229258 1229554 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1229625 1230170 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1230269 1230739 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1231039 1231665 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1231917 1232358 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1232557 1232865 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1232975 1233444 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1233751 1234104 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1234384 1234841 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1235041 1235245 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1235314 1235496 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1235674 1236099 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1236234 1236666 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1236743 1236832 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild exon 1237047 1237306 . + . gene_id "RvY_10260"; transcript_id "RvY_10260.1"; Scaffold005 rebuild transcript 1237822 1238736 . - . gene_id "RvY_10261"; transcript_id "RvY_10261.1"; gene_name "U2AF1"; annotation "Splicing factor U2AF 35 kDa subunit"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; CDD "RNA recognition motif."; KO "K12836"; similar_genes "U2AF1_BOVIN(e-value:1.1e-58;bit-score:224.0)"; Scaffold005 rebuild exon 1237822 1238026 . - . gene_id "RvY_10261"; transcript_id "RvY_10261.1"; Scaffold005 rebuild exon 1238097 1238296 . - . gene_id "RvY_10261"; transcript_id "RvY_10261.1"; Scaffold005 rebuild exon 1238386 1238736 . - . gene_id "RvY_10261"; transcript_id "RvY_10261.1"; Scaffold005 rebuild transcript 1239705 1240049 . + . gene_id "RvY_10262"; transcript_id "RvY_10262.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1239705 1240049 . + . gene_id "RvY_10262"; transcript_id "RvY_10262.1"; Scaffold005 rebuild transcript 1242497 1242712 . + . gene_id "RvY_10263"; transcript_id "RvY_10263.1"; gene_name "PTKc_PDGFR"; annotation "hypothetical protein."; Pfam "[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells"; Scaffold005 rebuild exon 1242497 1242712 . + . gene_id "RvY_10263"; transcript_id "RvY_10263.1"; Scaffold005 rebuild transcript 1242896 1243191 . - . gene_id "RvY_10264"; transcript_id "RvY_10264.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1242896 1243104 . - . gene_id "RvY_10264"; transcript_id "RvY_10264.1"; Scaffold005 rebuild exon 1243143 1243191 . - . gene_id "RvY_10264"; transcript_id "RvY_10264.1"; Scaffold005 rebuild transcript 1244697 1245808 . + . gene_id "RvY_10265"; transcript_id "RvY_10265.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1244697 1244733 . + . gene_id "RvY_10265"; transcript_id "RvY_10265.1"; Scaffold005 rebuild exon 1244794 1245180 . + . gene_id "RvY_10265"; transcript_id "RvY_10265.1"; Scaffold005 rebuild exon 1245390 1245808 . + . gene_id "RvY_10265"; transcript_id "RvY_10265.1"; Scaffold005 rebuild transcript 1245640 1246332 . - . gene_id "RvY_10266"; transcript_id "RvY_10266.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1245640 1245886 . - . gene_id "RvY_10266"; transcript_id "RvY_10266.1"; Scaffold005 rebuild exon 1246277 1246332 . - . gene_id "RvY_10266"; transcript_id "RvY_10266.1"; Scaffold005 rebuild transcript 1247314 1251637 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; gene_name "Piwi_ago-like"; annotation "hypothetical protein."; Pfam "[Piwi]|[PAZ]"; CDD "Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; similar_genes "AGO11_ORYSJ(e-value:6.6e-23;bit-score:105.0)"; Scaffold005 rebuild exon 1247314 1247428 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1247502 1247692 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1247770 1247843 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1247919 1248078 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1248156 1248385 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1248636 1248672 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1248758 1249377 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1249636 1249765 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1249847 1250254 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1250316 1250558 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1250623 1251125 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild exon 1251271 1251637 . - . gene_id "RvY_10267"; transcript_id "RvY_10267.1"; Scaffold005 rebuild transcript 1251798 1253358 . - . gene_id "RvY_10268"; transcript_id "RvY_10268.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1251798 1251818 . - . gene_id "RvY_10268"; transcript_id "RvY_10268.1"; Scaffold005 rebuild exon 1252638 1252925 . - . gene_id "RvY_10268"; transcript_id "RvY_10268.1"; Scaffold005 rebuild exon 1253008 1253358 . - . gene_id "RvY_10268"; transcript_id "RvY_10268.1"; Scaffold005 rebuild transcript 1254406 1255071 . - . gene_id "RvY_10269"; transcript_id "RvY_10269.1"; annotation "hypothetical protein."; Pfam "[Pex19] Pex19 protein family"; Scaffold005 rebuild exon 1254406 1255071 . - . gene_id "RvY_10269"; transcript_id "RvY_10269.1"; Scaffold005 rebuild transcript 1256145 1257180 . + . gene_id "RvY_10270"; transcript_id "RvY_10270.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1256145 1256156 . + . gene_id "RvY_10270"; transcript_id "RvY_10270.1"; Scaffold005 rebuild exon 1256842 1257180 . + . gene_id "RvY_10270"; transcript_id "RvY_10270.1"; Scaffold005 rebuild transcript 1257241 1257507 . - . gene_id "RvY_10271"; transcript_id "RvY_10271.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1257241 1257507 . - . gene_id "RvY_10271"; transcript_id "RvY_10271.1"; Scaffold005 rebuild transcript 1257522 1257752 . + . gene_id "RvY_10272"; transcript_id "RvY_10272.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1257522 1257752 . + . gene_id "RvY_10272"; transcript_id "RvY_10272.1"; Scaffold005 rebuild transcript 1259209 1260544 . + . gene_id "RvY_10273"; transcript_id "RvY_10273.1"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold005 rebuild exon 1259209 1259500 . + . gene_id "RvY_10273"; transcript_id "RvY_10273.1"; Scaffold005 rebuild exon 1259575 1259731 . + . gene_id "RvY_10273"; transcript_id "RvY_10273.1"; Scaffold005 rebuild exon 1259800 1259984 . + . gene_id "RvY_10273"; transcript_id "RvY_10273.1"; Scaffold005 rebuild exon 1260046 1260243 . + . gene_id "RvY_10273"; transcript_id "RvY_10273.1"; Scaffold005 rebuild exon 1260321 1260544 . + . gene_id "RvY_10273"; transcript_id "RvY_10273.1"; Scaffold005 rebuild transcript 1260566 1261318 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1260566 1260959 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.1"; Scaffold005 rebuild exon 1261038 1261318 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.1"; Scaffold005 rebuild transcript 1260859 1261476 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.2"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1260859 1260959 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.2"; Scaffold005 rebuild exon 1261038 1261378 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.2"; Scaffold005 rebuild exon 1261448 1261476 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.2"; Scaffold005 rebuild transcript 1260859 1261368 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.3"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1260859 1260959 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.3"; Scaffold005 rebuild exon 1261038 1261368 . - . gene_id "RvY_10274"; transcript_id "RvY_10274.3"; Scaffold005 rebuild transcript 1261481 1261887 . - . gene_id "RvY_10275"; transcript_id "RvY_10275.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1261481 1261697 . - . gene_id "RvY_10275"; transcript_id "RvY_10275.1"; Scaffold005 rebuild exon 1261775 1261887 . - . gene_id "RvY_10275"; transcript_id "RvY_10275.1"; Scaffold005 rebuild transcript 1262906 1277531 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; gene_name "USP34"; annotation "Ubiquitin carboxyl-terminal hydrolase 34"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; EC "EC3.1.2.15"; KO "K11853"; similar_genes "UBP34_MOUSE(e-value:1.8e-67;bit-score:253.0)"; Scaffold005 rebuild exon 1262906 1262969 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1263046 1263133 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1263190 1263754 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1263822 1263986 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1264204 1264698 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1264758 1265018 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1265271 1265600 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1265670 1266030 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1266178 1266379 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1266444 1267372 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1267608 1267827 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1267887 1268134 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1268429 1268925 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1269229 1269559 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1269777 1270112 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1270174 1270523 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1271351 1271657 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1271723 1272296 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1272518 1272929 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1273315 1273627 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1273692 1273941 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1274019 1274442 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1274627 1274854 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1274918 1275199 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1275258 1275602 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1275798 1276370 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild exon 1277217 1277531 . + . gene_id "RvY_10276"; transcript_id "RvY_10276.1"; Scaffold005 rebuild transcript 1277640 1277939 . - . gene_id "RvY_10277"; transcript_id "RvY_10277.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1277640 1277939 . - . gene_id "RvY_10277"; transcript_id "RvY_10277.1"; Scaffold005 rebuild transcript 1278266 1278899 . + . gene_id "RvY_10278"; transcript_id "RvY_10278.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1278266 1278458 . + . gene_id "RvY_10278"; transcript_id "RvY_10278.1"; Scaffold005 rebuild exon 1278556 1278662 . + . gene_id "RvY_10278"; transcript_id "RvY_10278.1"; Scaffold005 rebuild exon 1278759 1278899 . + . gene_id "RvY_10278"; transcript_id "RvY_10278.1"; Scaffold005 rebuild transcript 1279143 1282161 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1279143 1279588 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1279697 1279840 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1280036 1280161 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1280223 1280351 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1280413 1280888 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1280953 1281244 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1281906 1282043 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild exon 1282113 1282161 . - . gene_id "RvY_10279"; transcript_id "RvY_10279.1"; Scaffold005 rebuild transcript 1282164 1282508 . + . gene_id "RvY_10280"; transcript_id "RvY_10280.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1282164 1282508 . + . gene_id "RvY_10280"; transcript_id "RvY_10280.1"; Scaffold005 rebuild transcript 1282916 1284958 . + . gene_id "RvY_10281"; transcript_id "RvY_10281.1"; gene_name "CASP3"; annotation "caspase 3 [EC:3.4.22.56]"; Pfam "[Peptidase_C14] Caspase domain"; CDD "Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the Scaffold005 rebuild exon 1282916 1283315 . + . gene_id "RvY_10281"; transcript_id "RvY_10281.1"; Scaffold005 rebuild exon 1283464 1283796 . + . gene_id "RvY_10281"; transcript_id "RvY_10281.1"; Scaffold005 rebuild exon 1283855 1284330 . + . gene_id "RvY_10281"; transcript_id "RvY_10281.1"; Scaffold005 rebuild exon 1284590 1284958 . + . gene_id "RvY_10281"; transcript_id "RvY_10281.1"; Scaffold005 rebuild transcript 1285941 1290064 . + . gene_id "RvY_10282"; transcript_id "RvY_10282.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1285941 1286181 . + . gene_id "RvY_10282"; transcript_id "RvY_10282.1"; Scaffold005 rebuild exon 1286372 1286542 . + . gene_id "RvY_10282"; transcript_id "RvY_10282.1"; Scaffold005 rebuild exon 1287241 1287364 . + . gene_id "RvY_10282"; transcript_id "RvY_10282.1"; Scaffold005 rebuild exon 1289702 1289912 . + . gene_id "RvY_10282"; transcript_id "RvY_10282.1"; Scaffold005 rebuild exon 1290002 1290064 . + . gene_id "RvY_10282"; transcript_id "RvY_10282.1"; Scaffold005 rebuild transcript 1287987 1288205 . - . gene_id "RvY_10283"; transcript_id "RvY_10283.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1287987 1288205 . - . gene_id "RvY_10283"; transcript_id "RvY_10283.1"; Scaffold005 rebuild transcript 1290505 1291498 . - . gene_id "RvY_10284"; transcript_id "RvY_10284.1"; annotation "UPF0468 protein CG5343"; Pfam "[DUF667]"; similar_genes "U0468_DROME(e-value:2.5e-90;bit-score:329.0)"; Scaffold005 rebuild exon 1290505 1290747 . - . gene_id "RvY_10284"; transcript_id "RvY_10284.1"; Scaffold005 rebuild exon 1290814 1291002 . - . gene_id "RvY_10284"; transcript_id "RvY_10284.1"; Scaffold005 rebuild exon 1291076 1291187 . - . gene_id "RvY_10284"; transcript_id "RvY_10284.1"; Scaffold005 rebuild exon 1291258 1291337 . - . gene_id "RvY_10284"; transcript_id "RvY_10284.1"; Scaffold005 rebuild exon 1291415 1291498 . - . gene_id "RvY_10284"; transcript_id "RvY_10284.1"; Scaffold005 rebuild transcript 1292165 1294642 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; annotation "putative Bestrophin-2"; Pfam "[Bestrophin] Bestrophin, RFP-TM, chloride channel"; KO "K13879"; similar_genes "BEST2_MOUSE(e-value:1.3e-40;bit-score:164.0)"; Scaffold005 rebuild exon 1292165 1292490 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1292554 1292688 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1292770 1292829 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1292895 1293240 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1293297 1293500 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1293558 1293613 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1293678 1293812 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1293886 1294032 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1294098 1294343 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild exon 1294477 1294642 . + . gene_id "RvY_10285"; transcript_id "RvY_10285.1"; Scaffold005 rebuild transcript 1295028 1296627 . - . gene_id "RvY_10286"; transcript_id "RvY_10286.1"; gene_name "BUR6"; annotation "hypothetical protein."; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone"; CDD "Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]"; similar_genes "NC2A_RAT(e-value:3.5e-11;bit-score:66.0)"; Scaffold005 rebuild exon 1295028 1295571 . - . gene_id "RvY_10286"; transcript_id "RvY_10286.1"; Scaffold005 rebuild exon 1295897 1296627 . - . gene_id "RvY_10286"; transcript_id "RvY_10286.1"; Scaffold005 rebuild transcript 1297025 1297345 . + . gene_id "RvY_10287"; transcript_id "RvY_10287.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1297025 1297345 . + . gene_id "RvY_10287"; transcript_id "RvY_10287.1"; Scaffold005 rebuild transcript 1298150 1300135 . - . gene_id "RvY_10288"; transcript_id "RvY_10288.1"; gene_name "RPB12"; annotation "DNA-directed RNA Polymerase II subunit K"; Pfam "[DNA_RNApol_7kD] DNA directed RNA polymerase, 7 kDa subunit"; CDD "RNA polymerase subunit CX. present in RNA polymerase I, II and III"; KO "K03009"; similar_genes "RPAB4_HUMAN(e-value:4.7e-15;bit-score:79.0)"; Scaffold005 rebuild exon 1298150 1298425 . - . gene_id "RvY_10288"; transcript_id "RvY_10288.1"; Scaffold005 rebuild exon 1298508 1298700 . - . gene_id "RvY_10288"; transcript_id "RvY_10288.1"; Scaffold005 rebuild exon 1300014 1300135 . - . gene_id "RvY_10288"; transcript_id "RvY_10288.1"; Scaffold005 rebuild transcript 1299585 1302104 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; annotation "(1)putative Bestrophin-1(2)hypothetical protein."; Pfam "[Bestrophin] Bestrophin, RFP-TM, chloride channel"; KO "(1)K13879"; similar_genes "(1)BEST1_PIG(e-value:6.0e-28;bit-score:122.0)(2)BEST3_MOUSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold005 rebuild exon 1299585 1299763 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; Scaffold005 rebuild exon 1300169 1300966 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; Scaffold005 rebuild exon 1301033 1301164 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; Scaffold005 rebuild exon 1301244 1301396 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; Scaffold005 rebuild exon 1301451 1301723 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; Scaffold005 rebuild exon 1301858 1302104 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.1"; Scaffold005 rebuild transcript 1299585 1300970 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.2"; annotation "(1)putative Bestrophin-1(2)hypothetical protein."; Pfam "[Bestrophin] Bestrophin, RFP-TM, chloride channel"; KO "(1)K13879"; similar_genes "(1)BEST1_PIG(e-value:6.0e-28;bit-score:122.0)(2)BEST3_MOUSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold005 rebuild exon 1299585 1299763 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.2"; Scaffold005 rebuild exon 1300169 1300970 . + . gene_id "RvY_10289"; transcript_id "RvY_10289.2"; Scaffold005 rebuild transcript 1303089 1306152 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; annotation "putative Bestrophin-3"; Pfam "[Bestrophin] Bestrophin, RFP-TM, chloride channel"; KO "K13878"; similar_genes "BEST3_HUMAN(e-value:3.4e-43;bit-score:173.0)"; Scaffold005 rebuild exon 1303089 1303267 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1303336 1303470 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1303544 1303754 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1303818 1303975 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1304056 1304092 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1304159 1304284 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1304369 1304446 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1304537 1304592 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1304655 1304786 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1304848 1305027 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1305214 1305627 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild exon 1306071 1306152 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.1"; Scaffold005 rebuild transcript 1303089 1305631 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; annotation "putative Bestrophin-3"; Pfam "[Bestrophin] Bestrophin, RFP-TM, chloride channel"; KO "K13878"; similar_genes "BEST3_HUMAN(e-value:3.4e-43;bit-score:173.0)"; Scaffold005 rebuild exon 1303089 1303267 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1303336 1303470 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1303544 1303754 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1303818 1303975 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1304056 1304092 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1304159 1304284 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1304369 1304446 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1304537 1304592 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1304655 1304786 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1304848 1305027 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild exon 1305214 1305631 . + . gene_id "RvY_10290"; transcript_id "RvY_10290.2"; Scaffold005 rebuild transcript 1310059 1317194 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; annotation "hypothetical protein."; Pfam "[Receptor_IA-2] Protein-tyrosine phosphatase receptor IA-2"; Scaffold005 rebuild exon 1310059 1310146 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1311743 1311793 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1312304 1312636 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1312832 1313539 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1313890 1314281 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1314506 1314782 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1315037 1315538 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1315835 1315921 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1316010 1316315 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1316406 1316489 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1316689 1316842 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild exon 1316922 1317194 . + . gene_id "RvY_10291"; transcript_id "RvY_10291.1"; Scaffold005 rebuild transcript 1318024 1320048 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; gene_name "PTPRN"; annotation "Receptor-type tyrosine-protein phosphatase N2"; Pfam "[Y_phosphatase] Protein-tyrosine phosphatase"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K07817"; similar_genes "PTPR2_RAT(e-value:5.0e-91;bit-score:331.0)"; Scaffold005 rebuild exon 1318024 1318157 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild exon 1318377 1318431 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild exon 1318582 1318729 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild exon 1318903 1318976 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild exon 1319128 1319205 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild exon 1319322 1319608 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild exon 1319781 1320048 . + . gene_id "RvY_10292"; transcript_id "RvY_10292.1"; Scaffold005 rebuild transcript 1323859 1327551 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; gene_name "SENP1"; annotation "putative Sentrin-specific protease"; Pfam "[Peptidase_C48] Ulp1 protease family, C-terminal catalytic domain"; CDD "Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.22.-"; KO "K08592"; similar_genes "SENP_CAEEL(e-value:5.5e-35;bit-score:145.0)"; Scaffold005 rebuild exon 1323859 1323927 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1324005 1324100 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1324178 1324286 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1324352 1324431 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1324496 1324702 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1324975 1325117 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1325194 1325266 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1325347 1325419 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1325550 1325664 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1325875 1325919 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1325995 1326271 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1326345 1326438 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1326756 1326913 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1326978 1327216 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1327290 1327336 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild exon 1327442 1327551 . - . gene_id "RvY_10293"; transcript_id "RvY_10293.1"; Scaffold005 rebuild transcript 1328717 1329400 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1328717 1328927 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.1"; Scaffold005 rebuild exon 1329051 1329400 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.1"; Scaffold005 rebuild transcript 1329361 1329660 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1329361 1329660 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.2"; Scaffold005 rebuild transcript 1328717 1329001 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1328717 1329001 . + . gene_id "RvY_10294"; transcript_id "RvY_10294.3"; Scaffold005 rebuild transcript 1330617 1335354 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; gene_name "FRK"; annotation "Tyrosine-protein kinase Src42A"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[SH3_2] Variant SH3 domain|[SH2]|[SH3_1] SH3 domain"; CDD "Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life."; EC "EC2.7.10.2"; KO "K08892"; similar_genes "SRC42_DROME(e-value:6.9e-133;bit-score:471.0)"; Scaffold005 rebuild exon 1330617 1330828 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1331148 1331304 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1331658 1332004 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1332084 1332252 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1332802 1332965 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1333735 1333856 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1333963 1334309 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild exon 1335259 1335354 . - . gene_id "RvY_10295"; transcript_id "RvY_10295.1"; Scaffold005 rebuild transcript 1339692 1345663 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; annotation "hypothetical protein."; Pfam "[RPEL] RPEL repeat"; similar_genes "PHAR1_CHICK(e-value:7.4e-20;bit-score:95.0)"; Scaffold005 rebuild exon 1339692 1339752 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1340602 1340970 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1341751 1341837 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1342320 1342430 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1342899 1343210 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1343307 1343350 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1343970 1344111 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1344226 1344378 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1344676 1344835 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1344968 1345023 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1345095 1345144 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1345269 1345406 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1345490 1345566 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild exon 1345648 1345663 . + . gene_id "RvY_10296"; transcript_id "RvY_10296.1"; Scaffold005 rebuild transcript 1346166 1348562 . - . gene_id "RvY_10297"; transcript_id "RvY_10297.1"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold005 rebuild exon 1346166 1348562 . - . gene_id "RvY_10297"; transcript_id "RvY_10297.1"; Scaffold005 rebuild transcript 1352807 1353022 . + . gene_id "RvY_10298"; transcript_id "RvY_10298.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1352807 1353022 . + . gene_id "RvY_10298"; transcript_id "RvY_10298.1"; Scaffold005 rebuild transcript 1354870 1355615 . - . gene_id "RvY_10299"; transcript_id "RvY_10299.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1354870 1355231 . - . gene_id "RvY_10299"; transcript_id "RvY_10299.1"; Scaffold005 rebuild exon 1355312 1355615 . - . gene_id "RvY_10299"; transcript_id "RvY_10299.1"; Scaffold005 rebuild transcript 1357166 1357637 . - . gene_id "RvY_10300"; transcript_id "RvY_10300.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1357166 1357260 . - . gene_id "RvY_10300"; transcript_id "RvY_10300.1"; Scaffold005 rebuild exon 1357349 1357637 . - . gene_id "RvY_10300"; transcript_id "RvY_10300.1"; Scaffold005 rebuild transcript 1360350 1360748 . + . gene_id "RvY_10301"; transcript_id "RvY_10301.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1360350 1360748 . + . gene_id "RvY_10301"; transcript_id "RvY_10301.1"; Scaffold005 rebuild transcript 1361759 1364153 . + . gene_id "RvY_10302"; transcript_id "RvY_10302.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1361759 1362636 . + . gene_id "RvY_10302"; transcript_id "RvY_10302.1"; Scaffold005 rebuild exon 1363585 1363808 . + . gene_id "RvY_10302"; transcript_id "RvY_10302.1"; Scaffold005 rebuild exon 1364083 1364153 . + . gene_id "RvY_10302"; transcript_id "RvY_10302.1"; Scaffold005 rebuild transcript 1366700 1367477 . - . gene_id "RvY_10303"; transcript_id "RvY_10303.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1366700 1366950 . - . gene_id "RvY_10303"; transcript_id "RvY_10303.1"; Scaffold005 rebuild exon 1367207 1367477 . - . gene_id "RvY_10303"; transcript_id "RvY_10303.1"; Scaffold005 rebuild transcript 1371065 1374578 . + . gene_id "RvY_10304"; transcript_id "RvY_10304.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1371065 1373912 . + . gene_id "RvY_10304"; transcript_id "RvY_10304.1"; Scaffold005 rebuild exon 1374493 1374578 . + . gene_id "RvY_10304"; transcript_id "RvY_10304.1"; Scaffold005 rebuild transcript 1376731 1378020 . - . gene_id "RvY_10305"; transcript_id "RvY_10305.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1376731 1376743 . - . gene_id "RvY_10305"; transcript_id "RvY_10305.1"; Scaffold005 rebuild exon 1376998 1377153 . - . gene_id "RvY_10305"; transcript_id "RvY_10305.1"; Scaffold005 rebuild exon 1377228 1377765 . - . gene_id "RvY_10305"; transcript_id "RvY_10305.1"; Scaffold005 rebuild exon 1377903 1378020 . - . gene_id "RvY_10305"; transcript_id "RvY_10305.1"; Scaffold005 rebuild transcript 1379439 1382412 . + . gene_id "RvY_10306"; transcript_id "RvY_10306.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1379439 1379444 . + . gene_id "RvY_10306"; transcript_id "RvY_10306.1"; Scaffold005 rebuild exon 1381645 1382412 . + . gene_id "RvY_10306"; transcript_id "RvY_10306.1"; Scaffold005 rebuild transcript 1383941 1384627 . - . gene_id "RvY_10307"; transcript_id "RvY_10307.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1383941 1384627 . - . gene_id "RvY_10307"; transcript_id "RvY_10307.1"; Scaffold005 rebuild transcript 1385248 1385493 . + . gene_id "RvY_10308"; transcript_id "RvY_10308.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1385248 1385493 . + . gene_id "RvY_10308"; transcript_id "RvY_10308.1"; Scaffold005 rebuild transcript 1394679 1394924 . - . gene_id "RvY_10309"; transcript_id "RvY_10309.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1394679 1394924 . - . gene_id "RvY_10309"; transcript_id "RvY_10309.1"; Scaffold005 rebuild transcript 1395306 1395782 . + . gene_id "RvY_10310"; transcript_id "RvY_10310.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1395306 1395471 . + . gene_id "RvY_10310"; transcript_id "RvY_10310.1"; Scaffold005 rebuild exon 1395643 1395782 . + . gene_id "RvY_10310"; transcript_id "RvY_10310.1"; Scaffold005 rebuild transcript 1395857 1397813 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1395857 1395939 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild exon 1396027 1396193 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild exon 1396417 1396524 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild exon 1396689 1396787 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild exon 1396876 1397016 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild exon 1397326 1397535 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild exon 1397614 1397813 . + . gene_id "RvY_10311"; transcript_id "RvY_10311.1"; Scaffold005 rebuild transcript 1398246 1400219 . - . gene_id "RvY_10312"; transcript_id "RvY_10312.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1398246 1398370 . - . gene_id "RvY_10312"; transcript_id "RvY_10312.1"; Scaffold005 rebuild exon 1398700 1399261 . - . gene_id "RvY_10312"; transcript_id "RvY_10312.1"; Scaffold005 rebuild exon 1399428 1400219 . - . gene_id "RvY_10312"; transcript_id "RvY_10312.1"; Scaffold005 rebuild transcript 1400603 1401034 . - . gene_id "RvY_10313"; transcript_id "RvY_10313.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1400603 1401034 . - . gene_id "RvY_10313"; transcript_id "RvY_10313.1"; Scaffold005 rebuild transcript 1401035 1406144 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1401035 1401305 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; Scaffold005 rebuild exon 1401665 1401787 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; Scaffold005 rebuild exon 1402024 1402215 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; Scaffold005 rebuild exon 1404257 1404776 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; Scaffold005 rebuild exon 1404964 1405921 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; Scaffold005 rebuild exon 1405968 1406144 . - . gene_id "RvY_10314"; transcript_id "RvY_10314.1"; Scaffold005 rebuild transcript 1408155 1408662 . - . gene_id "RvY_10315"; transcript_id "RvY_10315.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1408155 1408274 . - . gene_id "RvY_10315"; transcript_id "RvY_10315.1"; Scaffold005 rebuild exon 1408594 1408662 . - . gene_id "RvY_10315"; transcript_id "RvY_10315.1"; Scaffold005 rebuild transcript 1408851 1409150 . + . gene_id "RvY_10316"; transcript_id "RvY_10316.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1408851 1409150 . + . gene_id "RvY_10316"; transcript_id "RvY_10316.1"; Scaffold005 rebuild transcript 1410929 1411915 . - . gene_id "RvY_10317"; transcript_id "RvY_10317.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1410929 1411243 . - . gene_id "RvY_10317"; transcript_id "RvY_10317.1"; Scaffold005 rebuild exon 1411769 1411915 . - . gene_id "RvY_10317"; transcript_id "RvY_10317.1"; Scaffold005 rebuild transcript 1414329 1418469 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "WSC3_YEAST(e-value:1.4e-12;bit-score:71.0)"; Scaffold005 rebuild exon 1414329 1414560 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.1"; Scaffold005 rebuild exon 1417545 1417721 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.1"; Scaffold005 rebuild exon 1417814 1418469 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.1"; Scaffold005 rebuild transcript 1417628 1418469 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.2"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "WSC3_YEAST(e-value:1.4e-12;bit-score:71.0)"; Scaffold005 rebuild exon 1417628 1417721 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.2"; Scaffold005 rebuild exon 1417814 1418469 . + . gene_id "RvY_10318"; transcript_id "RvY_10318.2"; Scaffold005 rebuild transcript 1424774 1425391 . - . gene_id "RvY_10319"; transcript_id "RvY_10319.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1424774 1425196 . - . gene_id "RvY_10319"; transcript_id "RvY_10319.1"; Scaffold005 rebuild exon 1425314 1425391 . - . gene_id "RvY_10319"; transcript_id "RvY_10319.1"; Scaffold005 rebuild transcript 1425808 1426035 . + . gene_id "RvY_10320"; transcript_id "RvY_10320.1"; gene_name "PRK08279"; annotation "hypothetical protein."; CDD "acyl-CoA synthetase; Validated"; Scaffold005 rebuild exon 1425808 1426035 . + . gene_id "RvY_10320"; transcript_id "RvY_10320.1"; Scaffold005 rebuild transcript 1426332 1426505 . + . gene_id "RvY_10321"; transcript_id "RvY_10321.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1426332 1426505 . + . gene_id "RvY_10321"; transcript_id "RvY_10321.1"; Scaffold005 rebuild transcript 1426796 1427017 . - . gene_id "RvY_10322"; transcript_id "RvY_10322.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1426796 1427017 . - . gene_id "RvY_10322"; transcript_id "RvY_10322.1"; Scaffold005 rebuild transcript 1427663 1429351 . - . gene_id "RvY_10323"; transcript_id "RvY_10323.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1427663 1427960 . - . gene_id "RvY_10323"; transcript_id "RvY_10323.1"; Scaffold005 rebuild exon 1428169 1428788 . - . gene_id "RvY_10323"; transcript_id "RvY_10323.1"; Scaffold005 rebuild exon 1428817 1428941 . - . gene_id "RvY_10323"; transcript_id "RvY_10323.1"; Scaffold005 rebuild exon 1429117 1429351 . - . gene_id "RvY_10323"; transcript_id "RvY_10323.1"; Scaffold005 rebuild transcript 1429232 1429838 . + . gene_id "RvY_10324"; transcript_id "RvY_10324.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1429232 1429592 . + . gene_id "RvY_10324"; transcript_id "RvY_10324.1"; Scaffold005 rebuild exon 1429717 1429838 . + . gene_id "RvY_10324"; transcript_id "RvY_10324.1"; Scaffold005 rebuild transcript 1430086 1430866 . + . gene_id "RvY_10325"; transcript_id "RvY_10325.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1430086 1430226 . + . gene_id "RvY_10325"; transcript_id "RvY_10325.1"; Scaffold005 rebuild exon 1430353 1430658 . + . gene_id "RvY_10325"; transcript_id "RvY_10325.1"; Scaffold005 rebuild exon 1430717 1430866 . + . gene_id "RvY_10325"; transcript_id "RvY_10325.1"; Scaffold005 rebuild transcript 1431497 1431903 . + . gene_id "RvY_10326"; transcript_id "RvY_10326.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1431497 1431680 . + . gene_id "RvY_10326"; transcript_id "RvY_10326.1"; Scaffold005 rebuild exon 1431743 1431903 . + . gene_id "RvY_10326"; transcript_id "RvY_10326.1"; Scaffold005 rebuild transcript 1433291 1433822 . + . gene_id "RvY_10327"; transcript_id "RvY_10327.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1433291 1433320 . + . gene_id "RvY_10327"; transcript_id "RvY_10327.1"; Scaffold005 rebuild exon 1433460 1433822 . + . gene_id "RvY_10327"; transcript_id "RvY_10327.1"; Scaffold005 rebuild transcript 1433935 1434216 . + . gene_id "RvY_10328"; transcript_id "RvY_10328.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1433935 1434216 . + . gene_id "RvY_10328"; transcript_id "RvY_10328.1"; Scaffold005 rebuild transcript 1434289 1435164 . + . gene_id "RvY_10329"; transcript_id "RvY_10329.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 1434289 1435164 . + . gene_id "RvY_10329"; transcript_id "RvY_10329.1"; Scaffold005 rebuild transcript 1437010 1438249 . + . gene_id "RvY_10330"; transcript_id "RvY_10330.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1437010 1437478 . + . gene_id "RvY_10330"; transcript_id "RvY_10330.1"; Scaffold005 rebuild exon 1437819 1438249 . + . gene_id "RvY_10330"; transcript_id "RvY_10330.1"; Scaffold005 rebuild transcript 1438897 1439308 . - . gene_id "RvY_10331"; transcript_id "RvY_10331.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1438897 1439162 . - . gene_id "RvY_10331"; transcript_id "RvY_10331.1"; Scaffold005 rebuild exon 1439287 1439308 . - . gene_id "RvY_10331"; transcript_id "RvY_10331.1"; Scaffold005 rebuild transcript 1439524 1439868 . - . gene_id "RvY_10332"; transcript_id "RvY_10332.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1439524 1439868 . - . gene_id "RvY_10332"; transcript_id "RvY_10332.1"; Scaffold005 rebuild transcript 1445093 1446418 . - . gene_id "RvY_10333"; transcript_id "RvY_10333.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1445093 1445772 . - . gene_id "RvY_10333"; transcript_id "RvY_10333.1"; Scaffold005 rebuild exon 1446340 1446418 . - . gene_id "RvY_10333"; transcript_id "RvY_10333.1"; Scaffold005 rebuild transcript 1453873 1454599 . - . gene_id "RvY_10334"; transcript_id "RvY_10334.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1453873 1454175 . - . gene_id "RvY_10334"; transcript_id "RvY_10334.1"; Scaffold005 rebuild exon 1454246 1454599 . - . gene_id "RvY_10334"; transcript_id "RvY_10334.1"; Scaffold005 rebuild transcript 1454144 1454599 . - . gene_id "RvY_10334"; transcript_id "RvY_10334.2"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1454144 1454599 . - . gene_id "RvY_10334"; transcript_id "RvY_10334.2"; Scaffold005 rebuild transcript 1462042 1465706 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; gene_name "MA3"; annotation "hypothetical protein."; Pfam "[MA3]|[MIF4G]"; CDD "Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) ""Novel eIF4G domain homologues"" in press"; similar_genes "NOM1_MOUSE(e-value:3.8e-21;bit-score:99.0)"; Scaffold005 rebuild exon 1462042 1462464 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1462570 1462734 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1462997 1463408 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1463685 1463781 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1463865 1464083 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1464176 1464304 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1464381 1464896 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1465007 1465148 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1465281 1465445 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild exon 1465530 1465706 . - . gene_id "RvY_10335"; transcript_id "RvY_10335.1"; Scaffold005 rebuild transcript 1466726 1468424 . + . gene_id "RvY_10336"; transcript_id "RvY_10336.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR13_PONAB(e-value:5.2e-10;bit-score:62.0)"; Scaffold005 rebuild exon 1466726 1467068 . + . gene_id "RvY_10336"; transcript_id "RvY_10336.1"; Scaffold005 rebuild exon 1467265 1467579 . + . gene_id "RvY_10336"; transcript_id "RvY_10336.1"; Scaffold005 rebuild exon 1467658 1468424 . + . gene_id "RvY_10336"; transcript_id "RvY_10336.1"; Scaffold005 rebuild transcript 1468751 1471339 . - . gene_id "RvY_10337"; transcript_id "RvY_10337.1"; gene_name "BACK"; annotation "hypothetical protein."; Pfam "[BACK] BTB And C-terminal Kelch"; CDD "BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues."; Scaffold005 rebuild exon 1468751 1469434 . - . gene_id "RvY_10337"; transcript_id "RvY_10337.1"; Scaffold005 rebuild exon 1469547 1469649 . - . gene_id "RvY_10337"; transcript_id "RvY_10337.1"; Scaffold005 rebuild exon 1469757 1470261 . - . gene_id "RvY_10337"; transcript_id "RvY_10337.1"; Scaffold005 rebuild exon 1470442 1471014 . - . gene_id "RvY_10337"; transcript_id "RvY_10337.1"; Scaffold005 rebuild exon 1471138 1471339 . - . gene_id "RvY_10337"; transcript_id "RvY_10337.1"; Scaffold005 rebuild transcript 1471914 1472430 . - . gene_id "RvY_10338"; transcript_id "RvY_10338.1"; gene_name "TXNL4A"; annotation "Thioredoxin-like protein 4A"; Pfam "[DIM1] Mitosis protein DIM1"; KO "K12859"; similar_genes "TXN4A_HUMAN(e-value:5.8e-77;bit-score:285.0)"; Scaffold005 rebuild exon 1471914 1472213 . - . gene_id "RvY_10338"; transcript_id "RvY_10338.1"; Scaffold005 rebuild exon 1472302 1472430 . - . gene_id "RvY_10338"; transcript_id "RvY_10338.1"; Scaffold005 rebuild transcript 1473279 1476963 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain"; Scaffold005 rebuild exon 1473279 1473333 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; Scaffold005 rebuild exon 1475272 1475568 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; Scaffold005 rebuild exon 1475664 1475804 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; Scaffold005 rebuild exon 1475901 1476038 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; Scaffold005 rebuild exon 1476141 1476413 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; Scaffold005 rebuild exon 1476722 1476963 . + . gene_id "RvY_10339"; transcript_id "RvY_10339.1"; Scaffold005 rebuild transcript 1477880 1479014 . + . gene_id "RvY_10340"; transcript_id "RvY_10340.1"; gene_name "H2A"; annotation "putative Histone H2A type 2-C"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone 2A."; KO "K11251"; similar_genes "H2A2C_BOVIN(e-value:1.5e-37;bit-score:154.0)"; Scaffold005 rebuild exon 1477880 1477975 . + . gene_id "RvY_10340"; transcript_id "RvY_10340.1"; Scaffold005 rebuild exon 1478073 1478249 . + . gene_id "RvY_10340"; transcript_id "RvY_10340.1"; Scaffold005 rebuild exon 1478451 1479014 . + . gene_id "RvY_10340"; transcript_id "RvY_10340.1"; Scaffold005 rebuild transcript 1479200 1480387 . - . gene_id "RvY_10341"; transcript_id "RvY_10341.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold005 rebuild exon 1479200 1480387 . - . gene_id "RvY_10341"; transcript_id "RvY_10341.1"; Scaffold005 rebuild transcript 1480396 1480659 . + . gene_id "RvY_10342"; transcript_id "RvY_10342.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1480396 1480470 . + . gene_id "RvY_10342"; transcript_id "RvY_10342.1"; Scaffold005 rebuild exon 1480570 1480659 . + . gene_id "RvY_10342"; transcript_id "RvY_10342.1"; Scaffold005 rebuild transcript 1480860 1481571 . - . gene_id "RvY_10343"; transcript_id "RvY_10343.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1480860 1481401 . - . gene_id "RvY_10343"; transcript_id "RvY_10343.1"; Scaffold005 rebuild exon 1481517 1481571 . - . gene_id "RvY_10343"; transcript_id "RvY_10343.1"; Scaffold005 rebuild transcript 1483000 1483422 . + . gene_id "RvY_10344"; transcript_id "RvY_10344.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1483000 1483422 . + . gene_id "RvY_10344"; transcript_id "RvY_10344.1"; Scaffold005 rebuild transcript 1483843 1484779 . - . gene_id "RvY_10345"; transcript_id "RvY_10345.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1483843 1484121 . - . gene_id "RvY_10345"; transcript_id "RvY_10345.1"; Scaffold005 rebuild exon 1484223 1484355 . - . gene_id "RvY_10345"; transcript_id "RvY_10345.1"; Scaffold005 rebuild exon 1484456 1484661 . - . gene_id "RvY_10345"; transcript_id "RvY_10345.1"; Scaffold005 rebuild exon 1484747 1484779 . - . gene_id "RvY_10345"; transcript_id "RvY_10345.1"; Scaffold005 rebuild transcript 1485388 1486766 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1485388 1485614 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild exon 1485692 1485763 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild exon 1485858 1485905 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild exon 1485999 1486075 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild exon 1486139 1486277 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild exon 1486353 1486446 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild exon 1486512 1486766 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.1"; Scaffold005 rebuild transcript 1485388 1486766 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1485388 1485614 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1485692 1485763 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1485858 1485905 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1485999 1486075 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1486139 1486277 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1486353 1486446 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1486512 1486603 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild exon 1486673 1486766 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.2"; Scaffold005 rebuild transcript 1485388 1486766 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1485388 1485614 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1485692 1485763 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1485858 1485905 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1485999 1486075 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1486139 1486277 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1486353 1486446 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1486512 1486594 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild exon 1486673 1486766 . - . gene_id "RvY_10346"; transcript_id "RvY_10346.3"; Scaffold005 rebuild transcript 1487137 1488041 . - . gene_id "RvY_10347"; transcript_id "RvY_10347.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 1487137 1487271 . - . gene_id "RvY_10347"; transcript_id "RvY_10347.1"; Scaffold005 rebuild exon 1487359 1487567 . - . gene_id "RvY_10347"; transcript_id "RvY_10347.1"; Scaffold005 rebuild exon 1487688 1487754 . - . gene_id "RvY_10347"; transcript_id "RvY_10347.1"; Scaffold005 rebuild exon 1487814 1488041 . - . gene_id "RvY_10347"; transcript_id "RvY_10347.1"; Scaffold005 rebuild transcript 1488708 1489662 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.1"; gene_name "GST_N_Sigma_like"; annotation "hypothetical protein."; Pfam "(2)[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 1488708 1489120 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.1"; Scaffold005 rebuild exon 1489194 1489260 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.1"; Scaffold005 rebuild exon 1489435 1489662 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.1"; Scaffold005 rebuild transcript 1488541 1489662 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.2"; gene_name "GST_N_Sigma_like"; annotation "hypothetical protein."; Pfam "(2)[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold005 rebuild exon 1488541 1488675 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.2"; Scaffold005 rebuild exon 1488918 1489120 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.2"; Scaffold005 rebuild exon 1489194 1489260 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.2"; Scaffold005 rebuild exon 1489435 1489662 . - . gene_id "RvY_10348"; transcript_id "RvY_10348.2"; Scaffold005 rebuild transcript 1490174 1491806 . - . gene_id "RvY_10349"; transcript_id "RvY_10349.1"; gene_name "MEP1A"; annotation "meprin A, alpha [EC:3.4.24.18]"; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1490174 1490457 . - . gene_id "RvY_10349"; transcript_id "RvY_10349.1"; Scaffold005 rebuild exon 1490546 1490739 . - . gene_id "RvY_10349"; transcript_id "RvY_10349.1"; Scaffold005 rebuild exon 1491317 1491443 . - . gene_id "RvY_10349"; transcript_id "RvY_10349.1"; Scaffold005 rebuild exon 1491509 1491587 . - . gene_id "RvY_10349"; transcript_id "RvY_10349.1"; Scaffold005 rebuild exon 1491645 1491806 . - . gene_id "RvY_10349"; transcript_id "RvY_10349.1"; Scaffold005 rebuild transcript 1491904 1492260 . - . gene_id "RvY_10350"; transcript_id "RvY_10350.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1491904 1492260 . - . gene_id "RvY_10350"; transcript_id "RvY_10350.1"; Scaffold005 rebuild transcript 1493942 1494121 . - . gene_id "RvY_10351"; transcript_id "RvY_10351.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1493942 1494121 . - . gene_id "RvY_10351"; transcript_id "RvY_10351.1"; Scaffold005 rebuild transcript 1496256 1503111 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; gene_name "HDAC4_5"; annotation "Histone deacetylase 4"; Pfam "[Hist_deacetyl] Histone deacetylase domain|[HDAC4_Gln] Glutamine rich N terminal domain of histone deacetylase 4"; EC "EC3.5.1.98"; KO "K11406"; similar_genes "HDAC4_CHICK(e-value:9.8e-109;bit-score:390.0)"; Scaffold005 rebuild exon 1496256 1496298 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1496625 1496966 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1497296 1497425 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1497530 1497630 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1498101 1498238 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1498463 1498572 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1499680 1499935 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1500126 1500475 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1500533 1500812 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1500969 1501220 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1501307 1501464 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1501568 1501623 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1501771 1502195 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1502385 1502603 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild exon 1502918 1503111 . + . gene_id "RvY_10352"; transcript_id "RvY_10352.1"; Scaffold005 rebuild transcript 1505398 1512199 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain|[F5_F8_type_C] F5/8 type C domain|[Sushi] Sushi domain (SCR repeat)"; Scaffold005 rebuild exon 1505398 1505473 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1505781 1505957 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1506536 1506745 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1507289 1507384 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1507866 1507991 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1508105 1508401 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1508527 1508572 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1508635 1509098 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1509354 1509713 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1509773 1509952 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1510012 1510365 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1510722 1510889 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1510949 1511125 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1511218 1511388 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1511625 1511654 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1511732 1511897 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild exon 1512043 1512199 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.1"; Scaffold005 rebuild transcript 1505398 1512042 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain|[F5_F8_type_C] F5/8 type C domain|[Sushi] Sushi domain (SCR repeat)"; Scaffold005 rebuild exon 1505398 1505473 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1505781 1505957 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1506536 1506745 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1507289 1507384 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1507866 1507991 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1508105 1508401 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1508527 1508572 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1508635 1509098 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1509354 1509713 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1509773 1509952 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1510012 1510365 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1510722 1510889 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1510949 1511125 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1511218 1511388 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1511625 1511654 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1511732 1511897 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild exon 1512009 1512042 . + . gene_id "RvY_10353"; transcript_id "RvY_10353.2"; Scaffold005 rebuild transcript 1513067 1514251 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; gene_name "PSMD10"; annotation "putative 26S proteasome non-ATPase regulatory subunit 10"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; KO "K06694"; similar_genes "PSD10_HUMAN(e-value:1.1e-31;bit-score:134.0)"; Scaffold005 rebuild exon 1513067 1513204 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; Scaffold005 rebuild exon 1513332 1513430 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; Scaffold005 rebuild exon 1513524 1513670 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; Scaffold005 rebuild exon 1513771 1513937 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; Scaffold005 rebuild exon 1514023 1514104 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; Scaffold005 rebuild exon 1514180 1514251 . + . gene_id "RvY_10354"; transcript_id "RvY_10354.1"; Scaffold005 rebuild transcript 1514512 1515578 . - . gene_id "RvY_10355"; transcript_id "RvY_10355.1"; annotation "hypothetical protein."; Pfam "[DUF3456] TLR4 regulator and MIR-interacting MSAP"; similar_genes "CNPY3_PIG(e-value:2.3e-10;bit-score:63.0)"; Scaffold005 rebuild exon 1514512 1514612 . - . gene_id "RvY_10355"; transcript_id "RvY_10355.1"; Scaffold005 rebuild exon 1514722 1514839 . - . gene_id "RvY_10355"; transcript_id "RvY_10355.1"; Scaffold005 rebuild exon 1514932 1515019 . - . gene_id "RvY_10355"; transcript_id "RvY_10355.1"; Scaffold005 rebuild exon 1515129 1515381 . - . gene_id "RvY_10355"; transcript_id "RvY_10355.1"; Scaffold005 rebuild exon 1515461 1515578 . - . gene_id "RvY_10355"; transcript_id "RvY_10355.1"; Scaffold005 rebuild transcript 1516192 1518210 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_16] Putative methyltransferase"; Scaffold005 rebuild exon 1516192 1516612 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild exon 1517016 1517165 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild exon 1517258 1517349 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild exon 1517426 1517497 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild exon 1517583 1517776 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild exon 1517847 1517945 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild exon 1518012 1518210 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.1"; Scaffold005 rebuild transcript 1516192 1517595 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.2"; annotation "hypothetical protein."; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_16] Putative methyltransferase"; Scaffold005 rebuild exon 1516192 1516612 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.2"; Scaffold005 rebuild exon 1517016 1517165 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.2"; Scaffold005 rebuild exon 1517258 1517349 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.2"; Scaffold005 rebuild exon 1517430 1517497 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.2"; Scaffold005 rebuild exon 1517583 1517595 . + . gene_id "RvY_10356"; transcript_id "RvY_10356.2"; Scaffold005 rebuild transcript 1518802 1519474 . - . gene_id "RvY_10357"; transcript_id "RvY_10357.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1518802 1518935 . - . gene_id "RvY_10357"; transcript_id "RvY_10357.1"; Scaffold005 rebuild exon 1519183 1519474 . - . gene_id "RvY_10357"; transcript_id "RvY_10357.1"; Scaffold005 rebuild transcript 1520402 1522267 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1520402 1520474 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1520546 1520709 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1520772 1520835 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1520922 1521008 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1521085 1521612 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1521687 1521758 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1521910 1521982 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild exon 1522060 1522267 . + . gene_id "RvY_10358"; transcript_id "RvY_10358.1"; Scaffold005 rebuild transcript 1522550 1523050 . - . gene_id "RvY_10359"; transcript_id "RvY_10359.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1522550 1522642 . - . gene_id "RvY_10359"; transcript_id "RvY_10359.1"; Scaffold005 rebuild exon 1522705 1522856 . - . gene_id "RvY_10359"; transcript_id "RvY_10359.1"; Scaffold005 rebuild exon 1522930 1523050 . - . gene_id "RvY_10359"; transcript_id "RvY_10359.1"; Scaffold005 rebuild transcript 1526865 1530611 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; gene_name "SpoVK"; annotation "hypothetical protein."; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; similar_genes "IQCA1_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold005 rebuild exon 1526865 1526906 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1526969 1527098 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1527345 1527772 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1527912 1528509 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1528736 1529569 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1529892 1530056 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1530132 1530412 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild exon 1530489 1530611 . + . gene_id "RvY_10360"; transcript_id "RvY_10360.1"; Scaffold005 rebuild transcript 1531074 1532467 . + . gene_id "RvY_10361"; transcript_id "RvY_10361.1"; gene_name "serA"; annotation "D-3-phosphoglycerate dehydrogenase"; Pfam "[2-Hacid_dh_C] D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain|[2-Hacid_dh] D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain"; CDD "D-3-phosphoglycerate dehydrogenase; Provisional"; EC "EC1.1.1.95"; KO "K00058"; similar_genes "SERA_MOUSE(e-value:2.6e-58;bit-score:223.0)"; Scaffold005 rebuild exon 1531074 1531368 . + . gene_id "RvY_10361"; transcript_id "RvY_10361.1"; Scaffold005 rebuild exon 1531800 1532467 . + . gene_id "RvY_10361"; transcript_id "RvY_10361.1"; Scaffold005 rebuild transcript 1533439 1538401 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; gene_name "K01191"; annotation "Alpha-mannosidase G"; Pfam "[Alpha-mann_mid] Alpha mannosidase, middle domain|[Glyco_hydro_38C] Glycosyl hydrolases family 38 C-terminal domain|[Glyco_hydro_38] Glycosyl hydrolases family 38 N-terminal domain"; CDD "Alpha-mannosidase [Carbohydrate transport and metabolism]"; EC "EC3.2.1.24"; KO "K01191"; similar_genes "MANG_DICDI(e-value:8.2e-68;bit-score:254.0)"; Scaffold005 rebuild exon 1533439 1533933 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1534662 1534961 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1535024 1535442 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1535505 1535874 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1536166 1536561 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1536815 1537245 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1537317 1537736 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild exon 1537957 1538401 . + . gene_id "RvY_10362"; transcript_id "RvY_10362.1"; Scaffold005 rebuild transcript 1538657 1540069 . - . gene_id "RvY_10363"; transcript_id "RvY_10363.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1538657 1540069 . - . gene_id "RvY_10363"; transcript_id "RvY_10363.1"; Scaffold005 rebuild transcript 1541001 1544895 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; annotation "hypothetical protein."; Pfam "[Clathrin] Region in Clathrin and VPS|[Pep3_Vps18] Pep3/Vps18/deep orange family"; similar_genes "VPS18_DANRE(e-value:2.8e-17;bit-score:86.0)"; Scaffold005 rebuild exon 1541001 1541846 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; Scaffold005 rebuild exon 1542083 1542652 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; Scaffold005 rebuild exon 1542874 1543174 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; Scaffold005 rebuild exon 1543283 1543850 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; Scaffold005 rebuild exon 1543930 1544507 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; Scaffold005 rebuild exon 1544696 1544895 . - . gene_id "RvY_10364"; transcript_id "RvY_10364.1"; Scaffold005 rebuild transcript 1545809 1547337 . + . gene_id "RvY_10365"; transcript_id "RvY_10365.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1545809 1546262 . + . gene_id "RvY_10365"; transcript_id "RvY_10365.1"; Scaffold005 rebuild exon 1546473 1546984 . + . gene_id "RvY_10365"; transcript_id "RvY_10365.1"; Scaffold005 rebuild exon 1547053 1547337 . + . gene_id "RvY_10365"; transcript_id "RvY_10365.1"; Scaffold005 rebuild transcript 1547695 1549110 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.18"; similar_genes "MEP1A_HUMAN(e-value:3.0e-10;bit-score:63.0)"; Scaffold005 rebuild exon 1547695 1547921 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild exon 1548000 1548071 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild exon 1548135 1548182 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild exon 1548400 1548482 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild exon 1548550 1548676 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild exon 1548741 1548828 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild exon 1548904 1549110 . - . gene_id "RvY_10366"; transcript_id "RvY_10366.1"; Scaffold005 rebuild transcript 1549826 1554754 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; annotation "hypothetical protein."; Pfam "[DUF3358]|[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; EC "EC3.4.11.3"; similar_genes "LCAP_RAT(e-value:1.3e-25;bit-score:114.0)"; Scaffold005 rebuild exon 1549826 1550027 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1550222 1550795 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1551089 1551380 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1551435 1551567 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1551638 1551792 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1551914 1552027 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1552100 1552237 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1552309 1552848 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1552929 1552984 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1553224 1553463 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1553522 1553806 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1554012 1554152 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1554219 1554282 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1554366 1554507 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild exon 1554579 1554754 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.1"; Scaffold005 rebuild transcript 1549826 1554754 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; annotation "hypothetical protein."; Pfam "[DUF3358]|[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; EC "EC3.4.11.3"; similar_genes "LCAP_RAT(e-value:1.3e-25;bit-score:114.0)"; Scaffold005 rebuild exon 1549826 1550027 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1550267 1550795 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1551089 1551380 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1551435 1551567 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1551638 1551792 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1551914 1552027 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1552100 1552237 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1552309 1552848 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1552929 1552984 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1553224 1553463 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1553522 1553806 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1554012 1554152 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1554219 1554282 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1554366 1554507 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild exon 1554579 1554754 . + . gene_id "RvY_10367"; transcript_id "RvY_10367.2"; Scaffold005 rebuild transcript 1555003 1556311 . - . gene_id "RvY_10368"; transcript_id "RvY_10368.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 1555003 1555266 . - . gene_id "RvY_10368"; transcript_id "RvY_10368.1"; Scaffold005 rebuild exon 1555329 1555723 . - . gene_id "RvY_10368"; transcript_id "RvY_10368.1"; Scaffold005 rebuild exon 1555954 1556311 . - . gene_id "RvY_10368"; transcript_id "RvY_10368.1"; Scaffold005 rebuild transcript 1556028 1556700 . + . gene_id "RvY_10369"; transcript_id "RvY_10369.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1556028 1556437 . + . gene_id "RvY_10369"; transcript_id "RvY_10369.1"; Scaffold005 rebuild exon 1556583 1556700 . + . gene_id "RvY_10369"; transcript_id "RvY_10369.1"; Scaffold005 rebuild transcript 1556435 1556897 . + . gene_id "RvY_10369"; transcript_id "RvY_10369.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1556435 1556437 . + . gene_id "RvY_10369"; transcript_id "RvY_10369.2"; Scaffold005 rebuild exon 1556583 1556897 . + . gene_id "RvY_10369"; transcript_id "RvY_10369.2"; Scaffold005 rebuild transcript 1557130 1557435 . - . gene_id "RvY_10370"; transcript_id "RvY_10370.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1557130 1557435 . - . gene_id "RvY_10370"; transcript_id "RvY_10370.1"; Scaffold005 rebuild transcript 1557437 1557826 . - . gene_id "RvY_10371"; transcript_id "RvY_10371.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1557437 1557826 . - . gene_id "RvY_10371"; transcript_id "RvY_10371.1"; Scaffold005 rebuild transcript 1559627 1569755 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1559627 1559699 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1559926 1560445 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1561200 1561476 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1561752 1562469 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1563980 1564089 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1566132 1566334 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1567822 1568223 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1569238 1569388 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild exon 1569534 1569755 . - . gene_id "RvY_10372"; transcript_id "RvY_10372.1"; Scaffold005 rebuild transcript 1571883 1573246 . - . gene_id "RvY_10373"; transcript_id "RvY_10373.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1571883 1572282 . - . gene_id "RvY_10373"; transcript_id "RvY_10373.1"; Scaffold005 rebuild exon 1572383 1573062 . - . gene_id "RvY_10373"; transcript_id "RvY_10373.1"; Scaffold005 rebuild exon 1573244 1573246 . - . gene_id "RvY_10373"; transcript_id "RvY_10373.1"; Scaffold005 rebuild transcript 1574782 1577627 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold005 rebuild exon 1574782 1574982 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; Scaffold005 rebuild exon 1575032 1575121 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; Scaffold005 rebuild exon 1575805 1576368 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; Scaffold005 rebuild exon 1576467 1576670 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; Scaffold005 rebuild exon 1576742 1577250 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; Scaffold005 rebuild exon 1577417 1577627 . - . gene_id "RvY_10374"; transcript_id "RvY_10374.1"; Scaffold005 rebuild transcript 1579084 1580482 . + . gene_id "RvY_10375"; transcript_id "RvY_10375.1"; gene_name "FRQ1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; Scaffold005 rebuild exon 1579084 1579258 . + . gene_id "RvY_10375"; transcript_id "RvY_10375.1"; Scaffold005 rebuild exon 1579342 1579489 . + . gene_id "RvY_10375"; transcript_id "RvY_10375.1"; Scaffold005 rebuild exon 1579553 1579706 . + . gene_id "RvY_10375"; transcript_id "RvY_10375.1"; Scaffold005 rebuild exon 1579782 1579995 . + . gene_id "RvY_10375"; transcript_id "RvY_10375.1"; Scaffold005 rebuild exon 1580175 1580482 . + . gene_id "RvY_10375"; transcript_id "RvY_10375.1"; Scaffold005 rebuild transcript 1580866 1582464 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; gene_name "PEX3"; annotation "peroxin-3"; Pfam "[Peroxin-3]"; KO "K13336"; Scaffold005 rebuild exon 1580866 1580949 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild exon 1581019 1581217 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild exon 1581286 1581356 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild exon 1581412 1581617 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild exon 1581705 1581931 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild exon 1581997 1582318 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild exon 1582392 1582464 . - . gene_id "RvY_10376"; transcript_id "RvY_10376.1"; Scaffold005 rebuild transcript 1583039 1584619 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; gene_name "Obg_CgtA"; annotation "GTP-binding protein 10"; Pfam "[FeoB_N] Ferrous iron transport protein B|[GTP1_OBG] GTP1/OBG|[MMR_HSR1] 50S ribosome-binding GTPase|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal."; similar_genes "GTPBA_BOVIN(e-value:8.3e-53;bit-score:204.0)"; Scaffold005 rebuild exon 1583039 1583259 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild exon 1583338 1583461 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild exon 1583529 1583714 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild exon 1583775 1583827 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild exon 1583900 1584210 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild exon 1584293 1584501 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild exon 1584578 1584619 . - . gene_id "RvY_10377"; transcript_id "RvY_10377.1"; Scaffold005 rebuild transcript 1585737 1586255 . + . gene_id "RvY_10378"; transcript_id "RvY_10378.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1585737 1586255 . + . gene_id "RvY_10378"; transcript_id "RvY_10378.1"; Scaffold005 rebuild transcript 1585604 1585984 . + . gene_id "RvY_10378"; transcript_id "RvY_10378.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1585604 1585984 . + . gene_id "RvY_10378"; transcript_id "RvY_10378.2"; Scaffold005 rebuild transcript 1586778 1587563 . - . gene_id "RvY_10379"; transcript_id "RvY_10379.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold005 rebuild exon 1586778 1587563 . - . gene_id "RvY_10379"; transcript_id "RvY_10379.1"; Scaffold005 rebuild transcript 1588392 1589297 . - . gene_id "RvY_10380"; transcript_id "RvY_10380.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold005 rebuild exon 1588392 1589297 . - . gene_id "RvY_10380"; transcript_id "RvY_10380.1"; Scaffold005 rebuild transcript 1590131 1590514 . + . gene_id "RvY_10381"; transcript_id "RvY_10381.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1590131 1590514 . + . gene_id "RvY_10381"; transcript_id "RvY_10381.1"; Scaffold005 rebuild transcript 1591893 1592344 . + . gene_id "RvY_10382"; transcript_id "RvY_10382.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1591893 1592046 . + . gene_id "RvY_10382"; transcript_id "RvY_10382.1"; Scaffold005 rebuild exon 1592127 1592344 . + . gene_id "RvY_10382"; transcript_id "RvY_10382.1"; Scaffold005 rebuild transcript 1592415 1592690 . + . gene_id "RvY_10383"; transcript_id "RvY_10383.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1592415 1592690 . + . gene_id "RvY_10383"; transcript_id "RvY_10383.1"; Scaffold005 rebuild transcript 1593850 1594257 . + . gene_id "RvY_10384"; transcript_id "RvY_10384.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1593850 1594257 . + . gene_id "RvY_10384"; transcript_id "RvY_10384.1"; Scaffold005 rebuild transcript 1594276 1594864 . + . gene_id "RvY_10385"; transcript_id "RvY_10385.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1594276 1594375 . + . gene_id "RvY_10385"; transcript_id "RvY_10385.1"; Scaffold005 rebuild exon 1594560 1594864 . + . gene_id "RvY_10385"; transcript_id "RvY_10385.1"; Scaffold005 rebuild transcript 1595016 1595351 . - . gene_id "RvY_10386"; transcript_id "RvY_10386.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1595016 1595351 . - . gene_id "RvY_10386"; transcript_id "RvY_10386.1"; Scaffold005 rebuild transcript 1596828 1597148 . + . gene_id "RvY_10387"; transcript_id "RvY_10387.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1596828 1597148 . + . gene_id "RvY_10387"; transcript_id "RvY_10387.1"; Scaffold005 rebuild transcript 1599925 1600368 . - . gene_id "RvY_10388"; transcript_id "RvY_10388.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1599925 1600368 . - . gene_id "RvY_10388"; transcript_id "RvY_10388.1"; Scaffold005 rebuild transcript 1601948 1603809 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; gene_name "DHRS1"; annotation "dehydrogenase/reductase SDR family member 1 [EC:1.1.-.-]"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.1.-.-"; KO "K11163"; similar_genes "DHRS1_HUMAN(e-value:1.8e-14;bit-score:77.0)"; Scaffold005 rebuild exon 1601948 1602053 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1602371 1602435 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1602599 1602716 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1602788 1602893 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1602963 1603095 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1603189 1603453 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1603533 1603613 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild exon 1603676 1603809 . + . gene_id "RvY_10389"; transcript_id "RvY_10389.1"; Scaffold005 rebuild transcript 1604073 1606565 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; gene_name "RIOK1"; annotation "putative Serine/threonine-protein kinase rio1"; Pfam "[RIO1] RIO1 family|[Kdo] Lipopolysaccharide kinase (Kdo/WaaP) family"; CDD "RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and chromosome maintenance. The biological substrates for RIO1 are unknown."; EC "EC2.7.11.1"; KO "K07178"; similar_genes "RIO1_SCHPO(e-value:4.1e-50;bit-score:196.0)"; Scaffold005 rebuild exon 1604073 1604177 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild exon 1604279 1604389 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild exon 1604476 1604882 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild exon 1605068 1605303 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild exon 1605372 1605514 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild exon 1605976 1606190 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild exon 1606250 1606565 . - . gene_id "RvY_10390"; transcript_id "RvY_10390.1"; Scaffold005 rebuild transcript 1608705 1609082 . + . gene_id "RvY_10391"; transcript_id "RvY_10391.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1608705 1609082 . + . gene_id "RvY_10391"; transcript_id "RvY_10391.1"; Scaffold005 rebuild transcript 1609414 1610049 . + . gene_id "RvY_10392"; transcript_id "RvY_10392.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold005 rebuild exon 1609414 1610049 . + . gene_id "RvY_10392"; transcript_id "RvY_10392.1"; Scaffold005 rebuild transcript 1612848 1614109 . - . gene_id "RvY_10393"; transcript_id "RvY_10393.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold005 rebuild exon 1612848 1613161 . - . gene_id "RvY_10393"; transcript_id "RvY_10393.1"; Scaffold005 rebuild exon 1613239 1613683 . - . gene_id "RvY_10393"; transcript_id "RvY_10393.1"; Scaffold005 rebuild exon 1613819 1614109 . - . gene_id "RvY_10393"; transcript_id "RvY_10393.1"; Scaffold005 rebuild transcript 1615472 1625250 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; gene_name "DGK"; annotation "Diacylglycerol kinase eta"; Pfam "[PH]|[DAGK_cat] Diacylglycerol kinase catalytic domain|[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[DAGK_acc] Diacylglycerol kinase accessory domain"; CDD "Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known."; EC "EC2.7.1.107"; KO "K00901"; similar_genes "DGKH_MESAU(e-value:4.7e-85;bit-score:312.0)"; Scaffold005 rebuild exon 1615472 1615633 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1615702 1615749 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1616515 1616577 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1616675 1616755 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1616843 1616947 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1617128 1617257 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1617600 1617709 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1617817 1617945 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1618600 1618901 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1619016 1619124 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1620512 1620955 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1621160 1621342 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1621413 1621500 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1621675 1621845 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1621910 1622047 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1622120 1622252 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1622497 1622741 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1623449 1623768 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1623831 1623994 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1624113 1624227 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1624424 1624633 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1624694 1624790 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1624951 1625090 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild exon 1625158 1625250 . + . gene_id "RvY_10394"; transcript_id "RvY_10394.1"; Scaffold005 rebuild transcript 1625649 1627969 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; gene_name "K01412"; annotation "Mitochondrial-processing peptidase subunit beta"; Pfam "[Peptidase_M16_C] Peptidase M16 inactive domain|[Peptidase_M16] Insulinase (Peptidase family M16)"; CDD "Predicted Zn-dependent peptidases [General function prediction only]"; EC "EC3.4.24.64"; KO "K01412"; similar_genes "MPPB_BOVIN(e-value:3.8e-91;bit-score:332.0)"; Scaffold005 rebuild exon 1625649 1625713 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1625785 1625860 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1626085 1626459 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1626650 1626754 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1626827 1627019 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1627126 1627423 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1627487 1627604 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1627684 1627818 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild exon 1627907 1627969 . - . gene_id "RvY_10395"; transcript_id "RvY_10395.1"; Scaffold005 rebuild transcript 1628926 1629471 . + . gene_id "RvY_10396"; transcript_id "RvY_10396.1"; gene_name "SENP8"; annotation "sentrin-specific protease 8 [EC:3.4.22.-]"; Pfam "[Peptidase_C48] Ulp1 protease family, C-terminal catalytic domain"; EC "EC3.4.22.-"; KO "K08597"; Scaffold005 rebuild exon 1628926 1628975 . + . gene_id "RvY_10396"; transcript_id "RvY_10396.1"; Scaffold005 rebuild exon 1629045 1629211 . + . gene_id "RvY_10396"; transcript_id "RvY_10396.1"; Scaffold005 rebuild exon 1629311 1629471 . + . gene_id "RvY_10396"; transcript_id "RvY_10396.1"; Scaffold005 rebuild transcript 1629696 1632488 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; gene_name "NPEPL1"; annotation "putative Probable aminopeptidase NPEPL1"; Pfam "[Peptidase_M17] Cytosol aminopeptidase family, catalytic domain"; CDD "Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically Scaffold005 rebuild exon 1629696 1629887 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild exon 1630114 1630314 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild exon 1630375 1630530 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild exon 1630727 1631200 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild exon 1631475 1631825 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild exon 1632030 1632202 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild exon 1632302 1632488 . - . gene_id "RvY_10397"; transcript_id "RvY_10397.1"; Scaffold005 rebuild transcript 1633309 1635666 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1633309 1633508 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild exon 1633574 1633703 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild exon 1633905 1634243 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild exon 1634298 1634563 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild exon 1634934 1635089 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild exon 1635158 1635301 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild exon 1635372 1635666 . - . gene_id "RvY_10398"; transcript_id "RvY_10398.1"; Scaffold005 rebuild transcript 1636373 1638759 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; annotation "putative Iron/zinc purple acid phosphatase-like protein"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[PhoD] PhoD-like phosphatase|[Metallophos_C] Iron/zinc purple acid phosphatase-like protein C"; EC "EC3.1.3.2"; similar_genes "PAPL_DANRE(e-value:1.9e-35;bit-score:147.0)"; Scaffold005 rebuild exon 1636373 1636585 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1636655 1636792 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1636877 1637077 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1637197 1637301 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1637376 1637490 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1637593 1637655 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1637739 1637836 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1637905 1637930 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1638005 1638187 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1638285 1638485 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild exon 1638633 1638759 . - . gene_id "RvY_10399"; transcript_id "RvY_10399.1"; Scaffold005 rebuild transcript 1638976 1639276 . + . gene_id "RvY_10400"; transcript_id "RvY_10400.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1638976 1639014 . + . gene_id "RvY_10400"; transcript_id "RvY_10400.1"; Scaffold005 rebuild exon 1639097 1639276 . + . gene_id "RvY_10400"; transcript_id "RvY_10400.1"; Scaffold005 rebuild transcript 1639469 1639798 . - . gene_id "RvY_10401"; transcript_id "RvY_10401.1"; annotation "hypothetical protein."; Pfam "[DSS1_SEM1] DSS1/SEM1 family"; Scaffold005 rebuild exon 1639469 1639798 . - . gene_id "RvY_10401"; transcript_id "RvY_10401.1"; Scaffold005 rebuild transcript 1639511 1640322 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_S6] Ribosomal protein S6"; Scaffold005 rebuild exon 1639511 1639809 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.1"; Scaffold005 rebuild exon 1640160 1640322 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.1"; Scaffold005 rebuild transcript 1640295 1640860 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.2"; annotation "hypothetical protein."; Pfam "[Ribosomal_S6] Ribosomal protein S6"; Scaffold005 rebuild exon 1640295 1640457 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.2"; Scaffold005 rebuild exon 1640520 1640668 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.2"; Scaffold005 rebuild exon 1640753 1640860 . + . gene_id "RvY_10402"; transcript_id "RvY_10402.2"; Scaffold005 rebuild transcript 1641339 1642410 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1641339 1641463 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild exon 1641535 1641609 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild exon 1641683 1641796 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild exon 1641875 1642007 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild exon 1642087 1642132 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild exon 1642221 1642279 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild exon 1642348 1642410 . - . gene_id "RvY_10403"; transcript_id "RvY_10403.1"; Scaffold005 rebuild transcript 1643229 1643925 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.1"; gene_name "aprataxin_related"; annotation "hypothetical protein."; Pfam "[HIT]|[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin."; EC "(1)EC3.-.-.-"; similar_genes "(1)HINT3_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold005 rebuild exon 1643229 1643306 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.1"; Scaffold005 rebuild exon 1643405 1643592 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.1"; Scaffold005 rebuild exon 1643675 1643801 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.1"; Scaffold005 rebuild exon 1643872 1643925 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.1"; Scaffold005 rebuild transcript 1643229 1643626 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.2"; gene_name "aprataxin_related"; annotation "hypothetical protein."; Pfam "[HIT]|[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin."; EC "(1)EC3.-.-.-"; similar_genes "(1)HINT3_MOUSE(e-value:7.0e-14;bit-score:75.0)"; Scaffold005 rebuild exon 1643229 1643306 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.2"; Scaffold005 rebuild exon 1643405 1643626 . + . gene_id "RvY_10404"; transcript_id "RvY_10404.2"; Scaffold005 rebuild transcript 1647066 1648380 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold005 rebuild exon 1647066 1647228 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.1"; Scaffold005 rebuild exon 1647349 1647481 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.1"; Scaffold005 rebuild exon 1647537 1647632 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.1"; Scaffold005 rebuild exon 1647713 1647932 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.1"; Scaffold005 rebuild exon 1648006 1648380 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.1"; Scaffold005 rebuild transcript 1647550 1648380 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.2"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold005 rebuild exon 1647550 1647632 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.2"; Scaffold005 rebuild exon 1647713 1647932 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.2"; Scaffold005 rebuild exon 1648009 1648380 . + . gene_id "RvY_10405"; transcript_id "RvY_10405.2"; Scaffold005 rebuild transcript 1648384 1651867 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1648384 1648453 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; Scaffold005 rebuild exon 1650837 1650887 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; Scaffold005 rebuild exon 1650952 1651200 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; Scaffold005 rebuild exon 1651356 1651482 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; Scaffold005 rebuild exon 1651615 1651686 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; Scaffold005 rebuild exon 1651768 1651867 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.1"; Scaffold005 rebuild transcript 1648384 1651486 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1648384 1648453 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.2"; Scaffold005 rebuild exon 1650837 1650887 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.2"; Scaffold005 rebuild exon 1650952 1651200 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.2"; Scaffold005 rebuild exon 1651356 1651486 . + . gene_id "RvY_10406"; transcript_id "RvY_10406.2"; Scaffold005 rebuild transcript 1652850 1653539 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.1"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold005 rebuild exon 1652850 1653100 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.1"; Scaffold005 rebuild exon 1653200 1653539 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.1"; Scaffold005 rebuild transcript 1652491 1652865 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.2"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold005 rebuild exon 1652491 1652865 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.2"; Scaffold005 rebuild transcript 1653494 1653820 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.3"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold005 rebuild exon 1653494 1653820 . - . gene_id "RvY_10407"; transcript_id "RvY_10407.3"; Scaffold005 rebuild transcript 1654690 1654902 . + . gene_id "RvY_10408"; transcript_id "RvY_10408.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1654690 1654902 . + . gene_id "RvY_10408"; transcript_id "RvY_10408.1"; Scaffold005 rebuild transcript 1655186 1656032 . + . gene_id "RvY_10409"; transcript_id "RvY_10409.1"; gene_name "COG1112"; annotation "hypothetical protein."; Pfam "[AAA_12] AAA domain"; CDD "Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]"; Scaffold005 rebuild exon 1655186 1655373 . + . gene_id "RvY_10409"; transcript_id "RvY_10409.1"; Scaffold005 rebuild exon 1655567 1656032 . + . gene_id "RvY_10409"; transcript_id "RvY_10409.1"; Scaffold005 rebuild transcript 1656494 1658422 . - . gene_id "RvY_10410"; transcript_id "RvY_10410.1"; gene_name "APPBP1"; annotation "amyloid beta precursor protein binding protein 1"; Pfam "[ThiF] ThiF family"; CDD "Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain."; KO "K04532"; similar_genes "ULA1_DANRE(e-value:5.0e-21;bit-score:99.0)"; Scaffold005 rebuild exon 1656494 1657291 . - . gene_id "RvY_10410"; transcript_id "RvY_10410.1"; Scaffold005 rebuild exon 1657353 1657728 . - . gene_id "RvY_10410"; transcript_id "RvY_10410.1"; Scaffold005 rebuild exon 1657896 1658422 . - . gene_id "RvY_10410"; transcript_id "RvY_10410.1"; Scaffold005 rebuild transcript 1658465 1658998 . - . gene_id "RvY_10411"; transcript_id "RvY_10411.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1658465 1658469 . - . gene_id "RvY_10411"; transcript_id "RvY_10411.1"; Scaffold005 rebuild exon 1658662 1658998 . - . gene_id "RvY_10411"; transcript_id "RvY_10411.1"; Scaffold005 rebuild transcript 1658786 1659855 . + . gene_id "RvY_10412"; transcript_id "RvY_10412.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1658786 1658896 . + . gene_id "RvY_10412"; transcript_id "RvY_10412.1"; Scaffold005 rebuild exon 1659004 1659088 . + . gene_id "RvY_10412"; transcript_id "RvY_10412.1"; Scaffold005 rebuild exon 1659249 1659332 . + . gene_id "RvY_10412"; transcript_id "RvY_10412.1"; Scaffold005 rebuild exon 1659532 1659734 . + . gene_id "RvY_10412"; transcript_id "RvY_10412.1"; Scaffold005 rebuild exon 1659802 1659855 . + . gene_id "RvY_10412"; transcript_id "RvY_10412.1"; Scaffold005 rebuild transcript 1660325 1660964 . - . gene_id "RvY_10413"; transcript_id "RvY_10413.1"; gene_name "TFIID11"; annotation "putative Transcription initiation factor TFIID subunit 13"; Pfam "[TFIID-18kDa] Transcription initiation factor IID, 18kD subunit"; CDD "Transcription initiation factor IID, 18kD subunit. This family includes the Spt3 yeast transcription factors and the 18kD subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold."; KO "K03127"; similar_genes "TAF13_MOUSE(e-value:6.3e-34;bit-score:142.0)"; Scaffold005 rebuild exon 1660325 1660521 . - . gene_id "RvY_10413"; transcript_id "RvY_10413.1"; Scaffold005 rebuild exon 1660621 1660694 . - . gene_id "RvY_10413"; transcript_id "RvY_10413.1"; Scaffold005 rebuild exon 1660795 1660964 . - . gene_id "RvY_10413"; transcript_id "RvY_10413.1"; Scaffold005 rebuild transcript 1661655 1665690 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; gene_name "XPC"; annotation "xeroderma pigmentosum group C-complementing protein"; Pfam "[BHD_2] Rad4 beta-hairpin domain 2|[BHD_1] Rad4 beta-hairpin domain 1|[BHD_3] Rad4 beta-hairpin domain 3|[Rad4] Rad4 transglutaminase-like domain"; CDD "DNA repair protein rad4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10838"; Scaffold005 rebuild exon 1661655 1662344 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild exon 1662410 1662964 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild exon 1663245 1663868 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild exon 1664034 1664384 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild exon 1664574 1665065 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild exon 1665189 1665437 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild exon 1665499 1665690 . + . gene_id "RvY_10414"; transcript_id "RvY_10414.1"; Scaffold005 rebuild transcript 1666090 1668014 . - . gene_id "RvY_10415"; transcript_id "RvY_10415.1"; gene_name "SUA7"; annotation "hypothetical protein."; Pfam "[TFIIB] Transcription factor TFIIB repeat"; CDD "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]"; KO "K15196"; Scaffold005 rebuild exon 1666090 1666559 . - . gene_id "RvY_10415"; transcript_id "RvY_10415.1"; Scaffold005 rebuild exon 1666863 1666947 . - . gene_id "RvY_10415"; transcript_id "RvY_10415.1"; Scaffold005 rebuild exon 1667042 1667362 . - . gene_id "RvY_10415"; transcript_id "RvY_10415.1"; Scaffold005 rebuild exon 1667583 1667776 . - . gene_id "RvY_10415"; transcript_id "RvY_10415.1"; Scaffold005 rebuild exon 1667849 1668014 . - . gene_id "RvY_10415"; transcript_id "RvY_10415.1"; Scaffold005 rebuild transcript 1669150 1670405 . - . gene_id "RvY_10416"; transcript_id "RvY_10416.1"; gene_name "H2A"; annotation "putative Probable histone H2A.4"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone 2A."; similar_genes "H2A4_ORYSI(e-value:6.4e-36;bit-score:148.0)"; Scaffold005 rebuild exon 1669150 1669872 . - . gene_id "RvY_10416"; transcript_id "RvY_10416.1"; Scaffold005 rebuild exon 1670034 1670210 . - . gene_id "RvY_10416"; transcript_id "RvY_10416.1"; Scaffold005 rebuild exon 1670280 1670405 . - . gene_id "RvY_10416"; transcript_id "RvY_10416.1"; Scaffold005 rebuild transcript 1670865 1671933 . - . gene_id "RvY_10417"; transcript_id "RvY_10417.1"; gene_name "GCD14"; annotation "tRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]"; Pfam "[GCD14] tRNA methyltransferase complex GCD14 subunit"; CDD "tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA."; EC "EC2.1.1.36"; KO "K07442"; similar_genes "TRM61_HUMAN(e-value:8.5e-21;bit-score:98.0)"; Scaffold005 rebuild exon 1670865 1671263 . - . gene_id "RvY_10417"; transcript_id "RvY_10417.1"; Scaffold005 rebuild exon 1671427 1671933 . - . gene_id "RvY_10417"; transcript_id "RvY_10417.1"; Scaffold005 rebuild transcript 1672683 1677869 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; Scaffold005 rebuild exon 1672683 1672830 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1673023 1674095 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1674433 1674497 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1674564 1674638 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1674971 1675154 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1675468 1675797 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1676106 1676406 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild exon 1677355 1677869 . + . gene_id "RvY_10418"; transcript_id "RvY_10418.1"; Scaffold005 rebuild transcript 1678055 1678471 . + . gene_id "RvY_10419"; transcript_id "RvY_10419.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1678055 1678471 . + . gene_id "RvY_10419"; transcript_id "RvY_10419.1"; Scaffold005 rebuild transcript 1679223 1689962 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; gene_name "EGF_Lam"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[PSI] Plexin repeat|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; CDD "Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies"; similar_genes "MEGF8_MOUSE(e-value:1.6e-11;bit-score:67.0)"; Scaffold005 rebuild exon 1679223 1680176 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1680381 1680549 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1680617 1681013 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1681317 1682197 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1682447 1682847 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1683048 1683186 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1683251 1683524 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1683584 1684031 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1684216 1685032 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1685242 1685380 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1685444 1685804 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1686041 1686760 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1687101 1687442 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1687707 1688777 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild exon 1688973 1689962 . - . gene_id "RvY_10420"; transcript_id "RvY_10420.1"; Scaffold005 rebuild transcript 1690727 1692148 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; gene_name "DNAJC8"; annotation "putative DnaJ homolog subfamily C member 8"; Pfam "[DnaJ]"; CDD "DnaJ molecular chaperone homology domain."; KO "K09528"; similar_genes "DNJC8_HUMAN(e-value:1.6e-28;bit-score:124.0)"; Scaffold005 rebuild exon 1690727 1690807 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1690915 1691140 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1691263 1691357 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1691442 1691513 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1691575 1691619 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1691715 1691761 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1691857 1691932 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild exon 1691999 1692148 . + . gene_id "RvY_10421"; transcript_id "RvY_10421.1"; Scaffold005 rebuild transcript 1693677 1694423 . - . gene_id "RvY_10422"; transcript_id "RvY_10422.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1693677 1694423 . - . gene_id "RvY_10422"; transcript_id "RvY_10422.1"; Scaffold005 rebuild transcript 1693453 1694423 . - . gene_id "RvY_10422"; transcript_id "RvY_10422.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1693453 1693462 . - . gene_id "RvY_10422"; transcript_id "RvY_10422.2"; Scaffold005 rebuild exon 1693699 1694423 . - . gene_id "RvY_10422"; transcript_id "RvY_10422.2"; Scaffold005 rebuild transcript 1694163 1694411 . + . gene_id "RvY_10423"; transcript_id "RvY_10423.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1694163 1694411 . + . gene_id "RvY_10423"; transcript_id "RvY_10423.1"; Scaffold005 rebuild transcript 1694579 1695109 . - . gene_id "RvY_10424"; transcript_id "RvY_10424.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1694579 1694720 . - . gene_id "RvY_10424"; transcript_id "RvY_10424.1"; Scaffold005 rebuild exon 1694805 1694950 . - . gene_id "RvY_10424"; transcript_id "RvY_10424.1"; Scaffold005 rebuild exon 1695077 1695109 . - . gene_id "RvY_10424"; transcript_id "RvY_10424.1"; Scaffold005 rebuild transcript 1697944 1698583 . + . gene_id "RvY_10425"; transcript_id "RvY_10425.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1697944 1698107 . + . gene_id "RvY_10425"; transcript_id "RvY_10425.1"; Scaffold005 rebuild exon 1698286 1698583 . + . gene_id "RvY_10425"; transcript_id "RvY_10425.1"; Scaffold005 rebuild transcript 1698434 1699712 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold005 rebuild exon 1698434 1698569 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.1"; Scaffold005 rebuild exon 1698698 1698894 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.1"; Scaffold005 rebuild exon 1698989 1699148 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.1"; Scaffold005 rebuild exon 1699354 1699473 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.1"; Scaffold005 rebuild exon 1699555 1699712 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.1"; Scaffold005 rebuild transcript 1698334 1699712 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.2"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold005 rebuild exon 1698334 1698370 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.2"; Scaffold005 rebuild exon 1698698 1698894 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.2"; Scaffold005 rebuild exon 1698989 1699148 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.2"; Scaffold005 rebuild exon 1699354 1699473 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.2"; Scaffold005 rebuild exon 1699555 1699712 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.2"; Scaffold005 rebuild transcript 1698694 1699712 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.3"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold005 rebuild exon 1698694 1698894 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.3"; Scaffold005 rebuild exon 1698989 1699148 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.3"; Scaffold005 rebuild exon 1699354 1699473 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.3"; Scaffold005 rebuild exon 1699555 1699712 . - . gene_id "RvY_10426"; transcript_id "RvY_10426.3"; Scaffold005 rebuild transcript 1700530 1702716 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1700530 1702517 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.1"; Scaffold005 rebuild exon 1702686 1702716 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.1"; Scaffold005 rebuild transcript 1699798 1702551 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1699798 1699910 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.2"; Scaffold005 rebuild exon 1700628 1700824 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.2"; Scaffold005 rebuild exon 1700996 1702551 . - . gene_id "RvY_10427"; transcript_id "RvY_10427.2"; Scaffold005 rebuild transcript 1704448 1707875 . + . gene_id "RvY_10428"; transcript_id "RvY_10428.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1704448 1704561 . + . gene_id "RvY_10428"; transcript_id "RvY_10428.1"; Scaffold005 rebuild exon 1705868 1706034 . + . gene_id "RvY_10428"; transcript_id "RvY_10428.1"; Scaffold005 rebuild exon 1706262 1706420 . + . gene_id "RvY_10428"; transcript_id "RvY_10428.1"; Scaffold005 rebuild exon 1706498 1706574 . + . gene_id "RvY_10428"; transcript_id "RvY_10428.1"; Scaffold005 rebuild exon 1707721 1707875 . + . gene_id "RvY_10428"; transcript_id "RvY_10428.1"; Scaffold005 rebuild transcript 1708925 1710840 . + . gene_id "RvY_10429"; transcript_id "RvY_10429.1"; gene_name "UDPGT"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "UDP-glucoronosyl and UDP-glucosyl transferase."; EC "EC2.4.1.234"; similar_genes "KGLT_PETHY(e-value:3.1e-12;bit-score:70.0)"; Scaffold005 rebuild exon 1708925 1709285 . + . gene_id "RvY_10429"; transcript_id "RvY_10429.1"; Scaffold005 rebuild exon 1709526 1709891 . + . gene_id "RvY_10429"; transcript_id "RvY_10429.1"; Scaffold005 rebuild exon 1710089 1710504 . + . gene_id "RvY_10429"; transcript_id "RvY_10429.1"; Scaffold005 rebuild exon 1710565 1710840 . + . gene_id "RvY_10429"; transcript_id "RvY_10429.1"; Scaffold005 rebuild transcript 1711071 1715302 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat"; Scaffold005 rebuild exon 1711071 1711526 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; Scaffold005 rebuild exon 1712454 1712931 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; Scaffold005 rebuild exon 1713258 1713860 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; Scaffold005 rebuild exon 1714163 1714629 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; Scaffold005 rebuild exon 1714691 1715104 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; Scaffold005 rebuild exon 1715162 1715302 . - . gene_id "RvY_10430"; transcript_id "RvY_10430.1"; Scaffold005 rebuild transcript 1716004 1716828 . + . gene_id "RvY_10431"; transcript_id "RvY_10431.1"; annotation "hypothetical protein."; Pfam "[PLDc_2] PLD-like domain"; Scaffold005 rebuild exon 1716004 1716828 . + . gene_id "RvY_10431"; transcript_id "RvY_10431.1"; Scaffold005 rebuild transcript 1718068 1731958 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; gene_name "(2)TFCP2"; annotation "Protein grainyhead"; Pfam "[CP2] CP2 transcription factor"; KO "(2)K09275"; similar_genes "ELF1_DROME(e-value:6.5e-74;bit-score:275.0)"; Scaffold005 rebuild exon 1718068 1718183 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1727206 1727514 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1728588 1729293 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1729355 1729557 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1729979 1730070 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1730277 1730347 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1730497 1730760 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1730840 1730941 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1731030 1731369 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1731439 1731524 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1731625 1731689 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild exon 1731784 1731958 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.1"; Scaffold005 rebuild transcript 1725247 1731958 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; gene_name "(2)TFCP2"; annotation "Protein grainyhead"; Pfam "[CP2] CP2 transcription factor"; KO "(2)K09275"; similar_genes "ELF1_DROME(e-value:6.5e-74;bit-score:275.0)"; Scaffold005 rebuild exon 1725247 1725296 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1727206 1727514 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1728588 1729293 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1729355 1729557 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1729979 1730070 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1730277 1730347 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1730497 1730760 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1730840 1730941 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1731030 1731369 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1731439 1731524 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1731625 1731689 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild exon 1731784 1731958 . + . gene_id "RvY_10432"; transcript_id "RvY_10432.2"; Scaffold005 rebuild transcript 1720548 1721120 . - . gene_id "RvY_10433"; transcript_id "RvY_10433.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1720548 1720743 . - . gene_id "RvY_10433"; transcript_id "RvY_10433.1"; Scaffold005 rebuild exon 1721002 1721120 . - . gene_id "RvY_10433"; transcript_id "RvY_10433.1"; Scaffold005 rebuild transcript 1732752 1733888 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; gene_name "ndk"; annotation "nucleoside-diphosphate kinase [EC:2.7.4.6]"; Pfam "[NDK] Nucleoside diphosphate kinase"; CDD "These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity."; EC "EC2.7.4.6"; KO "K00940"; similar_genes "NDK6_DANRE(e-value:6.2e-15;bit-score:79.0)"; Scaffold005 rebuild exon 1732752 1732987 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; Scaffold005 rebuild exon 1733053 1733129 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; Scaffold005 rebuild exon 1733209 1733292 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; Scaffold005 rebuild exon 1733398 1733437 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; Scaffold005 rebuild exon 1733504 1733606 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; Scaffold005 rebuild exon 1733691 1733888 . - . gene_id "RvY_10434"; transcript_id "RvY_10434.1"; Scaffold005 rebuild transcript 1734368 1735946 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; gene_name "LYPLA2"; annotation "lysophospholipase II [EC:3.1.1.5]"; Pfam "[FSH1] Serine hydrolase (FSH1)|[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_2] Phospholipase/Carboxylesterase"; EC "EC3.1.1.5|EC3.1.2.-"; KO "K06130"; similar_genes "LYPA2_HUMAN(e-value:2.7e-13;bit-score:73.0)"; Scaffold005 rebuild exon 1734368 1734571 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1734628 1734659 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1734768 1734833 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1735012 1735133 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1735207 1735281 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1735389 1735489 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1735611 1735775 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild exon 1735902 1735946 . + . gene_id "RvY_10435"; transcript_id "RvY_10435.1"; Scaffold005 rebuild transcript 1736515 1736865 . - . gene_id "RvY_10436"; transcript_id "RvY_10436.1"; gene_name "ATPeVG"; annotation "putative Probable V-type proton ATPase subunit G"; Pfam "[V-ATPase_G] Vacuolar (H+)-ATPase G subunit"; EC "EC3.6.3.14"; KO "K02152"; similar_genes "VATG_CAEBR(e-value:7.0e-31;bit-score:132.0)"; Scaffold005 rebuild exon 1736515 1736865 . - . gene_id "RvY_10436"; transcript_id "RvY_10436.1"; Scaffold005 rebuild transcript 1737471 1737623 . + . gene_id "RvY_10437"; transcript_id "RvY_10437.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1737471 1737623 . + . gene_id "RvY_10437"; transcript_id "RvY_10437.1"; Scaffold005 rebuild transcript 1738349 1741957 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; gene_name "K01164"; annotation "ribonuclease P [EC:3.1.26.5]"; Pfam "[POP1] Ribonucleases P/MRP protein subunit POP1|[POPLD] POPLD (NUC188) domain"; EC "EC3.1.26.5"; KO "K01164"; similar_genes "YPD9_CAEEL(e-value:4.0e-10;bit-score:63.0)"; Scaffold005 rebuild exon 1738349 1739124 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1739307 1739474 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1739573 1739668 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1739909 1740067 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1740257 1740994 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1741077 1741398 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1741533 1741717 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild exon 1741801 1741957 . - . gene_id "RvY_10438"; transcript_id "RvY_10438.1"; Scaffold005 rebuild transcript 1742538 1746269 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; gene_name "WD40"; annotation "Transducin-like enhancer protein 4"; Pfam "[WD40] WD domain, G-beta repeat|[TLE_N] Groucho/TLE N-terminal Q-rich domain"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "TLE4_XENLA(e-value:1.1e-58;bit-score:224.0)"; Scaffold005 rebuild exon 1742538 1742996 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild exon 1743247 1743967 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild exon 1744153 1744476 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild exon 1744826 1745208 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild exon 1745277 1745461 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild exon 1745537 1745655 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild exon 1745953 1746269 . + . gene_id "RvY_10439"; transcript_id "RvY_10439.1"; Scaffold005 rebuild transcript 1746766 1747404 . - . gene_id "RvY_10440"; transcript_id "RvY_10440.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1746766 1747404 . - . gene_id "RvY_10440"; transcript_id "RvY_10440.1"; Scaffold005 rebuild transcript 1748534 1750189 . - . gene_id "RvY_10441"; transcript_id "RvY_10441.1"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_16] Glycosyl hydrolases family 16"; Scaffold005 rebuild exon 1748534 1748738 . - . gene_id "RvY_10441"; transcript_id "RvY_10441.1"; Scaffold005 rebuild exon 1749150 1750189 . - . gene_id "RvY_10441"; transcript_id "RvY_10441.1"; Scaffold005 rebuild transcript 1750245 1750703 . - . gene_id "RvY_10442"; transcript_id "RvY_10442.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1750245 1750703 . - . gene_id "RvY_10442"; transcript_id "RvY_10442.1"; Scaffold005 rebuild transcript 1751380 1753467 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; gene_name "CPVL"; annotation "vitellogenic carboxypeptidase-like protein [EC:3.4.16.-]"; Pfam "[Peptidase_S10] Serine carboxypeptidase"; EC "EC3.4.16.-"; KO "K09645"; similar_genes "CPVL_HUMAN(e-value:7.0e-14;bit-score:75.0)"; Scaffold005 rebuild exon 1751380 1751465 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; Scaffold005 rebuild exon 1751540 1752187 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; Scaffold005 rebuild exon 1752433 1752486 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; Scaffold005 rebuild exon 1752569 1753025 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; Scaffold005 rebuild exon 1753091 1753251 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; Scaffold005 rebuild exon 1753380 1753467 . - . gene_id "RvY_10443"; transcript_id "RvY_10443.1"; Scaffold005 rebuild transcript 1755005 1755561 . + . gene_id "RvY_10444"; transcript_id "RvY_10444.1"; annotation "hypothetical protein."; Pfam "[zf-DNL] DNL zinc finger"; similar_genes "DNLZ_XENLA(e-value:7.9e-11;bit-score:65.0)"; Scaffold005 rebuild exon 1755005 1755387 . + . gene_id "RvY_10444"; transcript_id "RvY_10444.1"; Scaffold005 rebuild exon 1755447 1755561 . + . gene_id "RvY_10444"; transcript_id "RvY_10444.1"; Scaffold005 rebuild transcript 1755588 1756816 . + . gene_id "RvY_10445"; transcript_id "RvY_10445.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold005 rebuild exon 1755588 1756194 . + . gene_id "RvY_10445"; transcript_id "RvY_10445.1"; Scaffold005 rebuild exon 1756491 1756816 . + . gene_id "RvY_10445"; transcript_id "RvY_10445.1"; Scaffold005 rebuild transcript 1756826 1757137 . - . gene_id "RvY_10446"; transcript_id "RvY_10446.1"; annotation "hypothetical protein."; similar_genes "ZMAT2_HUMAN(e-value:3.6e-13;bit-score:73.0)"; Scaffold005 rebuild exon 1756826 1757137 . - . gene_id "RvY_10446"; transcript_id "RvY_10446.1"; Scaffold005 rebuild transcript 1757288 1757614 . + . gene_id "RvY_10447"; transcript_id "RvY_10447.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1757288 1757614 . + . gene_id "RvY_10447"; transcript_id "RvY_10447.1"; Scaffold005 rebuild transcript 1758440 1760848 . + . gene_id "RvY_10448"; transcript_id "RvY_10448.1"; product "nucleolar and coiled-body phosphoprotein"; annotation "nucleolar and coiled-body phosphoprotein | hypothetical protein."; Pfam "[SRP40_C] SRP40, C-terminal domain"; similar_genes "NOLC1_HUMAN(e-value:5.1e-08;bit-score:56.0)"; Scaffold005 rebuild exon 1758440 1758863 . + . gene_id "RvY_10448"; transcript_id "RvY_10448.1"; Scaffold005 rebuild exon 1759056 1759357 . + . gene_id "RvY_10448"; transcript_id "RvY_10448.1"; Scaffold005 rebuild exon 1759621 1760215 . + . gene_id "RvY_10448"; transcript_id "RvY_10448.1"; Scaffold005 rebuild exon 1760487 1760848 . + . gene_id "RvY_10448"; transcript_id "RvY_10448.1"; Scaffold005 rebuild transcript 1761022 1761706 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.1"; product "replication protein A 14 kDa subunit"; gene_name "RPA3"; annotation "replication protein A 14 kDa subunit | (1)hypothetical protein.(2)replication factor A3"; Pfam "[Rep_fac-A_3] Replication factor A protein 3"; CDD "RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer."; KO "(2)K10740"; Scaffold005 rebuild exon 1761022 1761378 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.1"; Scaffold005 rebuild exon 1761452 1761526 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.1"; Scaffold005 rebuild exon 1761590 1761706 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.1"; Scaffold005 rebuild transcript 1761129 1761706 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.2"; product "replication protein A 14 kDa subunit"; gene_name "RPA3"; annotation "replication protein A 14 kDa subunit | (1)hypothetical protein.(2)replication factor A3"; Pfam "[Rep_fac-A_3] Replication factor A protein 3"; CDD "RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer."; KO "(2)K10740"; Scaffold005 rebuild exon 1761129 1761199 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.2"; Scaffold005 rebuild exon 1761267 1761378 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.2"; Scaffold005 rebuild exon 1761452 1761526 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.2"; Scaffold005 rebuild exon 1761590 1761706 . - . gene_id "RvY_10449"; transcript_id "RvY_10449.2"; Scaffold005 rebuild transcript 1762166 1763703 . + . gene_id "RvY_10450"; transcript_id "RvY_10450.1"; gene_name "APEX1"; annotation "putative Probable endonuclease 4"; Pfam "[AP_endonuc_2] Xylose isomerase-like TIM barrel"; CDD "endonuclease IV; Provisional"; EC "EC3.1.21.2|EC4.2.99.18"; KO "K10771"; similar_genes "END4_BACTN(e-value:1.1e-33;bit-score:141.0)"; Scaffold005 rebuild exon 1762166 1762297 . + . gene_id "RvY_10450"; transcript_id "RvY_10450.1"; Scaffold005 rebuild exon 1762382 1762787 . + . gene_id "RvY_10450"; transcript_id "RvY_10450.1"; Scaffold005 rebuild exon 1763004 1763489 . + . gene_id "RvY_10450"; transcript_id "RvY_10450.1"; Scaffold005 rebuild exon 1763561 1763703 . + . gene_id "RvY_10450"; transcript_id "RvY_10450.1"; Scaffold005 rebuild transcript 1763858 1766021 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; annotation "putative Glycosyltransferase-like domain-containing protein 1"; Pfam "[Glyco_trans_1_4] Glycosyl transferases group 1|[DUF3524]|[Glycos_transf_1] Glycosyl transferases group 1"; similar_genes "GTDC1_MOUSE(e-value:1.0e-44;bit-score:178.0)"; Scaffold005 rebuild exon 1763858 1764021 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild exon 1764628 1764698 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild exon 1764790 1764934 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild exon 1764998 1765319 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild exon 1765409 1765442 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild exon 1765510 1765677 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild exon 1765747 1766021 . - . gene_id "RvY_10451"; transcript_id "RvY_10451.1"; Scaffold005 rebuild transcript 1766553 1768620 . + . gene_id "RvY_10452"; transcript_id "RvY_10452.1"; gene_name "hPOT1_OB1_like"; annotation "hypothetical protein."; Pfam "[Telo_bind] Telomeric single stranded DNA binding POT1/CDC13"; CDD "hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. A second OB fold has not been predicted in S. pombe POT1. OnTEBP binds the extreme 3-prime end of telomeric DNA. It is heterodimeric and contains four OB folds - three in the alpha subunit (two in the N-terminal domain and one in the C-terminal domain) and one in the beta subunit. OB1Nalpha, together with the second OB fold of the N-terminal domain of OnTEBP alpha subunit and the beta subunit OB fold, forms a deep cleft that binds ssDNA."; Scaffold005 rebuild exon 1766553 1767207 . + . gene_id "RvY_10452"; transcript_id "RvY_10452.1"; Scaffold005 rebuild exon 1767270 1767583 . + . gene_id "RvY_10452"; transcript_id "RvY_10452.1"; Scaffold005 rebuild exon 1767832 1768620 . + . gene_id "RvY_10452"; transcript_id "RvY_10452.1"; Scaffold005 rebuild transcript 1769140 1770776 . - . gene_id "RvY_10453"; transcript_id "RvY_10453.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1769140 1769870 . - . gene_id "RvY_10453"; transcript_id "RvY_10453.1"; Scaffold005 rebuild exon 1770055 1770123 . - . gene_id "RvY_10453"; transcript_id "RvY_10453.1"; Scaffold005 rebuild exon 1770236 1770776 . - . gene_id "RvY_10453"; transcript_id "RvY_10453.1"; Scaffold005 rebuild transcript 1771077 1771268 . - . gene_id "RvY_10454"; transcript_id "RvY_10454.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1771077 1771268 . - . gene_id "RvY_10454"; transcript_id "RvY_10454.1"; Scaffold005 rebuild transcript 1771529 1772749 . + . gene_id "RvY_10455"; transcript_id "RvY_10455.1"; annotation "hypothetical protein."; Pfam "[DUF2453]"; similar_genes "TMM65_BOVIN(e-value:1.4e-16;bit-score:84.0)"; Scaffold005 rebuild exon 1771529 1771850 . + . gene_id "RvY_10455"; transcript_id "RvY_10455.1"; Scaffold005 rebuild exon 1771943 1771981 . + . gene_id "RvY_10455"; transcript_id "RvY_10455.1"; Scaffold005 rebuild exon 1772054 1772176 . + . gene_id "RvY_10455"; transcript_id "RvY_10455.1"; Scaffold005 rebuild exon 1772257 1772405 . + . gene_id "RvY_10455"; transcript_id "RvY_10455.1"; Scaffold005 rebuild exon 1772600 1772749 . + . gene_id "RvY_10455"; transcript_id "RvY_10455.1"; Scaffold005 rebuild transcript 1773108 1774343 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1773108 1773145 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild exon 1773218 1773261 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild exon 1773338 1773443 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild exon 1773532 1773653 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild exon 1773728 1773894 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild exon 1773952 1774198 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild exon 1774264 1774343 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.1"; Scaffold005 rebuild transcript 1773334 1774343 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1773334 1773443 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.2"; Scaffold005 rebuild exon 1773532 1773653 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.2"; Scaffold005 rebuild exon 1773728 1773894 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.2"; Scaffold005 rebuild exon 1773952 1774198 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.2"; Scaffold005 rebuild exon 1774264 1774343 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.2"; Scaffold005 rebuild transcript 1773431 1774343 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1773431 1773653 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.3"; Scaffold005 rebuild exon 1773728 1773894 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.3"; Scaffold005 rebuild exon 1773952 1774198 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.3"; Scaffold005 rebuild exon 1774264 1774343 . - . gene_id "RvY_10456"; transcript_id "RvY_10456.3"; Scaffold005 rebuild transcript 1776506 1776868 . - . gene_id "RvY_10457"; transcript_id "RvY_10457.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1776506 1776868 . - . gene_id "RvY_10457"; transcript_id "RvY_10457.1"; Scaffold005 rebuild transcript 1777064 1785671 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; annotation "putative Regulator of G-protein signaling 20"; Pfam "[RGS] Regulator of G protein signaling domain"; similar_genes "RGS20_HUMAN(e-value:9.3e-50;bit-score:194.0)"; Scaffold005 rebuild exon 1777064 1777348 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; Scaffold005 rebuild exon 1779147 1779313 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; Scaffold005 rebuild exon 1779661 1779722 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; Scaffold005 rebuild exon 1780373 1780471 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; Scaffold005 rebuild exon 1782174 1782334 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; Scaffold005 rebuild exon 1785642 1785671 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.1"; Scaffold005 rebuild transcript 1777064 1780785 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.2"; annotation "putative Regulator of G-protein signaling 20"; Pfam "[RGS] Regulator of G protein signaling domain"; similar_genes "RGS20_HUMAN(e-value:9.3e-50;bit-score:194.0)"; Scaffold005 rebuild exon 1777064 1777348 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.2"; Scaffold005 rebuild exon 1779147 1779313 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.2"; Scaffold005 rebuild exon 1779661 1779722 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.2"; Scaffold005 rebuild exon 1780373 1780471 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.2"; Scaffold005 rebuild exon 1780724 1780785 . - . gene_id "RvY_10458"; transcript_id "RvY_10458.2"; Scaffold005 rebuild transcript 1788704 1791563 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; annotation "hypothetical protein."; Pfam "[DUF2363] Uncharacterized conserved protein (DUF2363)"; Scaffold005 rebuild exon 1788704 1788874 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1789115 1789285 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1789417 1789498 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1789805 1789896 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1789966 1790172 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1790242 1790380 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1790460 1790575 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1790651 1790704 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1790782 1790994 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1791070 1791201 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1791280 1791385 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild exon 1791493 1791563 . - . gene_id "RvY_10459"; transcript_id "RvY_10459.1"; Scaffold005 rebuild transcript 1792336 1793864 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; annotation "hypothetical protein."; Pfam "[Sec1] Sec1 family"; Scaffold005 rebuild exon 1792336 1792428 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; Scaffold005 rebuild exon 1792499 1792579 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; Scaffold005 rebuild exon 1792699 1793019 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; Scaffold005 rebuild exon 1793088 1793368 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; Scaffold005 rebuild exon 1793455 1793638 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; Scaffold005 rebuild exon 1793745 1793864 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.1"; Scaffold005 rebuild transcript 1793630 1794653 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.2"; annotation "hypothetical protein."; Pfam "[Sec1] Sec1 family"; Scaffold005 rebuild exon 1793630 1793670 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.2"; Scaffold005 rebuild exon 1793745 1794030 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.2"; Scaffold005 rebuild exon 1794156 1794653 . + . gene_id "RvY_10460"; transcript_id "RvY_10460.2"; Scaffold005 rebuild transcript 1794988 1796013 . - . gene_id "RvY_10461"; transcript_id "RvY_10461.1"; annotation "hypothetical protein."; Pfam "[Scm3] Centromere protein Scm3"; Scaffold005 rebuild exon 1794988 1795106 . - . gene_id "RvY_10461"; transcript_id "RvY_10461.1"; Scaffold005 rebuild exon 1795266 1796013 . - . gene_id "RvY_10461"; transcript_id "RvY_10461.1"; Scaffold005 rebuild transcript 1796652 1798412 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; gene_name "SNRPA1"; annotation "U2 small nuclear ribonucleoprotein A'"; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; KO "K11092"; similar_genes "RU2A_HUMAN(e-value:8.9e-61;bit-score:231.0)"; Scaffold005 rebuild exon 1796652 1796774 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild exon 1797228 1797334 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild exon 1797433 1797558 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild exon 1797662 1797764 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild exon 1797930 1798091 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild exon 1798177 1798285 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild exon 1798366 1798412 . + . gene_id "RvY_10462"; transcript_id "RvY_10462.1"; Scaffold005 rebuild transcript 1798821 1799605 . - . gene_id "RvY_10463"; transcript_id "RvY_10463.1"; annotation "hypothetical protein."; Pfam "[Hemerythrin] Hemerythrin HHE cation binding domain"; similar_genes "YI06_SCHPO(e-value:3.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 1798821 1799051 . - . gene_id "RvY_10463"; transcript_id "RvY_10463.1"; Scaffold005 rebuild exon 1799114 1799605 . - . gene_id "RvY_10463"; transcript_id "RvY_10463.1"; Scaffold005 rebuild transcript 1800077 1802344 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; gene_name "ILK"; annotation "Integrin-linked protein kinase"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; EC "EC2.7.11.1"; KO "K06272"; similar_genes "ILK_PONAB(e-value:1.6e-64;bit-score:243.0)"; Scaffold005 rebuild exon 1800077 1800234 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1800467 1800632 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1800702 1800797 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1800862 1800961 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1801030 1801110 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1801203 1801303 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1801396 1801627 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1801690 1801811 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1801898 1802128 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild exon 1802198 1802344 . + . gene_id "RvY_10464"; transcript_id "RvY_10464.1"; Scaffold005 rebuild transcript 1803426 1804160 . - . gene_id "RvY_10465"; transcript_id "RvY_10465.1"; annotation "hypothetical protein."; Pfam "[DUF2366] Uncharacterised conserved protein (DUF2366)"; Scaffold005 rebuild exon 1803426 1803892 . - . gene_id "RvY_10465"; transcript_id "RvY_10465.1"; Scaffold005 rebuild exon 1803971 1804160 . - . gene_id "RvY_10465"; transcript_id "RvY_10465.1"; Scaffold005 rebuild transcript 1805253 1805387 . + . gene_id "RvY_10466"; transcript_id "RvY_10466.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1805253 1805387 . + . gene_id "RvY_10466"; transcript_id "RvY_10466.1"; Scaffold005 rebuild transcript 1808476 1809996 . - . gene_id "RvY_10467"; transcript_id "RvY_10467.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1808476 1808522 . - . gene_id "RvY_10467"; transcript_id "RvY_10467.1"; Scaffold005 rebuild exon 1808594 1808692 . - . gene_id "RvY_10467"; transcript_id "RvY_10467.1"; Scaffold005 rebuild exon 1808748 1808811 . - . gene_id "RvY_10467"; transcript_id "RvY_10467.1"; Scaffold005 rebuild exon 1808884 1809135 . - . gene_id "RvY_10467"; transcript_id "RvY_10467.1"; Scaffold005 rebuild exon 1809532 1809996 . - . gene_id "RvY_10467"; transcript_id "RvY_10467.1"; Scaffold005 rebuild transcript 1810710 1814250 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; gene_name "ALDH_F16"; annotation "hypothetical protein."; Pfam "[Aldedh] Aldehyde dehydrogenase family"; CDD "Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The Scaffold005 rebuild exon 1810710 1810796 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1810874 1811100 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1811178 1811338 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1811415 1811574 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1811646 1811733 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1811799 1812161 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1812227 1812352 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1812565 1812863 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1812938 1813114 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1813200 1813398 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1813483 1813668 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild exon 1813954 1814250 . + . gene_id "RvY_10468"; transcript_id "RvY_10468.1"; Scaffold005 rebuild transcript 1814862 1815176 . + . gene_id "RvY_10469"; transcript_id "RvY_10469.1"; gene_name "TCF15"; annotation "transcription factor 15"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; KO "K09070"; similar_genes "TCF15_CHICK(e-value:4.5e-09;bit-score:59.0)"; Scaffold005 rebuild exon 1814862 1815176 . + . gene_id "RvY_10469"; transcript_id "RvY_10469.1"; Scaffold005 rebuild transcript 1816405 1817802 . + . gene_id "RvY_10470"; transcript_id "RvY_10470.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1816405 1816659 . + . gene_id "RvY_10470"; transcript_id "RvY_10470.1"; Scaffold005 rebuild exon 1816905 1817267 . + . gene_id "RvY_10470"; transcript_id "RvY_10470.1"; Scaffold005 rebuild exon 1817677 1817802 . + . gene_id "RvY_10470"; transcript_id "RvY_10470.1"; Scaffold005 rebuild transcript 1818065 1818820 . - . gene_id "RvY_10471"; transcript_id "RvY_10471.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1818065 1818311 . - . gene_id "RvY_10471"; transcript_id "RvY_10471.1"; Scaffold005 rebuild exon 1818383 1818526 . - . gene_id "RvY_10471"; transcript_id "RvY_10471.1"; Scaffold005 rebuild exon 1818591 1818820 . - . gene_id "RvY_10471"; transcript_id "RvY_10471.1"; Scaffold005 rebuild transcript 1818974 1820452 . - . gene_id "RvY_10472"; transcript_id "RvY_10472.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1818974 1819140 . - . gene_id "RvY_10472"; transcript_id "RvY_10472.1"; Scaffold005 rebuild exon 1819269 1819622 . - . gene_id "RvY_10472"; transcript_id "RvY_10472.1"; Scaffold005 rebuild exon 1819846 1820169 . - . gene_id "RvY_10472"; transcript_id "RvY_10472.1"; Scaffold005 rebuild exon 1820332 1820452 . - . gene_id "RvY_10472"; transcript_id "RvY_10472.1"; Scaffold005 rebuild transcript 1822536 1822703 . + . gene_id "RvY_10473"; transcript_id "RvY_10473.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1822536 1822703 . + . gene_id "RvY_10473"; transcript_id "RvY_10473.1"; Scaffold005 rebuild transcript 1823839 1825499 . + . gene_id "RvY_10474"; transcript_id "RvY_10474.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1823839 1824036 . + . gene_id "RvY_10474"; transcript_id "RvY_10474.1"; Scaffold005 rebuild exon 1824110 1824230 . + . gene_id "RvY_10474"; transcript_id "RvY_10474.1"; Scaffold005 rebuild exon 1825293 1825402 . + . gene_id "RvY_10474"; transcript_id "RvY_10474.1"; Scaffold005 rebuild exon 1825443 1825499 . + . gene_id "RvY_10474"; transcript_id "RvY_10474.1"; Scaffold005 rebuild transcript 1825942 1827136 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1825942 1825982 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.1"; Scaffold005 rebuild exon 1826062 1826470 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.1"; Scaffold005 rebuild exon 1826527 1826669 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.1"; Scaffold005 rebuild exon 1826980 1827136 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.1"; Scaffold005 rebuild transcript 1825942 1826673 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1825942 1825982 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.2"; Scaffold005 rebuild exon 1826062 1826470 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.2"; Scaffold005 rebuild exon 1826527 1826673 . + . gene_id "RvY_10475"; transcript_id "RvY_10475.2"; Scaffold005 rebuild transcript 1827504 1828370 . + . gene_id "RvY_10476"; transcript_id "RvY_10476.1"; gene_name "Bromo_WDR9_I_like"; annotation "hypothetical protein."; CDD "Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; Scaffold005 rebuild exon 1827504 1827709 . + . gene_id "RvY_10476"; transcript_id "RvY_10476.1"; Scaffold005 rebuild exon 1827783 1827905 . + . gene_id "RvY_10476"; transcript_id "RvY_10476.1"; Scaffold005 rebuild exon 1828133 1828370 . + . gene_id "RvY_10476"; transcript_id "RvY_10476.1"; Scaffold005 rebuild transcript 1828707 1829582 . - . gene_id "RvY_10477"; transcript_id "RvY_10477.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1828707 1829127 . - . gene_id "RvY_10477"; transcript_id "RvY_10477.1"; Scaffold005 rebuild exon 1829518 1829582 . - . gene_id "RvY_10477"; transcript_id "RvY_10477.1"; Scaffold005 rebuild transcript 1828941 1829603 . + . gene_id "RvY_10478"; transcript_id "RvY_10478.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1828941 1829603 . + . gene_id "RvY_10478"; transcript_id "RvY_10478.1"; Scaffold005 rebuild transcript 1830099 1831059 . - . gene_id "RvY_10479"; transcript_id "RvY_10479.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1830099 1830365 . - . gene_id "RvY_10479"; transcript_id "RvY_10479.1"; Scaffold005 rebuild exon 1830447 1830498 . - . gene_id "RvY_10479"; transcript_id "RvY_10479.1"; Scaffold005 rebuild exon 1830602 1830682 . - . gene_id "RvY_10479"; transcript_id "RvY_10479.1"; Scaffold005 rebuild exon 1830817 1830953 . - . gene_id "RvY_10479"; transcript_id "RvY_10479.1"; Scaffold005 rebuild exon 1831021 1831059 . - . gene_id "RvY_10479"; transcript_id "RvY_10479.1"; Scaffold005 rebuild transcript 1832401 1833342 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.1"; gene_name "(1,2)PPT(3)Palm_thioest"; annotation "(1,2)putative Palmitoyl-protein thioesterase 1(3)hypothetical protein."; Pfam "[Palm_thioest] Palmitoyl protein thioesterase"; CDD "Palmitoyl protein thioesterase."; EC "EC3.1.2.22"; KO "(1,2)K01074"; similar_genes "(1)PPT1_MOUSE(e-value:6.6e-40;bit-score:162.0)(2)PPT1_HUMAN(e-value:2.2e-36;bit-score:150.0)(3)PPT1_HUMAN(e-value:8.2e-17;bit-score:85.0)"; Scaffold005 rebuild exon 1832401 1832479 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.1"; Scaffold005 rebuild exon 1832586 1832815 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.1"; Scaffold005 rebuild exon 1832933 1832977 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.1"; Scaffold005 rebuild exon 1833055 1833126 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.1"; Scaffold005 rebuild exon 1833214 1833342 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.1"; Scaffold005 rebuild transcript 1831506 1832604 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; gene_name "(1,2)PPT(3)Palm_thioest"; annotation "(1,2)putative Palmitoyl-protein thioesterase 1(3)hypothetical protein."; Pfam "[Palm_thioest] Palmitoyl protein thioesterase"; CDD "Palmitoyl protein thioesterase."; EC "EC3.1.2.22"; KO "(1,2)K01074"; similar_genes "(1)PPT1_MOUSE(e-value:6.6e-40;bit-score:162.0)(2)PPT1_HUMAN(e-value:2.2e-36;bit-score:150.0)(3)PPT1_HUMAN(e-value:8.2e-17;bit-score:85.0)"; Scaffold005 rebuild exon 1831506 1831631 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild exon 1831747 1831869 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild exon 1831979 1832106 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild exon 1832200 1832279 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild exon 1832348 1832396 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild exon 1832453 1832479 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild exon 1832586 1832604 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.2"; Scaffold005 rebuild transcript 1831506 1832110 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.3"; gene_name "(1,2)PPT(3)Palm_thioest"; annotation "(1,2)putative Palmitoyl-protein thioesterase 1(3)hypothetical protein."; Pfam "[Palm_thioest] Palmitoyl protein thioesterase"; CDD "Palmitoyl protein thioesterase."; EC "EC3.1.2.22"; KO "(1,2)K01074"; similar_genes "(1)PPT1_MOUSE(e-value:6.6e-40;bit-score:162.0)(2)PPT1_HUMAN(e-value:2.2e-36;bit-score:150.0)(3)PPT1_HUMAN(e-value:8.2e-17;bit-score:85.0)"; Scaffold005 rebuild exon 1831506 1831631 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.3"; Scaffold005 rebuild exon 1831747 1831869 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.3"; Scaffold005 rebuild exon 1831979 1832110 . + . gene_id "RvY_10480"; transcript_id "RvY_10480.3"; Scaffold005 rebuild transcript 1834274 1835400 . + . gene_id "RvY_10481"; transcript_id "RvY_10481.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold005 rebuild exon 1834274 1835194 . + . gene_id "RvY_10481"; transcript_id "RvY_10481.1"; Scaffold005 rebuild exon 1835257 1835400 . + . gene_id "RvY_10481"; transcript_id "RvY_10481.1"; Scaffold005 rebuild transcript 1834274 1835239 . + . gene_id "RvY_10481"; transcript_id "RvY_10481.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold005 rebuild exon 1834274 1835239 . + . gene_id "RvY_10481"; transcript_id "RvY_10481.2"; Scaffold005 rebuild transcript 1836424 1837374 . + . gene_id "RvY_10482"; transcript_id "RvY_10482.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 1836424 1837374 . + . gene_id "RvY_10482"; transcript_id "RvY_10482.1"; Scaffold005 rebuild transcript 1838170 1839576 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.1"; annotation "hypothetical protein."; Pfam "(2)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 1838170 1839198 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.1"; Scaffold005 rebuild exon 1839400 1839576 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.1"; Scaffold005 rebuild transcript 1838383 1839576 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.2"; annotation "hypothetical protein."; Pfam "(2)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 1838383 1839198 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.2"; Scaffold005 rebuild exon 1839400 1839576 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.2"; Scaffold005 rebuild transcript 1838656 1839576 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.3"; annotation "hypothetical protein."; Pfam "(2)[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 1838656 1839198 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.3"; Scaffold005 rebuild exon 1839400 1839576 . + . gene_id "RvY_10483"; transcript_id "RvY_10483.3"; Scaffold005 rebuild transcript 1841685 1841990 . + . gene_id "RvY_10484"; transcript_id "RvY_10484.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1841685 1841785 . + . gene_id "RvY_10484"; transcript_id "RvY_10484.1"; Scaffold005 rebuild exon 1841894 1841990 . + . gene_id "RvY_10484"; transcript_id "RvY_10484.1"; Scaffold005 rebuild transcript 1844920 1845565 . + . gene_id "RvY_10485"; transcript_id "RvY_10485.1"; gene_name "PRK06075"; annotation "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial"; Pfam "[Complex1_49kDa] Respiratory-chain NADH dehydrogenase, 49 Kd subunit"; CDD "NADH dehydrogenase subunit D; Validated"; EC "EC1.6.5.3"; similar_genes "NDUS2_PONPY(e-value:1.5e-75;bit-score:280.0)"; Scaffold005 rebuild exon 1844920 1845216 . + . gene_id "RvY_10485"; transcript_id "RvY_10485.1"; Scaffold005 rebuild exon 1845290 1845565 . + . gene_id "RvY_10485"; transcript_id "RvY_10485.1"; Scaffold005 rebuild transcript 1846592 1853287 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; gene_name "vWA_VGCC_like"; annotation "hypothetical protein."; Pfam "[VWA_3] von Willebrand factor type A domain|[VWA_N] VWA N-terminal|[Cache_1] Cache domain|[VWA_2] von Willebrand factor type A domain|[VWA] von Willebrand factor type A domain"; CDD "VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex."; Scaffold005 rebuild exon 1846592 1847262 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1847395 1847682 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1847787 1848001 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1848100 1848255 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1848347 1848400 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1848476 1848650 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1848713 1848899 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1848964 1849092 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1849157 1849301 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1849629 1849882 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1850060 1850142 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1850213 1850266 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1850332 1850420 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1850608 1850736 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1850818 1850869 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1850985 1851061 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1851134 1851187 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1851588 1851698 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1851804 1851956 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1852239 1852393 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1852554 1852703 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild exon 1853114 1853287 . - . gene_id "RvY_10486"; transcript_id "RvY_10486.1"; Scaffold005 rebuild transcript 1853618 1853899 . - . gene_id "RvY_10487"; transcript_id "RvY_10487.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1853618 1853899 . - . gene_id "RvY_10487"; transcript_id "RvY_10487.1"; Scaffold005 rebuild transcript 1857224 1870633 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; gene_name "COG5141"; annotation "putative Protein AF-10"; Pfam "[zf-HC5HC2H_2] PHD-zinc-finger like domain|[zf-HC5HC2H] PHD-like zinc-binding domain|[PHD] PHD-finger|[PHD_2] PHD-finger"; CDD "PHD zinc finger-containing protein [General function prediction only]"; similar_genes "AF10_MOUSE(e-value:4.2e-33;bit-score:139.0)"; Scaffold005 rebuild exon 1857224 1857332 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1861483 1861625 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1863617 1863781 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1863942 1864045 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1864200 1864305 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1864578 1865036 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1865455 1866031 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1867446 1867845 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1867942 1868078 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1868258 1868411 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1868475 1868566 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1869396 1870093 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1870179 1870290 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild exon 1870485 1870633 . + . gene_id "RvY_10488"; transcript_id "RvY_10488.1"; Scaffold005 rebuild transcript 1871447 1873131 . + . gene_id "RvY_10489"; transcript_id "RvY_10489.1"; gene_name "BRT1"; annotation "sinapate 1-glucosyltransferase [EC:2.4.1.120]"; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.120|EC2.4.1.210"; KO "K13068"; similar_genes "LGT_CITUN(e-value:4.7e-13;bit-score:72.0)"; Scaffold005 rebuild exon 1871447 1871867 . + . gene_id "RvY_10489"; transcript_id "RvY_10489.1"; Scaffold005 rebuild exon 1872119 1873131 . + . gene_id "RvY_10489"; transcript_id "RvY_10489.1"; Scaffold005 rebuild transcript 1873848 1875409 . + . gene_id "RvY_10490"; transcript_id "RvY_10490.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.-"; similar_genes "COGT1_ARATH(e-value:2.7e-13;bit-score:73.0)"; Scaffold005 rebuild exon 1873848 1874220 . + . gene_id "RvY_10490"; transcript_id "RvY_10490.1"; Scaffold005 rebuild exon 1874406 1875409 . + . gene_id "RvY_10490"; transcript_id "RvY_10490.1"; Scaffold005 rebuild transcript 1876399 1880663 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; gene_name "SH3KBP1"; annotation "SH3 domain-containing kinase-binding protein 1"; Pfam "[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; KO "K12470"; similar_genes "SH3K1_MOUSE(e-value:8.0e-13;bit-score:72.0)"; Scaffold005 rebuild exon 1876399 1876441 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1876582 1876701 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1877377 1877610 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1877828 1877967 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1878078 1878150 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1878259 1878449 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1878552 1878588 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1878911 1879588 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1879673 1879797 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1879948 1880110 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild exon 1880428 1880663 . + . gene_id "RvY_10491"; transcript_id "RvY_10491.1"; Scaffold005 rebuild transcript 1881198 1884105 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold005 rebuild exon 1881198 1881335 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1881484 1881760 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1881831 1881965 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1882034 1882273 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1882626 1882822 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1882891 1883007 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1883074 1883126 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1883229 1883289 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild exon 1883512 1884105 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.1"; Scaffold005 rebuild transcript 1881979 1884105 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold005 rebuild exon 1881979 1882273 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; Scaffold005 rebuild exon 1882626 1882822 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; Scaffold005 rebuild exon 1882891 1883007 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; Scaffold005 rebuild exon 1883074 1883126 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; Scaffold005 rebuild exon 1883229 1883289 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; Scaffold005 rebuild exon 1883512 1884105 . - . gene_id "RvY_10492"; transcript_id "RvY_10492.2"; Scaffold005 rebuild transcript 1885207 1886349 . + . gene_id "RvY_10493"; transcript_id "RvY_10493.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1885207 1886349 . + . gene_id "RvY_10493"; transcript_id "RvY_10493.1"; Scaffold005 rebuild transcript 1886372 1887844 . - . gene_id "RvY_10494"; transcript_id "RvY_10494.1"; annotation "hypothetical protein."; Pfam "[zf-C2HC_2] zinc-finger of a C2HC-type"; similar_genes "ZN474_MOUSE(e-value:1.9e-16;bit-score:84.0)"; Scaffold005 rebuild exon 1886372 1886514 . - . gene_id "RvY_10494"; transcript_id "RvY_10494.1"; Scaffold005 rebuild exon 1886574 1886903 . - . gene_id "RvY_10494"; transcript_id "RvY_10494.1"; Scaffold005 rebuild exon 1887067 1887556 . - . gene_id "RvY_10494"; transcript_id "RvY_10494.1"; Scaffold005 rebuild exon 1887758 1887844 . - . gene_id "RvY_10494"; transcript_id "RvY_10494.1"; Scaffold005 rebuild transcript 1890787 1891137 . + . gene_id "RvY_10495"; transcript_id "RvY_10495.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1890787 1891137 . + . gene_id "RvY_10495"; transcript_id "RvY_10495.1"; Scaffold005 rebuild transcript 1891228 1893263 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; gene_name "LDH"; annotation "L-lactate dehydrogenase"; Pfam "[Ldh_1_N] lactate/malate dehydrogenase, NAD binding domain|[Ldh_1_C] lactate/malate dehydrogenase, alpha/beta C-terminal domain"; CDD "A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others."; EC "EC1.1.1.27"; KO "K00016"; similar_genes "LDH_DROME(e-value:1.3e-70;bit-score:264.0)"; Scaffold005 rebuild exon 1891228 1891323 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1891418 1891453 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1891671 1891742 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1891939 1892029 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1892104 1892169 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1892229 1892465 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1892750 1892867 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild exon 1892975 1893263 . + . gene_id "RvY_10496"; transcript_id "RvY_10496.1"; Scaffold005 rebuild transcript 1894673 1896206 . + . gene_id "RvY_10497"; transcript_id "RvY_10497.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1894673 1895034 . + . gene_id "RvY_10497"; transcript_id "RvY_10497.1"; Scaffold005 rebuild exon 1895112 1895350 . + . gene_id "RvY_10497"; transcript_id "RvY_10497.1"; Scaffold005 rebuild exon 1895421 1895651 . + . gene_id "RvY_10497"; transcript_id "RvY_10497.1"; Scaffold005 rebuild exon 1895722 1896206 . + . gene_id "RvY_10497"; transcript_id "RvY_10497.1"; Scaffold005 rebuild transcript 1898223 1900033 . + . gene_id "RvY_10498"; transcript_id "RvY_10498.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold005 rebuild exon 1898223 1898584 . + . gene_id "RvY_10498"; transcript_id "RvY_10498.1"; Scaffold005 rebuild exon 1898666 1898913 . + . gene_id "RvY_10498"; transcript_id "RvY_10498.1"; Scaffold005 rebuild exon 1898977 1899207 . + . gene_id "RvY_10498"; transcript_id "RvY_10498.1"; Scaffold005 rebuild exon 1899285 1900033 . + . gene_id "RvY_10498"; transcript_id "RvY_10498.1"; Scaffold005 rebuild transcript 1900116 1900978 . - . gene_id "RvY_10499"; transcript_id "RvY_10499.1"; annotation "putative Atrial natriuretic peptide receptor 1"; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "ANPRA_HUMAN(e-value:3.0e-27;bit-score:120.0)"; Scaffold005 rebuild exon 1900116 1900204 . - . gene_id "RvY_10499"; transcript_id "RvY_10499.1"; Scaffold005 rebuild exon 1900277 1900411 . - . gene_id "RvY_10499"; transcript_id "RvY_10499.1"; Scaffold005 rebuild exon 1900624 1900795 . - . gene_id "RvY_10499"; transcript_id "RvY_10499.1"; Scaffold005 rebuild exon 1900856 1900978 . - . gene_id "RvY_10499"; transcript_id "RvY_10499.1"; Scaffold005 rebuild transcript 1901046 1901311 . - . gene_id "RvY_10500"; transcript_id "RvY_10500.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1901046 1901139 . - . gene_id "RvY_10500"; transcript_id "RvY_10500.1"; Scaffold005 rebuild exon 1901205 1901311 . - . gene_id "RvY_10500"; transcript_id "RvY_10500.1"; Scaffold005 rebuild transcript 1901424 1902191 . - . gene_id "RvY_10501"; transcript_id "RvY_10501.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold005 rebuild exon 1901424 1901611 . - . gene_id "RvY_10501"; transcript_id "RvY_10501.1"; Scaffold005 rebuild exon 1901807 1902191 . - . gene_id "RvY_10501"; transcript_id "RvY_10501.1"; Scaffold005 rebuild transcript 1902302 1903970 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold005 rebuild exon 1902302 1902555 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; Scaffold005 rebuild exon 1902733 1903011 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; Scaffold005 rebuild exon 1903095 1903227 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; Scaffold005 rebuild exon 1903294 1903385 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; Scaffold005 rebuild exon 1903456 1903794 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; Scaffold005 rebuild exon 1903862 1903970 . - . gene_id "RvY_10502"; transcript_id "RvY_10502.1"; Scaffold005 rebuild transcript 1904473 1905153 . - . gene_id "RvY_10503"; transcript_id "RvY_10503.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1904473 1905153 . - . gene_id "RvY_10503"; transcript_id "RvY_10503.1"; Scaffold005 rebuild transcript 1905479 1906719 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "(1)SCRT1_MOUSE(e-value:2.6e-24;bit-score:110.0)(2)SCRT2_MOUSE(e-value:6.2e-15;bit-score:79.0)"; Scaffold005 rebuild exon 1905479 1905607 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.1"; Scaffold005 rebuild exon 1905708 1905803 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.1"; Scaffold005 rebuild exon 1905920 1905994 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.1"; Scaffold005 rebuild exon 1906063 1906719 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.1"; Scaffold005 rebuild transcript 1905793 1906719 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.2"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "(1)SCRT1_MOUSE(e-value:2.6e-24;bit-score:110.0)(2)SCRT2_MOUSE(e-value:6.2e-15;bit-score:79.0)"; Scaffold005 rebuild exon 1905793 1905819 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.2"; Scaffold005 rebuild exon 1905920 1905994 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.2"; Scaffold005 rebuild exon 1906063 1906719 . - . gene_id "RvY_10504"; transcript_id "RvY_10504.2"; Scaffold005 rebuild transcript 1907511 1909218 . + . gene_id "RvY_10505"; transcript_id "RvY_10505.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold005 rebuild exon 1907511 1907606 . + . gene_id "RvY_10505"; transcript_id "RvY_10505.1"; Scaffold005 rebuild exon 1907684 1907873 . + . gene_id "RvY_10505"; transcript_id "RvY_10505.1"; Scaffold005 rebuild exon 1908100 1908270 . + . gene_id "RvY_10505"; transcript_id "RvY_10505.1"; Scaffold005 rebuild exon 1908493 1908781 . + . gene_id "RvY_10505"; transcript_id "RvY_10505.1"; Scaffold005 rebuild exon 1908846 1909218 . + . gene_id "RvY_10505"; transcript_id "RvY_10505.1"; Scaffold005 rebuild transcript 1911640 1915615 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; gene_name "K06860"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[AAA_11] AAA domain|[Viral_helicase1] Viral (Superfamily 1) RNA helicase|[AAA_12] AAA domain|[Helicase_RecD] Helicase|[AAA_19] Part of AAA domain|[AAA_30] AAA domain"; CDD "Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]"; KO "K06860"; Scaffold005 rebuild exon 1911640 1911762 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1911824 1912007 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1912126 1912278 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1912361 1912444 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1912518 1912798 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1912851 1913087 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1913153 1913572 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1913666 1913955 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1914041 1914175 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1915185 1915317 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild exon 1915394 1915615 . - . gene_id "RvY_10506"; transcript_id "RvY_10506.1"; Scaffold005 rebuild transcript 1916944 1917714 . + . gene_id "RvY_10507"; transcript_id "RvY_10507.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1916944 1917714 . + . gene_id "RvY_10507"; transcript_id "RvY_10507.1"; Scaffold005 rebuild transcript 1917871 1918311 . + . gene_id "RvY_10508"; transcript_id "RvY_10508.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 1917871 1918311 . + . gene_id "RvY_10508"; transcript_id "RvY_10508.1"; Scaffold005 rebuild transcript 1918320 1919096 . + . gene_id "RvY_10509"; transcript_id "RvY_10509.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 1918320 1919096 . + . gene_id "RvY_10509"; transcript_id "RvY_10509.1"; Scaffold005 rebuild transcript 1919333 1919845 . + . gene_id "RvY_10510"; transcript_id "RvY_10510.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1919333 1919845 . + . gene_id "RvY_10510"; transcript_id "RvY_10510.1"; Scaffold005 rebuild transcript 1920183 1923732 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; annotation "putative Protein FAM91A1"; similar_genes "F91A1_MOUSE(e-value:5.2e-27;bit-score:119.0)"; Scaffold005 rebuild exon 1920183 1920339 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1920440 1920591 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1920650 1921001 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1921078 1921232 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1921475 1921870 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1922071 1922381 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1922459 1922657 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1922779 1923284 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1923473 1923542 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild exon 1923613 1923732 . + . gene_id "RvY_10511"; transcript_id "RvY_10511.1"; Scaffold005 rebuild transcript 1924886 1926644 . - . gene_id "RvY_10512"; transcript_id "RvY_10512.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold005 rebuild exon 1924886 1925339 . - . gene_id "RvY_10512"; transcript_id "RvY_10512.1"; Scaffold005 rebuild exon 1925675 1926070 . - . gene_id "RvY_10512"; transcript_id "RvY_10512.1"; Scaffold005 rebuild exon 1926139 1926644 . - . gene_id "RvY_10512"; transcript_id "RvY_10512.1"; Scaffold005 rebuild transcript 1929385 1936554 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; gene_name "HepA"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[SNF2_N] SNF2 family N-terminal domain|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC6.3.2.-"; KO "K15710"; similar_genes "SHPRH_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold005 rebuild exon 1929385 1929622 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1929826 1930001 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1930077 1930256 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1930321 1930489 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1930551 1930663 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1930834 1931428 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1931625 1931813 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1931881 1932032 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1932229 1932342 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1932407 1932618 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1932863 1933605 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1933852 1934090 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1934171 1934382 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1934603 1934739 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1934812 1935151 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild exon 1935402 1936554 . - . gene_id "RvY_10513"; transcript_id "RvY_10513.1"; Scaffold005 rebuild transcript 1937198 1939346 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; annotation "hypothetical protein."; Pfam "[Sas10_Utp3_C] Sas10 C-terminal domain|[Sas10_Utp3] Sas10/Utp3/C1D family"; KO "K14767"; similar_genes "SAS10_DROME(e-value:6.5e-21;bit-score:99.0)"; Scaffold005 rebuild exon 1937198 1937220 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1937319 1937484 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1937541 1937597 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1937675 1937747 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1937845 1938050 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1938111 1938272 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1938378 1938590 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1938652 1938825 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1938926 1939189 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild exon 1939257 1939346 . + . gene_id "RvY_10514"; transcript_id "RvY_10514.1"; Scaffold005 rebuild transcript 1939978 1942270 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; gene_name "FtcD"; annotation "Formimidoyltransferase-cyclodeaminase"; Pfam "[FTCD_C] Formiminotransferase-cyclodeaminase|[FTCD] Formiminotransferase domain|[FTCD_N] Formiminotransferase domain, N-terminal subdomain"; CDD "glutamate formiminotransferase. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism."; EC "EC2.1.2.5"; KO "K13990"; similar_genes "FTCD_CHICK(e-value:3.1e-65;bit-score:246.0)"; Scaffold005 rebuild exon 1939978 1940031 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild exon 1940094 1940406 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild exon 1940508 1940596 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild exon 1940686 1941135 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild exon 1941203 1941391 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild exon 1941666 1941827 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild exon 1941893 1942270 . + . gene_id "RvY_10515"; transcript_id "RvY_10515.1"; Scaffold005 rebuild transcript 1943296 1947300 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; gene_name "B41"; annotation "Moesin/ezrin/radixin homolog 1"; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[ERM] Ezrin/radixin/moesin family|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "MOEH_AEDAE(e-value:1.1e-177;bit-score:619.0)"; Scaffold005 rebuild exon 1943296 1943460 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1943764 1943858 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1943929 1944175 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1944327 1944487 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1944857 1944966 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1945082 1945441 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1945806 1946308 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild exon 1947202 1947300 . - . gene_id "RvY_10516"; transcript_id "RvY_10516.1"; Scaffold005 rebuild transcript 1948226 1949119 . + . gene_id "RvY_10517"; transcript_id "RvY_10517.1"; gene_name "LEM"; annotation "hypothetical protein."; Pfam "[LEM]"; CDD "in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin."; Scaffold005 rebuild exon 1948226 1948313 . + . gene_id "RvY_10517"; transcript_id "RvY_10517.1"; Scaffold005 rebuild exon 1948396 1948528 . + . gene_id "RvY_10517"; transcript_id "RvY_10517.1"; Scaffold005 rebuild exon 1948726 1949119 . + . gene_id "RvY_10517"; transcript_id "RvY_10517.1"; Scaffold005 rebuild transcript 1949458 1951044 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; gene_name "rocF"; annotation "arginase [EC:3.5.3.1]"; Pfam "[Arginase] Arginase family"; CDD "arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase)."; EC "EC3.5.3.1"; KO "K01476"; similar_genes "ARGI_ASHGO(e-value:8.4e-19;bit-score:92.0)"; Scaffold005 rebuild exon 1949458 1949636 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild exon 1949715 1949851 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild exon 1949935 1950039 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild exon 1950109 1950165 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild exon 1950242 1950546 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild exon 1950635 1950814 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild exon 1950898 1951044 . - . gene_id "RvY_10518"; transcript_id "RvY_10518.1"; Scaffold005 rebuild transcript 1951644 1953830 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold005 rebuild exon 1951644 1951742 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; Scaffold005 rebuild exon 1951942 1952257 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; Scaffold005 rebuild exon 1952407 1952890 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; Scaffold005 rebuild exon 1953082 1953480 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; Scaffold005 rebuild exon 1953579 1953695 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; Scaffold005 rebuild exon 1953785 1953830 . - . gene_id "RvY_10519"; transcript_id "RvY_10519.1"; Scaffold005 rebuild transcript 1954678 1957074 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold005 rebuild exon 1954678 1954818 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1954904 1955174 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1955245 1955379 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1955478 1955729 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1955806 1956002 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1956070 1956239 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1956495 1956555 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild exon 1956625 1957074 . - . gene_id "RvY_10520"; transcript_id "RvY_10520.1"; Scaffold005 rebuild transcript 1957509 1962093 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; gene_name "(1)2A1704(2)TC.POT"; annotation "(1)hypothetical protein.(2)proton-dependent oligopeptide transporter, POT family"; Pfam "(1)[MFS_1] Major Facilitator Superfamily|[PTR2] POT family"; CDD "Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)."; KO "(1)K14206(2)K03305"; similar_genes "S15A1_RAT(e-value:6.4e-19;bit-score:92.0)"; Scaffold005 rebuild exon 1957509 1957670 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1957745 1957834 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1958019 1958110 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1958222 1958418 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1958484 1958707 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1958781 1958975 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1959176 1959307 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1959391 1959472 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1959545 1959620 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1959685 1959778 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1959874 1959963 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960029 1960121 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960193 1960275 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960346 1960385 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960449 1960489 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960582 1960672 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960739 1960838 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1960921 1961007 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1961086 1961168 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1961235 1961293 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1961382 1961404 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1961488 1961549 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1961636 1961742 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild exon 1962021 1962093 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.1"; Scaffold005 rebuild transcript 1959566 1961782 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; gene_name "(1)2A1704(2)TC.POT"; annotation "(1)hypothetical protein.(2)proton-dependent oligopeptide transporter, POT family"; Pfam "(1)[MFS_1] Major Facilitator Superfamily|[PTR2] POT family"; CDD "Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)."; KO "(1)K14206(2)K03305"; similar_genes "S15A1_RAT(e-value:6.4e-19;bit-score:92.0)"; Scaffold005 rebuild exon 1959566 1959778 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1959874 1959963 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960029 1960121 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960193 1960275 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960346 1960385 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960449 1960489 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960582 1960672 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960739 1960838 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1960921 1961007 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1961086 1961168 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1961235 1961293 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1961382 1961404 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1961488 1961549 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild exon 1961636 1961782 . - . gene_id "RvY_10521"; transcript_id "RvY_10521.2"; Scaffold005 rebuild transcript 1962728 1963845 . - . gene_id "RvY_10522"; transcript_id "RvY_10522.1"; gene_name "NNMT"; annotation "nicotinamide N-methyltransferase [EC:2.1.1.1]"; Pfam "[NNMT_PNMT_TEMT] NNMT/PNMT/TEMT family"; EC "EC2.1.1.1"; KO "K00541"; Scaffold005 rebuild exon 1962728 1963222 . - . gene_id "RvY_10522"; transcript_id "RvY_10522.1"; Scaffold005 rebuild exon 1963444 1963500 . - . gene_id "RvY_10522"; transcript_id "RvY_10522.1"; Scaffold005 rebuild exon 1963567 1963845 . - . gene_id "RvY_10522"; transcript_id "RvY_10522.1"; Scaffold005 rebuild transcript 1964346 1968610 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; gene_name "2A1704"; annotation "putative Solute carrier family 15 member 2"; Pfam "[PTR2] POT family"; CDD "Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)."; KO "K14206"; similar_genes "S15A2_RABIT(e-value:3.1e-29;bit-score:126.0)"; Scaffold005 rebuild exon 1964346 1964826 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1965182 1965323 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1965378 1965465 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1965533 1965733 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1965967 1966104 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1966180 1966431 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1966520 1966609 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1966703 1966783 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1966846 1966928 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1967001 1967040 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1967123 1967254 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1967330 1967429 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1967525 1967611 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1967701 1967842 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1967914 1967995 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1968053 1968159 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild exon 1968553 1968610 . - . gene_id "RvY_10523"; transcript_id "RvY_10523.1"; Scaffold005 rebuild transcript 1970396 1981113 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; gene_name "CPKC"; annotation "Calcium-dependent protein kinase C"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[C2]"; CDD "STKc_cPKC: Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia."; EC "EC2.7.11.13"; KO "K02677"; similar_genes "KPC1_APLCA(e-value:1.0e-129;bit-score:460.0)"; Scaffold005 rebuild exon 1970396 1970474 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1970660 1970792 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1971012 1971043 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1973421 1973503 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1974734 1974845 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1976280 1976414 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1977538 1977694 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1978003 1978237 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1978483 1978794 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1979468 1979559 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1979650 1979712 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1979792 1979930 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1980033 1980113 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1980378 1980485 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1980561 1980704 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1980851 1981010 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild exon 1981112 1981113 . + . gene_id "RvY_10524"; transcript_id "RvY_10524.1"; Scaffold005 rebuild transcript 1982107 1982635 . + . gene_id "RvY_10525"; transcript_id "RvY_10525.1"; annotation "putative Glycine-rich cell wall structural protein 1"; similar_genes "GRP1_PETHY(e-value:1.8e-27;bit-score:120.0)"; Scaffold005 rebuild exon 1982107 1982121 . + . gene_id "RvY_10525"; transcript_id "RvY_10525.1"; Scaffold005 rebuild exon 1982198 1982635 . + . gene_id "RvY_10525"; transcript_id "RvY_10525.1"; Scaffold005 rebuild transcript 1983223 1985583 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; gene_name "PilF"; annotation "hypothetical protein."; Pfam "[Cupin_8] Cupin-like domain|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]"; Scaffold005 rebuild exon 1983223 1983468 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1983589 1983923 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1983983 1984090 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1984155 1984236 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1984325 1984573 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1984668 1984773 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1985044 1985420 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild exon 1985491 1985583 . + . gene_id "RvY_10526"; transcript_id "RvY_10526.1"; Scaffold005 rebuild transcript 1987914 1988641 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1987914 1988017 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.1"; Scaffold005 rebuild exon 1988125 1988641 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.1"; Scaffold005 rebuild transcript 1988102 1988641 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1988102 1988641 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.2"; Scaffold005 rebuild transcript 1987804 1988267 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1987804 1988017 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.3"; Scaffold005 rebuild exon 1988125 1988267 . - . gene_id "RvY_10527"; transcript_id "RvY_10527.3"; Scaffold005 rebuild transcript 1989211 1991263 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; gene_name "Annexin"; annotation "hypothetical protein."; Pfam "[Annexin]"; CDD "Annexin. This family of annexins also includes giardin that has been shown to function as an annexin."; Scaffold005 rebuild exon 1989211 1989264 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1989350 1989528 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1989592 1989730 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1989801 1989866 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1990064 1990129 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1990201 1990280 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1990546 1990636 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1990718 1990831 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1990959 1991053 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild exon 1991128 1991263 . - . gene_id "RvY_10528"; transcript_id "RvY_10528.1"; Scaffold005 rebuild transcript 1992026 1993342 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; gene_name "RAB18"; annotation "putative Ras-related protein Rab-18"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|(2)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07910"; similar_genes "RAB18_CAEBR(e-value:4.5e-43;bit-score:172.0)"; Scaffold005 rebuild exon 1992026 1992135 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; Scaffold005 rebuild exon 1992250 1992343 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; Scaffold005 rebuild exon 1992541 1992702 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; Scaffold005 rebuild exon 1992784 1992942 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; Scaffold005 rebuild exon 1993030 1993147 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; Scaffold005 rebuild exon 1993272 1993342 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.1"; Scaffold005 rebuild transcript 1992227 1993342 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.2"; gene_name "RAB18"; annotation "putative Ras-related protein Rab-18"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|(2)[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation."; KO "K07910"; similar_genes "RAB18_CAEBR(e-value:4.5e-43;bit-score:172.0)"; Scaffold005 rebuild exon 1992227 1992343 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.2"; Scaffold005 rebuild exon 1992541 1992702 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.2"; Scaffold005 rebuild exon 1992784 1992942 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.2"; Scaffold005 rebuild exon 1993030 1993147 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.2"; Scaffold005 rebuild exon 1993272 1993342 . - . gene_id "RvY_10529"; transcript_id "RvY_10529.2"; Scaffold005 rebuild transcript 1994273 1995340 . + . gene_id "RvY_10530"; transcript_id "RvY_10530.1"; gene_name "PEX19"; annotation "peroxin-19"; Pfam "[Pex19] Pex19 protein family"; KO "K13337"; Scaffold005 rebuild exon 1994273 1994401 . + . gene_id "RvY_10530"; transcript_id "RvY_10530.1"; Scaffold005 rebuild exon 1994465 1994849 . + . gene_id "RvY_10530"; transcript_id "RvY_10530.1"; Scaffold005 rebuild exon 1994919 1995340 . + . gene_id "RvY_10530"; transcript_id "RvY_10530.1"; Scaffold005 rebuild transcript 1995627 1999598 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1995627 1995713 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; Scaffold005 rebuild exon 1995810 1995869 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; Scaffold005 rebuild exon 1996358 1996465 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; Scaffold005 rebuild exon 1996548 1996633 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; Scaffold005 rebuild exon 1997467 1997566 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; Scaffold005 rebuild exon 1999506 1999598 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.1"; Scaffold005 rebuild transcript 1995481 1996584 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1995481 1995713 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.2"; Scaffold005 rebuild exon 1995810 1995869 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.2"; Scaffold005 rebuild exon 1996358 1996465 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.2"; Scaffold005 rebuild exon 1996548 1996584 . - . gene_id "RvY_10531"; transcript_id "RvY_10531.2"; Scaffold005 rebuild transcript 1996395 1996580 . + . gene_id "RvY_10532"; transcript_id "RvY_10532.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 1996395 1996580 . + . gene_id "RvY_10532"; transcript_id "RvY_10532.1"; Scaffold005 rebuild transcript 2003260 2006093 . + . gene_id "RvY_10533"; transcript_id "RvY_10533.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2003260 2003302 . + . gene_id "RvY_10533"; transcript_id "RvY_10533.1"; Scaffold005 rebuild exon 2003402 2003800 . + . gene_id "RvY_10533"; transcript_id "RvY_10533.1"; Scaffold005 rebuild exon 2004052 2004762 . + . gene_id "RvY_10533"; transcript_id "RvY_10533.1"; Scaffold005 rebuild exon 2005087 2005494 . + . gene_id "RvY_10533"; transcript_id "RvY_10533.1"; Scaffold005 rebuild exon 2005675 2006093 . + . gene_id "RvY_10533"; transcript_id "RvY_10533.1"; Scaffold005 rebuild transcript 2006574 2009099 . + . gene_id "RvY_10534"; transcript_id "RvY_10534.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.-"; similar_genes "COGT3_ARATH(e-value:4.1e-14;bit-score:76.0)"; Scaffold005 rebuild exon 2006574 2006930 . + . gene_id "RvY_10534"; transcript_id "RvY_10534.1"; Scaffold005 rebuild exon 2007109 2007911 . + . gene_id "RvY_10534"; transcript_id "RvY_10534.1"; Scaffold005 rebuild exon 2008826 2009099 . + . gene_id "RvY_10534"; transcript_id "RvY_10534.1"; Scaffold005 rebuild transcript 2009773 2011547 . + . gene_id "RvY_10535"; transcript_id "RvY_10535.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "(1)EC2.4.1.-(2)EC2.4.1.215"; similar_genes "(1)Y1567_ARATH(e-value:3.1e-12;bit-score:70.0)(2)CZOG_SORBI(e-value:1.4e-10;bit-score:64.0)"; Scaffold005 rebuild exon 2009773 2010306 . + . gene_id "RvY_10535"; transcript_id "RvY_10535.1"; Scaffold005 rebuild exon 2010509 2011107 . + . gene_id "RvY_10535"; transcript_id "RvY_10535.1"; Scaffold005 rebuild exon 2011295 2011547 . + . gene_id "RvY_10535"; transcript_id "RvY_10535.1"; Scaffold005 rebuild transcript 2010284 2011111 . + . gene_id "RvY_10535"; transcript_id "RvY_10535.2"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "(1)EC2.4.1.-(2)EC2.4.1.215"; similar_genes "(1)Y1567_ARATH(e-value:3.1e-12;bit-score:70.0)(2)CZOG_SORBI(e-value:1.4e-10;bit-score:64.0)"; Scaffold005 rebuild exon 2010284 2011111 . + . gene_id "RvY_10535"; transcript_id "RvY_10535.2"; Scaffold005 rebuild transcript 2012671 2014471 . + . gene_id "RvY_10536"; transcript_id "RvY_10536.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.238"; similar_genes "ANGT_GENTR(e-value:2.4e-12;bit-score:70.0)"; Scaffold005 rebuild exon 2012671 2013201 . + . gene_id "RvY_10536"; transcript_id "RvY_10536.1"; Scaffold005 rebuild exon 2013553 2014151 . + . gene_id "RvY_10536"; transcript_id "RvY_10536.1"; Scaffold005 rebuild exon 2014219 2014471 . + . gene_id "RvY_10536"; transcript_id "RvY_10536.1"; Scaffold005 rebuild transcript 2014795 2014947 . - . gene_id "RvY_10537"; transcript_id "RvY_10537.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2014795 2014947 . - . gene_id "RvY_10537"; transcript_id "RvY_10537.1"; Scaffold005 rebuild transcript 2015888 2017325 . + . gene_id "RvY_10538"; transcript_id "RvY_10538.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.-"; similar_genes "Y1567_ARATH(e-value:3.6e-13;bit-score:73.0)"; Scaffold005 rebuild exon 2015888 2017017 . + . gene_id "RvY_10538"; transcript_id "RvY_10538.1"; Scaffold005 rebuild exon 2017079 2017325 . + . gene_id "RvY_10538"; transcript_id "RvY_10538.1"; Scaffold005 rebuild transcript 2017822 2020035 . - . gene_id "RvY_10539"; transcript_id "RvY_10539.1"; annotation "hypothetical protein."; Pfam "[RILP] Rab interacting lysosomal protein"; Scaffold005 rebuild exon 2017822 2017894 . - . gene_id "RvY_10539"; transcript_id "RvY_10539.1"; Scaffold005 rebuild exon 2017957 2018109 . - . gene_id "RvY_10539"; transcript_id "RvY_10539.1"; Scaffold005 rebuild exon 2018186 2018592 . - . gene_id "RvY_10539"; transcript_id "RvY_10539.1"; Scaffold005 rebuild exon 2018817 2019107 . - . gene_id "RvY_10539"; transcript_id "RvY_10539.1"; Scaffold005 rebuild exon 2019760 2020035 . - . gene_id "RvY_10539"; transcript_id "RvY_10539.1"; Scaffold005 rebuild transcript 2020963 2021382 . + . gene_id "RvY_10540"; transcript_id "RvY_10540.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2020963 2021382 . + . gene_id "RvY_10540"; transcript_id "RvY_10540.1"; Scaffold005 rebuild transcript 2023362 2025391 . - . gene_id "RvY_10541"; transcript_id "RvY_10541.1"; gene_name "SETD8"; annotation "histone-lysine N-methyltransferase SETD8 [EC:2.1.1.43]"; Pfam "[SET]"; EC "EC2.1.1.43"; KO "K11428"; similar_genes "SET8A_DANRE(e-value:4.0e-12;bit-score:69.0)"; Scaffold005 rebuild exon 2023362 2023587 . - . gene_id "RvY_10541"; transcript_id "RvY_10541.1"; Scaffold005 rebuild exon 2023651 2023844 . - . gene_id "RvY_10541"; transcript_id "RvY_10541.1"; Scaffold005 rebuild exon 2024080 2024315 . - . gene_id "RvY_10541"; transcript_id "RvY_10541.1"; Scaffold005 rebuild exon 2024746 2024959 . - . gene_id "RvY_10541"; transcript_id "RvY_10541.1"; Scaffold005 rebuild exon 2025032 2025391 . - . gene_id "RvY_10541"; transcript_id "RvY_10541.1"; Scaffold005 rebuild transcript 2026279 2027593 . - . gene_id "RvY_10542"; transcript_id "RvY_10542.1"; gene_name "UBA5"; annotation "Ubiquitin-like modifier-activating enzyme 5"; Pfam "[ThiF] ThiF family"; CDD "ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the Scaffold005 rebuild exon 2026279 2026826 . - . gene_id "RvY_10542"; transcript_id "RvY_10542.1"; Scaffold005 rebuild exon 2027005 2027593 . - . gene_id "RvY_10542"; transcript_id "RvY_10542.1"; Scaffold005 rebuild transcript 2027728 2028042 . + . gene_id "RvY_10543"; transcript_id "RvY_10543.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2027728 2028042 . + . gene_id "RvY_10543"; transcript_id "RvY_10543.1"; Scaffold005 rebuild transcript 2027859 2028086 . - . gene_id "RvY_10544"; transcript_id "RvY_10544.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2027859 2028086 . - . gene_id "RvY_10544"; transcript_id "RvY_10544.1"; Scaffold005 rebuild transcript 2028103 2033181 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; gene_name "Cse1"; annotation "hypothetical protein."; Pfam "[Cse1]|[IBN_N] Importin-beta N-terminal domain|[CAS_CSE1] CAS/CSE protein, C-terminus"; CDD "Cse1. This domain is present in Cse1 nuclear export receptor proteins. Cse1 mediates the nuclear export of importin alpha. This domain contains HEAT repeats."; similar_genes "XPO2_ORENI(e-value:1.1e-18;bit-score:91.0)"; Scaffold005 rebuild exon 2028103 2028342 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2028418 2028528 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2028732 2028968 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2029039 2029269 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2029353 2029520 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2029660 2029789 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2029856 2030031 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2030107 2030199 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2030449 2030539 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2030659 2030994 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2031061 2031158 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2031220 2031370 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2031435 2031634 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2031800 2031897 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2031964 2032049 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2032117 2032198 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2032266 2032409 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2032473 2032552 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild exon 2032925 2033181 . + . gene_id "RvY_10545"; transcript_id "RvY_10545.1"; Scaffold005 rebuild transcript 2033648 2035497 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; annotation "hypothetical protein."; Pfam "[BSD]"; Scaffold005 rebuild exon 2033648 2033760 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild exon 2033947 2034150 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild exon 2034221 2034335 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild exon 2034590 2034958 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild exon 2035026 2035142 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild exon 2035233 2035380 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild exon 2035445 2035497 . - . gene_id "RvY_10546"; transcript_id "RvY_10546.1"; Scaffold005 rebuild transcript 2036293 2040886 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; gene_name "VacB"; annotation "putative DIS3-like exonuclease 2"; Pfam "[RNB]"; CDD "Exoribonuclease R [Transcription]"; EC "EC3.1.13.-"; similar_genes "DI3L2_HUMAN(e-value:2.2e-36;bit-score:150.0)"; Scaffold005 rebuild exon 2036293 2036512 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2036591 2036974 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2037052 2037110 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2037205 2037330 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2037431 2037529 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2037632 2038033 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2038308 2038561 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2038647 2038791 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2038864 2039079 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2039282 2039597 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2039682 2039836 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2040031 2040774 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild exon 2040839 2040886 . + . gene_id "RvY_10547"; transcript_id "RvY_10547.1"; Scaffold005 rebuild transcript 2042987 2044413 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; gene_name "(1)VacB"; annotation "hypothetical protein."; Pfam "[RNB]"; CDD "(1)Exoribonuclease R [Transcription]"; Scaffold005 rebuild exon 2042987 2043012 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; Scaffold005 rebuild exon 2043101 2043206 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; Scaffold005 rebuild exon 2043281 2043546 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; Scaffold005 rebuild exon 2043664 2043823 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; Scaffold005 rebuild exon 2043932 2044066 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; Scaffold005 rebuild exon 2044147 2044413 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.1"; Scaffold005 rebuild transcript 2042063 2043169 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.2"; gene_name "(1)VacB"; annotation "hypothetical protein."; Pfam "[RNB]"; CDD "(1)Exoribonuclease R [Transcription]"; Scaffold005 rebuild exon 2042063 2042169 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.2"; Scaffold005 rebuild exon 2042246 2042697 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.2"; Scaffold005 rebuild exon 2042770 2042825 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.2"; Scaffold005 rebuild exon 2042893 2043012 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.2"; Scaffold005 rebuild exon 2043101 2043169 . + . gene_id "RvY_10548"; transcript_id "RvY_10548.2"; Scaffold005 rebuild transcript 2045171 2045545 . - . gene_id "RvY_10549"; transcript_id "RvY_10549.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2045171 2045409 . - . gene_id "RvY_10549"; transcript_id "RvY_10549.1"; Scaffold005 rebuild exon 2045479 2045545 . - . gene_id "RvY_10549"; transcript_id "RvY_10549.1"; Scaffold005 rebuild transcript 2045838 2047742 . - . gene_id "RvY_10550"; transcript_id "RvY_10550.1"; annotation "hypothetical protein."; Pfam "[HtrL_YibB] Bacterial protein of unknown function (HtrL_YibB)"; Scaffold005 rebuild exon 2045838 2046206 . - . gene_id "RvY_10550"; transcript_id "RvY_10550.1"; Scaffold005 rebuild exon 2046849 2047742 . - . gene_id "RvY_10550"; transcript_id "RvY_10550.1"; Scaffold005 rebuild transcript 2047996 2049709 . + . gene_id "RvY_10551"; transcript_id "RvY_10551.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2047996 2048050 . + . gene_id "RvY_10551"; transcript_id "RvY_10551.1"; Scaffold005 rebuild exon 2048193 2049709 . + . gene_id "RvY_10551"; transcript_id "RvY_10551.1"; Scaffold005 rebuild transcript 2050404 2052831 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.1"; gene_name "(1)KCNC4"; annotation "Potassium voltage-gated channel protein Shaw"; Pfam "[Ion_trans_2] Ion channel|(1)[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; KO "(1)K04890"; similar_genes "(1)KCNAW_DROME(e-value:7.1e-103;bit-score:371.0)(2,3)KCNAW_DROME(e-value:5.6e-54;bit-score:208.0)"; Scaffold005 rebuild exon 2050404 2050748 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.1"; Scaffold005 rebuild exon 2051046 2051225 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.1"; Scaffold005 rebuild exon 2051434 2052009 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.1"; Scaffold005 rebuild exon 2052433 2052831 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.1"; Scaffold005 rebuild transcript 2051476 2052831 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.2"; gene_name "(1)KCNC4"; annotation "Potassium voltage-gated channel protein Shaw"; Pfam "[Ion_trans_2] Ion channel|(1)[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; KO "(1)K04890"; similar_genes "(1)KCNAW_DROME(e-value:7.1e-103;bit-score:371.0)(2,3)KCNAW_DROME(e-value:5.6e-54;bit-score:208.0)"; Scaffold005 rebuild exon 2051476 2052012 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.2"; Scaffold005 rebuild exon 2052433 2052831 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.2"; Scaffold005 rebuild transcript 2051476 2052831 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.3"; gene_name "(1)KCNC4"; annotation "Potassium voltage-gated channel protein Shaw"; Pfam "[Ion_trans_2] Ion channel|(1)[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; KO "(1)K04890"; similar_genes "(1)KCNAW_DROME(e-value:7.1e-103;bit-score:371.0)(2,3)KCNAW_DROME(e-value:5.6e-54;bit-score:208.0)"; Scaffold005 rebuild exon 2051476 2052009 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.3"; Scaffold005 rebuild exon 2052433 2052831 . + . gene_id "RvY_10552"; transcript_id "RvY_10552.3"; Scaffold005 rebuild transcript 2053203 2054687 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.1"; annotation "hypothetical protein."; similar_genes "K22E_MOUSE(e-value:1.2e-07;bit-score:55.0)"; Scaffold005 rebuild exon 2053203 2054039 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.1"; Scaffold005 rebuild exon 2054256 2054318 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.1"; Scaffold005 rebuild exon 2054402 2054467 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.1"; Scaffold005 rebuild exon 2054574 2054687 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.1"; Scaffold005 rebuild transcript 2053203 2054471 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.2"; annotation "hypothetical protein."; similar_genes "K22E_MOUSE(e-value:1.2e-07;bit-score:55.0)"; Scaffold005 rebuild exon 2053203 2054039 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.2"; Scaffold005 rebuild exon 2054256 2054471 . + . gene_id "RvY_10553"; transcript_id "RvY_10553.2"; Scaffold005 rebuild transcript 2054800 2056172 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold005 rebuild exon 2054800 2054889 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; Scaffold005 rebuild exon 2054949 2055304 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; Scaffold005 rebuild exon 2055371 2055416 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; Scaffold005 rebuild exon 2055547 2055654 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; Scaffold005 rebuild exon 2055726 2055906 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; Scaffold005 rebuild exon 2055973 2056172 . - . gene_id "RvY_10554"; transcript_id "RvY_10554.1"; Scaffold005 rebuild transcript 2056215 2057418 . - . gene_id "RvY_10555"; transcript_id "RvY_10555.1"; gene_name "(1)FUT4"; annotation "(1)galactoside alpha-1,3-fucosyltransferase 4 [EC:2.4.1.-](2)hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-"; KO "(1)K07632"; similar_genes "(1)FUCTC_DROME(e-value:1.2e-09;bit-score:61.0)"; Scaffold005 rebuild exon 2056215 2056626 . - . gene_id "RvY_10555"; transcript_id "RvY_10555.1"; Scaffold005 rebuild exon 2056805 2057418 . - . gene_id "RvY_10555"; transcript_id "RvY_10555.1"; Scaffold005 rebuild transcript 2056774 2057418 . - . gene_id "RvY_10555"; transcript_id "RvY_10555.2"; gene_name "(1)FUT4"; annotation "(1)galactoside alpha-1,3-fucosyltransferase 4 [EC:2.4.1.-](2)hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "(1)EC2.4.1.-"; KO "(1)K07632"; similar_genes "(1)FUCTC_DROME(e-value:1.2e-09;bit-score:61.0)"; Scaffold005 rebuild exon 2056774 2057418 . - . gene_id "RvY_10555"; transcript_id "RvY_10555.2"; Scaffold005 rebuild transcript 2058063 2058577 . - . gene_id "RvY_10556"; transcript_id "RvY_10556.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2058063 2058206 . - . gene_id "RvY_10556"; transcript_id "RvY_10556.1"; Scaffold005 rebuild exon 2058368 2058577 . - . gene_id "RvY_10556"; transcript_id "RvY_10556.1"; Scaffold005 rebuild transcript 2057839 2058117 . - . gene_id "RvY_10556"; transcript_id "RvY_10556.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2057839 2058117 . - . gene_id "RvY_10556"; transcript_id "RvY_10556.2"; Scaffold005 rebuild transcript 2058377 2060273 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2058377 2058457 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; Scaffold005 rebuild exon 2058653 2058760 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; Scaffold005 rebuild exon 2058829 2058874 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; Scaffold005 rebuild exon 2058940 2059011 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; Scaffold005 rebuild exon 2059070 2059275 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; Scaffold005 rebuild exon 2060187 2060273 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.1"; Scaffold005 rebuild transcript 2058377 2059403 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2058377 2058457 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; Scaffold005 rebuild exon 2058653 2058760 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; Scaffold005 rebuild exon 2058829 2058874 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; Scaffold005 rebuild exon 2058940 2059011 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; Scaffold005 rebuild exon 2059070 2059275 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; Scaffold005 rebuild exon 2059338 2059403 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.2"; Scaffold005 rebuild transcript 2058653 2059320 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2058653 2058760 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.3"; Scaffold005 rebuild exon 2058829 2058874 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.3"; Scaffold005 rebuild exon 2058940 2059011 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.3"; Scaffold005 rebuild exon 2059070 2059320 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.3"; Scaffold005 rebuild transcript 2058377 2059031 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.4"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2058377 2058457 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.4"; Scaffold005 rebuild exon 2058653 2058760 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.4"; Scaffold005 rebuild exon 2058829 2058874 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.4"; Scaffold005 rebuild exon 2058940 2059031 . + . gene_id "RvY_10557"; transcript_id "RvY_10557.4"; Scaffold005 rebuild transcript 2060395 2064399 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; gene_name "B561"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders."; Scaffold005 rebuild exon 2060395 2060730 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2060914 2061018 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2061235 2061388 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2062086 2062522 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2062590 2062685 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2062749 2062923 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2062998 2063105 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2063173 2063288 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2063349 2063501 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2063724 2063823 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2063909 2064052 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2064125 2064219 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild exon 2064304 2064399 . + . gene_id "RvY_10558"; transcript_id "RvY_10558.1"; Scaffold005 rebuild transcript 2065636 2067282 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; annotation "putative Alternative oxidase, mitochondrial"; Pfam "[AOX] Alternative oxidase"; EC "EC1.-.-.-"; similar_genes "AOX_AJECA(e-value:6.4e-36;bit-score:148.0)"; Scaffold005 rebuild exon 2065636 2065740 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2065809 2066026 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2066099 2066319 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2066383 2066440 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2066506 2066624 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2066713 2066996 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2067059 2067093 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild exon 2067192 2067282 . + . gene_id "RvY_10559"; transcript_id "RvY_10559.1"; Scaffold005 rebuild transcript 2068084 2069930 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; gene_name "(1,2)NARS(3)asnC"; annotation "(1,2)asparaginyl-tRNA synthetase [EC:6.1.1.22](3)hypothetical protein."; Pfam "(1)[tRNA_anti] OB-fold nucleic acid binding domain|[tRNA-synt_2] tRNA synthetases class II (D, K and N)"; CDD "asparaginyl-tRNA synthetase; Validated"; EC "EC6.1.1.22"; KO "(1,2)K01893"; similar_genes "(1,2)SYN_MYCPE(e-value:2.1e-13;bit-score:74.0)(3)SYNM_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold005 rebuild exon 2068084 2068112 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2068184 2068277 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2068332 2068444 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2068512 2068635 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2068705 2068845 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2068916 2068996 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2069063 2069166 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2069254 2069386 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2069461 2069562 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild exon 2069766 2069930 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.1"; Scaffold005 rebuild transcript 2068795 2070358 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; gene_name "(1,2)NARS(3)asnC"; annotation "(1,2)asparaginyl-tRNA synthetase [EC:6.1.1.22](3)hypothetical protein."; Pfam "(1)[tRNA_anti] OB-fold nucleic acid binding domain|[tRNA-synt_2] tRNA synthetases class II (D, K and N)"; CDD "asparaginyl-tRNA synthetase; Validated"; EC "EC6.1.1.22"; KO "(1,2)K01893"; similar_genes "(1,2)SYN_MYCPE(e-value:2.1e-13;bit-score:74.0)(3)SYNM_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold005 rebuild exon 2068795 2068845 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild exon 2068916 2068996 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild exon 2069063 2069166 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild exon 2069254 2069386 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild exon 2069461 2069562 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild exon 2069766 2069870 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild exon 2069954 2070358 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.2"; Scaffold005 rebuild transcript 2069336 2070358 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.3"; gene_name "(1,2)NARS(3)asnC"; annotation "(1,2)asparaginyl-tRNA synthetase [EC:6.1.1.22](3)hypothetical protein."; Pfam "(1)[tRNA_anti] OB-fold nucleic acid binding domain|[tRNA-synt_2] tRNA synthetases class II (D, K and N)"; CDD "asparaginyl-tRNA synthetase; Validated"; EC "EC6.1.1.22"; KO "(1,2)K01893"; similar_genes "(1,2)SYN_MYCPE(e-value:2.1e-13;bit-score:74.0)(3)SYNM_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold005 rebuild exon 2069336 2069386 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.3"; Scaffold005 rebuild exon 2069461 2069562 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.3"; Scaffold005 rebuild exon 2069766 2069870 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.3"; Scaffold005 rebuild exon 2069954 2070358 . + . gene_id "RvY_10560"; transcript_id "RvY_10560.3"; Scaffold005 rebuild transcript 2070947 2072145 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; annotation "hypothetical protein."; Pfam "[HORMA]"; Scaffold005 rebuild exon 2070947 2071037 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; Scaffold005 rebuild exon 2071093 2071213 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; Scaffold005 rebuild exon 2071289 2071553 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; Scaffold005 rebuild exon 2071646 2071690 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; Scaffold005 rebuild exon 2071757 2071884 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; Scaffold005 rebuild exon 2071947 2072145 . - . gene_id "RvY_10561"; transcript_id "RvY_10561.1"; Scaffold005 rebuild transcript 2072505 2073172 . + . gene_id "RvY_10562"; transcript_id "RvY_10562.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2072505 2072691 . + . gene_id "RvY_10562"; transcript_id "RvY_10562.1"; Scaffold005 rebuild exon 2072758 2072829 . + . gene_id "RvY_10562"; transcript_id "RvY_10562.1"; Scaffold005 rebuild exon 2072922 2073172 . + . gene_id "RvY_10562"; transcript_id "RvY_10562.1"; Scaffold005 rebuild transcript 2073747 2077234 . - . gene_id "RvY_10563"; transcript_id "RvY_10563.1"; gene_name "SOX17"; annotation "putative Putative transcription factor SOX-15"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; KO "K04495"; similar_genes "SOX15_DROME(e-value:6.1e-30;bit-score:129.0)"; Scaffold005 rebuild exon 2073747 2074735 . - . gene_id "RvY_10563"; transcript_id "RvY_10563.1"; Scaffold005 rebuild exon 2076704 2076791 . - . gene_id "RvY_10563"; transcript_id "RvY_10563.1"; Scaffold005 rebuild exon 2076878 2077234 . - . gene_id "RvY_10563"; transcript_id "RvY_10563.1"; Scaffold005 rebuild transcript 2077964 2080606 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; gene_name "SRP1"; annotation "putative Sperm-associated antigen 6"; Pfam "[Proteasom_PSMB] Proteasome non-ATPase 26S subunit|[Arm] Armadillo/beta-catenin-like repeat|[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat|[HEAT] HEAT repeat"; CDD "Karyopherin (importin) alpha [Intracellular trafficking and secretion]"; similar_genes "SPAG6_MOUSE(e-value:4.1e-31;bit-score:132.0)"; Scaffold005 rebuild exon 2077964 2078114 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2078309 2078454 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2078531 2078656 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2078725 2078922 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2078995 2079147 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2079337 2079510 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2079584 2079871 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2079942 2080043 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2080132 2080298 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2080371 2080466 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild exon 2080567 2080606 . - . gene_id "RvY_10564"; transcript_id "RvY_10564.1"; Scaffold005 rebuild transcript 2079621 2080015 . + . gene_id "RvY_10565"; transcript_id "RvY_10565.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2079621 2079866 . + . gene_id "RvY_10565"; transcript_id "RvY_10565.1"; Scaffold005 rebuild exon 2079950 2080015 . + . gene_id "RvY_10565"; transcript_id "RvY_10565.1"; Scaffold005 rebuild transcript 2079621 2079926 . + . gene_id "RvY_10565"; transcript_id "RvY_10565.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2079621 2079926 . + . gene_id "RvY_10565"; transcript_id "RvY_10565.2"; Scaffold005 rebuild transcript 2080250 2080860 . + . gene_id "RvY_10566"; transcript_id "RvY_10566.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2080250 2080322 . + . gene_id "RvY_10566"; transcript_id "RvY_10566.1"; Scaffold005 rebuild exon 2080384 2080487 . + . gene_id "RvY_10566"; transcript_id "RvY_10566.1"; Scaffold005 rebuild exon 2080681 2080860 . + . gene_id "RvY_10566"; transcript_id "RvY_10566.1"; Scaffold005 rebuild transcript 2080865 2081957 . + . gene_id "RvY_10567"; transcript_id "RvY_10567.1"; gene_name "aden_kin_iso1"; annotation "hypothetical protein."; Pfam "[ADK] Adenylate kinase|[AAA_33] AAA domain"; CDD "adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351."; Scaffold005 rebuild exon 2080865 2080867 . + . gene_id "RvY_10567"; transcript_id "RvY_10567.1"; Scaffold005 rebuild exon 2080952 2081041 . + . gene_id "RvY_10567"; transcript_id "RvY_10567.1"; Scaffold005 rebuild exon 2081126 2081257 . + . gene_id "RvY_10567"; transcript_id "RvY_10567.1"; Scaffold005 rebuild exon 2081347 2081463 . + . gene_id "RvY_10567"; transcript_id "RvY_10567.1"; Scaffold005 rebuild exon 2081550 2081957 . + . gene_id "RvY_10567"; transcript_id "RvY_10567.1"; Scaffold005 rebuild transcript 2083201 2085427 . + . gene_id "RvY_10568"; transcript_id "RvY_10568.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2083201 2083518 . + . gene_id "RvY_10568"; transcript_id "RvY_10568.1"; Scaffold005 rebuild exon 2083625 2084069 . + . gene_id "RvY_10568"; transcript_id "RvY_10568.1"; Scaffold005 rebuild exon 2084475 2084806 . + . gene_id "RvY_10568"; transcript_id "RvY_10568.1"; Scaffold005 rebuild exon 2084869 2085006 . + . gene_id "RvY_10568"; transcript_id "RvY_10568.1"; Scaffold005 rebuild exon 2085074 2085427 . + . gene_id "RvY_10568"; transcript_id "RvY_10568.1"; Scaffold005 rebuild transcript 2085525 2085830 . + . gene_id "RvY_10569"; transcript_id "RvY_10569.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2085525 2085830 . + . gene_id "RvY_10569"; transcript_id "RvY_10569.1"; Scaffold005 rebuild transcript 2086629 2086829 . + . gene_id "RvY_10570"; transcript_id "RvY_10570.1"; annotation "hypothetical protein."; Pfam "[4F5] 4F5 protein family"; Scaffold005 rebuild exon 2086629 2086829 . + . gene_id "RvY_10570"; transcript_id "RvY_10570.1"; Scaffold005 rebuild transcript 2087335 2089357 . - . gene_id "RvY_10571"; transcript_id "RvY_10571.1"; gene_name "ACTR8"; annotation "actin-related protein 8"; Pfam "[Actin]"; CDD "Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins."; KO "K11673"; similar_genes "ARP8_DANRE(e-value:8.0e-13;bit-score:72.0)"; Scaffold005 rebuild exon 2087335 2087391 . - . gene_id "RvY_10571"; transcript_id "RvY_10571.1"; Scaffold005 rebuild exon 2087487 2088548 . - . gene_id "RvY_10571"; transcript_id "RvY_10571.1"; Scaffold005 rebuild exon 2088742 2088823 . - . gene_id "RvY_10571"; transcript_id "RvY_10571.1"; Scaffold005 rebuild exon 2088897 2089357 . - . gene_id "RvY_10571"; transcript_id "RvY_10571.1"; Scaffold005 rebuild transcript 2090116 2090361 . - . gene_id "RvY_10572"; transcript_id "RvY_10572.1"; gene_name "LSM6"; annotation "putative U6 snRNA-associated Sm-like protein LSm6"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K12625"; similar_genes "LSM6_HUMAN(e-value:2.3e-29;bit-score:127.0)"; Scaffold005 rebuild exon 2090116 2090361 . - . gene_id "RvY_10572"; transcript_id "RvY_10572.1"; Scaffold005 rebuild transcript 2091489 2093319 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; gene_name "Annexin"; annotation "hypothetical protein."; Pfam "[Annexin]"; CDD "Annexin. This family of annexins also includes giardin that has been shown to function as an annexin."; similar_genes "ANXA4_RAT(e-value:3.7e-19;bit-score:93.0)"; Scaffold005 rebuild exon 2091489 2091609 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2091697 2091791 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2091866 2091979 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2092249 2092339 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2092459 2092538 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2092605 2092800 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2092878 2092928 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2093002 2093183 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild exon 2093266 2093319 . + . gene_id "RvY_10573"; transcript_id "RvY_10573.1"; Scaffold005 rebuild transcript 2093848 2096320 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2093848 2094248 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.1"; Scaffold005 rebuild exon 2094419 2094818 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.1"; Scaffold005 rebuild exon 2095255 2095539 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.1"; Scaffold005 rebuild exon 2095754 2096320 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.1"; Scaffold005 rebuild transcript 2096307 2097586 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2096307 2096320 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.2"; Scaffold005 rebuild exon 2096585 2097362 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.2"; Scaffold005 rebuild exon 2097461 2097586 . - . gene_id "RvY_10574"; transcript_id "RvY_10574.2"; Scaffold005 rebuild transcript 2098153 2099275 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2098153 2098191 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; Scaffold005 rebuild exon 2098257 2098478 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; Scaffold005 rebuild exon 2098549 2098571 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; Scaffold005 rebuild exon 2098766 2098898 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; Scaffold005 rebuild exon 2098957 2099123 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; Scaffold005 rebuild exon 2099209 2099275 . + . gene_id "RvY_10575"; transcript_id "RvY_10575.1"; Scaffold005 rebuild transcript 2100118 2101281 . + . gene_id "RvY_10576"; transcript_id "RvY_10576.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2100118 2100192 . + . gene_id "RvY_10576"; transcript_id "RvY_10576.1"; Scaffold005 rebuild exon 2100300 2100574 . + . gene_id "RvY_10576"; transcript_id "RvY_10576.1"; Scaffold005 rebuild exon 2100752 2100878 . + . gene_id "RvY_10576"; transcript_id "RvY_10576.1"; Scaffold005 rebuild exon 2100951 2101117 . + . gene_id "RvY_10576"; transcript_id "RvY_10576.1"; Scaffold005 rebuild exon 2101203 2101281 . + . gene_id "RvY_10576"; transcript_id "RvY_10576.1"; Scaffold005 rebuild transcript 2101855 2103228 . + . gene_id "RvY_10577"; transcript_id "RvY_10577.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2101855 2102429 . + . gene_id "RvY_10577"; transcript_id "RvY_10577.1"; Scaffold005 rebuild exon 2102631 2102766 . + . gene_id "RvY_10577"; transcript_id "RvY_10577.1"; Scaffold005 rebuild exon 2102885 2103051 . + . gene_id "RvY_10577"; transcript_id "RvY_10577.1"; Scaffold005 rebuild exon 2103132 2103228 . + . gene_id "RvY_10577"; transcript_id "RvY_10577.1"; Scaffold005 rebuild transcript 2104611 2105602 . + . gene_id "RvY_10578"; transcript_id "RvY_10578.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold005 rebuild exon 2104611 2104667 . + . gene_id "RvY_10578"; transcript_id "RvY_10578.1"; Scaffold005 rebuild exon 2105107 2105148 . + . gene_id "RvY_10578"; transcript_id "RvY_10578.1"; Scaffold005 rebuild exon 2105259 2105405 . + . gene_id "RvY_10578"; transcript_id "RvY_10578.1"; Scaffold005 rebuild exon 2105477 2105602 . + . gene_id "RvY_10578"; transcript_id "RvY_10578.1"; Scaffold005 rebuild transcript 2106060 2106885 . + . gene_id "RvY_10579"; transcript_id "RvY_10579.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold005 rebuild exon 2106060 2106143 . + . gene_id "RvY_10579"; transcript_id "RvY_10579.1"; Scaffold005 rebuild exon 2106217 2106387 . + . gene_id "RvY_10579"; transcript_id "RvY_10579.1"; Scaffold005 rebuild exon 2106664 2106747 . + . gene_id "RvY_10579"; transcript_id "RvY_10579.1"; Scaffold005 rebuild exon 2106823 2106885 . + . gene_id "RvY_10579"; transcript_id "RvY_10579.1"; Scaffold005 rebuild transcript 2107470 2108373 . - . gene_id "RvY_10580"; transcript_id "RvY_10580.1"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[BAR]|[SH3_1] SH3 domain"; Scaffold005 rebuild exon 2107470 2107815 . - . gene_id "RvY_10580"; transcript_id "RvY_10580.1"; Scaffold005 rebuild exon 2107899 2108089 . - . gene_id "RvY_10580"; transcript_id "RvY_10580.1"; Scaffold005 rebuild exon 2108158 2108373 . - . gene_id "RvY_10580"; transcript_id "RvY_10580.1"; Scaffold005 rebuild transcript 2109455 2111643 . - . gene_id "RvY_10581"; transcript_id "RvY_10581.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2109455 2109505 . - . gene_id "RvY_10581"; transcript_id "RvY_10581.1"; Scaffold005 rebuild exon 2109582 2109675 . - . gene_id "RvY_10581"; transcript_id "RvY_10581.1"; Scaffold005 rebuild exon 2109741 2110066 . - . gene_id "RvY_10581"; transcript_id "RvY_10581.1"; Scaffold005 rebuild exon 2110391 2111153 . - . gene_id "RvY_10581"; transcript_id "RvY_10581.1"; Scaffold005 rebuild exon 2111213 2111643 . - . gene_id "RvY_10581"; transcript_id "RvY_10581.1"; Scaffold005 rebuild transcript 2112009 2113226 . + . gene_id "RvY_10582"; transcript_id "RvY_10582.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 2112009 2113226 . + . gene_id "RvY_10582"; transcript_id "RvY_10582.1"; Scaffold005 rebuild transcript 2113444 2114091 . - . gene_id "RvY_10583"; transcript_id "RvY_10583.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2113444 2114091 . - . gene_id "RvY_10583"; transcript_id "RvY_10583.1"; Scaffold005 rebuild transcript 2114223 2115865 . - . gene_id "RvY_10584"; transcript_id "RvY_10584.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2114223 2114645 . - . gene_id "RvY_10584"; transcript_id "RvY_10584.1"; Scaffold005 rebuild exon 2115821 2115865 . - . gene_id "RvY_10584"; transcript_id "RvY_10584.1"; Scaffold005 rebuild transcript 2117144 2118010 . + . gene_id "RvY_10585"; transcript_id "RvY_10585.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold005 rebuild exon 2117144 2117227 . + . gene_id "RvY_10585"; transcript_id "RvY_10585.1"; Scaffold005 rebuild exon 2117405 2117642 . + . gene_id "RvY_10585"; transcript_id "RvY_10585.1"; Scaffold005 rebuild exon 2117710 2117887 . + . gene_id "RvY_10585"; transcript_id "RvY_10585.1"; Scaffold005 rebuild exon 2117926 2118010 . + . gene_id "RvY_10585"; transcript_id "RvY_10585.1"; Scaffold005 rebuild transcript 2118837 2121810 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; gene_name "(1,3)IPT_PCSR"; annotation "hypothetical protein."; Pfam "[TIG] IPT/TIG domain"; CDD "(1,3)IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains."; Scaffold005 rebuild exon 2118837 2119068 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild exon 2119165 2119263 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild exon 2119368 2119496 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild exon 2119567 2119701 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild exon 2119759 2120094 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild exon 2120635 2121147 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild exon 2121443 2121810 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.1"; Scaffold005 rebuild transcript 2120730 2122905 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; gene_name "(1,3)IPT_PCSR"; annotation "hypothetical protein."; Pfam "[TIG] IPT/TIG domain"; CDD "(1,3)IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains."; Scaffold005 rebuild exon 2120730 2121147 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; Scaffold005 rebuild exon 2121443 2121736 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; Scaffold005 rebuild exon 2121811 2122064 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; Scaffold005 rebuild exon 2122130 2122388 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; Scaffold005 rebuild exon 2122459 2122643 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; Scaffold005 rebuild exon 2122717 2122905 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.2"; Scaffold005 rebuild transcript 2118837 2121152 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; gene_name "(1,3)IPT_PCSR"; annotation "hypothetical protein."; Pfam "[TIG] IPT/TIG domain"; CDD "(1,3)IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains."; Scaffold005 rebuild exon 2118837 2119068 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; Scaffold005 rebuild exon 2119165 2119263 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; Scaffold005 rebuild exon 2119368 2119496 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; Scaffold005 rebuild exon 2119567 2119701 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; Scaffold005 rebuild exon 2119759 2120094 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; Scaffold005 rebuild exon 2120635 2121152 . + . gene_id "RvY_10586"; transcript_id "RvY_10586.3"; Scaffold005 rebuild transcript 2124648 2125049 . + . gene_id "RvY_10587"; transcript_id "RvY_10587.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2124648 2125049 . + . gene_id "RvY_10587"; transcript_id "RvY_10587.1"; Scaffold005 rebuild transcript 2125176 2125559 . + . gene_id "RvY_10588"; transcript_id "RvY_10588.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2125176 2125559 . + . gene_id "RvY_10588"; transcript_id "RvY_10588.1"; Scaffold005 rebuild transcript 2126266 2126577 . - . gene_id "RvY_10589"; transcript_id "RvY_10589.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2126266 2126577 . - . gene_id "RvY_10589"; transcript_id "RvY_10589.1"; Scaffold005 rebuild transcript 2127916 2129492 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2127916 2127939 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.1"; Scaffold005 rebuild exon 2128006 2128104 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.1"; Scaffold005 rebuild exon 2128869 2129492 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.1"; Scaffold005 rebuild transcript 2127316 2128903 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.2"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2127316 2127533 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.2"; Scaffold005 rebuild exon 2127599 2127939 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.2"; Scaffold005 rebuild exon 2128006 2128104 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.2"; Scaffold005 rebuild exon 2128869 2128903 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.2"; Scaffold005 rebuild transcript 2127316 2128112 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.3"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2127316 2127533 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.3"; Scaffold005 rebuild exon 2127599 2127939 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.3"; Scaffold005 rebuild exon 2128006 2128112 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.3"; Scaffold005 rebuild transcript 2128621 2129492 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.4"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2128621 2128659 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.4"; Scaffold005 rebuild exon 2128869 2129492 . + . gene_id "RvY_10590"; transcript_id "RvY_10590.4"; Scaffold005 rebuild transcript 2129207 2129467 . - . gene_id "RvY_10591"; transcript_id "RvY_10591.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2129207 2129467 . - . gene_id "RvY_10591"; transcript_id "RvY_10591.1"; Scaffold005 rebuild transcript 2130035 2132916 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2130035 2130088 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild exon 2130162 2130257 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild exon 2130319 2130526 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild exon 2130585 2132289 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild exon 2132353 2132464 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild exon 2132553 2132788 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild exon 2132877 2132916 . + . gene_id "RvY_10592"; transcript_id "RvY_10592.1"; Scaffold005 rebuild transcript 2133253 2135111 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; annotation "hypothetical protein."; Pfam "[EmrE] Multidrug resistance efflux transporter|[EamA] EamA-like transporter family"; KO "K15288"; similar_genes "S35F4_HUMAN(e-value:3.9e-08;bit-score:56.0)"; Scaffold005 rebuild exon 2133253 2133593 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2133672 2133761 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2133834 2134023 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2134097 2134228 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2134302 2134521 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2134611 2134709 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2134781 2134994 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild exon 2135075 2135111 . - . gene_id "RvY_10593"; transcript_id "RvY_10593.1"; Scaffold005 rebuild transcript 2136316 2137542 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2136316 2136348 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2136467 2136663 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2136769 2136904 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2136962 2136999 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2137101 2137124 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2137211 2137291 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2137362 2137397 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild exon 2137488 2137542 . + . gene_id "RvY_10594"; transcript_id "RvY_10594.1"; Scaffold005 rebuild transcript 2137991 2139170 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2137991 2138135 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild exon 2138214 2138289 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild exon 2138441 2138491 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild exon 2138595 2138679 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild exon 2138772 2138816 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild exon 2138886 2139019 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild exon 2139089 2139170 . + . gene_id "RvY_10595"; transcript_id "RvY_10595.1"; Scaffold005 rebuild transcript 2139491 2140048 . - . gene_id "RvY_10596"; transcript_id "RvY_10596.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2139491 2140048 . - . gene_id "RvY_10596"; transcript_id "RvY_10596.1"; Scaffold005 rebuild transcript 2141345 2141592 . - . gene_id "RvY_10597"; transcript_id "RvY_10597.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2141345 2141424 . - . gene_id "RvY_10597"; transcript_id "RvY_10597.1"; Scaffold005 rebuild exon 2141469 2141592 . - . gene_id "RvY_10597"; transcript_id "RvY_10597.1"; Scaffold005 rebuild transcript 2143399 2146285 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; gene_name "K01510"; annotation "apyrase [EC:3.6.1.5]"; Pfam "[GDA1_CD39] GDA1/CD39 (nucleoside phosphatase) family"; CDD "GDA1/CD39 (nucleoside phosphatase) family."; EC "EC3.6.1.5"; KO "K01510"; Scaffold005 rebuild exon 2143399 2143484 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2143599 2143666 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2143730 2143813 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2143898 2144143 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2144228 2144375 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2144461 2144632 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2144718 2144877 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2145111 2145400 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2145483 2145605 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2145838 2145978 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild exon 2146058 2146285 . + . gene_id "RvY_10598"; transcript_id "RvY_10598.1"; Scaffold005 rebuild transcript 2146595 2149288 . - . gene_id "RvY_10599"; transcript_id "RvY_10599.1"; annotation "hypothetical protein."; similar_genes "K1C9_MOUSE(e-value:2.5e-22;bit-score:103.0)"; Scaffold005 rebuild exon 2146595 2147724 . - . gene_id "RvY_10599"; transcript_id "RvY_10599.1"; Scaffold005 rebuild exon 2147863 2149014 . - . gene_id "RvY_10599"; transcript_id "RvY_10599.1"; Scaffold005 rebuild exon 2149117 2149288 . - . gene_id "RvY_10599"; transcript_id "RvY_10599.1"; Scaffold005 rebuild transcript 2150589 2152496 . - . gene_id "RvY_10600"; transcript_id "RvY_10600.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2150589 2152496 . - . gene_id "RvY_10600"; transcript_id "RvY_10600.1"; Scaffold005 rebuild transcript 2152721 2153879 . - . gene_id "RvY_10601"; transcript_id "RvY_10601.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2152721 2153319 . - . gene_id "RvY_10601"; transcript_id "RvY_10601.1"; Scaffold005 rebuild exon 2153388 2153570 . - . gene_id "RvY_10601"; transcript_id "RvY_10601.1"; Scaffold005 rebuild exon 2153735 2153879 . - . gene_id "RvY_10601"; transcript_id "RvY_10601.1"; Scaffold005 rebuild transcript 2157392 2157553 . - . gene_id "RvY_10602"; transcript_id "RvY_10602.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2157392 2157553 . - . gene_id "RvY_10602"; transcript_id "RvY_10602.1"; Scaffold005 rebuild transcript 2157643 2162728 . + . gene_id "RvY_10603"; transcript_id "RvY_10603.1"; gene_name "HOX"; annotation "Homeobox protein SIX6"; Pfam "[Homeobox_KN] Homeobox KN domain|[Homeobox]"; CDD "Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes"; similar_genes "SIX6_HUMAN(e-value:3.9e-61;bit-score:232.0)"; Scaffold005 rebuild exon 2157643 2158014 . + . gene_id "RvY_10603"; transcript_id "RvY_10603.1"; Scaffold005 rebuild exon 2158386 2158753 . + . gene_id "RvY_10603"; transcript_id "RvY_10603.1"; Scaffold005 rebuild exon 2162257 2162728 . + . gene_id "RvY_10603"; transcript_id "RvY_10603.1"; Scaffold005 rebuild transcript 2166414 2166635 . - . gene_id "RvY_10604"; transcript_id "RvY_10604.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2166414 2166635 . - . gene_id "RvY_10604"; transcript_id "RvY_10604.1"; Scaffold005 rebuild transcript 2171796 2172005 . - . gene_id "RvY_10605"; transcript_id "RvY_10605.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2171796 2172005 . - . gene_id "RvY_10605"; transcript_id "RvY_10605.1"; Scaffold005 rebuild transcript 2172807 2173259 . - . gene_id "RvY_10606"; transcript_id "RvY_10606.1"; gene_name "TRP14_like"; annotation "hypothetical protein."; Pfam "[DUF953] Eukaryotic protein of unknown function (DUF953)"; CDD "Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases."; Scaffold005 rebuild exon 2172807 2173259 . - . gene_id "RvY_10606"; transcript_id "RvY_10606.1"; Scaffold005 rebuild transcript 2173680 2174157 . - . gene_id "RvY_10607"; transcript_id "RvY_10607.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2173680 2173945 . - . gene_id "RvY_10607"; transcript_id "RvY_10607.1"; Scaffold005 rebuild exon 2174028 2174157 . - . gene_id "RvY_10607"; transcript_id "RvY_10607.1"; Scaffold005 rebuild transcript 2174255 2174747 . - . gene_id "RvY_10608"; transcript_id "RvY_10608.1"; gene_name "RP-L13"; annotation "large subunit ribosomal protein L13"; Pfam "[Ribosomal_L13] Ribosomal protein L13"; CDD "Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies."; KO "K02871"; Scaffold005 rebuild exon 2174255 2174361 . - . gene_id "RvY_10608"; transcript_id "RvY_10608.1"; Scaffold005 rebuild exon 2174449 2174572 . - . gene_id "RvY_10608"; transcript_id "RvY_10608.1"; Scaffold005 rebuild exon 2174676 2174747 . - . gene_id "RvY_10608"; transcript_id "RvY_10608.1"; Scaffold005 rebuild transcript 2175403 2179088 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; gene_name "RAD54L"; annotation "DNA repair and recombination protein RAD54-like"; Pfam "[HDA2-3] Class II histone deacetylase complex subunits 2 and 3|[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K10875"; similar_genes "RAD54_MOUSE(e-value:1.2e-104;bit-score:377.0)"; Scaffold005 rebuild exon 2175403 2175882 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild exon 2176180 2176452 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild exon 2176534 2176627 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild exon 2176923 2177416 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild exon 2177804 2178174 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild exon 2178237 2178499 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild exon 2178733 2179088 . + . gene_id "RvY_10609"; transcript_id "RvY_10609.1"; Scaffold005 rebuild transcript 2179487 2184833 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; gene_name "DSRM"; annotation "hypothetical protein."; Pfam "[G-patch]|[dsrm] Double-stranded RNA binding motif"; CDD "Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases."; Scaffold005 rebuild exon 2179487 2180688 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; Scaffold005 rebuild exon 2180826 2181512 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; Scaffold005 rebuild exon 2181799 2182155 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; Scaffold005 rebuild exon 2182288 2182748 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; Scaffold005 rebuild exon 2183058 2183826 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; Scaffold005 rebuild exon 2184065 2184833 . - . gene_id "RvY_10610"; transcript_id "RvY_10610.1"; Scaffold005 rebuild transcript 2185627 2186481 . + . gene_id "RvY_10611"; transcript_id "RvY_10611.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2185627 2185731 . + . gene_id "RvY_10611"; transcript_id "RvY_10611.1"; Scaffold005 rebuild exon 2185818 2185915 . + . gene_id "RvY_10611"; transcript_id "RvY_10611.1"; Scaffold005 rebuild exon 2185980 2186481 . + . gene_id "RvY_10611"; transcript_id "RvY_10611.1"; Scaffold005 rebuild transcript 2187813 2191685 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR47_MOUSE(e-value:7.6e-07;bit-score:52.0)"; Scaffold005 rebuild exon 2187813 2187970 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2188040 2188258 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2188615 2188908 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2188979 2189151 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2189224 2189381 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2189452 2189736 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2189817 2190155 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2190353 2190906 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild exon 2191082 2191685 . - . gene_id "RvY_10612"; transcript_id "RvY_10612.1"; Scaffold005 rebuild transcript 2192429 2192914 . - . gene_id "RvY_10613"; transcript_id "RvY_10613.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2192429 2192914 . - . gene_id "RvY_10613"; transcript_id "RvY_10613.1"; Scaffold005 rebuild transcript 2195051 2195298 . + . gene_id "RvY_10614"; transcript_id "RvY_10614.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2195051 2195174 . + . gene_id "RvY_10614"; transcript_id "RvY_10614.1"; Scaffold005 rebuild exon 2195219 2195298 . + . gene_id "RvY_10614"; transcript_id "RvY_10614.1"; Scaffold005 rebuild transcript 2197506 2198597 . + . gene_id "RvY_10615"; transcript_id "RvY_10615.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2197506 2197697 . + . gene_id "RvY_10615"; transcript_id "RvY_10615.1"; Scaffold005 rebuild exon 2197824 2197974 . + . gene_id "RvY_10615"; transcript_id "RvY_10615.1"; Scaffold005 rebuild exon 2198527 2198597 . + . gene_id "RvY_10615"; transcript_id "RvY_10615.1"; Scaffold005 rebuild transcript 2200997 2202288 . - . gene_id "RvY_10616"; transcript_id "RvY_10616.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2200997 2201319 . - . gene_id "RvY_10616"; transcript_id "RvY_10616.1"; Scaffold005 rebuild exon 2202069 2202288 . - . gene_id "RvY_10616"; transcript_id "RvY_10616.1"; Scaffold005 rebuild transcript 2202561 2203561 . + . gene_id "RvY_10617"; transcript_id "RvY_10617.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2202561 2202644 . + . gene_id "RvY_10617"; transcript_id "RvY_10617.1"; Scaffold005 rebuild exon 2203259 2203561 . + . gene_id "RvY_10617"; transcript_id "RvY_10617.1"; Scaffold005 rebuild transcript 2203972 2204564 . - . gene_id "RvY_10618"; transcript_id "RvY_10618.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2203972 2204156 . - . gene_id "RvY_10618"; transcript_id "RvY_10618.1"; Scaffold005 rebuild exon 2204225 2204564 . - . gene_id "RvY_10618"; transcript_id "RvY_10618.1"; Scaffold005 rebuild transcript 2205872 2207643 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2205872 2206941 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.1"; Scaffold005 rebuild exon 2207008 2207164 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.1"; Scaffold005 rebuild exon 2207230 2207322 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.1"; Scaffold005 rebuild exon 2207383 2207643 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.1"; Scaffold005 rebuild transcript 2205581 2207182 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2205581 2206941 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.2"; Scaffold005 rebuild exon 2207008 2207182 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.2"; Scaffold005 rebuild transcript 2205581 2206945 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2205581 2206945 . + . gene_id "RvY_10619"; transcript_id "RvY_10619.3"; Scaffold005 rebuild transcript 2208273 2209921 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold005 rebuild exon 2208273 2208280 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.1"; Scaffold005 rebuild exon 2208463 2208625 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.1"; Scaffold005 rebuild exon 2208688 2208974 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.1"; Scaffold005 rebuild exon 2209228 2209630 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.1"; Scaffold005 rebuild exon 2209706 2209921 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.1"; Scaffold005 rebuild transcript 2208464 2209921 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold005 rebuild exon 2208464 2208625 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.2"; Scaffold005 rebuild exon 2208688 2208974 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.2"; Scaffold005 rebuild exon 2209228 2209630 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.2"; Scaffold005 rebuild exon 2209706 2209921 . + . gene_id "RvY_10620"; transcript_id "RvY_10620.2"; Scaffold005 rebuild transcript 2210288 2211348 . + . gene_id "RvY_10621"; transcript_id "RvY_10621.1"; gene_name "COG5273"; annotation "hypothetical protein."; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; Scaffold005 rebuild exon 2210288 2210583 . + . gene_id "RvY_10621"; transcript_id "RvY_10621.1"; Scaffold005 rebuild exon 2210707 2210867 . + . gene_id "RvY_10621"; transcript_id "RvY_10621.1"; Scaffold005 rebuild exon 2211032 2211348 . + . gene_id "RvY_10621"; transcript_id "RvY_10621.1"; Scaffold005 rebuild transcript 2211501 2212689 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2211501 2211567 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.1"; Scaffold005 rebuild exon 2211654 2211808 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.1"; Scaffold005 rebuild exon 2211876 2211985 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.1"; Scaffold005 rebuild exon 2212188 2212689 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.1"; Scaffold005 rebuild transcript 2211501 2212689 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2211501 2211567 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.2"; Scaffold005 rebuild exon 2211654 2211808 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.2"; Scaffold005 rebuild exon 2211876 2211985 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.2"; Scaffold005 rebuild exon 2212188 2212350 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.2"; Scaffold005 rebuild exon 2212420 2212689 . + . gene_id "RvY_10622"; transcript_id "RvY_10622.2"; Scaffold005 rebuild transcript 2212916 2218865 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; gene_name "(1)ADCY6(2)K01768"; annotation "putative Adenylate cyclase type 5"; Pfam "[DUF1053] Domain of Unknown Function (DUF1053)|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.1"; KO "(1)K08046(2)K01768"; similar_genes "ADCY5_HUMAN(e-value:1.3e-40;bit-score:164.0)"; Scaffold005 rebuild exon 2212916 2213096 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2213173 2213257 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2213324 2213528 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2213734 2213997 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2214067 2214199 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2214272 2214450 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2214537 2214746 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2214823 2215021 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2215083 2215186 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2215250 2215679 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2215965 2216157 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2216571 2216779 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2217072 2217196 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2217606 2217727 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2217822 2217849 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2218303 2218500 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild exon 2218581 2218865 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.1"; Scaffold005 rebuild transcript 2212916 2217157 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; gene_name "(1)ADCY6(2)K01768"; annotation "putative Adenylate cyclase type 5"; Pfam "[DUF1053] Domain of Unknown Function (DUF1053)|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.1"; KO "(1)K08046(2)K01768"; similar_genes "ADCY5_HUMAN(e-value:1.3e-40;bit-score:164.0)"; Scaffold005 rebuild exon 2212916 2213096 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2213173 2213257 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2213324 2213528 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2213734 2213997 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2214067 2214199 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2214272 2214450 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2214537 2214746 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2214823 2215021 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2215083 2215186 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2215250 2215679 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2215965 2216157 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2216571 2216779 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild exon 2217072 2217157 . - . gene_id "RvY_10623"; transcript_id "RvY_10623.2"; Scaffold005 rebuild transcript 2216497 2216697 . + . gene_id "RvY_10624"; transcript_id "RvY_10624.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2216497 2216697 . + . gene_id "RvY_10624"; transcript_id "RvY_10624.1"; Scaffold005 rebuild transcript 2220636 2221239 . - . gene_id "RvY_10625"; transcript_id "RvY_10625.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2220636 2220808 . - . gene_id "RvY_10625"; transcript_id "RvY_10625.1"; Scaffold005 rebuild exon 2220978 2221239 . - . gene_id "RvY_10625"; transcript_id "RvY_10625.1"; Scaffold005 rebuild transcript 2222035 2223231 . - . gene_id "RvY_10626"; transcript_id "RvY_10626.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2222035 2222335 . - . gene_id "RvY_10626"; transcript_id "RvY_10626.1"; Scaffold005 rebuild exon 2222609 2222939 . - . gene_id "RvY_10626"; transcript_id "RvY_10626.1"; Scaffold005 rebuild exon 2223000 2223231 . - . gene_id "RvY_10626"; transcript_id "RvY_10626.1"; Scaffold005 rebuild transcript 2223576 2225646 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; annotation "hypothetical protein."; Pfam "(1)[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold005 rebuild exon 2223576 2224042 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild exon 2224121 2224249 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild exon 2224329 2224473 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild exon 2224544 2224679 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild exon 2224867 2225059 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild exon 2225164 2225328 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild exon 2225412 2225646 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.1"; Scaffold005 rebuild transcript 2223576 2224967 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; annotation "hypothetical protein."; Pfam "(1)[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold005 rebuild exon 2223576 2223737 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild exon 2223810 2223961 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild exon 2224016 2224042 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild exon 2224121 2224249 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild exon 2224329 2224473 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild exon 2224544 2224679 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild exon 2224867 2224967 . - . gene_id "RvY_10627"; transcript_id "RvY_10627.2"; Scaffold005 rebuild transcript 2226719 2227253 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.1"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold005 rebuild exon 2226719 2226867 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.1"; Scaffold005 rebuild exon 2227094 2227253 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.1"; Scaffold005 rebuild transcript 2226629 2227149 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.2"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold005 rebuild exon 2226629 2226637 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.2"; Scaffold005 rebuild exon 2226723 2226867 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.2"; Scaffold005 rebuild exon 2227094 2227149 . - . gene_id "RvY_10628"; transcript_id "RvY_10628.2"; Scaffold005 rebuild transcript 2227321 2227533 . + . gene_id "RvY_10629"; transcript_id "RvY_10629.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2227321 2227533 . + . gene_id "RvY_10629"; transcript_id "RvY_10629.1"; Scaffold005 rebuild transcript 2228148 2229362 . - . gene_id "RvY_10630"; transcript_id "RvY_10630.1"; gene_name "K01175"; annotation "hypothetical protein."; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold005 rebuild exon 2228148 2228562 . - . gene_id "RvY_10630"; transcript_id "RvY_10630.1"; Scaffold005 rebuild exon 2228629 2228819 . - . gene_id "RvY_10630"; transcript_id "RvY_10630.1"; Scaffold005 rebuild exon 2228919 2229114 . - . gene_id "RvY_10630"; transcript_id "RvY_10630.1"; Scaffold005 rebuild exon 2229223 2229362 . - . gene_id "RvY_10630"; transcript_id "RvY_10630.1"; Scaffold005 rebuild transcript 2230355 2232300 . + . gene_id "RvY_10631"; transcript_id "RvY_10631.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2230355 2230864 . + . gene_id "RvY_10631"; transcript_id "RvY_10631.1"; Scaffold005 rebuild exon 2230976 2231345 . + . gene_id "RvY_10631"; transcript_id "RvY_10631.1"; Scaffold005 rebuild exon 2231606 2232300 . + . gene_id "RvY_10631"; transcript_id "RvY_10631.1"; Scaffold005 rebuild transcript 2232775 2233425 . - . gene_id "RvY_10632"; transcript_id "RvY_10632.1"; annotation "hypothetical protein."; Pfam "[DUF837]"; Scaffold005 rebuild exon 2232775 2233425 . - . gene_id "RvY_10632"; transcript_id "RvY_10632.1"; Scaffold005 rebuild transcript 2235321 2235866 . + . gene_id "RvY_10633"; transcript_id "RvY_10633.1"; gene_name "Cls"; annotation "hypothetical protein."; Pfam "[PLDc_2] PLD-like domain"; CDD "Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]"; Scaffold005 rebuild exon 2235321 2235866 . + . gene_id "RvY_10633"; transcript_id "RvY_10633.1"; Scaffold005 rebuild transcript 2235921 2236232 . + . gene_id "RvY_10634"; transcript_id "RvY_10634.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2235921 2236232 . + . gene_id "RvY_10634"; transcript_id "RvY_10634.1"; Scaffold005 rebuild transcript 2236376 2239928 . - . gene_id "RvY_10635"; transcript_id "RvY_10635.1"; gene_name "TBX6"; annotation "putative T-box transcription factor TBX20"; Pfam "[T-box]"; CDD "T-box. The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations."; KO "K10180"; similar_genes "TBX20_CHICK(e-value:4.8e-34;bit-score:142.0)"; Scaffold005 rebuild exon 2236376 2236866 . - . gene_id "RvY_10635"; transcript_id "RvY_10635.1"; Scaffold005 rebuild exon 2237116 2237239 . - . gene_id "RvY_10635"; transcript_id "RvY_10635.1"; Scaffold005 rebuild exon 2237388 2237655 . - . gene_id "RvY_10635"; transcript_id "RvY_10635.1"; Scaffold005 rebuild exon 2239618 2239819 . - . gene_id "RvY_10635"; transcript_id "RvY_10635.1"; Scaffold005 rebuild exon 2239898 2239928 . - . gene_id "RvY_10635"; transcript_id "RvY_10635.1"; Scaffold005 rebuild transcript 2242139 2245620 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; gene_name "Herpes_BLLF1"; annotation "hypothetical protein."; CDD "Herpes virus major outer envelope glycoprotein (BLLF1). This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo."; Scaffold005 rebuild exon 2242139 2242286 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; Scaffold005 rebuild exon 2242380 2242500 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; Scaffold005 rebuild exon 2242655 2243011 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; Scaffold005 rebuild exon 2243325 2243503 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; Scaffold005 rebuild exon 2244145 2244326 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; Scaffold005 rebuild exon 2244610 2245620 . + . gene_id "RvY_10636"; transcript_id "RvY_10636.1"; Scaffold005 rebuild transcript 2246468 2247151 . + . gene_id "RvY_10637"; transcript_id "RvY_10637.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2246468 2247151 . + . gene_id "RvY_10637"; transcript_id "RvY_10637.1"; Scaffold005 rebuild transcript 2247404 2247781 . - . gene_id "RvY_10638"; transcript_id "RvY_10638.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2247404 2247781 . - . gene_id "RvY_10638"; transcript_id "RvY_10638.1"; Scaffold005 rebuild transcript 2248255 2251634 . - . gene_id "RvY_10639"; transcript_id "RvY_10639.1"; gene_name "PX_SNX14"; annotation "hypothetical protein."; Pfam "[PXA]|[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs."; Scaffold005 rebuild exon 2248255 2249673 . - . gene_id "RvY_10639"; transcript_id "RvY_10639.1"; Scaffold005 rebuild exon 2249922 2250601 . - . gene_id "RvY_10639"; transcript_id "RvY_10639.1"; Scaffold005 rebuild exon 2250770 2251634 . - . gene_id "RvY_10639"; transcript_id "RvY_10639.1"; Scaffold005 rebuild transcript 2253253 2253618 . - . gene_id "RvY_10640"; transcript_id "RvY_10640.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2253253 2253618 . - . gene_id "RvY_10640"; transcript_id "RvY_10640.1"; Scaffold005 rebuild transcript 2254412 2257201 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2254412 2254595 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; Scaffold005 rebuild exon 2255186 2255648 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; Scaffold005 rebuild exon 2255737 2256041 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; Scaffold005 rebuild exon 2256434 2256640 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; Scaffold005 rebuild exon 2256717 2256998 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; Scaffold005 rebuild exon 2257119 2257201 . - . gene_id "RvY_10641"; transcript_id "RvY_10641.1"; Scaffold005 rebuild transcript 2258998 2261370 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; similar_genes "MFS11_XENLA(e-value:7.8e-09;bit-score:58.0)"; Scaffold005 rebuild exon 2258998 2259138 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2259202 2259220 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2259322 2259465 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2259541 2259691 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2259766 2259819 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2259901 2260083 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2260154 2260185 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2260255 2260449 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2260508 2260676 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2260754 2260794 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2260989 2261083 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild exon 2261161 2261370 . + . gene_id "RvY_10642"; transcript_id "RvY_10642.1"; Scaffold005 rebuild transcript 2261953 2266131 . - . gene_id "RvY_10643"; transcript_id "RvY_10643.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2261953 2262627 . - . gene_id "RvY_10643"; transcript_id "RvY_10643.1"; Scaffold005 rebuild exon 2262930 2263610 . - . gene_id "RvY_10643"; transcript_id "RvY_10643.1"; Scaffold005 rebuild exon 2263875 2264710 . - . gene_id "RvY_10643"; transcript_id "RvY_10643.1"; Scaffold005 rebuild exon 2265095 2265695 . - . gene_id "RvY_10643"; transcript_id "RvY_10643.1"; Scaffold005 rebuild exon 2265805 2266131 . - . gene_id "RvY_10643"; transcript_id "RvY_10643.1"; Scaffold005 rebuild transcript 2268054 2273631 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[Clathrin] Region in Clathrin and VPS|[zf-rbx1] RING-H2 zinc finger|[Vps8] Golgi CORVET complex core vacuolar protein 8|[zf-RING_2] Ring finger domain"; Scaffold005 rebuild exon 2268054 2268098 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2268169 2268236 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2268325 2268658 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2268761 2268844 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2269008 2269178 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2269390 2269728 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2269901 2270024 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2270098 2270243 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2270319 2270460 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2270683 2270795 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2270890 2271044 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2271288 2271447 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2271524 2271663 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2271732 2271816 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2272011 2272249 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2272485 2273133 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2273292 2273470 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild exon 2273529 2273631 . + . gene_id "RvY_10644"; transcript_id "RvY_10644.1"; Scaffold005 rebuild transcript 2274367 2277197 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; annotation "hypothetical protein."; Pfam "[DUF2151] Cell cycle and development regulator"; Scaffold005 rebuild exon 2274367 2274572 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2274637 2274793 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2274861 2274885 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2274974 2275143 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2275316 2275459 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2275543 2275724 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2275799 2276056 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2276148 2276274 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2276341 2276781 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2276848 2277094 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild exon 2277175 2277197 . - . gene_id "RvY_10645"; transcript_id "RvY_10645.1"; Scaffold005 rebuild transcript 2277807 2281107 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; gene_name "SMARCE1"; annotation "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1"; Pfam "[HMG_box] HMG (high mobility group) box"; CDD "HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions."; KO "K11651"; Scaffold005 rebuild exon 2277807 2278120 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2278181 2278487 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2278549 2279253 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2279318 2279467 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2279544 2279677 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2279775 2280081 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2280314 2280451 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2280528 2280881 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild exon 2280940 2281107 . - . gene_id "RvY_10646"; transcript_id "RvY_10646.1"; Scaffold005 rebuild transcript 2281518 2284094 . + . gene_id "RvY_10647"; transcript_id "RvY_10647.1"; annotation "hypothetical protein."; Pfam "[MCRS_N] N-terminal region of micro-spherule protein"; Scaffold005 rebuild exon 2281518 2281665 . + . gene_id "RvY_10647"; transcript_id "RvY_10647.1"; Scaffold005 rebuild exon 2281721 2282005 . + . gene_id "RvY_10647"; transcript_id "RvY_10647.1"; Scaffold005 rebuild exon 2282268 2282755 . + . gene_id "RvY_10647"; transcript_id "RvY_10647.1"; Scaffold005 rebuild exon 2283020 2283578 . + . gene_id "RvY_10647"; transcript_id "RvY_10647.1"; Scaffold005 rebuild exon 2283658 2284094 . + . gene_id "RvY_10647"; transcript_id "RvY_10647.1"; Scaffold005 rebuild transcript 2284867 2289126 . - . gene_id "RvY_10648"; transcript_id "RvY_10648.1"; gene_name "HTR1A"; annotation "5-hydroxytryptamine (serotonin) receptor 1A"; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04153"; similar_genes "5HT1D_CANFA(e-value:3.8e-21;bit-score:99.0)"; Scaffold005 rebuild exon 2284867 2285088 . - . gene_id "RvY_10648"; transcript_id "RvY_10648.1"; Scaffold005 rebuild exon 2285177 2285969 . - . gene_id "RvY_10648"; transcript_id "RvY_10648.1"; Scaffold005 rebuild exon 2286434 2286536 . - . gene_id "RvY_10648"; transcript_id "RvY_10648.1"; Scaffold005 rebuild exon 2288055 2288157 . - . gene_id "RvY_10648"; transcript_id "RvY_10648.1"; Scaffold005 rebuild exon 2288941 2289126 . - . gene_id "RvY_10648"; transcript_id "RvY_10648.1"; Scaffold005 rebuild transcript 2293011 2299791 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; gene_name "HISPPD"; annotation "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2"; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; EC "EC2.7.4.21|EC2.7.4.24"; KO "K13024"; similar_genes "VIP2_XENLA(e-value:8.1e-136;bit-score:480.0)"; Scaffold005 rebuild exon 2293011 2293564 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2293992 2294174 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2294296 2294434 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2294663 2294914 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2294975 2295089 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2295169 2295402 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2295631 2295775 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2295866 2296074 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2296158 2296270 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2296332 2296594 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2296776 2297142 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2297337 2297552 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2297612 2297875 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2297947 2298053 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2298127 2298260 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2298330 2298646 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2299019 2299695 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild exon 2299761 2299791 . - . gene_id "RvY_10649"; transcript_id "RvY_10649.1"; Scaffold005 rebuild transcript 2301272 2301889 . + . gene_id "RvY_10650"; transcript_id "RvY_10650.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2301272 2301300 . + . gene_id "RvY_10650"; transcript_id "RvY_10650.1"; Scaffold005 rebuild exon 2301370 2301710 . + . gene_id "RvY_10650"; transcript_id "RvY_10650.1"; Scaffold005 rebuild exon 2301789 2301889 . + . gene_id "RvY_10650"; transcript_id "RvY_10650.1"; Scaffold005 rebuild transcript 2302185 2304354 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; annotation "hypothetical protein."; Pfam "[MADF_DNA_bdg] Alcohol dehydrogenase transcription factor Myb/SANT-like"; Scaffold005 rebuild exon 2302185 2302195 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; Scaffold005 rebuild exon 2302263 2302430 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; Scaffold005 rebuild exon 2302495 2302940 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; Scaffold005 rebuild exon 2303009 2303165 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; Scaffold005 rebuild exon 2303240 2303510 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; Scaffold005 rebuild exon 2304244 2304354 . - . gene_id "RvY_10651"; transcript_id "RvY_10651.1"; Scaffold005 rebuild transcript 2304478 2304738 . + . gene_id "RvY_10652"; transcript_id "RvY_10652.1"; gene_name "UBCc"; annotation "hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this Scaffold005 rebuild exon 2304478 2304738 . + . gene_id "RvY_10652"; transcript_id "RvY_10652.1"; Scaffold005 rebuild transcript 2306107 2306361 . + . gene_id "RvY_10653"; transcript_id "RvY_10653.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2306107 2306361 . + . gene_id "RvY_10653"; transcript_id "RvY_10653.1"; Scaffold005 rebuild transcript 2306565 2311869 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ion_trans] Ion transport protein|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 2306565 2306676 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2306757 2306878 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2306947 2307132 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2307218 2307433 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2307502 2307667 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2307738 2307919 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2308061 2308373 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2308432 2308502 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2308591 2308683 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2308770 2308826 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2308889 2309140 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2309360 2309421 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2309489 2309541 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2309610 2309694 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2309827 2309906 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2309975 2310144 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2310202 2310414 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2310512 2310963 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2311021 2311261 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild exon 2311504 2311869 . - . gene_id "RvY_10654"; transcript_id "RvY_10654.1"; Scaffold005 rebuild transcript 2312572 2315089 . - . gene_id "RvY_10655"; transcript_id "RvY_10655.1"; annotation "hypothetical protein."; Pfam "[IF4E] Eukaryotic initiation factor 4E"; Scaffold005 rebuild exon 2312572 2312957 . - . gene_id "RvY_10655"; transcript_id "RvY_10655.1"; Scaffold005 rebuild exon 2313230 2313625 . - . gene_id "RvY_10655"; transcript_id "RvY_10655.1"; Scaffold005 rebuild exon 2313724 2315089 . - . gene_id "RvY_10655"; transcript_id "RvY_10655.1"; Scaffold005 rebuild transcript 2317200 2319573 . - . gene_id "RvY_10656"; transcript_id "RvY_10656.1"; annotation "hypothetical protein."; Pfam "[NPDC1] Neural proliferation differentiation control-1 protein (NPDC1)"; Scaffold005 rebuild exon 2317200 2317988 . - . gene_id "RvY_10656"; transcript_id "RvY_10656.1"; Scaffold005 rebuild exon 2318773 2319573 . - . gene_id "RvY_10656"; transcript_id "RvY_10656.1"; Scaffold005 rebuild transcript 2319628 2320245 . - . gene_id "RvY_10657"; transcript_id "RvY_10657.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2319628 2320245 . - . gene_id "RvY_10657"; transcript_id "RvY_10657.1"; Scaffold005 rebuild transcript 2321694 2323787 . + . gene_id "RvY_10658"; transcript_id "RvY_10658.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold005 rebuild exon 2321694 2321979 . + . gene_id "RvY_10658"; transcript_id "RvY_10658.1"; Scaffold005 rebuild exon 2322062 2322390 . + . gene_id "RvY_10658"; transcript_id "RvY_10658.1"; Scaffold005 rebuild exon 2322663 2323226 . + . gene_id "RvY_10658"; transcript_id "RvY_10658.1"; Scaffold005 rebuild exon 2323423 2323581 . + . gene_id "RvY_10658"; transcript_id "RvY_10658.1"; Scaffold005 rebuild exon 2323665 2323787 . + . gene_id "RvY_10658"; transcript_id "RvY_10658.1"; Scaffold005 rebuild transcript 2324252 2325438 . - . gene_id "RvY_10659"; transcript_id "RvY_10659.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2324252 2324421 . - . gene_id "RvY_10659"; transcript_id "RvY_10659.1"; Scaffold005 rebuild exon 2324669 2324874 . - . gene_id "RvY_10659"; transcript_id "RvY_10659.1"; Scaffold005 rebuild exon 2324972 2325034 . - . gene_id "RvY_10659"; transcript_id "RvY_10659.1"; Scaffold005 rebuild exon 2325109 2325243 . - . gene_id "RvY_10659"; transcript_id "RvY_10659.1"; Scaffold005 rebuild exon 2325329 2325438 . - . gene_id "RvY_10659"; transcript_id "RvY_10659.1"; Scaffold005 rebuild transcript 2326146 2326694 . - . gene_id "RvY_10660"; transcript_id "RvY_10660.1"; gene_name "(1)SMAP"; annotation "(1)putative Stromal membrane-associated protein 1(2)hypothetical protein."; Pfam "[ArfGap] Putative GTPase activating protein for Arf"; KO "(1)K12486"; similar_genes "(1)SMAP1_HUMAN(e-value:2.7e-32;bit-score:136.0)"; Scaffold005 rebuild exon 2326146 2326694 . - . gene_id "RvY_10660"; transcript_id "RvY_10660.1"; Scaffold005 rebuild transcript 2326391 2326807 . - . gene_id "RvY_10660"; transcript_id "RvY_10660.2"; gene_name "(1)SMAP"; annotation "(1)putative Stromal membrane-associated protein 1(2)hypothetical protein."; Pfam "[ArfGap] Putative GTPase activating protein for Arf"; KO "(1)K12486"; similar_genes "(1)SMAP1_HUMAN(e-value:2.7e-32;bit-score:136.0)"; Scaffold005 rebuild exon 2326391 2326807 . - . gene_id "RvY_10660"; transcript_id "RvY_10660.2"; Scaffold005 rebuild transcript 2327392 2334041 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; gene_name "TIMELESS"; annotation "timeless"; Pfam "[TIMELESS_C] Timeless protein C terminal region|[TIMELESS] Timeless protein"; KO "K03155"; similar_genes "TIM_MOUSE(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2327392 2327592 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2327835 2327925 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2327992 2328151 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2329483 2329612 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2329691 2329899 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2330159 2330401 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2330476 2330749 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2330934 2331052 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2331110 2331214 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2331296 2331478 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2331544 2331695 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2331793 2331940 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2332041 2332121 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2332179 2332448 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2332598 2332842 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2332895 2333191 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild exon 2333431 2334041 . + . gene_id "RvY_10661"; transcript_id "RvY_10661.1"; Scaffold005 rebuild transcript 2334497 2335865 . - . gene_id "RvY_10662"; transcript_id "RvY_10662.1"; gene_name "PTZ00239"; annotation "Serine/threonine-protein phosphatase PP-X isozyme 2"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "serine/threonine protein phosphatase 2A; Provisional"; EC "EC3.1.3.16"; KO "K15423"; similar_genes "PPX2_ARATH(e-value:7.1e-137;bit-score:484.0)"; Scaffold005 rebuild exon 2334497 2334786 . - . gene_id "RvY_10662"; transcript_id "RvY_10662.1"; Scaffold005 rebuild exon 2334852 2335122 . - . gene_id "RvY_10662"; transcript_id "RvY_10662.1"; Scaffold005 rebuild exon 2335500 2335865 . - . gene_id "RvY_10662"; transcript_id "RvY_10662.1"; Scaffold005 rebuild transcript 2336013 2341461 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; gene_name "MDN1"; annotation "hypothetical protein."; CDD "AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]"; Scaffold005 rebuild exon 2336013 2336087 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2336260 2337046 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2337197 2337428 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2337504 2337718 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2337919 2338178 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2338443 2338843 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2338942 2339076 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2339242 2339439 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2339511 2339747 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2339929 2340138 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2340217 2340323 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2340405 2340635 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2340917 2341119 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild exon 2341309 2341461 . + . gene_id "RvY_10663"; transcript_id "RvY_10663.1"; Scaffold005 rebuild transcript 2342652 2343891 . - . gene_id "RvY_10664"; transcript_id "RvY_10664.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2342652 2342737 . - . gene_id "RvY_10664"; transcript_id "RvY_10664.1"; Scaffold005 rebuild exon 2342802 2342933 . - . gene_id "RvY_10664"; transcript_id "RvY_10664.1"; Scaffold005 rebuild exon 2343007 2343145 . - . gene_id "RvY_10664"; transcript_id "RvY_10664.1"; Scaffold005 rebuild exon 2343351 2343450 . - . gene_id "RvY_10664"; transcript_id "RvY_10664.1"; Scaffold005 rebuild exon 2343530 2343891 . - . gene_id "RvY_10664"; transcript_id "RvY_10664.1"; Scaffold005 rebuild transcript 2343909 2345828 . - . gene_id "RvY_10665"; transcript_id "RvY_10665.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2343909 2344404 . - . gene_id "RvY_10665"; transcript_id "RvY_10665.1"; Scaffold005 rebuild exon 2344672 2344814 . - . gene_id "RvY_10665"; transcript_id "RvY_10665.1"; Scaffold005 rebuild exon 2344904 2345257 . - . gene_id "RvY_10665"; transcript_id "RvY_10665.1"; Scaffold005 rebuild exon 2345441 2345512 . - . gene_id "RvY_10665"; transcript_id "RvY_10665.1"; Scaffold005 rebuild exon 2345619 2345828 . - . gene_id "RvY_10665"; transcript_id "RvY_10665.1"; Scaffold005 rebuild transcript 2346364 2347782 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2346364 2346520 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; Scaffold005 rebuild exon 2346603 2346814 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; Scaffold005 rebuild exon 2346881 2347064 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; Scaffold005 rebuild exon 2347136 2347220 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; Scaffold005 rebuild exon 2347283 2347374 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; Scaffold005 rebuild exon 2347436 2347782 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.1"; Scaffold005 rebuild transcript 2346572 2347782 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2346572 2346814 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.2"; Scaffold005 rebuild exon 2346881 2347064 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.2"; Scaffold005 rebuild exon 2347136 2347220 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.2"; Scaffold005 rebuild exon 2347283 2347374 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.2"; Scaffold005 rebuild exon 2347436 2347782 . - . gene_id "RvY_10666"; transcript_id "RvY_10666.2"; Scaffold005 rebuild transcript 2347816 2348426 . - . gene_id "RvY_10667"; transcript_id "RvY_10667.1"; gene_name "RPA12"; annotation "DNA-directed RNA polymerase I subunit A12 [EC:2.7.7.6]"; Pfam "[TFIIS_C] Transcription factor S-II (TFIIS)|[zf-ribbon_3] zinc-ribbon domain|[DZR] Double zinc ribbon"; CDD "DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]"; EC "EC2.7.7.6"; KO "K03000"; similar_genes "RPA12_RAT(e-value:6.0e-11;bit-score:65.0)"; Scaffold005 rebuild exon 2347816 2347840 . - . gene_id "RvY_10667"; transcript_id "RvY_10667.1"; Scaffold005 rebuild exon 2348030 2348249 . - . gene_id "RvY_10667"; transcript_id "RvY_10667.1"; Scaffold005 rebuild exon 2348312 2348426 . - . gene_id "RvY_10667"; transcript_id "RvY_10667.1"; Scaffold005 rebuild transcript 2348996 2350523 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; gene_name "eIF-2A"; annotation "Eukaryotic translation initiation factor 2 subunit 1"; Pfam "[S1] S1 RNA binding domain|[EIF_2_alpha] Eukaryotic translation initiation factor 2 alpha subunit"; CDD "eukaryotic translation initiation factor 2 alpha subunit; Provisional"; KO "K03237"; similar_genes "IF2A_HUMAN(e-value:1.1e-58;bit-score:224.0)"; Scaffold005 rebuild exon 2348996 2349122 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild exon 2349178 2349288 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild exon 2349344 2349423 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild exon 2349483 2349631 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild exon 2349811 2349917 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild exon 2350035 2350276 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild exon 2350341 2350523 . + . gene_id "RvY_10668"; transcript_id "RvY_10668.1"; Scaffold005 rebuild transcript 2350772 2351844 . - . gene_id "RvY_10669"; transcript_id "RvY_10669.1"; gene_name "MSC"; annotation "musculin (activated B-cell factor-1)"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09072"; similar_genes "TCF21_XENTR(e-value:2.1e-17;bit-score:87.0)"; Scaffold005 rebuild exon 2350772 2350912 . - . gene_id "RvY_10669"; transcript_id "RvY_10669.1"; Scaffold005 rebuild exon 2351001 2351115 . - . gene_id "RvY_10669"; transcript_id "RvY_10669.1"; Scaffold005 rebuild exon 2351678 2351844 . - . gene_id "RvY_10669"; transcript_id "RvY_10669.1"; Scaffold005 rebuild transcript 2355302 2356767 . + . gene_id "RvY_10670"; transcript_id "RvY_10670.1"; gene_name "DHDH"; annotation "putative Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase"; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; EC "EC1.1.1.179|EC1.3.1.20"; KO "K00078"; similar_genes "DHDH_XENTR(e-value:6.1e-30;bit-score:129.0)"; Scaffold005 rebuild exon 2355302 2355517 . + . gene_id "RvY_10670"; transcript_id "RvY_10670.1"; Scaffold005 rebuild exon 2355595 2355870 . + . gene_id "RvY_10670"; transcript_id "RvY_10670.1"; Scaffold005 rebuild exon 2355980 2356232 . + . gene_id "RvY_10670"; transcript_id "RvY_10670.1"; Scaffold005 rebuild exon 2356325 2356767 . + . gene_id "RvY_10670"; transcript_id "RvY_10670.1"; Scaffold005 rebuild transcript 2358215 2372626 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; gene_name "PDE"; annotation "3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]"; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K01120"; similar_genes "PDE7A_RAT(e-value:1.0e-23;bit-score:108.0)"; Scaffold005 rebuild exon 2358215 2358279 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2358348 2358457 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2358530 2358890 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2359545 2360047 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2360180 2360635 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2360958 2361504 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2362457 2362744 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2367114 2367233 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2368959 2369025 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild exon 2372423 2372626 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.1"; Scaffold005 rebuild transcript 2358215 2363672 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; gene_name "PDE"; annotation "3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]"; Pfam "[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; CDD "3'5'-cyclic nucleotide phosphodiesterase."; EC "EC3.1.4.17"; KO "K01120"; similar_genes "PDE7A_RAT(e-value:1.0e-23;bit-score:108.0)"; Scaffold005 rebuild exon 2358215 2358279 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2358348 2358457 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2358530 2358890 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2359545 2360047 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2360180 2360635 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2360958 2361504 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2362457 2362744 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild exon 2363627 2363672 . - . gene_id "RvY_10671"; transcript_id "RvY_10671.2"; Scaffold005 rebuild transcript 2364520 2364798 . + . gene_id "RvY_10672"; transcript_id "RvY_10672.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2364520 2364798 . + . gene_id "RvY_10672"; transcript_id "RvY_10672.1"; Scaffold005 rebuild transcript 2372644 2373921 . + . gene_id "RvY_10673"; transcript_id "RvY_10673.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2372644 2372745 . + . gene_id "RvY_10673"; transcript_id "RvY_10673.1"; Scaffold005 rebuild exon 2373709 2373921 . + . gene_id "RvY_10673"; transcript_id "RvY_10673.1"; Scaffold005 rebuild transcript 2377134 2377853 . + . gene_id "RvY_10674"; transcript_id "RvY_10674.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2377134 2377853 . + . gene_id "RvY_10674"; transcript_id "RvY_10674.1"; Scaffold005 rebuild transcript 2378353 2381502 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; annotation "hypothetical protein."; similar_genes "CABL2_HUMAN(e-value:8.7e-06;bit-score:48.0)"; Scaffold005 rebuild exon 2378353 2378939 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild exon 2379124 2379441 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild exon 2379550 2379645 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild exon 2379819 2380542 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild exon 2380630 2380776 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild exon 2380919 2381089 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild exon 2381167 2381502 . + . gene_id "RvY_10675"; transcript_id "RvY_10675.1"; Scaffold005 rebuild transcript 2382028 2382781 . - . gene_id "RvY_10676"; transcript_id "RvY_10676.1"; gene_name "RPC19"; annotation "DNA-directed RNA polymerase III subunit C19 [EC:2.7.7.6]"; Pfam "[RNA_pol_L_2] RNA polymerase Rpb3/Rpb11 dimerisation domain"; CDD "AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to associate with the RPB3 counterpart, AC40, to form a heterodimer, which stabilizes the association of the two largest subunits of RNAP I and RNAP III."; EC "EC2.7.7.6"; KO "K03020"; Scaffold005 rebuild exon 2382028 2382254 . - . gene_id "RvY_10676"; transcript_id "RvY_10676.1"; Scaffold005 rebuild exon 2382505 2382781 . - . gene_id "RvY_10676"; transcript_id "RvY_10676.1"; Scaffold005 rebuild transcript 2383252 2385535 . + . gene_id "RvY_10677"; transcript_id "RvY_10677.1"; gene_name "TPR"; annotation "putative G-protein-signaling modulator 2"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_7] Tetratricopeptide repeat|[GoLoco] GoLoco motif|[Rapsyn_N] Rapsyn N-terminal myristoylation and linker region|[TPR_8] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; KO "K15837"; similar_genes "GPSM2_HUMAN(e-value:1.6e-32;bit-score:137.0)"; Scaffold005 rebuild exon 2383252 2383683 . + . gene_id "RvY_10677"; transcript_id "RvY_10677.1"; Scaffold005 rebuild exon 2383983 2384640 . + . gene_id "RvY_10677"; transcript_id "RvY_10677.1"; Scaffold005 rebuild exon 2384832 2385535 . + . gene_id "RvY_10677"; transcript_id "RvY_10677.1"; Scaffold005 rebuild transcript 2386216 2400292 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; gene_name "MIB"; annotation "E3 ubiquitin-protein ligase MIB1"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[Ank_4] Ankyrin repeats (many copies)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[ZZ] Zinc finger, ZZ type|[MIB_HERC2] Mib_herc2|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10645"; similar_genes "MIB1_MOUSE(e-value:3.8e-110;bit-score:395.0)"; Scaffold005 rebuild exon 2386216 2386529 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2386704 2386893 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2386997 2387159 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2387244 2387422 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2387608 2387736 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2387805 2388024 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2396820 2396971 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2397034 2397234 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2397760 2397867 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2397969 2398102 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2398299 2398419 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2398498 2398696 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2398773 2398849 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2398936 2399152 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2399243 2399381 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2399447 2399695 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2399940 2400114 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild exon 2400173 2400292 . - . gene_id "RvY_10678"; transcript_id "RvY_10678.1"; Scaffold005 rebuild transcript 2390299 2392013 . + . gene_id "RvY_10679"; transcript_id "RvY_10679.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2390299 2390344 . + . gene_id "RvY_10679"; transcript_id "RvY_10679.1"; Scaffold005 rebuild exon 2391808 2392013 . + . gene_id "RvY_10679"; transcript_id "RvY_10679.1"; Scaffold005 rebuild transcript 2394454 2394663 . + . gene_id "RvY_10680"; transcript_id "RvY_10680.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2394454 2394663 . + . gene_id "RvY_10680"; transcript_id "RvY_10680.1"; Scaffold005 rebuild transcript 2401181 2403639 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; gene_name "HNRNPA1_3"; annotation "putative Heterogeneous nuclear ribonucleoprotein A2 homolog 1"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K12741"; similar_genes "RO21_XENLA(e-value:3.3e-39;bit-score:159.0)"; Scaffold005 rebuild exon 2401181 2401245 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; Scaffold005 rebuild exon 2401299 2402039 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; Scaffold005 rebuild exon 2402282 2402492 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; Scaffold005 rebuild exon 2402575 2402838 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; Scaffold005 rebuild exon 2403117 2403448 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; Scaffold005 rebuild exon 2403579 2403639 . - . gene_id "RvY_10681"; transcript_id "RvY_10681.1"; Scaffold005 rebuild transcript 2404234 2409543 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; gene_name "AUB"; annotation "putative Piwi-like protein 1"; Pfam "[Piwi]|[PAZ]"; CDD "Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; KO "K02156"; similar_genes "PIWL1_HUMAN(e-value:2.7e-28;bit-score:123.0)"; Scaffold005 rebuild exon 2404234 2404411 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2404504 2404596 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2404890 2405137 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2405221 2405339 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2405567 2405647 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2405754 2405861 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2405954 2406076 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2406185 2406323 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2406448 2406692 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2406774 2406888 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2407209 2407405 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2407469 2407555 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2407660 2407724 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2407810 2407928 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2408003 2408183 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2408485 2408550 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2408622 2408832 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2409053 2409200 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2409279 2409391 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild exon 2409537 2409543 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.1"; Scaffold005 rebuild transcript 2404234 2409395 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; gene_name "AUB"; annotation "putative Piwi-like protein 1"; Pfam "[Piwi]|[PAZ]"; CDD "Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing."; KO "K02156"; similar_genes "PIWL1_HUMAN(e-value:2.7e-28;bit-score:123.0)"; Scaffold005 rebuild exon 2404234 2404411 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2404504 2404596 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2404890 2405137 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2405221 2405339 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2405567 2405647 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2405754 2405861 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2405954 2406076 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2406185 2406323 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2406448 2406692 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2406774 2406888 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2407209 2407405 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2407469 2407555 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2407660 2407724 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2407810 2407928 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2408003 2408183 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2408485 2408550 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2408622 2408832 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2409053 2409200 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild exon 2409279 2409395 . + . gene_id "RvY_10682"; transcript_id "RvY_10682.2"; Scaffold005 rebuild transcript 2409828 2410463 . - . gene_id "RvY_10683"; transcript_id "RvY_10683.1"; gene_name "RRM_2"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold005 rebuild exon 2409828 2410463 . - . gene_id "RvY_10683"; transcript_id "RvY_10683.1"; Scaffold005 rebuild transcript 2411120 2412202 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.1"; gene_name "FKBP1"; annotation "putative Peptidyl-prolyl cis-trans isomerase FKBP1A"; Pfam "[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; CDD "FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]"; EC "EC5.2.1.8"; KO "K09568"; similar_genes "FKB1A_BOVIN(e-value:1.7e-42;bit-score:170.0)"; Scaffold005 rebuild exon 2411120 2411208 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.1"; Scaffold005 rebuild exon 2411299 2411361 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.1"; Scaffold005 rebuild exon 2411456 2411545 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.1"; Scaffold005 rebuild exon 2411845 2411892 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.1"; Scaffold005 rebuild exon 2412106 2412202 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.1"; Scaffold005 rebuild transcript 2411120 2412142 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.2"; gene_name "FKBP1"; annotation "putative Peptidyl-prolyl cis-trans isomerase FKBP1A"; Pfam "[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; CDD "FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]"; EC "EC5.2.1.8"; KO "K09568"; similar_genes "FKB1A_BOVIN(e-value:1.7e-42;bit-score:170.0)"; Scaffold005 rebuild exon 2411120 2411208 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.2"; Scaffold005 rebuild exon 2411299 2411361 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.2"; Scaffold005 rebuild exon 2411456 2411545 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.2"; Scaffold005 rebuild exon 2411845 2411892 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.2"; Scaffold005 rebuild exon 2412106 2412142 . - . gene_id "RvY_10684"; transcript_id "RvY_10684.2"; Scaffold005 rebuild transcript 2412717 2413351 . - . gene_id "RvY_10685"; transcript_id "RvY_10685.1"; gene_name "FKBP1"; annotation "putative 12 kDa FK506-binding protein"; Pfam "[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; EC "EC5.2.1.8"; KO "K09568"; similar_genes "FKB12_DROME(e-value:5.8e-41;bit-score:165.0)"; Scaffold005 rebuild exon 2412717 2412845 . - . gene_id "RvY_10685"; transcript_id "RvY_10685.1"; Scaffold005 rebuild exon 2412905 2413017 . - . gene_id "RvY_10685"; transcript_id "RvY_10685.1"; Scaffold005 rebuild exon 2413109 2413156 . - . gene_id "RvY_10685"; transcript_id "RvY_10685.1"; Scaffold005 rebuild exon 2413222 2413351 . - . gene_id "RvY_10685"; transcript_id "RvY_10685.1"; Scaffold005 rebuild transcript 2415392 2415769 . + . gene_id "RvY_10686"; transcript_id "RvY_10686.1"; gene_name "NEUROD1"; annotation "neurogenic differentiation factor 1"; Pfam "[Neuro_bHLH] Neuronal helix-loop-helix transcription factor|[HLH] Helix-loop-helix DNA-binding domain"; KO "K08033"; similar_genes "NDF6_MOUSE(e-value:4.5e-09;bit-score:59.0)"; Scaffold005 rebuild exon 2415392 2415769 . + . gene_id "RvY_10686"; transcript_id "RvY_10686.1"; Scaffold005 rebuild transcript 2416317 2416562 . - . gene_id "RvY_10687"; transcript_id "RvY_10687.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2416317 2416562 . - . gene_id "RvY_10687"; transcript_id "RvY_10687.1"; Scaffold005 rebuild transcript 2417148 2419506 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold005 rebuild exon 2417148 2417273 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2417350 2417443 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2417720 2417794 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2417875 2418167 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2418228 2418577 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2418857 2419022 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2419087 2419182 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2419245 2419301 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild exon 2419387 2419506 . - . gene_id "RvY_10688"; transcript_id "RvY_10688.1"; Scaffold005 rebuild transcript 2420079 2421039 . + . gene_id "RvY_10689"; transcript_id "RvY_10689.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2420079 2420152 . + . gene_id "RvY_10689"; transcript_id "RvY_10689.1"; Scaffold005 rebuild exon 2420355 2421039 . + . gene_id "RvY_10689"; transcript_id "RvY_10689.1"; Scaffold005 rebuild transcript 2421275 2422506 . + . gene_id "RvY_10690"; transcript_id "RvY_10690.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2421275 2421430 . + . gene_id "RvY_10690"; transcript_id "RvY_10690.1"; Scaffold005 rebuild exon 2422303 2422506 . + . gene_id "RvY_10690"; transcript_id "RvY_10690.1"; Scaffold005 rebuild transcript 2426238 2426768 . + . gene_id "RvY_10691"; transcript_id "RvY_10691.1"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold005 rebuild exon 2426238 2426582 . + . gene_id "RvY_10691"; transcript_id "RvY_10691.1"; Scaffold005 rebuild exon 2426649 2426768 . + . gene_id "RvY_10691"; transcript_id "RvY_10691.1"; Scaffold005 rebuild transcript 2427271 2427627 . - . gene_id "RvY_10692"; transcript_id "RvY_10692.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2427271 2427627 . - . gene_id "RvY_10692"; transcript_id "RvY_10692.1"; Scaffold005 rebuild transcript 2428552 2439025 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; annotation "hypothetical protein."; Pfam "[FYVE] FYVE zinc finger"; Scaffold005 rebuild exon 2428552 2428722 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2429164 2429793 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2430196 2430393 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2430470 2430947 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2431462 2432153 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2432492 2433109 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2433337 2433627 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2433701 2433999 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2434075 2434388 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2434675 2434913 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2435088 2435783 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2436052 2436934 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2437322 2438379 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2438449 2438646 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild exon 2438819 2439025 . - . gene_id "RvY_10693"; transcript_id "RvY_10693.1"; Scaffold005 rebuild transcript 2439608 2439769 . + . gene_id "RvY_10694"; transcript_id "RvY_10694.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2439608 2439769 . + . gene_id "RvY_10694"; transcript_id "RvY_10694.1"; Scaffold005 rebuild transcript 2439770 2443992 . + . gene_id "RvY_10695"; transcript_id "RvY_10695.1"; gene_name "COG5078"; annotation "hypothetical protein."; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]"; Scaffold005 rebuild exon 2439770 2440373 . + . gene_id "RvY_10695"; transcript_id "RvY_10695.1"; Scaffold005 rebuild exon 2440735 2441335 . + . gene_id "RvY_10695"; transcript_id "RvY_10695.1"; Scaffold005 rebuild exon 2441523 2441757 . + . gene_id "RvY_10695"; transcript_id "RvY_10695.1"; Scaffold005 rebuild exon 2443483 2443992 . + . gene_id "RvY_10695"; transcript_id "RvY_10695.1"; Scaffold005 rebuild transcript 2442292 2442648 . - . gene_id "RvY_10696"; transcript_id "RvY_10696.1"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold005 rebuild exon 2442292 2442648 . - . gene_id "RvY_10696"; transcript_id "RvY_10696.1"; Scaffold005 rebuild transcript 2443007 2443159 . - . gene_id "RvY_10697"; transcript_id "RvY_10697.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2443007 2443159 . - . gene_id "RvY_10697"; transcript_id "RvY_10697.1"; Scaffold005 rebuild transcript 2445509 2445760 . + . gene_id "RvY_10698"; transcript_id "RvY_10698.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2445509 2445760 . + . gene_id "RvY_10698"; transcript_id "RvY_10698.1"; Scaffold005 rebuild transcript 2445666 2448271 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.1"; annotation "hypothetical protein."; Pfam "[Sushi] Sushi domain (SCR repeat)"; Scaffold005 rebuild exon 2445666 2445894 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.1"; Scaffold005 rebuild exon 2446180 2446279 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.1"; Scaffold005 rebuild exon 2446382 2446603 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.1"; Scaffold005 rebuild exon 2446688 2448111 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.1"; Scaffold005 rebuild exon 2448180 2448271 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.1"; Scaffold005 rebuild transcript 2445666 2448044 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.2"; annotation "hypothetical protein."; Pfam "[Sushi] Sushi domain (SCR repeat)"; Scaffold005 rebuild exon 2445666 2445894 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.2"; Scaffold005 rebuild exon 2446180 2446279 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.2"; Scaffold005 rebuild exon 2446382 2446603 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.2"; Scaffold005 rebuild exon 2446688 2448044 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.2"; Scaffold005 rebuild transcript 2446638 2448044 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.3"; annotation "hypothetical protein."; Pfam "[Sushi] Sushi domain (SCR repeat)"; Scaffold005 rebuild exon 2446638 2448044 . - . gene_id "RvY_10699"; transcript_id "RvY_10699.3"; Scaffold005 rebuild transcript 2449008 2450155 . - . gene_id "RvY_10700"; transcript_id "RvY_10700.1"; gene_name "CCP"; annotation "hypothetical protein."; CDD "Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII."; Scaffold005 rebuild exon 2449008 2449165 . - . gene_id "RvY_10700"; transcript_id "RvY_10700.1"; Scaffold005 rebuild exon 2449271 2449369 . - . gene_id "RvY_10700"; transcript_id "RvY_10700.1"; Scaffold005 rebuild exon 2449461 2449652 . - . gene_id "RvY_10700"; transcript_id "RvY_10700.1"; Scaffold005 rebuild exon 2449807 2450155 . - . gene_id "RvY_10700"; transcript_id "RvY_10700.1"; Scaffold005 rebuild transcript 2455982 2456809 . + . gene_id "RvY_10701"; transcript_id "RvY_10701.1"; gene_name "PAS"; annotation "hypothetical protein."; Pfam "[PAS_3] PAS fold"; CDD "PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction."; Scaffold005 rebuild exon 2455982 2456809 . + . gene_id "RvY_10701"; transcript_id "RvY_10701.1"; Scaffold005 rebuild transcript 2459789 2465917 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2459789 2460707 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; Scaffold005 rebuild exon 2460953 2461512 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; Scaffold005 rebuild exon 2461990 2462952 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; Scaffold005 rebuild exon 2463354 2463761 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; Scaffold005 rebuild exon 2464281 2465147 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; Scaffold005 rebuild exon 2465327 2465917 . + . gene_id "RvY_10702"; transcript_id "RvY_10702.1"; Scaffold005 rebuild transcript 2468218 2471928 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; gene_name "LMNA"; annotation "lamin A/C"; Pfam "[GAS] Growth-arrest specific micro-tubule binding|[Filament] Intermediate filament protein|[Myosin_tail_1] Myosin tail"; KO "K12641"; similar_genes "K22E_CANFA(e-value:4.0e-10;bit-score:63.0)"; Scaffold005 rebuild exon 2468218 2468367 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild exon 2468688 2468863 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild exon 2470075 2470207 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild exon 2470291 2470440 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild exon 2470776 2471072 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild exon 2471139 2471359 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild exon 2471601 2471928 . + . gene_id "RvY_10703"; transcript_id "RvY_10703.1"; Scaffold005 rebuild transcript 2472426 2473777 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; gene_name "pdxH"; annotation "putative Pyridoxine-5'-phosphate oxidase"; Pfam "[Pyridox_oxase_2] Pyridoxamine 5'-phosphate oxidase|[PNPOx_C] Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region|[Pyridox_oxidase] Pyridoxamine 5'-phosphate oxidase"; CDD "pyridoxamine 5'-phosphate oxidase; Provisional"; EC "EC1.4.3.5"; KO "K00275"; similar_genes "PNPO_RAT(e-value:2.2e-40;bit-score:163.0)"; Scaffold005 rebuild exon 2472426 2472591 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; Scaffold005 rebuild exon 2472663 2472868 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; Scaffold005 rebuild exon 2472943 2472996 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; Scaffold005 rebuild exon 2473064 2473163 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; Scaffold005 rebuild exon 2473224 2473380 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; Scaffold005 rebuild exon 2473555 2473777 . - . gene_id "RvY_10704"; transcript_id "RvY_10704.1"; Scaffold005 rebuild transcript 2474191 2474883 . + . gene_id "RvY_10705"; transcript_id "RvY_10705.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2474191 2474442 . + . gene_id "RvY_10705"; transcript_id "RvY_10705.1"; Scaffold005 rebuild exon 2474521 2474883 . + . gene_id "RvY_10705"; transcript_id "RvY_10705.1"; Scaffold005 rebuild transcript 2475466 2479783 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; gene_name "NFX1"; annotation "Transcriptional repressor NF-X1"; Pfam "[R3H]"; CDD "R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner."; EC "EC6.3.2.-"; KO "K12236"; similar_genes "NFX1_BOVIN(e-value:1.0e-63;bit-score:241.0)"; Scaffold005 rebuild exon 2475466 2476195 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild exon 2476386 2476547 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild exon 2476634 2476801 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild exon 2476967 2477598 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild exon 2477854 2478394 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild exon 2478688 2478967 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild exon 2479207 2479783 . + . gene_id "RvY_10706"; transcript_id "RvY_10706.1"; Scaffold005 rebuild transcript 2481141 2481437 . - . gene_id "RvY_10707"; transcript_id "RvY_10707.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2481141 2481437 . - . gene_id "RvY_10707"; transcript_id "RvY_10707.1"; Scaffold005 rebuild transcript 2484367 2486948 . + . gene_id "RvY_10708"; transcript_id "RvY_10708.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2484367 2484532 . + . gene_id "RvY_10708"; transcript_id "RvY_10708.1"; Scaffold005 rebuild exon 2485431 2485492 . + . gene_id "RvY_10708"; transcript_id "RvY_10708.1"; Scaffold005 rebuild exon 2485591 2485734 . + . gene_id "RvY_10708"; transcript_id "RvY_10708.1"; Scaffold005 rebuild exon 2485974 2486072 . + . gene_id "RvY_10708"; transcript_id "RvY_10708.1"; Scaffold005 rebuild exon 2486808 2486948 . + . gene_id "RvY_10708"; transcript_id "RvY_10708.1"; Scaffold005 rebuild transcript 2487080 2488450 . - . gene_id "RvY_10709"; transcript_id "RvY_10709.1"; gene_name "SF3B4"; annotation "Splicing factor 3B subunit 4"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "K12831"; similar_genes "SF3B4_HUMAN(e-value:5.8e-111;bit-score:398.0)"; Scaffold005 rebuild exon 2487080 2487592 . - . gene_id "RvY_10709"; transcript_id "RvY_10709.1"; Scaffold005 rebuild exon 2487906 2488034 . - . gene_id "RvY_10709"; transcript_id "RvY_10709.1"; Scaffold005 rebuild exon 2488115 2488260 . - . gene_id "RvY_10709"; transcript_id "RvY_10709.1"; Scaffold005 rebuild exon 2488333 2488450 . - . gene_id "RvY_10709"; transcript_id "RvY_10709.1"; Scaffold005 rebuild transcript 2488851 2494258 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; gene_name "DHX8"; annotation "ATP-dependent RNA helicase DHX8"; Pfam "[S1] S1 RNA binding domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[OB_NTP_bind] Oligonucleotide/oligosaccharide-binding (OB)-fold|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K12818"; similar_genes "DHX8_MOUSE(e-value:0.0e+00;bit-score:1207.0)"; Scaffold005 rebuild exon 2488851 2488944 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2489005 2489606 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2489803 2490191 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2490437 2490779 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2491096 2491506 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2491772 2492063 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2492147 2492574 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2492777 2493044 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2493318 2493656 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild exon 2493840 2494258 . + . gene_id "RvY_10710"; transcript_id "RvY_10710.1"; Scaffold005 rebuild transcript 2495828 2496913 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2495828 2496107 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.1"; Scaffold005 rebuild exon 2496165 2496206 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.1"; Scaffold005 rebuild exon 2496285 2496662 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.1"; Scaffold005 rebuild exon 2496756 2496913 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.1"; Scaffold005 rebuild transcript 2495828 2496694 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2495828 2496107 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.2"; Scaffold005 rebuild exon 2496165 2496206 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.2"; Scaffold005 rebuild exon 2496285 2496694 . + . gene_id "RvY_10711"; transcript_id "RvY_10711.2"; Scaffold005 rebuild transcript 2497086 2500349 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GCY3E_DROME(e-value:6.2e-15;bit-score:79.0)"; Scaffold005 rebuild exon 2497086 2497130 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2497206 2497388 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2497466 2497598 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2497675 2497750 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2497839 2498073 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2498134 2498668 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2498742 2498982 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2499063 2499360 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2499439 2499598 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2499673 2499721 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2499793 2499842 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2499947 2500038 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2500105 2500168 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild exon 2500234 2500349 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.1"; Scaffold005 rebuild transcript 2497512 2500349 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; similar_genes "GCY3E_DROME(e-value:6.2e-15;bit-score:79.0)"; Scaffold005 rebuild exon 2497512 2497744 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2497839 2498073 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2498134 2498668 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2498742 2498982 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2499063 2499360 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2499439 2499598 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2499673 2499721 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2499793 2499842 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2499947 2500038 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2500105 2500168 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild exon 2500234 2500349 . + . gene_id "RvY_10712"; transcript_id "RvY_10712.2"; Scaffold005 rebuild transcript 2502422 2504860 . + . gene_id "RvY_10713"; transcript_id "RvY_10713.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2502422 2502671 . + . gene_id "RvY_10713"; transcript_id "RvY_10713.1"; Scaffold005 rebuild exon 2504841 2504860 . + . gene_id "RvY_10713"; transcript_id "RvY_10713.1"; Scaffold005 rebuild transcript 2504953 2505120 . - . gene_id "RvY_10714"; transcript_id "RvY_10714.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2504953 2505120 . - . gene_id "RvY_10714"; transcript_id "RvY_10714.1"; Scaffold005 rebuild transcript 2506536 2508351 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; gene_name "ACMSD"; annotation "2-amino-3-carboxymuconate-6-semialdehyde decarboxylase"; Pfam "[Amidohydro_2] Amidohydrolase"; EC "EC4.1.1.45"; KO "K03392"; similar_genes "ACMSD_BOVIN(e-value:5.0e-93;bit-score:338.0)"; Scaffold005 rebuild exon 2506536 2506655 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild exon 2506791 2507078 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild exon 2507139 2507215 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild exon 2507470 2507563 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild exon 2507672 2507908 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild exon 2508008 2508214 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild exon 2508265 2508351 . - . gene_id "RvY_10715"; transcript_id "RvY_10715.1"; Scaffold005 rebuild transcript 2509826 2510014 . - . gene_id "RvY_10716"; transcript_id "RvY_10716.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2509826 2510014 . - . gene_id "RvY_10716"; transcript_id "RvY_10716.1"; Scaffold005 rebuild transcript 2510142 2510603 . - . gene_id "RvY_10717"; transcript_id "RvY_10717.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2510142 2510603 . - . gene_id "RvY_10717"; transcript_id "RvY_10717.1"; Scaffold005 rebuild transcript 2510605 2510889 . - . gene_id "RvY_10718"; transcript_id "RvY_10718.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2510605 2510889 . - . gene_id "RvY_10718"; transcript_id "RvY_10718.1"; Scaffold005 rebuild transcript 2510983 2511555 . - . gene_id "RvY_10719"; transcript_id "RvY_10719.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2510983 2511555 . - . gene_id "RvY_10719"; transcript_id "RvY_10719.1"; Scaffold005 rebuild transcript 2519095 2528296 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; gene_name "CLECT"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain|[F5_F8_type_C] F5/8 type C domain|[Sushi] Sushi domain (SCR repeat)"; CDD "C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules."; Scaffold005 rebuild exon 2519095 2519221 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2521435 2521890 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2522471 2522587 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2522917 2523057 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2523495 2523686 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2524520 2524723 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2524828 2525064 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2525505 2525798 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2526278 2526445 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2526533 2526730 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2526971 2527325 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild exon 2527567 2528296 . + . gene_id "RvY_10720"; transcript_id "RvY_10720.1"; Scaffold005 rebuild transcript 2528725 2529369 . + . gene_id "RvY_10721"; transcript_id "RvY_10721.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2528725 2528794 . + . gene_id "RvY_10721"; transcript_id "RvY_10721.1"; Scaffold005 rebuild exon 2528852 2529070 . + . gene_id "RvY_10721"; transcript_id "RvY_10721.1"; Scaffold005 rebuild exon 2529134 2529369 . + . gene_id "RvY_10721"; transcript_id "RvY_10721.1"; Scaffold005 rebuild transcript 2529709 2530023 . - . gene_id "RvY_10722"; transcript_id "RvY_10722.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2529709 2530023 . - . gene_id "RvY_10722"; transcript_id "RvY_10722.1"; Scaffold005 rebuild transcript 2530026 2531534 . - . gene_id "RvY_10723"; transcript_id "RvY_10723.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2530026 2531534 . - . gene_id "RvY_10723"; transcript_id "RvY_10723.1"; Scaffold005 rebuild transcript 2535438 2536025 . - . gene_id "RvY_10724"; transcript_id "RvY_10724.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold005 rebuild exon 2535438 2536025 . - . gene_id "RvY_10724"; transcript_id "RvY_10724.1"; Scaffold005 rebuild transcript 2538144 2540553 . - . gene_id "RvY_10725"; transcript_id "RvY_10725.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2538144 2538682 . - . gene_id "RvY_10725"; transcript_id "RvY_10725.1"; Scaffold005 rebuild exon 2540496 2540553 . - . gene_id "RvY_10725"; transcript_id "RvY_10725.1"; Scaffold005 rebuild transcript 2542029 2543945 . - . gene_id "RvY_10726"; transcript_id "RvY_10726.1"; gene_name "TBP"; annotation "transcription initiation factor TFIID TATA-box-binding protein"; Pfam "[TBP] Transcription factor TFIID (or TATA-binding protein, TBP)"; CDD "TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters."; KO "K03120"; Scaffold005 rebuild exon 2542029 2542273 . - . gene_id "RvY_10726"; transcript_id "RvY_10726.1"; Scaffold005 rebuild exon 2542454 2542548 . - . gene_id "RvY_10726"; transcript_id "RvY_10726.1"; Scaffold005 rebuild exon 2542841 2543008 . - . gene_id "RvY_10726"; transcript_id "RvY_10726.1"; Scaffold005 rebuild exon 2543151 2543233 . - . gene_id "RvY_10726"; transcript_id "RvY_10726.1"; Scaffold005 rebuild exon 2543640 2543945 . - . gene_id "RvY_10726"; transcript_id "RvY_10726.1"; Scaffold005 rebuild transcript 2545576 2546575 . - . gene_id "RvY_10727"; transcript_id "RvY_10727.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2545576 2545780 . - . gene_id "RvY_10727"; transcript_id "RvY_10727.1"; Scaffold005 rebuild exon 2545873 2545910 . - . gene_id "RvY_10727"; transcript_id "RvY_10727.1"; Scaffold005 rebuild exon 2545985 2546123 . - . gene_id "RvY_10727"; transcript_id "RvY_10727.1"; Scaffold005 rebuild exon 2546210 2546439 . - . gene_id "RvY_10727"; transcript_id "RvY_10727.1"; Scaffold005 rebuild exon 2546522 2546575 . - . gene_id "RvY_10727"; transcript_id "RvY_10727.1"; Scaffold005 rebuild transcript 2547429 2547635 . + . gene_id "RvY_10728"; transcript_id "RvY_10728.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2547429 2547635 . + . gene_id "RvY_10728"; transcript_id "RvY_10728.1"; Scaffold005 rebuild transcript 2548378 2548944 . - . gene_id "RvY_10729"; transcript_id "RvY_10729.1"; gene_name "BHLHB4_5"; annotation "class B basic helix-loop-helix protein 4/5"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; KO "K09086"; similar_genes "BHE22_HUMAN(e-value:1.9e-20;bit-score:97.0)"; Scaffold005 rebuild exon 2548378 2548944 . - . gene_id "RvY_10729"; transcript_id "RvY_10729.1"; Scaffold005 rebuild transcript 2552573 2553917 . - . gene_id "RvY_10730"; transcript_id "RvY_10730.1"; annotation "hypothetical protein."; Pfam "[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif|[Rtf2] Replication termination factor 2"; similar_genes "CT043_RAT(e-value:3.7e-17;bit-score:86.0)"; Scaffold005 rebuild exon 2552573 2552977 . - . gene_id "RvY_10730"; transcript_id "RvY_10730.1"; Scaffold005 rebuild exon 2553206 2553412 . - . gene_id "RvY_10730"; transcript_id "RvY_10730.1"; Scaffold005 rebuild exon 2553547 2553726 . - . gene_id "RvY_10730"; transcript_id "RvY_10730.1"; Scaffold005 rebuild exon 2553849 2553917 . - . gene_id "RvY_10730"; transcript_id "RvY_10730.1"; Scaffold005 rebuild transcript 2554545 2558428 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; gene_name "RhoGAP_MgcRacGAP"; annotation "hypothetical protein."; Pfam "[RhoGAP]"; CDD "RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold005 rebuild exon 2554545 2554674 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2554741 2554891 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2554958 2555152 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2555232 2555430 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2555495 2555699 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2556004 2556356 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2556628 2556831 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2556905 2557016 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2557084 2557177 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2557588 2557892 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2558119 2558212 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild exon 2558362 2558428 . + . gene_id "RvY_10731"; transcript_id "RvY_10731.1"; Scaffold005 rebuild transcript 2559272 2562059 . + . gene_id "RvY_10732"; transcript_id "RvY_10732.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2559272 2559332 . + . gene_id "RvY_10732"; transcript_id "RvY_10732.1"; Scaffold005 rebuild exon 2560298 2560449 . + . gene_id "RvY_10732"; transcript_id "RvY_10732.1"; Scaffold005 rebuild exon 2560863 2561385 . + . gene_id "RvY_10732"; transcript_id "RvY_10732.1"; Scaffold005 rebuild exon 2561680 2562059 . + . gene_id "RvY_10732"; transcript_id "RvY_10732.1"; Scaffold005 rebuild transcript 2564172 2564819 . - . gene_id "RvY_10733"; transcript_id "RvY_10733.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2564172 2564544 . - . gene_id "RvY_10733"; transcript_id "RvY_10733.1"; Scaffold005 rebuild exon 2564701 2564819 . - . gene_id "RvY_10733"; transcript_id "RvY_10733.1"; Scaffold005 rebuild transcript 2569050 2569385 . + . gene_id "RvY_10734"; transcript_id "RvY_10734.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2569050 2569385 . + . gene_id "RvY_10734"; transcript_id "RvY_10734.1"; Scaffold005 rebuild transcript 2570635 2572462 . + . gene_id "RvY_10735"; transcript_id "RvY_10735.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 2570635 2571038 . + . gene_id "RvY_10735"; transcript_id "RvY_10735.1"; Scaffold005 rebuild exon 2571125 2571259 . + . gene_id "RvY_10735"; transcript_id "RvY_10735.1"; Scaffold005 rebuild exon 2571521 2571758 . + . gene_id "RvY_10735"; transcript_id "RvY_10735.1"; Scaffold005 rebuild exon 2571845 2572462 . + . gene_id "RvY_10735"; transcript_id "RvY_10735.1"; Scaffold005 rebuild transcript 2574467 2574837 . + . gene_id "RvY_10736"; transcript_id "RvY_10736.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2574467 2574644 . + . gene_id "RvY_10736"; transcript_id "RvY_10736.1"; Scaffold005 rebuild exon 2574704 2574837 . + . gene_id "RvY_10736"; transcript_id "RvY_10736.1"; Scaffold005 rebuild transcript 2577516 2579435 . - . gene_id "RvY_10737"; transcript_id "RvY_10737.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold005 rebuild exon 2577516 2577617 . - . gene_id "RvY_10737"; transcript_id "RvY_10737.1"; Scaffold005 rebuild exon 2579121 2579435 . - . gene_id "RvY_10737"; transcript_id "RvY_10737.1"; Scaffold005 rebuild transcript 2578911 2579258 . - . gene_id "RvY_10737"; transcript_id "RvY_10737.2"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold005 rebuild exon 2578911 2579258 . - . gene_id "RvY_10737"; transcript_id "RvY_10737.2"; Scaffold005 rebuild transcript 2585691 2585975 . - . gene_id "RvY_10738"; transcript_id "RvY_10738.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2585691 2585975 . - . gene_id "RvY_10738"; transcript_id "RvY_10738.1"; Scaffold005 rebuild transcript 2590587 2595839 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; gene_name "GRIN3A"; annotation "glutamate receptor, ionotropic, N-methyl-D-aspartate 3A"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05213"; Scaffold005 rebuild exon 2590587 2590991 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2591398 2591580 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2592056 2592522 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2592605 2592807 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2592896 2593651 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2593724 2593842 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2593920 2593993 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2594095 2594166 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2594276 2594807 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2594877 2595255 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild exon 2595406 2595839 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.1"; Scaffold005 rebuild transcript 2592859 2595839 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; gene_name "GRIN3A"; annotation "glutamate receptor, ionotropic, N-methyl-D-aspartate 3A"; Pfam "(1)[ANF_receptor] Receptor family ligand binding region|[Lig_chan] Ligand-gated ion channel|[Lig_chan-Glu_bd] Ligated ion channel L-glutamate- and glycine-binding site|[SBP_bac_3] Bacterial extracellular solute-binding proteins, family 3"; KO "K05213"; Scaffold005 rebuild exon 2592859 2593440 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2593513 2593651 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2593724 2593842 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2593920 2593993 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2594095 2594166 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2594276 2594807 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2594877 2595255 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild exon 2595406 2595839 . + . gene_id "RvY_10739"; transcript_id "RvY_10739.2"; Scaffold005 rebuild transcript 2604889 2606780 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold005 rebuild exon 2604889 2605150 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; Scaffold005 rebuild exon 2605255 2605484 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; Scaffold005 rebuild exon 2605571 2605786 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; Scaffold005 rebuild exon 2606073 2606408 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; Scaffold005 rebuild exon 2606510 2606562 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; Scaffold005 rebuild exon 2606633 2606780 . - . gene_id "RvY_10740"; transcript_id "RvY_10740.1"; Scaffold005 rebuild transcript 2606825 2607244 . + . gene_id "RvY_10741"; transcript_id "RvY_10741.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2606825 2607244 . + . gene_id "RvY_10741"; transcript_id "RvY_10741.1"; Scaffold005 rebuild transcript 2607647 2609040 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; annotation "Leucine-rich repeat-containing protein 6"; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; similar_genes "LRRC6_MOUSE(e-value:1.5e-54;bit-score:210.0)"; Scaffold005 rebuild exon 2607647 2607656 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; Scaffold005 rebuild exon 2607717 2607810 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; Scaffold005 rebuild exon 2608000 2608073 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; Scaffold005 rebuild exon 2608159 2608333 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; Scaffold005 rebuild exon 2608397 2608472 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; Scaffold005 rebuild exon 2608840 2609040 . + . gene_id "RvY_10742"; transcript_id "RvY_10742.1"; Scaffold005 rebuild transcript 2609042 2609377 . + . gene_id "RvY_10743"; transcript_id "RvY_10743.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2609042 2609377 . + . gene_id "RvY_10743"; transcript_id "RvY_10743.1"; Scaffold005 rebuild transcript 2609670 2610547 . - . gene_id "RvY_10744"; transcript_id "RvY_10744.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2609670 2609942 . - . gene_id "RvY_10744"; transcript_id "RvY_10744.1"; Scaffold005 rebuild exon 2610082 2610384 . - . gene_id "RvY_10744"; transcript_id "RvY_10744.1"; Scaffold005 rebuild exon 2610479 2610547 . - . gene_id "RvY_10744"; transcript_id "RvY_10744.1"; Scaffold005 rebuild transcript 2611270 2636959 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; gene_name "SAC6"; annotation "putative Bullous pemphigoid antigen 1, isoforms 1/2/3/4/5/8"; Pfam "[efhand] EF hand|[Spectrin] Spectrin repeat|[CAMSAP_CH] CAMSAP CH domain|[EF_hand_3] EF hand|[CH] Calponin homology (CH) domain|[GAS2] Growth-Arrest-Specific Protein 2 Domain|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; CDD "Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]"; similar_genes "BPA1_HUMAN(e-value:2.0e-45;bit-score:180.0)"; Scaffold005 rebuild exon 2611270 2611378 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2617136 2617197 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2618399 2618488 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2618684 2618761 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2619064 2619156 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2622578 2622771 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2622844 2622959 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2623096 2623190 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2623584 2623703 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2623854 2623949 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2624016 2624240 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2624312 2624478 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2624581 2624881 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2625087 2625579 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2625659 2625849 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2625909 2626214 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2626469 2626840 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2627162 2627518 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2627591 2627764 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2627960 2628382 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2628670 2628933 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2629001 2629265 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2629518 2629975 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2630035 2630463 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2630756 2631130 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2631269 2631580 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2631639 2632139 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2632438 2632792 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2633063 2633357 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2633468 2633627 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2633704 2634150 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2634497 2635000 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2635183 2635300 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2635362 2635591 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2635793 2635910 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2635992 2636164 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild exon 2636528 2636959 . + . gene_id "RvY_10745"; transcript_id "RvY_10745.1"; Scaffold005 rebuild transcript 2612982 2613302 . - . gene_id "RvY_10746"; transcript_id "RvY_10746.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2612982 2613302 . - . gene_id "RvY_10746"; transcript_id "RvY_10746.1"; Scaffold005 rebuild transcript 2638905 2640910 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; gene_name "KLK5"; annotation "kallikrein 5 [EC:3.4.21.-]"; Pfam "[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold005 rebuild exon 2638905 2639369 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild exon 2639446 2639506 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild exon 2639573 2639650 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild exon 2639721 2639944 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild exon 2640042 2640254 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild exon 2640334 2640752 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild exon 2640823 2640910 . + . gene_id "RvY_10747"; transcript_id "RvY_10747.1"; Scaffold005 rebuild transcript 2641648 2641872 . - . gene_id "RvY_10748"; transcript_id "RvY_10748.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2641648 2641872 . - . gene_id "RvY_10748"; transcript_id "RvY_10748.1"; Scaffold005 rebuild transcript 2643218 2644787 . + . gene_id "RvY_10749"; transcript_id "RvY_10749.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; EC "EC2.4.1.115"; similar_genes "UFOG_SOLME(e-value:2.2e-06;bit-score:50.0)"; Scaffold005 rebuild exon 2643218 2644060 . + . gene_id "RvY_10749"; transcript_id "RvY_10749.1"; Scaffold005 rebuild exon 2644194 2644787 . + . gene_id "RvY_10749"; transcript_id "RvY_10749.1"; Scaffold005 rebuild transcript 2645369 2647437 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; Scaffold005 rebuild exon 2645369 2645469 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; Scaffold005 rebuild exon 2645670 2645765 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; Scaffold005 rebuild exon 2646102 2646261 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; Scaffold005 rebuild exon 2646523 2646820 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; Scaffold005 rebuild exon 2646999 2647131 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; Scaffold005 rebuild exon 2647230 2647437 . - . gene_id "RvY_10750"; transcript_id "RvY_10750.1"; Scaffold005 rebuild transcript 2647683 2648009 . - . gene_id "RvY_10751"; transcript_id "RvY_10751.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2647683 2648009 . - . gene_id "RvY_10751"; transcript_id "RvY_10751.1"; Scaffold005 rebuild transcript 2650031 2652645 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2650031 2650136 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2650197 2650245 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2650328 2650487 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2650555 2650852 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2650929 2651169 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2651255 2651600 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2651715 2651909 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2652005 2652242 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2652338 2652419 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild exon 2652483 2652645 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.1"; Scaffold005 rebuild transcript 2651232 2653356 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2651232 2651600 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; Scaffold005 rebuild exon 2651715 2651909 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; Scaffold005 rebuild exon 2652005 2652242 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; Scaffold005 rebuild exon 2652338 2652726 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; Scaffold005 rebuild exon 2652795 2652964 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; Scaffold005 rebuild exon 2653062 2653356 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.2"; Scaffold005 rebuild transcript 2651232 2653356 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2651232 2651600 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild exon 2651715 2651909 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild exon 2652005 2652242 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild exon 2652338 2652419 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild exon 2652483 2652726 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild exon 2652795 2652964 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild exon 2653062 2653356 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.3"; Scaffold005 rebuild transcript 2650925 2652645 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2650925 2651169 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; Scaffold005 rebuild exon 2651255 2651600 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; Scaffold005 rebuild exon 2651715 2651909 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; Scaffold005 rebuild exon 2652005 2652242 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; Scaffold005 rebuild exon 2652338 2652419 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; Scaffold005 rebuild exon 2652483 2652645 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.4"; Scaffold005 rebuild transcript 2651575 2653630 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2651575 2651600 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2651711 2651909 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2652005 2652242 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2652338 2652419 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2652483 2652726 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2652795 2652964 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2653062 2653350 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild exon 2653619 2653630 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.5"; Scaffold005 rebuild transcript 2651954 2653356 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.6"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2651954 2652242 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.6"; Scaffold005 rebuild exon 2652338 2652726 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.6"; Scaffold005 rebuild exon 2652795 2652964 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.6"; Scaffold005 rebuild exon 2653062 2653356 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.6"; Scaffold005 rebuild transcript 2650315 2651483 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.7"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2650315 2650852 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.7"; Scaffold005 rebuild exon 2650929 2651169 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.7"; Scaffold005 rebuild exon 2651255 2651483 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.7"; Scaffold005 rebuild transcript 2650272 2651483 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.8"; gene_name "(1,8)CYCc(2,3,7)S_TKc(4)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,7,8)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,8)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(2,3)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.(4)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers.(7)Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "(1,8)EC4.6.1.2"; similar_genes "(1)ANPRA_HUMAN(e-value:4.5e-09;bit-score:59.0)(8)GUC2D_RAT(e-value:4.4e-07;bit-score:53.0)"; Scaffold005 rebuild exon 2650272 2650487 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.8"; Scaffold005 rebuild exon 2650555 2650852 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.8"; Scaffold005 rebuild exon 2650929 2651169 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.8"; Scaffold005 rebuild exon 2651255 2651483 . - . gene_id "RvY_10752"; transcript_id "RvY_10752.8"; Scaffold005 rebuild transcript 2651682 2652614 . + . gene_id "RvY_10753"; transcript_id "RvY_10753.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2651682 2651996 . + . gene_id "RvY_10753"; transcript_id "RvY_10753.1"; Scaffold005 rebuild exon 2652540 2652614 . + . gene_id "RvY_10753"; transcript_id "RvY_10753.1"; Scaffold005 rebuild transcript 2655711 2656388 . - . gene_id "RvY_10754"; transcript_id "RvY_10754.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold005 rebuild exon 2655711 2656388 . - . gene_id "RvY_10754"; transcript_id "RvY_10754.1"; Scaffold005 rebuild transcript 2659497 2660222 . - . gene_id "RvY_10755"; transcript_id "RvY_10755.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2659497 2660222 . - . gene_id "RvY_10755"; transcript_id "RvY_10755.1"; Scaffold005 rebuild transcript 2658539 2659537 . - . gene_id "RvY_10755"; transcript_id "RvY_10755.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2658539 2658942 . - . gene_id "RvY_10755"; transcript_id "RvY_10755.2"; Scaffold005 rebuild exon 2659468 2659537 . - . gene_id "RvY_10755"; transcript_id "RvY_10755.2"; Scaffold005 rebuild transcript 2660468 2661418 . - . gene_id "RvY_10756"; transcript_id "RvY_10756.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2660468 2660719 . - . gene_id "RvY_10756"; transcript_id "RvY_10756.1"; Scaffold005 rebuild exon 2660781 2660986 . - . gene_id "RvY_10756"; transcript_id "RvY_10756.1"; Scaffold005 rebuild exon 2661385 2661418 . - . gene_id "RvY_10756"; transcript_id "RvY_10756.1"; Scaffold005 rebuild transcript 2661684 2663051 . - . gene_id "RvY_10757"; transcript_id "RvY_10757.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2661684 2663051 . - . gene_id "RvY_10757"; transcript_id "RvY_10757.1"; Scaffold005 rebuild transcript 2663347 2664177 . - . gene_id "RvY_10758"; transcript_id "RvY_10758.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2663347 2664177 . - . gene_id "RvY_10758"; transcript_id "RvY_10758.1"; Scaffold005 rebuild transcript 2664373 2666553 . - . gene_id "RvY_10759"; transcript_id "RvY_10759.1"; annotation "hypothetical protein."; Pfam "[rve] Integrase core domain"; Scaffold005 rebuild exon 2664373 2666553 . - . gene_id "RvY_10759"; transcript_id "RvY_10759.1"; Scaffold005 rebuild transcript 2666650 2667756 . - . gene_id "RvY_10760"; transcript_id "RvY_10760.1"; gene_name "RT_LTR"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold005 rebuild exon 2666650 2667756 . - . gene_id "RvY_10760"; transcript_id "RvY_10760.1"; Scaffold005 rebuild transcript 2668193 2668594 . - . gene_id "RvY_10761"; transcript_id "RvY_10761.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2668193 2668594 . - . gene_id "RvY_10761"; transcript_id "RvY_10761.1"; Scaffold005 rebuild transcript 2670392 2670847 . + . gene_id "RvY_10762"; transcript_id "RvY_10762.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2670392 2670847 . + . gene_id "RvY_10762"; transcript_id "RvY_10762.1"; Scaffold005 rebuild transcript 2671644 2672462 . - . gene_id "RvY_10763"; transcript_id "RvY_10763.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2671644 2671784 . - . gene_id "RvY_10763"; transcript_id "RvY_10763.1"; Scaffold005 rebuild exon 2672349 2672462 . - . gene_id "RvY_10763"; transcript_id "RvY_10763.1"; Scaffold005 rebuild transcript 2672747 2673076 . - . gene_id "RvY_10764"; transcript_id "RvY_10764.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2672747 2672835 . - . gene_id "RvY_10764"; transcript_id "RvY_10764.1"; Scaffold005 rebuild exon 2672974 2673076 . - . gene_id "RvY_10764"; transcript_id "RvY_10764.1"; Scaffold005 rebuild transcript 2673837 2674340 . + . gene_id "RvY_10765"; transcript_id "RvY_10765.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2673837 2674340 . + . gene_id "RvY_10765"; transcript_id "RvY_10765.1"; Scaffold005 rebuild transcript 2674379 2675017 . + . gene_id "RvY_10766"; transcript_id "RvY_10766.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2674379 2675017 . + . gene_id "RvY_10766"; transcript_id "RvY_10766.1"; Scaffold005 rebuild transcript 2675582 2676933 . + . gene_id "RvY_10767"; transcript_id "RvY_10767.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold005 rebuild exon 2675582 2676670 . + . gene_id "RvY_10767"; transcript_id "RvY_10767.1"; Scaffold005 rebuild exon 2676910 2676933 . + . gene_id "RvY_10767"; transcript_id "RvY_10767.1"; Scaffold005 rebuild transcript 2678788 2679105 . + . gene_id "RvY_10768"; transcript_id "RvY_10768.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2678788 2679105 . + . gene_id "RvY_10768"; transcript_id "RvY_10768.1"; Scaffold005 rebuild transcript 2679532 2679702 . - . gene_id "RvY_10769"; transcript_id "RvY_10769.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2679532 2679702 . - . gene_id "RvY_10769"; transcript_id "RvY_10769.1"; Scaffold005 rebuild transcript 2680823 2681293 . + . gene_id "RvY_10770"; transcript_id "RvY_10770.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2680823 2681293 . + . gene_id "RvY_10770"; transcript_id "RvY_10770.1"; Scaffold005 rebuild transcript 2681444 2682087 . - . gene_id "RvY_10771"; transcript_id "RvY_10771.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2681444 2681483 . - . gene_id "RvY_10771"; transcript_id "RvY_10771.1"; Scaffold005 rebuild exon 2681639 2682087 . - . gene_id "RvY_10771"; transcript_id "RvY_10771.1"; Scaffold005 rebuild transcript 2682534 2683158 . + . gene_id "RvY_10772"; transcript_id "RvY_10772.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2682534 2682731 . + . gene_id "RvY_10772"; transcript_id "RvY_10772.1"; Scaffold005 rebuild exon 2682798 2682871 . + . gene_id "RvY_10772"; transcript_id "RvY_10772.1"; Scaffold005 rebuild exon 2682966 2683047 . + . gene_id "RvY_10772"; transcript_id "RvY_10772.1"; Scaffold005 rebuild exon 2683108 2683158 . + . gene_id "RvY_10772"; transcript_id "RvY_10772.1"; Scaffold005 rebuild transcript 2683506 2686597 . - . gene_id "RvY_10773"; transcript_id "RvY_10773.1"; gene_name "DDX23"; annotation "Probable ATP-dependent RNA helicase DDX23"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "helicase; Provisional"; EC "EC3.6.1.-"; KO "K12858"; similar_genes "DDX23_HUMAN(e-value:5.5e-86;bit-score:315.0)"; Scaffold005 rebuild exon 2683506 2683943 . - . gene_id "RvY_10773"; transcript_id "RvY_10773.1"; Scaffold005 rebuild exon 2684245 2684617 . - . gene_id "RvY_10773"; transcript_id "RvY_10773.1"; Scaffold005 rebuild exon 2684683 2684815 . - . gene_id "RvY_10773"; transcript_id "RvY_10773.1"; Scaffold005 rebuild exon 2684881 2685246 . - . gene_id "RvY_10773"; transcript_id "RvY_10773.1"; Scaffold005 rebuild exon 2685424 2686597 . - . gene_id "RvY_10773"; transcript_id "RvY_10773.1"; Scaffold005 rebuild transcript 2687218 2688865 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; annotation "hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A6_MOUSE(e-value:1.2e-17;bit-score:88.0)"; Scaffold005 rebuild exon 2687218 2687442 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2687514 2687717 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2687814 2687876 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2687942 2687971 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2688049 2688191 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2688258 2688356 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2688432 2688556 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2688630 2688794 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild exon 2688852 2688865 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.1"; Scaffold005 rebuild transcript 2687846 2688865 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; annotation "hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A6_MOUSE(e-value:1.2e-17;bit-score:88.0)"; Scaffold005 rebuild exon 2687846 2687876 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; Scaffold005 rebuild exon 2687942 2688191 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; Scaffold005 rebuild exon 2688258 2688356 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; Scaffold005 rebuild exon 2688432 2688556 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; Scaffold005 rebuild exon 2688630 2688794 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; Scaffold005 rebuild exon 2688852 2688865 . - . gene_id "RvY_10774"; transcript_id "RvY_10774.2"; Scaffold005 rebuild transcript 2688125 2688773 . + . gene_id "RvY_10775"; transcript_id "RvY_10775.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2688125 2688382 . + . gene_id "RvY_10775"; transcript_id "RvY_10775.1"; Scaffold005 rebuild exon 2688660 2688773 . + . gene_id "RvY_10775"; transcript_id "RvY_10775.1"; Scaffold005 rebuild transcript 2689695 2690091 . - . gene_id "RvY_10776"; transcript_id "RvY_10776.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2689695 2689852 . - . gene_id "RvY_10776"; transcript_id "RvY_10776.1"; Scaffold005 rebuild exon 2690070 2690091 . - . gene_id "RvY_10776"; transcript_id "RvY_10776.1"; Scaffold005 rebuild transcript 2690227 2690610 . - . gene_id "RvY_10777"; transcript_id "RvY_10777.1"; annotation "hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; Scaffold005 rebuild exon 2690227 2690427 . - . gene_id "RvY_10777"; transcript_id "RvY_10777.1"; Scaffold005 rebuild exon 2690494 2690610 . - . gene_id "RvY_10777"; transcript_id "RvY_10777.1"; Scaffold005 rebuild transcript 2691050 2691271 . - . gene_id "RvY_10778"; transcript_id "RvY_10778.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2691050 2691271 . - . gene_id "RvY_10778"; transcript_id "RvY_10778.1"; Scaffold005 rebuild transcript 2692030 2692615 . + . gene_id "RvY_10779"; transcript_id "RvY_10779.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2692030 2692325 . + . gene_id "RvY_10779"; transcript_id "RvY_10779.1"; Scaffold005 rebuild exon 2692417 2692615 . + . gene_id "RvY_10779"; transcript_id "RvY_10779.1"; Scaffold005 rebuild transcript 2693521 2694485 . - . gene_id "RvY_10780"; transcript_id "RvY_10780.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2693521 2693808 . - . gene_id "RvY_10780"; transcript_id "RvY_10780.1"; Scaffold005 rebuild exon 2693859 2694485 . - . gene_id "RvY_10780"; transcript_id "RvY_10780.1"; Scaffold005 rebuild transcript 2695655 2696864 . + . gene_id "RvY_10781"; transcript_id "RvY_10781.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2695655 2695969 . + . gene_id "RvY_10781"; transcript_id "RvY_10781.1"; Scaffold005 rebuild exon 2696036 2696115 . + . gene_id "RvY_10781"; transcript_id "RvY_10781.1"; Scaffold005 rebuild exon 2696267 2696317 . + . gene_id "RvY_10781"; transcript_id "RvY_10781.1"; Scaffold005 rebuild exon 2696378 2696513 . + . gene_id "RvY_10781"; transcript_id "RvY_10781.1"; Scaffold005 rebuild exon 2696700 2696864 . + . gene_id "RvY_10781"; transcript_id "RvY_10781.1"; Scaffold005 rebuild transcript 2697138 2698741 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2697138 2697197 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild exon 2697589 2697739 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild exon 2697807 2697952 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild exon 2698018 2698139 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild exon 2698207 2698315 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild exon 2698383 2698529 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild exon 2698604 2698741 . + . gene_id "RvY_10782"; transcript_id "RvY_10782.1"; Scaffold005 rebuild transcript 2699584 2699955 . - . gene_id "RvY_10783"; transcript_id "RvY_10783.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2699584 2699955 . - . gene_id "RvY_10783"; transcript_id "RvY_10783.1"; Scaffold005 rebuild transcript 2701132 2701518 . + . gene_id "RvY_10784"; transcript_id "RvY_10784.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2701132 2701518 . + . gene_id "RvY_10784"; transcript_id "RvY_10784.1"; Scaffold005 rebuild transcript 2701077 2701518 . + . gene_id "RvY_10784"; transcript_id "RvY_10784.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2701077 2701096 . + . gene_id "RvY_10784"; transcript_id "RvY_10784.2"; Scaffold005 rebuild exon 2701215 2701518 . + . gene_id "RvY_10784"; transcript_id "RvY_10784.2"; Scaffold005 rebuild transcript 2701780 2703097 . + . gene_id "RvY_10785"; transcript_id "RvY_10785.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2701780 2701858 . + . gene_id "RvY_10785"; transcript_id "RvY_10785.1"; Scaffold005 rebuild exon 2702790 2703097 . + . gene_id "RvY_10785"; transcript_id "RvY_10785.1"; Scaffold005 rebuild transcript 2703220 2703600 . - . gene_id "RvY_10786"; transcript_id "RvY_10786.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2703220 2703600 . - . gene_id "RvY_10786"; transcript_id "RvY_10786.1"; Scaffold005 rebuild transcript 2703656 2704327 . - . gene_id "RvY_10787"; transcript_id "RvY_10787.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2703656 2703971 . - . gene_id "RvY_10787"; transcript_id "RvY_10787.1"; Scaffold005 rebuild exon 2704062 2704113 . - . gene_id "RvY_10787"; transcript_id "RvY_10787.1"; Scaffold005 rebuild exon 2704189 2704327 . - . gene_id "RvY_10787"; transcript_id "RvY_10787.1"; Scaffold005 rebuild transcript 2704234 2704479 . + . gene_id "RvY_10788"; transcript_id "RvY_10788.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2704234 2704479 . + . gene_id "RvY_10788"; transcript_id "RvY_10788.1"; Scaffold005 rebuild transcript 2705484 2705985 . - . gene_id "RvY_10789"; transcript_id "RvY_10789.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2705484 2705785 . - . gene_id "RvY_10789"; transcript_id "RvY_10789.1"; Scaffold005 rebuild exon 2705913 2705985 . - . gene_id "RvY_10789"; transcript_id "RvY_10789.1"; Scaffold005 rebuild transcript 2706635 2707083 . - . gene_id "RvY_10790"; transcript_id "RvY_10790.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2706635 2706903 . - . gene_id "RvY_10790"; transcript_id "RvY_10790.1"; Scaffold005 rebuild exon 2707014 2707083 . - . gene_id "RvY_10790"; transcript_id "RvY_10790.1"; Scaffold005 rebuild transcript 2708475 2708932 . + . gene_id "RvY_10791"; transcript_id "RvY_10791.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2708475 2708559 . + . gene_id "RvY_10791"; transcript_id "RvY_10791.1"; Scaffold005 rebuild exon 2708631 2708932 . + . gene_id "RvY_10791"; transcript_id "RvY_10791.1"; Scaffold005 rebuild transcript 2709021 2709326 . - . gene_id "RvY_10792"; transcript_id "RvY_10792.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2709021 2709326 . - . gene_id "RvY_10792"; transcript_id "RvY_10792.1"; Scaffold005 rebuild transcript 2710956 2711135 . - . gene_id "RvY_10793"; transcript_id "RvY_10793.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2710956 2711135 . - . gene_id "RvY_10793"; transcript_id "RvY_10793.1"; Scaffold005 rebuild transcript 2711577 2711990 . + . gene_id "RvY_10794"; transcript_id "RvY_10794.1"; gene_name "trxA"; annotation "thioredoxin 1"; Pfam "[AhpC-TSA] AhpC/TSA family|[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_8] Thioredoxin-like|[Thioredoxin]"; CDD "TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an Scaffold005 rebuild exon 2711577 2711813 . + . gene_id "RvY_10794"; transcript_id "RvY_10794.1"; Scaffold005 rebuild exon 2711895 2711990 . + . gene_id "RvY_10794"; transcript_id "RvY_10794.1"; Scaffold005 rebuild transcript 2715082 2715315 . + . gene_id "RvY_10795"; transcript_id "RvY_10795.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold005 rebuild exon 2715082 2715315 . + . gene_id "RvY_10795"; transcript_id "RvY_10795.1"; Scaffold005 rebuild transcript 2715773 2716396 . - . gene_id "RvY_10796"; transcript_id "RvY_10796.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 2715773 2716396 . - . gene_id "RvY_10796"; transcript_id "RvY_10796.1"; Scaffold005 rebuild transcript 2716505 2717283 . - . gene_id "RvY_10797"; transcript_id "RvY_10797.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 2716505 2716979 . - . gene_id "RvY_10797"; transcript_id "RvY_10797.1"; Scaffold005 rebuild exon 2717258 2717283 . - . gene_id "RvY_10797"; transcript_id "RvY_10797.1"; Scaffold005 rebuild transcript 2718484 2719001 . + . gene_id "RvY_10798"; transcript_id "RvY_10798.1"; gene_name "trxA"; annotation "thioredoxin 1"; Pfam "[Thioredoxin_2] Thioredoxin-like domain|[Thioredoxin_8] Thioredoxin-like|[Thioredoxin]"; KO "K03671"; similar_genes "THIO_MACMU(e-value:1.1e-24;bit-score:111.0)"; Scaffold005 rebuild exon 2718484 2718714 . + . gene_id "RvY_10798"; transcript_id "RvY_10798.1"; Scaffold005 rebuild exon 2718906 2719001 . + . gene_id "RvY_10798"; transcript_id "RvY_10798.1"; Scaffold005 rebuild transcript 2719782 2720646 . - . gene_id "RvY_10799"; transcript_id "RvY_10799.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2719782 2719804 . - . gene_id "RvY_10799"; transcript_id "RvY_10799.1"; Scaffold005 rebuild exon 2719872 2720057 . - . gene_id "RvY_10799"; transcript_id "RvY_10799.1"; Scaffold005 rebuild exon 2720258 2720452 . - . gene_id "RvY_10799"; transcript_id "RvY_10799.1"; Scaffold005 rebuild exon 2720580 2720646 . - . gene_id "RvY_10799"; transcript_id "RvY_10799.1"; Scaffold005 rebuild transcript 2721346 2721973 . - . gene_id "RvY_10800"; transcript_id "RvY_10800.1"; gene_name "CY"; annotation "hypothetical protein."; Pfam "[Cystatin]"; CDD "Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains."; KO "K13907"; similar_genes "CYTA_HUMAN(e-value:1.0e-06;bit-score:51.0)"; Scaffold005 rebuild exon 2721346 2721480 . - . gene_id "RvY_10800"; transcript_id "RvY_10800.1"; Scaffold005 rebuild exon 2721666 2721764 . - . gene_id "RvY_10800"; transcript_id "RvY_10800.1"; Scaffold005 rebuild exon 2721839 2721973 . - . gene_id "RvY_10800"; transcript_id "RvY_10800.1"; Scaffold005 rebuild transcript 2722432 2723016 . + . gene_id "RvY_10801"; transcript_id "RvY_10801.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2722432 2723016 . + . gene_id "RvY_10801"; transcript_id "RvY_10801.1"; Scaffold005 rebuild transcript 2722383 2723016 . + . gene_id "RvY_10801"; transcript_id "RvY_10801.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2722383 2722423 . + . gene_id "RvY_10801"; transcript_id "RvY_10801.2"; Scaffold005 rebuild exon 2722527 2723016 . + . gene_id "RvY_10801"; transcript_id "RvY_10801.2"; Scaffold005 rebuild transcript 2724680 2728458 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "putative Uncharacterized peptidase C1-like protein F26E4.3"; Pfam "[Peptidase_C1] Papain family cysteine protease"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold005 rebuild exon 2724680 2725037 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2726185 2726248 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2726442 2726558 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2726891 2727123 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2727267 2727417 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2727519 2727678 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2727752 2727797 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2727939 2728114 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild exon 2728177 2728458 . + . gene_id "RvY_10802"; transcript_id "RvY_10802.1"; Scaffold005 rebuild transcript 2728784 2730017 . - . gene_id "RvY_10803"; transcript_id "RvY_10803.1"; gene_name "crotonase-like"; annotation "putative Enoyl-CoA hydratase domain-containing protein 1"; Pfam "[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in Scaffold005 rebuild exon 2728784 2729112 . - . gene_id "RvY_10803"; transcript_id "RvY_10803.1"; Scaffold005 rebuild exon 2729172 2729645 . - . gene_id "RvY_10803"; transcript_id "RvY_10803.1"; Scaffold005 rebuild exon 2729708 2730017 . - . gene_id "RvY_10803"; transcript_id "RvY_10803.1"; Scaffold005 rebuild transcript 2730530 2733152 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; gene_name "ARIH2"; annotation "putative Protein ariadne-2 homolog"; Pfam "[IBR]"; KO "K11969"; similar_genes "ARI2_HUMAN(e-value:4.2e-35;bit-score:146.0)"; Scaffold005 rebuild exon 2730530 2730819 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2730881 2730944 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2731100 2731244 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2731308 2731429 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2731512 2731621 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2731683 2731800 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2731865 2731961 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2732028 2732200 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2732290 2732433 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2732640 2732708 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild exon 2732919 2733152 . + . gene_id "RvY_10804"; transcript_id "RvY_10804.1"; Scaffold005 rebuild transcript 2733582 2735654 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2733582 2734007 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild exon 2734179 2734370 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild exon 2734447 2734519 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild exon 2734730 2734842 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild exon 2734924 2735048 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild exon 2735164 2735355 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild exon 2735447 2735654 . - . gene_id "RvY_10805"; transcript_id "RvY_10805.1"; Scaffold005 rebuild transcript 2735886 2736131 . - . gene_id "RvY_10806"; transcript_id "RvY_10806.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2735886 2736131 . - . gene_id "RvY_10806"; transcript_id "RvY_10806.1"; Scaffold005 rebuild transcript 2736409 2738203 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2736409 2736435 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild exon 2736556 2736678 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild exon 2736762 2736850 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild exon 2736924 2737310 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild exon 2737412 2737639 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild exon 2737735 2738011 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild exon 2738078 2738203 . - . gene_id "RvY_10807"; transcript_id "RvY_10807.1"; Scaffold005 rebuild transcript 2738776 2741138 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2738776 2738799 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2738878 2739186 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2739259 2739344 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2739755 2740180 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2740282 2740509 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2740604 2740728 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2740824 2740984 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild exon 2741079 2741138 . - . gene_id "RvY_10808"; transcript_id "RvY_10808.1"; Scaffold005 rebuild transcript 2744658 2752169 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold005 rebuild exon 2744658 2745059 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2749087 2749177 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2749895 2749936 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2750106 2750177 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2750512 2750580 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2750710 2750848 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2751143 2751544 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild exon 2751935 2752169 . + . gene_id "RvY_10809"; transcript_id "RvY_10809.1"; Scaffold005 rebuild transcript 2752568 2753317 . - . gene_id "RvY_10810"; transcript_id "RvY_10810.1"; gene_name "APC11"; annotation "anaphase-promoting complex subunit 11"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-rbx1] RING-H2 zinc finger|[zf-RING_2] Ring finger domain|[zf-Apc11] Anaphase-promoting complex subunit 11 RING-H2 finger"; CDD "Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]"; KO "K03358"; Scaffold005 rebuild exon 2752568 2752588 . - . gene_id "RvY_10810"; transcript_id "RvY_10810.1"; Scaffold005 rebuild exon 2752691 2752980 . - . gene_id "RvY_10810"; transcript_id "RvY_10810.1"; Scaffold005 rebuild exon 2753155 2753317 . - . gene_id "RvY_10810"; transcript_id "RvY_10810.1"; Scaffold005 rebuild transcript 2753787 2754724 . + . gene_id "RvY_10811"; transcript_id "RvY_10811.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2753787 2754546 . + . gene_id "RvY_10811"; transcript_id "RvY_10811.1"; Scaffold005 rebuild exon 2754615 2754724 . + . gene_id "RvY_10811"; transcript_id "RvY_10811.1"; Scaffold005 rebuild transcript 2754900 2755418 . + . gene_id "RvY_10812"; transcript_id "RvY_10812.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2754900 2755418 . + . gene_id "RvY_10812"; transcript_id "RvY_10812.1"; Scaffold005 rebuild transcript 2755829 2771634 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; gene_name "LAMA1"; annotation "putative Laminin subunit alpha-2"; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Laminin_II] Laminin Domain II|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_B] Laminin B (Domain IV)|[Laminin_N] Laminin N-terminal (Domain VI)|[Laminin_G_1] Laminin G domain"; CDD "Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins."; KO "K05637"; similar_genes "LAMA2_MOUSE(e-value:5.0e-40;bit-score:162.0)"; Scaffold005 rebuild exon 2755829 2755955 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2757441 2757564 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2757625 2757784 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2758040 2758342 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2758404 2758523 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2758647 2758851 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2759026 2759445 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2759582 2759944 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2760133 2760648 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2760854 2761058 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2761113 2761321 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2761376 2761798 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2761992 2762514 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2763308 2764248 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2764315 2764701 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2764773 2764918 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2764980 2765090 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2765171 2765282 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2765345 2765498 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2765570 2765885 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2766118 2766216 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2766311 2766836 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2767052 2767548 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2767851 2768008 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2768072 2768350 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2768428 2768599 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2768749 2769072 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2769311 2769619 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2769806 2770441 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2770606 2770951 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild exon 2771129 2771634 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.1"; Scaffold005 rebuild transcript 2755829 2771634 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; gene_name "LAMA1"; annotation "putative Laminin subunit alpha-2"; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Laminin_II] Laminin Domain II|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_B] Laminin B (Domain IV)|[Laminin_N] Laminin N-terminal (Domain VI)|[Laminin_G_1] Laminin G domain"; CDD "Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins."; KO "K05637"; similar_genes "LAMA2_MOUSE(e-value:5.0e-40;bit-score:162.0)"; Scaffold005 rebuild exon 2755829 2755955 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2757441 2757564 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2757625 2757784 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2758040 2758342 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2758404 2758523 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2758647 2758851 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2759026 2759445 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2759582 2759944 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2760133 2760648 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2760854 2761058 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2761113 2761321 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2761376 2761798 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2761992 2762514 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2763308 2764248 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2764315 2764701 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2764773 2764918 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2764980 2765090 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2765171 2765282 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2765345 2765498 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2765570 2765885 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2766311 2766836 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2767052 2767548 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2767851 2768008 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2768072 2768350 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2768428 2768599 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2768749 2769072 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2769311 2769619 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2769806 2770441 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2770606 2770951 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild exon 2771129 2771634 . + . gene_id "RvY_10813"; transcript_id "RvY_10813.2"; Scaffold005 rebuild transcript 2771950 2773437 . + . gene_id "RvY_10814"; transcript_id "RvY_10814.1"; gene_name "PcbC"; annotation "hypothetical protein."; Pfam "[DIOX_N] non-haem dioxygenase in morphine synthesis N-terminal|[2OG-FeII_Oxy] 2OG-Fe(II) oxygenase superfamily"; CDD "Isopenicillin N synthase and related dioxygenases [General function prediction only]"; Scaffold005 rebuild exon 2771950 2772084 . + . gene_id "RvY_10814"; transcript_id "RvY_10814.1"; Scaffold005 rebuild exon 2772192 2772319 . + . gene_id "RvY_10814"; transcript_id "RvY_10814.1"; Scaffold005 rebuild exon 2772434 2772497 . + . gene_id "RvY_10814"; transcript_id "RvY_10814.1"; Scaffold005 rebuild exon 2772726 2773142 . + . gene_id "RvY_10814"; transcript_id "RvY_10814.1"; Scaffold005 rebuild exon 2773210 2773437 . + . gene_id "RvY_10814"; transcript_id "RvY_10814.1"; Scaffold005 rebuild transcript 2774516 2775345 . + . gene_id "RvY_10815"; transcript_id "RvY_10815.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2774516 2774566 . + . gene_id "RvY_10815"; transcript_id "RvY_10815.1"; Scaffold005 rebuild exon 2774670 2774824 . + . gene_id "RvY_10815"; transcript_id "RvY_10815.1"; Scaffold005 rebuild exon 2775162 2775345 . + . gene_id "RvY_10815"; transcript_id "RvY_10815.1"; Scaffold005 rebuild transcript 2776618 2777198 . - . gene_id "RvY_10816"; transcript_id "RvY_10816.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2776618 2776898 . - . gene_id "RvY_10816"; transcript_id "RvY_10816.1"; Scaffold005 rebuild exon 2776973 2777198 . - . gene_id "RvY_10816"; transcript_id "RvY_10816.1"; Scaffold005 rebuild transcript 2776650 2782266 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; gene_name "TRIM71"; annotation "tripartite motif-containing protein 71"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)"; KO "K12035"; Scaffold005 rebuild exon 2776650 2776905 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2777090 2777274 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2777400 2777534 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2778258 2778736 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2779164 2779701 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2780017 2780668 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2780730 2780848 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild exon 2782135 2782266 . + . gene_id "RvY_10817"; transcript_id "RvY_10817.1"; Scaffold005 rebuild transcript 2783431 2784789 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; gene_name "RP-L7e"; annotation "60S ribosomal protein L7"; Pfam "[Ribosomal_L30] Ribosomal protein L30p/L7e|[Ribosomal_L30_N] Ribosomal L30 N-terminal domain"; CDD "60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues)."; KO "K02937"; similar_genes "RL7_CAEEL(e-value:1.3e-74;bit-score:277.0)"; Scaffold005 rebuild exon 2783431 2783444 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; Scaffold005 rebuild exon 2783504 2783702 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; Scaffold005 rebuild exon 2783774 2783940 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; Scaffold005 rebuild exon 2784165 2784302 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; Scaffold005 rebuild exon 2784394 2784503 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; Scaffold005 rebuild exon 2784581 2784789 . + . gene_id "RvY_10818"; transcript_id "RvY_10818.1"; Scaffold005 rebuild transcript 2785126 2787057 . - . gene_id "RvY_10819"; transcript_id "RvY_10819.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2785126 2785816 . - . gene_id "RvY_10819"; transcript_id "RvY_10819.1"; Scaffold005 rebuild exon 2786078 2787057 . - . gene_id "RvY_10819"; transcript_id "RvY_10819.1"; Scaffold005 rebuild transcript 2789856 2791658 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor|[Trehalose_recp] Trehalose receptor"; Scaffold005 rebuild exon 2789856 2790029 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.1"; Scaffold005 rebuild exon 2790108 2790266 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.1"; Scaffold005 rebuild exon 2790347 2790910 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.1"; Scaffold005 rebuild exon 2790991 2791319 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.1"; Scaffold005 rebuild exon 2791382 2791658 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.1"; Scaffold005 rebuild transcript 2789856 2791245 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.2"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor|[Trehalose_recp] Trehalose receptor"; Scaffold005 rebuild exon 2789856 2790029 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.2"; Scaffold005 rebuild exon 2790108 2790266 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.2"; Scaffold005 rebuild exon 2790347 2790910 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.2"; Scaffold005 rebuild exon 2790991 2791245 . - . gene_id "RvY_10820"; transcript_id "RvY_10820.2"; Scaffold005 rebuild transcript 2792432 2793385 . - . gene_id "RvY_10821"; transcript_id "RvY_10821.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2792432 2792562 . - . gene_id "RvY_10821"; transcript_id "RvY_10821.1"; Scaffold005 rebuild exon 2793025 2793385 . - . gene_id "RvY_10821"; transcript_id "RvY_10821.1"; Scaffold005 rebuild transcript 2794697 2798536 . - . gene_id "RvY_10822"; transcript_id "RvY_10822.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2794697 2795478 . - . gene_id "RvY_10822"; transcript_id "RvY_10822.1"; Scaffold005 rebuild exon 2795541 2796087 . - . gene_id "RvY_10822"; transcript_id "RvY_10822.1"; Scaffold005 rebuild exon 2796178 2797295 . - . gene_id "RvY_10822"; transcript_id "RvY_10822.1"; Scaffold005 rebuild exon 2797397 2797713 . - . gene_id "RvY_10822"; transcript_id "RvY_10822.1"; Scaffold005 rebuild exon 2797785 2798536 . - . gene_id "RvY_10822"; transcript_id "RvY_10822.1"; Scaffold005 rebuild transcript 2796898 2797086 . + . gene_id "RvY_10823"; transcript_id "RvY_10823.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2796898 2797086 . + . gene_id "RvY_10823"; transcript_id "RvY_10823.1"; Scaffold005 rebuild transcript 2799058 2799401 . - . gene_id "RvY_10824"; transcript_id "RvY_10824.1"; gene_name "COG4221"; annotation "hypothetical protein."; CDD "Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]"; Scaffold005 rebuild exon 2799058 2799264 . - . gene_id "RvY_10824"; transcript_id "RvY_10824.1"; Scaffold005 rebuild exon 2799333 2799401 . - . gene_id "RvY_10824"; transcript_id "RvY_10824.1"; Scaffold005 rebuild transcript 2799952 2800245 . - . gene_id "RvY_10825"; transcript_id "RvY_10825.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2799952 2800245 . - . gene_id "RvY_10825"; transcript_id "RvY_10825.1"; Scaffold005 rebuild transcript 2799974 2800792 . + . gene_id "RvY_10826"; transcript_id "RvY_10826.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2799974 2800338 . + . gene_id "RvY_10826"; transcript_id "RvY_10826.1"; Scaffold005 rebuild exon 2800531 2800792 . + . gene_id "RvY_10826"; transcript_id "RvY_10826.1"; Scaffold005 rebuild transcript 2801517 2802323 . + . gene_id "RvY_10827"; transcript_id "RvY_10827.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2801517 2801621 . + . gene_id "RvY_10827"; transcript_id "RvY_10827.1"; Scaffold005 rebuild exon 2801695 2801790 . + . gene_id "RvY_10827"; transcript_id "RvY_10827.1"; Scaffold005 rebuild exon 2801874 2802323 . + . gene_id "RvY_10827"; transcript_id "RvY_10827.1"; Scaffold005 rebuild transcript 2802564 2812077 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[Clathrin] Region in Clathrin and VPS|[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "OSM1_DROME(e-value:1.6e-13;bit-score:74.0)"; Scaffold005 rebuild exon 2802564 2802905 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2803761 2804138 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2804278 2804635 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2804698 2804989 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2805151 2805349 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2805423 2805603 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2805915 2806073 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2806148 2806404 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2806475 2806613 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2807450 2807637 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2807706 2807857 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2807937 2808053 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2808118 2808596 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2808816 2809189 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2809470 2809985 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2810243 2810500 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2810687 2811116 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2811305 2811381 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2811449 2811557 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2811629 2811741 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2811812 2811955 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild exon 2812027 2812077 . - . gene_id "RvY_10828"; transcript_id "RvY_10828.1"; Scaffold005 rebuild transcript 2812708 2813574 . - . gene_id "RvY_10829"; transcript_id "RvY_10829.1"; gene_name "lipB"; annotation "(1)lipoyl(octanoyl) transferase [EC:2.3.1.181](2)hypothetical protein."; Pfam "[BPL_LplA_LipB] Biotin/lipoate A/B protein ligase family"; CDD "lipoyltransferase; Reviewed"; EC "EC2.3.1.181"; KO "(1)K03801"; similar_genes "LIPB_DROME(e-value:2.2e-23;bit-score:107.0)"; Scaffold005 rebuild exon 2812708 2812966 . - . gene_id "RvY_10829"; transcript_id "RvY_10829.1"; Scaffold005 rebuild exon 2813078 2813574 . - . gene_id "RvY_10829"; transcript_id "RvY_10829.1"; Scaffold005 rebuild transcript 2813074 2813574 . - . gene_id "RvY_10829"; transcript_id "RvY_10829.2"; gene_name "lipB"; annotation "(1)lipoyl(octanoyl) transferase [EC:2.3.1.181](2)hypothetical protein."; Pfam "[BPL_LplA_LipB] Biotin/lipoate A/B protein ligase family"; CDD "lipoyltransferase; Reviewed"; EC "EC2.3.1.181"; KO "(1)K03801"; similar_genes "LIPB_DROME(e-value:2.2e-23;bit-score:107.0)"; Scaffold005 rebuild exon 2813074 2813574 . - . gene_id "RvY_10829"; transcript_id "RvY_10829.2"; Scaffold005 rebuild transcript 2814008 2815999 . - . gene_id "RvY_10830"; transcript_id "RvY_10830.1"; gene_name "mut-7_like_exo"; annotation "hypothetical protein."; Pfam "[DUF82] Protein of unknown function DUF82|[DNA_pol_A_exo1] 3'-5' exonuclease"; CDD "The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the Scaffold005 rebuild exon 2814008 2814418 . - . gene_id "RvY_10830"; transcript_id "RvY_10830.1"; Scaffold005 rebuild exon 2814477 2814776 . - . gene_id "RvY_10830"; transcript_id "RvY_10830.1"; Scaffold005 rebuild exon 2814959 2815999 . - . gene_id "RvY_10830"; transcript_id "RvY_10830.1"; Scaffold005 rebuild transcript 2818768 2819082 . - . gene_id "RvY_10831"; transcript_id "RvY_10831.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2818768 2818931 . - . gene_id "RvY_10831"; transcript_id "RvY_10831.1"; Scaffold005 rebuild exon 2819028 2819082 . - . gene_id "RvY_10831"; transcript_id "RvY_10831.1"; Scaffold005 rebuild transcript 2820753 2821070 . + . gene_id "RvY_10832"; transcript_id "RvY_10832.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2820753 2821070 . + . gene_id "RvY_10832"; transcript_id "RvY_10832.1"; Scaffold005 rebuild transcript 2822671 2824319 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold005 rebuild exon 2822671 2823003 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild exon 2823088 2823158 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild exon 2823228 2823252 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild exon 2823331 2823476 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild exon 2823739 2824028 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild exon 2824086 2824170 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild exon 2824229 2824319 . + . gene_id "RvY_10833"; transcript_id "RvY_10833.1"; Scaffold005 rebuild transcript 2824952 2825353 . + . gene_id "RvY_10834"; transcript_id "RvY_10834.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2824952 2825353 . + . gene_id "RvY_10834"; transcript_id "RvY_10834.1"; Scaffold005 rebuild transcript 2825718 2826775 . + . gene_id "RvY_10835"; transcript_id "RvY_10835.1"; gene_name "MYL12"; annotation "Myosin regulatory light chain sqh"; Pfam "[efhand] EF hand|[UPF0154] Uncharacterised protein family (UPF0154)|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; KO "K12757"; similar_genes "SQH_DROME(e-value:2.9e-74;bit-score:276.0)"; Scaffold005 rebuild exon 2825718 2826018 . + . gene_id "RvY_10835"; transcript_id "RvY_10835.1"; Scaffold005 rebuild exon 2826369 2826530 . + . gene_id "RvY_10835"; transcript_id "RvY_10835.1"; Scaffold005 rebuild exon 2826591 2826775 . + . gene_id "RvY_10835"; transcript_id "RvY_10835.1"; Scaffold005 rebuild transcript 2827666 2830654 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2827666 2827745 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild exon 2828622 2828949 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild exon 2829317 2829616 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild exon 2829676 2829763 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild exon 2829828 2830035 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild exon 2830367 2830485 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild exon 2830545 2830654 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.1"; Scaffold005 rebuild transcript 2827433 2830654 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2827433 2827446 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild exon 2828622 2828949 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild exon 2829317 2829616 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild exon 2829676 2829763 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild exon 2829828 2830035 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild exon 2830367 2830485 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild exon 2830545 2830654 . - . gene_id "RvY_10836"; transcript_id "RvY_10836.2"; Scaffold005 rebuild transcript 2830916 2831580 . + . gene_id "RvY_10837"; transcript_id "RvY_10837.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2830916 2830994 . + . gene_id "RvY_10837"; transcript_id "RvY_10837.1"; Scaffold005 rebuild exon 2831501 2831580 . + . gene_id "RvY_10837"; transcript_id "RvY_10837.1"; Scaffold005 rebuild transcript 2835307 2835896 . - . gene_id "RvY_10838"; transcript_id "RvY_10838.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2835307 2835333 . - . gene_id "RvY_10838"; transcript_id "RvY_10838.1"; Scaffold005 rebuild exon 2835570 2835896 . - . gene_id "RvY_10838"; transcript_id "RvY_10838.1"; Scaffold005 rebuild transcript 2835646 2835987 . + . gene_id "RvY_10839"; transcript_id "RvY_10839.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2835646 2835987 . + . gene_id "RvY_10839"; transcript_id "RvY_10839.1"; Scaffold005 rebuild transcript 2836036 2836600 . + . gene_id "RvY_10840"; transcript_id "RvY_10840.1"; gene_name "AspRS_cyto_N"; annotation "hypothetical protein."; CDD "AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis."; Scaffold005 rebuild exon 2836036 2836243 . + . gene_id "RvY_10840"; transcript_id "RvY_10840.1"; Scaffold005 rebuild exon 2836385 2836529 . + . gene_id "RvY_10840"; transcript_id "RvY_10840.1"; Scaffold005 rebuild exon 2836588 2836600 . + . gene_id "RvY_10840"; transcript_id "RvY_10840.1"; Scaffold005 rebuild transcript 2839426 2843115 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; annotation "hypothetical protein."; Pfam "[RINT1_TIP1] RINT-1 / TIP-1 family"; Scaffold005 rebuild exon 2839426 2839645 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2839717 2839835 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2840018 2840198 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2840279 2840445 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2840532 2840740 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2840954 2841094 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2841173 2841395 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2841460 2841570 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2841839 2841980 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2842055 2842192 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2842260 2842433 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2842622 2842869 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild exon 2842927 2843115 . - . gene_id "RvY_10841"; transcript_id "RvY_10841.1"; Scaffold005 rebuild transcript 2843461 2844451 . + . gene_id "RvY_10842"; transcript_id "RvY_10842.1"; gene_name "RP-S11"; annotation "small subunit ribosomal protein S11"; Pfam "[Ribosomal_S11] Ribosomal protein S11"; CDD "30S ribosomal protein S11; Validated"; KO "K02948"; similar_genes "RT11_BOVIN(e-value:7.9e-11;bit-score:65.0)"; Scaffold005 rebuild exon 2843461 2843520 . + . gene_id "RvY_10842"; transcript_id "RvY_10842.1"; Scaffold005 rebuild exon 2843617 2843738 . + . gene_id "RvY_10842"; transcript_id "RvY_10842.1"; Scaffold005 rebuild exon 2843851 2844010 . + . gene_id "RvY_10842"; transcript_id "RvY_10842.1"; Scaffold005 rebuild exon 2844203 2844451 . + . gene_id "RvY_10842"; transcript_id "RvY_10842.1"; Scaffold005 rebuild transcript 2845240 2845536 . - . gene_id "RvY_10843"; transcript_id "RvY_10843.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2845240 2845536 . - . gene_id "RvY_10843"; transcript_id "RvY_10843.1"; Scaffold005 rebuild transcript 2850209 2850769 . + . gene_id "RvY_10844"; transcript_id "RvY_10844.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 2850209 2850481 . + . gene_id "RvY_10844"; transcript_id "RvY_10844.1"; Scaffold005 rebuild exon 2850560 2850769 . + . gene_id "RvY_10844"; transcript_id "RvY_10844.1"; Scaffold005 rebuild transcript 2851221 2851912 . - . gene_id "RvY_10845"; transcript_id "RvY_10845.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2851221 2851488 . - . gene_id "RvY_10845"; transcript_id "RvY_10845.1"; Scaffold005 rebuild exon 2851716 2851912 . - . gene_id "RvY_10845"; transcript_id "RvY_10845.1"; Scaffold005 rebuild transcript 2852267 2852509 . - . gene_id "RvY_10846"; transcript_id "RvY_10846.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2852267 2852509 . - . gene_id "RvY_10846"; transcript_id "RvY_10846.1"; Scaffold005 rebuild transcript 2853279 2853557 . + . gene_id "RvY_10847"; transcript_id "RvY_10847.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2853279 2853557 . + . gene_id "RvY_10847"; transcript_id "RvY_10847.1"; Scaffold005 rebuild transcript 2853801 2854343 . + . gene_id "RvY_10848"; transcript_id "RvY_10848.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2853801 2854005 . + . gene_id "RvY_10848"; transcript_id "RvY_10848.1"; Scaffold005 rebuild exon 2854075 2854343 . + . gene_id "RvY_10848"; transcript_id "RvY_10848.1"; Scaffold005 rebuild transcript 2854705 2855707 . - . gene_id "RvY_10849"; transcript_id "RvY_10849.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 2854705 2855049 . - . gene_id "RvY_10849"; transcript_id "RvY_10849.1"; Scaffold005 rebuild exon 2855531 2855707 . - . gene_id "RvY_10849"; transcript_id "RvY_10849.1"; Scaffold005 rebuild transcript 2856199 2856486 . + . gene_id "RvY_10850"; transcript_id "RvY_10850.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2856199 2856486 . + . gene_id "RvY_10850"; transcript_id "RvY_10850.1"; Scaffold005 rebuild transcript 2857064 2857246 . - . gene_id "RvY_10851"; transcript_id "RvY_10851.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2857064 2857246 . - . gene_id "RvY_10851"; transcript_id "RvY_10851.1"; Scaffold005 rebuild transcript 2857770 2858018 . - . gene_id "RvY_10852"; transcript_id "RvY_10852.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2857770 2858018 . - . gene_id "RvY_10852"; transcript_id "RvY_10852.1"; Scaffold005 rebuild transcript 2859118 2859684 . - . gene_id "RvY_10853"; transcript_id "RvY_10853.1"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold005 rebuild exon 2859118 2859684 . - . gene_id "RvY_10853"; transcript_id "RvY_10853.1"; Scaffold005 rebuild transcript 2860068 2860742 . - . gene_id "RvY_10854"; transcript_id "RvY_10854.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2860068 2860264 . - . gene_id "RvY_10854"; transcript_id "RvY_10854.1"; Scaffold005 rebuild exon 2860487 2860589 . - . gene_id "RvY_10854"; transcript_id "RvY_10854.1"; Scaffold005 rebuild exon 2860617 2860742 . - . gene_id "RvY_10854"; transcript_id "RvY_10854.1"; Scaffold005 rebuild transcript 2860780 2860986 . - . gene_id "RvY_10855"; transcript_id "RvY_10855.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2860780 2860986 . - . gene_id "RvY_10855"; transcript_id "RvY_10855.1"; Scaffold005 rebuild transcript 2862544 2863002 . + . gene_id "RvY_10856"; transcript_id "RvY_10856.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2862544 2863002 . + . gene_id "RvY_10856"; transcript_id "RvY_10856.1"; Scaffold005 rebuild transcript 2863761 2864735 . + . gene_id "RvY_10857"; transcript_id "RvY_10857.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2863761 2863866 . + . gene_id "RvY_10857"; transcript_id "RvY_10857.1"; Scaffold005 rebuild exon 2863935 2864048 . + . gene_id "RvY_10857"; transcript_id "RvY_10857.1"; Scaffold005 rebuild exon 2864119 2864362 . + . gene_id "RvY_10857"; transcript_id "RvY_10857.1"; Scaffold005 rebuild exon 2864603 2864735 . + . gene_id "RvY_10857"; transcript_id "RvY_10857.1"; Scaffold005 rebuild transcript 2866700 2866888 . - . gene_id "RvY_10858"; transcript_id "RvY_10858.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2866700 2866888 . - . gene_id "RvY_10858"; transcript_id "RvY_10858.1"; Scaffold005 rebuild transcript 2867692 2872435 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2867692 2868101 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2868163 2868785 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2868873 2869168 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2869228 2869562 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2869657 2870105 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2870205 2870624 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2870762 2871033 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2872159 2872280 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild exon 2872354 2872435 . - . gene_id "RvY_10859"; transcript_id "RvY_10859.1"; Scaffold005 rebuild transcript 2874657 2877935 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold005 rebuild exon 2874657 2875023 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2875086 2875253 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2875355 2875501 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2875565 2875942 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2876046 2876204 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2876274 2876504 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2876693 2876824 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2876913 2877004 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2877075 2877114 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2877183 2877353 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2877415 2877564 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2877654 2877752 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild exon 2877853 2877935 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.1"; Scaffold005 rebuild transcript 2874657 2877935 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; annotation "hypothetical protein."; Pfam "[THAP]"; Scaffold005 rebuild exon 2874657 2875023 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2875086 2875253 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2875355 2875501 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2875565 2875942 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2876046 2876204 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2876274 2876504 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2876693 2876824 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2876913 2877004 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2877075 2877114 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2877186 2877353 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2877415 2877564 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2877654 2877752 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild exon 2877853 2877935 . + . gene_id "RvY_10860"; transcript_id "RvY_10860.2"; Scaffold005 rebuild transcript 2880026 2881368 . + . gene_id "RvY_10861"; transcript_id "RvY_10861.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain|[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2880026 2880556 . + . gene_id "RvY_10861"; transcript_id "RvY_10861.1"; Scaffold005 rebuild exon 2880730 2881368 . + . gene_id "RvY_10861"; transcript_id "RvY_10861.1"; Scaffold005 rebuild transcript 2881514 2881870 . - . gene_id "RvY_10862"; transcript_id "RvY_10862.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2881514 2881870 . - . gene_id "RvY_10862"; transcript_id "RvY_10862.1"; Scaffold005 rebuild transcript 2882964 2883329 . - . gene_id "RvY_10863"; transcript_id "RvY_10863.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2882964 2883329 . - . gene_id "RvY_10863"; transcript_id "RvY_10863.1"; Scaffold005 rebuild transcript 2882458 2883031 . - . gene_id "RvY_10863"; transcript_id "RvY_10863.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2882458 2882503 . - . gene_id "RvY_10863"; transcript_id "RvY_10863.2"; Scaffold005 rebuild exon 2882757 2883031 . - . gene_id "RvY_10863"; transcript_id "RvY_10863.2"; Scaffold005 rebuild transcript 2885641 2886732 . - . gene_id "RvY_10864"; transcript_id "RvY_10864.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold005 rebuild exon 2885641 2886732 . - . gene_id "RvY_10864"; transcript_id "RvY_10864.1"; Scaffold005 rebuild transcript 2887684 2891942 . + . gene_id "RvY_10865"; transcript_id "RvY_10865.1"; annotation "hypothetical protein."; Pfam "[GAF_3] GAF domain|[GAF_2] GAF domain|[GAF]|[PDEase_I] 3'5'-cyclic nucleotide phosphodiesterase"; Scaffold005 rebuild exon 2887684 2888790 . + . gene_id "RvY_10865"; transcript_id "RvY_10865.1"; Scaffold005 rebuild exon 2889090 2889829 . + . gene_id "RvY_10865"; transcript_id "RvY_10865.1"; Scaffold005 rebuild exon 2890077 2890917 . + . gene_id "RvY_10865"; transcript_id "RvY_10865.1"; Scaffold005 rebuild exon 2891139 2891333 . + . gene_id "RvY_10865"; transcript_id "RvY_10865.1"; Scaffold005 rebuild exon 2891607 2891942 . + . gene_id "RvY_10865"; transcript_id "RvY_10865.1"; Scaffold005 rebuild transcript 2891993 2893378 . + . gene_id "RvY_10866"; transcript_id "RvY_10866.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2891993 2892724 . + . gene_id "RvY_10866"; transcript_id "RvY_10866.1"; Scaffold005 rebuild exon 2893094 2893378 . + . gene_id "RvY_10866"; transcript_id "RvY_10866.1"; Scaffold005 rebuild transcript 2894354 2895405 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2894354 2894459 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.1"; Scaffold005 rebuild exon 2894540 2894833 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.1"; Scaffold005 rebuild exon 2895167 2895405 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.1"; Scaffold005 rebuild transcript 2894092 2894705 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2894092 2894459 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.2"; Scaffold005 rebuild exon 2894540 2894705 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.2"; Scaffold005 rebuild transcript 2894092 2894463 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2894092 2894463 . + . gene_id "RvY_10867"; transcript_id "RvY_10867.3"; Scaffold005 rebuild transcript 2900154 2901472 . + . gene_id "RvY_10868"; transcript_id "RvY_10868.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2900154 2900532 . + . gene_id "RvY_10868"; transcript_id "RvY_10868.1"; Scaffold005 rebuild exon 2901099 2901472 . + . gene_id "RvY_10868"; transcript_id "RvY_10868.1"; Scaffold005 rebuild transcript 2903051 2908942 . - . gene_id "RvY_10869"; transcript_id "RvY_10869.1"; gene_name "acuC"; annotation "Histone deacetylase 9"; Pfam "[Hist_deacetyl] Histone deacetylase domain"; CDD "histone deacetylase; Provisional"; EC "EC3.5.1.98"; KO "K04768"; similar_genes "HDA9_ARATH(e-value:1.1e-52;bit-score:204.0)"; Scaffold005 rebuild exon 2903051 2903913 . - . gene_id "RvY_10869"; transcript_id "RvY_10869.1"; Scaffold005 rebuild exon 2908534 2908942 . - . gene_id "RvY_10869"; transcript_id "RvY_10869.1"; Scaffold005 rebuild transcript 2914183 2914551 . + . gene_id "RvY_10870"; transcript_id "RvY_10870.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2914183 2914551 . + . gene_id "RvY_10870"; transcript_id "RvY_10870.1"; Scaffold005 rebuild transcript 2914693 2915885 . + . gene_id "RvY_10871"; transcript_id "RvY_10871.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold005 rebuild exon 2914693 2915226 . + . gene_id "RvY_10871"; transcript_id "RvY_10871.1"; Scaffold005 rebuild exon 2915419 2915538 . + . gene_id "RvY_10871"; transcript_id "RvY_10871.1"; Scaffold005 rebuild exon 2915616 2915885 . + . gene_id "RvY_10871"; transcript_id "RvY_10871.1"; Scaffold005 rebuild transcript 2916047 2916244 . - . gene_id "RvY_10872"; transcript_id "RvY_10872.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2916047 2916244 . - . gene_id "RvY_10872"; transcript_id "RvY_10872.1"; Scaffold005 rebuild transcript 2916311 2916835 . + . gene_id "RvY_10873"; transcript_id "RvY_10873.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold005 rebuild exon 2916311 2916835 . + . gene_id "RvY_10873"; transcript_id "RvY_10873.1"; Scaffold005 rebuild transcript 2923460 2924434 . - . gene_id "RvY_10874"; transcript_id "RvY_10874.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2923460 2923506 . - . gene_id "RvY_10874"; transcript_id "RvY_10874.1"; Scaffold005 rebuild exon 2924023 2924190 . - . gene_id "RvY_10874"; transcript_id "RvY_10874.1"; Scaffold005 rebuild exon 2924236 2924434 . - . gene_id "RvY_10874"; transcript_id "RvY_10874.1"; Scaffold005 rebuild transcript 2924729 2924953 . - . gene_id "RvY_10875"; transcript_id "RvY_10875.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 2924729 2924953 . - . gene_id "RvY_10875"; transcript_id "RvY_10875.1"; Scaffold005 rebuild transcript 2924966 2926548 . - . gene_id "RvY_10876"; transcript_id "RvY_10876.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold005 rebuild exon 2924966 2925675 . - . gene_id "RvY_10876"; transcript_id "RvY_10876.1"; Scaffold005 rebuild exon 2926281 2926548 . - . gene_id "RvY_10876"; transcript_id "RvY_10876.1"; Scaffold005 rebuild transcript 2926626 2927011 . + . gene_id "RvY_10877"; transcript_id "RvY_10877.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2926626 2926645 . + . gene_id "RvY_10877"; transcript_id "RvY_10877.1"; Scaffold005 rebuild exon 2926678 2927011 . + . gene_id "RvY_10877"; transcript_id "RvY_10877.1"; Scaffold005 rebuild transcript 2927609 2928385 . + . gene_id "RvY_10878"; transcript_id "RvY_10878.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2927609 2928385 . + . gene_id "RvY_10878"; transcript_id "RvY_10878.1"; Scaffold005 rebuild transcript 2928780 2931565 . - . gene_id "RvY_10879"; transcript_id "RvY_10879.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2928780 2930746 . - . gene_id "RvY_10879"; transcript_id "RvY_10879.1"; Scaffold005 rebuild exon 2931505 2931565 . - . gene_id "RvY_10879"; transcript_id "RvY_10879.1"; Scaffold005 rebuild transcript 2933438 2935779 . - . gene_id "RvY_10880"; transcript_id "RvY_10880.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2933438 2933490 . - . gene_id "RvY_10880"; transcript_id "RvY_10880.1"; Scaffold005 rebuild exon 2933892 2933980 . - . gene_id "RvY_10880"; transcript_id "RvY_10880.1"; Scaffold005 rebuild exon 2934186 2934287 . - . gene_id "RvY_10880"; transcript_id "RvY_10880.1"; Scaffold005 rebuild exon 2934354 2934536 . - . gene_id "RvY_10880"; transcript_id "RvY_10880.1"; Scaffold005 rebuild exon 2935673 2935779 . - . gene_id "RvY_10880"; transcript_id "RvY_10880.1"; Scaffold005 rebuild transcript 2935655 2937277 . + . gene_id "RvY_10881"; transcript_id "RvY_10881.1"; annotation "hypothetical protein."; Pfam "[Met_10] Met-10+ like-protein"; EC "EC2.1.1.31"; KO "K15429"; similar_genes "TRMT5_BOVIN(e-value:5.0e-21;bit-score:99.0)"; Scaffold005 rebuild exon 2935655 2936159 . + . gene_id "RvY_10881"; transcript_id "RvY_10881.1"; Scaffold005 rebuild exon 2936415 2937277 . + . gene_id "RvY_10881"; transcript_id "RvY_10881.1"; Scaffold005 rebuild transcript 2937472 2938032 . - . gene_id "RvY_10882"; transcript_id "RvY_10882.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2937472 2938032 . - . gene_id "RvY_10882"; transcript_id "RvY_10882.1"; Scaffold005 rebuild transcript 2938937 2939720 . - . gene_id "RvY_10883"; transcript_id "RvY_10883.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2938937 2939336 . - . gene_id "RvY_10883"; transcript_id "RvY_10883.1"; Scaffold005 rebuild exon 2939494 2939720 . - . gene_id "RvY_10883"; transcript_id "RvY_10883.1"; Scaffold005 rebuild transcript 2940731 2942967 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2940731 2940918 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.1"; Scaffold005 rebuild exon 2941082 2941146 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.1"; Scaffold005 rebuild exon 2941272 2941416 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.1"; Scaffold005 rebuild exon 2942637 2942967 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.1"; Scaffold005 rebuild transcript 2940828 2941468 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2940828 2940918 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.2"; Scaffold005 rebuild exon 2940991 2941146 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.2"; Scaffold005 rebuild exon 2941272 2941468 . - . gene_id "RvY_10884"; transcript_id "RvY_10884.2"; Scaffold005 rebuild transcript 2941300 2941503 . + . gene_id "RvY_10885"; transcript_id "RvY_10885.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2941300 2941503 . + . gene_id "RvY_10885"; transcript_id "RvY_10885.1"; Scaffold005 rebuild transcript 2942639 2943326 . + . gene_id "RvY_10886"; transcript_id "RvY_10886.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2942639 2942855 . + . gene_id "RvY_10886"; transcript_id "RvY_10886.1"; Scaffold005 rebuild exon 2943157 2943326 . + . gene_id "RvY_10886"; transcript_id "RvY_10886.1"; Scaffold005 rebuild transcript 2943520 2944053 . + . gene_id "RvY_10887"; transcript_id "RvY_10887.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2943520 2944053 . + . gene_id "RvY_10887"; transcript_id "RvY_10887.1"; Scaffold005 rebuild transcript 2946283 2947508 . - . gene_id "RvY_10888"; transcript_id "RvY_10888.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2946283 2946910 . - . gene_id "RvY_10888"; transcript_id "RvY_10888.1"; Scaffold005 rebuild exon 2947030 2947185 . - . gene_id "RvY_10888"; transcript_id "RvY_10888.1"; Scaffold005 rebuild exon 2947294 2947508 . - . gene_id "RvY_10888"; transcript_id "RvY_10888.1"; Scaffold005 rebuild transcript 2948021 2950216 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.1"; gene_name "(1)KCNJ6(2)IRK"; annotation "(1)putative G protein-activated inward rectifier potassium channel 4(2)hypothetical protein."; Pfam "[IRK] Inward rectifier potassium channel"; CDD "Inward rectifier potassium channel."; KO "(1)K05000"; similar_genes "(1)IRK5_HUMAN(e-value:4.0e-27;bit-score:119.0)(2)IRK2_PIG(e-value:1.0e-08;bit-score:58.0)"; Scaffold005 rebuild exon 2948021 2948583 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.1"; Scaffold005 rebuild exon 2948840 2949069 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.1"; Scaffold005 rebuild exon 2949160 2949220 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.1"; Scaffold005 rebuild exon 2949424 2950216 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.1"; Scaffold005 rebuild transcript 2949266 2950216 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.2"; gene_name "(1)KCNJ6(2)IRK"; annotation "(1)putative G protein-activated inward rectifier potassium channel 4(2)hypothetical protein."; Pfam "[IRK] Inward rectifier potassium channel"; CDD "Inward rectifier potassium channel."; KO "(1)K05000"; similar_genes "(1)IRK5_HUMAN(e-value:4.0e-27;bit-score:119.0)(2)IRK2_PIG(e-value:1.0e-08;bit-score:58.0)"; Scaffold005 rebuild exon 2949266 2950216 . - . gene_id "RvY_10889"; transcript_id "RvY_10889.2"; Scaffold005 rebuild transcript 2958195 2960324 . - . gene_id "RvY_10890"; transcript_id "RvY_10890.1"; gene_name "SMYD"; annotation "SET and MYND domain-containing protein"; Pfam "[zf-MYND] MYND finger"; KO "K11426"; Scaffold005 rebuild exon 2958195 2958739 . - . gene_id "RvY_10890"; transcript_id "RvY_10890.1"; Scaffold005 rebuild exon 2959042 2959534 . - . gene_id "RvY_10890"; transcript_id "RvY_10890.1"; Scaffold005 rebuild exon 2959670 2959946 . - . gene_id "RvY_10890"; transcript_id "RvY_10890.1"; Scaffold005 rebuild exon 2960098 2960324 . - . gene_id "RvY_10890"; transcript_id "RvY_10890.1"; Scaffold005 rebuild transcript 2962441 2963149 . + . gene_id "RvY_10891"; transcript_id "RvY_10891.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2962441 2962459 . + . gene_id "RvY_10891"; transcript_id "RvY_10891.1"; Scaffold005 rebuild exon 2962670 2962897 . + . gene_id "RvY_10891"; transcript_id "RvY_10891.1"; Scaffold005 rebuild exon 2962977 2963149 . + . gene_id "RvY_10891"; transcript_id "RvY_10891.1"; Scaffold005 rebuild transcript 2964036 2965389 . + . gene_id "RvY_10892"; transcript_id "RvY_10892.1"; annotation "putative Superoxide dismutase [Cu-Zn] 1"; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; similar_genes "SODC1_MESCR(e-value:2.6e-26;bit-score:116.0)"; Scaffold005 rebuild exon 2964036 2964275 . + . gene_id "RvY_10892"; transcript_id "RvY_10892.1"; Scaffold005 rebuild exon 2964978 2965116 . + . gene_id "RvY_10892"; transcript_id "RvY_10892.1"; Scaffold005 rebuild exon 2965190 2965389 . + . gene_id "RvY_10892"; transcript_id "RvY_10892.1"; Scaffold005 rebuild transcript 2965993 2968408 . + . gene_id "RvY_10893"; transcript_id "RvY_10893.1"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; similar_genes "SODC2_ORYSJ(e-value:1.4e-18;bit-score:91.0)"; Scaffold005 rebuild exon 2965993 2966194 . + . gene_id "RvY_10893"; transcript_id "RvY_10893.1"; Scaffold005 rebuild exon 2966284 2966300 . + . gene_id "RvY_10893"; transcript_id "RvY_10893.1"; Scaffold005 rebuild exon 2966393 2966525 . + . gene_id "RvY_10893"; transcript_id "RvY_10893.1"; Scaffold005 rebuild exon 2968203 2968408 . + . gene_id "RvY_10893"; transcript_id "RvY_10893.1"; Scaffold005 rebuild transcript 2968963 2969299 . + . gene_id "RvY_10894"; transcript_id "RvY_10894.1"; gene_name "Cu-Zn_Superoxide_Dismutase"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; CDD "Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730]."; Scaffold005 rebuild exon 2968963 2969164 . + . gene_id "RvY_10894"; transcript_id "RvY_10894.1"; Scaffold005 rebuild exon 2969265 2969299 . + . gene_id "RvY_10894"; transcript_id "RvY_10894.1"; Scaffold005 rebuild transcript 2970273 2972709 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2970273 2970305 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; Scaffold005 rebuild exon 2970418 2970596 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; Scaffold005 rebuild exon 2970746 2971220 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; Scaffold005 rebuild exon 2971655 2971791 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; Scaffold005 rebuild exon 2971875 2972034 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; Scaffold005 rebuild exon 2972566 2972709 . - . gene_id "RvY_10895"; transcript_id "RvY_10895.1"; Scaffold005 rebuild transcript 2972974 2974480 . + . gene_id "RvY_10896"; transcript_id "RvY_10896.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2972974 2973318 . + . gene_id "RvY_10896"; transcript_id "RvY_10896.1"; Scaffold005 rebuild exon 2973422 2973824 . + . gene_id "RvY_10896"; transcript_id "RvY_10896.1"; Scaffold005 rebuild exon 2974077 2974480 . + . gene_id "RvY_10896"; transcript_id "RvY_10896.1"; Scaffold005 rebuild transcript 2975585 2975872 . + . gene_id "RvY_10897"; transcript_id "RvY_10897.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2975585 2975872 . + . gene_id "RvY_10897"; transcript_id "RvY_10897.1"; Scaffold005 rebuild transcript 2976943 2977365 . + . gene_id "RvY_10898"; transcript_id "RvY_10898.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold005 rebuild exon 2976943 2977365 . + . gene_id "RvY_10898"; transcript_id "RvY_10898.1"; Scaffold005 rebuild transcript 2978869 2979318 . + . gene_id "RvY_10899"; transcript_id "RvY_10899.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2978869 2979020 . + . gene_id "RvY_10899"; transcript_id "RvY_10899.1"; Scaffold005 rebuild exon 2979270 2979318 . + . gene_id "RvY_10899"; transcript_id "RvY_10899.1"; Scaffold005 rebuild transcript 2980856 2983564 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; gene_name "SF1_like-KH"; annotation "hypothetical protein."; CDD "Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA."; KO "K14942"; similar_genes "GRP33_ARTSA(e-value:9.5e-18;bit-score:88.0)"; Scaffold005 rebuild exon 2980856 2981093 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild exon 2981333 2981448 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild exon 2981533 2981649 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild exon 2981841 2981996 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild exon 2982072 2982296 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild exon 2982624 2982960 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild exon 2983446 2983564 . + . gene_id "RvY_10900"; transcript_id "RvY_10900.1"; Scaffold005 rebuild transcript 2984521 2986603 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; gene_name "FLCN"; annotation "folliculin"; Pfam "[Folliculin] Vesicle coat protein involved in Golgi to plasma membrane transport"; KO "K09594"; Scaffold005 rebuild exon 2984521 2984830 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild exon 2985087 2985189 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild exon 2985269 2985497 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild exon 2985688 2985801 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild exon 2985877 2986001 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild exon 2986205 2986372 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild exon 2986438 2986603 . - . gene_id "RvY_10901"; transcript_id "RvY_10901.1"; Scaffold005 rebuild transcript 2988826 2989009 . + . gene_id "RvY_10902"; transcript_id "RvY_10902.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2988826 2988847 . + . gene_id "RvY_10902"; transcript_id "RvY_10902.1"; Scaffold005 rebuild exon 2988906 2989009 . + . gene_id "RvY_10902"; transcript_id "RvY_10902.1"; Scaffold005 rebuild transcript 2991441 2992271 . + . gene_id "RvY_10903"; transcript_id "RvY_10903.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 2991441 2991565 . + . gene_id "RvY_10903"; transcript_id "RvY_10903.1"; Scaffold005 rebuild exon 2992058 2992271 . + . gene_id "RvY_10903"; transcript_id "RvY_10903.1"; Scaffold005 rebuild transcript 2992423 2992740 . + . gene_id "RvY_10904"; transcript_id "RvY_10904.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold005 rebuild exon 2992423 2992740 . + . gene_id "RvY_10904"; transcript_id "RvY_10904.1"; Scaffold005 rebuild transcript 2994961 2996519 . - . gene_id "RvY_10905"; transcript_id "RvY_10905.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold005 rebuild exon 2994961 2995366 . - . gene_id "RvY_10905"; transcript_id "RvY_10905.1"; Scaffold005 rebuild exon 2995455 2995672 . - . gene_id "RvY_10905"; transcript_id "RvY_10905.1"; Scaffold005 rebuild exon 2995766 2996208 . - . gene_id "RvY_10905"; transcript_id "RvY_10905.1"; Scaffold005 rebuild exon 2996348 2996519 . - . gene_id "RvY_10905"; transcript_id "RvY_10905.1"; Scaffold005 rebuild transcript 2996809 2997228 . - . gene_id "RvY_10906"; transcript_id "RvY_10906.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold005 rebuild exon 2996809 2997228 . - . gene_id "RvY_10906"; transcript_id "RvY_10906.1"; Scaffold005 rebuild transcript 2997714 2999783 . + . gene_id "RvY_10907"; transcript_id "RvY_10907.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 2997714 2997767 . + . gene_id "RvY_10907"; transcript_id "RvY_10907.1"; Scaffold005 rebuild exon 2998145 2998307 . + . gene_id "RvY_10907"; transcript_id "RvY_10907.1"; Scaffold005 rebuild exon 2999656 2999783 . + . gene_id "RvY_10907"; transcript_id "RvY_10907.1"; Scaffold005 rebuild transcript 3000259 3001473 . + . gene_id "RvY_10908"; transcript_id "RvY_10908.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3000259 3001320 . + . gene_id "RvY_10908"; transcript_id "RvY_10908.1"; Scaffold005 rebuild exon 3001375 3001473 . + . gene_id "RvY_10908"; transcript_id "RvY_10908.1"; Scaffold005 rebuild transcript 3002872 3003153 . - . gene_id "RvY_10909"; transcript_id "RvY_10909.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3002872 3003153 . - . gene_id "RvY_10909"; transcript_id "RvY_10909.1"; Scaffold005 rebuild transcript 3005223 3010191 . + . gene_id "RvY_10910"; transcript_id "RvY_10910.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx|[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold005 rebuild exon 3005223 3005456 . + . gene_id "RvY_10910"; transcript_id "RvY_10910.1"; Scaffold005 rebuild exon 3005533 3005690 . + . gene_id "RvY_10910"; transcript_id "RvY_10910.1"; Scaffold005 rebuild exon 3007180 3007690 . + . gene_id "RvY_10910"; transcript_id "RvY_10910.1"; Scaffold005 rebuild exon 3008920 3009535 . + . gene_id "RvY_10910"; transcript_id "RvY_10910.1"; Scaffold005 rebuild exon 3009788 3010191 . + . gene_id "RvY_10910"; transcript_id "RvY_10910.1"; Scaffold005 rebuild transcript 3010410 3010781 . + . gene_id "RvY_10911"; transcript_id "RvY_10911.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3010410 3010781 . + . gene_id "RvY_10911"; transcript_id "RvY_10911.1"; Scaffold005 rebuild transcript 3010994 3016343 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3010994 3011069 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.1"; Scaffold005 rebuild exon 3014423 3014610 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.1"; Scaffold005 rebuild exon 3014677 3014787 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.1"; Scaffold005 rebuild exon 3014845 3014922 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.1"; Scaffold005 rebuild exon 3015132 3016343 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.1"; Scaffold005 rebuild transcript 3014419 3016343 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3014419 3014610 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.2"; Scaffold005 rebuild exon 3014677 3014787 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.2"; Scaffold005 rebuild exon 3014845 3014922 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.2"; Scaffold005 rebuild exon 3015132 3016343 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.2"; Scaffold005 rebuild transcript 3015081 3016343 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3015081 3016343 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.3"; Scaffold005 rebuild transcript 3014638 3016163 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.4"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3014638 3014787 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.4"; Scaffold005 rebuild exon 3014845 3014922 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.4"; Scaffold005 rebuild exon 3015132 3016163 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.4"; Scaffold005 rebuild transcript 3015081 3016163 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.5"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3015081 3016163 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.5"; Scaffold005 rebuild transcript 3015081 3016025 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.6"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3015081 3016025 . - . gene_id "RvY_10912"; transcript_id "RvY_10912.6"; Scaffold005 rebuild transcript 3011424 3013149 . + . gene_id "RvY_10913"; transcript_id "RvY_10913.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold005 rebuild exon 3011424 3011532 . + . gene_id "RvY_10913"; transcript_id "RvY_10913.1"; Scaffold005 rebuild exon 3011607 3011832 . + . gene_id "RvY_10913"; transcript_id "RvY_10913.1"; Scaffold005 rebuild exon 3011946 3012206 . + . gene_id "RvY_10913"; transcript_id "RvY_10913.1"; Scaffold005 rebuild exon 3012299 3012908 . + . gene_id "RvY_10913"; transcript_id "RvY_10913.1"; Scaffold005 rebuild exon 3013144 3013149 . + . gene_id "RvY_10913"; transcript_id "RvY_10913.1"; Scaffold005 rebuild transcript 3018296 3018454 . - . gene_id "RvY_10914"; transcript_id "RvY_10914.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3018296 3018454 . - . gene_id "RvY_10914"; transcript_id "RvY_10914.1"; Scaffold005 rebuild transcript 3020134 3021678 . + . gene_id "RvY_10915"; transcript_id "RvY_10915.1"; annotation "hypothetical protein."; similar_genes "CD022_DANRE(e-value:1.3e-06;bit-score:51.0)"; Scaffold005 rebuild exon 3020134 3021678 . + . gene_id "RvY_10915"; transcript_id "RvY_10915.1"; Scaffold005 rebuild transcript 3021743 3022575 . - . gene_id "RvY_10916"; transcript_id "RvY_10916.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3021743 3022107 . - . gene_id "RvY_10916"; transcript_id "RvY_10916.1"; Scaffold005 rebuild exon 3022200 3022246 . - . gene_id "RvY_10916"; transcript_id "RvY_10916.1"; Scaffold005 rebuild exon 3022391 3022575 . - . gene_id "RvY_10916"; transcript_id "RvY_10916.1"; Scaffold005 rebuild transcript 3024089 3024775 . + . gene_id "RvY_10917"; transcript_id "RvY_10917.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold005 rebuild exon 3024089 3024775 . + . gene_id "RvY_10917"; transcript_id "RvY_10917.1"; Scaffold005 rebuild transcript 3025097 3026360 . - . gene_id "RvY_10918"; transcript_id "RvY_10918.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3025097 3025263 . - . gene_id "RvY_10918"; transcript_id "RvY_10918.1"; Scaffold005 rebuild exon 3025356 3025463 . - . gene_id "RvY_10918"; transcript_id "RvY_10918.1"; Scaffold005 rebuild exon 3025616 3025727 . - . gene_id "RvY_10918"; transcript_id "RvY_10918.1"; Scaffold005 rebuild exon 3026189 3026232 . - . gene_id "RvY_10918"; transcript_id "RvY_10918.1"; Scaffold005 rebuild exon 3026309 3026360 . - . gene_id "RvY_10918"; transcript_id "RvY_10918.1"; Scaffold005 rebuild transcript 3028497 3029881 . + . gene_id "RvY_10919"; transcript_id "RvY_10919.1"; annotation "hypothetical protein."; Pfam "[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold005 rebuild exon 3028497 3028667 . + . gene_id "RvY_10919"; transcript_id "RvY_10919.1"; Scaffold005 rebuild exon 3029282 3029881 . + . gene_id "RvY_10919"; transcript_id "RvY_10919.1"; Scaffold005 rebuild transcript 3030140 3031416 . - . gene_id "RvY_10920"; transcript_id "RvY_10920.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3030140 3030810 . - . gene_id "RvY_10920"; transcript_id "RvY_10920.1"; Scaffold005 rebuild exon 3031071 3031416 . - . gene_id "RvY_10920"; transcript_id "RvY_10920.1"; Scaffold005 rebuild transcript 3032556 3035318 . + . gene_id "RvY_10921"; transcript_id "RvY_10921.1"; annotation "hypothetical protein."; Pfam "[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; Scaffold005 rebuild exon 3032556 3033116 . + . gene_id "RvY_10921"; transcript_id "RvY_10921.1"; Scaffold005 rebuild exon 3033251 3033395 . + . gene_id "RvY_10921"; transcript_id "RvY_10921.1"; Scaffold005 rebuild exon 3033538 3033999 . + . gene_id "RvY_10921"; transcript_id "RvY_10921.1"; Scaffold005 rebuild exon 3034271 3034379 . + . gene_id "RvY_10921"; transcript_id "RvY_10921.1"; Scaffold005 rebuild exon 3034679 3035318 . + . gene_id "RvY_10921"; transcript_id "RvY_10921.1"; Scaffold005 rebuild transcript 3036375 3036929 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3036375 3036546 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.1"; Scaffold005 rebuild exon 3036627 3036750 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.1"; Scaffold005 rebuild exon 3036818 3036929 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.1"; Scaffold005 rebuild transcript 3035939 3036402 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3035939 3036101 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.2"; Scaffold005 rebuild exon 3036167 3036402 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.2"; Scaffold005 rebuild transcript 3035747 3036402 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3035747 3035763 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.3"; Scaffold005 rebuild exon 3035992 3036101 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.3"; Scaffold005 rebuild exon 3036167 3036402 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.3"; Scaffold005 rebuild transcript 3036478 3036942 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.4"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3036478 3036546 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.4"; Scaffold005 rebuild exon 3036627 3036750 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.4"; Scaffold005 rebuild exon 3036818 3036942 . - . gene_id "RvY_10922"; transcript_id "RvY_10922.4"; Scaffold005 rebuild transcript 3037454 3039360 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; gene_name "PPIE"; annotation "(1)putative Peptidyl-prolyl cis-trans isomerase E(2)Peptidyl-prolyl cis-trans isomerase E"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase Scaffold005 rebuild exon 3037454 3037484 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3037549 3037647 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3037728 3037771 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3037851 3037877 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3037973 3038054 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3038146 3038288 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3038376 3038502 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3038583 3038662 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3038742 3039030 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3039136 3039215 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild exon 3039292 3039360 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.1"; Scaffold005 rebuild transcript 3037454 3039360 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; gene_name "PPIE"; annotation "(1)putative Peptidyl-prolyl cis-trans isomerase E(2)Peptidyl-prolyl cis-trans isomerase E"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase Scaffold005 rebuild exon 3037454 3037484 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3037549 3037647 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3037728 3037771 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3037851 3037877 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3037973 3038054 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3038146 3038288 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3038376 3038502 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3038583 3038662 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3038742 3038910 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3039136 3039215 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild exon 3039292 3039360 . + . gene_id "RvY_10923"; transcript_id "RvY_10923.2"; Scaffold005 rebuild transcript 3039623 3042269 . - . gene_id "RvY_10924"; transcript_id "RvY_10924.1"; annotation "hypothetical protein."; Pfam "[PK] Pyruvate kinase, barrel domain"; EC "EC2.7.1.40"; similar_genes "KPYK_DROME(e-value:6.2e-15;bit-score:79.0)"; Scaffold005 rebuild exon 3039623 3039730 . - . gene_id "RvY_10924"; transcript_id "RvY_10924.1"; Scaffold005 rebuild exon 3041691 3042269 . - . gene_id "RvY_10924"; transcript_id "RvY_10924.1"; Scaffold005 rebuild transcript 3045271 3047297 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.1"; gene_name "(2)CYP2J"; annotation "(1,3)hypothetical protein.(2)cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.-.-(2)EC1.14.-.-|EC1.14.14.1"; KO "(2)K07418"; similar_genes "(1,2)CP18A_DROME(e-value:1.1e-18;bit-score:91.0)"; Scaffold005 rebuild exon 3045271 3045289 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.1"; Scaffold005 rebuild exon 3045410 3046303 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.1"; Scaffold005 rebuild exon 3046537 3046713 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.1"; Scaffold005 rebuild exon 3046778 3047041 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.1"; Scaffold005 rebuild exon 3047113 3047297 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.1"; Scaffold005 rebuild transcript 3045127 3047297 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; gene_name "(2)CYP2J"; annotation "(1,3)hypothetical protein.(2)cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.-.-(2)EC1.14.-.-|EC1.14.14.1"; KO "(2)K07418"; similar_genes "(1,2)CP18A_DROME(e-value:1.1e-18;bit-score:91.0)"; Scaffold005 rebuild exon 3045127 3045229 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild exon 3045410 3045649 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild exon 3045708 3045754 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild exon 3045814 3046303 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild exon 3046537 3046713 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild exon 3046778 3047041 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild exon 3047113 3047297 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.2"; Scaffold005 rebuild transcript 3045127 3046407 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.3"; gene_name "(2)CYP2J"; annotation "(1,3)hypothetical protein.(2)cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.-.-(2)EC1.14.-.-|EC1.14.14.1"; KO "(2)K07418"; similar_genes "(1,2)CP18A_DROME(e-value:1.1e-18;bit-score:91.0)"; Scaffold005 rebuild exon 3045127 3045229 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.3"; Scaffold005 rebuild exon 3045410 3045649 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.3"; Scaffold005 rebuild exon 3045708 3045754 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.3"; Scaffold005 rebuild exon 3045814 3046407 . + . gene_id "RvY_10925"; transcript_id "RvY_10925.3"; Scaffold005 rebuild transcript 3047777 3053256 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; annotation "hypothetical protein."; Pfam "[Spc97_Spc98] Spc97 / Spc98 family"; Scaffold005 rebuild exon 3047777 3048071 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3048609 3048775 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3048863 3048945 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3049015 3049338 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3049404 3049683 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3049895 3050173 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3050360 3050805 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3050914 3051055 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3051680 3051874 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3052288 3052548 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3052627 3052870 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild exon 3053087 3053256 . + . gene_id "RvY_10926"; transcript_id "RvY_10926.1"; Scaffold005 rebuild transcript 3053894 3054931 . + . gene_id "RvY_10927"; transcript_id "RvY_10927.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold005 rebuild exon 3053894 3054224 . + . gene_id "RvY_10927"; transcript_id "RvY_10927.1"; Scaffold005 rebuild exon 3054316 3054354 . + . gene_id "RvY_10927"; transcript_id "RvY_10927.1"; Scaffold005 rebuild exon 3054543 3054931 . + . gene_id "RvY_10927"; transcript_id "RvY_10927.1"; Scaffold005 rebuild transcript 3055305 3059764 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; gene_name "(1,2,4)CYCc(3)PBP1_NPR_GC_like"; annotation "(1,4)putative Guanylate cyclase 2G(2,3)hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2,4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2,4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,4)GUC2G_RAT(e-value:3.1e-29;bit-score:126.0)(2)GUC2G_RAT(e-value:1.1e-22;bit-score:104.0)"; Scaffold005 rebuild exon 3055305 3055328 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3055419 3055499 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3055569 3055712 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3055833 3055883 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3056195 3056371 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3056479 3056611 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3056776 3056860 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3056963 3057050 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3057118 3057282 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3057361 3057531 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3057837 3058277 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3058544 3058719 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3058801 3058999 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3059067 3059269 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3059459 3059600 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild exon 3059693 3059764 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.1"; Scaffold005 rebuild transcript 3055305 3059020 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; gene_name "(1,2,4)CYCc(3)PBP1_NPR_GC_like"; annotation "(1,4)putative Guanylate cyclase 2G(2,3)hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2,4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2,4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,4)GUC2G_RAT(e-value:3.1e-29;bit-score:126.0)(2)GUC2G_RAT(e-value:1.1e-22;bit-score:104.0)"; Scaffold005 rebuild exon 3055305 3055328 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3055419 3055499 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3055569 3055712 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3055833 3055883 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3056195 3056371 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3056479 3056611 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3056776 3056860 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3056963 3057050 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3057118 3057282 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3057361 3057531 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3057837 3058277 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3058544 3058719 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild exon 3058801 3059020 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.2"; Scaffold005 rebuild transcript 3055305 3058346 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; gene_name "(1,2,4)CYCc(3)PBP1_NPR_GC_like"; annotation "(1,4)putative Guanylate cyclase 2G(2,3)hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2,4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2,4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,4)GUC2G_RAT(e-value:3.1e-29;bit-score:126.0)(2)GUC2G_RAT(e-value:1.1e-22;bit-score:104.0)"; Scaffold005 rebuild exon 3055305 3055328 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3055419 3055499 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3055569 3055712 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3055833 3055883 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3056195 3056371 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3056479 3056611 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3056776 3056860 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3056963 3057050 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3057118 3057282 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3057361 3057531 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild exon 3057837 3058346 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.3"; Scaffold005 rebuild transcript 3057166 3059606 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; gene_name "(1,2,4)CYCc(3)PBP1_NPR_GC_like"; annotation "(1,4)putative Guanylate cyclase 2G(2,3)hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2,4)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1,2,4)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.(3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,4)GUC2G_RAT(e-value:3.1e-29;bit-score:126.0)(2)GUC2G_RAT(e-value:1.1e-22;bit-score:104.0)"; Scaffold005 rebuild exon 3057166 3057282 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild exon 3057361 3057531 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild exon 3057837 3058277 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild exon 3058544 3058719 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild exon 3058801 3058999 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild exon 3059067 3059269 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild exon 3059459 3059606 . + . gene_id "RvY_10928"; transcript_id "RvY_10928.4"; Scaffold005 rebuild transcript 3059821 3060092 . - . gene_id "RvY_10929"; transcript_id "RvY_10929.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3059821 3059909 . - . gene_id "RvY_10929"; transcript_id "RvY_10929.1"; Scaffold005 rebuild exon 3059975 3060092 . - . gene_id "RvY_10929"; transcript_id "RvY_10929.1"; Scaffold005 rebuild transcript 3060187 3061796 . - . gene_id "RvY_10930"; transcript_id "RvY_10930.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3060187 3060302 . - . gene_id "RvY_10930"; transcript_id "RvY_10930.1"; Scaffold005 rebuild exon 3060608 3060980 . - . gene_id "RvY_10930"; transcript_id "RvY_10930.1"; Scaffold005 rebuild exon 3061659 3061796 . - . gene_id "RvY_10930"; transcript_id "RvY_10930.1"; Scaffold005 rebuild transcript 3061981 3062367 . + . gene_id "RvY_10931"; transcript_id "RvY_10931.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3061981 3062367 . + . gene_id "RvY_10931"; transcript_id "RvY_10931.1"; Scaffold005 rebuild transcript 3062043 3062432 . - . gene_id "RvY_10932"; transcript_id "RvY_10932.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3062043 3062432 . - . gene_id "RvY_10932"; transcript_id "RvY_10932.1"; Scaffold005 rebuild transcript 3063179 3063562 . - . gene_id "RvY_10933"; transcript_id "RvY_10933.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3063179 3063562 . - . gene_id "RvY_10933"; transcript_id "RvY_10933.1"; Scaffold005 rebuild transcript 3063575 3063781 . + . gene_id "RvY_10934"; transcript_id "RvY_10934.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3063575 3063781 . + . gene_id "RvY_10934"; transcript_id "RvY_10934.1"; Scaffold005 rebuild transcript 3064044 3064334 . - . gene_id "RvY_10935"; transcript_id "RvY_10935.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3064044 3064334 . - . gene_id "RvY_10935"; transcript_id "RvY_10935.1"; Scaffold005 rebuild transcript 3066900 3067971 . - . gene_id "RvY_10936"; transcript_id "RvY_10936.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold005 rebuild exon 3066900 3067521 . - . gene_id "RvY_10936"; transcript_id "RvY_10936.1"; Scaffold005 rebuild exon 3067606 3067755 . - . gene_id "RvY_10936"; transcript_id "RvY_10936.1"; Scaffold005 rebuild exon 3067844 3067971 . - . gene_id "RvY_10936"; transcript_id "RvY_10936.1"; Scaffold005 rebuild transcript 3068676 3068864 . + . gene_id "RvY_10937"; transcript_id "RvY_10937.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3068676 3068864 . + . gene_id "RvY_10937"; transcript_id "RvY_10937.1"; Scaffold005 rebuild transcript 3068892 3069053 . + . gene_id "RvY_10938"; transcript_id "RvY_10938.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3068892 3069053 . + . gene_id "RvY_10938"; transcript_id "RvY_10938.1"; Scaffold005 rebuild transcript 3069558 3069797 . + . gene_id "RvY_10939"; transcript_id "RvY_10939.1"; gene_name "UDPGT"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "UDP-glucoronosyl and UDP-glucosyl transferase."; EC "EC2.4.1.238"; similar_genes "ANGT_GENTR(e-value:1.0e-10;bit-score:65.0)"; Scaffold005 rebuild exon 3069558 3069797 . + . gene_id "RvY_10939"; transcript_id "RvY_10939.1"; Scaffold005 rebuild transcript 3071404 3072477 . - . gene_id "RvY_10940"; transcript_id "RvY_10940.1"; gene_name "HS3ST1"; annotation "putative Heparan sulfate glucosamine 3-O-sulfotransferase 1"; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; EC "EC2.8.2.23"; KO "K01024"; similar_genes "HS3S1_HUMAN(e-value:1.1e-35;bit-score:148.0)"; Scaffold005 rebuild exon 3071404 3072477 . - . gene_id "RvY_10940"; transcript_id "RvY_10940.1"; Scaffold005 rebuild transcript 3078345 3079098 . - . gene_id "RvY_10941"; transcript_id "RvY_10941.1"; gene_name "UbiG"; annotation "hypothetical protein."; Pfam "[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain"; CDD "ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase."; Scaffold005 rebuild exon 3078345 3078787 . - . gene_id "RvY_10941"; transcript_id "RvY_10941.1"; Scaffold005 rebuild exon 3079050 3079098 . - . gene_id "RvY_10941"; transcript_id "RvY_10941.1"; Scaffold005 rebuild transcript 3079554 3080310 . + . gene_id "RvY_10942"; transcript_id "RvY_10942.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3079554 3079671 . + . gene_id "RvY_10942"; transcript_id "RvY_10942.1"; Scaffold005 rebuild exon 3079739 3080310 . + . gene_id "RvY_10942"; transcript_id "RvY_10942.1"; Scaffold005 rebuild transcript 3080849 3081358 . + . gene_id "RvY_10943"; transcript_id "RvY_10943.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3080849 3081358 . + . gene_id "RvY_10943"; transcript_id "RvY_10943.1"; Scaffold005 rebuild transcript 3081513 3081761 . - . gene_id "RvY_10944"; transcript_id "RvY_10944.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3081513 3081761 . - . gene_id "RvY_10944"; transcript_id "RvY_10944.1"; Scaffold005 rebuild transcript 3090791 3091522 . - . gene_id "RvY_10945"; transcript_id "RvY_10945.1"; gene_name "(1)INT_Cre"; annotation "hypothetical protein."; CDD "(1)Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold005 rebuild exon 3090791 3091522 . - . gene_id "RvY_10945"; transcript_id "RvY_10945.1"; Scaffold005 rebuild transcript 3090531 3091279 . - . gene_id "RvY_10945"; transcript_id "RvY_10945.2"; gene_name "(1)INT_Cre"; annotation "hypothetical protein."; CDD "(1)Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold005 rebuild exon 3090531 3090986 . - . gene_id "RvY_10945"; transcript_id "RvY_10945.2"; Scaffold005 rebuild exon 3091028 3091279 . - . gene_id "RvY_10945"; transcript_id "RvY_10945.2"; Scaffold005 rebuild transcript 3093651 3093827 . + . gene_id "RvY_10946"; transcript_id "RvY_10946.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3093651 3093827 . + . gene_id "RvY_10946"; transcript_id "RvY_10946.1"; Scaffold005 rebuild transcript 3094927 3095094 . - . gene_id "RvY_10947"; transcript_id "RvY_10947.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3094927 3095094 . - . gene_id "RvY_10947"; transcript_id "RvY_10947.1"; Scaffold005 rebuild transcript 3095868 3096578 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold005 rebuild exon 3095868 3096092 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.1"; Scaffold005 rebuild exon 3096179 3096376 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.1"; Scaffold005 rebuild exon 3096444 3096494 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.1"; Scaffold005 rebuild exon 3096561 3096578 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.1"; Scaffold005 rebuild transcript 3096495 3097053 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold005 rebuild exon 3096495 3096704 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.2"; Scaffold005 rebuild exon 3096778 3096858 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.2"; Scaffold005 rebuild exon 3096939 3096980 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.2"; Scaffold005 rebuild exon 3097051 3097053 . - . gene_id "RvY_10948"; transcript_id "RvY_10948.2"; Scaffold005 rebuild transcript 3097714 3098511 . - . gene_id "RvY_10949"; transcript_id "RvY_10949.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3097714 3097993 . - . gene_id "RvY_10949"; transcript_id "RvY_10949.1"; Scaffold005 rebuild exon 3098438 3098511 . - . gene_id "RvY_10949"; transcript_id "RvY_10949.1"; Scaffold005 rebuild transcript 3102584 3103677 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|(1,2)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold005 rebuild exon 3102584 3102751 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.1"; Scaffold005 rebuild exon 3102841 3103677 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.1"; Scaffold005 rebuild transcript 3102736 3103677 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.2"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|(1,2)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold005 rebuild exon 3102736 3103677 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.2"; Scaffold005 rebuild transcript 3102736 3103383 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.3"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|(1,2)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold005 rebuild exon 3102736 3103383 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.3"; Scaffold005 rebuild transcript 3102687 3103303 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.4"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|(1,2)[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold005 rebuild exon 3102687 3102751 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.4"; Scaffold005 rebuild exon 3102841 3103303 . - . gene_id "RvY_10950"; transcript_id "RvY_10950.4"; Scaffold005 rebuild transcript 3103112 3103312 . + . gene_id "RvY_10951"; transcript_id "RvY_10951.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3103112 3103312 . + . gene_id "RvY_10951"; transcript_id "RvY_10951.1"; Scaffold005 rebuild transcript 3105252 3105849 . + . gene_id "RvY_10952"; transcript_id "RvY_10952.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3105252 3105324 . + . gene_id "RvY_10952"; transcript_id "RvY_10952.1"; Scaffold005 rebuild exon 3105395 3105437 . + . gene_id "RvY_10952"; transcript_id "RvY_10952.1"; Scaffold005 rebuild exon 3105597 3105849 . + . gene_id "RvY_10952"; transcript_id "RvY_10952.1"; Scaffold005 rebuild transcript 3108618 3109467 . + . gene_id "RvY_10953"; transcript_id "RvY_10953.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3108618 3108732 . + . gene_id "RvY_10953"; transcript_id "RvY_10953.1"; Scaffold005 rebuild exon 3108908 3109467 . + . gene_id "RvY_10953"; transcript_id "RvY_10953.1"; Scaffold005 rebuild transcript 3109571 3110692 . - . gene_id "RvY_10954"; transcript_id "RvY_10954.1"; gene_name "B3GALT1"; annotation "beta-1,3-galactosyltransferase 1 [EC:2.4.1.-]"; Pfam "[Galactosyl_T] Galactosyltransferase"; EC "EC2.4.1.-"; KO "K07819"; Scaffold005 rebuild exon 3109571 3110692 . - . gene_id "RvY_10954"; transcript_id "RvY_10954.1"; Scaffold005 rebuild transcript 3113687 3115260 . + . gene_id "RvY_10955"; transcript_id "RvY_10955.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3113687 3113970 . + . gene_id "RvY_10955"; transcript_id "RvY_10955.1"; Scaffold005 rebuild exon 3115251 3115260 . + . gene_id "RvY_10955"; transcript_id "RvY_10955.1"; Scaffold005 rebuild transcript 3114853 3115107 . + . gene_id "RvY_10955"; transcript_id "RvY_10955.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3114853 3115107 . + . gene_id "RvY_10955"; transcript_id "RvY_10955.2"; Scaffold005 rebuild transcript 3117260 3117517 . + . gene_id "RvY_10956"; transcript_id "RvY_10956.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3117260 3117517 . + . gene_id "RvY_10956"; transcript_id "RvY_10956.1"; Scaffold005 rebuild transcript 3118099 3124788 . - . gene_id "RvY_10957"; transcript_id "RvY_10957.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3118099 3118475 . - . gene_id "RvY_10957"; transcript_id "RvY_10957.1"; Scaffold005 rebuild exon 3118582 3118840 . - . gene_id "RvY_10957"; transcript_id "RvY_10957.1"; Scaffold005 rebuild exon 3118935 3119201 . - . gene_id "RvY_10957"; transcript_id "RvY_10957.1"; Scaffold005 rebuild exon 3124502 3124662 . - . gene_id "RvY_10957"; transcript_id "RvY_10957.1"; Scaffold005 rebuild exon 3124758 3124788 . - . gene_id "RvY_10957"; transcript_id "RvY_10957.1"; Scaffold005 rebuild transcript 3121922 3122137 . + . gene_id "RvY_10958"; transcript_id "RvY_10958.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3121922 3122137 . + . gene_id "RvY_10958"; transcript_id "RvY_10958.1"; Scaffold005 rebuild transcript 3127319 3128239 . - . gene_id "RvY_10959"; transcript_id "RvY_10959.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3127319 3128239 . - . gene_id "RvY_10959"; transcript_id "RvY_10959.1"; Scaffold005 rebuild transcript 3128707 3133149 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3128707 3128836 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; Scaffold005 rebuild exon 3128912 3129459 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; Scaffold005 rebuild exon 3129739 3130605 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; Scaffold005 rebuild exon 3130749 3130794 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; Scaffold005 rebuild exon 3131420 3131532 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; Scaffold005 rebuild exon 3132115 3133149 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.1"; Scaffold005 rebuild transcript 3129459 3133149 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3129459 3129459 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.2"; Scaffold005 rebuild exon 3129734 3130605 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.2"; Scaffold005 rebuild exon 3130749 3130794 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.2"; Scaffold005 rebuild exon 3131420 3131532 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.2"; Scaffold005 rebuild exon 3132115 3133149 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.2"; Scaffold005 rebuild transcript 3128707 3130605 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3128707 3128836 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.3"; Scaffold005 rebuild exon 3128912 3129459 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.3"; Scaffold005 rebuild exon 3129739 3130074 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.3"; Scaffold005 rebuild exon 3130165 3130605 . - . gene_id "RvY_10960"; transcript_id "RvY_10960.3"; Scaffold005 rebuild transcript 3134450 3136189 . - . gene_id "RvY_10961"; transcript_id "RvY_10961.1"; gene_name "Band_7_stomatin_like"; annotation "Stomatin-like protein 2"; Pfam "[Band_7] SPFH domain / Band 7 family"; CDD "Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch."; similar_genes "STML2_RAT(e-value:3.3e-90;bit-score:329.0)"; Scaffold005 rebuild exon 3134450 3134941 . - . gene_id "RvY_10961"; transcript_id "RvY_10961.1"; Scaffold005 rebuild exon 3135219 3135661 . - . gene_id "RvY_10961"; transcript_id "RvY_10961.1"; Scaffold005 rebuild exon 3135922 3136189 . - . gene_id "RvY_10961"; transcript_id "RvY_10961.1"; Scaffold005 rebuild transcript 3140295 3142746 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; gene_name "(1,2)PHACA"; annotation "(1,2)phenylacetate 2-hydroxylase [EC:1.14.13.-](3,4)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1,2)EC1.14.13.-|EC1.14.14.1(3)EC1.14.14.1"; KO "(1,2)K10437"; similar_genes "(1,2,3)CP1A1_LIZAU(e-value:6.9e-12;bit-score:69.0)"; Scaffold005 rebuild exon 3140295 3140637 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; Scaffold005 rebuild exon 3140821 3141369 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; Scaffold005 rebuild exon 3141440 3141478 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; Scaffold005 rebuild exon 3141584 3141844 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; Scaffold005 rebuild exon 3142056 3142196 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; Scaffold005 rebuild exon 3142403 3142746 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.1"; Scaffold005 rebuild transcript 3140295 3142700 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; gene_name "(1,2)PHACA"; annotation "(1,2)phenylacetate 2-hydroxylase [EC:1.14.13.-](3,4)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1,2)EC1.14.13.-|EC1.14.14.1(3)EC1.14.14.1"; KO "(1,2)K10437"; similar_genes "(1,2,3)CP1A1_LIZAU(e-value:6.9e-12;bit-score:69.0)"; Scaffold005 rebuild exon 3140295 3140637 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild exon 3140821 3141369 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild exon 3141440 3141478 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild exon 3141584 3141844 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild exon 3142056 3142196 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild exon 3142403 3142543 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild exon 3142636 3142700 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.2"; Scaffold005 rebuild transcript 3140295 3142276 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.3"; gene_name "(1,2)PHACA"; annotation "(1,2)phenylacetate 2-hydroxylase [EC:1.14.13.-](3,4)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1,2)EC1.14.13.-|EC1.14.14.1(3)EC1.14.14.1"; KO "(1,2)K10437"; similar_genes "(1,2,3)CP1A1_LIZAU(e-value:6.9e-12;bit-score:69.0)"; Scaffold005 rebuild exon 3140295 3140637 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.3"; Scaffold005 rebuild exon 3140821 3141369 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.3"; Scaffold005 rebuild exon 3141440 3141478 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.3"; Scaffold005 rebuild exon 3141584 3141844 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.3"; Scaffold005 rebuild exon 3142056 3142276 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.3"; Scaffold005 rebuild transcript 3140295 3141897 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.4"; gene_name "(1,2)PHACA"; annotation "(1,2)phenylacetate 2-hydroxylase [EC:1.14.13.-](3,4)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1,2)EC1.14.13.-|EC1.14.14.1(3)EC1.14.14.1"; KO "(1,2)K10437"; similar_genes "(1,2,3)CP1A1_LIZAU(e-value:6.9e-12;bit-score:69.0)"; Scaffold005 rebuild exon 3140295 3140637 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.4"; Scaffold005 rebuild exon 3140821 3141369 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.4"; Scaffold005 rebuild exon 3141440 3141478 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.4"; Scaffold005 rebuild exon 3141584 3141897 . + . gene_id "RvY_10962"; transcript_id "RvY_10962.4"; Scaffold005 rebuild transcript 3142870 3143349 . - . gene_id "RvY_10963"; transcript_id "RvY_10963.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3142870 3143237 . - . gene_id "RvY_10963"; transcript_id "RvY_10963.1"; Scaffold005 rebuild exon 3143316 3143349 . - . gene_id "RvY_10963"; transcript_id "RvY_10963.1"; Scaffold005 rebuild transcript 3144111 3145298 . + . gene_id "RvY_10964"; transcript_id "RvY_10964.1"; gene_name "PPIB"; annotation "Peptidyl-prolyl cis-trans isomerase 6"; Pfam "[Pro_isomerase] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD"; EC "EC5.2.1.8"; KO "K03768"; similar_genes "CYP6_CAEEL(e-value:1.8e-65;bit-score:247.0)"; Scaffold005 rebuild exon 3144111 3144290 . + . gene_id "RvY_10964"; transcript_id "RvY_10964.1"; Scaffold005 rebuild exon 3144372 3144570 . + . gene_id "RvY_10964"; transcript_id "RvY_10964.1"; Scaffold005 rebuild exon 3144633 3144709 . + . gene_id "RvY_10964"; transcript_id "RvY_10964.1"; Scaffold005 rebuild exon 3144951 3145091 . + . gene_id "RvY_10964"; transcript_id "RvY_10964.1"; Scaffold005 rebuild exon 3145167 3145298 . + . gene_id "RvY_10964"; transcript_id "RvY_10964.1"; Scaffold005 rebuild transcript 3145730 3148242 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3145730 3146398 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild exon 3146662 3146865 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild exon 3147174 3147467 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild exon 3147539 3147656 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild exon 3147768 3147903 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild exon 3147968 3148066 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild exon 3148131 3148242 . - . gene_id "RvY_10965"; transcript_id "RvY_10965.1"; Scaffold005 rebuild transcript 3149266 3149598 . + . gene_id "RvY_10966"; transcript_id "RvY_10966.1"; gene_name "BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold005 rebuild exon 3149266 3149598 . + . gene_id "RvY_10966"; transcript_id "RvY_10966.1"; Scaffold005 rebuild transcript 3149651 3149845 . + . gene_id "RvY_10967"; transcript_id "RvY_10967.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3149651 3149845 . + . gene_id "RvY_10967"; transcript_id "RvY_10967.1"; Scaffold005 rebuild transcript 3150074 3151194 . + . gene_id "RvY_10968"; transcript_id "RvY_10968.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3150074 3150329 . + . gene_id "RvY_10968"; transcript_id "RvY_10968.1"; Scaffold005 rebuild exon 3151103 3151194 . + . gene_id "RvY_10968"; transcript_id "RvY_10968.1"; Scaffold005 rebuild transcript 3153118 3153312 . + . gene_id "RvY_10969"; transcript_id "RvY_10969.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3153118 3153312 . + . gene_id "RvY_10969"; transcript_id "RvY_10969.1"; Scaffold005 rebuild transcript 3155297 3156244 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3155297 3155644 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.1"; Scaffold005 rebuild exon 3155729 3156074 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.1"; Scaffold005 rebuild exon 3156141 3156244 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.1"; Scaffold005 rebuild transcript 3155297 3156559 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3155297 3155644 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.2"; Scaffold005 rebuild exon 3156257 3156559 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.2"; Scaffold005 rebuild transcript 3156248 3156697 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3156248 3156697 . - . gene_id "RvY_10970"; transcript_id "RvY_10970.3"; Scaffold005 rebuild transcript 3156302 3156586 . + . gene_id "RvY_10971"; transcript_id "RvY_10971.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3156302 3156586 . + . gene_id "RvY_10971"; transcript_id "RvY_10971.1"; Scaffold005 rebuild transcript 3158121 3159288 . + . gene_id "RvY_10972"; transcript_id "RvY_10972.1"; gene_name "ppa"; annotation "Probable inorganic pyrophosphatase 1"; Pfam "[Pyrophosphatase] Inorganic pyrophosphatase"; EC "EC3.6.1.1"; KO "K01507"; similar_genes "IPYR_CAEEL(e-value:5.0e-74;bit-score:275.0)"; Scaffold005 rebuild exon 3158121 3158787 . + . gene_id "RvY_10972"; transcript_id "RvY_10972.1"; Scaffold005 rebuild exon 3158903 3159288 . + . gene_id "RvY_10972"; transcript_id "RvY_10972.1"; Scaffold005 rebuild transcript 3159939 3162455 . + . gene_id "RvY_10973"; transcript_id "RvY_10973.1"; gene_name "DPM1"; annotation "Dolichol-phosphate mannosyltransferase"; Pfam "[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[Glyco_transf_21] Glycosyl transferase family 21"; CDD "DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily."; EC "EC2.4.1.83"; KO "K00721"; similar_genes "DPM1_PIG(e-value:1.1e-90;bit-score:330.0)"; Scaffold005 rebuild exon 3159939 3160320 . + . gene_id "RvY_10973"; transcript_id "RvY_10973.1"; Scaffold005 rebuild exon 3162106 3162455 . + . gene_id "RvY_10973"; transcript_id "RvY_10973.1"; Scaffold005 rebuild transcript 3162578 3164955 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; annotation "hypothetical protein."; Pfam "[Aa_trans] Transmembrane amino acid transporter protein"; KO "K14995"; similar_genes "YSPK_CAEEL(e-value:6.7e-08;bit-score:55.0)"; Scaffold005 rebuild exon 3162578 3162752 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3162821 3162910 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3163106 3163254 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3163337 3163548 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3163723 3163992 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3164053 3164320 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3164379 3164442 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3164604 3164828 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild exon 3164885 3164955 . - . gene_id "RvY_10974"; transcript_id "RvY_10974.1"; Scaffold005 rebuild transcript 3165505 3165675 . - . gene_id "RvY_10975"; transcript_id "RvY_10975.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3165505 3165675 . - . gene_id "RvY_10975"; transcript_id "RvY_10975.1"; Scaffold005 rebuild transcript 3170950 3173476 . - . gene_id "RvY_10976"; transcript_id "RvY_10976.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3170950 3171158 . - . gene_id "RvY_10976"; transcript_id "RvY_10976.1"; Scaffold005 rebuild exon 3171457 3171586 . - . gene_id "RvY_10976"; transcript_id "RvY_10976.1"; Scaffold005 rebuild exon 3171777 3171971 . - . gene_id "RvY_10976"; transcript_id "RvY_10976.1"; Scaffold005 rebuild exon 3173375 3173476 . - . gene_id "RvY_10976"; transcript_id "RvY_10976.1"; Scaffold005 rebuild transcript 3175716 3176614 . - . gene_id "RvY_10977"; transcript_id "RvY_10977.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold005 rebuild exon 3175716 3176028 . - . gene_id "RvY_10977"; transcript_id "RvY_10977.1"; Scaffold005 rebuild exon 3176119 3176185 . - . gene_id "RvY_10977"; transcript_id "RvY_10977.1"; Scaffold005 rebuild exon 3176260 3176614 . - . gene_id "RvY_10977"; transcript_id "RvY_10977.1"; Scaffold005 rebuild transcript 3180523 3181082 . + . gene_id "RvY_10978"; transcript_id "RvY_10978.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3180523 3180806 . + . gene_id "RvY_10978"; transcript_id "RvY_10978.1"; Scaffold005 rebuild exon 3180821 3181082 . + . gene_id "RvY_10978"; transcript_id "RvY_10978.1"; Scaffold005 rebuild transcript 3181420 3184730 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold005 rebuild exon 3181420 3181637 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3181738 3181864 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3181960 3182154 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3182215 3182265 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3182338 3182490 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3182580 3182654 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3182933 3182971 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3183039 3183082 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3183147 3183451 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3183522 3183588 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild exon 3184337 3184730 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.1"; Scaffold005 rebuild transcript 3181420 3182950 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold005 rebuild exon 3181420 3181637 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; Scaffold005 rebuild exon 3181738 3181864 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; Scaffold005 rebuild exon 3181960 3182154 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; Scaffold005 rebuild exon 3182215 3182490 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; Scaffold005 rebuild exon 3182580 3182654 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; Scaffold005 rebuild exon 3182933 3182950 . - . gene_id "RvY_10979"; transcript_id "RvY_10979.2"; Scaffold005 rebuild transcript 3185868 3200288 . + . gene_id "RvY_10980"; transcript_id "RvY_10980.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3185868 3185969 . + . gene_id "RvY_10980"; transcript_id "RvY_10980.1"; Scaffold005 rebuild exon 3199986 3200288 . + . gene_id "RvY_10980"; transcript_id "RvY_10980.1"; Scaffold005 rebuild transcript 3187195 3187449 . - . gene_id "RvY_10981"; transcript_id "RvY_10981.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3187195 3187449 . - . gene_id "RvY_10981"; transcript_id "RvY_10981.1"; Scaffold005 rebuild transcript 3188119 3189932 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold005 rebuild exon 3188119 3188262 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; Scaffold005 rebuild exon 3188349 3188387 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; Scaffold005 rebuild exon 3188479 3188522 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; Scaffold005 rebuild exon 3188624 3188919 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; Scaffold005 rebuild exon 3188988 3189054 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; Scaffold005 rebuild exon 3189572 3189932 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.1"; Scaffold005 rebuild transcript 3188249 3189932 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.2"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold005 rebuild exon 3188249 3188262 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.2"; Scaffold005 rebuild exon 3188349 3188522 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.2"; Scaffold005 rebuild exon 3188624 3188919 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.2"; Scaffold005 rebuild exon 3188988 3189054 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.2"; Scaffold005 rebuild exon 3189572 3189932 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.2"; Scaffold005 rebuild transcript 3188601 3189932 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.3"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold005 rebuild exon 3188601 3188919 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.3"; Scaffold005 rebuild exon 3188988 3189054 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.3"; Scaffold005 rebuild exon 3189572 3189932 . - . gene_id "RvY_10982"; transcript_id "RvY_10982.3"; Scaffold005 rebuild transcript 3190818 3191327 . - . gene_id "RvY_10983"; transcript_id "RvY_10983.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3190818 3191327 . - . gene_id "RvY_10983"; transcript_id "RvY_10983.1"; Scaffold005 rebuild transcript 3191855 3192566 . - . gene_id "RvY_10984"; transcript_id "RvY_10984.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3191855 3192327 . - . gene_id "RvY_10984"; transcript_id "RvY_10984.1"; Scaffold005 rebuild exon 3192449 3192566 . - . gene_id "RvY_10984"; transcript_id "RvY_10984.1"; Scaffold005 rebuild transcript 3194912 3195590 . - . gene_id "RvY_10985"; transcript_id "RvY_10985.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3194912 3195124 . - . gene_id "RvY_10985"; transcript_id "RvY_10985.1"; Scaffold005 rebuild exon 3195304 3195447 . - . gene_id "RvY_10985"; transcript_id "RvY_10985.1"; Scaffold005 rebuild exon 3195531 3195590 . - . gene_id "RvY_10985"; transcript_id "RvY_10985.1"; Scaffold005 rebuild transcript 3201212 3202379 . - . gene_id "RvY_10986"; transcript_id "RvY_10986.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3201212 3201625 . - . gene_id "RvY_10986"; transcript_id "RvY_10986.1"; Scaffold005 rebuild exon 3201682 3202096 . - . gene_id "RvY_10986"; transcript_id "RvY_10986.1"; Scaffold005 rebuild exon 3202153 3202379 . - . gene_id "RvY_10986"; transcript_id "RvY_10986.1"; Scaffold005 rebuild transcript 3203061 3203345 . - . gene_id "RvY_10987"; transcript_id "RvY_10987.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3203061 3203345 . - . gene_id "RvY_10987"; transcript_id "RvY_10987.1"; Scaffold005 rebuild transcript 3203899 3205805 . - . gene_id "RvY_10988"; transcript_id "RvY_10988.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3203899 3204018 . - . gene_id "RvY_10988"; transcript_id "RvY_10988.1"; Scaffold005 rebuild exon 3205689 3205805 . - . gene_id "RvY_10988"; transcript_id "RvY_10988.1"; Scaffold005 rebuild transcript 3207785 3208297 . - . gene_id "RvY_10989"; transcript_id "RvY_10989.1"; gene_name "INT_Cre"; annotation "hypothetical protein."; CDD "Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region."; Scaffold005 rebuild exon 3207785 3208297 . - . gene_id "RvY_10989"; transcript_id "RvY_10989.1"; Scaffold005 rebuild transcript 3209213 3209859 . + . gene_id "RvY_10990"; transcript_id "RvY_10990.1"; gene_name "(2)CENPB"; annotation "hypothetical protein."; Pfam "(1)[DDE_1] DDE superfamily endonuclease|(2)[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "(2)Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold005 rebuild exon 3209213 3209375 . + . gene_id "RvY_10990"; transcript_id "RvY_10990.1"; Scaffold005 rebuild exon 3209462 3209859 . + . gene_id "RvY_10990"; transcript_id "RvY_10990.1"; Scaffold005 rebuild transcript 3208602 3209298 . + . gene_id "RvY_10990"; transcript_id "RvY_10990.2"; gene_name "(2)CENPB"; annotation "hypothetical protein."; Pfam "(1)[DDE_1] DDE superfamily endonuclease|(2)[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "(2)Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold005 rebuild exon 3208602 3208907 . + . gene_id "RvY_10990"; transcript_id "RvY_10990.2"; Scaffold005 rebuild exon 3209047 3209298 . + . gene_id "RvY_10990"; transcript_id "RvY_10990.2"; Scaffold005 rebuild transcript 3210572 3211304 . - . gene_id "RvY_10991"; transcript_id "RvY_10991.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3210572 3210712 . - . gene_id "RvY_10991"; transcript_id "RvY_10991.1"; Scaffold005 rebuild exon 3211155 3211304 . - . gene_id "RvY_10991"; transcript_id "RvY_10991.1"; Scaffold005 rebuild transcript 3213214 3213390 . - . gene_id "RvY_10992"; transcript_id "RvY_10992.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3213214 3213390 . - . gene_id "RvY_10992"; transcript_id "RvY_10992.1"; Scaffold005 rebuild transcript 3217432 3218886 . - . gene_id "RvY_10993"; transcript_id "RvY_10993.1"; gene_name "COG2133"; annotation "hypothetical protein."; Pfam "[GSDH] Glucose / Sorbosone dehydrogenase"; CDD "Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]"; Scaffold005 rebuild exon 3217432 3218177 . - . gene_id "RvY_10993"; transcript_id "RvY_10993.1"; Scaffold005 rebuild exon 3218358 3218886 . - . gene_id "RvY_10993"; transcript_id "RvY_10993.1"; Scaffold005 rebuild transcript 3220259 3223075 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; gene_name "PBP1_NPR_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase."; Scaffold005 rebuild exon 3220259 3220391 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3220452 3220527 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3220591 3220738 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3221048 3221278 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3221358 3221501 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3221619 3221699 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3221808 3221846 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3221947 3221990 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3222050 3222363 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3222484 3222508 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3222583 3222624 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild exon 3222742 3223075 . - . gene_id "RvY_10994"; transcript_id "RvY_10994.1"; Scaffold005 rebuild transcript 3224760 3228201 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; gene_name "TLDc"; annotation "hypothetical protein."; Pfam "[RabGAP-TBC] Rab-GTPase-TBC domain|[TLD]"; CDD "domain in TBC and LysM domain containing proteins."; Scaffold005 rebuild exon 3224760 3225099 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3225163 3225278 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3225609 3225815 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3225877 3225984 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3226068 3226158 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3226646 3226953 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3227477 3227683 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild exon 3227893 3228201 . + . gene_id "RvY_10995"; transcript_id "RvY_10995.1"; Scaffold005 rebuild transcript 3229233 3232611 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; gene_name "ppa"; annotation "Inorganic pyrophosphatase"; Pfam "[Pyrophosphatase] Inorganic pyrophosphatase|[Ran_BP1] RanBP1 domain"; EC "EC3.6.1.1"; KO "K01507"; similar_genes "IPYR_DROME(e-value:1.3e-76;bit-score:284.0)"; Scaffold005 rebuild exon 3229233 3229484 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; Scaffold005 rebuild exon 3229631 3229776 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; Scaffold005 rebuild exon 3229846 3229954 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; Scaffold005 rebuild exon 3230158 3230571 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; Scaffold005 rebuild exon 3230780 3231297 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; Scaffold005 rebuild exon 3232071 3232611 . - . gene_id "RvY_10996"; transcript_id "RvY_10996.1"; Scaffold005 rebuild transcript 3233331 3234372 . - . gene_id "RvY_10997"; transcript_id "RvY_10997.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold005 rebuild exon 3233331 3233737 . - . gene_id "RvY_10997"; transcript_id "RvY_10997.1"; Scaffold005 rebuild exon 3233816 3233945 . - . gene_id "RvY_10997"; transcript_id "RvY_10997.1"; Scaffold005 rebuild exon 3234025 3234372 . - . gene_id "RvY_10997"; transcript_id "RvY_10997.1"; Scaffold005 rebuild transcript 3235333 3235707 . + . gene_id "RvY_10998"; transcript_id "RvY_10998.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3235333 3235707 . + . gene_id "RvY_10998"; transcript_id "RvY_10998.1"; Scaffold005 rebuild transcript 3235421 3235738 . + . gene_id "RvY_10998"; transcript_id "RvY_10998.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3235421 3235738 . + . gene_id "RvY_10998"; transcript_id "RvY_10998.2"; Scaffold005 rebuild transcript 3240403 3241212 . - . gene_id "RvY_10999"; transcript_id "RvY_10999.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3240403 3240513 . - . gene_id "RvY_10999"; transcript_id "RvY_10999.1"; Scaffold005 rebuild exon 3241015 3241212 . - . gene_id "RvY_10999"; transcript_id "RvY_10999.1"; Scaffold005 rebuild transcript 3252034 3252300 . - . gene_id "RvY_11000"; transcript_id "RvY_11000.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3252034 3252300 . - . gene_id "RvY_11000"; transcript_id "RvY_11000.1"; Scaffold005 rebuild transcript 3257239 3258260 . - . gene_id "RvY_11001"; transcript_id "RvY_11001.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3257239 3257316 . - . gene_id "RvY_11001"; transcript_id "RvY_11001.1"; Scaffold005 rebuild exon 3257886 3258260 . - . gene_id "RvY_11001"; transcript_id "RvY_11001.1"; Scaffold005 rebuild transcript 3258713 3258928 . + . gene_id "RvY_11002"; transcript_id "RvY_11002.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3258713 3258928 . + . gene_id "RvY_11002"; transcript_id "RvY_11002.1"; Scaffold005 rebuild transcript 3260771 3262069 . - . gene_id "RvY_11003"; transcript_id "RvY_11003.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3260771 3262069 . - . gene_id "RvY_11003"; transcript_id "RvY_11003.1"; Scaffold005 rebuild transcript 3262598 3263181 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3262598 3262738 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.1"; Scaffold005 rebuild exon 3262865 3262983 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.1"; Scaffold005 rebuild exon 3263097 3263181 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.1"; Scaffold005 rebuild transcript 3262598 3263038 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3262598 3262738 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.2"; Scaffold005 rebuild exon 3262865 3263038 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.2"; Scaffold005 rebuild transcript 3262598 3262939 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3262598 3262738 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.3"; Scaffold005 rebuild exon 3262865 3262939 . - . gene_id "RvY_11004"; transcript_id "RvY_11004.3"; Scaffold005 rebuild transcript 3264151 3267171 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3264151 3264361 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3264421 3264638 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3264901 3265221 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3265484 3265709 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3265777 3265978 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3266291 3266403 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3266468 3266700 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild exon 3266947 3267171 . - . gene_id "RvY_11005"; transcript_id "RvY_11005.1"; Scaffold005 rebuild transcript 3267899 3282186 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; gene_name "BP28CT"; annotation "putative HEAT repeat-containing protein 1"; Pfam "[BP28CT] BP28CT (NUC211) domain|[U3snoRNP10] U3 small nucleolar RNA-associated protein 10"; CDD "BP28CT (NUC211) domain. This C terminal domain is found in BAP28-like nucleolar proteins."; KO "K14550"; similar_genes "HEAT1_DANRE(e-value:5.9e-26;bit-score:115.0)"; Scaffold005 rebuild exon 3267899 3268138 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3268519 3269109 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3269482 3269951 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3270303 3270637 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3270934 3271226 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3273755 3274036 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3274375 3274627 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3275016 3275506 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3276394 3276827 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3278456 3278654 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3278938 3279375 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3279639 3279860 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3279933 3280236 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3280307 3280654 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3280725 3281370 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild exon 3281679 3282186 . - . gene_id "RvY_11006"; transcript_id "RvY_11006.1"; Scaffold005 rebuild transcript 3272444 3272901 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3272444 3272619 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.1"; Scaffold005 rebuild exon 3272847 3272901 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.1"; Scaffold005 rebuild transcript 3272569 3273108 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.2"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3272569 3272619 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.2"; Scaffold005 rebuild exon 3272847 3272990 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.2"; Scaffold005 rebuild exon 3273100 3273108 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.2"; Scaffold005 rebuild transcript 3272569 3272999 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.3"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3272569 3272619 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.3"; Scaffold005 rebuild exon 3272847 3272999 . + . gene_id "RvY_11007"; transcript_id "RvY_11007.3"; Scaffold005 rebuild transcript 3277623 3278054 . + . gene_id "RvY_11008"; transcript_id "RvY_11008.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3277623 3278054 . + . gene_id "RvY_11008"; transcript_id "RvY_11008.1"; Scaffold005 rebuild transcript 3283201 3283713 . - . gene_id "RvY_11009"; transcript_id "RvY_11009.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold005 rebuild exon 3283201 3283462 . - . gene_id "RvY_11009"; transcript_id "RvY_11009.1"; Scaffold005 rebuild exon 3283685 3283713 . - . gene_id "RvY_11009"; transcript_id "RvY_11009.1"; Scaffold005 rebuild transcript 3283877 3284101 . - . gene_id "RvY_11010"; transcript_id "RvY_11010.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3283877 3284101 . - . gene_id "RvY_11010"; transcript_id "RvY_11010.1"; Scaffold005 rebuild transcript 3284214 3284506 . - . gene_id "RvY_11011"; transcript_id "RvY_11011.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3284214 3284302 . - . gene_id "RvY_11011"; transcript_id "RvY_11011.1"; Scaffold005 rebuild exon 3284422 3284506 . - . gene_id "RvY_11011"; transcript_id "RvY_11011.1"; Scaffold005 rebuild transcript 3284870 3285474 . - . gene_id "RvY_11012"; transcript_id "RvY_11012.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3284870 3285253 . - . gene_id "RvY_11012"; transcript_id "RvY_11012.1"; Scaffold005 rebuild exon 3285367 3285474 . - . gene_id "RvY_11012"; transcript_id "RvY_11012.1"; Scaffold005 rebuild transcript 3286223 3286555 . - . gene_id "RvY_11013"; transcript_id "RvY_11013.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3286223 3286386 . - . gene_id "RvY_11013"; transcript_id "RvY_11013.1"; Scaffold005 rebuild exon 3286477 3286555 . - . gene_id "RvY_11013"; transcript_id "RvY_11013.1"; Scaffold005 rebuild transcript 3293789 3294639 . + . gene_id "RvY_11014"; transcript_id "RvY_11014.1"; annotation "hypothetical protein."; Scaffold005 rebuild exon 3293789 3294310 . + . gene_id "RvY_11014"; transcript_id "RvY_11014.1"; Scaffold005 rebuild exon 3294434 3294639 . + . gene_id "RvY_11014"; transcript_id "RvY_11014.1"; Scaffold006 rebuild transcript 868 4472 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; gene_name "ARRB"; annotation "Beta-arrestin-1"; Pfam "[Arrestin_N] Arrestin (or S-antigen), N-terminal domain|[Arrestin_C] Arrestin (or S-antigen), C-terminal domain"; KO "K04439"; similar_genes "ARRB1_BOVIN(e-value:2.6e-75;bit-score:279.0)"; Scaffold006 rebuild exon 868 887 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 968 998 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 1091 1151 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 1855 1997 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 2423 2521 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 2660 2719 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 2793 2860 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 2958 3093 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 3194 3278 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 3403 3475 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 3558 3701 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 3764 3850 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 3980 4126 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild exon 4370 4472 . + . gene_id "RvY_11015"; transcript_id "RvY_11015.1"; Scaffold006 rebuild transcript 5002 5793 . + . gene_id "RvY_11016"; transcript_id "RvY_11016.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 5002 5793 . + . gene_id "RvY_11016"; transcript_id "RvY_11016.1"; Scaffold006 rebuild transcript 4812 5339 . + . gene_id "RvY_11016"; transcript_id "RvY_11016.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 4812 5339 . + . gene_id "RvY_11016"; transcript_id "RvY_11016.2"; Scaffold006 rebuild transcript 4821 6194 . - . gene_id "RvY_11017"; transcript_id "RvY_11017.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 4821 6194 . - . gene_id "RvY_11017"; transcript_id "RvY_11017.1"; Scaffold006 rebuild transcript 6910 12064 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; gene_name "CRM1"; annotation "Exportin-1"; Pfam "[Xpo1] Exportin 1-like protein|[IBN_N] Importin-beta N-terminal domain|[CRM1_C] CRM1 C terminal"; CDD "Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]"; KO "K14290"; similar_genes "XPO1_HUMAN(e-value:1.2e-136;bit-score:483.0)"; Scaffold006 rebuild exon 6910 7204 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 7331 7437 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 7528 7643 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 7721 7835 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 7926 8045 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 8139 8276 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 8381 8509 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 8628 9012 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 9183 9364 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 9439 9595 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 9708 9871 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 9958 10197 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 10276 10461 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 10557 10727 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 10796 10988 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 11114 11251 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 11335 11491 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 11569 11665 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild exon 11921 12064 . + . gene_id "RvY_11018"; transcript_id "RvY_11018.1"; Scaffold006 rebuild transcript 14053 16719 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; gene_name "MgtE"; annotation "putative Solute carrier family 41 member 2"; Pfam "[MgtE] Divalent cation transporter"; CDD "Divalent cation transporter. This region is the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers. Members of this family probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding (Bateman A unpubl.)"; KO "K15122"; similar_genes "S41A2_MACFA(e-value:2.7e-28;bit-score:123.0)"; Scaffold006 rebuild exon 14053 14541 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 14626 14855 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 14960 15057 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 15403 15473 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 15548 15623 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 15803 16042 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 16123 16470 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild exon 16598 16719 . + . gene_id "RvY_11019"; transcript_id "RvY_11019.1"; Scaffold006 rebuild transcript 16927 18913 . - . gene_id "RvY_11020"; transcript_id "RvY_11020.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 16927 17003 . - . gene_id "RvY_11020"; transcript_id "RvY_11020.1"; Scaffold006 rebuild exon 17078 17341 . - . gene_id "RvY_11020"; transcript_id "RvY_11020.1"; Scaffold006 rebuild exon 17514 17899 . - . gene_id "RvY_11020"; transcript_id "RvY_11020.1"; Scaffold006 rebuild exon 18180 18913 . - . gene_id "RvY_11020"; transcript_id "RvY_11020.1"; Scaffold006 rebuild transcript 18986 19519 . + . gene_id "RvY_11021"; transcript_id "RvY_11021.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 18986 19519 . + . gene_id "RvY_11021"; transcript_id "RvY_11021.1"; Scaffold006 rebuild transcript 20344 24333 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; annotation "hypothetical protein."; Pfam "[Prominin]"; Scaffold006 rebuild exon 20344 20602 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 20670 20755 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 20814 20880 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 20940 21060 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 21118 21305 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 21412 21731 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 21816 21942 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 22017 22170 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 22253 22405 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 22465 22603 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 22670 22987 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 23281 23454 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 23520 23666 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 23768 23836 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 23922 24011 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 24071 24244 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild exon 24325 24333 . + . gene_id "RvY_11022"; transcript_id "RvY_11022.1"; Scaffold006 rebuild transcript 25428 27817 . + . gene_id "RvY_11023"; transcript_id "RvY_11023.1"; gene_name "FOSLN"; annotation "fos-like antigen, invertebrate"; Pfam "[bZIP_1] bZIP transcription factor"; CDD "basic region leucin zipper."; KO "K09031"; similar_genes "FOSL_DROER(e-value:7.6e-24;bit-score:108.0)"; Scaffold006 rebuild exon 25428 25607 . + . gene_id "RvY_11023"; transcript_id "RvY_11023.1"; Scaffold006 rebuild exon 26456 26845 . + . gene_id "RvY_11023"; transcript_id "RvY_11023.1"; Scaffold006 rebuild exon 26933 27040 . + . gene_id "RvY_11023"; transcript_id "RvY_11023.1"; Scaffold006 rebuild exon 27139 27583 . + . gene_id "RvY_11023"; transcript_id "RvY_11023.1"; Scaffold006 rebuild exon 27690 27817 . + . gene_id "RvY_11023"; transcript_id "RvY_11023.1"; Scaffold006 rebuild transcript 28529 30995 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold006 rebuild exon 28529 28658 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild exon 28730 29062 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild exon 29226 29431 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild exon 29510 29720 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild exon 29886 30088 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild exon 30181 30329 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild exon 30842 30995 . - . gene_id "RvY_11024"; transcript_id "RvY_11024.1"; Scaffold006 rebuild transcript 32155 32373 . - . gene_id "RvY_11025"; transcript_id "RvY_11025.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 32155 32373 . - . gene_id "RvY_11025"; transcript_id "RvY_11025.1"; Scaffold006 rebuild transcript 32416 33472 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; gene_name "ADF"; annotation "hypothetical protein."; Pfam "[Cofilin_ADF] Cofilin/tropomyosin-type actin-binding protein"; CDD "Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers."; similar_genes "GMFB_HUMAN(e-value:1.3e-06;bit-score:51.0)"; Scaffold006 rebuild exon 32416 32418 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild exon 32668 32709 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild exon 32787 32841 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild exon 32908 33007 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild exon 33099 33181 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild exon 33257 33330 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild exon 33404 33472 . + . gene_id "RvY_11026"; transcript_id "RvY_11026.1"; Scaffold006 rebuild transcript 34142 36041 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 34142 34402 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild exon 34642 34717 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild exon 34881 34959 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild exon 35080 35150 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild exon 35252 35304 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild exon 35365 35493 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild exon 35937 36041 . - . gene_id "RvY_11027"; transcript_id "RvY_11027.1"; Scaffold006 rebuild transcript 39542 40728 . - . gene_id "RvY_11028"; transcript_id "RvY_11028.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 39542 39791 . - . gene_id "RvY_11028"; transcript_id "RvY_11028.1"; Scaffold006 rebuild exon 40523 40728 . - . gene_id "RvY_11028"; transcript_id "RvY_11028.1"; Scaffold006 rebuild transcript 41432 41848 . + . gene_id "RvY_11029"; transcript_id "RvY_11029.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 41432 41848 . + . gene_id "RvY_11029"; transcript_id "RvY_11029.1"; Scaffold006 rebuild transcript 41839 42147 . + . gene_id "RvY_11029"; transcript_id "RvY_11029.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 41839 42147 . + . gene_id "RvY_11029"; transcript_id "RvY_11029.2"; Scaffold006 rebuild transcript 43881 46641 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; gene_name "2A0111"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "Oxalate/Formate Antiporter."; Scaffold006 rebuild exon 43881 44366 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 44424 44479 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 44770 44947 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 45055 45180 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 45249 45670 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 45769 45918 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 45984 46169 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 46253 46346 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild exon 46429 46641 . - . gene_id "RvY_11030"; transcript_id "RvY_11030.1"; Scaffold006 rebuild transcript 48706 52559 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[FCH] Fes/CIP4, and EFC/F-BAR homology domain|[SH3_1] SH3 domain"; similar_genes "FBP1L_XENLA(e-value:1.0e-10;bit-score:65.0)"; Scaffold006 rebuild exon 48706 48884 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 48979 49276 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 49336 49584 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 49651 49857 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 49919 50194 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 50273 50377 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 50619 50880 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 50949 51064 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild exon 52533 52559 . - . gene_id "RvY_11031"; transcript_id "RvY_11031.1"; Scaffold006 rebuild transcript 52973 53443 . - . gene_id "RvY_11032"; transcript_id "RvY_11032.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 52973 53443 . - . gene_id "RvY_11032"; transcript_id "RvY_11032.1"; Scaffold006 rebuild transcript 53880 59285 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; gene_name "vigilin_like_KH"; annotation "Vigilin"; Pfam "[KH_2] KH domain|[KH_3] KH domain|[KH_1] KH domain"; CDD "K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA."; similar_genes "VIGLN_HUMAN(e-value:2.6e-62;bit-score:236.0)"; Scaffold006 rebuild exon 53880 54158 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 54221 54442 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 54512 54739 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 54809 55048 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 55129 55317 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 55374 55706 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 55841 56187 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 56566 56779 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 56881 56967 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 57031 57386 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 57452 57743 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 57943 58149 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 58234 58413 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 58477 58835 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 58904 59012 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild exon 59076 59285 . - . gene_id "RvY_11033"; transcript_id "RvY_11033.1"; Scaffold006 rebuild transcript 64177 64570 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.1"; gene_name "(2,5)HMG_box"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "(2,5)HMG (high mobility group) box."; similar_genes "(2,5)HMGB3_CHICK(e-value:4.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 64177 64304 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.1"; Scaffold006 rebuild exon 64396 64570 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.1"; Scaffold006 rebuild transcript 63877 64283 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.2"; gene_name "(2,5)HMG_box"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "(2,5)HMG (high mobility group) box."; similar_genes "(2,5)HMGB3_CHICK(e-value:4.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 63877 63884 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.2"; Scaffold006 rebuild exon 64010 64283 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.2"; Scaffold006 rebuild transcript 63903 64283 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.5"; gene_name "(2,5)HMG_box"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "(2,5)HMG (high mobility group) box."; similar_genes "(2,5)HMGB3_CHICK(e-value:4.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 63903 64283 . - . gene_id "RvY_11034"; transcript_id "RvY_11034.5"; Scaffold006 rebuild transcript 65669 69708 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; gene_name "ENAH"; annotation "putative Protein enabled homolog"; Pfam "[WH1]|[VASP_tetra] VASP tetramerisation domain"; CDD "Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains."; KO "K05746"; similar_genes "ENAH_MOUSE(e-value:8.7e-42;bit-score:168.0)"; Scaffold006 rebuild exon 65669 65700 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 65770 65954 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 66015 66162 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 66308 66393 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 66462 66975 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 67137 67258 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 67327 67528 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 67988 68138 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 68362 68445 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 68970 69103 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 69187 69236 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild exon 69680 69708 . - . gene_id "RvY_11035"; transcript_id "RvY_11035.1"; Scaffold006 rebuild transcript 70478 70783 . - . gene_id "RvY_11036"; transcript_id "RvY_11036.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 70478 70783 . - . gene_id "RvY_11036"; transcript_id "RvY_11036.1"; Scaffold006 rebuild transcript 71417 71614 . - . gene_id "RvY_11037"; transcript_id "RvY_11037.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 71417 71614 . - . gene_id "RvY_11037"; transcript_id "RvY_11037.1"; Scaffold006 rebuild transcript 71673 72860 . + . gene_id "RvY_11038"; transcript_id "RvY_11038.1"; annotation "putative Mitochondrial carnitine/acylcarnitine carrier protein CACL"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15109"; similar_genes "MCATL_MOUSE(e-value:1.5e-37;bit-score:154.0)"; Scaffold006 rebuild exon 71673 71741 . + . gene_id "RvY_11038"; transcript_id "RvY_11038.1"; Scaffold006 rebuild exon 71873 72290 . + . gene_id "RvY_11038"; transcript_id "RvY_11038.1"; Scaffold006 rebuild exon 72412 72860 . + . gene_id "RvY_11038"; transcript_id "RvY_11038.1"; Scaffold006 rebuild transcript 74624 74815 . - . gene_id "RvY_11039"; transcript_id "RvY_11039.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 74624 74815 . - . gene_id "RvY_11039"; transcript_id "RvY_11039.1"; Scaffold006 rebuild transcript 74886 77016 . + . gene_id "RvY_11040"; transcript_id "RvY_11040.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 74886 75131 . + . gene_id "RvY_11040"; transcript_id "RvY_11040.1"; Scaffold006 rebuild exon 76534 76639 . + . gene_id "RvY_11040"; transcript_id "RvY_11040.1"; Scaffold006 rebuild exon 76904 77016 . + . gene_id "RvY_11040"; transcript_id "RvY_11040.1"; Scaffold006 rebuild transcript 77781 78369 . + . gene_id "RvY_11041"; transcript_id "RvY_11041.1"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold006 rebuild exon 77781 77821 . + . gene_id "RvY_11041"; transcript_id "RvY_11041.1"; Scaffold006 rebuild exon 77915 78103 . + . gene_id "RvY_11041"; transcript_id "RvY_11041.1"; Scaffold006 rebuild exon 78168 78369 . + . gene_id "RvY_11041"; transcript_id "RvY_11041.1"; Scaffold006 rebuild transcript 79675 81992 . + . gene_id "RvY_11042"; transcript_id "RvY_11042.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 79675 79984 . + . gene_id "RvY_11042"; transcript_id "RvY_11042.1"; Scaffold006 rebuild exon 81844 81992 . + . gene_id "RvY_11042"; transcript_id "RvY_11042.1"; Scaffold006 rebuild transcript 83422 85700 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; annotation "putative Four and a half LIM domains protein 1"; Pfam "[PET] PET Domain|[LIM]"; similar_genes "FHL1_MOUSE(e-value:6.5e-38;bit-score:155.0)"; Scaffold006 rebuild exon 83422 83566 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; Scaffold006 rebuild exon 83867 84397 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; Scaffold006 rebuild exon 84461 84762 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; Scaffold006 rebuild exon 84850 84987 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; Scaffold006 rebuild exon 85057 85228 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; Scaffold006 rebuild exon 85351 85700 . + . gene_id "RvY_11043"; transcript_id "RvY_11043.1"; Scaffold006 rebuild transcript 86662 89019 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; annotation "hypothetical protein."; similar_genes "SLO_DROME(e-value:7.3e-18;bit-score:88.0)"; Scaffold006 rebuild exon 86662 86786 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 86862 87465 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 87545 87656 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 87828 87979 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 88045 88218 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 88302 88393 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 88465 88578 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild exon 88650 89019 . + . gene_id "RvY_11044"; transcript_id "RvY_11044.1"; Scaffold006 rebuild transcript 91703 103996 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; annotation "WD repeat and FYVE domain-containing protein 3"; Pfam "[WD40] WD domain, G-beta repeat|[Beach] Beige/BEACH domain"; similar_genes "WDFY3_MOUSE(e-value:1.9e-86;bit-score:316.0)"; Scaffold006 rebuild exon 91703 91710 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 91771 92205 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 92270 92876 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 93189 93385 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 93449 94010 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 94077 94557 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 94689 94866 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 94942 95278 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 95341 95739 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 96006 96379 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 96446 96901 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 96965 97460 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 97553 98072 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 98526 98767 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 98834 99388 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 99455 99775 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 99851 100118 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 100186 100488 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 100569 100783 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 100857 101089 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 101155 101494 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 101569 102031 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 102147 102391 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 102475 102812 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 102882 103074 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 103145 103389 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 103534 103657 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild exon 103754 103996 . - . gene_id "RvY_11045"; transcript_id "RvY_11045.1"; Scaffold006 rebuild transcript 107834 110658 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; gene_name "RICTOR"; annotation "rapamycin-insensitive companion of mTOR"; KO "K08267"; Scaffold006 rebuild exon 107834 108001 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 108083 108504 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 108559 109004 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 109085 109471 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 109533 109792 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 109852 110237 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 110314 110452 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild exon 110530 110658 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.1"; Scaffold006 rebuild transcript 104942 108067 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; gene_name "RICTOR"; annotation "rapamycin-insensitive companion of mTOR"; KO "K08267"; Scaffold006 rebuild exon 104942 104984 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 105080 105130 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 105346 105502 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 105569 105700 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 105773 105960 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 106040 106206 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 106263 106481 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 106546 106618 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 106679 106897 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 107071 107546 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild exon 107609 108067 . + . gene_id "RvY_11046"; transcript_id "RvY_11046.2"; Scaffold006 rebuild transcript 111631 115255 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; gene_name "PDZ_signaling"; annotation "hypothetical protein."; Pfam "[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; Scaffold006 rebuild exon 111631 111786 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; Scaffold006 rebuild exon 111854 112177 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; Scaffold006 rebuild exon 113220 113631 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; Scaffold006 rebuild exon 114820 114934 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; Scaffold006 rebuild exon 115008 115047 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; Scaffold006 rebuild exon 115130 115255 . - . gene_id "RvY_11047"; transcript_id "RvY_11047.1"; Scaffold006 rebuild transcript 117623 117841 . + . gene_id "RvY_11048"; transcript_id "RvY_11048.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 117623 117841 . + . gene_id "RvY_11048"; transcript_id "RvY_11048.1"; Scaffold006 rebuild transcript 118485 118829 . + . gene_id "RvY_11049"; transcript_id "RvY_11049.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 118485 118829 . + . gene_id "RvY_11049"; transcript_id "RvY_11049.1"; Scaffold006 rebuild transcript 118983 120372 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; gene_name "SCP1"; annotation "hypothetical protein."; Pfam "[Calponin] Calponin family repeat|[CH] Calponin homology (CH) domain"; CDD "Calponin [Cytoskeleton]"; similar_genes "MYPH_ECHGR(e-value:1.0e-06;bit-score:51.0)"; Scaffold006 rebuild exon 118983 119029 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; Scaffold006 rebuild exon 119209 119284 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; Scaffold006 rebuild exon 119423 119476 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; Scaffold006 rebuild exon 119584 119788 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; Scaffold006 rebuild exon 119891 120015 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; Scaffold006 rebuild exon 120322 120372 . - . gene_id "RvY_11050"; transcript_id "RvY_11050.1"; Scaffold006 rebuild transcript 122323 124438 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; gene_name "NR1N"; annotation "putative Ecdysone-induced protein 78C"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily. The ligand binding domain (LBD) of Drosophila ecdysone-induced protein 78 (E78) like: Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. Two isoforms of E78, E78A and E78B, are expressed from two nested transcription units. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. SmE78 may be involved in transduction of an ecdysone signal in S. mansoni, consistent with its function in Drosophila. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, E78-like receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; KO "K08701"; similar_genes "E78C_DROME(e-value:2.0e-45;bit-score:180.0)"; Scaffold006 rebuild exon 122323 122376 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 122449 122708 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 122782 122887 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 122946 123269 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 123334 123653 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 123714 123855 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 123926 124053 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild exon 124117 124438 . - . gene_id "RvY_11051"; transcript_id "RvY_11051.1"; Scaffold006 rebuild transcript 125116 125418 . + . gene_id "RvY_11052"; transcript_id "RvY_11052.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 125116 125418 . + . gene_id "RvY_11052"; transcript_id "RvY_11052.1"; Scaffold006 rebuild transcript 127511 127814 . + . gene_id "RvY_11053"; transcript_id "RvY_11053.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 127511 127589 . + . gene_id "RvY_11053"; transcript_id "RvY_11053.1"; Scaffold006 rebuild exon 127660 127814 . + . gene_id "RvY_11053"; transcript_id "RvY_11053.1"; Scaffold006 rebuild transcript 128545 129213 . + . gene_id "RvY_11054"; transcript_id "RvY_11054.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 128545 128575 . + . gene_id "RvY_11054"; transcript_id "RvY_11054.1"; Scaffold006 rebuild exon 128825 129213 . + . gene_id "RvY_11054"; transcript_id "RvY_11054.1"; Scaffold006 rebuild transcript 130155 130316 . - . gene_id "RvY_11055"; transcript_id "RvY_11055.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 130155 130316 . - . gene_id "RvY_11055"; transcript_id "RvY_11055.1"; Scaffold006 rebuild transcript 130999 131535 . - . gene_id "RvY_11056"; transcript_id "RvY_11056.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 130999 131102 . - . gene_id "RvY_11056"; transcript_id "RvY_11056.1"; Scaffold006 rebuild exon 131202 131535 . - . gene_id "RvY_11056"; transcript_id "RvY_11056.1"; Scaffold006 rebuild transcript 132021 134272 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; gene_name "C2_1"; annotation "Synaptotagmin 1"; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; KO "K15290"; similar_genes "SY65_DROME(e-value:3.1e-116;bit-score:415.0)"; Scaffold006 rebuild exon 132021 132447 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 132512 132696 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 132781 132909 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 132977 133144 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 133201 133374 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 133494 133611 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 133863 133996 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild exon 134072 134272 . + . gene_id "RvY_11057"; transcript_id "RvY_11057.1"; Scaffold006 rebuild transcript 138468 141522 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; gene_name "HLH"; annotation "putative Transcription factor E2-alpha"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "helix loop helix domain."; KO "K15603"; similar_genes "TFE2_XENLA(e-value:4.0e-29;bit-score:126.0)"; Scaffold006 rebuild exon 138468 138549 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 139039 139367 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 139452 139584 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 139691 139989 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 140074 140254 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 140334 140480 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 140546 140723 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 140790 140879 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild exon 141024 141522 . + . gene_id "RvY_11058"; transcript_id "RvY_11058.1"; Scaffold006 rebuild transcript 141621 141803 . - . gene_id "RvY_11059"; transcript_id "RvY_11059.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 141621 141803 . - . gene_id "RvY_11059"; transcript_id "RvY_11059.1"; Scaffold006 rebuild transcript 141854 142225 . + . gene_id "RvY_11060"; transcript_id "RvY_11060.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 141854 142225 . + . gene_id "RvY_11060"; transcript_id "RvY_11060.1"; Scaffold006 rebuild transcript 142769 143940 . + . gene_id "RvY_11061"; transcript_id "RvY_11061.1"; gene_name "K01166"; annotation "ribonuclease T2 [EC:3.1.27.1]"; Pfam "[Ribonuclease_T2] Ribonuclease T2 family"; CDD "Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of ""self"" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members."; EC "EC3.1.27.1"; KO "K01166"; Scaffold006 rebuild exon 142769 143062 . + . gene_id "RvY_11061"; transcript_id "RvY_11061.1"; Scaffold006 rebuild exon 143365 143940 . + . gene_id "RvY_11061"; transcript_id "RvY_11061.1"; Scaffold006 rebuild transcript 145483 148598 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 145483 145725 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 145805 145899 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 146001 146125 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 146335 146449 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 146529 146866 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 147184 147456 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 147513 147714 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 147813 147959 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 148056 148214 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 148337 148385 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild exon 148551 148598 . - . gene_id "RvY_11062"; transcript_id "RvY_11062.1"; Scaffold006 rebuild transcript 149941 153150 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; gene_name "SERBP1"; annotation "plasminogen activator inhibitor 1 RNA-binding protein"; Pfam "[HABP4_PAI-RBP1] Hyaluronan / mRNA binding family"; EC "EC2.1.1.-"; KO "K13199"; similar_genes "FBRL_DROME(e-value:5.8e-07;bit-score:52.0)"; Scaffold006 rebuild exon 149941 149972 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 150068 150471 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 151055 151373 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 151577 151837 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 151906 152018 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 152093 152343 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 152408 152586 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild exon 152853 153150 . + . gene_id "RvY_11063"; transcript_id "RvY_11063.1"; Scaffold006 rebuild transcript 155912 157153 . - . gene_id "RvY_11064"; transcript_id "RvY_11064.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 155912 156042 . - . gene_id "RvY_11064"; transcript_id "RvY_11064.1"; Scaffold006 rebuild exon 157087 157153 . - . gene_id "RvY_11064"; transcript_id "RvY_11064.1"; Scaffold006 rebuild transcript 157815 159161 . - . gene_id "RvY_11065"; transcript_id "RvY_11065.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 157815 157888 . - . gene_id "RvY_11065"; transcript_id "RvY_11065.1"; Scaffold006 rebuild exon 159029 159161 . - . gene_id "RvY_11065"; transcript_id "RvY_11065.1"; Scaffold006 rebuild transcript 159773 161487 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.1"; annotation "hypothetical protein."; Pfam "[DuoxA] Dual oxidase maturation factor"; Scaffold006 rebuild exon 159773 159937 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.1"; Scaffold006 rebuild exon 160025 160217 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.1"; Scaffold006 rebuild exon 160302 160539 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.1"; Scaffold006 rebuild exon 160604 160815 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.1"; Scaffold006 rebuild exon 160880 161487 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.1"; Scaffold006 rebuild transcript 159773 160844 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.2"; annotation "hypothetical protein."; Pfam "[DuoxA] Dual oxidase maturation factor"; Scaffold006 rebuild exon 159773 159937 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.2"; Scaffold006 rebuild exon 160025 160217 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.2"; Scaffold006 rebuild exon 160302 160539 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.2"; Scaffold006 rebuild exon 160604 160844 . + . gene_id "RvY_11066"; transcript_id "RvY_11066.2"; Scaffold006 rebuild transcript 161798 165139 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; annotation "hypothetical protein."; Pfam "(1)[Clathrin] Region in Clathrin and VPS|[CNH]|(1)[Vps39_2] Vacuolar sorting protein 39 domain 2"; Scaffold006 rebuild exon 161798 161894 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 161963 162381 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 162445 162654 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 162711 162900 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 162976 163333 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 163393 163699 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 163762 164289 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 164417 164509 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 164575 164673 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 164751 164844 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 164903 164955 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild exon 165068 165139 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.1"; Scaffold006 rebuild transcript 162424 164598 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; annotation "hypothetical protein."; Pfam "(1)[Clathrin] Region in Clathrin and VPS|[CNH]|(1)[Vps39_2] Vacuolar sorting protein 39 domain 2"; Scaffold006 rebuild exon 162424 162654 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild exon 162711 162900 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild exon 162976 163333 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild exon 163393 163699 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild exon 163762 164289 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild exon 164417 164509 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild exon 164575 164598 . - . gene_id "RvY_11067"; transcript_id "RvY_11067.2"; Scaffold006 rebuild transcript 168827 169918 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 168827 169278 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.1"; Scaffold006 rebuild exon 169475 169736 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.1"; Scaffold006 rebuild exon 169838 169918 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.1"; Scaffold006 rebuild transcript 168830 169918 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 168830 169278 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.2"; Scaffold006 rebuild exon 169475 169736 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.2"; Scaffold006 rebuild exon 169838 169918 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.2"; Scaffold006 rebuild transcript 168833 169918 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 168833 169278 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.3"; Scaffold006 rebuild exon 169475 169736 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.3"; Scaffold006 rebuild exon 169838 169918 . + . gene_id "RvY_11068"; transcript_id "RvY_11068.3"; Scaffold006 rebuild transcript 170206 176305 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 170206 170665 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild exon 170726 171162 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild exon 171468 171598 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild exon 172224 172760 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild exon 174723 175312 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild exon 175519 176116 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild exon 176188 176305 . - . gene_id "RvY_11069"; transcript_id "RvY_11069.1"; Scaffold006 rebuild transcript 171431 173319 . + . gene_id "RvY_11070"; transcript_id "RvY_11070.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 171431 171620 . + . gene_id "RvY_11070"; transcript_id "RvY_11070.1"; Scaffold006 rebuild exon 173063 173140 . + . gene_id "RvY_11070"; transcript_id "RvY_11070.1"; Scaffold006 rebuild exon 173216 173319 . + . gene_id "RvY_11070"; transcript_id "RvY_11070.1"; Scaffold006 rebuild transcript 176537 178455 . - . gene_id "RvY_11071"; transcript_id "RvY_11071.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 176537 176778 . - . gene_id "RvY_11071"; transcript_id "RvY_11071.1"; Scaffold006 rebuild exon 177288 177461 . - . gene_id "RvY_11071"; transcript_id "RvY_11071.1"; Scaffold006 rebuild exon 178356 178455 . - . gene_id "RvY_11071"; transcript_id "RvY_11071.1"; Scaffold006 rebuild transcript 183441 185986 . + . gene_id "RvY_11072"; transcript_id "RvY_11072.1"; gene_name "PAX1_9"; annotation "Paired box protein Pax-9"; Pfam "[PAX] 'Paired box' domain|[HTH_23] Homeodomain-like domain"; CDD "Paired Box domain."; KO "K09382"; similar_genes "PAX9_MOUSE(e-value:1.5e-60;bit-score:230.0)"; Scaffold006 rebuild exon 183441 183498 . + . gene_id "RvY_11072"; transcript_id "RvY_11072.1"; Scaffold006 rebuild exon 184571 185098 . + . gene_id "RvY_11072"; transcript_id "RvY_11072.1"; Scaffold006 rebuild exon 185418 185986 . + . gene_id "RvY_11072"; transcript_id "RvY_11072.1"; Scaffold006 rebuild transcript 184434 184679 . - . gene_id "RvY_11073"; transcript_id "RvY_11073.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 184434 184679 . - . gene_id "RvY_11073"; transcript_id "RvY_11073.1"; Scaffold006 rebuild transcript 187234 188809 . - . gene_id "RvY_11074"; transcript_id "RvY_11074.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 187234 187465 . - . gene_id "RvY_11074"; transcript_id "RvY_11074.1"; Scaffold006 rebuild exon 187552 187873 . - . gene_id "RvY_11074"; transcript_id "RvY_11074.1"; Scaffold006 rebuild exon 187940 188328 . - . gene_id "RvY_11074"; transcript_id "RvY_11074.1"; Scaffold006 rebuild exon 188472 188506 . - . gene_id "RvY_11074"; transcript_id "RvY_11074.1"; Scaffold006 rebuild exon 188558 188809 . - . gene_id "RvY_11074"; transcript_id "RvY_11074.1"; Scaffold006 rebuild transcript 190730 192677 . + . gene_id "RvY_11075"; transcript_id "RvY_11075.1"; annotation "putative Coiled-coil domain-containing protein 85C-A"; Pfam "[DUF2216] Uncharacterized conserved proteins (DUF2216)"; similar_genes "C85CA_DANRE(e-value:2.4e-33;bit-score:140.0)"; Scaffold006 rebuild exon 190730 190972 . + . gene_id "RvY_11075"; transcript_id "RvY_11075.1"; Scaffold006 rebuild exon 191043 191216 . + . gene_id "RvY_11075"; transcript_id "RvY_11075.1"; Scaffold006 rebuild exon 191890 192008 . + . gene_id "RvY_11075"; transcript_id "RvY_11075.1"; Scaffold006 rebuild exon 192079 192301 . + . gene_id "RvY_11075"; transcript_id "RvY_11075.1"; Scaffold006 rebuild exon 192501 192677 . + . gene_id "RvY_11075"; transcript_id "RvY_11075.1"; Scaffold006 rebuild transcript 193967 201147 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; annotation "putative MAP kinase-activating death domain protein"; Pfam "[DENN] DENN (AEX-3) domain|[uDENN]|[dDENN]"; similar_genes "MADD_RAT(e-value:2.9e-38;bit-score:156.0)"; Scaffold006 rebuild exon 193967 194074 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 194161 194207 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 194273 194345 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 194419 194598 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 194662 194994 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 195070 195180 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 195246 195351 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 195417 195537 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 195625 195796 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 195916 196089 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 196183 196325 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 196388 196682 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 196746 196952 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 197025 197377 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 197461 197659 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 197728 197961 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 198039 198388 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 198451 198682 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 198772 199164 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 199359 199469 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 199568 199699 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 199766 199924 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 200007 200151 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 200236 200394 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 200458 200673 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild exon 201035 201147 . - . gene_id "RvY_11076"; transcript_id "RvY_11076.1"; Scaffold006 rebuild transcript 201267 201585 . + . gene_id "RvY_11077"; transcript_id "RvY_11077.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 201267 201324 . + . gene_id "RvY_11077"; transcript_id "RvY_11077.1"; Scaffold006 rebuild exon 201377 201585 . + . gene_id "RvY_11077"; transcript_id "RvY_11077.1"; Scaffold006 rebuild transcript 202131 202614 . - . gene_id "RvY_11078"; transcript_id "RvY_11078.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 202131 202366 . - . gene_id "RvY_11078"; transcript_id "RvY_11078.1"; Scaffold006 rebuild exon 202536 202614 . - . gene_id "RvY_11078"; transcript_id "RvY_11078.1"; Scaffold006 rebuild transcript 203257 203625 . - . gene_id "RvY_11079"; transcript_id "RvY_11079.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 203257 203625 . - . gene_id "RvY_11079"; transcript_id "RvY_11079.1"; Scaffold006 rebuild transcript 203685 204591 . + . gene_id "RvY_11080"; transcript_id "RvY_11080.1"; gene_name "UBE2N"; annotation "Ubiquitin-conjugating enzyme E2 N"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K10580"; similar_genes "UBE2N_HUMAN(e-value:8.2e-68;bit-score:254.0)"; Scaffold006 rebuild exon 203685 203726 . + . gene_id "RvY_11080"; transcript_id "RvY_11080.1"; Scaffold006 rebuild exon 203810 203911 . + . gene_id "RvY_11080"; transcript_id "RvY_11080.1"; Scaffold006 rebuild exon 204131 204275 . + . gene_id "RvY_11080"; transcript_id "RvY_11080.1"; Scaffold006 rebuild exon 204356 204496 . + . gene_id "RvY_11080"; transcript_id "RvY_11080.1"; Scaffold006 rebuild exon 204557 204591 . + . gene_id "RvY_11080"; transcript_id "RvY_11080.1"; Scaffold006 rebuild transcript 205045 211939 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; gene_name "PBRM1"; annotation "protein polybromo-1"; Pfam "[HMG_box] HMG (high mobility group) box|[BAH]|[Bromodomain]"; CDD "BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions."; KO "K11757"; similar_genes "PB1_HUMAN(e-value:4.6e-11;bit-score:66.0)"; Scaffold006 rebuild exon 205045 205438 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 205497 205707 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 205768 206107 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 206174 206476 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 206732 207146 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 207214 207569 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 207631 207823 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 207893 208077 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 208250 208607 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 208675 208910 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 209014 209181 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 209246 209590 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 209892 210143 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 210217 210369 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 210462 210531 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 210594 210896 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 211178 211266 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 211335 211619 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild exon 211760 211939 . - . gene_id "RvY_11081"; transcript_id "RvY_11081.1"; Scaffold006 rebuild transcript 212356 212730 . + . gene_id "RvY_11082"; transcript_id "RvY_11082.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 212356 212730 . + . gene_id "RvY_11082"; transcript_id "RvY_11082.1"; Scaffold006 rebuild transcript 213058 213489 . + . gene_id "RvY_11083"; transcript_id "RvY_11083.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 213058 213144 . + . gene_id "RvY_11083"; transcript_id "RvY_11083.1"; Scaffold006 rebuild exon 213235 213489 . + . gene_id "RvY_11083"; transcript_id "RvY_11083.1"; Scaffold006 rebuild transcript 213558 214819 . + . gene_id "RvY_11084"; transcript_id "RvY_11084.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 213558 213620 . + . gene_id "RvY_11084"; transcript_id "RvY_11084.1"; Scaffold006 rebuild exon 213957 214073 . + . gene_id "RvY_11084"; transcript_id "RvY_11084.1"; Scaffold006 rebuild exon 214145 214211 . + . gene_id "RvY_11084"; transcript_id "RvY_11084.1"; Scaffold006 rebuild exon 214280 214516 . + . gene_id "RvY_11084"; transcript_id "RvY_11084.1"; Scaffold006 rebuild exon 214581 214819 . + . gene_id "RvY_11084"; transcript_id "RvY_11084.1"; Scaffold006 rebuild transcript 215208 217464 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; gene_name "COG5202"; annotation "hypothetical protein."; Pfam "[MBOAT] MBOAT, membrane-bound O-acyltransferase family"; CDD "Predicted membrane protein [Function unknown]"; EC "EC2.3.1.-"; KO "K13516"; similar_genes "MBOA7_DANRE(e-value:1.0e-10;bit-score:65.0)"; Scaffold006 rebuild exon 215208 215593 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 215986 216159 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 216221 216273 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 216336 216535 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 216604 216755 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 216819 216987 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 217054 217180 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild exon 217262 217464 . - . gene_id "RvY_11085"; transcript_id "RvY_11085.1"; Scaffold006 rebuild transcript 218628 221394 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; gene_name "JNK"; annotation "Mitogen-activated protein kinase 10"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Kdo] Lipopolysaccharide kinase (Kdo/WaaP) family"; CDD "The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions."; EC "EC2.7.11.24"; KO "K04440"; similar_genes "MK10_HUMAN(e-value:1.4e-169;bit-score:592.0)"; Scaffold006 rebuild exon 218628 218693 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 218794 218852 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 219817 219946 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 220017 220214 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 220297 220462 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 220539 220796 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 220880 221004 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 221075 221138 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild exon 221195 221394 . + . gene_id "RvY_11086"; transcript_id "RvY_11086.1"; Scaffold006 rebuild transcript 222668 226098 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; gene_name "PRKG"; annotation "cGMP-dependent protein kinase 2"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm."; EC "EC2.7.11.12"; KO "K07376"; similar_genes "KGP2_HUMAN(e-value:6.0e-64;bit-score:241.0)"; Scaffold006 rebuild exon 222668 223111 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 223206 223498 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 223565 223698 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 223773 224089 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 224148 224228 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 224310 224470 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 224533 225039 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 225096 225237 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 225314 225477 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 225560 225748 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild exon 225933 226098 . + . gene_id "RvY_11087"; transcript_id "RvY_11087.1"; Scaffold006 rebuild transcript 226581 227855 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; similar_genes "TSN17_RAT(e-value:8.7e-06;bit-score:48.0)"; Scaffold006 rebuild exon 226581 226820 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; Scaffold006 rebuild exon 226886 227002 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; Scaffold006 rebuild exon 227088 227186 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; Scaffold006 rebuild exon 227256 227330 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; Scaffold006 rebuild exon 227418 227612 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; Scaffold006 rebuild exon 227673 227855 . - . gene_id "RvY_11088"; transcript_id "RvY_11088.1"; Scaffold006 rebuild transcript 228406 228774 . + . gene_id "RvY_11089"; transcript_id "RvY_11089.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 228406 228774 . + . gene_id "RvY_11089"; transcript_id "RvY_11089.1"; Scaffold006 rebuild transcript 229035 231109 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; gene_name "ugd"; annotation "UDP-glucose 6-dehydrogenase"; Pfam "[UDPG_MGDP_dh_N] UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain|[UDPG_MGDP_dh_C] UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain|[UDPG_MGDP_dh] UDP-glucose/GDP-mannose dehydrogenase family, central domain"; CDD "Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]"; EC "EC1.1.1.22"; KO "K00012"; similar_genes "UGDH_DROME(e-value:1.6e-64;bit-score:243.0)"; Scaffold006 rebuild exon 229035 229331 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 229403 229570 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 229690 229887 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 229953 230100 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 230171 230265 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 230327 230457 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 230540 230635 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 230719 230839 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild exon 230903 231109 . + . gene_id "RvY_11090"; transcript_id "RvY_11090.1"; Scaffold006 rebuild transcript 232486 233837 . + . gene_id "RvY_11091"; transcript_id "RvY_11091.1"; gene_name "PTZ00168"; annotation "putative Mitoferrin"; Pfam "[Mito_carr] Mitochondrial carrier protein"; CDD "mitochondrial carrier protein; Provisional"; KO "K15113"; similar_genes "MFRN_DROME(e-value:1.6e-32;bit-score:137.0)"; Scaffold006 rebuild exon 232486 232722 . + . gene_id "RvY_11091"; transcript_id "RvY_11091.1"; Scaffold006 rebuild exon 232779 233189 . + . gene_id "RvY_11091"; transcript_id "RvY_11091.1"; Scaffold006 rebuild exon 233466 233837 . + . gene_id "RvY_11091"; transcript_id "RvY_11091.1"; Scaffold006 rebuild transcript 236380 237044 . + . gene_id "RvY_11092"; transcript_id "RvY_11092.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 236380 236505 . + . gene_id "RvY_11092"; transcript_id "RvY_11092.1"; Scaffold006 rebuild exon 236820 237044 . + . gene_id "RvY_11092"; transcript_id "RvY_11092.1"; Scaffold006 rebuild transcript 238016 244218 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; gene_name "EBF"; annotation "Transcription factor COE3"; Pfam "[TIG] IPT/TIG domain"; CDD "IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown."; KO "K09103"; similar_genes "COE3_MOUSE(e-value:2.5e-122;bit-score:435.0)"; Scaffold006 rebuild exon 238016 238239 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 238311 238473 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 239039 239111 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 240466 240521 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 241861 241934 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 242001 242069 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 242981 243444 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 243507 243636 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 243725 243837 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 243913 244068 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild exon 244136 244218 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.1"; Scaffold006 rebuild transcript 238016 244218 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; gene_name "EBF"; annotation "Transcription factor COE3"; Pfam "[TIG] IPT/TIG domain"; CDD "IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown."; KO "K09103"; similar_genes "COE3_MOUSE(e-value:2.5e-122;bit-score:435.0)"; Scaffold006 rebuild exon 238016 238239 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 238311 238467 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 239039 239111 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 240466 240521 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 241861 241934 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 242001 242069 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 242981 243444 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 243507 243636 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 243725 243837 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 243913 244068 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild exon 244136 244218 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.2"; Scaffold006 rebuild transcript 238016 243640 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; gene_name "EBF"; annotation "Transcription factor COE3"; Pfam "[TIG] IPT/TIG domain"; CDD "IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown."; KO "K09103"; similar_genes "COE3_MOUSE(e-value:2.5e-122;bit-score:435.0)"; Scaffold006 rebuild exon 238016 238239 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 238311 238467 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 239039 239111 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 240466 240521 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 241861 241934 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 242001 242069 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 242981 243444 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild exon 243507 243640 . + . gene_id "RvY_11093"; transcript_id "RvY_11093.3"; Scaffold006 rebuild transcript 244585 246258 . - . gene_id "RvY_11094"; transcript_id "RvY_11094.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 244585 245208 . - . gene_id "RvY_11094"; transcript_id "RvY_11094.1"; Scaffold006 rebuild exon 245281 245530 . - . gene_id "RvY_11094"; transcript_id "RvY_11094.1"; Scaffold006 rebuild exon 245602 245733 . - . gene_id "RvY_11094"; transcript_id "RvY_11094.1"; Scaffold006 rebuild exon 245936 246258 . - . gene_id "RvY_11094"; transcript_id "RvY_11094.1"; Scaffold006 rebuild transcript 247106 255402 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold006 rebuild exon 247106 249510 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 249592 249925 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 250234 250688 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 250813 250934 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 251027 251953 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 252028 252501 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 252576 252798 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild exon 255360 255402 . - . gene_id "RvY_11095"; transcript_id "RvY_11095.1"; Scaffold006 rebuild transcript 255795 259636 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 255795 255852 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 256038 256193 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 256256 256405 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 256489 256565 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 256634 256776 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 256841 257105 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 257365 257449 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 257511 257741 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 257845 257987 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 258050 258230 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 258430 258563 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 258642 258761 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 259018 259123 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 259188 259393 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild exon 259472 259636 . + . gene_id "RvY_11096"; transcript_id "RvY_11096.1"; Scaffold006 rebuild transcript 259866 260553 . - . gene_id "RvY_11097"; transcript_id "RvY_11097.1"; gene_name "PRDX"; annotation "putative Peroxiredoxin-2"; Pfam "[AhpC-TSA] AhpC/TSA family|[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold006 rebuild exon 259866 260208 . - . gene_id "RvY_11097"; transcript_id "RvY_11097.1"; Scaffold006 rebuild exon 260291 260553 . - . gene_id "RvY_11097"; transcript_id "RvY_11097.1"; Scaffold006 rebuild transcript 261070 263095 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; gene_name "CCNB"; annotation "cyclin B"; Pfam "[Cyclin_C] Cyclin, C-terminal domain|[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cyclin [Cell division and chromosome partitioning]"; KO "K05868"; similar_genes "CCNB2_ANGJA(e-value:5.8e-24;bit-score:109.0)"; Scaffold006 rebuild exon 261070 261162 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 261233 261337 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 261406 261537 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 261595 261648 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 261710 261888 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 262121 262184 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 262255 262283 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 262361 262484 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 262581 262645 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 262721 262850 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild exon 262916 263095 . - . gene_id "RvY_11098"; transcript_id "RvY_11098.1"; Scaffold006 rebuild transcript 263891 267128 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold006 rebuild exon 263891 264286 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 264389 264495 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 264569 264965 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 265053 265295 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 265383 265474 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 265544 265928 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 265989 266124 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 266184 266368 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 266437 266538 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 266609 266917 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild exon 267081 267128 . - . gene_id "RvY_11099"; transcript_id "RvY_11099.1"; Scaffold006 rebuild transcript 269671 271617 . - . gene_id "RvY_11100"; transcript_id "RvY_11100.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold006 rebuild exon 269671 269745 . - . gene_id "RvY_11100"; transcript_id "RvY_11100.1"; Scaffold006 rebuild exon 270358 270777 . - . gene_id "RvY_11100"; transcript_id "RvY_11100.1"; Scaffold006 rebuild exon 270908 271054 . - . gene_id "RvY_11100"; transcript_id "RvY_11100.1"; Scaffold006 rebuild exon 271192 271617 . - . gene_id "RvY_11100"; transcript_id "RvY_11100.1"; Scaffold006 rebuild transcript 271968 272522 . + . gene_id "RvY_11101"; transcript_id "RvY_11101.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 271968 272522 . + . gene_id "RvY_11101"; transcript_id "RvY_11101.1"; Scaffold006 rebuild transcript 272964 274901 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; gene_name "COG2055"; annotation "hypothetical protein."; Pfam "[Ldh_2] Malate/L-lactate dehydrogenase"; CDD "Malate/L-lactate dehydrogenases [Energy production and conversion]"; EC "EC1.1.1.37"; similar_genes "MDH_PYRHO(e-value:1.9e-22;bit-score:104.0)"; Scaffold006 rebuild exon 272964 273125 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 273199 273294 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 273351 273484 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 273561 273780 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 273852 274048 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 274142 274204 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 274283 274327 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 274408 274465 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild exon 274584 274901 . - . gene_id "RvY_11102"; transcript_id "RvY_11102.1"; Scaffold006 rebuild transcript 275651 278451 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; product "Treh"; gene_name "treA"; annotation "Treh | putative Trehalase"; Pfam "[Trehalase]"; EC "EC3.2.1.28"; KO "K01194"; similar_genes "TREA_BOMMO(e-value:5.2e-27;bit-score:119.0)"; Scaffold006 rebuild exon 275651 275769 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 275848 275956 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 276058 276151 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 276227 276363 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 276536 276729 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 276798 277108 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 277191 277376 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 277463 277698 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 277771 277888 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 277965 278071 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild exon 278149 278451 . + . gene_id "RvY_11103"; transcript_id "RvY_11103.1"; Scaffold006 rebuild transcript 279298 279506 . - . gene_id "RvY_11104"; transcript_id "RvY_11104.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 279298 279369 . - . gene_id "RvY_11104"; transcript_id "RvY_11104.1"; Scaffold006 rebuild exon 279399 279506 . - . gene_id "RvY_11104"; transcript_id "RvY_11104.1"; Scaffold006 rebuild transcript 280242 283050 . + . gene_id "RvY_11105"; transcript_id "RvY_11105.1"; gene_name "MAFB"; annotation "transcription factor MAFB"; Pfam "[bZIP_Maf] bZIP Maf transcription factor"; KO "K09036"; similar_genes "MAF_DANRE(e-value:2.8e-15;bit-score:80.0)"; Scaffold006 rebuild exon 280242 280650 . + . gene_id "RvY_11105"; transcript_id "RvY_11105.1"; Scaffold006 rebuild exon 280804 281231 . + . gene_id "RvY_11105"; transcript_id "RvY_11105.1"; Scaffold006 rebuild exon 282526 283050 . + . gene_id "RvY_11105"; transcript_id "RvY_11105.1"; Scaffold006 rebuild transcript 283677 284117 . - . gene_id "RvY_11106"; transcript_id "RvY_11106.1"; annotation "hypothetical protein."; Pfam "[DDDD] Putative mitochondrial precursor protein"; Scaffold006 rebuild exon 283677 284117 . - . gene_id "RvY_11106"; transcript_id "RvY_11106.1"; Scaffold006 rebuild transcript 284891 285852 . + . gene_id "RvY_11107"; transcript_id "RvY_11107.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 284891 285398 . + . gene_id "RvY_11107"; transcript_id "RvY_11107.1"; Scaffold006 rebuild exon 285557 285852 . + . gene_id "RvY_11107"; transcript_id "RvY_11107.1"; Scaffold006 rebuild transcript 286139 287701 . + . gene_id "RvY_11108"; transcript_id "RvY_11108.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 286139 286265 . + . gene_id "RvY_11108"; transcript_id "RvY_11108.1"; Scaffold006 rebuild exon 286325 286576 . + . gene_id "RvY_11108"; transcript_id "RvY_11108.1"; Scaffold006 rebuild exon 286743 287701 . + . gene_id "RvY_11108"; transcript_id "RvY_11108.1"; Scaffold006 rebuild transcript 287981 289380 . - . gene_id "RvY_11109"; transcript_id "RvY_11109.1"; gene_name "SRF"; annotation "putative Serum response factor homolog"; Pfam "[SRF-TF] SRF-type transcription factor (DNA-binding and dimerisation domain)"; CDD "MADS domain."; KO "K04378"; similar_genes "SRF_DROME(e-value:1.1e-41;bit-score:167.0)"; Scaffold006 rebuild exon 287981 288478 . - . gene_id "RvY_11109"; transcript_id "RvY_11109.1"; Scaffold006 rebuild exon 289024 289380 . - . gene_id "RvY_11109"; transcript_id "RvY_11109.1"; Scaffold006 rebuild transcript 289966 290226 . + . gene_id "RvY_11110"; transcript_id "RvY_11110.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 289966 290226 . + . gene_id "RvY_11110"; transcript_id "RvY_11110.1"; Scaffold006 rebuild transcript 292677 292856 . + . gene_id "RvY_11111"; transcript_id "RvY_11111.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 292677 292856 . + . gene_id "RvY_11111"; transcript_id "RvY_11111.1"; Scaffold006 rebuild transcript 292782 302591 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; gene_name "MYO5"; annotation "Myosin-Va"; Pfam "[Myosin_head] Myosin head (motor domain)|[DIL]|[IQ] IQ calmodulin-binding motif"; CDD "Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle."; KO "K10357"; similar_genes "MYO5A_CHICK(e-value:7.4e-90;bit-score:328.0)"; Scaffold006 rebuild exon 292782 293057 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 293469 293649 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 293709 293982 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 294179 294434 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 294497 294783 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 294853 294952 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 295109 295168 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 295378 295860 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 295927 296055 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 296141 296252 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 296768 296877 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 296945 297301 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 297519 297608 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 297676 297982 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 298108 298431 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 298728 298924 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 299121 299510 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 299803 300159 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 300221 300567 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 300778 301166 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 301222 301423 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 301482 301593 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 301694 301810 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild exon 302565 302591 . - . gene_id "RvY_11112"; transcript_id "RvY_11112.1"; Scaffold006 rebuild transcript 303999 305433 . + . gene_id "RvY_11113"; transcript_id "RvY_11113.1"; gene_name "PKA"; annotation "cAMP-dependent protein kinase catalytic subunit"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and Scaffold006 rebuild exon 303999 304432 . + . gene_id "RvY_11113"; transcript_id "RvY_11113.1"; Scaffold006 rebuild exon 304722 305241 . + . gene_id "RvY_11113"; transcript_id "RvY_11113.1"; Scaffold006 rebuild exon 305308 305433 . + . gene_id "RvY_11113"; transcript_id "RvY_11113.1"; Scaffold006 rebuild transcript 306123 308117 . + . gene_id "RvY_11114"; transcript_id "RvY_11114.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 306123 308117 . + . gene_id "RvY_11114"; transcript_id "RvY_11114.1"; Scaffold006 rebuild transcript 308610 309014 . - . gene_id "RvY_11115"; transcript_id "RvY_11115.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 308610 309014 . - . gene_id "RvY_11115"; transcript_id "RvY_11115.1"; Scaffold006 rebuild transcript 309275 310907 . + . gene_id "RvY_11116"; transcript_id "RvY_11116.1"; annotation "hypothetical protein."; Pfam "[Mid1] Stretch-activated Ca2+-permeable channel component"; Scaffold006 rebuild exon 309275 310117 . + . gene_id "RvY_11116"; transcript_id "RvY_11116.1"; Scaffold006 rebuild exon 310433 310598 . + . gene_id "RvY_11116"; transcript_id "RvY_11116.1"; Scaffold006 rebuild exon 310666 310907 . + . gene_id "RvY_11116"; transcript_id "RvY_11116.1"; Scaffold006 rebuild transcript 311342 313430 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; gene_name "PPM1B"; annotation "Protein phosphatase 1B"; Pfam "[PP2C_C] Protein serine/threonine phosphatase 2C, C-terminal domain|[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; EC "EC3.1.3.16"; KO "K04461"; similar_genes "PPM1B_BOVIN(e-value:2.8e-53;bit-score:206.0)"; Scaffold006 rebuild exon 311342 311648 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; Scaffold006 rebuild exon 311706 311829 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; Scaffold006 rebuild exon 311914 312031 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; Scaffold006 rebuild exon 312263 312772 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; Scaffold006 rebuild exon 313005 313182 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; Scaffold006 rebuild exon 313273 313430 . - . gene_id "RvY_11117"; transcript_id "RvY_11117.1"; Scaffold006 rebuild transcript 315531 317976 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; annotation "Sorting nexin-2"; Pfam "[BAR_3_WASP_bdg] WASP-binding domain of Sorting nexin protein|[PX]|[Vps5] Vps5 C terminal like"; similar_genes "SNX2_BOVIN(e-value:8.6e-74;bit-score:274.0)"; Scaffold006 rebuild exon 315531 315629 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 315727 315966 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 316125 316667 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 316904 316997 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 317063 317268 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 317338 317481 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 317709 317861 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild exon 317920 317976 . + . gene_id "RvY_11118"; transcript_id "RvY_11118.1"; Scaffold006 rebuild transcript 318559 320592 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; gene_name "Thr-synth_2"; annotation "hypothetical protein."; Pfam "[PALP] Pyridoxal-phosphate dependent enzyme"; CDD "Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins."; EC "EC4.2.3.-"; similar_genes "THNS2_RAT(e-value:1.5e-20;bit-score:97.0)"; Scaffold006 rebuild exon 318559 318939 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; Scaffold006 rebuild exon 319015 319143 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; Scaffold006 rebuild exon 319208 319356 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; Scaffold006 rebuild exon 319417 319650 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; Scaffold006 rebuild exon 319734 320093 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; Scaffold006 rebuild exon 320331 320592 . - . gene_id "RvY_11119"; transcript_id "RvY_11119.1"; Scaffold006 rebuild transcript 321910 322113 . - . gene_id "RvY_11120"; transcript_id "RvY_11120.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold006 rebuild exon 321910 322113 . - . gene_id "RvY_11120"; transcript_id "RvY_11120.1"; Scaffold006 rebuild transcript 322477 322874 . - . gene_id "RvY_11121"; transcript_id "RvY_11121.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 322477 322741 . - . gene_id "RvY_11121"; transcript_id "RvY_11121.1"; Scaffold006 rebuild exon 322828 322874 . - . gene_id "RvY_11121"; transcript_id "RvY_11121.1"; Scaffold006 rebuild transcript 323179 324079 . - . gene_id "RvY_11122"; transcript_id "RvY_11122.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 323179 323292 . - . gene_id "RvY_11122"; transcript_id "RvY_11122.1"; Scaffold006 rebuild exon 323358 323423 . - . gene_id "RvY_11122"; transcript_id "RvY_11122.1"; Scaffold006 rebuild exon 323457 323882 . - . gene_id "RvY_11122"; transcript_id "RvY_11122.1"; Scaffold006 rebuild exon 323954 324079 . - . gene_id "RvY_11122"; transcript_id "RvY_11122.1"; Scaffold006 rebuild transcript 324425 324988 . - . gene_id "RvY_11123"; transcript_id "RvY_11123.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 324425 324526 . - . gene_id "RvY_11123"; transcript_id "RvY_11123.1"; Scaffold006 rebuild exon 324878 324988 . - . gene_id "RvY_11123"; transcript_id "RvY_11123.1"; Scaffold006 rebuild transcript 326755 326997 . + . gene_id "RvY_11124"; transcript_id "RvY_11124.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 326755 326997 . + . gene_id "RvY_11124"; transcript_id "RvY_11124.1"; Scaffold006 rebuild transcript 327063 328532 . - . gene_id "RvY_11125"; transcript_id "RvY_11125.1"; gene_name "glpQ"; annotation "glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]"; Pfam "[GDPD] Glycerophosphoryl diester phosphodiesterase family|[GDPD_2] Glycerophosphoryl diester phosphodiesterase family"; EC "EC3.1.4.46"; KO "K01126"; Scaffold006 rebuild exon 327063 327535 . - . gene_id "RvY_11125"; transcript_id "RvY_11125.1"; Scaffold006 rebuild exon 327612 328162 . - . gene_id "RvY_11125"; transcript_id "RvY_11125.1"; Scaffold006 rebuild exon 328402 328532 . - . gene_id "RvY_11125"; transcript_id "RvY_11125.1"; Scaffold006 rebuild transcript 329228 330670 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 329228 329415 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.1"; Scaffold006 rebuild exon 329617 330462 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.1"; Scaffold006 rebuild exon 330535 330670 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.1"; Scaffold006 rebuild transcript 329228 330520 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 329228 329415 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.2"; Scaffold006 rebuild exon 329617 330520 . + . gene_id "RvY_11126"; transcript_id "RvY_11126.2"; Scaffold006 rebuild transcript 331078 331465 . - . gene_id "RvY_11127"; transcript_id "RvY_11127.1"; gene_name "K07213"; annotation "hypothetical protein."; Pfam "[HMA] Heavy-metal-associated domain"; KO "K07213"; Scaffold006 rebuild exon 331078 331214 . - . gene_id "RvY_11127"; transcript_id "RvY_11127.1"; Scaffold006 rebuild exon 331268 331343 . - . gene_id "RvY_11127"; transcript_id "RvY_11127.1"; Scaffold006 rebuild exon 331454 331465 . - . gene_id "RvY_11127"; transcript_id "RvY_11127.1"; Scaffold006 rebuild transcript 333819 336656 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; gene_name "(4,5)GNPTAB"; annotation "(1,2,3)hypothetical protein.(4,5)putative N-acetylglucosamine-1-phosphotransferase subunits alpha/beta"; Pfam "(1,2,3)[Notch] LNR domain|(4,5)[DUF3184]"; EC "EC2.7.8.17"; KO "(4,5)K08239"; similar_genes "(1,2,3)GNPTA_HUMAN(e-value:3.8e-23;bit-score:106.0)(4)GNPTA_DANRE(e-value:5.0e-40;bit-score:162.0)(5)GNPTA_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold006 rebuild exon 333819 334155 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; Scaffold006 rebuild exon 334389 334774 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; Scaffold006 rebuild exon 335001 335984 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; Scaffold006 rebuild exon 336089 336333 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; Scaffold006 rebuild exon 336405 336483 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; Scaffold006 rebuild exon 336555 336656 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.1"; Scaffold006 rebuild transcript 333951 336656 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; gene_name "(4,5)GNPTAB"; annotation "(1,2,3)hypothetical protein.(4,5)putative N-acetylglucosamine-1-phosphotransferase subunits alpha/beta"; Pfam "(1,2,3)[Notch] LNR domain|(4,5)[DUF3184]"; EC "EC2.7.8.17"; KO "(4,5)K08239"; similar_genes "(1,2,3)GNPTA_HUMAN(e-value:3.8e-23;bit-score:106.0)(4)GNPTA_DANRE(e-value:5.0e-40;bit-score:162.0)(5)GNPTA_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold006 rebuild exon 333951 334155 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; Scaffold006 rebuild exon 334389 334774 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; Scaffold006 rebuild exon 335001 335984 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; Scaffold006 rebuild exon 336089 336333 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; Scaffold006 rebuild exon 336405 336483 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; Scaffold006 rebuild exon 336555 336656 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.2"; Scaffold006 rebuild transcript 334107 336656 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; gene_name "(4,5)GNPTAB"; annotation "(1,2,3)hypothetical protein.(4,5)putative N-acetylglucosamine-1-phosphotransferase subunits alpha/beta"; Pfam "(1,2,3)[Notch] LNR domain|(4,5)[DUF3184]"; EC "EC2.7.8.17"; KO "(4,5)K08239"; similar_genes "(1,2,3)GNPTA_HUMAN(e-value:3.8e-23;bit-score:106.0)(4)GNPTA_DANRE(e-value:5.0e-40;bit-score:162.0)(5)GNPTA_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold006 rebuild exon 334107 334155 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; Scaffold006 rebuild exon 334389 334774 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; Scaffold006 rebuild exon 335001 335984 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; Scaffold006 rebuild exon 336089 336333 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; Scaffold006 rebuild exon 336405 336483 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; Scaffold006 rebuild exon 336555 336656 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.3"; Scaffold006 rebuild transcript 332164 333826 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.4"; gene_name "(4,5)GNPTAB"; annotation "(1,2,3)hypothetical protein.(4,5)putative N-acetylglucosamine-1-phosphotransferase subunits alpha/beta"; Pfam "(1,2,3)[Notch] LNR domain|(4,5)[DUF3184]"; EC "EC2.7.8.17"; KO "(4,5)K08239"; similar_genes "(1,2,3)GNPTA_HUMAN(e-value:3.8e-23;bit-score:106.0)(4)GNPTA_DANRE(e-value:5.0e-40;bit-score:162.0)(5)GNPTA_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold006 rebuild exon 332164 332518 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.4"; Scaffold006 rebuild exon 332707 333323 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.4"; Scaffold006 rebuild exon 333396 333626 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.4"; Scaffold006 rebuild exon 333701 333826 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.4"; Scaffold006 rebuild transcript 332164 333882 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.5"; gene_name "(4,5)GNPTAB"; annotation "(1,2,3)hypothetical protein.(4,5)putative N-acetylglucosamine-1-phosphotransferase subunits alpha/beta"; Pfam "(1,2,3)[Notch] LNR domain|(4,5)[DUF3184]"; EC "EC2.7.8.17"; KO "(4,5)K08239"; similar_genes "(1,2,3)GNPTA_HUMAN(e-value:3.8e-23;bit-score:106.0)(4)GNPTA_DANRE(e-value:5.0e-40;bit-score:162.0)(5)GNPTA_DANRE(e-value:3.0e-42;bit-score:169.0)"; Scaffold006 rebuild exon 332164 332518 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.5"; Scaffold006 rebuild exon 332707 333323 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.5"; Scaffold006 rebuild exon 333396 333626 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.5"; Scaffold006 rebuild exon 333701 333781 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.5"; Scaffold006 rebuild exon 333847 333882 . + . gene_id "RvY_11128"; transcript_id "RvY_11128.5"; Scaffold006 rebuild transcript 337706 338569 . - . gene_id "RvY_11129"; transcript_id "RvY_11129.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 337706 338569 . - . gene_id "RvY_11129"; transcript_id "RvY_11129.1"; Scaffold006 rebuild transcript 341232 345863 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; gene_name "GALNT"; annotation "Polypeptide N-acetylgalactosaminyltransferase 2"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.41"; KO "K00710"; similar_genes "GALT2_HUMAN(e-value:2.2e-72;bit-score:270.0)"; Scaffold006 rebuild exon 341232 341384 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 342397 342686 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 342758 342865 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 342989 343056 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 343884 343949 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 344075 344196 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 344284 344359 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 344444 344543 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 344613 344716 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 344936 345062 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 345128 345304 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 345384 345627 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild exon 345702 345863 . + . gene_id "RvY_11130"; transcript_id "RvY_11130.1"; Scaffold006 rebuild transcript 346501 354572 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; gene_name "ILWEQ"; annotation "putative Talin-2"; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[I_LWEQ] I/LWEQ domain"; CDD "I/LWEQ domain. Thought to possess an F-actin binding function."; similar_genes "TLN2_MOUSE(e-value:3.7e-36;bit-score:149.0)"; Scaffold006 rebuild exon 346501 346672 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 347039 347142 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 347254 347383 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 347454 347660 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 347750 347892 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 347976 348374 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 348581 348852 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 348999 349376 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 349441 349594 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 349701 351215 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 351403 352320 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 352400 352474 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 352565 353105 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 353679 354016 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 354083 354211 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild exon 354390 354572 . + . gene_id "RvY_11131"; transcript_id "RvY_11131.1"; Scaffold006 rebuild transcript 355171 355953 . - . gene_id "RvY_11132"; transcript_id "RvY_11132.1"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; Scaffold006 rebuild exon 355171 355520 . - . gene_id "RvY_11132"; transcript_id "RvY_11132.1"; Scaffold006 rebuild exon 355827 355953 . - . gene_id "RvY_11132"; transcript_id "RvY_11132.1"; Scaffold006 rebuild transcript 357089 358483 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]|[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.12"; similar_genes "ARSB_RAT(e-value:4.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 357089 357458 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.1"; Scaffold006 rebuild exon 357697 358225 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.1"; Scaffold006 rebuild exon 358288 358483 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.1"; Scaffold006 rebuild transcript 357594 358483 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.2"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]|[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.12"; similar_genes "ARSB_RAT(e-value:4.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 357594 358225 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.2"; Scaffold006 rebuild exon 358288 358483 . - . gene_id "RvY_11133"; transcript_id "RvY_11133.2"; Scaffold006 rebuild transcript 358550 359059 . - . gene_id "RvY_11134"; transcript_id "RvY_11134.1"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; Scaffold006 rebuild exon 358550 358579 . - . gene_id "RvY_11134"; transcript_id "RvY_11134.1"; Scaffold006 rebuild exon 358683 358756 . - . gene_id "RvY_11134"; transcript_id "RvY_11134.1"; Scaffold006 rebuild exon 358828 358864 . - . gene_id "RvY_11134"; transcript_id "RvY_11134.1"; Scaffold006 rebuild exon 358949 359059 . - . gene_id "RvY_11134"; transcript_id "RvY_11134.1"; Scaffold006 rebuild transcript 360244 362796 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.1"; gene_name "(1)HAND"; annotation "(1)heart-and neural crest derivatives-expressed protein(2)hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "(1)K09071"; similar_genes "HAND2_XENLA(e-value:6.5e-21;bit-score:99.0)"; Scaffold006 rebuild exon 360244 360378 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.1"; Scaffold006 rebuild exon 361866 362215 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.1"; Scaffold006 rebuild exon 362463 362796 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.1"; Scaffold006 rebuild transcript 361842 362796 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.2"; gene_name "(1)HAND"; annotation "(1)heart-and neural crest derivatives-expressed protein(2)hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "(1)K09071"; similar_genes "HAND2_XENLA(e-value:6.5e-21;bit-score:99.0)"; Scaffold006 rebuild exon 361842 362215 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.2"; Scaffold006 rebuild exon 362463 362796 . - . gene_id "RvY_11135"; transcript_id "RvY_11135.2"; Scaffold006 rebuild transcript 363673 363942 . - . gene_id "RvY_11136"; transcript_id "RvY_11136.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 363673 363942 . - . gene_id "RvY_11136"; transcript_id "RvY_11136.1"; Scaffold006 rebuild transcript 366042 366422 . + . gene_id "RvY_11137"; transcript_id "RvY_11137.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 366042 366422 . + . gene_id "RvY_11137"; transcript_id "RvY_11137.1"; Scaffold006 rebuild transcript 366916 370083 . - . gene_id "RvY_11138"; transcript_id "RvY_11138.1"; gene_name "WNT4"; annotation "putative Protein Wnt-4"; Pfam "[wnt] wnt family"; CDD "found in Wnt-1."; KO "K00408"; similar_genes "WNT4_HUMAN(e-value:4.6e-45;bit-score:179.0)"; Scaffold006 rebuild exon 366916 367383 . - . gene_id "RvY_11138"; transcript_id "RvY_11138.1"; Scaffold006 rebuild exon 368549 368829 . - . gene_id "RvY_11138"; transcript_id "RvY_11138.1"; Scaffold006 rebuild exon 369059 369294 . - . gene_id "RvY_11138"; transcript_id "RvY_11138.1"; Scaffold006 rebuild exon 369989 370083 . - . gene_id "RvY_11138"; transcript_id "RvY_11138.1"; Scaffold006 rebuild transcript 373551 377958 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; gene_name "THBS"; annotation "Cartilage oligomeric matrix protein"; Pfam "[EGF_3] EGF domain|[cEGF] Complement Clr-like EGF-like|[TSP_3] Thrombospondin type 3 repeat|[EGF_CA] Calcium-binding EGF domain|[TSP_C] Thrombospondin C-terminal region"; KO "K04659"; similar_genes "COMP_RAT(e-value:2.0e-168;bit-score:589.0)"; Scaffold006 rebuild exon 373551 373662 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 373792 373950 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 374508 374788 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 374858 375124 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 375200 375355 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 375486 375701 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 375786 375924 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 375993 376199 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 376534 376617 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 376745 376840 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 377014 377611 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 377680 377819 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild exon 377885 377958 . + . gene_id "RvY_11139"; transcript_id "RvY_11139.1"; Scaffold006 rebuild transcript 378266 379108 . - . gene_id "RvY_11140"; transcript_id "RvY_11140.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 378266 379108 . - . gene_id "RvY_11140"; transcript_id "RvY_11140.1"; Scaffold006 rebuild transcript 379517 380905 . + . gene_id "RvY_11141"; transcript_id "RvY_11141.1"; annotation "putative Thrombospondin-4"; Pfam "[TSP_C] Thrombospondin C-terminal region"; similar_genes "TSP4_HUMAN(e-value:1.4e-46;bit-score:184.0)"; Scaffold006 rebuild exon 379517 379531 . + . gene_id "RvY_11141"; transcript_id "RvY_11141.1"; Scaffold006 rebuild exon 380519 380905 . + . gene_id "RvY_11141"; transcript_id "RvY_11141.1"; Scaffold006 rebuild transcript 381752 382618 . - . gene_id "RvY_11142"; transcript_id "RvY_11142.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 381752 382618 . - . gene_id "RvY_11142"; transcript_id "RvY_11142.1"; Scaffold006 rebuild transcript 387593 388068 . + . gene_id "RvY_11143"; transcript_id "RvY_11143.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 387593 387683 . + . gene_id "RvY_11143"; transcript_id "RvY_11143.1"; Scaffold006 rebuild exon 387689 388068 . + . gene_id "RvY_11143"; transcript_id "RvY_11143.1"; Scaffold006 rebuild transcript 388278 388865 . + . gene_id "RvY_11144"; transcript_id "RvY_11144.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 388278 388689 . + . gene_id "RvY_11144"; transcript_id "RvY_11144.1"; Scaffold006 rebuild exon 388849 388865 . + . gene_id "RvY_11144"; transcript_id "RvY_11144.1"; Scaffold006 rebuild transcript 388924 389502 . - . gene_id "RvY_11145"; transcript_id "RvY_11145.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold006 rebuild exon 388924 389502 . - . gene_id "RvY_11145"; transcript_id "RvY_11145.1"; Scaffold006 rebuild transcript 390772 391182 . - . gene_id "RvY_11146"; transcript_id "RvY_11146.1"; annotation "hypothetical protein."; similar_genes "SPOPB_XENLA(e-value:6.6e-06;bit-score:49.0)"; Scaffold006 rebuild exon 390772 391079 . - . gene_id "RvY_11146"; transcript_id "RvY_11146.1"; Scaffold006 rebuild exon 391104 391182 . - . gene_id "RvY_11146"; transcript_id "RvY_11146.1"; Scaffold006 rebuild transcript 391224 391860 . - . gene_id "RvY_11147"; transcript_id "RvY_11147.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 391224 391494 . - . gene_id "RvY_11147"; transcript_id "RvY_11147.1"; Scaffold006 rebuild exon 391571 391860 . - . gene_id "RvY_11147"; transcript_id "RvY_11147.1"; Scaffold006 rebuild transcript 391625 391954 . - . gene_id "RvY_11147"; transcript_id "RvY_11147.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 391625 391954 . - . gene_id "RvY_11147"; transcript_id "RvY_11147.2"; Scaffold006 rebuild transcript 392321 393081 . - . gene_id "RvY_11148"; transcript_id "RvY_11148.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 392321 392643 . - . gene_id "RvY_11148"; transcript_id "RvY_11148.1"; Scaffold006 rebuild exon 393060 393081 . - . gene_id "RvY_11148"; transcript_id "RvY_11148.1"; Scaffold006 rebuild transcript 393146 394534 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; gene_name "ARL1"; annotation "ADP-ribosylation factor-like protein 1"; Pfam "[G-alpha] G-protein alpha subunit|[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability."; KO "K07942"; similar_genes "ARL1_DROME(e-value:3.3e-73;bit-score:272.0)"; Scaffold006 rebuild exon 393146 393149 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 393254 393325 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 393415 393477 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 393598 393650 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 393745 393822 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 393901 393964 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 394219 394399 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild exon 394504 394534 . + . gene_id "RvY_11149"; transcript_id "RvY_11149.1"; Scaffold006 rebuild transcript 394907 397662 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; gene_name "BTBD1_2"; annotation "BTB/POZ domain-containing protein 1"; Pfam "[PHR]|[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; KO "K10477"; similar_genes "BTBD1_HUMAN(e-value:4.1e-84;bit-score:308.0)"; Scaffold006 rebuild exon 394907 395068 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 395344 395578 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 395691 395872 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 395956 396091 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 396233 396332 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 396606 396850 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 396942 397061 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild exon 397280 397662 . - . gene_id "RvY_11150"; transcript_id "RvY_11150.1"; Scaffold006 rebuild transcript 398253 399717 . - . gene_id "RvY_11151"; transcript_id "RvY_11151.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold006 rebuild exon 398253 398925 . - . gene_id "RvY_11151"; transcript_id "RvY_11151.1"; Scaffold006 rebuild exon 399101 399717 . - . gene_id "RvY_11151"; transcript_id "RvY_11151.1"; Scaffold006 rebuild transcript 400540 400743 . - . gene_id "RvY_11152"; transcript_id "RvY_11152.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 400540 400743 . - . gene_id "RvY_11152"; transcript_id "RvY_11152.1"; Scaffold006 rebuild transcript 401756 402438 . - . gene_id "RvY_11153"; transcript_id "RvY_11153.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 401756 401943 . - . gene_id "RvY_11153"; transcript_id "RvY_11153.1"; Scaffold006 rebuild exon 402387 402438 . - . gene_id "RvY_11153"; transcript_id "RvY_11153.1"; Scaffold006 rebuild transcript 402449 402682 . - . gene_id "RvY_11154"; transcript_id "RvY_11154.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 402449 402682 . - . gene_id "RvY_11154"; transcript_id "RvY_11154.1"; Scaffold006 rebuild transcript 404833 405481 . - . gene_id "RvY_11155"; transcript_id "RvY_11155.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 404833 404991 . - . gene_id "RvY_11155"; transcript_id "RvY_11155.1"; Scaffold006 rebuild exon 405054 405207 . - . gene_id "RvY_11155"; transcript_id "RvY_11155.1"; Scaffold006 rebuild exon 405285 405481 . - . gene_id "RvY_11155"; transcript_id "RvY_11155.1"; Scaffold006 rebuild transcript 405598 406203 . - . gene_id "RvY_11156"; transcript_id "RvY_11156.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold006 rebuild exon 405598 405736 . - . gene_id "RvY_11156"; transcript_id "RvY_11156.1"; Scaffold006 rebuild exon 405857 405976 . - . gene_id "RvY_11156"; transcript_id "RvY_11156.1"; Scaffold006 rebuild exon 406046 406203 . - . gene_id "RvY_11156"; transcript_id "RvY_11156.1"; Scaffold006 rebuild transcript 406692 413641 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; gene_name "SMARCA5"; annotation "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5"; Pfam "[SLIDE]|[SNF2_N] SNF2 family N-terminal domain|[HAND]|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[ResIII] Type III restriction enzyme, res subunit"; EC "EC3.6.1.-"; KO "K11654"; similar_genes "SMCA5_HUMAN(e-value:1.1e-118;bit-score:423.0)"; Scaffold006 rebuild exon 406692 406814 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 406913 407145 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 407383 407483 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 407560 407660 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 407739 407866 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 407946 407994 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 408106 408270 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 408472 408840 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 408897 409062 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 409124 409380 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 409674 409973 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 410099 410329 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 410618 410908 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 412633 412940 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild exon 413233 413641 . + . gene_id "RvY_11157"; transcript_id "RvY_11157.1"; Scaffold006 rebuild transcript 415722 415898 . - . gene_id "RvY_11158"; transcript_id "RvY_11158.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 415722 415898 . - . gene_id "RvY_11158"; transcript_id "RvY_11158.1"; Scaffold006 rebuild transcript 416191 416367 . - . gene_id "RvY_11159"; transcript_id "RvY_11159.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 416191 416367 . - . gene_id "RvY_11159"; transcript_id "RvY_11159.1"; Scaffold006 rebuild transcript 416605 419209 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 416605 417160 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; Scaffold006 rebuild exon 417437 417775 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; Scaffold006 rebuild exon 417859 417976 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; Scaffold006 rebuild exon 418485 418573 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; Scaffold006 rebuild exon 418659 418910 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; Scaffold006 rebuild exon 418989 419209 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.1"; Scaffold006 rebuild transcript 417090 419209 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 417090 417160 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.2"; Scaffold006 rebuild exon 417437 417976 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.2"; Scaffold006 rebuild exon 418485 418573 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.2"; Scaffold006 rebuild exon 418659 418910 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.2"; Scaffold006 rebuild exon 418989 419209 . - . gene_id "RvY_11160"; transcript_id "RvY_11160.2"; Scaffold006 rebuild transcript 419886 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; gene_name "KCNMA1"; annotation "Calcium-activated potassium channel slowpoke"; Pfam "[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|[Ion_trans] Ion transport protein"; KO "K04936"; similar_genes "SLO_DROME(e-value:9.6e-141;bit-score:497.0)"; Scaffold006 rebuild exon 419886 420266 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 420440 420634 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 420902 421032 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 421231 421329 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 421404 421430 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 421555 421723 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 421781 422005 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 422185 422389 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 422456 422500 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 422573 422774 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 423207 423248 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 423356 423406 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 423586 423662 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 423803 423961 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 424063 424175 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 424251 424406 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 424601 424859 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 424949 425059 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 425223 425314 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 425413 425583 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 425974 426237 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 426755 426854 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 427127 427188 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild exon 427456 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.1"; Scaffold006 rebuild transcript 419886 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; gene_name "KCNMA1"; annotation "Calcium-activated potassium channel slowpoke"; Pfam "[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|[Ion_trans] Ion transport protein"; KO "K04936"; similar_genes "SLO_DROME(e-value:9.6e-141;bit-score:497.0)"; Scaffold006 rebuild exon 419886 420266 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 420440 420634 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 420902 421032 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 421231 421329 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 421404 421430 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 421555 421723 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 421781 422005 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 422185 422389 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 422456 422500 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 422573 422774 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 423356 423406 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 423586 423662 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 423803 423961 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 424063 424175 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 424251 424406 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 424601 424859 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 424949 425059 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 425223 425314 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 425413 425583 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 425974 426237 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 426755 426854 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 427127 427188 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild exon 427456 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.2"; Scaffold006 rebuild transcript 419886 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; gene_name "KCNMA1"; annotation "Calcium-activated potassium channel slowpoke"; Pfam "[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|[Ion_trans] Ion transport protein"; KO "K04936"; similar_genes "SLO_DROME(e-value:9.6e-141;bit-score:497.0)"; Scaffold006 rebuild exon 419886 420266 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 420440 420634 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 420902 421032 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 421231 421329 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 421404 421430 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 421555 421723 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 421781 422005 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 422185 422389 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 422456 422500 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 422573 422774 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 423586 423662 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 423803 423961 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 424063 424175 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 424251 424406 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 424601 424859 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 424949 425059 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 425223 425314 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 425413 425583 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 425974 426237 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 426755 426854 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 427127 427188 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild exon 427456 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.3"; Scaffold006 rebuild transcript 419886 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; gene_name "KCNMA1"; annotation "Calcium-activated potassium channel slowpoke"; Pfam "[Ion_trans_2] Ion channel|[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|[Ion_trans] Ion transport protein"; KO "K04936"; similar_genes "SLO_DROME(e-value:9.6e-141;bit-score:497.0)"; Scaffold006 rebuild exon 419886 420266 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 420440 420634 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 420902 421032 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 421231 421329 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 421404 421430 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 421555 421723 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 421781 422005 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 422185 422389 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 422456 422500 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 422573 422738 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 423586 423662 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 423803 423961 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 424063 424175 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 424251 424406 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 424601 424859 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 424949 425059 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 425223 425314 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 425413 425583 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 425974 426237 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 426755 426854 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 427127 427188 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild exon 427456 427878 . - . gene_id "RvY_11161"; transcript_id "RvY_11161.4"; Scaffold006 rebuild transcript 428223 428408 . - . gene_id "RvY_11162"; transcript_id "RvY_11162.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 428223 428408 . - . gene_id "RvY_11162"; transcript_id "RvY_11162.1"; Scaffold006 rebuild transcript 429585 430381 . - . gene_id "RvY_11163"; transcript_id "RvY_11163.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 429585 429870 . - . gene_id "RvY_11163"; transcript_id "RvY_11163.1"; Scaffold006 rebuild exon 430305 430381 . - . gene_id "RvY_11163"; transcript_id "RvY_11163.1"; Scaffold006 rebuild transcript 432421 433236 . - . gene_id "RvY_11164"; transcript_id "RvY_11164.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 432421 433076 . - . gene_id "RvY_11164"; transcript_id "RvY_11164.1"; Scaffold006 rebuild exon 433155 433236 . - . gene_id "RvY_11164"; transcript_id "RvY_11164.1"; Scaffold006 rebuild transcript 435223 437036 . + . gene_id "RvY_11165"; transcript_id "RvY_11165.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 435223 435535 . + . gene_id "RvY_11165"; transcript_id "RvY_11165.1"; Scaffold006 rebuild exon 435650 435834 . + . gene_id "RvY_11165"; transcript_id "RvY_11165.1"; Scaffold006 rebuild exon 436216 436622 . + . gene_id "RvY_11165"; transcript_id "RvY_11165.1"; Scaffold006 rebuild exon 436692 436797 . + . gene_id "RvY_11165"; transcript_id "RvY_11165.1"; Scaffold006 rebuild exon 436860 437036 . + . gene_id "RvY_11165"; transcript_id "RvY_11165.1"; Scaffold006 rebuild transcript 438301 440546 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; gene_name "(1,2)PAS"; annotation "hypothetical protein."; Pfam "(2)[PAS_3] PAS fold|(1)[PAS] PAS fold"; CDD "(1)PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).(2)PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction."; similar_genes "(1,3)TRH_DROME(e-value:2.2e-19;bit-score:93.0)"; Scaffold006 rebuild exon 438301 438576 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; Scaffold006 rebuild exon 438671 438972 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; Scaffold006 rebuild exon 439061 439103 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; Scaffold006 rebuild exon 439196 439359 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; Scaffold006 rebuild exon 439965 440203 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; Scaffold006 rebuild exon 440347 440546 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.1"; Scaffold006 rebuild transcript 437263 438838 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.2"; gene_name "(1,2)PAS"; annotation "hypothetical protein."; Pfam "(2)[PAS_3] PAS fold|(1)[PAS] PAS fold"; CDD "(1)PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).(2)PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction."; similar_genes "(1,3)TRH_DROME(e-value:2.2e-19;bit-score:93.0)"; Scaffold006 rebuild exon 437263 437659 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.2"; Scaffold006 rebuild exon 437822 437972 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.2"; Scaffold006 rebuild exon 438034 438140 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.2"; Scaffold006 rebuild exon 438344 438576 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.2"; Scaffold006 rebuild exon 438671 438838 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.2"; Scaffold006 rebuild transcript 439184 441764 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.3"; gene_name "(1,2)PAS"; annotation "hypothetical protein."; Pfam "(2)[PAS_3] PAS fold|(1)[PAS] PAS fold"; CDD "(1)PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).(2)PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction."; similar_genes "(1,3)TRH_DROME(e-value:2.2e-19;bit-score:93.0)"; Scaffold006 rebuild exon 439184 439359 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.3"; Scaffold006 rebuild exon 439965 440203 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.3"; Scaffold006 rebuild exon 441309 441404 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.3"; Scaffold006 rebuild exon 441598 441764 . - . gene_id "RvY_11166"; transcript_id "RvY_11166.3"; Scaffold006 rebuild transcript 442482 444558 . - . gene_id "RvY_11167"; transcript_id "RvY_11167.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold006 rebuild exon 442482 443115 . - . gene_id "RvY_11167"; transcript_id "RvY_11167.1"; Scaffold006 rebuild exon 443507 444558 . - . gene_id "RvY_11167"; transcript_id "RvY_11167.1"; Scaffold006 rebuild transcript 446325 447649 . - . gene_id "RvY_11168"; transcript_id "RvY_11168.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR5_HUMAN(e-value:2.1e-15;bit-score:80.0)"; Scaffold006 rebuild exon 446325 446521 . - . gene_id "RvY_11168"; transcript_id "RvY_11168.1"; Scaffold006 rebuild exon 446585 446972 . - . gene_id "RvY_11168"; transcript_id "RvY_11168.1"; Scaffold006 rebuild exon 447203 447649 . - . gene_id "RvY_11168"; transcript_id "RvY_11168.1"; Scaffold006 rebuild transcript 449007 450152 . + . gene_id "RvY_11169"; transcript_id "RvY_11169.1"; gene_name "CENPB"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; CDD "Putative DNA-binding domain in centromere protein B, mouse jerky and transposases."; Scaffold006 rebuild exon 449007 449434 . + . gene_id "RvY_11169"; transcript_id "RvY_11169.1"; Scaffold006 rebuild exon 449609 450152 . + . gene_id "RvY_11169"; transcript_id "RvY_11169.1"; Scaffold006 rebuild transcript 450194 450499 . + . gene_id "RvY_11170"; transcript_id "RvY_11170.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 450194 450499 . + . gene_id "RvY_11170"; transcript_id "RvY_11170.1"; Scaffold006 rebuild transcript 451049 451243 . - . gene_id "RvY_11171"; transcript_id "RvY_11171.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 451049 451243 . - . gene_id "RvY_11171"; transcript_id "RvY_11171.1"; Scaffold006 rebuild transcript 455741 456043 . - . gene_id "RvY_11172"; transcript_id "RvY_11172.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 455741 456043 . - . gene_id "RvY_11172"; transcript_id "RvY_11172.1"; Scaffold006 rebuild transcript 457643 458931 . + . gene_id "RvY_11173"; transcript_id "RvY_11173.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 457643 457712 . + . gene_id "RvY_11173"; transcript_id "RvY_11173.1"; Scaffold006 rebuild exon 458534 458931 . + . gene_id "RvY_11173"; transcript_id "RvY_11173.1"; Scaffold006 rebuild transcript 462055 463754 . + . gene_id "RvY_11174"; transcript_id "RvY_11174.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 462055 462271 . + . gene_id "RvY_11174"; transcript_id "RvY_11174.1"; Scaffold006 rebuild exon 462708 463277 . + . gene_id "RvY_11174"; transcript_id "RvY_11174.1"; Scaffold006 rebuild exon 463450 463754 . + . gene_id "RvY_11174"; transcript_id "RvY_11174.1"; Scaffold006 rebuild transcript 464238 464645 . - . gene_id "RvY_11175"; transcript_id "RvY_11175.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold006 rebuild exon 464238 464645 . - . gene_id "RvY_11175"; transcript_id "RvY_11175.1"; Scaffold006 rebuild transcript 464893 465429 . - . gene_id "RvY_11176"; transcript_id "RvY_11176.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 464893 465429 . - . gene_id "RvY_11176"; transcript_id "RvY_11176.1"; Scaffold006 rebuild transcript 467368 467559 . + . gene_id "RvY_11177"; transcript_id "RvY_11177.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 467368 467559 . + . gene_id "RvY_11177"; transcript_id "RvY_11177.1"; Scaffold006 rebuild transcript 470240 470722 . + . gene_id "RvY_11178"; transcript_id "RvY_11178.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 470240 470722 . + . gene_id "RvY_11178"; transcript_id "RvY_11178.1"; Scaffold006 rebuild transcript 470791 473013 . - . gene_id "RvY_11179"; transcript_id "RvY_11179.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR3_XENLA(e-value:1.4e-14;bit-score:78.0)"; Scaffold006 rebuild exon 470791 470953 . - . gene_id "RvY_11179"; transcript_id "RvY_11179.1"; Scaffold006 rebuild exon 471018 471241 . - . gene_id "RvY_11179"; transcript_id "RvY_11179.1"; Scaffold006 rebuild exon 471316 471974 . - . gene_id "RvY_11179"; transcript_id "RvY_11179.1"; Scaffold006 rebuild exon 472592 472853 . - . gene_id "RvY_11179"; transcript_id "RvY_11179.1"; Scaffold006 rebuild exon 472936 473013 . - . gene_id "RvY_11179"; transcript_id "RvY_11179.1"; Scaffold006 rebuild transcript 473134 474675 . - . gene_id "RvY_11180"; transcript_id "RvY_11180.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 473134 473480 . - . gene_id "RvY_11180"; transcript_id "RvY_11180.1"; Scaffold006 rebuild exon 474600 474675 . - . gene_id "RvY_11180"; transcript_id "RvY_11180.1"; Scaffold006 rebuild transcript 476979 477167 . + . gene_id "RvY_11181"; transcript_id "RvY_11181.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 476979 477167 . + . gene_id "RvY_11181"; transcript_id "RvY_11181.1"; Scaffold006 rebuild transcript 478111 478508 . - . gene_id "RvY_11182"; transcript_id "RvY_11182.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 478111 478152 . - . gene_id "RvY_11182"; transcript_id "RvY_11182.1"; Scaffold006 rebuild exon 478347 478508 . - . gene_id "RvY_11182"; transcript_id "RvY_11182.1"; Scaffold006 rebuild transcript 481058 483971 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; gene_name "PDZ_signaling"; annotation "hypothetical protein."; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; similar_genes "GOPC_PONAB(e-value:3.2e-16;bit-score:83.0)"; Scaffold006 rebuild exon 481058 481118 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 481189 481343 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 481611 481787 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 481850 482025 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 482346 482448 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 482546 482752 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 482838 483002 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 483286 483522 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild exon 483849 483971 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.1"; Scaffold006 rebuild transcript 481058 483540 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; gene_name "PDZ_signaling"; annotation "hypothetical protein."; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; similar_genes "GOPC_PONAB(e-value:3.2e-16;bit-score:83.0)"; Scaffold006 rebuild exon 481058 481118 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 481189 481343 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 481611 481787 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 481850 482025 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 482346 482448 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 482546 482752 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 482838 483002 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild exon 483286 483540 . + . gene_id "RvY_11183"; transcript_id "RvY_11183.2"; Scaffold006 rebuild transcript 485002 489788 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; annotation "Zinc finger protein rotund"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "RN_DROME(e-value:1.2e-85;bit-score:314.0)"; Scaffold006 rebuild exon 485002 485456 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; Scaffold006 rebuild exon 485744 486058 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; Scaffold006 rebuild exon 486150 486369 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; Scaffold006 rebuild exon 488853 489046 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; Scaffold006 rebuild exon 489261 489321 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; Scaffold006 rebuild exon 489699 489788 . - . gene_id "RvY_11184"; transcript_id "RvY_11184.1"; Scaffold006 rebuild transcript 500463 505814 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; annotation "hypothetical protein."; Pfam "[Pacs-1] PACS-1 cytosolic sorting protein"; similar_genes "PACS1_RAT(e-value:2.8e-15;bit-score:80.0)"; Scaffold006 rebuild exon 500463 500623 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 500799 500886 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 500947 501036 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 501305 501430 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 501492 501633 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 501767 501984 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 502061 502209 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 502550 502673 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 502755 503015 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 503097 503201 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 503420 503526 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 503604 503966 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 504040 504085 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 504462 504528 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 504644 504791 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 505047 505354 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 505528 505644 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild exon 505714 505814 . + . gene_id "RvY_11185"; transcript_id "RvY_11185.1"; Scaffold006 rebuild transcript 506392 507526 . - . gene_id "RvY_11186"; transcript_id "RvY_11186.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 506392 506608 . - . gene_id "RvY_11186"; transcript_id "RvY_11186.1"; Scaffold006 rebuild exon 506883 507526 . - . gene_id "RvY_11186"; transcript_id "RvY_11186.1"; Scaffold006 rebuild transcript 507575 507943 . - . gene_id "RvY_11187"; transcript_id "RvY_11187.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 507575 507943 . - . gene_id "RvY_11187"; transcript_id "RvY_11187.1"; Scaffold006 rebuild transcript 507996 508721 . - . gene_id "RvY_11188"; transcript_id "RvY_11188.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 507996 508721 . - . gene_id "RvY_11188"; transcript_id "RvY_11188.1"; Scaffold006 rebuild transcript 508731 509183 . - . gene_id "RvY_11189"; transcript_id "RvY_11189.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 508731 509183 . - . gene_id "RvY_11189"; transcript_id "RvY_11189.1"; Scaffold006 rebuild transcript 513748 513939 . + . gene_id "RvY_11190"; transcript_id "RvY_11190.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 513748 513939 . + . gene_id "RvY_11190"; transcript_id "RvY_11190.1"; Scaffold006 rebuild transcript 515071 515821 . - . gene_id "RvY_11191"; transcript_id "RvY_11191.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 515071 515129 . - . gene_id "RvY_11191"; transcript_id "RvY_11191.1"; Scaffold006 rebuild exon 515224 515401 . - . gene_id "RvY_11191"; transcript_id "RvY_11191.1"; Scaffold006 rebuild exon 515810 515821 . - . gene_id "RvY_11191"; transcript_id "RvY_11191.1"; Scaffold006 rebuild transcript 516589 517033 . - . gene_id "RvY_11192"; transcript_id "RvY_11192.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 516589 516812 . - . gene_id "RvY_11192"; transcript_id "RvY_11192.1"; Scaffold006 rebuild exon 516907 517033 . - . gene_id "RvY_11192"; transcript_id "RvY_11192.1"; Scaffold006 rebuild transcript 517767 518595 . + . gene_id "RvY_11193"; transcript_id "RvY_11193.1"; gene_name "PTZ00182"; annotation "putative 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial"; Pfam "[Transketolase_C] Transketolase, C-terminal domain"; CDD "3-methyl-2-oxobutanate dehydrogenase; Provisional"; EC "EC1.2.4.4"; similar_genes "ODBB_RAT(e-value:1.2e-26;bit-score:118.0)"; Scaffold006 rebuild exon 517767 517799 . + . gene_id "RvY_11193"; transcript_id "RvY_11193.1"; Scaffold006 rebuild exon 517830 518054 . + . gene_id "RvY_11193"; transcript_id "RvY_11193.1"; Scaffold006 rebuild exon 518369 518397 . + . gene_id "RvY_11193"; transcript_id "RvY_11193.1"; Scaffold006 rebuild exon 518466 518595 . + . gene_id "RvY_11193"; transcript_id "RvY_11193.1"; Scaffold006 rebuild transcript 519979 520185 . - . gene_id "RvY_11194"; transcript_id "RvY_11194.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 519979 520185 . - . gene_id "RvY_11194"; transcript_id "RvY_11194.1"; Scaffold006 rebuild transcript 523032 525696 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; gene_name "ATPeVB"; annotation "V-type proton ATPase subunit B"; Pfam "[ATP-synt_ab_C] ATP synthase alpha/beta chain, C terminal domain|[ATP-synt_ab_N] ATP synthase alpha/beta family, beta-barrel domain|[ATP-synt_ab] ATP synthase alpha/beta family, nucleotide-binding domain"; CDD "V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase."; EC "EC3.6.3.14"; KO "K02147"; similar_genes "VATB_HELVI(e-value:5.5e-262;bit-score:899.0)"; Scaffold006 rebuild exon 523032 523319 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; Scaffold006 rebuild exon 523590 523761 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; Scaffold006 rebuild exon 523939 524281 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; Scaffold006 rebuild exon 524353 524476 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; Scaffold006 rebuild exon 524817 525114 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; Scaffold006 rebuild exon 525353 525696 . + . gene_id "RvY_11195"; transcript_id "RvY_11195.1"; Scaffold006 rebuild transcript 526245 526626 . - . gene_id "RvY_11196"; transcript_id "RvY_11196.1"; gene_name "ATPeVH"; annotation "V-type H+-transporting ATPase subunit H [EC:3.6.3.14]"; Pfam "[ATP_synt_H] ATP synthase subunit H"; EC "EC3.6.3.14"; KO "K02153"; Scaffold006 rebuild exon 526245 526338 . - . gene_id "RvY_11196"; transcript_id "RvY_11196.1"; Scaffold006 rebuild exon 526420 526467 . - . gene_id "RvY_11196"; transcript_id "RvY_11196.1"; Scaffold006 rebuild exon 526532 526626 . - . gene_id "RvY_11196"; transcript_id "RvY_11196.1"; Scaffold006 rebuild transcript 527303 528443 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; gene_name "ARL5B"; annotation "ADP-ribosylation factor-like protein 5B"; Pfam "[G-alpha] G-protein alpha subunit|[SRPRB] Signal recognition particle receptor beta subunit|[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date."; KO "K07950"; similar_genes "ARL5B_HUMAN(e-value:6.3e-70;bit-score:261.0)"; Scaffold006 rebuild exon 527303 527348 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; Scaffold006 rebuild exon 527438 527589 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; Scaffold006 rebuild exon 527652 527735 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; Scaffold006 rebuild exon 527793 527940 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; Scaffold006 rebuild exon 528041 528101 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; Scaffold006 rebuild exon 528398 528443 . - . gene_id "RvY_11197"; transcript_id "RvY_11197.1"; Scaffold006 rebuild transcript 529137 531072 . + . gene_id "RvY_11198"; transcript_id "RvY_11198.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 529137 529324 . + . gene_id "RvY_11198"; transcript_id "RvY_11198.1"; Scaffold006 rebuild exon 529383 529579 . + . gene_id "RvY_11198"; transcript_id "RvY_11198.1"; Scaffold006 rebuild exon 529755 530226 . + . gene_id "RvY_11198"; transcript_id "RvY_11198.1"; Scaffold006 rebuild exon 530964 531072 . + . gene_id "RvY_11198"; transcript_id "RvY_11198.1"; Scaffold006 rebuild transcript 531741 533267 . + . gene_id "RvY_11199"; transcript_id "RvY_11199.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold006 rebuild exon 531741 531937 . + . gene_id "RvY_11199"; transcript_id "RvY_11199.1"; Scaffold006 rebuild exon 532000 532142 . + . gene_id "RvY_11199"; transcript_id "RvY_11199.1"; Scaffold006 rebuild exon 532286 532787 . + . gene_id "RvY_11199"; transcript_id "RvY_11199.1"; Scaffold006 rebuild exon 533132 533267 . + . gene_id "RvY_11199"; transcript_id "RvY_11199.1"; Scaffold006 rebuild transcript 533689 534258 . + . gene_id "RvY_11200"; transcript_id "RvY_11200.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 533689 533766 . + . gene_id "RvY_11200"; transcript_id "RvY_11200.1"; Scaffold006 rebuild exon 534226 534258 . + . gene_id "RvY_11200"; transcript_id "RvY_11200.1"; Scaffold006 rebuild transcript 534885 535546 . - . gene_id "RvY_11201"; transcript_id "RvY_11201.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 534885 535021 . - . gene_id "RvY_11201"; transcript_id "RvY_11201.1"; Scaffold006 rebuild exon 535324 535546 . - . gene_id "RvY_11201"; transcript_id "RvY_11201.1"; Scaffold006 rebuild transcript 534961 535269 . - . gene_id "RvY_11201"; transcript_id "RvY_11201.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 534961 535269 . - . gene_id "RvY_11201"; transcript_id "RvY_11201.2"; Scaffold006 rebuild transcript 539189 542414 . + . gene_id "RvY_11202"; transcript_id "RvY_11202.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 539189 540092 . + . gene_id "RvY_11202"; transcript_id "RvY_11202.1"; Scaffold006 rebuild exon 540198 540284 . + . gene_id "RvY_11202"; transcript_id "RvY_11202.1"; Scaffold006 rebuild exon 540559 541422 . + . gene_id "RvY_11202"; transcript_id "RvY_11202.1"; Scaffold006 rebuild exon 542275 542414 . + . gene_id "RvY_11202"; transcript_id "RvY_11202.1"; Scaffold006 rebuild transcript 544481 545369 . - . gene_id "RvY_11203"; transcript_id "RvY_11203.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 544481 544687 . - . gene_id "RvY_11203"; transcript_id "RvY_11203.1"; Scaffold006 rebuild exon 544853 545226 . - . gene_id "RvY_11203"; transcript_id "RvY_11203.1"; Scaffold006 rebuild exon 545246 545369 . - . gene_id "RvY_11203"; transcript_id "RvY_11203.1"; Scaffold006 rebuild transcript 545974 546660 . - . gene_id "RvY_11204"; transcript_id "RvY_11204.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 545974 546131 . - . gene_id "RvY_11204"; transcript_id "RvY_11204.1"; Scaffold006 rebuild exon 546630 546660 . - . gene_id "RvY_11204"; transcript_id "RvY_11204.1"; Scaffold006 rebuild transcript 556202 556770 . + . gene_id "RvY_11205"; transcript_id "RvY_11205.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 556202 556493 . + . gene_id "RvY_11205"; transcript_id "RvY_11205.1"; Scaffold006 rebuild exon 556712 556770 . + . gene_id "RvY_11205"; transcript_id "RvY_11205.1"; Scaffold006 rebuild transcript 553301 556353 . + . gene_id "RvY_11205"; transcript_id "RvY_11205.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 553301 553420 . + . gene_id "RvY_11205"; transcript_id "RvY_11205.2"; Scaffold006 rebuild exon 556171 556353 . + . gene_id "RvY_11205"; transcript_id "RvY_11205.2"; Scaffold006 rebuild transcript 556898 559910 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; gene_name "(1)GRMN"; annotation "(1)glutamate receptor, metabotropic, invertebrate(2,3)hypothetical protein."; Pfam "(1,2)[ANF_receptor] Receptor family ligand binding region|(1,2)[NCD3G] Nine Cysteines Domain of family 3 GPCR|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; KO "(1)K04611"; similar_genes "GRM2_RAT(e-value:1.2e-17;bit-score:88.0)"; Scaffold006 rebuild exon 556898 557399 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; Scaffold006 rebuild exon 557475 557581 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; Scaffold006 rebuild exon 557657 557830 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; Scaffold006 rebuild exon 557893 558393 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; Scaffold006 rebuild exon 558827 559469 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; Scaffold006 rebuild exon 559717 559910 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.1"; Scaffold006 rebuild transcript 557123 559910 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; gene_name "(1)GRMN"; annotation "(1)glutamate receptor, metabotropic, invertebrate(2,3)hypothetical protein."; Pfam "(1,2)[ANF_receptor] Receptor family ligand binding region|(1,2)[NCD3G] Nine Cysteines Domain of family 3 GPCR|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; KO "(1)K04611"; similar_genes "GRM2_RAT(e-value:1.2e-17;bit-score:88.0)"; Scaffold006 rebuild exon 557123 557399 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; Scaffold006 rebuild exon 557475 557581 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; Scaffold006 rebuild exon 557657 557830 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; Scaffold006 rebuild exon 557893 558393 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; Scaffold006 rebuild exon 558827 559469 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; Scaffold006 rebuild exon 559717 559910 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.2"; Scaffold006 rebuild transcript 558010 559910 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.3"; gene_name "(1)GRMN"; annotation "(1)glutamate receptor, metabotropic, invertebrate(2,3)hypothetical protein."; Pfam "(1,2)[ANF_receptor] Receptor family ligand binding region|(1,2)[NCD3G] Nine Cysteines Domain of family 3 GPCR|[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; KO "(1)K04611"; similar_genes "GRM2_RAT(e-value:1.2e-17;bit-score:88.0)"; Scaffold006 rebuild exon 558010 558393 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.3"; Scaffold006 rebuild exon 558827 559469 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.3"; Scaffold006 rebuild exon 559717 559910 . + . gene_id "RvY_11206"; transcript_id "RvY_11206.3"; Scaffold006 rebuild transcript 560063 560386 . - . gene_id "RvY_11207"; transcript_id "RvY_11207.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 560063 560271 . - . gene_id "RvY_11207"; transcript_id "RvY_11207.1"; Scaffold006 rebuild exon 560329 560386 . - . gene_id "RvY_11207"; transcript_id "RvY_11207.1"; Scaffold006 rebuild transcript 560592 560789 . - . gene_id "RvY_11208"; transcript_id "RvY_11208.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 560592 560789 . - . gene_id "RvY_11208"; transcript_id "RvY_11208.1"; Scaffold006 rebuild transcript 566972 567190 . - . gene_id "RvY_11209"; transcript_id "RvY_11209.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold006 rebuild exon 566972 567190 . - . gene_id "RvY_11209"; transcript_id "RvY_11209.1"; Scaffold006 rebuild transcript 567288 567966 . - . gene_id "RvY_11210"; transcript_id "RvY_11210.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 567288 567532 . - . gene_id "RvY_11210"; transcript_id "RvY_11210.1"; Scaffold006 rebuild exon 567629 567854 . - . gene_id "RvY_11210"; transcript_id "RvY_11210.1"; Scaffold006 rebuild exon 567940 567966 . - . gene_id "RvY_11210"; transcript_id "RvY_11210.1"; Scaffold006 rebuild transcript 568799 569490 . + . gene_id "RvY_11211"; transcript_id "RvY_11211.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 568799 568927 . + . gene_id "RvY_11211"; transcript_id "RvY_11211.1"; Scaffold006 rebuild exon 569121 569241 . + . gene_id "RvY_11211"; transcript_id "RvY_11211.1"; Scaffold006 rebuild exon 569315 569490 . + . gene_id "RvY_11211"; transcript_id "RvY_11211.1"; Scaffold006 rebuild transcript 569758 570497 . + . gene_id "RvY_11212"; transcript_id "RvY_11212.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 569758 569976 . + . gene_id "RvY_11212"; transcript_id "RvY_11212.1"; Scaffold006 rebuild exon 570048 570497 . + . gene_id "RvY_11212"; transcript_id "RvY_11212.1"; Scaffold006 rebuild transcript 571071 571966 . - . gene_id "RvY_11213"; transcript_id "RvY_11213.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 571071 571195 . - . gene_id "RvY_11213"; transcript_id "RvY_11213.1"; Scaffold006 rebuild exon 571292 571517 . - . gene_id "RvY_11213"; transcript_id "RvY_11213.1"; Scaffold006 rebuild exon 571682 571966 . - . gene_id "RvY_11213"; transcript_id "RvY_11213.1"; Scaffold006 rebuild transcript 574196 575214 . + . gene_id "RvY_11214"; transcript_id "RvY_11214.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 574196 574557 . + . gene_id "RvY_11214"; transcript_id "RvY_11214.1"; Scaffold006 rebuild exon 574629 575214 . + . gene_id "RvY_11214"; transcript_id "RvY_11214.1"; Scaffold006 rebuild transcript 576116 576976 . - . gene_id "RvY_11215"; transcript_id "RvY_11215.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 576116 576337 . - . gene_id "RvY_11215"; transcript_id "RvY_11215.1"; Scaffold006 rebuild exon 576857 576976 . - . gene_id "RvY_11215"; transcript_id "RvY_11215.1"; Scaffold006 rebuild transcript 580079 581673 . - . gene_id "RvY_11216"; transcript_id "RvY_11216.1"; gene_name "GNAQ"; annotation "Guanine nucleotide-binding protein G(q) subunit alpha"; Pfam "[G-alpha] G-protein alpha subunit|[Arf] ADP-ribosylation factor family"; CDD "G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute."; KO "K04634"; similar_genes "GNAQ_MOUSE(e-value:1.6e-172;bit-score:602.0)"; Scaffold006 rebuild exon 580079 580596 . - . gene_id "RvY_11216"; transcript_id "RvY_11216.1"; Scaffold006 rebuild exon 581127 581673 . - . gene_id "RvY_11216"; transcript_id "RvY_11216.1"; Scaffold006 rebuild transcript 583033 583457 . - . gene_id "RvY_11217"; transcript_id "RvY_11217.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 583033 583061 . - . gene_id "RvY_11217"; transcript_id "RvY_11217.1"; Scaffold006 rebuild exon 583187 583457 . - . gene_id "RvY_11217"; transcript_id "RvY_11217.1"; Scaffold006 rebuild transcript 585180 590197 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold006 rebuild exon 585180 585669 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; Scaffold006 rebuild exon 585790 586355 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; Scaffold006 rebuild exon 586668 587030 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; Scaffold006 rebuild exon 587099 588698 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; Scaffold006 rebuild exon 588962 589528 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; Scaffold006 rebuild exon 589872 590197 . + . gene_id "RvY_11218"; transcript_id "RvY_11218.1"; Scaffold006 rebuild transcript 590476 590814 . + . gene_id "RvY_11219"; transcript_id "RvY_11219.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 590476 590814 . + . gene_id "RvY_11219"; transcript_id "RvY_11219.1"; Scaffold006 rebuild transcript 592889 593922 . - . gene_id "RvY_11220"; transcript_id "RvY_11220.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 592889 593223 . - . gene_id "RvY_11220"; transcript_id "RvY_11220.1"; Scaffold006 rebuild exon 593295 593565 . - . gene_id "RvY_11220"; transcript_id "RvY_11220.1"; Scaffold006 rebuild exon 593630 593787 . - . gene_id "RvY_11220"; transcript_id "RvY_11220.1"; Scaffold006 rebuild exon 593868 593922 . - . gene_id "RvY_11220"; transcript_id "RvY_11220.1"; Scaffold006 rebuild transcript 594528 598081 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold006 rebuild exon 594528 594751 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild exon 596157 596508 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild exon 596596 596796 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild exon 596879 596948 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild exon 597190 597296 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild exon 597376 597471 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild exon 597947 598081 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.1"; Scaffold006 rebuild transcript 596134 598042 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[STAS]|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold006 rebuild exon 596134 596508 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; Scaffold006 rebuild exon 596596 596796 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; Scaffold006 rebuild exon 596879 596948 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; Scaffold006 rebuild exon 597190 597296 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; Scaffold006 rebuild exon 597376 597471 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; Scaffold006 rebuild exon 597947 598042 . - . gene_id "RvY_11221"; transcript_id "RvY_11221.2"; Scaffold006 rebuild transcript 602310 602492 . + . gene_id "RvY_11222"; transcript_id "RvY_11222.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 602310 602492 . + . gene_id "RvY_11222"; transcript_id "RvY_11222.1"; Scaffold006 rebuild transcript 602706 603768 . - . gene_id "RvY_11223"; transcript_id "RvY_11223.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 602706 603134 . - . gene_id "RvY_11223"; transcript_id "RvY_11223.1"; Scaffold006 rebuild exon 603703 603768 . - . gene_id "RvY_11223"; transcript_id "RvY_11223.1"; Scaffold006 rebuild transcript 603807 604601 . - . gene_id "RvY_11224"; transcript_id "RvY_11224.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold006 rebuild exon 603807 604162 . - . gene_id "RvY_11224"; transcript_id "RvY_11224.1"; Scaffold006 rebuild exon 604265 604601 . - . gene_id "RvY_11224"; transcript_id "RvY_11224.1"; Scaffold006 rebuild transcript 605835 606146 . - . gene_id "RvY_11225"; transcript_id "RvY_11225.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 605835 606146 . - . gene_id "RvY_11225"; transcript_id "RvY_11225.1"; Scaffold006 rebuild transcript 606802 607134 . - . gene_id "RvY_11226"; transcript_id "RvY_11226.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 606802 607134 . - . gene_id "RvY_11226"; transcript_id "RvY_11226.1"; Scaffold006 rebuild transcript 607174 607632 . + . gene_id "RvY_11227"; transcript_id "RvY_11227.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 607174 607632 . + . gene_id "RvY_11227"; transcript_id "RvY_11227.1"; Scaffold006 rebuild transcript 609158 609585 . - . gene_id "RvY_11228"; transcript_id "RvY_11228.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 609158 609204 . - . gene_id "RvY_11228"; transcript_id "RvY_11228.1"; Scaffold006 rebuild exon 609513 609585 . - . gene_id "RvY_11228"; transcript_id "RvY_11228.1"; Scaffold006 rebuild transcript 611136 613154 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; gene_name "P2RX4"; annotation "purinergic receptor P2X, ligand-gated ion channel 4"; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; KO "K05218"; similar_genes "(1)P2RX4_HUMAN(e-value:1.9e-18;bit-score:90.0)(2)P2RX2_RAT(e-value:1.8e-14;bit-score:77.0)"; Scaffold006 rebuild exon 611136 611185 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 611265 611357 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 611434 611677 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 611957 612099 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 612171 612251 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 612360 612638 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 612699 612867 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 612934 613035 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild exon 613104 613154 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.1"; Scaffold006 rebuild transcript 611136 612882 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; gene_name "P2RX4"; annotation "purinergic receptor P2X, ligand-gated ion channel 4"; Pfam "[P2X_receptor] ATP P2X receptor"; CDD "cation transporter protein. ACC channels are probably hetero- or homomultimers and transport small monovalent cations (Me+). Some also transport Ca2+; a few also transport small metabolites."; KO "K05218"; similar_genes "(1)P2RX4_HUMAN(e-value:1.9e-18;bit-score:90.0)(2)P2RX2_RAT(e-value:1.8e-14;bit-score:77.0)"; Scaffold006 rebuild exon 611136 611185 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild exon 611265 611357 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild exon 611434 611677 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild exon 611939 612099 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild exon 612171 612251 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild exon 612360 612638 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild exon 612699 612882 . + . gene_id "RvY_11229"; transcript_id "RvY_11229.2"; Scaffold006 rebuild transcript 614303 614503 . - . gene_id "RvY_11230"; transcript_id "RvY_11230.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 614303 614503 . - . gene_id "RvY_11230"; transcript_id "RvY_11230.1"; Scaffold006 rebuild transcript 615480 616379 . - . gene_id "RvY_11231"; transcript_id "RvY_11231.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 615480 616379 . - . gene_id "RvY_11231"; transcript_id "RvY_11231.2"; Scaffold006 rebuild transcript 620584 621958 . + . gene_id "RvY_11232"; transcript_id "RvY_11232.1"; annotation "hypothetical protein."; Pfam "[YccV-like] Hemimethylated DNA-binding protein YccV like"; Scaffold006 rebuild exon 620584 620690 . + . gene_id "RvY_11232"; transcript_id "RvY_11232.1"; Scaffold006 rebuild exon 620841 621118 . + . gene_id "RvY_11232"; transcript_id "RvY_11232.1"; Scaffold006 rebuild exon 621422 621585 . + . gene_id "RvY_11232"; transcript_id "RvY_11232.1"; Scaffold006 rebuild exon 621668 621778 . + . gene_id "RvY_11232"; transcript_id "RvY_11232.1"; Scaffold006 rebuild exon 621854 621958 . + . gene_id "RvY_11232"; transcript_id "RvY_11232.1"; Scaffold006 rebuild transcript 623827 624230 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 623827 624015 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.1"; Scaffold006 rebuild exon 624081 624230 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.1"; Scaffold006 rebuild transcript 623913 624230 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 623913 624230 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.2"; Scaffold006 rebuild transcript 624055 624297 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 624055 624297 . - . gene_id "RvY_11233"; transcript_id "RvY_11233.3"; Scaffold006 rebuild transcript 624951 625679 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.1"; annotation "hypothetical protein."; Pfam "[Cystatin]"; Scaffold006 rebuild exon 624951 624964 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.1"; Scaffold006 rebuild exon 625019 625172 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.1"; Scaffold006 rebuild exon 625359 625472 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.1"; Scaffold006 rebuild exon 625560 625679 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.1"; Scaffold006 rebuild transcript 625020 625238 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.2"; annotation "hypothetical protein."; Pfam "[Cystatin]"; Scaffold006 rebuild exon 625020 625238 . + . gene_id "RvY_11234"; transcript_id "RvY_11234.2"; Scaffold006 rebuild transcript 629134 629964 . - . gene_id "RvY_11235"; transcript_id "RvY_11235.1"; annotation "hypothetical protein."; Pfam "[Cystatin]"; KO "K13907"; Scaffold006 rebuild exon 629134 629253 . - . gene_id "RvY_11235"; transcript_id "RvY_11235.1"; Scaffold006 rebuild exon 629434 629544 . - . gene_id "RvY_11235"; transcript_id "RvY_11235.1"; Scaffold006 rebuild exon 629642 629822 . - . gene_id "RvY_11235"; transcript_id "RvY_11235.1"; Scaffold006 rebuild exon 629951 629964 . - . gene_id "RvY_11235"; transcript_id "RvY_11235.1"; Scaffold006 rebuild transcript 630453 631070 . - . gene_id "RvY_11236"; transcript_id "RvY_11236.1"; gene_name "CY"; annotation "hypothetical protein."; Pfam "[Cystatin]"; CDD "Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains."; KO "K13907"; Scaffold006 rebuild exon 630453 630572 . - . gene_id "RvY_11236"; transcript_id "RvY_11236.1"; Scaffold006 rebuild exon 630646 630753 . - . gene_id "RvY_11236"; transcript_id "RvY_11236.1"; Scaffold006 rebuild exon 630845 630977 . - . gene_id "RvY_11236"; transcript_id "RvY_11236.1"; Scaffold006 rebuild exon 631054 631070 . - . gene_id "RvY_11236"; transcript_id "RvY_11236.1"; Scaffold006 rebuild transcript 631971 635412 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; gene_name "adk"; annotation "adenylate kinase [EC:2.7.4.3]"; Pfam "[Dpy-30] Dpy-30 motif|[ADK] Adenylate kinase"; EC "EC2.7.4.3"; KO "K00939"; similar_genes "KAD7_MACFA(e-value:1.7e-06;bit-score:51.0)"; Scaffold006 rebuild exon 631971 632545 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; Scaffold006 rebuild exon 632709 633009 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; Scaffold006 rebuild exon 633071 633397 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; Scaffold006 rebuild exon 633827 634265 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; Scaffold006 rebuild exon 634336 634379 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; Scaffold006 rebuild exon 634771 635412 . + . gene_id "RvY_11237"; transcript_id "RvY_11237.1"; Scaffold006 rebuild transcript 636242 636604 . - . gene_id "RvY_11238"; transcript_id "RvY_11238.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 636242 636604 . - . gene_id "RvY_11238"; transcript_id "RvY_11238.1"; Scaffold006 rebuild transcript 638390 640629 . + . gene_id "RvY_11239"; transcript_id "RvY_11239.1"; gene_name "TSP1"; annotation "hypothetical protein."; Pfam "[TSP_1] Thrombospondin type 1 domain"; CDD "Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta."; similar_genes "HMCN1_HUMAN(e-value:1.6e-11;bit-score:67.0)"; Scaffold006 rebuild exon 638390 639041 . + . gene_id "RvY_11239"; transcript_id "RvY_11239.1"; Scaffold006 rebuild exon 639107 639255 . + . gene_id "RvY_11239"; transcript_id "RvY_11239.1"; Scaffold006 rebuild exon 640015 640629 . + . gene_id "RvY_11239"; transcript_id "RvY_11239.1"; Scaffold006 rebuild transcript 641800 642562 . + . gene_id "RvY_11240"; transcript_id "RvY_11240.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 641800 641927 . + . gene_id "RvY_11240"; transcript_id "RvY_11240.1"; Scaffold006 rebuild exon 642295 642562 . + . gene_id "RvY_11240"; transcript_id "RvY_11240.1"; Scaffold006 rebuild transcript 643079 643419 . + . gene_id "RvY_11241"; transcript_id "RvY_11241.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 643079 643208 . + . gene_id "RvY_11241"; transcript_id "RvY_11241.1"; Scaffold006 rebuild exon 643268 643419 . + . gene_id "RvY_11241"; transcript_id "RvY_11241.1"; Scaffold006 rebuild transcript 643732 645665 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "(1)PITX2_CHICK(e-value:2.8e-17;bit-score:86.0)(2)PITX1_DROME(e-value:1.2e-11;bit-score:68.0)"; Scaffold006 rebuild exon 643732 644068 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.1"; Scaffold006 rebuild exon 645238 645405 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.1"; Scaffold006 rebuild exon 645496 645665 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.1"; Scaffold006 rebuild transcript 645534 648575 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.2"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "(1)PITX2_CHICK(e-value:2.8e-17;bit-score:86.0)(2)PITX1_DROME(e-value:1.2e-11;bit-score:68.0)"; Scaffold006 rebuild exon 645534 645590 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.2"; Scaffold006 rebuild exon 647958 648575 . + . gene_id "RvY_11242"; transcript_id "RvY_11242.2"; Scaffold006 rebuild transcript 650137 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 650137 650763 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.1"; Scaffold006 rebuild exon 650853 651278 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.1"; Scaffold006 rebuild exon 651357 651467 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.1"; Scaffold006 rebuild exon 651546 651760 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.1"; Scaffold006 rebuild exon 651832 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.1"; Scaffold006 rebuild transcript 650137 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 650137 650763 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; Scaffold006 rebuild exon 650853 651011 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; Scaffold006 rebuild exon 651123 651278 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; Scaffold006 rebuild exon 651357 651467 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; Scaffold006 rebuild exon 651546 651760 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; Scaffold006 rebuild exon 651832 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.2"; Scaffold006 rebuild transcript 650541 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 650541 651011 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.3"; Scaffold006 rebuild exon 651123 651278 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.3"; Scaffold006 rebuild exon 651357 651467 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.3"; Scaffold006 rebuild exon 651546 651760 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.3"; Scaffold006 rebuild exon 651832 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.3"; Scaffold006 rebuild transcript 650902 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.4"; annotation "hypothetical protein."; Scaffold006 rebuild exon 650902 651011 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.4"; Scaffold006 rebuild exon 651119 651278 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.4"; Scaffold006 rebuild exon 651357 651467 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.4"; Scaffold006 rebuild exon 651546 651760 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.4"; Scaffold006 rebuild exon 651832 652105 . - . gene_id "RvY_11243"; transcript_id "RvY_11243.4"; Scaffold006 rebuild transcript 652677 653603 . - . gene_id "RvY_11244"; transcript_id "RvY_11244.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "DMX1B_DANRE(e-value:3.8e-21;bit-score:99.0)"; Scaffold006 rebuild exon 652677 652882 . - . gene_id "RvY_11244"; transcript_id "RvY_11244.1"; Scaffold006 rebuild exon 653027 653603 . - . gene_id "RvY_11244"; transcript_id "RvY_11244.1"; Scaffold006 rebuild transcript 657166 657591 . - . gene_id "RvY_11245"; transcript_id "RvY_11245.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 657166 657359 . - . gene_id "RvY_11245"; transcript_id "RvY_11245.1"; Scaffold006 rebuild exon 657456 657591 . - . gene_id "RvY_11245"; transcript_id "RvY_11245.1"; Scaffold006 rebuild transcript 658731 663849 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; annotation "hypothetical protein."; Pfam "[7tm_2] 7 transmembrane receptor (Secretin family)|[Pentaxin] Pentaxin family|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily"; Scaffold006 rebuild exon 658731 658918 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 659007 659062 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 659195 659357 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 659553 659724 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 659807 660125 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 660451 660887 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 660955 661074 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 661148 661239 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 661327 661586 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 661753 661934 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 662002 662060 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 662125 662358 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 662431 662530 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 662589 662694 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 662764 662951 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 663012 663097 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 663168 663471 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild exon 663547 663849 . + . gene_id "RvY_11246"; transcript_id "RvY_11246.1"; Scaffold006 rebuild transcript 664572 665006 . + . gene_id "RvY_11247"; transcript_id "RvY_11247.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 664572 665006 . + . gene_id "RvY_11247"; transcript_id "RvY_11247.1"; Scaffold006 rebuild transcript 665038 665388 . + . gene_id "RvY_11248"; transcript_id "RvY_11248.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 665038 665388 . + . gene_id "RvY_11248"; transcript_id "RvY_11248.1"; Scaffold006 rebuild transcript 666614 667200 . + . gene_id "RvY_11249"; transcript_id "RvY_11249.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 666614 667054 . + . gene_id "RvY_11249"; transcript_id "RvY_11249.1"; Scaffold006 rebuild exon 667183 667200 . + . gene_id "RvY_11249"; transcript_id "RvY_11249.1"; Scaffold006 rebuild transcript 666614 667069 . + . gene_id "RvY_11249"; transcript_id "RvY_11249.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 666614 667069 . + . gene_id "RvY_11249"; transcript_id "RvY_11249.2"; Scaffold006 rebuild transcript 668903 669325 . - . gene_id "RvY_11250"; transcript_id "RvY_11250.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 668903 669325 . - . gene_id "RvY_11250"; transcript_id "RvY_11250.1"; Scaffold006 rebuild transcript 670510 670869 . - . gene_id "RvY_11251"; transcript_id "RvY_11251.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 670510 670869 . - . gene_id "RvY_11251"; transcript_id "RvY_11251.1"; Scaffold006 rebuild transcript 672150 672685 . + . gene_id "RvY_11252"; transcript_id "RvY_11252.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 672150 672248 . + . gene_id "RvY_11252"; transcript_id "RvY_11252.1"; Scaffold006 rebuild exon 672335 672685 . + . gene_id "RvY_11252"; transcript_id "RvY_11252.1"; Scaffold006 rebuild transcript 672347 672680 . + . gene_id "RvY_11252"; transcript_id "RvY_11252.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 672347 672569 . + . gene_id "RvY_11252"; transcript_id "RvY_11252.2"; Scaffold006 rebuild exon 672670 672680 . + . gene_id "RvY_11252"; transcript_id "RvY_11252.2"; Scaffold006 rebuild transcript 676247 676618 . - . gene_id "RvY_11253"; transcript_id "RvY_11253.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 676247 676618 . - . gene_id "RvY_11253"; transcript_id "RvY_11253.1"; Scaffold006 rebuild transcript 678403 679566 . - . gene_id "RvY_11254"; transcript_id "RvY_11254.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 678403 678571 . - . gene_id "RvY_11254"; transcript_id "RvY_11254.1"; Scaffold006 rebuild exon 678831 678909 . - . gene_id "RvY_11254"; transcript_id "RvY_11254.1"; Scaffold006 rebuild exon 678974 679112 . - . gene_id "RvY_11254"; transcript_id "RvY_11254.1"; Scaffold006 rebuild exon 679181 679354 . - . gene_id "RvY_11254"; transcript_id "RvY_11254.1"; Scaffold006 rebuild exon 679459 679566 . - . gene_id "RvY_11254"; transcript_id "RvY_11254.1"; Scaffold006 rebuild transcript 680070 680438 . - . gene_id "RvY_11255"; transcript_id "RvY_11255.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 680070 680438 . - . gene_id "RvY_11255"; transcript_id "RvY_11255.1"; Scaffold006 rebuild transcript 680972 681932 . - . gene_id "RvY_11256"; transcript_id "RvY_11256.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 680972 681196 . - . gene_id "RvY_11256"; transcript_id "RvY_11256.1"; Scaffold006 rebuild exon 681717 681932 . - . gene_id "RvY_11256"; transcript_id "RvY_11256.1"; Scaffold006 rebuild transcript 683750 686405 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; gene_name "Band_7_stomatin_like"; annotation "Band 7 protein AGAP004871"; Pfam "[Band_7] SPFH domain / Band 7 family"; CDD "Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch."; similar_genes "BND7A_ANOGA(e-value:7.4e-107;bit-score:384.0)"; Scaffold006 rebuild exon 683750 683944 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684047 684125 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684237 684317 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684400 684455 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684555 684602 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684660 684694 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684782 684803 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 684930 684978 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 685054 685078 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 685165 685197 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 685300 685366 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 685645 685748 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild exon 686189 686405 . - . gene_id "RvY_11257"; transcript_id "RvY_11257.1"; Scaffold006 rebuild transcript 687110 688530 . - . gene_id "RvY_11258"; transcript_id "RvY_11258.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 687110 687703 . - . gene_id "RvY_11258"; transcript_id "RvY_11258.1"; Scaffold006 rebuild exon 687793 688530 . - . gene_id "RvY_11258"; transcript_id "RvY_11258.1"; Scaffold006 rebuild transcript 689488 696253 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; gene_name "MAPK8IP3"; annotation "putative C-Jun-amino-terminal kinase-interacting protein 4"; Pfam "[Jnk-SapK_ap_N] JNK_SAPK-associated protein-1"; KO "K04436"; similar_genes "JIP4_HUMAN(e-value:3.5e-28;bit-score:123.0)"; Scaffold006 rebuild exon 689488 689630 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 689775 690059 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 690290 690403 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 690505 690676 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 691004 691223 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 691466 691546 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 691620 691938 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 692080 692374 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 692436 692631 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 692945 693130 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 693438 693767 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 693961 694017 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 694098 694155 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 694254 694283 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 694413 694505 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 694572 694624 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 694936 695115 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 695224 695321 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 695394 695464 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 695561 695681 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild exon 695903 696253 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.1"; Scaffold006 rebuild transcript 689488 696362 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; gene_name "MAPK8IP3"; annotation "putative C-Jun-amino-terminal kinase-interacting protein 4"; Pfam "[Jnk-SapK_ap_N] JNK_SAPK-associated protein-1"; KO "K04436"; similar_genes "JIP4_HUMAN(e-value:3.5e-28;bit-score:123.0)"; Scaffold006 rebuild exon 689488 689630 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 689775 690059 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 690290 690403 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 690505 690676 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 691004 691223 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 691466 691546 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 691620 691938 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 692080 692374 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 692436 692631 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 692945 693130 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 693438 693767 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 693961 694017 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 694098 694155 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 694413 694505 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 694572 694624 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 694936 695115 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 695224 695321 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 695394 695464 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 695561 695681 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 695903 696266 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild exon 696361 696362 . - . gene_id "RvY_11259"; transcript_id "RvY_11259.2"; Scaffold006 rebuild transcript 696772 698007 . - . gene_id "RvY_11260"; transcript_id "RvY_11260.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 696772 698007 . - . gene_id "RvY_11260"; transcript_id "RvY_11260.1"; Scaffold006 rebuild transcript 699836 702287 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold006 rebuild exon 699836 699950 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 700009 700096 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 700153 700288 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 700399 700581 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 700654 700701 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 700774 700926 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 700991 701068 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 701137 701175 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 701238 701281 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 701365 701675 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 701738 701795 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild exon 701879 702287 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.1"; Scaffold006 rebuild transcript 700118 701533 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold006 rebuild exon 700118 700288 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 700399 700581 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 700654 700701 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 700774 700926 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 700991 701068 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 701137 701175 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 701238 701281 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild exon 701365 701533 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.2"; Scaffold006 rebuild transcript 701294 702287 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.3"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold006 rebuild exon 701294 701675 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.3"; Scaffold006 rebuild exon 701738 701795 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.3"; Scaffold006 rebuild exon 701879 702287 . - . gene_id "RvY_11261"; transcript_id "RvY_11261.3"; Scaffold006 rebuild transcript 704591 705761 . - . gene_id "RvY_11262"; transcript_id "RvY_11262.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; Scaffold006 rebuild exon 704591 704766 . - . gene_id "RvY_11262"; transcript_id "RvY_11262.1"; Scaffold006 rebuild exon 704911 705078 . - . gene_id "RvY_11262"; transcript_id "RvY_11262.1"; Scaffold006 rebuild exon 705269 705412 . - . gene_id "RvY_11262"; transcript_id "RvY_11262.1"; Scaffold006 rebuild exon 705689 705761 . - . gene_id "RvY_11262"; transcript_id "RvY_11262.1"; Scaffold006 rebuild transcript 707245 710896 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; gene_name "MLH1"; annotation "putative DNA mismatch repair protein Mlh1"; Pfam "[DNA_mis_repair] DNA mismatch repair protein, C-terminal domain|[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[HATPase_c_3] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase"; CDD "DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]"; KO "K08734"; similar_genes "MLH1_HUMAN(e-value:2.2e-40;bit-score:163.0)"; Scaffold006 rebuild exon 707245 707586 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 707716 707947 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 708235 708620 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 708901 709174 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 709239 709332 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 709623 709735 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 709808 710031 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 710303 710548 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 710613 710703 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild exon 710760 710896 . - . gene_id "RvY_11263"; transcript_id "RvY_11263.1"; Scaffold006 rebuild transcript 711704 713023 . - . gene_id "RvY_11264"; transcript_id "RvY_11264.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 711704 711919 . - . gene_id "RvY_11264"; transcript_id "RvY_11264.1"; Scaffold006 rebuild exon 712128 712265 . - . gene_id "RvY_11264"; transcript_id "RvY_11264.1"; Scaffold006 rebuild exon 712401 712478 . - . gene_id "RvY_11264"; transcript_id "RvY_11264.1"; Scaffold006 rebuild exon 712787 713023 . - . gene_id "RvY_11264"; transcript_id "RvY_11264.1"; Scaffold006 rebuild transcript 713119 713582 . - . gene_id "RvY_11265"; transcript_id "RvY_11265.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 713119 713147 . - . gene_id "RvY_11265"; transcript_id "RvY_11265.1"; Scaffold006 rebuild exon 713264 713582 . - . gene_id "RvY_11265"; transcript_id "RvY_11265.1"; Scaffold006 rebuild transcript 714583 715513 . - . gene_id "RvY_11266"; transcript_id "RvY_11266.1"; annotation "hypothetical protein."; Pfam "[LysM]"; Scaffold006 rebuild exon 714583 714789 . - . gene_id "RvY_11266"; transcript_id "RvY_11266.1"; Scaffold006 rebuild exon 715319 715513 . - . gene_id "RvY_11266"; transcript_id "RvY_11266.1"; Scaffold006 rebuild transcript 716098 716682 . + . gene_id "RvY_11267"; transcript_id "RvY_11267.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 716098 716682 . + . gene_id "RvY_11267"; transcript_id "RvY_11267.1"; Scaffold006 rebuild transcript 717152 717889 . + . gene_id "RvY_11268"; transcript_id "RvY_11268.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold006 rebuild exon 717152 717889 . + . gene_id "RvY_11268"; transcript_id "RvY_11268.1"; Scaffold006 rebuild transcript 720911 721252 . + . gene_id "RvY_11269"; transcript_id "RvY_11269.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 720911 721252 . + . gene_id "RvY_11269"; transcript_id "RvY_11269.1"; Scaffold006 rebuild transcript 721680 723801 . - . gene_id "RvY_11270"; transcript_id "RvY_11270.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold006 rebuild exon 721680 722983 . - . gene_id "RvY_11270"; transcript_id "RvY_11270.1"; Scaffold006 rebuild exon 723058 723205 . - . gene_id "RvY_11270"; transcript_id "RvY_11270.1"; Scaffold006 rebuild exon 723510 723580 . - . gene_id "RvY_11270"; transcript_id "RvY_11270.1"; Scaffold006 rebuild exon 723642 723801 . - . gene_id "RvY_11270"; transcript_id "RvY_11270.1"; Scaffold006 rebuild transcript 725116 725406 . + . gene_id "RvY_11271"; transcript_id "RvY_11271.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 725116 725406 . + . gene_id "RvY_11271"; transcript_id "RvY_11271.1"; Scaffold006 rebuild transcript 730988 733122 . - . gene_id "RvY_11272"; transcript_id "RvY_11272.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 730988 731148 . - . gene_id "RvY_11272"; transcript_id "RvY_11272.1"; Scaffold006 rebuild exon 731225 731284 . - . gene_id "RvY_11272"; transcript_id "RvY_11272.1"; Scaffold006 rebuild exon 731798 731902 . - . gene_id "RvY_11272"; transcript_id "RvY_11272.1"; Scaffold006 rebuild exon 732125 732205 . - . gene_id "RvY_11272"; transcript_id "RvY_11272.1"; Scaffold006 rebuild exon 732900 733122 . - . gene_id "RvY_11272"; transcript_id "RvY_11272.1"; Scaffold006 rebuild transcript 733889 737554 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 733889 734334 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 734421 734608 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 734716 735012 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 735087 735259 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 735269 735768 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 735863 736311 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 736411 736830 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 736969 737231 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 737318 737402 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild exon 737499 737554 . - . gene_id "RvY_11273"; transcript_id "RvY_11273.1"; Scaffold006 rebuild transcript 738077 739048 . - . gene_id "RvY_11274"; transcript_id "RvY_11274.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 738077 738472 . - . gene_id "RvY_11274"; transcript_id "RvY_11274.1"; Scaffold006 rebuild exon 738601 738857 . - . gene_id "RvY_11274"; transcript_id "RvY_11274.1"; Scaffold006 rebuild exon 738925 739048 . - . gene_id "RvY_11274"; transcript_id "RvY_11274.1"; Scaffold006 rebuild transcript 739810 740049 . + . gene_id "RvY_11275"; transcript_id "RvY_11275.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 739810 740049 . + . gene_id "RvY_11275"; transcript_id "RvY_11275.1"; Scaffold006 rebuild transcript 742734 743584 . + . gene_id "RvY_11276"; transcript_id "RvY_11276.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related ""chromo shadow"" domain."; Scaffold006 rebuild exon 742734 743115 . + . gene_id "RvY_11276"; transcript_id "RvY_11276.1"; Scaffold006 rebuild exon 743376 743584 . + . gene_id "RvY_11276"; transcript_id "RvY_11276.1"; Scaffold006 rebuild transcript 742734 743371 . + . gene_id "RvY_11276"; transcript_id "RvY_11276.2"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related ""chromo shadow"" domain."; Scaffold006 rebuild exon 742734 743115 . + . gene_id "RvY_11276"; transcript_id "RvY_11276.2"; Scaffold006 rebuild exon 743370 743371 . + . gene_id "RvY_11276"; transcript_id "RvY_11276.2"; Scaffold006 rebuild transcript 744372 746078 . - . gene_id "RvY_11277"; transcript_id "RvY_11277.1"; gene_name "PRK06347"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_19] Chitinase class I|[LysM]"; CDD "autolysin; Reviewed"; Scaffold006 rebuild exon 744372 745388 . - . gene_id "RvY_11277"; transcript_id "RvY_11277.1"; Scaffold006 rebuild exon 745623 746078 . - . gene_id "RvY_11277"; transcript_id "RvY_11277.1"; Scaffold006 rebuild transcript 746349 747654 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 746349 746538 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild exon 746613 746706 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild exon 746769 746919 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild exon 746995 747174 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild exon 747242 747292 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild exon 747362 747499 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild exon 747589 747654 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.1"; Scaffold006 rebuild transcript 746249 747108 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 746249 746328 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.2"; Scaffold006 rebuild exon 746420 746538 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.2"; Scaffold006 rebuild exon 746613 746706 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.2"; Scaffold006 rebuild exon 746769 746919 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.2"; Scaffold006 rebuild exon 746995 747108 . - . gene_id "RvY_11278"; transcript_id "RvY_11278.2"; Scaffold006 rebuild transcript 747820 748771 . - . gene_id "RvY_11279"; transcript_id "RvY_11279.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 747820 748163 . - . gene_id "RvY_11279"; transcript_id "RvY_11279.1"; Scaffold006 rebuild exon 748396 748771 . - . gene_id "RvY_11279"; transcript_id "RvY_11279.1"; Scaffold006 rebuild transcript 750477 750816 . + . gene_id "RvY_11280"; transcript_id "RvY_11280.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 750477 750633 . + . gene_id "RvY_11280"; transcript_id "RvY_11280.1"; Scaffold006 rebuild exon 750773 750816 . + . gene_id "RvY_11280"; transcript_id "RvY_11280.1"; Scaffold006 rebuild transcript 751860 752234 . - . gene_id "RvY_11281"; transcript_id "RvY_11281.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 751860 752234 . - . gene_id "RvY_11281"; transcript_id "RvY_11281.1"; Scaffold006 rebuild transcript 752758 753147 . + . gene_id "RvY_11282"; transcript_id "RvY_11282.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 752758 753147 . + . gene_id "RvY_11282"; transcript_id "RvY_11282.1"; Scaffold006 rebuild transcript 753419 753982 . + . gene_id "RvY_11283"; transcript_id "RvY_11283.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 753419 753982 . + . gene_id "RvY_11283"; transcript_id "RvY_11283.1"; Scaffold006 rebuild transcript 754144 755193 . + . gene_id "RvY_11284"; transcript_id "RvY_11284.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 754144 755193 . + . gene_id "RvY_11284"; transcript_id "RvY_11284.1"; Scaffold006 rebuild transcript 755633 756886 . + . gene_id "RvY_11285"; transcript_id "RvY_11285.1"; gene_name "COQ3"; annotation "hexaprenyldihydroxybenzoate methyltransferase [EC:2.1.1.114]"; Pfam "[Methyltransf_26] Methyltransferase domain|[NodS] Nodulation protein S (NodS)|[CMAS] Mycolic acid cyclopropane synthetase|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase."; EC "EC2.1.1.114|EC2.1.1.64"; KO "K00591"; similar_genes "UBIG_BRUO2(e-value:9.5e-18;bit-score:88.0)"; Scaffold006 rebuild exon 755633 755749 . + . gene_id "RvY_11285"; transcript_id "RvY_11285.1"; Scaffold006 rebuild exon 756001 756196 . + . gene_id "RvY_11285"; transcript_id "RvY_11285.1"; Scaffold006 rebuild exon 756261 756886 . + . gene_id "RvY_11285"; transcript_id "RvY_11285.1"; Scaffold006 rebuild transcript 757534 759106 . + . gene_id "RvY_11286"; transcript_id "RvY_11286.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; Scaffold006 rebuild exon 757534 757809 . + . gene_id "RvY_11286"; transcript_id "RvY_11286.1"; Scaffold006 rebuild exon 758068 758203 . + . gene_id "RvY_11286"; transcript_id "RvY_11286.1"; Scaffold006 rebuild exon 758328 758471 . + . gene_id "RvY_11286"; transcript_id "RvY_11286.1"; Scaffold006 rebuild exon 758802 759106 . + . gene_id "RvY_11286"; transcript_id "RvY_11286.1"; Scaffold006 rebuild transcript 759346 760818 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; gene_name "ALKBH1"; annotation "alkylated DNA repair protein alkB homolog 1"; Pfam "[2OG-FeII_Oxy_2] 2OG-Fe(II) oxygenase superfamily"; CDD "DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999)."; KO "K10765"; Scaffold006 rebuild exon 759346 759625 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; Scaffold006 rebuild exon 759693 759886 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; Scaffold006 rebuild exon 759961 760032 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; Scaffold006 rebuild exon 760092 760285 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; Scaffold006 rebuild exon 760477 760573 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; Scaffold006 rebuild exon 760636 760818 . - . gene_id "RvY_11287"; transcript_id "RvY_11287.1"; Scaffold006 rebuild transcript 761420 769360 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; gene_name "ARID1"; annotation "AT-rich interactive domain-containing protein 1"; Pfam "[ARID] ARID/BRIGHT DNA binding domain|[DUF3518]"; KO "K11653"; similar_genes "ARI1A_MOUSE(e-value:4.1e-14;bit-score:76.0)"; Scaffold006 rebuild exon 761420 761724 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 762127 762484 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 762944 763821 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 764165 764557 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 765255 765481 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 765839 766100 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 766705 766869 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 767221 767458 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 767781 767975 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 768040 768329 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 768428 768569 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild exon 768737 769360 . - . gene_id "RvY_11288"; transcript_id "RvY_11288.1"; Scaffold006 rebuild transcript 769842 771496 . + . gene_id "RvY_11289"; transcript_id "RvY_11289.1"; annotation "hypothetical protein."; Pfam "[MIF4G]"; Scaffold006 rebuild exon 769842 769904 . + . gene_id "RvY_11289"; transcript_id "RvY_11289.1"; Scaffold006 rebuild exon 769981 770366 . + . gene_id "RvY_11289"; transcript_id "RvY_11289.1"; Scaffold006 rebuild exon 770433 770613 . + . gene_id "RvY_11289"; transcript_id "RvY_11289.1"; Scaffold006 rebuild exon 770708 771496 . + . gene_id "RvY_11289"; transcript_id "RvY_11289.1"; Scaffold006 rebuild transcript 772569 773351 . + . gene_id "RvY_11290"; transcript_id "RvY_11290.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 772569 772702 . + . gene_id "RvY_11290"; transcript_id "RvY_11290.1"; Scaffold006 rebuild exon 772855 772978 . + . gene_id "RvY_11290"; transcript_id "RvY_11290.1"; Scaffold006 rebuild exon 773163 773351 . + . gene_id "RvY_11290"; transcript_id "RvY_11290.1"; Scaffold006 rebuild transcript 773489 773818 . + . gene_id "RvY_11291"; transcript_id "RvY_11291.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 773489 773818 . + . gene_id "RvY_11291"; transcript_id "RvY_11291.1"; Scaffold006 rebuild transcript 775888 778314 . - . gene_id "RvY_11292"; transcript_id "RvY_11292.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 775888 776091 . - . gene_id "RvY_11292"; transcript_id "RvY_11292.1"; Scaffold006 rebuild exon 777859 778314 . - . gene_id "RvY_11292"; transcript_id "RvY_11292.1"; Scaffold006 rebuild transcript 775941 776255 . + . gene_id "RvY_11293"; transcript_id "RvY_11293.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 775941 776255 . + . gene_id "RvY_11293"; transcript_id "RvY_11293.1"; Scaffold006 rebuild transcript 777326 777463 . + . gene_id "RvY_11294"; transcript_id "RvY_11294.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 777326 777463 . + . gene_id "RvY_11294"; transcript_id "RvY_11294.1"; Scaffold006 rebuild transcript 782569 783886 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.1"; annotation "hypothetical protein."; Pfam "[MIF4G]"; Scaffold006 rebuild exon 782569 782655 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.1"; Scaffold006 rebuild exon 782755 783140 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.1"; Scaffold006 rebuild exon 783274 783436 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.1"; Scaffold006 rebuild exon 783557 783886 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.1"; Scaffold006 rebuild transcript 783278 784412 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.2"; annotation "hypothetical protein."; Pfam "[MIF4G]"; Scaffold006 rebuild exon 783278 783436 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.2"; Scaffold006 rebuild exon 783557 783869 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.2"; Scaffold006 rebuild exon 783943 784412 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.2"; Scaffold006 rebuild transcript 782569 783481 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.3"; annotation "hypothetical protein."; Pfam "[MIF4G]"; Scaffold006 rebuild exon 782569 782655 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.3"; Scaffold006 rebuild exon 782755 783140 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.3"; Scaffold006 rebuild exon 783274 783481 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.3"; Scaffold006 rebuild transcript 782569 783156 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.4"; annotation "hypothetical protein."; Pfam "[MIF4G]"; Scaffold006 rebuild exon 782569 782655 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.4"; Scaffold006 rebuild exon 782755 783156 . + . gene_id "RvY_11295"; transcript_id "RvY_11295.4"; Scaffold006 rebuild transcript 785525 787312 . + . gene_id "RvY_11296"; transcript_id "RvY_11296.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 785525 785587 . + . gene_id "RvY_11296"; transcript_id "RvY_11296.1"; Scaffold006 rebuild exon 785674 786113 . + . gene_id "RvY_11296"; transcript_id "RvY_11296.1"; Scaffold006 rebuild exon 786189 786363 . + . gene_id "RvY_11296"; transcript_id "RvY_11296.1"; Scaffold006 rebuild exon 786476 786767 . + . gene_id "RvY_11296"; transcript_id "RvY_11296.1"; Scaffold006 rebuild exon 786834 787312 . + . gene_id "RvY_11296"; transcript_id "RvY_11296.1"; Scaffold006 rebuild transcript 787705 788673 . - . gene_id "RvY_11297"; transcript_id "RvY_11297.1"; gene_name "COG4221"; annotation "putative Dehydrogenase/reductase SDR family member 11"; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]|[NAD_binding_10] NADH(P)-binding"; CDD "Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]"; EC "EC1.-.-.-"; similar_genes "DHR11_CHICK(e-value:2.8e-34;bit-score:143.0)"; Scaffold006 rebuild exon 787705 787920 . - . gene_id "RvY_11297"; transcript_id "RvY_11297.1"; Scaffold006 rebuild exon 787988 788212 . - . gene_id "RvY_11297"; transcript_id "RvY_11297.1"; Scaffold006 rebuild exon 788329 788673 . - . gene_id "RvY_11297"; transcript_id "RvY_11297.1"; Scaffold006 rebuild transcript 792096 792284 . - . gene_id "RvY_11298"; transcript_id "RvY_11298.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 792096 792284 . - . gene_id "RvY_11298"; transcript_id "RvY_11298.1"; Scaffold006 rebuild transcript 792180 801214 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; gene_name "PRKG"; annotation "cGMP-dependent protein kinase 1"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm."; EC "EC2.7.11.12"; KO "K07376"; similar_genes "KGP1_BOVIN(e-value:5.5e-139;bit-score:491.0)"; Scaffold006 rebuild exon 792180 792275 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 792681 793096 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 797711 797877 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 798080 798299 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 798547 798610 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 798701 798873 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 798941 799012 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 799251 799328 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 799462 799692 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 799974 800252 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 800474 800843 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild exon 801119 801214 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.1"; Scaffold006 rebuild transcript 792777 801214 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; gene_name "PRKG"; annotation "cGMP-dependent protein kinase 1"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm."; EC "EC2.7.11.12"; KO "K07376"; similar_genes "KGP1_BOVIN(e-value:5.5e-139;bit-score:491.0)"; Scaffold006 rebuild exon 792777 793096 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 797711 797877 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 798080 798299 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 798547 798610 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 798701 798873 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 798941 799012 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 799251 799328 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 799462 799692 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 799974 800252 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 800474 800843 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild exon 801119 801214 . + . gene_id "RvY_11299"; transcript_id "RvY_11299.2"; Scaffold006 rebuild transcript 795584 795847 . - . gene_id "RvY_11300"; transcript_id "RvY_11300.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 795584 795847 . - . gene_id "RvY_11300"; transcript_id "RvY_11300.1"; Scaffold006 rebuild transcript 802349 808177 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; annotation "hypothetical protein."; Pfam "[zf-H2C2_2] Zinc-finger double domain"; Scaffold006 rebuild exon 802349 802433 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 802527 802616 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 802737 802823 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 803115 803320 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 803416 803584 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 803658 803756 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 804023 804163 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 804263 804370 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 804773 805141 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 806199 806474 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 806853 807053 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild exon 807504 808177 . + . gene_id "RvY_11301"; transcript_id "RvY_11301.1"; Scaffold006 rebuild transcript 808493 808729 . + . gene_id "RvY_11302"; transcript_id "RvY_11302.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 808493 808729 . + . gene_id "RvY_11302"; transcript_id "RvY_11302.1"; Scaffold006 rebuild transcript 809016 810727 . - . gene_id "RvY_11303"; transcript_id "RvY_11303.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 809016 809222 . - . gene_id "RvY_11303"; transcript_id "RvY_11303.1"; Scaffold006 rebuild exon 810162 810241 . - . gene_id "RvY_11303"; transcript_id "RvY_11303.1"; Scaffold006 rebuild exon 810571 810727 . - . gene_id "RvY_11303"; transcript_id "RvY_11303.1"; Scaffold006 rebuild transcript 811302 814930 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; annotation "hypothetical protein."; Pfam "[RFX_DNA_binding] RFX DNA-binding domain"; Scaffold006 rebuild exon 811302 811658 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 811931 812090 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 812150 812361 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 812596 812843 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 812910 813117 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 813335 813803 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 814055 814236 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 814312 814470 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 814682 814755 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild exon 814858 814930 . - . gene_id "RvY_11304"; transcript_id "RvY_11304.1"; Scaffold006 rebuild transcript 815366 817314 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold006 rebuild exon 815366 815656 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; Scaffold006 rebuild exon 815985 816260 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; Scaffold006 rebuild exon 816343 816559 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; Scaffold006 rebuild exon 816763 816831 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; Scaffold006 rebuild exon 816918 817062 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; Scaffold006 rebuild exon 817146 817314 . + . gene_id "RvY_11305"; transcript_id "RvY_11305.1"; Scaffold006 rebuild transcript 816343 816657 . - . gene_id "RvY_11306"; transcript_id "RvY_11306.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 816343 816657 . - . gene_id "RvY_11306"; transcript_id "RvY_11306.1"; Scaffold006 rebuild transcript 821127 821833 . - . gene_id "RvY_11307"; transcript_id "RvY_11307.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 821127 821298 . - . gene_id "RvY_11307"; transcript_id "RvY_11307.1"; Scaffold006 rebuild exon 821826 821833 . - . gene_id "RvY_11307"; transcript_id "RvY_11307.1"; Scaffold006 rebuild transcript 825036 830280 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; gene_name "NDST2"; annotation "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4"; Pfam "[HSNSD] heparan sulfate-N-deacetylase|[Sulfotransfer_1] Sulfotransferase domain"; EC "EC2.8.2.-|EC2.8.2.8|EC3.1.1.-"; KO "K02577"; similar_genes "NDST4_HUMAN(e-value:1.1e-103;bit-score:374.0)"; Scaffold006 rebuild exon 825036 825759 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 826123 826602 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 826686 826801 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 827052 827470 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 827764 828063 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 828138 828321 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 828612 828782 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild exon 829951 830280 . + . gene_id "RvY_11308"; transcript_id "RvY_11308.1"; Scaffold006 rebuild transcript 833727 835543 . - . gene_id "RvY_11309"; transcript_id "RvY_11309.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 833727 834311 . - . gene_id "RvY_11309"; transcript_id "RvY_11309.1"; Scaffold006 rebuild exon 834748 835256 . - . gene_id "RvY_11309"; transcript_id "RvY_11309.1"; Scaffold006 rebuild exon 835324 835543 . - . gene_id "RvY_11309"; transcript_id "RvY_11309.1"; Scaffold006 rebuild transcript 836991 837317 . + . gene_id "RvY_11310"; transcript_id "RvY_11310.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 836991 837317 . + . gene_id "RvY_11310"; transcript_id "RvY_11310.1"; Scaffold006 rebuild transcript 837633 838994 . - . gene_id "RvY_11311"; transcript_id "RvY_11311.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 837633 838088 . - . gene_id "RvY_11311"; transcript_id "RvY_11311.1"; Scaffold006 rebuild exon 838827 838994 . - . gene_id "RvY_11311"; transcript_id "RvY_11311.1"; Scaffold006 rebuild transcript 839814 840119 . - . gene_id "RvY_11312"; transcript_id "RvY_11312.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 839814 840119 . - . gene_id "RvY_11312"; transcript_id "RvY_11312.1"; Scaffold006 rebuild transcript 839848 841311 . + . gene_id "RvY_11313"; transcript_id "RvY_11313.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 839848 840088 . + . gene_id "RvY_11313"; transcript_id "RvY_11313.1"; Scaffold006 rebuild exon 841124 841311 . + . gene_id "RvY_11313"; transcript_id "RvY_11313.1"; Scaffold006 rebuild transcript 841761 842750 . - . gene_id "RvY_11314"; transcript_id "RvY_11314.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 841761 842750 . - . gene_id "RvY_11314"; transcript_id "RvY_11314.1"; Scaffold006 rebuild transcript 844381 844821 . + . gene_id "RvY_11315"; transcript_id "RvY_11315.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 844381 844821 . + . gene_id "RvY_11315"; transcript_id "RvY_11315.1"; Scaffold006 rebuild transcript 844889 845934 . + . gene_id "RvY_11316"; transcript_id "RvY_11316.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 844889 845148 . + . gene_id "RvY_11316"; transcript_id "RvY_11316.1"; Scaffold006 rebuild exon 845364 845934 . + . gene_id "RvY_11316"; transcript_id "RvY_11316.1"; Scaffold006 rebuild transcript 846104 847576 . + . gene_id "RvY_11317"; transcript_id "RvY_11317.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 846104 846425 . + . gene_id "RvY_11317"; transcript_id "RvY_11317.1"; Scaffold006 rebuild exon 847506 847576 . + . gene_id "RvY_11317"; transcript_id "RvY_11317.1"; Scaffold006 rebuild transcript 847790 848107 . - . gene_id "RvY_11318"; transcript_id "RvY_11318.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 847790 848107 . - . gene_id "RvY_11318"; transcript_id "RvY_11318.1"; Scaffold006 rebuild transcript 848404 850054 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold006 rebuild exon 848404 849165 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.1"; Scaffold006 rebuild exon 849279 849405 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.1"; Scaffold006 rebuild exon 849697 849869 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.1"; Scaffold006 rebuild exon 849932 850054 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.1"; Scaffold006 rebuild transcript 849772 850620 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.2"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold006 rebuild exon 849772 850120 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.2"; Scaffold006 rebuild exon 850232 850351 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.2"; Scaffold006 rebuild exon 850469 850620 . - . gene_id "RvY_11319"; transcript_id "RvY_11319.2"; Scaffold006 rebuild transcript 851171 852174 . + . gene_id "RvY_11320"; transcript_id "RvY_11320.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 851171 851302 . + . gene_id "RvY_11320"; transcript_id "RvY_11320.1"; Scaffold006 rebuild exon 852013 852174 . + . gene_id "RvY_11320"; transcript_id "RvY_11320.1"; Scaffold006 rebuild transcript 851171 851431 . + . gene_id "RvY_11320"; transcript_id "RvY_11320.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 851171 851431 . + . gene_id "RvY_11320"; transcript_id "RvY_11320.2"; Scaffold006 rebuild transcript 852484 852827 . + . gene_id "RvY_11321"; transcript_id "RvY_11321.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 852484 852494 . + . gene_id "RvY_11321"; transcript_id "RvY_11321.1"; Scaffold006 rebuild exon 852578 852827 . + . gene_id "RvY_11321"; transcript_id "RvY_11321.1"; Scaffold006 rebuild transcript 853394 854058 . + . gene_id "RvY_11322"; transcript_id "RvY_11322.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 853394 853556 . + . gene_id "RvY_11322"; transcript_id "RvY_11322.1"; Scaffold006 rebuild exon 853643 854058 . + . gene_id "RvY_11322"; transcript_id "RvY_11322.1"; Scaffold006 rebuild transcript 852979 853642 . + . gene_id "RvY_11322"; transcript_id "RvY_11322.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 852979 853026 . + . gene_id "RvY_11322"; transcript_id "RvY_11322.2"; Scaffold006 rebuild exon 853385 853642 . + . gene_id "RvY_11322"; transcript_id "RvY_11322.2"; Scaffold006 rebuild transcript 854997 855687 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 854997 855126 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.1"; Scaffold006 rebuild exon 855205 855386 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.1"; Scaffold006 rebuild exon 855446 855556 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.1"; Scaffold006 rebuild exon 855631 855687 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.1"; Scaffold006 rebuild transcript 855430 855773 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 855430 855556 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.2"; Scaffold006 rebuild exon 855631 855773 . + . gene_id "RvY_11323"; transcript_id "RvY_11323.2"; Scaffold006 rebuild transcript 856729 857094 . + . gene_id "RvY_11324"; transcript_id "RvY_11324.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 856729 857094 . + . gene_id "RvY_11324"; transcript_id "RvY_11324.1"; Scaffold006 rebuild transcript 858582 860981 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; gene_name "UBE2Z"; annotation "putative Ubiquitin-conjugating enzyme E2 Z"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.19"; KO "K10585"; similar_genes "UBE2Z_RAT(e-value:3.3e-39;bit-score:159.0)"; Scaffold006 rebuild exon 858582 858731 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 858920 859126 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 859190 859295 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 859497 859571 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 859662 859803 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 859865 859949 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 860020 860219 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild exon 860543 860981 . - . gene_id "RvY_11325"; transcript_id "RvY_11325.1"; Scaffold006 rebuild transcript 860998 861566 . - . gene_id "RvY_11326"; transcript_id "RvY_11326.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 860998 861036 . - . gene_id "RvY_11326"; transcript_id "RvY_11326.1"; Scaffold006 rebuild exon 861135 861566 . - . gene_id "RvY_11326"; transcript_id "RvY_11326.1"; Scaffold006 rebuild transcript 861660 862004 . - . gene_id "RvY_11327"; transcript_id "RvY_11327.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 861660 862004 . - . gene_id "RvY_11327"; transcript_id "RvY_11327.1"; Scaffold006 rebuild transcript 862487 862798 . + . gene_id "RvY_11328"; transcript_id "RvY_11328.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 862487 862798 . + . gene_id "RvY_11328"; transcript_id "RvY_11328.1"; Scaffold006 rebuild transcript 862846 863037 . - . gene_id "RvY_11329"; transcript_id "RvY_11329.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 862846 863037 . - . gene_id "RvY_11329"; transcript_id "RvY_11329.1"; Scaffold006 rebuild transcript 863047 863321 . - . gene_id "RvY_11330"; transcript_id "RvY_11330.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 863047 863077 . - . gene_id "RvY_11330"; transcript_id "RvY_11330.1"; Scaffold006 rebuild exon 863149 863321 . - . gene_id "RvY_11330"; transcript_id "RvY_11330.1"; Scaffold006 rebuild transcript 863886 868391 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; gene_name "K06030"; annotation "putative Mitofusin-2"; Pfam "[Dynamin_N] Dynamin family|[MMR_HSR1] 50S ribosome-binding GTPase|[Fzo_mitofusin] fzo-like conserved region"; EC "EC3.6.5.-"; KO "K06030"; similar_genes "MFN2_HUMAN(e-value:1.1e-50;bit-score:197.0)"; Scaffold006 rebuild exon 863886 863970 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 864242 864376 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 864447 864643 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 864857 865096 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 865384 865616 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 865818 866025 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 866130 866256 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 866327 866516 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 866581 866734 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 867080 867418 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 867649 867811 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 867918 868044 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild exon 868115 868391 . - . gene_id "RvY_11331"; transcript_id "RvY_11331.1"; Scaffold006 rebuild transcript 870037 875836 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; gene_name "OGT"; annotation "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[Glyco_transf_41] Glycosyl transferase family 41|[MIT] MIT (microtubule interacting and transport) domain|[TPR_4] Tetratricopeptide repeat|[NARP1] NMDA receptor-regulated protein 1|[TPR_6] Tetratricopeptide repeat|[EST1_DNA_bind] Est1 DNA/RNA binding domain|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]"; EC "EC2.4.1.-"; KO "K09667"; similar_genes "OGT1_HUMAN(e-value:4.4e-266;bit-score:913.0)"; Scaffold006 rebuild exon 870037 870256 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 870327 870450 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 870794 871046 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 871303 871614 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 871671 871890 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 872159 872268 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 872327 872656 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 872878 873242 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 873555 873867 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 874106 874301 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 874371 874567 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 874755 874823 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 874921 875164 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 875496 875637 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild exon 875707 875836 . - . gene_id "RvY_11332"; transcript_id "RvY_11332.1"; Scaffold006 rebuild transcript 876559 878502 . - . gene_id "RvY_11333"; transcript_id "RvY_11333.1"; gene_name "K01930"; annotation "putative Folylpolyglutamate synthase, mitochondrial"; CDD "folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same Scaffold006 rebuild exon 876559 877617 . - . gene_id "RvY_11333"; transcript_id "RvY_11333.1"; Scaffold006 rebuild exon 877915 878220 . - . gene_id "RvY_11333"; transcript_id "RvY_11333.1"; Scaffold006 rebuild exon 878288 878419 . - . gene_id "RvY_11333"; transcript_id "RvY_11333.1"; Scaffold006 rebuild exon 878479 878502 . - . gene_id "RvY_11333"; transcript_id "RvY_11333.1"; Scaffold006 rebuild transcript 880430 880711 . - . gene_id "RvY_11334"; transcript_id "RvY_11334.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 880430 880711 . - . gene_id "RvY_11334"; transcript_id "RvY_11334.1"; Scaffold006 rebuild transcript 882247 882765 . + . gene_id "RvY_11335"; transcript_id "RvY_11335.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 882247 882280 . + . gene_id "RvY_11335"; transcript_id "RvY_11335.1"; Scaffold006 rebuild exon 882506 882765 . + . gene_id "RvY_11335"; transcript_id "RvY_11335.1"; Scaffold006 rebuild transcript 885141 888147 . + . gene_id "RvY_11336"; transcript_id "RvY_11336.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 885141 885402 . + . gene_id "RvY_11336"; transcript_id "RvY_11336.1"; Scaffold006 rebuild exon 885728 885945 . + . gene_id "RvY_11336"; transcript_id "RvY_11336.1"; Scaffold006 rebuild exon 887827 888147 . + . gene_id "RvY_11336"; transcript_id "RvY_11336.1"; Scaffold006 rebuild transcript 889719 891737 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; annotation "hypothetical protein."; Pfam "[OTU] OTU-like cysteine protease"; KO "K13717"; Scaffold006 rebuild exon 889719 889850 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild exon 890104 890441 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild exon 890604 890862 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild exon 890919 891034 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild exon 891156 891222 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild exon 891352 891439 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild exon 891505 891737 . - . gene_id "RvY_11337"; transcript_id "RvY_11337.1"; Scaffold006 rebuild transcript 892200 893979 . + . gene_id "RvY_11338"; transcript_id "RvY_11338.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 892200 892619 . + . gene_id "RvY_11338"; transcript_id "RvY_11338.1"; Scaffold006 rebuild exon 892684 892977 . + . gene_id "RvY_11338"; transcript_id "RvY_11338.1"; Scaffold006 rebuild exon 893929 893979 . + . gene_id "RvY_11338"; transcript_id "RvY_11338.1"; Scaffold006 rebuild transcript 894538 895906 . - . gene_id "RvY_11339"; transcript_id "RvY_11339.1"; gene_name "rpa1"; annotation "hypothetical protein."; Pfam "[tRNA_anti] OB-fold nucleic acid binding domain"; CDD "replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; Scaffold006 rebuild exon 894538 894735 . - . gene_id "RvY_11339"; transcript_id "RvY_11339.1"; Scaffold006 rebuild exon 894865 894986 . - . gene_id "RvY_11339"; transcript_id "RvY_11339.1"; Scaffold006 rebuild exon 895083 895296 . - . gene_id "RvY_11339"; transcript_id "RvY_11339.1"; Scaffold006 rebuild exon 895401 895563 . - . gene_id "RvY_11339"; transcript_id "RvY_11339.1"; Scaffold006 rebuild exon 895824 895906 . - . gene_id "RvY_11339"; transcript_id "RvY_11339.1"; Scaffold006 rebuild transcript 896613 901714 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; annotation "hypothetical protein."; Pfam "[Cache_1] Cache domain"; Scaffold006 rebuild exon 896613 896709 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 896896 897110 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 897208 897550 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 897842 897992 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 898120 898579 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 898940 899306 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 899672 900853 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild exon 900984 901714 . + . gene_id "RvY_11340"; transcript_id "RvY_11340.1"; Scaffold006 rebuild transcript 902096 902350 . + . gene_id "RvY_11341"; transcript_id "RvY_11341.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 902096 902350 . + . gene_id "RvY_11341"; transcript_id "RvY_11341.1"; Scaffold006 rebuild transcript 902415 905278 . - . gene_id "RvY_11342"; transcript_id "RvY_11342.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:1.3e-23;bit-score:108.0)"; Scaffold006 rebuild exon 902415 902537 . - . gene_id "RvY_11342"; transcript_id "RvY_11342.1"; Scaffold006 rebuild exon 904799 905278 . - . gene_id "RvY_11342"; transcript_id "RvY_11342.1"; Scaffold006 rebuild transcript 914321 914524 . + . gene_id "RvY_11343"; transcript_id "RvY_11343.1"; annotation "hypothetical protein."; Pfam "[HTH_38] Helix-turn-helix domain"; Scaffold006 rebuild exon 914321 914524 . + . gene_id "RvY_11343"; transcript_id "RvY_11343.1"; Scaffold006 rebuild transcript 914677 915150 . + . gene_id "RvY_11344"; transcript_id "RvY_11344.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 914677 914789 . + . gene_id "RvY_11344"; transcript_id "RvY_11344.1"; Scaffold006 rebuild exon 914850 915150 . + . gene_id "RvY_11344"; transcript_id "RvY_11344.1"; Scaffold006 rebuild transcript 919484 920586 . + . gene_id "RvY_11345"; transcript_id "RvY_11345.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 919484 919595 . + . gene_id "RvY_11345"; transcript_id "RvY_11345.1"; Scaffold006 rebuild exon 920348 920586 . + . gene_id "RvY_11345"; transcript_id "RvY_11345.1"; Scaffold006 rebuild transcript 921252 923928 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; gene_name "KLF6_7"; annotation "putative Krueppel-like factor 5"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09207"; similar_genes "KLF5_HUMAN(e-value:6.5e-38;bit-score:155.0)"; Scaffold006 rebuild exon 921252 921424 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild exon 921506 921646 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild exon 921945 922004 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild exon 922129 922467 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild exon 922883 923123 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild exon 923572 923745 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild exon 923842 923928 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.1"; Scaffold006 rebuild transcript 921252 927341 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; gene_name "KLF6_7"; annotation "putative Krueppel-like factor 5"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09207"; similar_genes "KLF5_HUMAN(e-value:6.5e-38;bit-score:155.0)"; Scaffold006 rebuild exon 921252 921424 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild exon 921506 921646 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild exon 921945 922004 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild exon 922129 922467 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild exon 922883 923123 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild exon 923572 923745 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild exon 927306 927341 . - . gene_id "RvY_11346"; transcript_id "RvY_11346.2"; Scaffold006 rebuild transcript 931132 952841 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; gene_name "Beach"; annotation "Neurobeachin"; Pfam "[DUF1088] Domain of Unknown Function (DUF1088)|[WD40] WD domain, G-beta repeat|[Beach] Beige/BEACH domain|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily"; CDD "BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins."; similar_genes "NBEA_DROME(e-value:2.5e-211;bit-score:731.0)"; Scaffold006 rebuild exon 931132 931225 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 931437 931588 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 931655 931851 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 932176 932277 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 932351 932524 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 932686 932850 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 932916 933183 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 933417 933632 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 933973 934428 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 934813 935041 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 935135 935237 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 935451 935568 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 942565 942701 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 942793 943112 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 943377 943543 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 943628 943863 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 944307 944780 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 945281 945377 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 945443 945547 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 945820 945965 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 946047 946227 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 946322 946475 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 946663 947075 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 947232 947424 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 947714 948128 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 948339 948575 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 948822 949143 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 949339 949447 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 949532 949680 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 949747 949941 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 950065 950211 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 950294 950413 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 950622 950870 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 951255 951454 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 951575 951701 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 952047 952151 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild exon 952233 952841 . - . gene_id "RvY_11347"; transcript_id "RvY_11347.1"; Scaffold006 rebuild transcript 937785 939195 . + . gene_id "RvY_11348"; transcript_id "RvY_11348.1"; gene_name "Mab-21"; annotation "Protein mab-21"; Pfam "[Mab-21] Mab-21 protein"; CDD "Mab-21 protein."; similar_genes "MAB21_AEDAE(e-value:3.6e-155;bit-score:545.0)"; Scaffold006 rebuild exon 937785 938400 . + . gene_id "RvY_11348"; transcript_id "RvY_11348.1"; Scaffold006 rebuild exon 938708 939195 . + . gene_id "RvY_11348"; transcript_id "RvY_11348.1"; Scaffold006 rebuild transcript 953389 954345 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 953389 953561 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.1"; Scaffold006 rebuild exon 953769 954345 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.1"; Scaffold006 rebuild transcript 953504 954345 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 953504 953561 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.2"; Scaffold006 rebuild exon 953768 954345 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.2"; Scaffold006 rebuild transcript 954210 954880 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 954210 954409 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.3"; Scaffold006 rebuild exon 954682 954880 . + . gene_id "RvY_11349"; transcript_id "RvY_11349.3"; Scaffold006 rebuild transcript 955706 958119 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; gene_name "PDGF"; annotation "hypothetical protein."; Pfam "[PDGF] Platelet-derived growth factor (PDGF)"; CDD "Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and somatic angiogenesis with a unique specificity for vascular endothelial cells; VEGF forms homodimers and exists in 4 different isoforms; overall, the VEGF monomer resembles that of PDGF, but its N-terminal segment is helical rather than extended; the cysteine knot motif is a common feature of this domain"; Scaffold006 rebuild exon 955706 955867 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild exon 956088 956289 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild exon 956357 956533 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild exon 956612 956665 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild exon 956902 957041 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild exon 957112 957401 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild exon 957993 958119 . + . gene_id "RvY_11350"; transcript_id "RvY_11350.1"; Scaffold006 rebuild transcript 958652 966224 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; gene_name "(1)CACNA2DN(2)CACNA2D3(3)vWA_VGCC_like"; annotation "(1)calcium channel, voltage-dependent, alpha 2/delta, invertebrate(2)calcium channel, voltage-dependent, alpha 2/delta subunit 3(3)hypothetical protein."; Pfam "[VWA_3] von Willebrand factor type A domain|[VWA_N] VWA N-terminal|[Cache_1] Cache domain|[VWA] von Willebrand factor type A domain|[VWA_2] von Willebrand factor type A domain"; CDD "VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex."; KO "(1)K05316(2)K04860"; similar_genes "CA2D3_RAT(e-value:4.7e-15;bit-score:79.0)"; Scaffold006 rebuild exon 958652 958744 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 958819 959017 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 959361 959720 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 960879 961051 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 961128 961279 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 961348 961448 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 961512 961863 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 962079 962276 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 962353 962441 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 962526 962587 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 962663 962734 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 962820 963008 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 963087 963167 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 963249 963308 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 963519 963614 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 964134 964523 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 964856 965202 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 965465 965636 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 965694 965864 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 965990 966071 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild exon 966139 966224 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.1"; Scaffold006 rebuild transcript 958652 966224 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; gene_name "(1)CACNA2DN(2)CACNA2D3(3)vWA_VGCC_like"; annotation "(1)calcium channel, voltage-dependent, alpha 2/delta, invertebrate(2)calcium channel, voltage-dependent, alpha 2/delta subunit 3(3)hypothetical protein."; Pfam "[VWA_3] von Willebrand factor type A domain|[VWA_N] VWA N-terminal|[Cache_1] Cache domain|[VWA] von Willebrand factor type A domain|[VWA_2] von Willebrand factor type A domain"; CDD "VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex."; KO "(1)K05316(2)K04860"; similar_genes "CA2D3_RAT(e-value:4.7e-15;bit-score:79.0)"; Scaffold006 rebuild exon 958652 958744 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 958819 959017 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 959361 959720 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 960879 961051 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 961128 961279 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 961348 961448 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 961512 961863 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 962079 962276 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 962353 962441 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 962526 962587 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 962663 962734 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 962820 963008 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 963087 963167 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 963249 963308 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 963970 964053 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 964134 964523 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 964856 965202 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 965465 965636 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 965694 965864 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 965990 966071 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild exon 966139 966224 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.2"; Scaffold006 rebuild transcript 962259 966224 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; gene_name "(1)CACNA2DN(2)CACNA2D3(3)vWA_VGCC_like"; annotation "(1)calcium channel, voltage-dependent, alpha 2/delta, invertebrate(2)calcium channel, voltage-dependent, alpha 2/delta subunit 3(3)hypothetical protein."; Pfam "[VWA_3] von Willebrand factor type A domain|[VWA_N] VWA N-terminal|[Cache_1] Cache domain|[VWA] von Willebrand factor type A domain|[VWA_2] von Willebrand factor type A domain"; CDD "VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex."; KO "(1)K05316(2)K04860"; similar_genes "CA2D3_RAT(e-value:4.7e-15;bit-score:79.0)"; Scaffold006 rebuild exon 962259 962276 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 962483 962587 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 962663 962734 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 962820 963008 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 963087 963167 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 963249 963308 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 963519 963614 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 964134 964523 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 964856 965202 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 965465 965636 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 965694 965864 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 965990 966071 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild exon 966139 966224 . - . gene_id "RvY_11351"; transcript_id "RvY_11351.3"; Scaffold006 rebuild transcript 967193 968778 . - . gene_id "RvY_11352"; transcript_id "RvY_11352.1"; gene_name "PB1"; annotation "hypothetical protein."; Pfam "[ZZ] Zinc finger, ZZ type|[PB1]"; CDD "The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants."; similar_genes "SQSTM_MOUSE(e-value:2.0e-09;bit-score:60.0)"; Scaffold006 rebuild exon 967193 967765 . - . gene_id "RvY_11352"; transcript_id "RvY_11352.1"; Scaffold006 rebuild exon 968082 968413 . - . gene_id "RvY_11352"; transcript_id "RvY_11352.1"; Scaffold006 rebuild exon 968634 968778 . - . gene_id "RvY_11352"; transcript_id "RvY_11352.1"; Scaffold006 rebuild transcript 969544 973351 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; annotation "hypothetical protein."; Pfam "[RUN]|[DUF4206]"; Scaffold006 rebuild exon 969544 969672 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 969941 970111 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 970171 970302 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 970467 970579 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 970664 970786 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 970880 971045 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 971271 971419 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 971479 971826 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 972147 972553 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 972740 972819 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 972874 973017 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 973080 973161 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild exon 973230 973351 . - . gene_id "RvY_11353"; transcript_id "RvY_11353.1"; Scaffold006 rebuild transcript 973450 973812 . - . gene_id "RvY_11354"; transcript_id "RvY_11354.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 973450 973812 . - . gene_id "RvY_11354"; transcript_id "RvY_11354.1"; Scaffold006 rebuild transcript 973450 973776 . - . gene_id "RvY_11354"; transcript_id "RvY_11354.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 973450 973776 . - . gene_id "RvY_11354"; transcript_id "RvY_11354.2"; Scaffold006 rebuild transcript 974129 978094 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; gene_name "U2AF_lg"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi."; KO "K14398"; similar_genes "CPSF6_MOUSE(e-value:3.7e-19;bit-score:93.0)"; Scaffold006 rebuild exon 974129 974185 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 974240 974329 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 974428 974550 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 975432 975601 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 975961 976360 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 976803 976993 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 977093 977244 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 977323 977464 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 977800 977895 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild exon 977965 978094 . + . gene_id "RvY_11355"; transcript_id "RvY_11355.1"; Scaffold006 rebuild transcript 977949 980063 . - . gene_id "RvY_11356"; transcript_id "RvY_11356.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 977949 978090 . - . gene_id "RvY_11356"; transcript_id "RvY_11356.1"; Scaffold006 rebuild exon 980008 980063 . - . gene_id "RvY_11356"; transcript_id "RvY_11356.1"; Scaffold006 rebuild transcript 979889 983337 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; annotation "putative Solute carrier family 2, facilitated glucose transporter member 5"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; similar_genes "GTR5_MOUSE(e-value:3.1e-29;bit-score:126.0)"; Scaffold006 rebuild exon 979889 979894 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 980032 980133 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 980473 980759 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 981086 981489 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 981789 981976 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 982052 982264 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 982598 982715 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 982802 982929 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild exon 983200 983337 . + . gene_id "RvY_11357"; transcript_id "RvY_11357.1"; Scaffold006 rebuild transcript 983878 988116 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; gene_name "guaA"; annotation "putative GMP synthase [glutamine-hydrolyzing]"; Pfam "[Peptidase_C26] Peptidase C26|[GATase] Glutamine amidotransferase class-I|[NAD_synthase] NAD synthase|[GMP_synt_C] GMP synthase C terminal domain"; CDD "GMP synthase; Reviewed"; EC "EC6.3.5.2"; KO "K01951"; similar_genes "GUAA_HUMAN(e-value:4.9e-36;bit-score:149.0)"; Scaffold006 rebuild exon 983878 983979 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 984452 984643 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 984714 984953 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 985267 985392 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 985495 985716 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 985799 985911 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 986120 986335 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 986416 986581 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 986847 987040 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 987107 987213 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 987285 987497 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 987556 987647 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild exon 987901 988116 . - . gene_id "RvY_11358"; transcript_id "RvY_11358.1"; Scaffold006 rebuild transcript 989015 991421 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; gene_name "PINK1"; annotation "PTEN induced putative kinase 1 [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; EC "EC2.7.11.1"; KO "K05688"; Scaffold006 rebuild exon 989015 989380 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild exon 989616 989778 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild exon 989851 990109 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild exon 990172 990338 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild exon 990398 990516 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild exon 990790 991020 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild exon 991182 991421 . + . gene_id "RvY_11359"; transcript_id "RvY_11359.1"; Scaffold006 rebuild transcript 992098 993244 . - . gene_id "RvY_11360"; transcript_id "RvY_11360.1"; annotation "hypothetical protein."; Pfam "[DUF1264]"; Scaffold006 rebuild exon 992098 992324 . - . gene_id "RvY_11360"; transcript_id "RvY_11360.1"; Scaffold006 rebuild exon 992393 992515 . - . gene_id "RvY_11360"; transcript_id "RvY_11360.1"; Scaffold006 rebuild exon 992670 992964 . - . gene_id "RvY_11360"; transcript_id "RvY_11360.1"; Scaffold006 rebuild exon 993179 993244 . - . gene_id "RvY_11360"; transcript_id "RvY_11360.1"; Scaffold006 rebuild transcript 993786 997472 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; gene_name "XYLT"; annotation "protein xylosyltransferase [EC:2.4.2.26]"; Pfam "[Xylo_C] Xylosyltransferase C terminal|[Branch] Core-2/I-Branching enzyme"; EC "EC2.4.2.26"; KO "K00771"; similar_genes "XYLT_DROPS(e-value:5.1e-25;bit-score:112.0)"; Scaffold006 rebuild exon 993786 993902 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 993976 994171 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 994315 994466 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 994533 994732 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 994805 994885 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 995147 995369 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 995435 995611 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 995949 996602 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild exon 997035 997472 . + . gene_id "RvY_11361"; transcript_id "RvY_11361.1"; Scaffold006 rebuild transcript 997784 999499 . - . gene_id "RvY_11362"; transcript_id "RvY_11362.1"; gene_name "UbiG"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Ubie_methyltran] ubiE/COQ5 methyltransferase family|[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase."; Scaffold006 rebuild exon 997784 998076 . - . gene_id "RvY_11362"; transcript_id "RvY_11362.1"; Scaffold006 rebuild exon 998355 999033 . - . gene_id "RvY_11362"; transcript_id "RvY_11362.1"; Scaffold006 rebuild exon 999497 999499 . - . gene_id "RvY_11362"; transcript_id "RvY_11362.1"; Scaffold006 rebuild transcript 1000272 1001843 . - . gene_id "RvY_11363"; transcript_id "RvY_11363.1"; gene_name "COQ3"; annotation "hexaprenyldihydroxybenzoate methyltransferase [EC:2.1.1.114]"; Pfam "[NodS] Nodulation protein S (NodS)|[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase."; EC "EC2.1.1.114|EC2.1.1.64"; KO "K00591"; similar_genes "UBIG_AZOSE(e-value:4.4e-07;bit-score:53.0)"; Scaffold006 rebuild exon 1000272 1000448 . - . gene_id "RvY_11363"; transcript_id "RvY_11363.1"; Scaffold006 rebuild exon 1000530 1000811 . - . gene_id "RvY_11363"; transcript_id "RvY_11363.1"; Scaffold006 rebuild exon 1001094 1001155 . - . gene_id "RvY_11363"; transcript_id "RvY_11363.1"; Scaffold006 rebuild exon 1001247 1001691 . - . gene_id "RvY_11363"; transcript_id "RvY_11363.1"; Scaffold006 rebuild exon 1001790 1001843 . - . gene_id "RvY_11363"; transcript_id "RvY_11363.1"; Scaffold006 rebuild transcript 1003115 1004385 . + . gene_id "RvY_11364"; transcript_id "RvY_11364.1"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; Scaffold006 rebuild exon 1003115 1003328 . + . gene_id "RvY_11364"; transcript_id "RvY_11364.1"; Scaffold006 rebuild exon 1003672 1004022 . + . gene_id "RvY_11364"; transcript_id "RvY_11364.1"; Scaffold006 rebuild exon 1004312 1004385 . + . gene_id "RvY_11364"; transcript_id "RvY_11364.1"; Scaffold006 rebuild transcript 1004880 1005092 . + . gene_id "RvY_11365"; transcript_id "RvY_11365.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1004880 1005092 . + . gene_id "RvY_11365"; transcript_id "RvY_11365.1"; Scaffold006 rebuild transcript 1005188 1009795 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; gene_name "GPATCH1"; annotation "G patch domain-containing protein 1"; Pfam "[G-patch]|[DUF1604]"; KO "K13123"; similar_genes "GPTC1_BOVIN(e-value:4.3e-20;bit-score:96.0)"; Scaffold006 rebuild exon 1005188 1005493 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1005612 1006004 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1006269 1006569 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1006856 1006983 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1007053 1007240 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1007585 1008533 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1008896 1009037 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1009101 1009243 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1009341 1009426 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1009484 1009618 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild exon 1009720 1009795 . - . gene_id "RvY_11366"; transcript_id "RvY_11366.1"; Scaffold006 rebuild transcript 1012428 1014427 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 1012428 1012825 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; Scaffold006 rebuild exon 1012896 1013097 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; Scaffold006 rebuild exon 1013198 1013347 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; Scaffold006 rebuild exon 1013467 1013764 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; Scaffold006 rebuild exon 1013870 1014269 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; Scaffold006 rebuild exon 1014349 1014427 . - . gene_id "RvY_11367"; transcript_id "RvY_11367.1"; Scaffold006 rebuild transcript 1014651 1015163 . - . gene_id "RvY_11368"; transcript_id "RvY_11368.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1014651 1015163 . - . gene_id "RvY_11368"; transcript_id "RvY_11368.1"; Scaffold006 rebuild transcript 1015826 1017152 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.1"; gene_name "(1)COQ3(2)PRK05134"; annotation "(1)hexaprenyldihydroxybenzoate methyltransferase [EC:2.1.1.114](2)hypothetical protein."; Pfam "(1)[NodS] Nodulation protein S (NodS)|(1)[Methyltransf_26] Methyltransferase domain|(1)[Methyltransf_18] Methyltransferase domain|(1)[Methyltransf_31] Methyltransferase domain|(1)[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|(1)[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|(1)[Methyltransf_11] Methyltransferase domain|(1)[Methyltransf_25] Methyltransferase domain"; CDD "(1)ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.(2)3-demethylubiquinone-9 3-methyltransferase; Provisional"; EC "(1)EC2.1.1.114|EC2.1.1.64(2)EC2.1.1.114"; KO "(1)K00591"; similar_genes "(1)UBIG_AZOSE(e-value:5.1e-08;bit-score:56.0)(2)COQ3_MOUSE(e-value:8.7e-06;bit-score:48.0)"; Scaffold006 rebuild exon 1015826 1015897 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.1"; Scaffold006 rebuild exon 1015982 1016405 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.1"; Scaffold006 rebuild exon 1016459 1016520 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.1"; Scaffold006 rebuild exon 1016703 1017152 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.1"; Scaffold006 rebuild transcript 1015826 1016449 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.2"; gene_name "(1)COQ3(2)PRK05134"; annotation "(1)hexaprenyldihydroxybenzoate methyltransferase [EC:2.1.1.114](2)hypothetical protein."; Pfam "(1)[NodS] Nodulation protein S (NodS)|(1)[Methyltransf_26] Methyltransferase domain|(1)[Methyltransf_18] Methyltransferase domain|(1)[Methyltransf_31] Methyltransferase domain|(1)[PrmA] Ribosomal protein L11 methyltransferase (PrmA)|(1)[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|(1)[Methyltransf_11] Methyltransferase domain|(1)[Methyltransf_25] Methyltransferase domain"; CDD "(1)ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.(2)3-demethylubiquinone-9 3-methyltransferase; Provisional"; EC "(1)EC2.1.1.114|EC2.1.1.64(2)EC2.1.1.114"; KO "(1)K00591"; similar_genes "(1)UBIG_AZOSE(e-value:5.1e-08;bit-score:56.0)(2)COQ3_MOUSE(e-value:8.7e-06;bit-score:48.0)"; Scaffold006 rebuild exon 1015826 1015897 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.2"; Scaffold006 rebuild exon 1015982 1016449 . + . gene_id "RvY_11369"; transcript_id "RvY_11369.2"; Scaffold006 rebuild transcript 1017848 1021865 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; gene_name "mut-7_like_exo"; annotation "hypothetical protein."; Pfam "[DNA_pol_A_exo1] 3'-5' exonuclease"; CDD "The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the Scaffold006 rebuild exon 1017848 1018933 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; Scaffold006 rebuild exon 1019237 1019701 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; Scaffold006 rebuild exon 1019959 1020363 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; Scaffold006 rebuild exon 1020579 1021011 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; Scaffold006 rebuild exon 1021072 1021362 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; Scaffold006 rebuild exon 1021609 1021865 . + . gene_id "RvY_11370"; transcript_id "RvY_11370.1"; Scaffold006 rebuild transcript 1023409 1028066 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; gene_name "2A0303"; annotation "putative Cationic amino acid transporter 4"; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease|[AA_permease_C] C-terminus of AA_permease"; CDD "cationic amino acid transport permease."; KO "K13866"; similar_genes "CTR4_MOUSE(e-value:4.9e-36;bit-score:149.0)"; Scaffold006 rebuild exon 1023409 1023580 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1024123 1024265 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1024378 1024441 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1024747 1024941 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1025067 1025123 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1025218 1025297 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1025674 1025740 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1025819 1025911 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1026050 1026183 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1026719 1027104 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1027367 1027604 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1027664 1027772 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild exon 1027843 1028066 . + . gene_id "RvY_11371"; transcript_id "RvY_11371.1"; Scaffold006 rebuild transcript 1032352 1034804 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; gene_name "AP2M1"; annotation "AP-2 complex subunit mu-1"; Pfam "[Adap_comp_sub] Adaptor complexes medium subunit family|[Clat_adaptor_s] Clathrin adaptor complex small chain"; KO "K11826"; similar_genes "AP2M1_CHICK(e-value:2.2e-108;bit-score:389.0)"; Scaffold006 rebuild exon 1032352 1032425 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1032536 1032801 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1032923 1033005 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1033217 1033352 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1033442 1033583 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1033905 1034021 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1034138 1034273 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1034375 1034584 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild exon 1034670 1034804 . + . gene_id "RvY_11372"; transcript_id "RvY_11372.1"; Scaffold006 rebuild transcript 1037071 1037487 . - . gene_id "RvY_11373"; transcript_id "RvY_11373.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1037071 1037487 . - . gene_id "RvY_11373"; transcript_id "RvY_11373.1"; Scaffold006 rebuild transcript 1037706 1038005 . - . gene_id "RvY_11374"; transcript_id "RvY_11374.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1037706 1038005 . - . gene_id "RvY_11374"; transcript_id "RvY_11374.1"; Scaffold006 rebuild transcript 1038871 1040150 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1038871 1039254 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.1"; Scaffold006 rebuild exon 1039387 1039483 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.1"; Scaffold006 rebuild exon 1039684 1040150 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.1"; Scaffold006 rebuild transcript 1038871 1040180 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1038871 1039254 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.2"; Scaffold006 rebuild exon 1039387 1039483 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.2"; Scaffold006 rebuild exon 1039684 1040099 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.2"; Scaffold006 rebuild exon 1040166 1040180 . + . gene_id "RvY_11375"; transcript_id "RvY_11375.2"; Scaffold006 rebuild transcript 1045048 1045233 . - . gene_id "RvY_11376"; transcript_id "RvY_11376.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1045048 1045233 . - . gene_id "RvY_11376"; transcript_id "RvY_11376.1"; Scaffold006 rebuild transcript 1048566 1051432 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; annotation "hypothetical protein."; Pfam "[zf-TAZ] TAZ zinc finger"; Scaffold006 rebuild exon 1048566 1048693 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; Scaffold006 rebuild exon 1048768 1049467 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; Scaffold006 rebuild exon 1050163 1050286 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; Scaffold006 rebuild exon 1050364 1050676 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; Scaffold006 rebuild exon 1050976 1051101 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; Scaffold006 rebuild exon 1051162 1051432 . - . gene_id "RvY_11377"; transcript_id "RvY_11377.1"; Scaffold006 rebuild transcript 1053186 1060518 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; gene_name "eIF-4F"; annotation "translation initiation factor eIF-4F"; Pfam "[MA3]|[MIF4G]"; CDD "Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) ""Novel eIF4G domain homologues (in press)"; KO "K03260"; Scaffold006 rebuild exon 1053186 1053447 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1053508 1053692 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1053947 1054256 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1054562 1054683 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1054754 1055230 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1055421 1055598 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1055951 1056372 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1056451 1056690 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1057026 1057454 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1057743 1057927 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1058130 1058249 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1058334 1058553 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1058879 1059294 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1059506 1059602 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1059735 1060136 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild exon 1060498 1060518 . - . gene_id "RvY_11378"; transcript_id "RvY_11378.1"; Scaffold006 rebuild transcript 1061758 1065795 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; gene_name "SEC23"; annotation "Protein transport protein Sec23A"; Pfam "[Sec23_BS] Sec23/Sec24 beta-sandwich domain|[zf-Sec23_Sec24] Sec23/Sec24 zinc finger|[Sec23_helical] Sec23/Sec24 helical domain|[Sec23_trunk] Sec23/Sec24 trunk domain|[Gelsolin] Gelsolin repeat"; CDD "Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]"; KO "K14006"; similar_genes "SC23A_DANRE(e-value:2.8e-85;bit-score:312.0)"; Scaffold006 rebuild exon 1061758 1061847 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1061921 1062154 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1062244 1062330 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1062399 1062638 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1062709 1062856 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1063096 1063202 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1063265 1063438 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1063591 1063714 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1063787 1063902 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1063966 1064269 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1064487 1064602 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1064686 1064922 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1064987 1065073 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1065265 1065322 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild exon 1065383 1065795 . - . gene_id "RvY_11379"; transcript_id "RvY_11379.1"; Scaffold006 rebuild transcript 1068722 1068994 . + . gene_id "RvY_11380"; transcript_id "RvY_11380.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1068722 1068994 . + . gene_id "RvY_11380"; transcript_id "RvY_11380.1"; Scaffold006 rebuild transcript 1070605 1071516 . + . gene_id "RvY_11381"; transcript_id "RvY_11381.1"; gene_name "POLE3"; annotation "DNA polymerase epsilon subunit 3 [EC:2.7.7.7]"; Pfam "[CBFD_NFYB_HMF] Histone-like transcription factor (CBF/NF-Y) and archaeal histone"; CDD "Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]"; EC "EC2.7.7.7"; KO "K02326"; Scaffold006 rebuild exon 1070605 1070775 . + . gene_id "RvY_11381"; transcript_id "RvY_11381.1"; Scaffold006 rebuild exon 1070847 1070932 . + . gene_id "RvY_11381"; transcript_id "RvY_11381.1"; Scaffold006 rebuild exon 1071012 1071130 . + . gene_id "RvY_11381"; transcript_id "RvY_11381.1"; Scaffold006 rebuild exon 1071212 1071516 . + . gene_id "RvY_11381"; transcript_id "RvY_11381.1"; Scaffold006 rebuild transcript 1071940 1075203 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1071940 1072206 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild exon 1072272 1072323 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild exon 1072630 1072805 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild exon 1072884 1073065 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild exon 1073315 1073975 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild exon 1074259 1074660 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild exon 1074922 1075203 . + . gene_id "RvY_11382"; transcript_id "RvY_11382.1"; Scaffold006 rebuild transcript 1076106 1078931 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; annotation "putative Coatomer subunit delta"; Pfam "[Adap_comp_sub] Adaptor complexes medium subunit family|[Clat_adaptor_s] Clathrin adaptor complex small chain"; similar_genes "COPD_HUMAN(e-value:4.4e-41;bit-score:166.0)"; Scaffold006 rebuild exon 1076106 1076108 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1076197 1076236 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1076354 1076577 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1076643 1076822 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1076981 1077177 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1077246 1077334 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1077397 1077481 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1077554 1077719 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1078048 1078304 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1078364 1078568 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild exon 1078842 1078931 . + . gene_id "RvY_11383"; transcript_id "RvY_11383.1"; Scaffold006 rebuild transcript 1079377 1080537 . + . gene_id "RvY_11384"; transcript_id "RvY_11384.1"; gene_name "K03791"; annotation "putative chitinase"; Pfam "[Glyco_hydro_19] Chitinase class I|[LysM]"; CDD "Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence."; KO "K03791"; similar_genes "HXB3_MOUSE(e-value:1.7e-06;bit-score:51.0)"; Scaffold006 rebuild exon 1079377 1079711 . + . gene_id "RvY_11384"; transcript_id "RvY_11384.1"; Scaffold006 rebuild exon 1079973 1080537 . + . gene_id "RvY_11384"; transcript_id "RvY_11384.1"; Scaffold006 rebuild transcript 1084298 1084495 . - . gene_id "RvY_11385"; transcript_id "RvY_11385.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1084298 1084495 . - . gene_id "RvY_11385"; transcript_id "RvY_11385.1"; Scaffold006 rebuild transcript 1090733 1091329 . - . gene_id "RvY_11386"; transcript_id "RvY_11386.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1090733 1091329 . - . gene_id "RvY_11386"; transcript_id "RvY_11386.1"; Scaffold006 rebuild transcript 1091299 1091676 . - . gene_id "RvY_11386"; transcript_id "RvY_11386.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1091299 1091676 . - . gene_id "RvY_11386"; transcript_id "RvY_11386.2"; Scaffold006 rebuild transcript 1090627 1090929 . - . gene_id "RvY_11386"; transcript_id "RvY_11386.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1090627 1090929 . - . gene_id "RvY_11386"; transcript_id "RvY_11386.3"; Scaffold006 rebuild transcript 1092133 1092807 . - . gene_id "RvY_11387"; transcript_id "RvY_11387.1"; gene_name "(1)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 1092133 1092807 . - . gene_id "RvY_11387"; transcript_id "RvY_11387.1"; Scaffold006 rebuild transcript 1091805 1092371 . - . gene_id "RvY_11387"; transcript_id "RvY_11387.2"; gene_name "(1)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 1091805 1092371 . - . gene_id "RvY_11387"; transcript_id "RvY_11387.2"; Scaffold006 rebuild transcript 1095096 1095914 . + . gene_id "RvY_11388"; transcript_id "RvY_11388.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1095096 1095671 . + . gene_id "RvY_11388"; transcript_id "RvY_11388.1"; Scaffold006 rebuild exon 1095777 1095914 . + . gene_id "RvY_11388"; transcript_id "RvY_11388.1"; Scaffold006 rebuild transcript 1095117 1095914 . + . gene_id "RvY_11388"; transcript_id "RvY_11388.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1095117 1095671 . + . gene_id "RvY_11388"; transcript_id "RvY_11388.2"; Scaffold006 rebuild exon 1095777 1095914 . + . gene_id "RvY_11388"; transcript_id "RvY_11388.2"; Scaffold006 rebuild transcript 1096026 1096607 . + . gene_id "RvY_11389"; transcript_id "RvY_11389.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1096026 1096179 . + . gene_id "RvY_11389"; transcript_id "RvY_11389.1"; Scaffold006 rebuild exon 1096372 1096607 . + . gene_id "RvY_11389"; transcript_id "RvY_11389.1"; Scaffold006 rebuild transcript 1096614 1096914 . + . gene_id "RvY_11390"; transcript_id "RvY_11390.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1096614 1096757 . + . gene_id "RvY_11390"; transcript_id "RvY_11390.1"; Scaffold006 rebuild exon 1096846 1096914 . + . gene_id "RvY_11390"; transcript_id "RvY_11390.1"; Scaffold006 rebuild transcript 1097021 1097461 . + . gene_id "RvY_11391"; transcript_id "RvY_11391.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1097021 1097061 . + . gene_id "RvY_11391"; transcript_id "RvY_11391.1"; Scaffold006 rebuild exon 1097146 1097461 . + . gene_id "RvY_11391"; transcript_id "RvY_11391.1"; Scaffold006 rebuild transcript 1110266 1110484 . + . gene_id "RvY_11392"; transcript_id "RvY_11392.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1110266 1110484 . + . gene_id "RvY_11392"; transcript_id "RvY_11392.1"; Scaffold006 rebuild transcript 1110498 1110656 . - . gene_id "RvY_11393"; transcript_id "RvY_11393.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1110498 1110656 . - . gene_id "RvY_11393"; transcript_id "RvY_11393.1"; Scaffold006 rebuild transcript 1115053 1115775 . + . gene_id "RvY_11394"; transcript_id "RvY_11394.1"; gene_name "NEUROG1"; annotation "neurogenin 1"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09081"; similar_genes "TAP_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold006 rebuild exon 1115053 1115775 . + . gene_id "RvY_11394"; transcript_id "RvY_11394.1"; Scaffold006 rebuild transcript 1119900 1120079 . - . gene_id "RvY_11395"; transcript_id "RvY_11395.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1119900 1120079 . - . gene_id "RvY_11395"; transcript_id "RvY_11395.1"; Scaffold006 rebuild transcript 1125175 1125891 . - . gene_id "RvY_11396"; transcript_id "RvY_11396.1"; gene_name "NEUROG1"; annotation "neurogenin 1"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09081"; similar_genes "TAP_DROME(e-value:1.5e-09;bit-score:61.0)"; Scaffold006 rebuild exon 1125175 1125891 . - . gene_id "RvY_11396"; transcript_id "RvY_11396.1"; Scaffold006 rebuild transcript 1128919 1130870 . - . gene_id "RvY_11397"; transcript_id "RvY_11397.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1128919 1129022 . - . gene_id "RvY_11397"; transcript_id "RvY_11397.1"; Scaffold006 rebuild exon 1129128 1129395 . - . gene_id "RvY_11397"; transcript_id "RvY_11397.1"; Scaffold006 rebuild exon 1129518 1129990 . - . gene_id "RvY_11397"; transcript_id "RvY_11397.1"; Scaffold006 rebuild exon 1130264 1130870 . - . gene_id "RvY_11397"; transcript_id "RvY_11397.1"; Scaffold006 rebuild transcript 1131934 1134789 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; gene_name "MYB"; annotation "myb proto-oncogene protein"; Pfam "[Myb_DNA-binding] Myb-like DNA-binding domain|[Myb_DNA-bind_6] Myb-like DNA-binding domain"; CDD "Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]"; KO "K09420"; similar_genes "MYB98_ARATH(e-value:2.3e-10;bit-score:63.0)"; Scaffold006 rebuild exon 1131934 1132080 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild exon 1132346 1132465 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild exon 1132524 1132922 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild exon 1133110 1133577 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild exon 1133841 1134011 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild exon 1134082 1134337 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild exon 1134482 1134789 . - . gene_id "RvY_11398"; transcript_id "RvY_11398.1"; Scaffold006 rebuild transcript 1137120 1140484 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; gene_name "SLC9A6"; annotation "Sodium/hydrogen exchanger 7"; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "sodium/hydrogen exchanger 3. This Hmm is specific for the eukaryotic members members of this family."; KO "K12041"; similar_genes "SL9A7_MOUSE(e-value:1.1e-69;bit-score:261.0)"; Scaffold006 rebuild exon 1137120 1137181 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild exon 1137257 1137409 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild exon 1137699 1138252 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild exon 1138502 1138860 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild exon 1139139 1139508 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild exon 1139575 1139848 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild exon 1140145 1140484 . + . gene_id "RvY_11399"; transcript_id "RvY_11399.1"; Scaffold006 rebuild transcript 1141535 1142799 . - . gene_id "RvY_11400"; transcript_id "RvY_11400.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 1141535 1141851 . - . gene_id "RvY_11400"; transcript_id "RvY_11400.1"; Scaffold006 rebuild exon 1141890 1142148 . - . gene_id "RvY_11400"; transcript_id "RvY_11400.1"; Scaffold006 rebuild exon 1142363 1142566 . - . gene_id "RvY_11400"; transcript_id "RvY_11400.1"; Scaffold006 rebuild exon 1142632 1142799 . - . gene_id "RvY_11400"; transcript_id "RvY_11400.1"; Scaffold006 rebuild transcript 1142899 1143580 . - . gene_id "RvY_11401"; transcript_id "RvY_11401.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold006 rebuild exon 1142899 1143146 . - . gene_id "RvY_11401"; transcript_id "RvY_11401.1"; Scaffold006 rebuild exon 1143283 1143580 . - . gene_id "RvY_11401"; transcript_id "RvY_11401.1"; Scaffold006 rebuild transcript 1144185 1144514 . - . gene_id "RvY_11402"; transcript_id "RvY_11402.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1144185 1144514 . - . gene_id "RvY_11402"; transcript_id "RvY_11402.1"; Scaffold006 rebuild transcript 1145945 1146160 . - . gene_id "RvY_11403"; transcript_id "RvY_11403.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1145945 1146160 . - . gene_id "RvY_11403"; transcript_id "RvY_11403.1"; Scaffold006 rebuild transcript 1146500 1147494 . - . gene_id "RvY_11404"; transcript_id "RvY_11404.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1146500 1146684 . - . gene_id "RvY_11404"; transcript_id "RvY_11404.1"; Scaffold006 rebuild exon 1146754 1146999 . - . gene_id "RvY_11404"; transcript_id "RvY_11404.1"; Scaffold006 rebuild exon 1147410 1147494 . - . gene_id "RvY_11404"; transcript_id "RvY_11404.1"; Scaffold006 rebuild transcript 1148153 1148407 . - . gene_id "RvY_11405"; transcript_id "RvY_11405.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1148153 1148407 . - . gene_id "RvY_11405"; transcript_id "RvY_11405.1"; Scaffold006 rebuild transcript 1151607 1151912 . - . gene_id "RvY_11406"; transcript_id "RvY_11406.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1151607 1151912 . - . gene_id "RvY_11406"; transcript_id "RvY_11406.1"; Scaffold006 rebuild transcript 1151940 1153039 . - . gene_id "RvY_11407"; transcript_id "RvY_11407.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1151940 1152099 . - . gene_id "RvY_11407"; transcript_id "RvY_11407.1"; Scaffold006 rebuild exon 1152954 1153039 . - . gene_id "RvY_11407"; transcript_id "RvY_11407.1"; Scaffold006 rebuild transcript 1153083 1153616 . + . gene_id "RvY_11408"; transcript_id "RvY_11408.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1153083 1153616 . + . gene_id "RvY_11408"; transcript_id "RvY_11408.1"; Scaffold006 rebuild transcript 1153619 1153792 . - . gene_id "RvY_11409"; transcript_id "RvY_11409.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1153619 1153792 . - . gene_id "RvY_11409"; transcript_id "RvY_11409.1"; Scaffold006 rebuild transcript 1154922 1155646 . - . gene_id "RvY_11410"; transcript_id "RvY_11410.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 1154922 1155319 . - . gene_id "RvY_11410"; transcript_id "RvY_11410.1"; Scaffold006 rebuild exon 1155358 1155646 . - . gene_id "RvY_11410"; transcript_id "RvY_11410.1"; Scaffold006 rebuild transcript 1156376 1157083 . - . gene_id "RvY_11411"; transcript_id "RvY_11411.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold006 rebuild exon 1156376 1157083 . - . gene_id "RvY_11411"; transcript_id "RvY_11411.1"; Scaffold006 rebuild transcript 1157670 1157885 . + . gene_id "RvY_11412"; transcript_id "RvY_11412.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1157670 1157885 . + . gene_id "RvY_11412"; transcript_id "RvY_11412.1"; Scaffold006 rebuild transcript 1157357 1158194 . + . gene_id "RvY_11412"; transcript_id "RvY_11412.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1157357 1157502 . + . gene_id "RvY_11412"; transcript_id "RvY_11412.2"; Scaffold006 rebuild exon 1158152 1158194 . + . gene_id "RvY_11412"; transcript_id "RvY_11412.2"; Scaffold006 rebuild transcript 1158254 1158769 . - . gene_id "RvY_11413"; transcript_id "RvY_11413.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1158254 1158769 . - . gene_id "RvY_11413"; transcript_id "RvY_11413.1"; Scaffold006 rebuild transcript 1159587 1159967 . + . gene_id "RvY_11414"; transcript_id "RvY_11414.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1159587 1159967 . + . gene_id "RvY_11414"; transcript_id "RvY_11414.1"; Scaffold006 rebuild transcript 1160012 1162439 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; gene_name "MEP1B"; annotation "meprin A, beta [EC:3.4.24.18]"; Pfam "[PAN_4] PAN domain|[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.18"; KO "K08606"; similar_genes "MEP1A_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold006 rebuild exon 1160012 1160985 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild exon 1161057 1161225 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild exon 1161295 1161368 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild exon 1161585 1161772 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild exon 1161870 1161996 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild exon 1162114 1162198 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild exon 1162278 1162439 . - . gene_id "RvY_11415"; transcript_id "RvY_11415.1"; Scaffold006 rebuild transcript 1165326 1167393 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; gene_name "MEP1B"; annotation "meprin A, beta [EC:3.4.24.18]"; Pfam "[PAN_4] PAN domain|[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.18|EC3.4.24.21"; KO "K08606"; similar_genes "NAS30_CAEEL(e-value:4.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 1165326 1166143 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild exon 1166205 1166391 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild exon 1166482 1166555 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild exon 1166617 1166798 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild exon 1166889 1167015 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild exon 1167082 1167166 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild exon 1167232 1167393 . - . gene_id "RvY_11416"; transcript_id "RvY_11416.1"; Scaffold006 rebuild transcript 1171672 1173456 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; gene_name "MEP1B"; annotation "meprin A, beta [EC:3.4.24.18]"; Pfam "[PAN_4] PAN domain|[LysM]|[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.24.18"; KO "K08606"; similar_genes "MEP1A_MOUSE(e-value:3.5e-11;bit-score:66.0)"; Scaffold006 rebuild exon 1171672 1172090 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild exon 1172162 1172342 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild exon 1172420 1172493 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild exon 1172671 1172852 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild exon 1172929 1173055 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild exon 1173117 1173201 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild exon 1173292 1173456 . - . gene_id "RvY_11417"; transcript_id "RvY_11417.1"; Scaffold006 rebuild transcript 1173817 1175585 . - . gene_id "RvY_11418"; transcript_id "RvY_11418.1"; annotation "hypothetical protein."; similar_genes "RT31_BOVIN(e-value:3.2e-16;bit-score:83.0)"; Scaffold006 rebuild exon 1173817 1174145 . - . gene_id "RvY_11418"; transcript_id "RvY_11418.1"; Scaffold006 rebuild exon 1174206 1174429 . - . gene_id "RvY_11418"; transcript_id "RvY_11418.1"; Scaffold006 rebuild exon 1174502 1174702 . - . gene_id "RvY_11418"; transcript_id "RvY_11418.1"; Scaffold006 rebuild exon 1174765 1174917 . - . gene_id "RvY_11418"; transcript_id "RvY_11418.1"; Scaffold006 rebuild exon 1175170 1175585 . - . gene_id "RvY_11418"; transcript_id "RvY_11418.1"; Scaffold006 rebuild transcript 1178863 1181209 . - . gene_id "RvY_11419"; transcript_id "RvY_11419.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 1178863 1179653 . - . gene_id "RvY_11419"; transcript_id "RvY_11419.1"; Scaffold006 rebuild exon 1179700 1180325 . - . gene_id "RvY_11419"; transcript_id "RvY_11419.1"; Scaffold006 rebuild exon 1180353 1181209 . - . gene_id "RvY_11419"; transcript_id "RvY_11419.1"; Scaffold006 rebuild transcript 1181219 1181494 . - . gene_id "RvY_11420"; transcript_id "RvY_11420.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1181219 1181494 . - . gene_id "RvY_11420"; transcript_id "RvY_11420.1"; Scaffold006 rebuild transcript 1183357 1183876 . - . gene_id "RvY_11421"; transcript_id "RvY_11421.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1183357 1183500 . - . gene_id "RvY_11421"; transcript_id "RvY_11421.1"; Scaffold006 rebuild exon 1183574 1183876 . - . gene_id "RvY_11421"; transcript_id "RvY_11421.1"; Scaffold006 rebuild transcript 1184043 1185429 . - . gene_id "RvY_11422"; transcript_id "RvY_11422.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1184043 1184126 . - . gene_id "RvY_11422"; transcript_id "RvY_11422.1"; Scaffold006 rebuild exon 1184563 1185429 . - . gene_id "RvY_11422"; transcript_id "RvY_11422.1"; Scaffold006 rebuild transcript 1186314 1189561 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; product "Ultraspiracle RXR"; gene_name "NR2B1"; annotation "Ultraspiracle RXR | putative Protein ultraspiracle homolog"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily. The ligand binding domain of the retinoid X receptor (RXR) and Ultraspiracle (USP): This family includes two evolutionary related nuclear receptors: retinoid X receptor (RXR) and Ultraspiracle (USP). RXR is a nuclear receptor in mammalian and USP is its counterpart in invertebrates. The native ligand of retinoid X receptor is 9-cis retinoic acid (RA). RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. RXRs can play different roles in these heterodimers. It acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, functioning as a receptor for 9-cis RA, independently of other nuclear receptors. Ultraspiracle (USP) plays similar roles as DNA binding partner of other nuclear rec eptors in invertebrates. USP has no known high-affinity ligand and is thought to be a silent component in the heterodimeric complex with partner receptors. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, RXR and USP have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; KO "K08524"; similar_genes "USP_MANSE(e-value:4.0e-44;bit-score:176.0)"; Scaffold006 rebuild exon 1186314 1186786 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; Scaffold006 rebuild exon 1187097 1187327 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; Scaffold006 rebuild exon 1187393 1187558 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; Scaffold006 rebuild exon 1187744 1188063 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; Scaffold006 rebuild exon 1188146 1188303 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; Scaffold006 rebuild exon 1189209 1189561 . - . gene_id "RvY_11423"; transcript_id "RvY_11423.1"; Scaffold006 rebuild transcript 1189782 1190126 . + . gene_id "RvY_11424"; transcript_id "RvY_11424.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1189782 1190126 . + . gene_id "RvY_11424"; transcript_id "RvY_11424.1"; Scaffold006 rebuild transcript 1190792 1196867 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; annotation "hypothetical protein."; Pfam "[RFX_DNA_binding] RFX DNA-binding domain"; Scaffold006 rebuild exon 1190792 1191268 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1191727 1191880 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1192169 1192413 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1192685 1192831 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1192919 1193016 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1193088 1193236 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1193334 1193416 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1193586 1193952 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1194352 1194477 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1194574 1194755 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1195053 1195647 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1195798 1195837 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1195940 1196032 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1196141 1196248 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1196479 1196616 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1196683 1196745 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild exon 1196807 1196867 . - . gene_id "RvY_11425"; transcript_id "RvY_11425.1"; Scaffold006 rebuild transcript 1197785 1199652 . + . gene_id "RvY_11426"; transcript_id "RvY_11426.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; KO "K14412"; Scaffold006 rebuild exon 1197785 1197944 . + . gene_id "RvY_11426"; transcript_id "RvY_11426.1"; Scaffold006 rebuild exon 1198173 1198608 . + . gene_id "RvY_11426"; transcript_id "RvY_11426.1"; Scaffold006 rebuild exon 1198965 1199266 . + . gene_id "RvY_11426"; transcript_id "RvY_11426.1"; Scaffold006 rebuild exon 1199351 1199652 . + . gene_id "RvY_11426"; transcript_id "RvY_11426.1"; Scaffold006 rebuild transcript 1199861 1203711 . - . gene_id "RvY_11427"; transcript_id "RvY_11427.1"; gene_name "FZD4"; annotation "frizzled 4"; Pfam "[Fz]|[Frizzled] Frizzled/Smoothened family membrane region"; KO "K02354"; Scaffold006 rebuild exon 1199861 1200191 . - . gene_id "RvY_11427"; transcript_id "RvY_11427.1"; Scaffold006 rebuild exon 1200454 1200931 . - . gene_id "RvY_11427"; transcript_id "RvY_11427.1"; Scaffold006 rebuild exon 1201178 1201962 . - . gene_id "RvY_11427"; transcript_id "RvY_11427.1"; Scaffold006 rebuild exon 1202815 1203281 . - . gene_id "RvY_11427"; transcript_id "RvY_11427.1"; Scaffold006 rebuild exon 1203709 1203711 . - . gene_id "RvY_11427"; transcript_id "RvY_11427.1"; Scaffold006 rebuild transcript 1203897 1204235 . + . gene_id "RvY_11428"; transcript_id "RvY_11428.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1203897 1204235 . + . gene_id "RvY_11428"; transcript_id "RvY_11428.1"; Scaffold006 rebuild transcript 1204246 1204605 . + . gene_id "RvY_11429"; transcript_id "RvY_11429.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1204246 1204605 . + . gene_id "RvY_11429"; transcript_id "RvY_11429.1"; Scaffold006 rebuild transcript 1204537 1206355 . - . gene_id "RvY_11430"; transcript_id "RvY_11430.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1204537 1204857 . - . gene_id "RvY_11430"; transcript_id "RvY_11430.1"; Scaffold006 rebuild exon 1206290 1206355 . - . gene_id "RvY_11430"; transcript_id "RvY_11430.1"; Scaffold006 rebuild transcript 1207162 1207302 . + . gene_id "RvY_11431"; transcript_id "RvY_11431.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1207162 1207302 . + . gene_id "RvY_11431"; transcript_id "RvY_11431.1"; Scaffold006 rebuild transcript 1209346 1212992 . - . gene_id "RvY_11432"; transcript_id "RvY_11432.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1209346 1209532 . - . gene_id "RvY_11432"; transcript_id "RvY_11432.1"; Scaffold006 rebuild exon 1210713 1211103 . - . gene_id "RvY_11432"; transcript_id "RvY_11432.1"; Scaffold006 rebuild exon 1212923 1212992 . - . gene_id "RvY_11432"; transcript_id "RvY_11432.1"; Scaffold006 rebuild transcript 1215627 1223197 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; gene_name "CAMK2"; annotation "Calcium/calmodulin-dependent protein kinase type II alpha chain"; Pfam "[SnoaL_3] SnoaL-like domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[CaMKII_AD] Calcium/calmodulin dependent protein kinase II Association"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.17"; KO "K04515"; similar_genes "KCC2A_DROME(e-value:1.5e-149;bit-score:526.0)"; Scaffold006 rebuild exon 1215627 1215750 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1215950 1216064 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1216144 1216238 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1216303 1216679 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1219318 1219619 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1220135 1220321 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1220407 1220545 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1221071 1221125 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1221418 1221477 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1222064 1222158 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild exon 1223106 1223197 . - . gene_id "RvY_11433"; transcript_id "RvY_11433.1"; Scaffold006 rebuild transcript 1224720 1224887 . + . gene_id "RvY_11434"; transcript_id "RvY_11434.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1224720 1224887 . + . gene_id "RvY_11434"; transcript_id "RvY_11434.1"; Scaffold006 rebuild transcript 1226451 1233398 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; gene_name "C1"; annotation "hypothetical protein."; Pfam "[KSR1-SAM] SAM like domain present in kinase suppressor RAS 1"; CDD "Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains."; Scaffold006 rebuild exon 1226451 1226642 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1226907 1227132 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1227376 1227503 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1227626 1227941 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1228401 1228598 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1228659 1229081 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1229331 1229685 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1229928 1230153 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1230215 1230529 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1231702 1232217 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1232286 1232440 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild exon 1232828 1233398 . + . gene_id "RvY_11435"; transcript_id "RvY_11435.1"; Scaffold006 rebuild transcript 1235083 1236830 . + . gene_id "RvY_11436"; transcript_id "RvY_11436.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; similar_genes "KSR2_MOUSE(e-value:8.4e-19;bit-score:92.0)"; Scaffold006 rebuild exon 1235083 1235426 . + . gene_id "RvY_11436"; transcript_id "RvY_11436.1"; Scaffold006 rebuild exon 1235704 1236107 . + . gene_id "RvY_11436"; transcript_id "RvY_11436.1"; Scaffold006 rebuild exon 1236388 1236830 . + . gene_id "RvY_11436"; transcript_id "RvY_11436.1"; Scaffold006 rebuild transcript 1235750 1236082 . - . gene_id "RvY_11437"; transcript_id "RvY_11437.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1235750 1236082 . - . gene_id "RvY_11437"; transcript_id "RvY_11437.1"; Scaffold006 rebuild transcript 1237855 1238438 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1237855 1238045 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.1"; Scaffold006 rebuild exon 1238113 1238279 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.1"; Scaffold006 rebuild exon 1238386 1238438 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.1"; Scaffold006 rebuild transcript 1238030 1238544 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1238030 1238045 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.2"; Scaffold006 rebuild exon 1238113 1238279 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.2"; Scaffold006 rebuild exon 1238386 1238544 . + . gene_id "RvY_11438"; transcript_id "RvY_11438.2"; Scaffold006 rebuild transcript 1238775 1239566 . + . gene_id "RvY_11439"; transcript_id "RvY_11439.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1238775 1238868 . + . gene_id "RvY_11439"; transcript_id "RvY_11439.1"; Scaffold006 rebuild exon 1239298 1239566 . + . gene_id "RvY_11439"; transcript_id "RvY_11439.1"; Scaffold006 rebuild transcript 1239930 1240329 . + . gene_id "RvY_11440"; transcript_id "RvY_11440.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1239930 1239994 . + . gene_id "RvY_11440"; transcript_id "RvY_11440.1"; Scaffold006 rebuild exon 1240059 1240329 . + . gene_id "RvY_11440"; transcript_id "RvY_11440.1"; Scaffold006 rebuild transcript 1240379 1243262 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; gene_name "STK38"; annotation "Serine/threonine-protein kinase tricorner"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_NDR_like: Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases."; EC "EC2.7.11.1"; KO "K08790"; similar_genes "TRC_DROME(e-value:3.0e-95;bit-score:345.0)"; Scaffold006 rebuild exon 1240379 1240545 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1240612 1240802 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1240882 1241005 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1241314 1241431 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1241510 1241577 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1241679 1241772 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1241865 1242019 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1242262 1242385 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1242483 1242566 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1242639 1242761 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1242979 1243030 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild exon 1243093 1243262 . - . gene_id "RvY_11441"; transcript_id "RvY_11441.1"; Scaffold006 rebuild transcript 1244786 1246329 . - . gene_id "RvY_11442"; transcript_id "RvY_11442.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1244786 1245502 . - . gene_id "RvY_11442"; transcript_id "RvY_11442.1"; Scaffold006 rebuild exon 1245611 1245784 . - . gene_id "RvY_11442"; transcript_id "RvY_11442.1"; Scaffold006 rebuild exon 1245848 1246032 . - . gene_id "RvY_11442"; transcript_id "RvY_11442.1"; Scaffold006 rebuild exon 1246122 1246329 . - . gene_id "RvY_11442"; transcript_id "RvY_11442.1"; Scaffold006 rebuild transcript 1247447 1250704 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; gene_name "PGD"; annotation "6-phosphogluconate dehydrogenase, decarboxylating"; Pfam "[NAD_binding_2] NAD binding domain of 6-phosphogluconate dehydrogenase|[6PGD] 6-phosphogluconate dehydrogenase, C-terminal domain"; CDD "6-phosphogluconate dehydrogenase; Validated"; EC "EC1.1.1.44"; KO "K00033"; similar_genes "6PGD_CAEEL(e-value:7.8e-132;bit-score:467.0)"; Scaffold006 rebuild exon 1247447 1247460 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1247531 1247606 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1247703 1247834 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1247898 1247964 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1248037 1248152 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1248316 1248365 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1248557 1248758 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1248825 1249014 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1249323 1249450 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1249726 1249859 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1249946 1250045 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1250124 1250246 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild exon 1250585 1250704 . + . gene_id "RvY_11443"; transcript_id "RvY_11443.1"; Scaffold006 rebuild transcript 1251358 1252373 . - . gene_id "RvY_11444"; transcript_id "RvY_11444.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1251358 1251381 . - . gene_id "RvY_11444"; transcript_id "RvY_11444.1"; Scaffold006 rebuild exon 1251458 1251760 . - . gene_id "RvY_11444"; transcript_id "RvY_11444.1"; Scaffold006 rebuild exon 1251838 1252010 . - . gene_id "RvY_11444"; transcript_id "RvY_11444.1"; Scaffold006 rebuild exon 1252145 1252373 . - . gene_id "RvY_11444"; transcript_id "RvY_11444.1"; Scaffold006 rebuild transcript 1253110 1256178 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; annotation "hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A1_MUSCO(e-value:7.2e-16;bit-score:82.0)"; Scaffold006 rebuild exon 1253110 1253271 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1253344 1253526 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1254158 1254321 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1254385 1254421 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1254493 1254621 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1254700 1254727 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1254791 1255000 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1255120 1255223 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1255357 1255392 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1255454 1255536 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1255669 1255751 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild exon 1255826 1256178 . - . gene_id "RvY_11445"; transcript_id "RvY_11445.1"; Scaffold006 rebuild transcript 1257526 1257762 . - . gene_id "RvY_11446"; transcript_id "RvY_11446.1"; annotation "hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "SC6A9_XENLA(e-value:1.6e-13;bit-score:74.0)"; Scaffold006 rebuild exon 1257526 1257762 . - . gene_id "RvY_11446"; transcript_id "RvY_11446.1"; Scaffold006 rebuild transcript 1257989 1258138 . - . gene_id "RvY_11447"; transcript_id "RvY_11447.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1257989 1258138 . - . gene_id "RvY_11447"; transcript_id "RvY_11447.1"; Scaffold006 rebuild transcript 1258916 1261085 . - . gene_id "RvY_11448"; transcript_id "RvY_11448.1"; gene_name "GRB2"; annotation "Growth factor receptor-bound protein 2"; Pfam "[SH3_2] Variant SH3 domain|[SH2]|[SH3_1] SH3 domain"; KO "K04364"; similar_genes "GRB2_HUMAN(e-value:3.0e-59;bit-score:226.0)"; Scaffold006 rebuild exon 1258916 1259101 . - . gene_id "RvY_11448"; transcript_id "RvY_11448.1"; Scaffold006 rebuild exon 1260249 1260414 . - . gene_id "RvY_11448"; transcript_id "RvY_11448.1"; Scaffold006 rebuild exon 1260476 1260598 . - . gene_id "RvY_11448"; transcript_id "RvY_11448.1"; Scaffold006 rebuild exon 1260698 1260795 . - . gene_id "RvY_11448"; transcript_id "RvY_11448.1"; Scaffold006 rebuild exon 1261008 1261085 . - . gene_id "RvY_11448"; transcript_id "RvY_11448.1"; Scaffold006 rebuild transcript 1262861 1264301 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1262861 1262942 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.1"; Scaffold006 rebuild exon 1263243 1263414 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.1"; Scaffold006 rebuild exon 1263493 1263541 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.1"; Scaffold006 rebuild exon 1264170 1264301 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.1"; Scaffold006 rebuild transcript 1262861 1264023 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1262861 1262942 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.2"; Scaffold006 rebuild exon 1263243 1263414 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.2"; Scaffold006 rebuild exon 1263493 1263541 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.2"; Scaffold006 rebuild exon 1263961 1264023 . + . gene_id "RvY_11449"; transcript_id "RvY_11449.2"; Scaffold006 rebuild transcript 1265130 1265321 . - . gene_id "RvY_11450"; transcript_id "RvY_11450.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1265130 1265321 . - . gene_id "RvY_11450"; transcript_id "RvY_11450.1"; Scaffold006 rebuild transcript 1267533 1270092 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; product "RXR_LBD"; gene_name "NR_LBD_RXR_like"; annotation "RXR_LBD | putative Retinoic acid receptor RXR-gamma-B"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily. The ligand binding domain of the retinoid X receptor (RXR) and Ultraspiracle (USP): This family includes two evolutionary related nuclear receptors: retinoid X receptor (RXR) and Ultraspiracle (USP). RXR is a nuclear receptor in mammalian and USP is its counterpart in invertebrates. The native ligand of retinoid X receptor is 9-cis retinoic acid (RA). RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. RXRs can play different roles in these heterodimers. It acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, functioning as a receptor for 9-cis RA, independently of other nuclear receptors. Ultraspiracle (USP) plays similar roles as DNA binding partner of other nuclear rec eptors in invertebrates. USP has no known high-affinity ligand and is thought to be a silent component in the heterodimeric complex with partner receptors. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, RXR and USP have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; similar_genes "RXRGB_DANRE(e-value:6.0e-28;bit-score:122.0)"; Scaffold006 rebuild exon 1267533 1267975 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; Scaffold006 rebuild exon 1268323 1268553 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; Scaffold006 rebuild exon 1268626 1268791 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; Scaffold006 rebuild exon 1269256 1269524 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; Scaffold006 rebuild exon 1269583 1269740 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; Scaffold006 rebuild exon 1269800 1270092 . - . gene_id "RvY_11451"; transcript_id "RvY_11451.1"; Scaffold006 rebuild transcript 1272064 1273511 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1272064 1272361 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.1"; Scaffold006 rebuild exon 1272419 1272853 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.1"; Scaffold006 rebuild exon 1273108 1273511 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.1"; Scaffold006 rebuild transcript 1271725 1272544 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1271725 1271935 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.2"; Scaffold006 rebuild exon 1272054 1272361 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.2"; Scaffold006 rebuild exon 1272419 1272544 . + . gene_id "RvY_11452"; transcript_id "RvY_11452.2"; Scaffold006 rebuild transcript 1274209 1275141 . + . gene_id "RvY_11453"; transcript_id "RvY_11453.1"; gene_name "FUSIP1"; annotation "putative Splicing factor, arginine/serine-rich 13A"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K12900"; similar_genes "SF13A_HUMAN(e-value:2.3e-29;bit-score:127.0)"; Scaffold006 rebuild exon 1274209 1274261 . + . gene_id "RvY_11453"; transcript_id "RvY_11453.1"; Scaffold006 rebuild exon 1274393 1274497 . + . gene_id "RvY_11453"; transcript_id "RvY_11453.1"; Scaffold006 rebuild exon 1274595 1274698 . + . gene_id "RvY_11453"; transcript_id "RvY_11453.1"; Scaffold006 rebuild exon 1274813 1274942 . + . gene_id "RvY_11453"; transcript_id "RvY_11453.1"; Scaffold006 rebuild exon 1275000 1275141 . + . gene_id "RvY_11453"; transcript_id "RvY_11453.1"; Scaffold006 rebuild transcript 1277382 1279536 . - . gene_id "RvY_11454"; transcript_id "RvY_11454.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1277382 1277687 . - . gene_id "RvY_11454"; transcript_id "RvY_11454.1"; Scaffold006 rebuild exon 1278966 1279411 . - . gene_id "RvY_11454"; transcript_id "RvY_11454.1"; Scaffold006 rebuild exon 1279467 1279536 . - . gene_id "RvY_11454"; transcript_id "RvY_11454.1"; Scaffold006 rebuild transcript 1280489 1282656 . + . gene_id "RvY_11455"; transcript_id "RvY_11455.1"; gene_name "CNOT7_8"; annotation "CCR4-NOT transcription complex subunit 7/8"; Pfam "[CAF1] CAF1 family ribonuclease"; CDD "mRNA deadenylase subunit [RNA processing and modification]"; KO "K12581"; similar_genes "CNOT7_XENLA(e-value:2.2e-23;bit-score:107.0)"; Scaffold006 rebuild exon 1280489 1280908 . + . gene_id "RvY_11455"; transcript_id "RvY_11455.1"; Scaffold006 rebuild exon 1281274 1281564 . + . gene_id "RvY_11455"; transcript_id "RvY_11455.1"; Scaffold006 rebuild exon 1281646 1281937 . + . gene_id "RvY_11455"; transcript_id "RvY_11455.1"; Scaffold006 rebuild exon 1282472 1282656 . + . gene_id "RvY_11455"; transcript_id "RvY_11455.1"; Scaffold006 rebuild transcript 1283390 1284572 . - . gene_id "RvY_11456"; transcript_id "RvY_11456.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold006 rebuild exon 1283390 1283533 . - . gene_id "RvY_11456"; transcript_id "RvY_11456.1"; Scaffold006 rebuild exon 1283628 1284572 . - . gene_id "RvY_11456"; transcript_id "RvY_11456.1"; Scaffold006 rebuild transcript 1285601 1286321 . + . gene_id "RvY_11457"; transcript_id "RvY_11457.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1285601 1285737 . + . gene_id "RvY_11457"; transcript_id "RvY_11457.1"; Scaffold006 rebuild exon 1286252 1286321 . + . gene_id "RvY_11457"; transcript_id "RvY_11457.1"; Scaffold006 rebuild transcript 1286428 1287757 . - . gene_id "RvY_11458"; transcript_id "RvY_11458.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1286428 1287342 . - . gene_id "RvY_11458"; transcript_id "RvY_11458.1"; Scaffold006 rebuild exon 1287438 1287526 . - . gene_id "RvY_11458"; transcript_id "RvY_11458.1"; Scaffold006 rebuild exon 1287562 1287757 . - . gene_id "RvY_11458"; transcript_id "RvY_11458.1"; Scaffold006 rebuild transcript 1288564 1289848 . - . gene_id "RvY_11459"; transcript_id "RvY_11459.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1288564 1288806 . - . gene_id "RvY_11459"; transcript_id "RvY_11459.1"; Scaffold006 rebuild exon 1289030 1289370 . - . gene_id "RvY_11459"; transcript_id "RvY_11459.1"; Scaffold006 rebuild exon 1289557 1289848 . - . gene_id "RvY_11459"; transcript_id "RvY_11459.1"; Scaffold006 rebuild transcript 1290499 1291086 . + . gene_id "RvY_11460"; transcript_id "RvY_11460.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1290499 1290582 . + . gene_id "RvY_11460"; transcript_id "RvY_11460.1"; Scaffold006 rebuild exon 1290771 1290945 . + . gene_id "RvY_11460"; transcript_id "RvY_11460.1"; Scaffold006 rebuild exon 1291007 1291086 . + . gene_id "RvY_11460"; transcript_id "RvY_11460.1"; Scaffold006 rebuild transcript 1293968 1294580 . + . gene_id "RvY_11461"; transcript_id "RvY_11461.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1293968 1294240 . + . gene_id "RvY_11461"; transcript_id "RvY_11461.1"; Scaffold006 rebuild exon 1294461 1294580 . + . gene_id "RvY_11461"; transcript_id "RvY_11461.1"; Scaffold006 rebuild transcript 1296225 1301056 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; gene_name "(1)LGR7"; annotation "(1)leucine-rich repeat-containing G protein-coupled receptor 7(2)hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; KO "(1)K04306"; Scaffold006 rebuild exon 1296225 1296471 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1296713 1297043 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1297104 1297172 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1297466 1297606 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1297672 1297743 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1297822 1297893 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1298068 1298211 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1298285 1298356 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1298617 1298688 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1298839 1299104 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1299178 1299306 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1299568 1300059 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1300449 1300613 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild exon 1300704 1301056 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.1"; Scaffold006 rebuild transcript 1296225 1300073 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; gene_name "(1)LGR7"; annotation "(1)leucine-rich repeat-containing G protein-coupled receptor 7(2)hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; KO "(1)K04306"; Scaffold006 rebuild exon 1296225 1296471 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1296713 1297043 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1297104 1297172 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1297466 1297606 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1297672 1297743 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1297822 1297893 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1298068 1298211 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1298285 1298356 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1298617 1298688 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1298839 1299104 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1299178 1299306 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild exon 1299568 1300073 . + . gene_id "RvY_11462"; transcript_id "RvY_11462.2"; Scaffold006 rebuild transcript 1301423 1302642 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.1"; annotation "hypothetical protein."; Pfam "[Ig_3] Immunoglobulin domain"; Scaffold006 rebuild exon 1301423 1301707 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.1"; Scaffold006 rebuild exon 1301776 1302080 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.1"; Scaffold006 rebuild exon 1302159 1302384 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.1"; Scaffold006 rebuild exon 1302529 1302642 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.1"; Scaffold006 rebuild transcript 1301761 1302905 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.2"; annotation "hypothetical protein."; Pfam "[Ig_3] Immunoglobulin domain"; Scaffold006 rebuild exon 1301761 1302080 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.2"; Scaffold006 rebuild exon 1302159 1302384 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.2"; Scaffold006 rebuild exon 1302529 1302710 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.2"; Scaffold006 rebuild exon 1302845 1302905 . - . gene_id "RvY_11463"; transcript_id "RvY_11463.2"; Scaffold006 rebuild transcript 1304197 1304466 . - . gene_id "RvY_11464"; transcript_id "RvY_11464.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1304197 1304466 . - . gene_id "RvY_11464"; transcript_id "RvY_11464.1"; Scaffold006 rebuild transcript 1305069 1308662 . + . gene_id "RvY_11465"; transcript_id "RvY_11465.1"; gene_name "SMC_prok_A"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent."; Scaffold006 rebuild exon 1305069 1305290 . + . gene_id "RvY_11465"; transcript_id "RvY_11465.1"; Scaffold006 rebuild exon 1305556 1306211 . + . gene_id "RvY_11465"; transcript_id "RvY_11465.1"; Scaffold006 rebuild exon 1306607 1306943 . + . gene_id "RvY_11465"; transcript_id "RvY_11465.1"; Scaffold006 rebuild exon 1307144 1307723 . + . gene_id "RvY_11465"; transcript_id "RvY_11465.1"; Scaffold006 rebuild exon 1307974 1308662 . + . gene_id "RvY_11465"; transcript_id "RvY_11465.1"; Scaffold006 rebuild transcript 1308826 1312349 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 1308826 1308870 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1309133 1309276 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1309339 1309563 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1309626 1309949 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1310807 1310950 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1310994 1311436 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1311603 1311765 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1311868 1312195 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild exon 1312210 1312349 . - . gene_id "RvY_11466"; transcript_id "RvY_11466.1"; Scaffold006 rebuild transcript 1316112 1318144 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; gene_name "Peptidase_C1A_CathepsinB"; annotation "putative Cathepsin B-like cysteine proteinase"; Pfam "[Peptidase_C1] Papain family cysteine protease|[Propeptide_C1] Peptidase family C1 propeptide"; CDD "Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its Scaffold006 rebuild exon 1316112 1316332 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild exon 1316640 1316756 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild exon 1317068 1317291 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild exon 1317401 1317516 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild exon 1317611 1317823 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild exon 1317916 1317946 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild exon 1318020 1318144 . - . gene_id "RvY_11467"; transcript_id "RvY_11467.1"; Scaffold006 rebuild transcript 1323718 1327543 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; gene_name "(1)Ig2_Contactin-2-like(2)Ig6_Contactin_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|(1)[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(1)[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1)Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.(2)Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma."; similar_genes "(1)CONT_DROME(e-value:8.0e-13;bit-score:72.0)(2)CONT_DROME(e-value:1.0e-06;bit-score:51.0)"; Scaffold006 rebuild exon 1323718 1324376 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1324432 1324781 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1324873 1325562 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1325630 1326029 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1326275 1326471 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1326551 1326710 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1326770 1327088 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1327172 1327368 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild exon 1327462 1327543 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.1"; Scaffold006 rebuild transcript 1322746 1325096 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; gene_name "(1)Ig2_Contactin-2-like(2)Ig6_Contactin_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[fn3] Fibronectin type III domain|(1)[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|(1)[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1)Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.(2)Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma."; similar_genes "(1)CONT_DROME(e-value:8.0e-13;bit-score:72.0)(2)CONT_DROME(e-value:1.0e-06;bit-score:51.0)"; Scaffold006 rebuild exon 1322746 1323059 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; Scaffold006 rebuild exon 1323131 1323317 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; Scaffold006 rebuild exon 1323544 1323662 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; Scaffold006 rebuild exon 1323729 1324376 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; Scaffold006 rebuild exon 1324432 1324781 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; Scaffold006 rebuild exon 1324873 1325096 . - . gene_id "RvY_11468"; transcript_id "RvY_11468.2"; Scaffold006 rebuild transcript 1328995 1329385 . + . gene_id "RvY_11469"; transcript_id "RvY_11469.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1328995 1329140 . + . gene_id "RvY_11469"; transcript_id "RvY_11469.1"; Scaffold006 rebuild exon 1329247 1329385 . + . gene_id "RvY_11469"; transcript_id "RvY_11469.1"; Scaffold006 rebuild transcript 1329637 1332969 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; gene_name "DM10"; annotation "hypothetical protein."; Pfam "[DUF1126] Repeat of unknown function (DUF1126)"; CDD "Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases."; Scaffold006 rebuild exon 1329637 1329810 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1329898 1330090 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1330158 1330245 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1330310 1330783 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1331015 1331357 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1331417 1331674 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1331739 1332050 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1332263 1332574 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1332662 1332701 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild exon 1332815 1332969 . - . gene_id "RvY_11470"; transcript_id "RvY_11470.1"; Scaffold006 rebuild transcript 1333907 1334194 . + . gene_id "RvY_11471"; transcript_id "RvY_11471.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1333907 1334194 . + . gene_id "RvY_11471"; transcript_id "RvY_11471.1"; Scaffold006 rebuild transcript 1335425 1335960 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1335425 1335565 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.1"; Scaffold006 rebuild exon 1335687 1335806 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.1"; Scaffold006 rebuild exon 1335889 1335960 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.1"; Scaffold006 rebuild transcript 1335475 1336001 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1335475 1335565 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.2"; Scaffold006 rebuild exon 1335687 1335806 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.2"; Scaffold006 rebuild exon 1335889 1336001 . + . gene_id "RvY_11472"; transcript_id "RvY_11472.2"; Scaffold006 rebuild transcript 1338348 1338563 . + . gene_id "RvY_11473"; transcript_id "RvY_11473.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1338348 1338563 . + . gene_id "RvY_11473"; transcript_id "RvY_11473.1"; Scaffold006 rebuild transcript 1338668 1339075 . - . gene_id "RvY_11474"; transcript_id "RvY_11474.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1338668 1339075 . - . gene_id "RvY_11474"; transcript_id "RvY_11474.1"; Scaffold006 rebuild transcript 1339077 1341127 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; gene_name "PDZ_signaling"; annotation "hypothetical protein."; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; Scaffold006 rebuild exon 1339077 1339269 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild exon 1339337 1339674 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild exon 1339773 1339884 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild exon 1339956 1340176 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild exon 1340428 1340707 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild exon 1340770 1340918 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild exon 1341008 1341127 . - . gene_id "RvY_11475"; transcript_id "RvY_11475.1"; Scaffold006 rebuild transcript 1344366 1347621 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1344366 1344515 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; Scaffold006 rebuild exon 1345808 1345910 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; Scaffold006 rebuild exon 1346143 1346475 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; Scaffold006 rebuild exon 1346741 1347193 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; Scaffold006 rebuild exon 1347259 1347525 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; Scaffold006 rebuild exon 1347587 1347621 . + . gene_id "RvY_11476"; transcript_id "RvY_11476.1"; Scaffold006 rebuild transcript 1348048 1348290 . - . gene_id "RvY_11477"; transcript_id "RvY_11477.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1348048 1348290 . - . gene_id "RvY_11477"; transcript_id "RvY_11477.1"; Scaffold006 rebuild transcript 1348930 1349298 . - . gene_id "RvY_11478"; transcript_id "RvY_11478.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1348930 1349298 . - . gene_id "RvY_11478"; transcript_id "RvY_11478.1"; Scaffold006 rebuild transcript 1350163 1351464 . + . gene_id "RvY_11479"; transcript_id "RvY_11479.1"; gene_name "COG0790"; annotation "hypothetical protein."; Pfam "[Sel1] Sel1 repeat"; CDD "FOG: TPR repeat, SEL1 subfamily [General function prediction only]"; Scaffold006 rebuild exon 1350163 1350664 . + . gene_id "RvY_11479"; transcript_id "RvY_11479.1"; Scaffold006 rebuild exon 1350759 1351082 . + . gene_id "RvY_11479"; transcript_id "RvY_11479.1"; Scaffold006 rebuild exon 1351160 1351464 . + . gene_id "RvY_11479"; transcript_id "RvY_11479.1"; Scaffold006 rebuild transcript 1351498 1351848 . + . gene_id "RvY_11480"; transcript_id "RvY_11480.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1351498 1351848 . + . gene_id "RvY_11480"; transcript_id "RvY_11480.1"; Scaffold006 rebuild transcript 1353997 1355225 . - . gene_id "RvY_11481"; transcript_id "RvY_11481.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold006 rebuild exon 1353997 1354489 . - . gene_id "RvY_11481"; transcript_id "RvY_11481.1"; Scaffold006 rebuild exon 1354861 1355225 . - . gene_id "RvY_11481"; transcript_id "RvY_11481.1"; Scaffold006 rebuild transcript 1356688 1358192 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; gene_name "(1)CRLS(2)pgsA"; annotation "(1)Cardiolipin synthase(2)hypothetical protein."; Pfam "[CDP-OH_P_transf] CDP-alcohol phosphatidyltransferase"; CDD "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase."; EC "EC2.7.8.-"; KO "(1)K08744"; similar_genes "(1)CRLS1_RAT(e-value:8.3e-53;bit-score:204.0)(2)CRLS1_DROME(e-value:7.4e-20;bit-score:95.0)"; Scaffold006 rebuild exon 1356688 1356790 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild exon 1356887 1356978 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild exon 1357074 1357142 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild exon 1357214 1357299 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild exon 1357390 1357519 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild exon 1357626 1357763 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild exon 1357908 1358192 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.1"; Scaffold006 rebuild transcript 1357358 1358285 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.2"; gene_name "(1)CRLS(2)pgsA"; annotation "(1)Cardiolipin synthase(2)hypothetical protein."; Pfam "[CDP-OH_P_transf] CDP-alcohol phosphatidyltransferase"; CDD "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase."; EC "EC2.7.8.-"; KO "(1)K08744"; similar_genes "(1)CRLS1_RAT(e-value:8.3e-53;bit-score:204.0)(2)CRLS1_DROME(e-value:7.4e-20;bit-score:95.0)"; Scaffold006 rebuild exon 1357358 1357519 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.2"; Scaffold006 rebuild exon 1357626 1357763 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.2"; Scaffold006 rebuild exon 1357908 1358285 . - . gene_id "RvY_11482"; transcript_id "RvY_11482.2"; Scaffold006 rebuild transcript 1361664 1362830 . + . gene_id "RvY_11483"; transcript_id "RvY_11483.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1361664 1361859 . + . gene_id "RvY_11483"; transcript_id "RvY_11483.1"; Scaffold006 rebuild exon 1362188 1362463 . + . gene_id "RvY_11483"; transcript_id "RvY_11483.1"; Scaffold006 rebuild exon 1362601 1362830 . + . gene_id "RvY_11483"; transcript_id "RvY_11483.1"; Scaffold006 rebuild transcript 1364030 1364608 . - . gene_id "RvY_11484"; transcript_id "RvY_11484.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 1364030 1364608 . - . gene_id "RvY_11484"; transcript_id "RvY_11484.1"; Scaffold006 rebuild transcript 1364636 1364875 . - . gene_id "RvY_11485"; transcript_id "RvY_11485.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1364636 1364875 . - . gene_id "RvY_11485"; transcript_id "RvY_11485.1"; Scaffold006 rebuild transcript 1364904 1365998 . - . gene_id "RvY_11486"; transcript_id "RvY_11486.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1364904 1365129 . - . gene_id "RvY_11486"; transcript_id "RvY_11486.1"; Scaffold006 rebuild exon 1365587 1365795 . - . gene_id "RvY_11486"; transcript_id "RvY_11486.1"; Scaffold006 rebuild exon 1365876 1365998 . - . gene_id "RvY_11486"; transcript_id "RvY_11486.1"; Scaffold006 rebuild transcript 1367034 1367300 . + . gene_id "RvY_11487"; transcript_id "RvY_11487.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1367034 1367300 . + . gene_id "RvY_11487"; transcript_id "RvY_11487.1"; Scaffold006 rebuild transcript 1369324 1370028 . + . gene_id "RvY_11488"; transcript_id "RvY_11488.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1369324 1369456 . + . gene_id "RvY_11488"; transcript_id "RvY_11488.1"; Scaffold006 rebuild exon 1369997 1370028 . + . gene_id "RvY_11488"; transcript_id "RvY_11488.1"; Scaffold006 rebuild transcript 1372800 1373204 . + . gene_id "RvY_11489"; transcript_id "RvY_11489.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1372800 1373204 . + . gene_id "RvY_11489"; transcript_id "RvY_11489.1"; Scaffold006 rebuild transcript 1373268 1374648 . + . gene_id "RvY_11490"; transcript_id "RvY_11490.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1373268 1373290 . + . gene_id "RvY_11490"; transcript_id "RvY_11490.1"; Scaffold006 rebuild exon 1373404 1373641 . + . gene_id "RvY_11490"; transcript_id "RvY_11490.1"; Scaffold006 rebuild exon 1374508 1374648 . + . gene_id "RvY_11490"; transcript_id "RvY_11490.1"; Scaffold006 rebuild transcript 1374664 1375172 . + . gene_id "RvY_11491"; transcript_id "RvY_11491.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1374664 1374822 . + . gene_id "RvY_11491"; transcript_id "RvY_11491.1"; Scaffold006 rebuild exon 1374894 1375172 . + . gene_id "RvY_11491"; transcript_id "RvY_11491.1"; Scaffold006 rebuild transcript 1375558 1376476 . - . gene_id "RvY_11492"; transcript_id "RvY_11492.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1375558 1375983 . - . gene_id "RvY_11492"; transcript_id "RvY_11492.1"; Scaffold006 rebuild exon 1376363 1376476 . - . gene_id "RvY_11492"; transcript_id "RvY_11492.1"; Scaffold006 rebuild transcript 1381767 1392470 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; gene_name "LamG"; annotation "hypothetical protein."; Pfam "[Laminin_G_2] Laminin G domain|[EGF] EGF-like domain|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain."; similar_genes "NRX1A_BOVIN(e-value:2.6e-07;bit-score:53.0)"; Scaffold006 rebuild exon 1381767 1382616 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1384909 1385261 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1385326 1385865 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1385942 1386440 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1387473 1387877 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1388003 1388971 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1390556 1390734 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1390795 1391359 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1391415 1391585 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild exon 1391878 1392470 . + . gene_id "RvY_11493"; transcript_id "RvY_11493.1"; Scaffold006 rebuild transcript 1394658 1396263 . + . gene_id "RvY_11494"; transcript_id "RvY_11494.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "BARH2_DROME(e-value:5.7e-22;bit-score:102.0)"; Scaffold006 rebuild exon 1394658 1394886 . + . gene_id "RvY_11494"; transcript_id "RvY_11494.1"; Scaffold006 rebuild exon 1395727 1395997 . + . gene_id "RvY_11494"; transcript_id "RvY_11494.1"; Scaffold006 rebuild exon 1396083 1396263 . + . gene_id "RvY_11494"; transcript_id "RvY_11494.1"; Scaffold006 rebuild transcript 1398240 1400007 . - . gene_id "RvY_11495"; transcript_id "RvY_11495.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "BARH2_DROME(e-value:5.7e-22;bit-score:102.0)"; Scaffold006 rebuild exon 1398240 1398426 . - . gene_id "RvY_11495"; transcript_id "RvY_11495.1"; Scaffold006 rebuild exon 1398546 1398816 . - . gene_id "RvY_11495"; transcript_id "RvY_11495.1"; Scaffold006 rebuild exon 1399773 1400007 . - . gene_id "RvY_11495"; transcript_id "RvY_11495.1"; Scaffold006 rebuild transcript 1404083 1406427 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; gene_name "(1,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(1,3)[ANF_receptor] Receptor family ligand binding region|(2)[Sulfate_transp] Sulfate transporter family"; CDD "(1,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold006 rebuild exon 1404083 1404188 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1404277 1404367 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1404441 1404576 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1404681 1404908 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1404963 1405190 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1405296 1405334 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1405391 1405434 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1405491 1405786 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1405906 1405966 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild exon 1406118 1406427 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.1"; Scaffold006 rebuild transcript 1405462 1409674 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.2"; gene_name "(1,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(1,3)[ANF_receptor] Receptor family ligand binding region|(2)[Sulfate_transp] Sulfate transporter family"; CDD "(1,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold006 rebuild exon 1405462 1405786 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.2"; Scaffold006 rebuild exon 1405906 1405966 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.2"; Scaffold006 rebuild exon 1406118 1406614 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.2"; Scaffold006 rebuild exon 1409044 1409561 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.2"; Scaffold006 rebuild exon 1409618 1409674 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.2"; Scaffold006 rebuild transcript 1404150 1405527 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; gene_name "(1,3)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "(1,3)[ANF_receptor] Receptor family ligand binding region|(2)[Sulfate_transp] Sulfate transporter family"; CDD "(1,3)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold006 rebuild exon 1404150 1404188 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild exon 1404277 1404576 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild exon 1404681 1404908 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild exon 1404963 1405190 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild exon 1405296 1405334 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild exon 1405391 1405434 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild exon 1405491 1405527 . - . gene_id "RvY_11496"; transcript_id "RvY_11496.3"; Scaffold006 rebuild transcript 1410015 1411802 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1410015 1410048 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.1"; Scaffold006 rebuild exon 1410122 1410265 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.1"; Scaffold006 rebuild exon 1411350 1411488 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.1"; Scaffold006 rebuild exon 1411682 1411802 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.1"; Scaffold006 rebuild transcript 1411464 1411802 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1411464 1411802 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.2"; Scaffold006 rebuild transcript 1411346 1411802 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1411346 1411488 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.3"; Scaffold006 rebuild exon 1411682 1411802 . - . gene_id "RvY_11497"; transcript_id "RvY_11497.3"; Scaffold006 rebuild transcript 1414328 1414696 . - . gene_id "RvY_11498"; transcript_id "RvY_11498.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1414328 1414696 . - . gene_id "RvY_11498"; transcript_id "RvY_11498.1"; Scaffold006 rebuild transcript 1416143 1416886 . - . gene_id "RvY_11499"; transcript_id "RvY_11499.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 1416143 1416886 . - . gene_id "RvY_11499"; transcript_id "RvY_11499.1"; Scaffold006 rebuild transcript 1418408 1419731 . - . gene_id "RvY_11500"; transcript_id "RvY_11500.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 1418408 1418860 . - . gene_id "RvY_11500"; transcript_id "RvY_11500.1"; Scaffold006 rebuild exon 1419342 1419731 . - . gene_id "RvY_11500"; transcript_id "RvY_11500.1"; Scaffold006 rebuild transcript 1421622 1421813 . + . gene_id "RvY_11501"; transcript_id "RvY_11501.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1421622 1421813 . + . gene_id "RvY_11501"; transcript_id "RvY_11501.1"; Scaffold006 rebuild transcript 1424707 1425362 . - . gene_id "RvY_11502"; transcript_id "RvY_11502.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1424707 1425059 . - . gene_id "RvY_11502"; transcript_id "RvY_11502.1"; Scaffold006 rebuild exon 1425239 1425362 . - . gene_id "RvY_11502"; transcript_id "RvY_11502.1"; Scaffold006 rebuild transcript 1427192 1437864 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[PLAC] PLAC (protease and lacunin) domain|[Ig_2] Immunoglobulin domain|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain|[V-set] Immunoglobulin V-set domain|[ADAM_spacer1] ADAM-TS Spacer 1|[Ig_3] Immunoglobulin domain|[TSP_1] Thrombospondin type 1 domain"; EC "EC3.4.24.-"; similar_genes "ATS6_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold006 rebuild exon 1427192 1427284 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1427363 1427520 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1427649 1427806 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1428070 1428200 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1428469 1428595 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1428662 1428918 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1428979 1429241 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1429456 1429663 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1429739 1429918 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1430025 1430087 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1430157 1430264 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1430361 1430552 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1430880 1431446 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1431717 1432272 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1432338 1432459 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1432635 1432863 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1432933 1433056 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1433263 1433729 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1434152 1434421 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1434632 1434796 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1434867 1435052 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1435375 1435521 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1435610 1435681 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1435901 1436176 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1436343 1436456 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1436520 1436681 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1436747 1437019 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild exon 1437656 1437864 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.1"; Scaffold006 rebuild transcript 1426912 1437864 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[PLAC] PLAC (protease and lacunin) domain|[Ig_2] Immunoglobulin domain|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain|[V-set] Immunoglobulin V-set domain|[ADAM_spacer1] ADAM-TS Spacer 1|[Ig_3] Immunoglobulin domain|[TSP_1] Thrombospondin type 1 domain"; EC "EC3.4.24.-"; similar_genes "ATS6_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold006 rebuild exon 1426912 1426934 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1427224 1427284 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1427363 1427520 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1427649 1427806 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1428070 1428200 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1428469 1428595 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1428662 1428918 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1428979 1429241 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1429456 1429663 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1429739 1429918 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1430025 1430087 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1430157 1430264 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1430361 1430552 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1430880 1431446 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1431717 1432272 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1432338 1432459 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1432635 1432863 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1432933 1433056 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1433263 1433729 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1434152 1434421 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1434632 1434796 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1434867 1435052 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1435375 1435521 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1435610 1435681 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1435901 1436176 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1436343 1436456 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1436520 1436681 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1436747 1437019 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild exon 1437656 1437864 . + . gene_id "RvY_11503"; transcript_id "RvY_11503.2"; Scaffold006 rebuild transcript 1443625 1445380 . + . gene_id "RvY_11504"; transcript_id "RvY_11504.1"; gene_name "NPSR1"; annotation "neuropeptide S receptor 1"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K08376"; Scaffold006 rebuild exon 1443625 1444015 . + . gene_id "RvY_11504"; transcript_id "RvY_11504.1"; Scaffold006 rebuild exon 1444231 1444514 . + . gene_id "RvY_11504"; transcript_id "RvY_11504.1"; Scaffold006 rebuild exon 1444733 1445380 . + . gene_id "RvY_11504"; transcript_id "RvY_11504.1"; Scaffold006 rebuild transcript 1445940 1447756 . - . gene_id "RvY_11505"; transcript_id "RvY_11505.1"; gene_name "BMP2_4"; annotation "bone morphogenetic protein 2/4"; Pfam "[TGF_beta] Transforming growth factor beta like domain|[TGFb_propeptide] TGF-beta propeptide"; CDD "Transforming growth factor-beta (TGF-beta) family. Family members are Scaffold006 rebuild exon 1445940 1446976 . - . gene_id "RvY_11505"; transcript_id "RvY_11505.1"; Scaffold006 rebuild exon 1447291 1447756 . - . gene_id "RvY_11505"; transcript_id "RvY_11505.1"; Scaffold006 rebuild transcript 1448294 1448482 . + . gene_id "RvY_11506"; transcript_id "RvY_11506.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1448294 1448482 . + . gene_id "RvY_11506"; transcript_id "RvY_11506.1"; Scaffold006 rebuild transcript 1452885 1453298 . + . gene_id "RvY_11507"; transcript_id "RvY_11507.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1452885 1453298 . + . gene_id "RvY_11507"; transcript_id "RvY_11507.1"; Scaffold006 rebuild transcript 1453319 1453765 . + . gene_id "RvY_11508"; transcript_id "RvY_11508.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1453319 1453765 . + . gene_id "RvY_11508"; transcript_id "RvY_11508.1"; Scaffold006 rebuild transcript 1454018 1454809 . - . gene_id "RvY_11509"; transcript_id "RvY_11509.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1454018 1454441 . - . gene_id "RvY_11509"; transcript_id "RvY_11509.1"; Scaffold006 rebuild exon 1454667 1454809 . - . gene_id "RvY_11509"; transcript_id "RvY_11509.1"; Scaffold006 rebuild transcript 1454011 1454772 . - . gene_id "RvY_11509"; transcript_id "RvY_11509.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1454011 1454441 . - . gene_id "RvY_11509"; transcript_id "RvY_11509.2"; Scaffold006 rebuild exon 1454667 1454772 . - . gene_id "RvY_11509"; transcript_id "RvY_11509.2"; Scaffold006 rebuild transcript 1455292 1458117 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; gene_name "(1)ARSI_J(2)AslA"; annotation "(1)arylsulfatase I/J [EC:3.1.6.-](2)hypothetical protein."; Pfam "[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "(1)EC3.1.6.-|EC3.1.6.12(2)EC3.1.6.12"; KO "(1)K12375"; similar_genes "ARSB_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold006 rebuild exon 1455292 1455595 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1455659 1455976 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1456058 1456247 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1456314 1456440 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1456494 1456631 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1456695 1456765 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1457048 1457084 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1457170 1457282 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1457518 1457555 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1457669 1457790 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild exon 1457875 1458117 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.1"; Scaffold006 rebuild transcript 1456179 1458117 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; gene_name "(1)ARSI_J(2)AslA"; annotation "(1)arylsulfatase I/J [EC:3.1.6.-](2)hypothetical protein."; Pfam "[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "(1)EC3.1.6.-|EC3.1.6.12(2)EC3.1.6.12"; KO "(1)K12375"; similar_genes "ARSB_HUMAN(e-value:2.8e-15;bit-score:80.0)"; Scaffold006 rebuild exon 1456179 1456247 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1456314 1456631 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1456695 1456765 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1457048 1457084 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1457170 1457282 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1457518 1457555 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1457669 1457790 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild exon 1457875 1458117 . - . gene_id "RvY_11510"; transcript_id "RvY_11510.2"; Scaffold006 rebuild transcript 1459054 1459896 . - . gene_id "RvY_11511"; transcript_id "RvY_11511.1"; gene_name "(1)AslA"; annotation "hypothetical protein."; CDD "(1)Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold006 rebuild exon 1459054 1459488 . - . gene_id "RvY_11511"; transcript_id "RvY_11511.1"; Scaffold006 rebuild exon 1459564 1459896 . - . gene_id "RvY_11511"; transcript_id "RvY_11511.1"; Scaffold006 rebuild transcript 1458659 1459132 . - . gene_id "RvY_11511"; transcript_id "RvY_11511.2"; gene_name "(1)AslA"; annotation "hypothetical protein."; CDD "(1)Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold006 rebuild exon 1458659 1459132 . - . gene_id "RvY_11511"; transcript_id "RvY_11511.2"; Scaffold006 rebuild transcript 1460089 1465000 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; gene_name "STKc_RPK118_like"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[MIT] MIT (microtubule interacting and transport) domain|[PX]"; CDD "STKc_RPK118_like: Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria."; EC "EC2.7.11.1"; similar_genes "RPKL1_PONAB(e-value:2.2e-06;bit-score:50.0)"; Scaffold006 rebuild exon 1460089 1460190 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1460267 1460362 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1460491 1460576 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1460800 1460892 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1460966 1461321 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1461531 1462021 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1462432 1462638 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1463021 1463092 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1463150 1463383 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1463588 1464217 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1464318 1464433 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1464497 1464614 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1464676 1464711 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild exon 1464890 1465000 . - . gene_id "RvY_11512"; transcript_id "RvY_11512.1"; Scaffold006 rebuild transcript 1466069 1468606 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; gene_name "CSNK1A"; annotation "Casein kinase I isoform alpha"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08957"; similar_genes "KC1A_HUMAN(e-value:1.9e-160;bit-score:562.0)"; Scaffold006 rebuild exon 1466069 1466301 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; Scaffold006 rebuild exon 1466886 1467012 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; Scaffold006 rebuild exon 1467327 1467425 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; Scaffold006 rebuild exon 1467622 1467761 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; Scaffold006 rebuild exon 1467833 1467986 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; Scaffold006 rebuild exon 1468373 1468606 . + . gene_id "RvY_11513"; transcript_id "RvY_11513.1"; Scaffold006 rebuild transcript 1469350 1469688 . + . gene_id "RvY_11514"; transcript_id "RvY_11514.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1469350 1469688 . + . gene_id "RvY_11514"; transcript_id "RvY_11514.1"; Scaffold006 rebuild transcript 1472987 1473973 . + . gene_id "RvY_11515"; transcript_id "RvY_11515.1"; gene_name "intradiol_dioxygenase_like"; annotation "hypothetical protein."; CDD "Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown."; Scaffold006 rebuild exon 1472987 1473342 . + . gene_id "RvY_11515"; transcript_id "RvY_11515.1"; Scaffold006 rebuild exon 1473796 1473973 . + . gene_id "RvY_11515"; transcript_id "RvY_11515.1"; Scaffold006 rebuild transcript 1474693 1477934 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1474693 1474836 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1475071 1475348 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1475719 1476054 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1476240 1476444 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1476623 1476738 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1476818 1477010 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1477072 1477406 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild exon 1477685 1477934 . - . gene_id "RvY_11516"; transcript_id "RvY_11516.1"; Scaffold006 rebuild transcript 1478582 1479615 . - . gene_id "RvY_11517"; transcript_id "RvY_11517.1"; gene_name "RHO"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[MMR_HSR1] 50S ribosome-binding GTPase|[Arf] ADP-ribosylation factor family"; CDD "Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms."; similar_genes "CRL1_CANAL(e-value:1.3e-21;bit-score:101.0)"; Scaffold006 rebuild exon 1478582 1478733 . - . gene_id "RvY_11517"; transcript_id "RvY_11517.1"; Scaffold006 rebuild exon 1478802 1478847 . - . gene_id "RvY_11517"; transcript_id "RvY_11517.1"; Scaffold006 rebuild exon 1478906 1479007 . - . gene_id "RvY_11517"; transcript_id "RvY_11517.1"; Scaffold006 rebuild exon 1479075 1479236 . - . gene_id "RvY_11517"; transcript_id "RvY_11517.1"; Scaffold006 rebuild exon 1479376 1479615 . - . gene_id "RvY_11517"; transcript_id "RvY_11517.1"; Scaffold006 rebuild transcript 1480127 1482045 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.1"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; similar_genes "KLDC3_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold006 rebuild exon 1480127 1480500 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.1"; Scaffold006 rebuild exon 1480728 1481153 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.1"; Scaffold006 rebuild exon 1481448 1481820 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.1"; Scaffold006 rebuild exon 1481992 1482045 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.1"; Scaffold006 rebuild transcript 1479992 1482045 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.2"; annotation "hypothetical protein."; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[Kelch_5] Kelch motif|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; similar_genes "KLDC3_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold006 rebuild exon 1479992 1480126 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.2"; Scaffold006 rebuild exon 1480295 1480500 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.2"; Scaffold006 rebuild exon 1480728 1481153 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.2"; Scaffold006 rebuild exon 1481448 1481820 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.2"; Scaffold006 rebuild exon 1481992 1482045 . - . gene_id "RvY_11518"; transcript_id "RvY_11518.2"; Scaffold006 rebuild transcript 1483079 1485008 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; annotation "hypothetical protein."; Pfam "[ERGIC_N] Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)|[COPIIcoated_ERV] Endoplasmic reticulum vesicle transporter"; Scaffold006 rebuild exon 1483079 1483186 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild exon 1483247 1483289 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild exon 1483349 1483504 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild exon 1483673 1483991 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild exon 1484054 1484208 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild exon 1484282 1484436 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild exon 1484718 1485008 . + . gene_id "RvY_11519"; transcript_id "RvY_11519.1"; Scaffold006 rebuild transcript 1485369 1487233 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; annotation "putative Zinc finger protein-like 1 homolog"; Pfam "[zf-RING_2] Ring finger domain"; similar_genes "ZFPL1_DROPS(e-value:1.1e-50;bit-score:197.0)"; Scaffold006 rebuild exon 1485369 1485600 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1485793 1485952 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1486008 1486194 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1486433 1486598 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1486688 1486715 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1486839 1486857 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1486963 1487055 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild exon 1487132 1487233 . - . gene_id "RvY_11520"; transcript_id "RvY_11520.1"; Scaffold006 rebuild transcript 1488204 1490276 . - . gene_id "RvY_11521"; transcript_id "RvY_11521.1"; gene_name "LA"; annotation "hypothetical protein."; Pfam "[La]"; CDD "Domain in the RNA-binding Lupus La protein; unknown function."; similar_genes "LARP1_HUMAN(e-value:5.9e-09;bit-score:59.0)"; Scaffold006 rebuild exon 1488204 1488578 . - . gene_id "RvY_11521"; transcript_id "RvY_11521.1"; Scaffold006 rebuild exon 1488893 1489037 . - . gene_id "RvY_11521"; transcript_id "RvY_11521.1"; Scaffold006 rebuild exon 1489101 1489419 . - . gene_id "RvY_11521"; transcript_id "RvY_11521.1"; Scaffold006 rebuild exon 1489775 1490276 . - . gene_id "RvY_11521"; transcript_id "RvY_11521.1"; Scaffold006 rebuild transcript 1491013 1494129 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; gene_name "MAU2"; annotation "MAternally affected uncoordination"; Pfam "[TPR_12] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat"; KO "K11266"; Scaffold006 rebuild exon 1491013 1491294 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1491590 1491664 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1491736 1491831 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1491908 1492030 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1492267 1492585 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1492701 1492917 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1493100 1493219 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1493299 1493485 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1493677 1493899 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild exon 1493975 1494129 . + . gene_id "RvY_11522"; transcript_id "RvY_11522.1"; Scaffold006 rebuild transcript 1497509 1501813 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold006 rebuild exon 1497509 1497733 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; Scaffold006 rebuild exon 1498124 1498472 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; Scaffold006 rebuild exon 1498608 1498960 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; Scaffold006 rebuild exon 1499264 1500007 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; Scaffold006 rebuild exon 1500458 1500650 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; Scaffold006 rebuild exon 1500756 1501813 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.1"; Scaffold006 rebuild transcript 1497509 1501813 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold006 rebuild exon 1497509 1497733 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild exon 1498124 1498472 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild exon 1498608 1498960 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild exon 1499264 1500007 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild exon 1500458 1500650 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild exon 1500756 1501135 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild exon 1501190 1501813 . + . gene_id "RvY_11523"; transcript_id "RvY_11523.2"; Scaffold006 rebuild transcript 1504772 1510075 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; gene_name "CDC_Septin"; annotation "putative Septin-11"; Pfam "[Septin]"; CDD "CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities."; similar_genes "SEP11_BOVIN(e-value:5.2e-27;bit-score:119.0)"; Scaffold006 rebuild exon 1504772 1504778 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1504910 1505070 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1505141 1505430 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1505978 1506074 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1506450 1506539 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1506681 1506798 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1507324 1507464 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1507596 1507677 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1508079 1508192 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1508671 1508815 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1508872 1509014 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1509083 1509229 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1509315 1509525 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1509639 1509788 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild exon 1509893 1510075 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.1"; Scaffold006 rebuild transcript 1504906 1510075 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; gene_name "CDC_Septin"; annotation "putative Septin-11"; Pfam "[Septin]"; CDD "CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities."; similar_genes "SEP11_BOVIN(e-value:5.2e-27;bit-score:119.0)"; Scaffold006 rebuild exon 1504906 1505070 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1505141 1505430 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1505978 1506074 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1506450 1506539 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1506681 1506798 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1507324 1507464 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1507596 1507677 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1508079 1508192 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1508671 1508815 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1508872 1509014 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1509083 1509229 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1509315 1509525 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1509639 1509788 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild exon 1509893 1510075 . - . gene_id "RvY_11524"; transcript_id "RvY_11524.2"; Scaffold006 rebuild transcript 1511773 1515736 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; gene_name "(1)GUCY1A"; annotation "Guanylate cyclase soluble subunit alpha-2"; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; KO "(1)K12318"; similar_genes "GCYA2_HUMAN(e-value:1.0e-63;bit-score:241.0)"; Scaffold006 rebuild exon 1511773 1511937 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1512338 1512408 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1512481 1512593 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1513108 1513622 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1513711 1514281 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1514419 1514609 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1514695 1514841 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1515100 1515132 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1515190 1515232 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1515344 1515422 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild exon 1515538 1515736 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.1"; Scaffold006 rebuild transcript 1511773 1514859 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; gene_name "(1)GUCY1A"; annotation "Guanylate cyclase soluble subunit alpha-2"; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; KO "(1)K12318"; similar_genes "GCYA2_HUMAN(e-value:1.0e-63;bit-score:241.0)"; Scaffold006 rebuild exon 1511773 1511937 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild exon 1512338 1512408 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild exon 1512481 1512593 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild exon 1513108 1513622 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild exon 1513711 1514281 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild exon 1514419 1514609 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild exon 1514695 1514859 . + . gene_id "RvY_11525"; transcript_id "RvY_11525.2"; Scaffold006 rebuild transcript 1517141 1522127 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; gene_name "GUCY1B"; annotation "putative Guanylate cyclase soluble subunit beta-1"; Pfam "[HNOBA] Heme NO binding associated|[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; EC "EC4.6.1.2"; KO "K12319"; similar_genes "GCYB1_MOUSE(e-value:1.0e-46;bit-score:184.0)"; Scaffold006 rebuild exon 1517141 1517143 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1517476 1517549 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1519748 1519848 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1519967 1520491 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1520685 1521415 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1521492 1521632 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1521709 1521863 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild exon 1521956 1522127 . + . gene_id "RvY_11526"; transcript_id "RvY_11526.1"; Scaffold006 rebuild transcript 1524225 1524725 . - . gene_id "RvY_11527"; transcript_id "RvY_11527.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1524225 1524233 . - . gene_id "RvY_11527"; transcript_id "RvY_11527.1"; Scaffold006 rebuild exon 1524332 1524467 . - . gene_id "RvY_11527"; transcript_id "RvY_11527.1"; Scaffold006 rebuild exon 1524526 1524725 . - . gene_id "RvY_11527"; transcript_id "RvY_11527.1"; Scaffold006 rebuild transcript 1529434 1529685 . - . gene_id "RvY_11528"; transcript_id "RvY_11528.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1529434 1529685 . - . gene_id "RvY_11528"; transcript_id "RvY_11528.1"; Scaffold006 rebuild transcript 1533554 1533748 . - . gene_id "RvY_11529"; transcript_id "RvY_11529.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1533554 1533748 . - . gene_id "RvY_11529"; transcript_id "RvY_11529.1"; Scaffold006 rebuild transcript 1539880 1544288 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; annotation "hypothetical protein."; Pfam "[Rab5-bind] Rabaptin-like protein|[FYVE] FYVE zinc finger"; similar_genes "RABE1_RAT(e-value:5.1e-06;bit-score:49.0)"; Scaffold006 rebuild exon 1539880 1540044 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1540109 1540240 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1540460 1540743 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1541139 1541448 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1541820 1541918 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1542163 1542384 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1542455 1542687 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1542764 1542941 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1543006 1543412 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1543472 1543675 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1543906 1544130 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild exon 1544201 1544288 . - . gene_id "RvY_11530"; transcript_id "RvY_11530.1"; Scaffold006 rebuild transcript 1544727 1545489 . + . gene_id "RvY_11531"; transcript_id "RvY_11531.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1544727 1545145 . + . gene_id "RvY_11531"; transcript_id "RvY_11531.1"; Scaffold006 rebuild exon 1545342 1545489 . + . gene_id "RvY_11531"; transcript_id "RvY_11531.1"; Scaffold006 rebuild transcript 1545519 1546994 . + . gene_id "RvY_11532"; transcript_id "RvY_11532.1"; annotation "hypothetical protein."; Pfam "[zf-SNAP50_C] snRNA-activating protein of 50kDa MW C terminal"; KO "K15210"; Scaffold006 rebuild exon 1545519 1545602 . + . gene_id "RvY_11532"; transcript_id "RvY_11532.1"; Scaffold006 rebuild exon 1545659 1545889 . + . gene_id "RvY_11532"; transcript_id "RvY_11532.1"; Scaffold006 rebuild exon 1545997 1546079 . + . gene_id "RvY_11532"; transcript_id "RvY_11532.1"; Scaffold006 rebuild exon 1546427 1546708 . + . gene_id "RvY_11532"; transcript_id "RvY_11532.1"; Scaffold006 rebuild exon 1546775 1546994 . + . gene_id "RvY_11532"; transcript_id "RvY_11532.1"; Scaffold006 rebuild transcript 1550099 1551102 . + . gene_id "RvY_11533"; transcript_id "RvY_11533.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1550099 1550166 . + . gene_id "RvY_11533"; transcript_id "RvY_11533.1"; Scaffold006 rebuild exon 1550245 1550501 . + . gene_id "RvY_11533"; transcript_id "RvY_11533.1"; Scaffold006 rebuild exon 1551044 1551102 . + . gene_id "RvY_11533"; transcript_id "RvY_11533.1"; Scaffold006 rebuild transcript 1551984 1553247 . + . gene_id "RvY_11534"; transcript_id "RvY_11534.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1551984 1552290 . + . gene_id "RvY_11534"; transcript_id "RvY_11534.1"; Scaffold006 rebuild exon 1553165 1553247 . + . gene_id "RvY_11534"; transcript_id "RvY_11534.1"; Scaffold006 rebuild transcript 1552083 1556557 . - . gene_id "RvY_11535"; transcript_id "RvY_11535.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1552083 1552309 . - . gene_id "RvY_11535"; transcript_id "RvY_11535.1"; Scaffold006 rebuild exon 1556524 1556557 . - . gene_id "RvY_11535"; transcript_id "RvY_11535.1"; Scaffold006 rebuild transcript 1553692 1556136 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1553692 1553746 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; Scaffold006 rebuild exon 1553837 1554324 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; Scaffold006 rebuild exon 1554695 1554913 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; Scaffold006 rebuild exon 1555017 1555211 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; Scaffold006 rebuild exon 1555232 1555841 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; Scaffold006 rebuild exon 1555967 1556136 . + . gene_id "RvY_11536"; transcript_id "RvY_11536.1"; Scaffold006 rebuild transcript 1559074 1559394 . + . gene_id "RvY_11537"; transcript_id "RvY_11537.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 1559074 1559394 . + . gene_id "RvY_11537"; transcript_id "RvY_11537.1"; Scaffold006 rebuild transcript 1561621 1562507 . - . gene_id "RvY_11538"; transcript_id "RvY_11538.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1561621 1561638 . - . gene_id "RvY_11538"; transcript_id "RvY_11538.1"; Scaffold006 rebuild exon 1561783 1562049 . - . gene_id "RvY_11538"; transcript_id "RvY_11538.1"; Scaffold006 rebuild exon 1562133 1562507 . - . gene_id "RvY_11538"; transcript_id "RvY_11538.1"; Scaffold006 rebuild transcript 1561992 1562507 . - . gene_id "RvY_11538"; transcript_id "RvY_11538.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1561992 1562507 . - . gene_id "RvY_11538"; transcript_id "RvY_11538.2"; Scaffold006 rebuild transcript 1562843 1563514 . - . gene_id "RvY_11539"; transcript_id "RvY_11539.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1562843 1563022 . - . gene_id "RvY_11539"; transcript_id "RvY_11539.1"; Scaffold006 rebuild exon 1563287 1563514 . - . gene_id "RvY_11539"; transcript_id "RvY_11539.1"; Scaffold006 rebuild transcript 1562520 1562969 . - . gene_id "RvY_11539"; transcript_id "RvY_11539.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1562520 1562608 . - . gene_id "RvY_11539"; transcript_id "RvY_11539.2"; Scaffold006 rebuild exon 1562690 1562969 . - . gene_id "RvY_11539"; transcript_id "RvY_11539.2"; Scaffold006 rebuild transcript 1566745 1568443 . - . gene_id "RvY_11540"; transcript_id "RvY_11540.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1566745 1567512 . - . gene_id "RvY_11540"; transcript_id "RvY_11540.1"; Scaffold006 rebuild exon 1568378 1568443 . - . gene_id "RvY_11540"; transcript_id "RvY_11540.1"; Scaffold006 rebuild transcript 1568636 1568794 . - . gene_id "RvY_11541"; transcript_id "RvY_11541.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1568636 1568794 . - . gene_id "RvY_11541"; transcript_id "RvY_11541.1"; Scaffold006 rebuild transcript 1569357 1569937 . + . gene_id "RvY_11542"; transcript_id "RvY_11542.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1569357 1569433 . + . gene_id "RvY_11542"; transcript_id "RvY_11542.1"; Scaffold006 rebuild exon 1569499 1569937 . + . gene_id "RvY_11542"; transcript_id "RvY_11542.1"; Scaffold006 rebuild transcript 1570911 1574356 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; annotation "putative Calcium-activated potassium channel slowpoke"; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|(1)[TrkA_N] TrkA-N domain"; similar_genes "SLO_DROME(e-value:1.8e-33;bit-score:140.0)"; Scaffold006 rebuild exon 1570911 1570966 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1571033 1571405 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1571495 1571659 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1571745 1571851 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1572398 1572553 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1572647 1572720 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1572787 1572928 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1573030 1573138 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1573219 1573443 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1573538 1573742 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1573831 1573914 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild exon 1573995 1574356 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.1"; Scaffold006 rebuild transcript 1570001 1572932 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; annotation "putative Calcium-activated potassium channel slowpoke"; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|(1)[TrkA_N] TrkA-N domain"; similar_genes "SLO_DROME(e-value:1.8e-33;bit-score:140.0)"; Scaffold006 rebuild exon 1570001 1570135 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1570226 1570340 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1570416 1570708 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1570764 1570805 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1570872 1570966 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1571033 1571405 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1571495 1571659 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1571745 1571851 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1572647 1572720 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild exon 1572787 1572932 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.2"; Scaffold006 rebuild transcript 1570067 1572932 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; annotation "putative Calcium-activated potassium channel slowpoke"; Pfam "[BK_channel_a] Calcium-activated BK potassium channel alpha subunit|(1)[TrkA_N] TrkA-N domain"; similar_genes "SLO_DROME(e-value:1.8e-33;bit-score:140.0)"; Scaffold006 rebuild exon 1570067 1570135 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1570226 1570340 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1570416 1570708 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1570764 1570805 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1570872 1570966 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1571033 1571405 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1571495 1571659 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1571745 1571851 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1572647 1572720 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild exon 1572787 1572932 . + . gene_id "RvY_11543"; transcript_id "RvY_11543.3"; Scaffold006 rebuild transcript 1576091 1577753 . - . gene_id "RvY_11544"; transcript_id "RvY_11544.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; Scaffold006 rebuild exon 1576091 1577030 . - . gene_id "RvY_11544"; transcript_id "RvY_11544.1"; Scaffold006 rebuild exon 1577107 1577753 . - . gene_id "RvY_11544"; transcript_id "RvY_11544.1"; Scaffold006 rebuild transcript 1579415 1579947 . - . gene_id "RvY_11545"; transcript_id "RvY_11545.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1579415 1579540 . - . gene_id "RvY_11545"; transcript_id "RvY_11545.1"; Scaffold006 rebuild exon 1579609 1579947 . - . gene_id "RvY_11545"; transcript_id "RvY_11545.1"; Scaffold006 rebuild transcript 1580402 1581430 . + . gene_id "RvY_11546"; transcript_id "RvY_11546.1"; annotation "hypothetical protein."; Pfam "[CAP_GLY] CAP-Gly domain"; Scaffold006 rebuild exon 1580402 1580816 . + . gene_id "RvY_11546"; transcript_id "RvY_11546.1"; Scaffold006 rebuild exon 1580898 1581283 . + . gene_id "RvY_11546"; transcript_id "RvY_11546.1"; Scaffold006 rebuild exon 1581356 1581430 . + . gene_id "RvY_11546"; transcript_id "RvY_11546.1"; Scaffold006 rebuild transcript 1582572 1582796 . + . gene_id "RvY_11547"; transcript_id "RvY_11547.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)"; Scaffold006 rebuild exon 1582572 1582796 . + . gene_id "RvY_11547"; transcript_id "RvY_11547.1"; Scaffold006 rebuild transcript 1583644 1583958 . + . gene_id "RvY_11548"; transcript_id "RvY_11548.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold006 rebuild exon 1583644 1583958 . + . gene_id "RvY_11548"; transcript_id "RvY_11548.1"; Scaffold006 rebuild transcript 1584200 1584544 . - . gene_id "RvY_11549"; transcript_id "RvY_11549.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1584200 1584544 . - . gene_id "RvY_11549"; transcript_id "RvY_11549.1"; Scaffold006 rebuild transcript 1585352 1585534 . - . gene_id "RvY_11550"; transcript_id "RvY_11550.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1585352 1585534 . - . gene_id "RvY_11550"; transcript_id "RvY_11550.1"; Scaffold006 rebuild transcript 1585882 1586133 . + . gene_id "RvY_11551"; transcript_id "RvY_11551.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1585882 1586133 . + . gene_id "RvY_11551"; transcript_id "RvY_11551.1"; Scaffold006 rebuild transcript 1587890 1588129 . + . gene_id "RvY_11552"; transcript_id "RvY_11552.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1587890 1588129 . + . gene_id "RvY_11552"; transcript_id "RvY_11552.1"; Scaffold006 rebuild transcript 1588458 1588964 . - . gene_id "RvY_11553"; transcript_id "RvY_11553.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1588458 1588964 . - . gene_id "RvY_11553"; transcript_id "RvY_11553.1"; Scaffold006 rebuild transcript 1589411 1590005 . - . gene_id "RvY_11554"; transcript_id "RvY_11554.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1589411 1589820 . - . gene_id "RvY_11554"; transcript_id "RvY_11554.1"; Scaffold006 rebuild exon 1589888 1590005 . - . gene_id "RvY_11554"; transcript_id "RvY_11554.1"; Scaffold006 rebuild transcript 1592719 1594797 . - . gene_id "RvY_11555"; transcript_id "RvY_11555.1"; gene_name "APEX2"; annotation "AP endonuclease 2 [EC:4.2.99.18]"; Pfam "[zf-GRF] GRF zinc finger|[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC4.2.99.18"; KO "K10772"; similar_genes "APEX2_MOUSE(e-value:4.3e-20;bit-score:96.0)"; Scaffold006 rebuild exon 1592719 1593895 . - . gene_id "RvY_11555"; transcript_id "RvY_11555.1"; Scaffold006 rebuild exon 1594247 1594797 . - . gene_id "RvY_11555"; transcript_id "RvY_11555.1"; Scaffold006 rebuild transcript 1595684 1596795 . + . gene_id "RvY_11556"; transcript_id "RvY_11556.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1595684 1595864 . + . gene_id "RvY_11556"; transcript_id "RvY_11556.1"; Scaffold006 rebuild exon 1596125 1596795 . + . gene_id "RvY_11556"; transcript_id "RvY_11556.1"; Scaffold006 rebuild transcript 1597054 1598486 . - . gene_id "RvY_11557"; transcript_id "RvY_11557.1"; annotation "hypothetical protein."; Pfam "[Plant_tran] Plant transposon protein|[DDE_4] DDE superfamily endonuclease"; Scaffold006 rebuild exon 1597054 1597653 . - . gene_id "RvY_11557"; transcript_id "RvY_11557.1"; Scaffold006 rebuild exon 1598007 1598486 . - . gene_id "RvY_11557"; transcript_id "RvY_11557.1"; Scaffold006 rebuild transcript 1600411 1602585 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; gene_name "ACTIN"; annotation "hypothetical protein."; Pfam "[Actin]"; CDD "Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily"; Scaffold006 rebuild exon 1600411 1600487 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1600568 1600637 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1600762 1600844 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1600901 1601188 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1601275 1601387 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1601477 1601554 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1601620 1601687 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1601782 1601870 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1601947 1602233 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild exon 1602440 1602585 . + . gene_id "RvY_11558"; transcript_id "RvY_11558.1"; Scaffold006 rebuild transcript 1603908 1604522 . - . gene_id "RvY_11559"; transcript_id "RvY_11559.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1603908 1604216 . - . gene_id "RvY_11559"; transcript_id "RvY_11559.1"; Scaffold006 rebuild exon 1604376 1604522 . - . gene_id "RvY_11559"; transcript_id "RvY_11559.1"; Scaffold006 rebuild transcript 1605058 1606474 . + . gene_id "RvY_11560"; transcript_id "RvY_11560.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1605058 1605190 . + . gene_id "RvY_11560"; transcript_id "RvY_11560.1"; Scaffold006 rebuild exon 1605614 1605900 . + . gene_id "RvY_11560"; transcript_id "RvY_11560.1"; Scaffold006 rebuild exon 1606217 1606474 . + . gene_id "RvY_11560"; transcript_id "RvY_11560.1"; Scaffold006 rebuild transcript 1606524 1606829 . + . gene_id "RvY_11561"; transcript_id "RvY_11561.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1606524 1606829 . + . gene_id "RvY_11561"; transcript_id "RvY_11561.1"; Scaffold006 rebuild transcript 1610719 1611209 . + . gene_id "RvY_11562"; transcript_id "RvY_11562.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1610719 1610874 . + . gene_id "RvY_11562"; transcript_id "RvY_11562.1"; Scaffold006 rebuild exon 1611012 1611209 . + . gene_id "RvY_11562"; transcript_id "RvY_11562.1"; Scaffold006 rebuild transcript 1613392 1613685 . + . gene_id "RvY_11563"; transcript_id "RvY_11563.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1613392 1613685 . + . gene_id "RvY_11563"; transcript_id "RvY_11563.1"; Scaffold006 rebuild transcript 1613921 1617056 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "PHX2A_RAT(e-value:2.9e-06;bit-score:50.0)"; Scaffold006 rebuild exon 1613921 1614177 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.1"; Scaffold006 rebuild exon 1615975 1616257 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.1"; Scaffold006 rebuild exon 1617024 1617056 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.1"; Scaffold006 rebuild transcript 1615865 1617056 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.2"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "PHX2A_RAT(e-value:2.9e-06;bit-score:50.0)"; Scaffold006 rebuild exon 1615865 1616257 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.2"; Scaffold006 rebuild exon 1617024 1617056 . - . gene_id "RvY_11564"; transcript_id "RvY_11564.2"; Scaffold006 rebuild transcript 1619487 1621093 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; gene_name "SRM"; annotation "Spermidine synthase"; Pfam "[Spermine_synth] Spermine/spermidine synthase"; CDD "spermidine synthase; Provisional"; EC "EC2.5.1.16"; KO "K00797"; similar_genes "SPEE_DICDI(e-value:4.4e-75;bit-score:278.0)"; Scaffold006 rebuild exon 1619487 1619624 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; Scaffold006 rebuild exon 1619800 1619945 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; Scaffold006 rebuild exon 1620226 1620309 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; Scaffold006 rebuild exon 1620381 1620627 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; Scaffold006 rebuild exon 1620693 1620813 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; Scaffold006 rebuild exon 1620876 1621093 . - . gene_id "RvY_11565"; transcript_id "RvY_11565.1"; Scaffold006 rebuild transcript 1621044 1621489 . + . gene_id "RvY_11566"; transcript_id "RvY_11566.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1621044 1621118 . + . gene_id "RvY_11566"; transcript_id "RvY_11566.1"; Scaffold006 rebuild exon 1621301 1621489 . + . gene_id "RvY_11566"; transcript_id "RvY_11566.1"; Scaffold006 rebuild transcript 1622221 1623921 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; gene_name "CAPZB"; annotation "F-actin-capping protein subunit beta"; Pfam "[F_actin_cap_B] F-actin capping protein, beta subunit"; KO "K10365"; similar_genes "CAPZB_DROME(e-value:6.5e-125;bit-score:444.0)"; Scaffold006 rebuild exon 1622221 1622400 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; Scaffold006 rebuild exon 1622858 1622923 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; Scaffold006 rebuild exon 1622989 1623361 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; Scaffold006 rebuild exon 1623509 1623630 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; Scaffold006 rebuild exon 1623715 1623804 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; Scaffold006 rebuild exon 1623916 1623921 . - . gene_id "RvY_11567"; transcript_id "RvY_11567.1"; Scaffold006 rebuild transcript 1624904 1629173 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; gene_name "APKC"; annotation "Protein kinase C iota type"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[PB1]|[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes."; EC "EC2.7.11.13"; KO "K06069"; similar_genes "KPCI_HUMAN(e-value:3.7e-70;bit-score:262.0)"; Scaffold006 rebuild exon 1624904 1624971 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1625044 1625165 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1625229 1625318 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1625397 1625447 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1625535 1625620 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1625862 1626002 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1626077 1626200 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1626297 1626388 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1626808 1626978 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1627255 1627352 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1627414 1627550 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1627657 1627742 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1627833 1627938 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1628034 1628159 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1628372 1628451 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1628515 1628601 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1628804 1628943 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild exon 1629086 1629173 . + . gene_id "RvY_11568"; transcript_id "RvY_11568.1"; Scaffold006 rebuild transcript 1635827 1647345 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; annotation "putative Transforming protein Ski"; Pfam "[c-SKI_SMAD_bind] c-SKI Smad4 binding domain|[Ski_Sno] SKI/SNO/DAC family"; similar_genes "SKI_AVIES(e-value:1.3e-27;bit-score:121.0)"; Scaffold006 rebuild exon 1635827 1635924 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1635990 1636429 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1636683 1637137 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1645921 1646108 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1646387 1646509 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1646596 1646864 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1646928 1647094 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild exon 1647304 1647345 . + . gene_id "RvY_11569"; transcript_id "RvY_11569.1"; Scaffold006 rebuild transcript 1639028 1639393 . - . gene_id "RvY_11570"; transcript_id "RvY_11570.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1639028 1639393 . - . gene_id "RvY_11570"; transcript_id "RvY_11570.1"; Scaffold006 rebuild transcript 1648208 1648558 . - . gene_id "RvY_11571"; transcript_id "RvY_11571.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1648208 1648558 . - . gene_id "RvY_11571"; transcript_id "RvY_11571.1"; Scaffold006 rebuild transcript 1648730 1649074 . - . gene_id "RvY_11572"; transcript_id "RvY_11572.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1648730 1649074 . - . gene_id "RvY_11572"; transcript_id "RvY_11572.1"; Scaffold006 rebuild transcript 1649118 1649330 . - . gene_id "RvY_11573"; transcript_id "RvY_11573.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1649118 1649330 . - . gene_id "RvY_11573"; transcript_id "RvY_11573.1"; Scaffold006 rebuild transcript 1649386 1650117 . + . gene_id "RvY_11574"; transcript_id "RvY_11574.1"; gene_name "tauD"; annotation "putative Alpha-ketoglutarate-dependent taurine dioxygenase"; Pfam "[TauD] Taurine catabolism dioxygenase TauD, TfdA family"; CDD "taurine dioxygenase; Reviewed"; EC "EC1.14.11.17"; similar_genes "TAUD_ECOLI(e-value:2.3e-27;bit-score:120.0)"; Scaffold006 rebuild exon 1649386 1649454 . + . gene_id "RvY_11574"; transcript_id "RvY_11574.1"; Scaffold006 rebuild exon 1649534 1649740 . + . gene_id "RvY_11574"; transcript_id "RvY_11574.1"; Scaffold006 rebuild exon 1649821 1650117 . + . gene_id "RvY_11574"; transcript_id "RvY_11574.1"; Scaffold006 rebuild transcript 1650306 1650554 . + . gene_id "RvY_11575"; transcript_id "RvY_11575.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1650306 1650554 . + . gene_id "RvY_11575"; transcript_id "RvY_11575.1"; Scaffold006 rebuild transcript 1652665 1655452 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1652665 1652725 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1652804 1653570 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1653647 1653802 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1653948 1654057 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1654319 1654643 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1654841 1655011 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1655081 1655237 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild exon 1655328 1655452 . - . gene_id "RvY_11576"; transcript_id "RvY_11576.1"; Scaffold006 rebuild transcript 1657044 1657414 . + . gene_id "RvY_11577"; transcript_id "RvY_11577.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1657044 1657144 . + . gene_id "RvY_11577"; transcript_id "RvY_11577.1"; Scaffold006 rebuild exon 1657249 1657414 . + . gene_id "RvY_11577"; transcript_id "RvY_11577.1"; Scaffold006 rebuild transcript 1664153 1664977 . + . gene_id "RvY_11578"; transcript_id "RvY_11578.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 1664153 1664977 . + . gene_id "RvY_11578"; transcript_id "RvY_11578.1"; Scaffold006 rebuild transcript 1665371 1665736 . + . gene_id "RvY_11579"; transcript_id "RvY_11579.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1665371 1665736 . + . gene_id "RvY_11579"; transcript_id "RvY_11579.1"; Scaffold006 rebuild transcript 1666818 1667237 . - . gene_id "RvY_11580"; transcript_id "RvY_11580.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1666818 1667237 . - . gene_id "RvY_11580"; transcript_id "RvY_11580.1"; Scaffold006 rebuild transcript 1669683 1670645 . + . gene_id "RvY_11581"; transcript_id "RvY_11581.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold006 rebuild exon 1669683 1669879 . + . gene_id "RvY_11581"; transcript_id "RvY_11581.1"; Scaffold006 rebuild exon 1670042 1670645 . + . gene_id "RvY_11581"; transcript_id "RvY_11581.1"; Scaffold006 rebuild transcript 1670969 1673465 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.1"; gene_name "ITPK"; annotation "putative Inositol-trisphosphate 3-kinase C"; Pfam "[IPK] Inositol polyphosphate kinase"; EC "EC2.7.1.127"; KO "K00911"; similar_genes "IP3KC_RAT(e-value:2.5e-35;bit-score:146.0)"; Scaffold006 rebuild exon 1670969 1671274 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.1"; Scaffold006 rebuild exon 1671342 1671443 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.1"; Scaffold006 rebuild exon 1671517 1671666 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.1"; Scaffold006 rebuild exon 1671948 1672313 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.1"; Scaffold006 rebuild exon 1672737 1673465 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.1"; Scaffold006 rebuild transcript 1670969 1673657 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; gene_name "ITPK"; annotation "putative Inositol-trisphosphate 3-kinase C"; Pfam "[IPK] Inositol polyphosphate kinase"; EC "EC2.7.1.127"; KO "K00911"; similar_genes "IP3KC_RAT(e-value:2.5e-35;bit-score:146.0)"; Scaffold006 rebuild exon 1670969 1671274 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; Scaffold006 rebuild exon 1671342 1671443 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; Scaffold006 rebuild exon 1671517 1671666 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; Scaffold006 rebuild exon 1671948 1672313 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; Scaffold006 rebuild exon 1672737 1673314 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; Scaffold006 rebuild exon 1673636 1673657 . - . gene_id "RvY_11582"; transcript_id "RvY_11582.2"; Scaffold006 rebuild transcript 1676412 1676618 . + . gene_id "RvY_11583"; transcript_id "RvY_11583.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1676412 1676618 . + . gene_id "RvY_11583"; transcript_id "RvY_11583.1"; Scaffold006 rebuild transcript 1678053 1678301 . - . gene_id "RvY_11584"; transcript_id "RvY_11584.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1678053 1678301 . - . gene_id "RvY_11584"; transcript_id "RvY_11584.1"; Scaffold006 rebuild transcript 1678543 1680718 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold006 rebuild exon 1678543 1678630 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1678711 1679038 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1679117 1679207 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1679286 1679498 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1679709 1679947 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1680062 1680139 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1680214 1680274 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild exon 1680362 1680718 . - . gene_id "RvY_11585"; transcript_id "RvY_11585.1"; Scaffold006 rebuild transcript 1681663 1682908 . + . gene_id "RvY_11586"; transcript_id "RvY_11586.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1681663 1681684 . + . gene_id "RvY_11586"; transcript_id "RvY_11586.1"; Scaffold006 rebuild exon 1682128 1682292 . + . gene_id "RvY_11586"; transcript_id "RvY_11586.1"; Scaffold006 rebuild exon 1682355 1682908 . + . gene_id "RvY_11586"; transcript_id "RvY_11586.1"; Scaffold006 rebuild transcript 1684342 1685185 . - . gene_id "RvY_11587"; transcript_id "RvY_11587.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1684342 1684547 . - . gene_id "RvY_11587"; transcript_id "RvY_11587.1"; Scaffold006 rebuild exon 1685122 1685185 . - . gene_id "RvY_11587"; transcript_id "RvY_11587.1"; Scaffold006 rebuild transcript 1688163 1688486 . - . gene_id "RvY_11588"; transcript_id "RvY_11588.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1688163 1688486 . - . gene_id "RvY_11588"; transcript_id "RvY_11588.1"; Scaffold006 rebuild transcript 1691526 1694232 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; gene_name "COG4886"; annotation "Leucine-rich repeat protein SHOC-2"; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "SHOC2_BOVIN(e-value:9.5e-88;bit-score:321.0)"; Scaffold006 rebuild exon 1691526 1691546 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1692287 1692547 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1692697 1692843 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1692909 1693007 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1693069 1693254 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1693369 1693464 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1693529 1693758 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild exon 1694001 1694232 . + . gene_id "RvY_11589"; transcript_id "RvY_11589.1"; Scaffold006 rebuild transcript 1694458 1695715 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; gene_name "COG4886"; annotation "Leucine-rich repeat protein SHOC-2"; Pfam "[LRR_8] Leucine rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "SHOC2_BOVIN(e-value:2.6e-77;bit-score:286.0)"; Scaffold006 rebuild exon 1694458 1694563 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; Scaffold006 rebuild exon 1694644 1694768 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; Scaffold006 rebuild exon 1694847 1694934 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; Scaffold006 rebuild exon 1695006 1695143 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; Scaffold006 rebuild exon 1695239 1695408 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; Scaffold006 rebuild exon 1695665 1695715 . + . gene_id "RvY_11590"; transcript_id "RvY_11590.1"; Scaffold006 rebuild transcript 1696083 1696670 . - . gene_id "RvY_11591"; transcript_id "RvY_11591.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1696083 1696249 . - . gene_id "RvY_11591"; transcript_id "RvY_11591.1"; Scaffold006 rebuild exon 1696439 1696670 . - . gene_id "RvY_11591"; transcript_id "RvY_11591.1"; Scaffold006 rebuild transcript 1697377 1700390 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; gene_name "CDS1"; annotation "Phosphatidate cytidylyltransferase, photoreceptor-specific"; Pfam "[CTP_transf_1] Cytidylyltransferase family"; CDD "Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108."; EC "EC2.7.7.41"; KO "K00981"; similar_genes "CDSA_DROME(e-value:6.4e-53;bit-score:205.0)"; Scaffold006 rebuild exon 1697377 1697448 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1698023 1698156 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1698226 1698322 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1698560 1698736 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1698827 1698946 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1699224 1699463 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1699528 1699671 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1699924 1700052 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild exon 1700127 1700390 . + . gene_id "RvY_11592"; transcript_id "RvY_11592.1"; Scaffold006 rebuild transcript 1701015 1702410 . - . gene_id "RvY_11593"; transcript_id "RvY_11593.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1701015 1701239 . - . gene_id "RvY_11593"; transcript_id "RvY_11593.1"; Scaffold006 rebuild exon 1702279 1702410 . - . gene_id "RvY_11593"; transcript_id "RvY_11593.1"; Scaffold006 rebuild transcript 1704417 1707986 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; gene_name "(1,2)LIC(3)CHRNA7"; annotation "putative Neuronal acetylcholine receptor subunit alpha-7"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(3)K04809"; similar_genes "ACHA7_MOUSE(e-value:2.0e-43;bit-score:173.0)"; Scaffold006 rebuild exon 1704417 1704632 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1704970 1705287 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1705355 1705464 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1705733 1705819 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1705895 1706036 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1706118 1706170 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1706248 1706350 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1706433 1706583 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1706767 1706876 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1706972 1707015 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1707121 1707270 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild exon 1707935 1707986 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.1"; Scaffold006 rebuild transcript 1704417 1707986 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; gene_name "(1,2)LIC(3)CHRNA7"; annotation "putative Neuronal acetylcholine receptor subunit alpha-7"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(3)K04809"; similar_genes "ACHA7_MOUSE(e-value:2.0e-43;bit-score:173.0)"; Scaffold006 rebuild exon 1704417 1704626 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1704970 1705287 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1705355 1705464 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1705733 1705819 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1705895 1706036 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1706118 1706170 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1706248 1706350 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1706433 1706583 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1706767 1706876 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1706972 1707015 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1707121 1707270 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild exon 1707935 1707986 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.2"; Scaffold006 rebuild transcript 1704417 1707199 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; gene_name "(1,2)LIC(3)CHRNA7"; annotation "putative Neuronal acetylcholine receptor subunit alpha-7"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "(3)K04809"; similar_genes "ACHA7_MOUSE(e-value:2.0e-43;bit-score:173.0)"; Scaffold006 rebuild exon 1704417 1704632 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1704970 1705287 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1705355 1705464 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1705733 1705819 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1705895 1706036 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1706118 1706170 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1706248 1706350 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1706433 1706583 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1706767 1706876 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1706972 1707015 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild exon 1707121 1707199 . - . gene_id "RvY_11594"; transcript_id "RvY_11594.3"; Scaffold006 rebuild transcript 1708680 1710356 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.1"; gene_name "LGALS8"; annotation "galectin-8"; Pfam "[Gal-bind_lectin] Galactoside-binding lectin"; KO "K06832"; Scaffold006 rebuild exon 1708680 1709066 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.1"; Scaffold006 rebuild exon 1709156 1709365 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.1"; Scaffold006 rebuild exon 1709438 1709572 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.1"; Scaffold006 rebuild exon 1709766 1710068 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.1"; Scaffold006 rebuild exon 1710330 1710356 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.1"; Scaffold006 rebuild transcript 1708680 1710020 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.2"; gene_name "LGALS8"; annotation "galectin-8"; Pfam "[Gal-bind_lectin] Galactoside-binding lectin"; KO "K06832"; Scaffold006 rebuild exon 1708680 1709066 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.2"; Scaffold006 rebuild exon 1709156 1709365 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.2"; Scaffold006 rebuild exon 1709438 1709572 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.2"; Scaffold006 rebuild exon 1709766 1710020 . - . gene_id "RvY_11595"; transcript_id "RvY_11595.2"; Scaffold006 rebuild transcript 1712778 1713759 . - . gene_id "RvY_11596"; transcript_id "RvY_11596.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold006 rebuild exon 1712778 1713192 . - . gene_id "RvY_11596"; transcript_id "RvY_11596.1"; Scaffold006 rebuild exon 1713449 1713759 . - . gene_id "RvY_11596"; transcript_id "RvY_11596.1"; Scaffold006 rebuild transcript 1714182 1714637 . + . gene_id "RvY_11597"; transcript_id "RvY_11597.1"; gene_name "PRK08279"; annotation "hypothetical protein."; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "acyl-CoA synthetase; Validated"; Scaffold006 rebuild exon 1714182 1714637 . + . gene_id "RvY_11597"; transcript_id "RvY_11597.1"; Scaffold006 rebuild transcript 1714685 1715990 . + . gene_id "RvY_11598"; transcript_id "RvY_11598.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1714685 1714729 . + . gene_id "RvY_11598"; transcript_id "RvY_11598.1"; Scaffold006 rebuild exon 1714789 1714960 . + . gene_id "RvY_11598"; transcript_id "RvY_11598.1"; Scaffold006 rebuild exon 1715029 1715094 . + . gene_id "RvY_11598"; transcript_id "RvY_11598.1"; Scaffold006 rebuild exon 1715499 1715767 . + . gene_id "RvY_11598"; transcript_id "RvY_11598.1"; Scaffold006 rebuild exon 1715844 1715990 . + . gene_id "RvY_11598"; transcript_id "RvY_11598.1"; Scaffold006 rebuild transcript 1716911 1718693 . + . gene_id "RvY_11599"; transcript_id "RvY_11599.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; Scaffold006 rebuild exon 1716911 1717500 . + . gene_id "RvY_11599"; transcript_id "RvY_11599.1"; Scaffold006 rebuild exon 1717684 1718135 . + . gene_id "RvY_11599"; transcript_id "RvY_11599.1"; Scaffold006 rebuild exon 1718203 1718693 . + . gene_id "RvY_11599"; transcript_id "RvY_11599.1"; Scaffold006 rebuild transcript 1720706 1727589 . + . gene_id "RvY_11600"; transcript_id "RvY_11600.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1720706 1720879 . + . gene_id "RvY_11600"; transcript_id "RvY_11600.1"; Scaffold006 rebuild exon 1725547 1725664 . + . gene_id "RvY_11600"; transcript_id "RvY_11600.1"; Scaffold006 rebuild exon 1727351 1727589 . + . gene_id "RvY_11600"; transcript_id "RvY_11600.1"; Scaffold006 rebuild transcript 1727116 1727295 . - . gene_id "RvY_11601"; transcript_id "RvY_11601.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1727116 1727295 . - . gene_id "RvY_11601"; transcript_id "RvY_11601.1"; Scaffold006 rebuild transcript 1727981 1729011 . + . gene_id "RvY_11602"; transcript_id "RvY_11602.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; similar_genes "SSR3_HUMAN(e-value:2.9e-06;bit-score:50.0)"; Scaffold006 rebuild exon 1727981 1728244 . + . gene_id "RvY_11602"; transcript_id "RvY_11602.1"; Scaffold006 rebuild exon 1728530 1728687 . + . gene_id "RvY_11602"; transcript_id "RvY_11602.1"; Scaffold006 rebuild exon 1728830 1728903 . + . gene_id "RvY_11602"; transcript_id "RvY_11602.1"; Scaffold006 rebuild exon 1728998 1729011 . + . gene_id "RvY_11602"; transcript_id "RvY_11602.1"; Scaffold006 rebuild transcript 1729199 1731177 . + . gene_id "RvY_11603"; transcript_id "RvY_11603.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 1729199 1729199 . + . gene_id "RvY_11603"; transcript_id "RvY_11603.1"; Scaffold006 rebuild exon 1729309 1729618 . + . gene_id "RvY_11603"; transcript_id "RvY_11603.1"; Scaffold006 rebuild exon 1730556 1731177 . + . gene_id "RvY_11603"; transcript_id "RvY_11603.1"; Scaffold006 rebuild transcript 1734020 1736194 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; gene_name "(2)PepO"; annotation "hypothetical protein."; Pfam "(2)[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "(2)Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "(2)EC3.4.24.11"; similar_genes "(2)MMEL1_HUMAN(e-value:1.3e-08;bit-score:58.0)"; Scaffold006 rebuild exon 1734020 1734269 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; Scaffold006 rebuild exon 1734391 1734549 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; Scaffold006 rebuild exon 1734602 1734697 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; Scaffold006 rebuild exon 1734778 1735181 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; Scaffold006 rebuild exon 1735433 1735930 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; Scaffold006 rebuild exon 1736006 1736194 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.1"; Scaffold006 rebuild transcript 1734819 1737295 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; gene_name "(2)PepO"; annotation "hypothetical protein."; Pfam "(2)[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; CDD "(2)Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]"; EC "(2)EC3.4.24.11"; similar_genes "(2)MMEL1_HUMAN(e-value:1.3e-08;bit-score:58.0)"; Scaffold006 rebuild exon 1734819 1735181 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; Scaffold006 rebuild exon 1735433 1735930 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; Scaffold006 rebuild exon 1736006 1736185 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; Scaffold006 rebuild exon 1736264 1736432 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; Scaffold006 rebuild exon 1736526 1736645 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; Scaffold006 rebuild exon 1737054 1737295 . + . gene_id "RvY_11604"; transcript_id "RvY_11604.2"; Scaffold006 rebuild transcript 1738157 1739364 . - . gene_id "RvY_11605"; transcript_id "RvY_11605.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1738157 1738206 . - . gene_id "RvY_11605"; transcript_id "RvY_11605.1"; Scaffold006 rebuild exon 1739241 1739364 . - . gene_id "RvY_11605"; transcript_id "RvY_11605.1"; Scaffold006 rebuild transcript 1742316 1745342 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; gene_name "CSNK1E"; annotation "Casein kinase I isoform epsilon"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08960"; similar_genes "KC1E_CHICK(e-value:1.7e-142;bit-score:502.0)"; Scaffold006 rebuild exon 1742316 1742536 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1743101 1743227 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1743516 1743667 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1743793 1743963 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1744122 1744278 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1744509 1744580 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1744727 1744875 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1745066 1745176 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild exon 1745252 1745342 . - . gene_id "RvY_11606"; transcript_id "RvY_11606.1"; Scaffold006 rebuild transcript 1746556 1746750 . - . gene_id "RvY_11607"; transcript_id "RvY_11607.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1746556 1746750 . - . gene_id "RvY_11607"; transcript_id "RvY_11607.1"; Scaffold006 rebuild transcript 1746848 1747486 . + . gene_id "RvY_11608"; transcript_id "RvY_11608.1"; gene_name "RP-L34e"; annotation "large subunit ribosomal protein L34e"; Pfam "[Ribosomal_L34e] Ribosomal protein L34e"; CDD "60S ribosomal protein L34; Provisional"; KO "K02915"; similar_genes "RL34_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold006 rebuild exon 1746848 1746912 . + . gene_id "RvY_11608"; transcript_id "RvY_11608.1"; Scaffold006 rebuild exon 1746985 1747078 . + . gene_id "RvY_11608"; transcript_id "RvY_11608.1"; Scaffold006 rebuild exon 1747142 1747245 . + . gene_id "RvY_11608"; transcript_id "RvY_11608.1"; Scaffold006 rebuild exon 1747411 1747486 . + . gene_id "RvY_11608"; transcript_id "RvY_11608.1"; Scaffold006 rebuild transcript 1748007 1750081 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; gene_name "ARPC1A_B"; annotation "Actin-related protein 2/3 complex subunit 1A"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K05757"; similar_genes "ARC1A_MOUSE(e-value:2.2e-55;bit-score:213.0)"; Scaffold006 rebuild exon 1748007 1748103 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1748172 1748261 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1748324 1748427 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1748494 1748675 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1748760 1748863 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1749149 1749256 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1749370 1749697 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild exon 1749988 1750081 . - . gene_id "RvY_11609"; transcript_id "RvY_11609.1"; Scaffold006 rebuild transcript 1753839 1754558 . - . gene_id "RvY_11610"; transcript_id "RvY_11610.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1753839 1754558 . - . gene_id "RvY_11610"; transcript_id "RvY_11610.1"; Scaffold006 rebuild transcript 1758216 1762325 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; gene_name "SCYL"; annotation "putative N-terminal kinase-like protein"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[HEAT] HEAT repeat"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; KO "K08876"; similar_genes "NTKL_XENLA(e-value:2.4e-50;bit-score:196.0)"; Scaffold006 rebuild exon 1758216 1758518 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1758577 1758732 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1758812 1758898 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1758971 1759101 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1759361 1759519 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1759598 1759925 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1760149 1760241 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1760335 1760448 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1760544 1760651 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1760729 1760887 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1760959 1761114 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1761311 1761622 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1761706 1761819 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1761937 1762017 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1762080 1762139 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild exon 1762200 1762325 . - . gene_id "RvY_11611"; transcript_id "RvY_11611.1"; Scaffold006 rebuild transcript 1768641 1768898 . - . gene_id "RvY_11612"; transcript_id "RvY_11612.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1768641 1768898 . - . gene_id "RvY_11612"; transcript_id "RvY_11612.1"; Scaffold006 rebuild transcript 1772223 1772492 . - . gene_id "RvY_11613"; transcript_id "RvY_11613.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1772223 1772492 . - . gene_id "RvY_11613"; transcript_id "RvY_11613.1"; Scaffold006 rebuild transcript 1773203 1780629 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; annotation "Signal-induced proliferation-associated 1-like protein 2"; Pfam "[Rap_GAP] Rap/ran-GAP"; similar_genes "SI1L2_HUMAN(e-value:1.0e-97;bit-score:354.0)"; Scaffold006 rebuild exon 1773203 1773262 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1773588 1773942 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1774108 1774265 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1774425 1774773 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1775091 1775509 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1775843 1776019 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1776215 1776290 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1776366 1776464 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1776544 1776647 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1776711 1776868 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1776932 1777038 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1777334 1777718 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1777901 1778009 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1778114 1778251 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1778356 1778471 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1778542 1778712 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1779088 1779706 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1779777 1779892 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1779997 1780100 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1780182 1780293 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1780359 1780470 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild exon 1780552 1780629 . + . gene_id "RvY_11614"; transcript_id "RvY_11614.1"; Scaffold006 rebuild transcript 1781541 1782674 . - . gene_id "RvY_11615"; transcript_id "RvY_11615.1"; gene_name "H3"; annotation "hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone H3."; similar_genes "H3_MASBA(e-value:3.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 1781541 1781577 . - . gene_id "RvY_11615"; transcript_id "RvY_11615.1"; Scaffold006 rebuild exon 1781690 1781796 . - . gene_id "RvY_11615"; transcript_id "RvY_11615.1"; Scaffold006 rebuild exon 1782105 1782674 . - . gene_id "RvY_11615"; transcript_id "RvY_11615.1"; Scaffold006 rebuild transcript 1783846 1785844 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 1783846 1784243 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; Scaffold006 rebuild exon 1784314 1784515 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; Scaffold006 rebuild exon 1784616 1784765 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; Scaffold006 rebuild exon 1784885 1785182 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; Scaffold006 rebuild exon 1785287 1785686 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; Scaffold006 rebuild exon 1785766 1785844 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.1"; Scaffold006 rebuild transcript 1783846 1789954 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.2"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 1783846 1784243 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.2"; Scaffold006 rebuild exon 1784314 1784515 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.2"; Scaffold006 rebuild exon 1784616 1784765 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.2"; Scaffold006 rebuild exon 1789907 1789954 . - . gene_id "RvY_11616"; transcript_id "RvY_11616.2"; Scaffold006 rebuild transcript 1791246 1794870 . + . gene_id "RvY_11617"; transcript_id "RvY_11617.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold006 rebuild exon 1791246 1791861 . + . gene_id "RvY_11617"; transcript_id "RvY_11617.1"; Scaffold006 rebuild exon 1792114 1792299 . + . gene_id "RvY_11617"; transcript_id "RvY_11617.1"; Scaffold006 rebuild exon 1792415 1792606 . + . gene_id "RvY_11617"; transcript_id "RvY_11617.1"; Scaffold006 rebuild exon 1793306 1793731 . + . gene_id "RvY_11617"; transcript_id "RvY_11617.1"; Scaffold006 rebuild exon 1794383 1794870 . + . gene_id "RvY_11617"; transcript_id "RvY_11617.1"; Scaffold006 rebuild transcript 1795932 1798744 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Glyco_hydro_16] Glycosyl hydrolases family 16"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR1_HUMAN(e-value:4.0e-12;bit-score:69.0)"; Scaffold006 rebuild exon 1795932 1797075 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.1"; Scaffold006 rebuild exon 1797172 1797396 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.1"; Scaffold006 rebuild exon 1797465 1797856 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.1"; Scaffold006 rebuild exon 1798255 1798475 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.1"; Scaffold006 rebuild exon 1798537 1798744 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.1"; Scaffold006 rebuild transcript 1795932 1798479 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.2"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Glyco_hydro_16] Glycosyl hydrolases family 16"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR1_HUMAN(e-value:4.0e-12;bit-score:69.0)"; Scaffold006 rebuild exon 1795932 1797075 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.2"; Scaffold006 rebuild exon 1797172 1797396 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.2"; Scaffold006 rebuild exon 1797465 1797856 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.2"; Scaffold006 rebuild exon 1798255 1798479 . + . gene_id "RvY_11618"; transcript_id "RvY_11618.2"; Scaffold006 rebuild transcript 1799689 1800171 . - . gene_id "RvY_11619"; transcript_id "RvY_11619.1"; annotation "hypothetical protein."; Pfam "[Acetyltransf_7] Acetyltransferase (GNAT) domain"; Scaffold006 rebuild exon 1799689 1800171 . - . gene_id "RvY_11619"; transcript_id "RvY_11619.1"; Scaffold006 rebuild transcript 1801455 1801739 . - . gene_id "RvY_11620"; transcript_id "RvY_11620.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1801455 1801739 . - . gene_id "RvY_11620"; transcript_id "RvY_11620.1"; Scaffold006 rebuild transcript 1801992 1802260 . + . gene_id "RvY_11621"; transcript_id "RvY_11621.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1801992 1802058 . + . gene_id "RvY_11621"; transcript_id "RvY_11621.1"; Scaffold006 rebuild exon 1802211 1802260 . + . gene_id "RvY_11621"; transcript_id "RvY_11621.1"; Scaffold006 rebuild transcript 1802755 1802889 . + . gene_id "RvY_11622"; transcript_id "RvY_11622.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1802755 1802889 . + . gene_id "RvY_11622"; transcript_id "RvY_11622.1"; Scaffold006 rebuild transcript 1806765 1806956 . - . gene_id "RvY_11623"; transcript_id "RvY_11623.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1806765 1806956 . - . gene_id "RvY_11623"; transcript_id "RvY_11623.1"; Scaffold006 rebuild transcript 1806970 1807598 . - . gene_id "RvY_11624"; transcript_id "RvY_11624.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1806970 1807191 . - . gene_id "RvY_11624"; transcript_id "RvY_11624.1"; Scaffold006 rebuild exon 1807497 1807598 . - . gene_id "RvY_11624"; transcript_id "RvY_11624.1"; Scaffold006 rebuild transcript 1810654 1811244 . + . gene_id "RvY_11625"; transcript_id "RvY_11625.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold006 rebuild exon 1810654 1811244 . + . gene_id "RvY_11625"; transcript_id "RvY_11625.1"; Scaffold006 rebuild transcript 1812267 1823228 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; gene_name "KU"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain|[Antistasin] Antistasin family|[Thyroglobulin_1] Thyroglobulin type-1 repeat"; CDD "BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein."; similar_genes "WFKN2_BOVIN(e-value:2.4e-12;bit-score:70.0)"; Scaffold006 rebuild exon 1812267 1812404 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1812497 1812574 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1812682 1812915 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1813602 1813828 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1813893 1814432 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1814689 1814868 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1814934 1815272 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1815641 1816090 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1816269 1816460 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1816542 1816751 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1816876 1817454 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1817641 1818000 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1818300 1818698 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1818939 1819667 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1819887 1820232 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1820484 1820587 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1820705 1820887 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1821012 1821161 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1821486 1821677 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1821813 1821894 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1821982 1822085 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1822321 1822527 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1822629 1822784 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild exon 1823120 1823228 . - . gene_id "RvY_11626"; transcript_id "RvY_11626.1"; Scaffold006 rebuild transcript 1827217 1827982 . - . gene_id "RvY_11627"; transcript_id "RvY_11627.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1827217 1827598 . - . gene_id "RvY_11627"; transcript_id "RvY_11627.1"; Scaffold006 rebuild exon 1827660 1827982 . - . gene_id "RvY_11627"; transcript_id "RvY_11627.1"; Scaffold006 rebuild transcript 1827999 1828755 . - . gene_id "RvY_11628"; transcript_id "RvY_11628.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1827999 1828014 . - . gene_id "RvY_11628"; transcript_id "RvY_11628.1"; Scaffold006 rebuild exon 1828469 1828755 . - . gene_id "RvY_11628"; transcript_id "RvY_11628.1"; Scaffold006 rebuild transcript 1830192 1830769 . + . gene_id "RvY_11629"; transcript_id "RvY_11629.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1830192 1830242 . + . gene_id "RvY_11629"; transcript_id "RvY_11629.1"; Scaffold006 rebuild exon 1830356 1830769 . + . gene_id "RvY_11629"; transcript_id "RvY_11629.1"; Scaffold006 rebuild transcript 1831059 1832489 . - . gene_id "RvY_11630"; transcript_id "RvY_11630.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1831059 1831128 . - . gene_id "RvY_11630"; transcript_id "RvY_11630.1"; Scaffold006 rebuild exon 1831207 1831319 . - . gene_id "RvY_11630"; transcript_id "RvY_11630.1"; Scaffold006 rebuild exon 1831360 1831514 . - . gene_id "RvY_11630"; transcript_id "RvY_11630.1"; Scaffold006 rebuild exon 1831674 1831973 . - . gene_id "RvY_11630"; transcript_id "RvY_11630.1"; Scaffold006 rebuild exon 1832417 1832489 . - . gene_id "RvY_11630"; transcript_id "RvY_11630.1"; Scaffold006 rebuild transcript 1833813 1836006 . - . gene_id "RvY_11631"; transcript_id "RvY_11631.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1833813 1833953 . - . gene_id "RvY_11631"; transcript_id "RvY_11631.1"; Scaffold006 rebuild exon 1834021 1834477 . - . gene_id "RvY_11631"; transcript_id "RvY_11631.1"; Scaffold006 rebuild exon 1834723 1835469 . - . gene_id "RvY_11631"; transcript_id "RvY_11631.1"; Scaffold006 rebuild exon 1835663 1836006 . - . gene_id "RvY_11631"; transcript_id "RvY_11631.1"; Scaffold006 rebuild transcript 1836808 1837939 . - . gene_id "RvY_11632"; transcript_id "RvY_11632.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1836808 1837282 . - . gene_id "RvY_11632"; transcript_id "RvY_11632.1"; Scaffold006 rebuild exon 1837461 1837939 . - . gene_id "RvY_11632"; transcript_id "RvY_11632.1"; Scaffold006 rebuild transcript 1837403 1837939 . - . gene_id "RvY_11632"; transcript_id "RvY_11632.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1837403 1837939 . - . gene_id "RvY_11632"; transcript_id "RvY_11632.2"; Scaffold006 rebuild transcript 1839035 1841625 . + . gene_id "RvY_11633"; transcript_id "RvY_11633.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1839035 1839059 . + . gene_id "RvY_11633"; transcript_id "RvY_11633.1"; Scaffold006 rebuild exon 1839232 1839555 . + . gene_id "RvY_11633"; transcript_id "RvY_11633.1"; Scaffold006 rebuild exon 1841432 1841625 . + . gene_id "RvY_11633"; transcript_id "RvY_11633.1"; Scaffold006 rebuild transcript 1842200 1842334 . - . gene_id "RvY_11634"; transcript_id "RvY_11634.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1842200 1842334 . - . gene_id "RvY_11634"; transcript_id "RvY_11634.1"; Scaffold006 rebuild transcript 1843244 1844612 . - . gene_id "RvY_11635"; transcript_id "RvY_11635.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1843244 1844084 . - . gene_id "RvY_11635"; transcript_id "RvY_11635.1"; Scaffold006 rebuild exon 1844149 1844612 . - . gene_id "RvY_11635"; transcript_id "RvY_11635.1"; Scaffold006 rebuild transcript 1845180 1846065 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.1"; gene_name "(1)SKP1"; annotation "(1)S-phase kinase-associated protein 1(2)hypothetical protein."; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain|[Skp1] Skp1 family, dimerisation domain"; CDD "(1)SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]"; KO "(1)K03094"; similar_genes "(1)SKP1A_DICDI(e-value:5.0e-21;bit-score:99.0)"; Scaffold006 rebuild exon 1845180 1845293 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.1"; Scaffold006 rebuild exon 1845404 1845508 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.1"; Scaffold006 rebuild exon 1845709 1846065 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.1"; Scaffold006 rebuild transcript 1845596 1846109 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.2"; gene_name "(1)SKP1"; annotation "(1)S-phase kinase-associated protein 1(2)hypothetical protein."; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain|[Skp1] Skp1 family, dimerisation domain"; CDD "(1)SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]"; KO "(1)K03094"; similar_genes "(1)SKP1A_DICDI(e-value:5.0e-21;bit-score:99.0)"; Scaffold006 rebuild exon 1845596 1845641 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.2"; Scaffold006 rebuild exon 1845709 1846109 . + . gene_id "RvY_11636"; transcript_id "RvY_11636.2"; Scaffold006 rebuild transcript 1847227 1847457 . - . gene_id "RvY_11637"; transcript_id "RvY_11637.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1847227 1847457 . - . gene_id "RvY_11637"; transcript_id "RvY_11637.1"; Scaffold006 rebuild transcript 1847314 1849776 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; similar_genes "CBAA1_BOVIN(e-value:1.3e-25;bit-score:114.0)"; Scaffold006 rebuild exon 1847314 1847603 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1847668 1847971 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1848131 1848296 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1848391 1848540 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1848721 1849007 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1849087 1849230 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1849357 1849555 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild exon 1849625 1849776 . + . gene_id "RvY_11638"; transcript_id "RvY_11638.1"; Scaffold006 rebuild transcript 1850194 1853393 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; gene_name "HNRNPF_H"; annotation "heterogeneous nuclear ribonucleoprotein F/H"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold006 rebuild exon 1850194 1850252 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1850346 1850567 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1850767 1851189 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1851390 1851525 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1851642 1851891 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1852076 1852220 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1852670 1852807 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1852884 1853039 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild exon 1853123 1853393 . - . gene_id "RvY_11639"; transcript_id "RvY_11639.1"; Scaffold006 rebuild transcript 1855434 1856809 . + . gene_id "RvY_11640"; transcript_id "RvY_11640.1"; annotation "hypothetical protein."; Pfam "[Calcipressin]"; similar_genes "RCAN2_BOVIN(e-value:3.6e-13;bit-score:73.0)"; Scaffold006 rebuild exon 1855434 1855658 . + . gene_id "RvY_11640"; transcript_id "RvY_11640.1"; Scaffold006 rebuild exon 1855727 1855900 . + . gene_id "RvY_11640"; transcript_id "RvY_11640.1"; Scaffold006 rebuild exon 1856129 1856297 . + . gene_id "RvY_11640"; transcript_id "RvY_11640.1"; Scaffold006 rebuild exon 1856595 1856809 . + . gene_id "RvY_11640"; transcript_id "RvY_11640.1"; Scaffold006 rebuild transcript 1857829 1859769 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; gene_name "SPOCK"; annotation "sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican)"; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; CDD "SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed Scaffold006 rebuild exon 1857829 1857981 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild exon 1858122 1858216 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild exon 1858671 1858919 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild exon 1859036 1859259 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild exon 1859321 1859420 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild exon 1859503 1859569 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild exon 1859680 1859769 . - . gene_id "RvY_11641"; transcript_id "RvY_11641.1"; Scaffold006 rebuild transcript 1861174 1861513 . + . gene_id "RvY_11642"; transcript_id "RvY_11642.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1861174 1861290 . + . gene_id "RvY_11642"; transcript_id "RvY_11642.1"; Scaffold006 rebuild exon 1861373 1861513 . + . gene_id "RvY_11642"; transcript_id "RvY_11642.1"; Scaffold006 rebuild transcript 1862149 1863933 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; annotation "hypothetical protein."; Pfam "[NHL] NHL repeat"; EC "EC4.3.2.5"; similar_genes "PAL_CAEEL(e-value:1.6e-13;bit-score:74.0)"; Scaffold006 rebuild exon 1862149 1862274 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild exon 1862340 1862488 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild exon 1862579 1862695 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild exon 1862760 1862832 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild exon 1862907 1863046 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild exon 1863119 1863432 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild exon 1863695 1863933 . + . gene_id "RvY_11643"; transcript_id "RvY_11643.1"; Scaffold006 rebuild transcript 1865915 1869413 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; annotation "(1)putative Sodium-dependent dopamine transporter(2)putative Sodium-dependent serotonin transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "(1)SC6A3_RAT(e-value:4.5e-26;bit-score:116.0)(2)SC6A4_RAT(e-value:2.3e-29;bit-score:127.0)"; Scaffold006 rebuild exon 1865915 1866069 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild exon 1867692 1867965 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild exon 1868028 1868256 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild exon 1868329 1868441 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild exon 1868575 1868715 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild exon 1868874 1869242 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild exon 1869315 1869413 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.1"; Scaffold006 rebuild transcript 1865031 1868273 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; annotation "(1)putative Sodium-dependent dopamine transporter(2)putative Sodium-dependent serotonin transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "(1)SC6A3_RAT(e-value:4.5e-26;bit-score:116.0)(2)SC6A4_RAT(e-value:2.3e-29;bit-score:127.0)"; Scaffold006 rebuild exon 1865031 1865469 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; Scaffold006 rebuild exon 1865544 1865678 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; Scaffold006 rebuild exon 1865745 1865796 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; Scaffold006 rebuild exon 1865875 1866069 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; Scaffold006 rebuild exon 1867692 1867965 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; Scaffold006 rebuild exon 1868028 1868273 . + . gene_id "RvY_11644"; transcript_id "RvY_11644.2"; Scaffold006 rebuild transcript 1871142 1877195 . - . gene_id "RvY_11645"; transcript_id "RvY_11645.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold006 rebuild exon 1871142 1871770 . - . gene_id "RvY_11645"; transcript_id "RvY_11645.1"; Scaffold006 rebuild exon 1872538 1872913 . - . gene_id "RvY_11645"; transcript_id "RvY_11645.1"; Scaffold006 rebuild exon 1874470 1874508 . - . gene_id "RvY_11645"; transcript_id "RvY_11645.1"; Scaffold006 rebuild exon 1874608 1874744 . - . gene_id "RvY_11645"; transcript_id "RvY_11645.1"; Scaffold006 rebuild exon 1876847 1877195 . - . gene_id "RvY_11645"; transcript_id "RvY_11645.1"; Scaffold006 rebuild transcript 1875779 1876636 . + . gene_id "RvY_11646"; transcript_id "RvY_11646.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 1875779 1876636 . + . gene_id "RvY_11646"; transcript_id "RvY_11646.1"; Scaffold006 rebuild transcript 1878862 1879122 . + . gene_id "RvY_11647"; transcript_id "RvY_11647.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1878862 1879122 . + . gene_id "RvY_11647"; transcript_id "RvY_11647.1"; Scaffold006 rebuild transcript 1880708 1881097 . + . gene_id "RvY_11648"; transcript_id "RvY_11648.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1880708 1881097 . + . gene_id "RvY_11648"; transcript_id "RvY_11648.1"; Scaffold006 rebuild transcript 1883384 1884337 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.1"; gene_name "(1)RT_LTR"; annotation "hypothetical protein."; CDD "(1)RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold006 rebuild exon 1883384 1884337 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.1"; Scaffold006 rebuild transcript 1882580 1883394 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.2"; gene_name "(1)RT_LTR"; annotation "hypothetical protein."; CDD "(1)RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold006 rebuild exon 1882580 1882910 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.2"; Scaffold006 rebuild exon 1883030 1883394 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.2"; Scaffold006 rebuild transcript 1882580 1883062 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.3"; gene_name "(1)RT_LTR"; annotation "hypothetical protein."; CDD "(1)RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold006 rebuild exon 1882580 1883062 . + . gene_id "RvY_11649"; transcript_id "RvY_11649.3"; Scaffold006 rebuild transcript 1884461 1885300 . + . gene_id "RvY_11650"; transcript_id "RvY_11650.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1884461 1885300 . + . gene_id "RvY_11650"; transcript_id "RvY_11650.1"; Scaffold006 rebuild transcript 1885668 1886492 . + . gene_id "RvY_11651"; transcript_id "RvY_11651.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1885668 1886492 . + . gene_id "RvY_11651"; transcript_id "RvY_11651.1"; Scaffold006 rebuild transcript 1886740 1890861 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; gene_name "KCNA5"; annotation "Potassium voltage-gated channel protein Shaker"; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; KO "K04878"; similar_genes "KCNAS_DROME(e-value:3.2e-69;bit-score:259.0)"; Scaffold006 rebuild exon 1886740 1887002 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; Scaffold006 rebuild exon 1887729 1887878 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; Scaffold006 rebuild exon 1888324 1888669 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; Scaffold006 rebuild exon 1889599 1889693 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; Scaffold006 rebuild exon 1889757 1890158 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; Scaffold006 rebuild exon 1890396 1890861 . - . gene_id "RvY_11652"; transcript_id "RvY_11652.1"; Scaffold006 rebuild transcript 1892622 1893053 . + . gene_id "RvY_11653"; transcript_id "RvY_11653.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1892622 1893053 . + . gene_id "RvY_11653"; transcript_id "RvY_11653.1"; Scaffold006 rebuild transcript 1899061 1899309 . + . gene_id "RvY_11654"; transcript_id "RvY_11654.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1899061 1899309 . + . gene_id "RvY_11654"; transcript_id "RvY_11654.1"; Scaffold006 rebuild transcript 1902985 1905973 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; gene_name "INTS9"; annotation "integrator complex subunit 9"; Pfam "[Beta-Casp]"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; KO "K13146"; similar_genes "INT9_BOVIN(e-value:4.4e-07;bit-score:53.0)"; Scaffold006 rebuild exon 1902985 1903475 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; Scaffold006 rebuild exon 1903677 1903947 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; Scaffold006 rebuild exon 1904010 1904330 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; Scaffold006 rebuild exon 1904395 1904663 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; Scaffold006 rebuild exon 1904926 1905259 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; Scaffold006 rebuild exon 1905551 1905973 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.1"; Scaffold006 rebuild transcript 1903618 1905973 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.2"; gene_name "INTS9"; annotation "integrator complex subunit 9"; Pfam "[Beta-Casp]"; CDD "Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]"; KO "K13146"; similar_genes "INT9_BOVIN(e-value:4.4e-07;bit-score:53.0)"; Scaffold006 rebuild exon 1903618 1903947 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.2"; Scaffold006 rebuild exon 1904010 1904330 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.2"; Scaffold006 rebuild exon 1904395 1904663 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.2"; Scaffold006 rebuild exon 1904926 1905259 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.2"; Scaffold006 rebuild exon 1905551 1905973 . - . gene_id "RvY_11655"; transcript_id "RvY_11655.2"; Scaffold006 rebuild transcript 1906391 1907008 . + . gene_id "RvY_11656"; transcript_id "RvY_11656.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1906391 1906521 . + . gene_id "RvY_11656"; transcript_id "RvY_11656.1"; Scaffold006 rebuild exon 1906576 1907008 . + . gene_id "RvY_11656"; transcript_id "RvY_11656.1"; Scaffold006 rebuild transcript 1907907 1913558 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; gene_name "LPHN2"; annotation "latrophilin 2"; Pfam "[Gal_Lectin] Galactose binding lectin domain|[7tm_2] 7 transmembrane receptor (Secretin family)|[DUF3497]|[GPS] Latrophilin/CL-1-like GPS domain"; KO "K04593"; similar_genes "LPHN1_RAT(e-value:6.6e-23;bit-score:105.0)"; Scaffold006 rebuild exon 1907907 1908842 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1908996 1909154 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1909240 1909906 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1909983 1910103 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1910187 1910745 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1910929 1911764 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1912025 1912134 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1912220 1912427 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild exon 1913462 1913558 . - . gene_id "RvY_11657"; transcript_id "RvY_11657.1"; Scaffold006 rebuild transcript 1913786 1915641 . + . gene_id "RvY_11658"; transcript_id "RvY_11658.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1913786 1913853 . + . gene_id "RvY_11658"; transcript_id "RvY_11658.1"; Scaffold006 rebuild exon 1915413 1915641 . + . gene_id "RvY_11658"; transcript_id "RvY_11658.1"; Scaffold006 rebuild transcript 1925450 1925758 . - . gene_id "RvY_11659"; transcript_id "RvY_11659.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1925450 1925758 . - . gene_id "RvY_11659"; transcript_id "RvY_11659.1"; Scaffold006 rebuild transcript 1929786 1930094 . - . gene_id "RvY_11660"; transcript_id "RvY_11660.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1929786 1930094 . - . gene_id "RvY_11660"; transcript_id "RvY_11660.1"; Scaffold006 rebuild transcript 1930790 1931041 . - . gene_id "RvY_11661"; transcript_id "RvY_11661.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1930790 1931041 . - . gene_id "RvY_11661"; transcript_id "RvY_11661.1"; Scaffold006 rebuild transcript 1931346 1931876 . - . gene_id "RvY_11662"; transcript_id "RvY_11662.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1931346 1931876 . - . gene_id "RvY_11662"; transcript_id "RvY_11662.1"; Scaffold006 rebuild transcript 1942385 1942804 . - . gene_id "RvY_11663"; transcript_id "RvY_11663.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1942385 1942804 . - . gene_id "RvY_11663"; transcript_id "RvY_11663.1"; Scaffold006 rebuild transcript 1943861 1946988 . - . gene_id "RvY_11664"; transcript_id "RvY_11664.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1943861 1944033 . - . gene_id "RvY_11664"; transcript_id "RvY_11664.1"; Scaffold006 rebuild exon 1944933 1945252 . - . gene_id "RvY_11664"; transcript_id "RvY_11664.1"; Scaffold006 rebuild exon 1946948 1946988 . - . gene_id "RvY_11664"; transcript_id "RvY_11664.1"; Scaffold006 rebuild transcript 1949399 1951039 . + . gene_id "RvY_11665"; transcript_id "RvY_11665.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold006 rebuild exon 1949399 1949700 . + . gene_id "RvY_11665"; transcript_id "RvY_11665.1"; Scaffold006 rebuild exon 1949761 1950262 . + . gene_id "RvY_11665"; transcript_id "RvY_11665.1"; Scaffold006 rebuild exon 1950353 1950455 . + . gene_id "RvY_11665"; transcript_id "RvY_11665.1"; Scaffold006 rebuild exon 1950513 1951039 . + . gene_id "RvY_11665"; transcript_id "RvY_11665.1"; Scaffold006 rebuild transcript 1951630 1952164 . - . gene_id "RvY_11666"; transcript_id "RvY_11666.1"; gene_name "TrkA"; annotation "hypothetical protein."; Pfam "[FMO-like] Flavin-binding monooxygenase-like"; CDD "Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]"; Scaffold006 rebuild exon 1951630 1952134 . - . gene_id "RvY_11666"; transcript_id "RvY_11666.1"; Scaffold006 rebuild exon 1952157 1952164 . - . gene_id "RvY_11666"; transcript_id "RvY_11666.1"; Scaffold006 rebuild transcript 1953415 1954209 . + . gene_id "RvY_11667"; transcript_id "RvY_11667.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1953415 1954209 . + . gene_id "RvY_11667"; transcript_id "RvY_11667.1"; Scaffold006 rebuild transcript 1954481 1955696 . - . gene_id "RvY_11668"; transcript_id "RvY_11668.1"; gene_name "clpP"; annotation "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial"; Pfam "[CLP_protease] Clp protease"; CDD "ATP-dependent Clp protease proteolytic subunit; Reviewed"; EC "EC3.4.21.92"; KO "K01358"; similar_genes "CLPP_MOUSE(e-value:1.6e-83;bit-score:307.0)"; Scaffold006 rebuild exon 1954481 1954719 . - . gene_id "RvY_11668"; transcript_id "RvY_11668.1"; Scaffold006 rebuild exon 1954788 1954893 . - . gene_id "RvY_11668"; transcript_id "RvY_11668.1"; Scaffold006 rebuild exon 1954955 1955239 . - . gene_id "RvY_11668"; transcript_id "RvY_11668.1"; Scaffold006 rebuild exon 1955424 1955582 . - . gene_id "RvY_11668"; transcript_id "RvY_11668.1"; Scaffold006 rebuild exon 1955670 1955696 . - . gene_id "RvY_11668"; transcript_id "RvY_11668.1"; Scaffold006 rebuild transcript 1955835 1956224 . - . gene_id "RvY_11669"; transcript_id "RvY_11669.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1955835 1956224 . - . gene_id "RvY_11669"; transcript_id "RvY_11669.1"; Scaffold006 rebuild transcript 1957868 1958710 . + . gene_id "RvY_11670"; transcript_id "RvY_11670.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1957868 1958041 . + . gene_id "RvY_11670"; transcript_id "RvY_11670.1"; Scaffold006 rebuild exon 1958603 1958710 . + . gene_id "RvY_11670"; transcript_id "RvY_11670.1"; Scaffold006 rebuild transcript 1961350 1961906 . + . gene_id "RvY_11671"; transcript_id "RvY_11671.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1961350 1961504 . + . gene_id "RvY_11671"; transcript_id "RvY_11671.1"; Scaffold006 rebuild exon 1961798 1961906 . + . gene_id "RvY_11671"; transcript_id "RvY_11671.1"; Scaffold006 rebuild transcript 1963101 1963484 . - . gene_id "RvY_11672"; transcript_id "RvY_11672.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1963101 1963484 . - . gene_id "RvY_11672"; transcript_id "RvY_11672.1"; Scaffold006 rebuild transcript 1965545 1966006 . + . gene_id "RvY_11673"; transcript_id "RvY_11673.1"; gene_name "Bromo_SNF2L2"; annotation "hypothetical protein."; Pfam "[Bromodomain]"; CDD "Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; Scaffold006 rebuild exon 1965545 1966006 . + . gene_id "RvY_11673"; transcript_id "RvY_11673.1"; Scaffold006 rebuild transcript 1966631 1966973 . - . gene_id "RvY_11674"; transcript_id "RvY_11674.2"; annotation "hypothetical protein."; similar_genes "K2C1_CANFA(e-value:5.1e-08;bit-score:56.0)"; Scaffold006 rebuild exon 1966631 1966839 . - . gene_id "RvY_11674"; transcript_id "RvY_11674.2"; Scaffold006 rebuild exon 1966925 1966973 . - . gene_id "RvY_11674"; transcript_id "RvY_11674.2"; Scaffold006 rebuild transcript 1968511 1968842 . - . gene_id "RvY_11675"; transcript_id "RvY_11675.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1968511 1968668 . - . gene_id "RvY_11675"; transcript_id "RvY_11675.1"; Scaffold006 rebuild exon 1968782 1968842 . - . gene_id "RvY_11675"; transcript_id "RvY_11675.1"; Scaffold006 rebuild transcript 1971367 1973696 . - . gene_id "RvY_11676"; transcript_id "RvY_11676.1"; gene_name "H2A"; annotation "putative Histone H2A"; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "Histone 2A."; similar_genes "H2A_MYTCA(e-value:1.1e-33;bit-score:141.0)"; Scaffold006 rebuild exon 1971367 1971564 . - . gene_id "RvY_11676"; transcript_id "RvY_11676.1"; Scaffold006 rebuild exon 1972844 1973035 . - . gene_id "RvY_11676"; transcript_id "RvY_11676.1"; Scaffold006 rebuild exon 1973122 1973356 . - . gene_id "RvY_11676"; transcript_id "RvY_11676.1"; Scaffold006 rebuild exon 1973656 1973696 . - . gene_id "RvY_11676"; transcript_id "RvY_11676.1"; Scaffold006 rebuild transcript 1974378 1974869 . - . gene_id "RvY_11677"; transcript_id "RvY_11677.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1974378 1974869 . - . gene_id "RvY_11677"; transcript_id "RvY_11677.1"; Scaffold006 rebuild transcript 1976922 1978610 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.1"; annotation "hypothetical protein."; Pfam "[BACK] BTB And C-terminal Kelch"; Scaffold006 rebuild exon 1976922 1977094 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.1"; Scaffold006 rebuild exon 1977165 1977711 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.1"; Scaffold006 rebuild exon 1977881 1978229 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.1"; Scaffold006 rebuild exon 1978288 1978610 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.1"; Scaffold006 rebuild transcript 1977325 1978312 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.2"; annotation "hypothetical protein."; Pfam "[BACK] BTB And C-terminal Kelch"; Scaffold006 rebuild exon 1977325 1977711 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.2"; Scaffold006 rebuild exon 1977881 1978312 . + . gene_id "RvY_11678"; transcript_id "RvY_11678.2"; Scaffold006 rebuild transcript 1979976 1982853 . + . gene_id "RvY_11679"; transcript_id "RvY_11679.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1979976 1980708 . + . gene_id "RvY_11679"; transcript_id "RvY_11679.1"; Scaffold006 rebuild exon 1982303 1982853 . + . gene_id "RvY_11679"; transcript_id "RvY_11679.1"; Scaffold006 rebuild transcript 1983507 1986149 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; gene_name "GLB1"; annotation "putative Beta-galactosidase"; Pfam "[Glyco_hydro_42] Beta-galactosidase|[Glyco_hydro_35] Glycosyl hydrolases family 35"; EC "EC3.2.1.23"; KO "K12309"; similar_genes "BGAL_MOUSE(e-value:3.2e-33;bit-score:139.0)"; Scaffold006 rebuild exon 1983507 1983662 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1983770 1983829 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1983899 1984534 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1984612 1984885 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1984960 1985210 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1985284 1985442 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1985554 1985704 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1985824 1985984 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild exon 1986054 1986149 . - . gene_id "RvY_11680"; transcript_id "RvY_11680.1"; Scaffold006 rebuild transcript 1986594 1987889 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1986594 1986618 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.1"; Scaffold006 rebuild exon 1986715 1986759 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.1"; Scaffold006 rebuild exon 1986858 1987052 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.1"; Scaffold006 rebuild exon 1987162 1987889 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.1"; Scaffold006 rebuild transcript 1986696 1987889 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1986696 1986759 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.2"; Scaffold006 rebuild exon 1986858 1987052 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.2"; Scaffold006 rebuild exon 1987162 1987889 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.2"; Scaffold006 rebuild transcript 1986872 1987889 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1986872 1987052 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.3"; Scaffold006 rebuild exon 1987162 1987889 . + . gene_id "RvY_11681"; transcript_id "RvY_11681.3"; Scaffold006 rebuild transcript 1989395 1990764 . + . gene_id "RvY_11682"; transcript_id "RvY_11682.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 1989395 1989461 . + . gene_id "RvY_11682"; transcript_id "RvY_11682.1"; Scaffold006 rebuild exon 1989554 1989745 . + . gene_id "RvY_11682"; transcript_id "RvY_11682.1"; Scaffold006 rebuild exon 1989818 1990054 . + . gene_id "RvY_11682"; transcript_id "RvY_11682.1"; Scaffold006 rebuild exon 1990130 1990330 . + . gene_id "RvY_11682"; transcript_id "RvY_11682.1"; Scaffold006 rebuild exon 1990421 1990764 . + . gene_id "RvY_11682"; transcript_id "RvY_11682.1"; Scaffold006 rebuild transcript 1997100 1999197 . - . gene_id "RvY_11683"; transcript_id "RvY_11683.1"; gene_name "NKX2-2"; annotation "putative Homeobox protein vnd"; Pfam "[Homeobox]"; KO "K08029"; similar_genes "VND_DROME(e-value:1.2e-26;bit-score:118.0)"; Scaffold006 rebuild exon 1997100 1997579 . - . gene_id "RvY_11683"; transcript_id "RvY_11683.1"; Scaffold006 rebuild exon 1997876 1998444 . - . gene_id "RvY_11683"; transcript_id "RvY_11683.1"; Scaffold006 rebuild exon 1998786 1999197 . - . gene_id "RvY_11683"; transcript_id "RvY_11683.1"; Scaffold006 rebuild transcript 2000027 2000449 . + . gene_id "RvY_11684"; transcript_id "RvY_11684.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2000027 2000170 . + . gene_id "RvY_11684"; transcript_id "RvY_11684.1"; Scaffold006 rebuild exon 2000420 2000449 . + . gene_id "RvY_11684"; transcript_id "RvY_11684.1"; Scaffold006 rebuild transcript 2003829 2004089 . - . gene_id "RvY_11685"; transcript_id "RvY_11685.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2003829 2004089 . - . gene_id "RvY_11685"; transcript_id "RvY_11685.1"; Scaffold006 rebuild transcript 2005205 2006106 . + . gene_id "RvY_11686"; transcript_id "RvY_11686.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2005205 2005285 . + . gene_id "RvY_11686"; transcript_id "RvY_11686.1"; Scaffold006 rebuild exon 2005918 2006106 . + . gene_id "RvY_11686"; transcript_id "RvY_11686.1"; Scaffold006 rebuild transcript 2006674 2007270 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 2006674 2007270 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.1"; Scaffold006 rebuild transcript 2006636 2007270 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.2"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 2006636 2006642 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.2"; Scaffold006 rebuild exon 2006753 2007270 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.2"; Scaffold006 rebuild transcript 2006203 2006798 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.3"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 2006203 2006370 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.3"; Scaffold006 rebuild exon 2006512 2006642 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.3"; Scaffold006 rebuild exon 2006753 2006798 . + . gene_id "RvY_11687"; transcript_id "RvY_11687.3"; Scaffold006 rebuild transcript 2007794 2008288 . + . gene_id "RvY_11688"; transcript_id "RvY_11688.1"; gene_name "dnaK"; annotation "hypothetical protein."; Pfam "[HSP70] Hsp70 protein"; CDD "molecular chaperone DnaK; Provisional"; Scaffold006 rebuild exon 2007794 2008288 . + . gene_id "RvY_11688"; transcript_id "RvY_11688.1"; Scaffold006 rebuild transcript 2008378 2009512 . + . gene_id "RvY_11689"; transcript_id "RvY_11689.1"; gene_name "PTZ00009"; annotation "hypothetical protein."; Pfam "[HSP70] Hsp70 protein"; CDD "heat shock 70 kDa protein; Provisional"; Scaffold006 rebuild exon 2008378 2008543 . + . gene_id "RvY_11689"; transcript_id "RvY_11689.1"; Scaffold006 rebuild exon 2009325 2009512 . + . gene_id "RvY_11689"; transcript_id "RvY_11689.1"; Scaffold006 rebuild transcript 2009616 2010263 . + . gene_id "RvY_11690"; transcript_id "RvY_11690.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 2009616 2010263 . + . gene_id "RvY_11690"; transcript_id "RvY_11690.1"; Scaffold006 rebuild transcript 2010952 2011194 . + . gene_id "RvY_11691"; transcript_id "RvY_11691.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2010952 2011194 . + . gene_id "RvY_11691"; transcript_id "RvY_11691.1"; Scaffold006 rebuild transcript 2012888 2013258 . + . gene_id "RvY_11692"; transcript_id "RvY_11692.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2012888 2013005 . + . gene_id "RvY_11692"; transcript_id "RvY_11692.1"; Scaffold006 rebuild exon 2013068 2013258 . + . gene_id "RvY_11692"; transcript_id "RvY_11692.1"; Scaffold006 rebuild transcript 2013422 2014423 . + . gene_id "RvY_11693"; transcript_id "RvY_11693.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 2013422 2013654 . + . gene_id "RvY_11693"; transcript_id "RvY_11693.1"; Scaffold006 rebuild exon 2013751 2014423 . + . gene_id "RvY_11693"; transcript_id "RvY_11693.1"; Scaffold006 rebuild transcript 2015927 2016445 . - . gene_id "RvY_11694"; transcript_id "RvY_11694.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2015927 2016445 . - . gene_id "RvY_11694"; transcript_id "RvY_11694.1"; Scaffold006 rebuild transcript 2019899 2020509 . + . gene_id "RvY_11695"; transcript_id "RvY_11695.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2019899 2020153 . + . gene_id "RvY_11695"; transcript_id "RvY_11695.1"; Scaffold006 rebuild exon 2020420 2020509 . + . gene_id "RvY_11695"; transcript_id "RvY_11695.1"; Scaffold006 rebuild transcript 2022765 2023115 . + . gene_id "RvY_11696"; transcript_id "RvY_11696.1"; gene_name "DnaK"; annotation "hypothetical protein."; Pfam "[HSP70] Hsp70 protein"; CDD "Molecular chaperone [Posttranslational modification, protein turnover, chaperones]"; Scaffold006 rebuild exon 2022765 2023115 . + . gene_id "RvY_11696"; transcript_id "RvY_11696.1"; Scaffold006 framed transcript 2023394 2023705 . - . gene_id "RvY_11697"; transcript_id "RvY_11697.1"; annotation "hypothetical protein."; Scaffold006 framed exon 2023394 2023705 . - . gene_id "RvY_11697"; transcript_id "RvY_11697.1"; Scaffold006 rebuild transcript 2023843 2024286 . - . gene_id "RvY_11697"; transcript_id "RvY_11697.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2023843 2024286 . - . gene_id "RvY_11697"; transcript_id "RvY_11697.2"; Scaffold006 rebuild transcript 2023574 2024140 . + . gene_id "RvY_11698"; transcript_id "RvY_11698.1"; annotation "hypothetical protein."; Pfam "[HSP70] Hsp70 protein"; Scaffold006 rebuild exon 2023574 2024140 . + . gene_id "RvY_11698"; transcript_id "RvY_11698.1"; Scaffold006 rebuild transcript 2025873 2028018 . - . gene_id "RvY_11699"; transcript_id "RvY_11699.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2025873 2026111 . - . gene_id "RvY_11699"; transcript_id "RvY_11699.1"; Scaffold006 rebuild exon 2026203 2026517 . - . gene_id "RvY_11699"; transcript_id "RvY_11699.1"; Scaffold006 rebuild exon 2026542 2026578 . - . gene_id "RvY_11699"; transcript_id "RvY_11699.1"; Scaffold006 rebuild exon 2027497 2028018 . - . gene_id "RvY_11699"; transcript_id "RvY_11699.1"; Scaffold006 rebuild transcript 2029018 2030187 . + . gene_id "RvY_11700"; transcript_id "RvY_11700.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2029018 2029288 . + . gene_id "RvY_11700"; transcript_id "RvY_11700.1"; Scaffold006 rebuild exon 2029366 2029539 . + . gene_id "RvY_11700"; transcript_id "RvY_11700.1"; Scaffold006 rebuild exon 2029630 2029721 . + . gene_id "RvY_11700"; transcript_id "RvY_11700.1"; Scaffold006 rebuild exon 2030131 2030187 . + . gene_id "RvY_11700"; transcript_id "RvY_11700.1"; Scaffold006 rebuild transcript 2030396 2031589 . - . gene_id "RvY_11701"; transcript_id "RvY_11701.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2030396 2030837 . - . gene_id "RvY_11701"; transcript_id "RvY_11701.1"; Scaffold006 rebuild exon 2031051 2031589 . - . gene_id "RvY_11701"; transcript_id "RvY_11701.1"; Scaffold006 rebuild transcript 2032073 2034480 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; product "SIRT1"; gene_name "SIRT1"; annotation "SIRT1 | NAD-dependent deacetylase SIR2 homolog"; Pfam "[SIR2] Sir2 family"; CDD "SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity."; EC "EC3.5.1.-"; KO "K11411"; similar_genes "SIRT1_CAEBR(e-value:2.5e-52;bit-score:203.0)"; Scaffold006 rebuild exon 2032073 2032290 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2032355 2032561 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2032646 2032732 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2032849 2033035 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2033103 2033330 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2033404 2033556 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2033849 2034264 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild exon 2034432 2034480 . - . gene_id "RvY_11702"; transcript_id "RvY_11702.1"; Scaffold006 rebuild transcript 2034596 2035015 . - . gene_id "RvY_11703"; transcript_id "RvY_11703.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2034596 2035015 . - . gene_id "RvY_11703"; transcript_id "RvY_11703.1"; Scaffold006 rebuild transcript 2036162 2036697 . + . gene_id "RvY_11704"; transcript_id "RvY_11704.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2036162 2036436 . + . gene_id "RvY_11704"; transcript_id "RvY_11704.1"; Scaffold006 rebuild exon 2036571 2036697 . + . gene_id "RvY_11704"; transcript_id "RvY_11704.1"; Scaffold006 rebuild transcript 2036915 2037331 . + . gene_id "RvY_11705"; transcript_id "RvY_11705.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold006 rebuild exon 2036915 2037331 . + . gene_id "RvY_11705"; transcript_id "RvY_11705.1"; Scaffold006 rebuild transcript 2038578 2039342 . + . gene_id "RvY_11706"; transcript_id "RvY_11706.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; Scaffold006 rebuild exon 2038578 2039342 . + . gene_id "RvY_11706"; transcript_id "RvY_11706.1"; Scaffold006 rebuild transcript 2039434 2039862 . + . gene_id "RvY_11707"; transcript_id "RvY_11707.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; Scaffold006 rebuild exon 2039434 2039862 . + . gene_id "RvY_11707"; transcript_id "RvY_11707.1"; Scaffold006 rebuild transcript 2040136 2043832 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; gene_name "K08252"; annotation "putative Tyrosine kinase receptor Cad96Ca"; Pfam "[APH] Phosphotransferase enzyme family|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; KO "K08252"; similar_genes "CAD96_DROME(e-value:2.2e-38;bit-score:157.0)"; Scaffold006 rebuild exon 2040136 2040666 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2040724 2040908 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2040989 2041105 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2041208 2041388 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2041526 2041657 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2041743 2042192 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2042355 2042405 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2043251 2043522 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2043616 2043672 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild exon 2043775 2043832 . - . gene_id "RvY_11708"; transcript_id "RvY_11708.1"; Scaffold006 rebuild transcript 2045799 2046408 . + . gene_id "RvY_11709"; transcript_id "RvY_11709.1"; gene_name "PTZ00018"; annotation "hypothetical protein."; Pfam "[Histone] Core histone H2A/H2B/H3/H4"; CDD "histone 3; Provisional"; similar_genes "H3_DROME(e-value:1.8e-14;bit-score:77.0)"; Scaffold006 rebuild exon 2045799 2046041 . + . gene_id "RvY_11709"; transcript_id "RvY_11709.1"; Scaffold006 rebuild exon 2046268 2046408 . + . gene_id "RvY_11709"; transcript_id "RvY_11709.1"; Scaffold006 rebuild transcript 2048032 2059534 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; product "TOR"; gene_name "FRAP"; annotation "TOR | Target of rapamycin"; Pfam "[FAT]|[UME] UME (NUC010) domain|[Rapamycin_bind] Rapamycin binding domain|[FATC]|[HEAT_2] HEAT repeats|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase|[HEAT_EZ] HEAT-like repeat|[DUF3385]"; CDD "Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]"; EC "EC2.7.1.-"; KO "K07203"; similar_genes "TOR_DROME(e-value:9.7e-160;bit-score:560.0)"; Scaffold006 rebuild exon 2048032 2048254 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2048318 2048697 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2048768 2049005 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2049343 2049651 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2049876 2050107 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2050177 2050469 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2050710 2050953 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2051072 2051387 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2051578 2051785 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2051850 2052106 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2052387 2052705 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2052987 2053266 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2053377 2053657 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2053995 2054277 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2054349 2054511 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2054609 2054893 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2055181 2055693 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2055820 2056139 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2056215 2056293 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2056634 2057560 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2057836 2058146 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2058211 2058358 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2058436 2058558 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2058768 2059216 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild exon 2059273 2059534 . + . gene_id "RvY_11710"; transcript_id "RvY_11710.1"; Scaffold006 rebuild transcript 2061472 2061972 . - . gene_id "RvY_11711"; transcript_id "RvY_11711.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold006 rebuild exon 2061472 2061834 . - . gene_id "RvY_11711"; transcript_id "RvY_11711.1"; Scaffold006 rebuild exon 2061916 2061972 . - . gene_id "RvY_11711"; transcript_id "RvY_11711.1"; Scaffold006 rebuild transcript 2062486 2062653 . - . gene_id "RvY_11712"; transcript_id "RvY_11712.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2062486 2062653 . - . gene_id "RvY_11712"; transcript_id "RvY_11712.1"; Scaffold006 rebuild transcript 2063241 2063708 . - . gene_id "RvY_11713"; transcript_id "RvY_11713.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2063241 2063708 . - . gene_id "RvY_11713"; transcript_id "RvY_11713.1"; Scaffold006 rebuild transcript 2066447 2067202 . - . gene_id "RvY_11714"; transcript_id "RvY_11714.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2066447 2066607 . - . gene_id "RvY_11714"; transcript_id "RvY_11714.1"; Scaffold006 rebuild exon 2067184 2067202 . - . gene_id "RvY_11714"; transcript_id "RvY_11714.1"; Scaffold006 rebuild transcript 2071712 2073680 . - . gene_id "RvY_11715"; transcript_id "RvY_11715.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2071712 2072871 . - . gene_id "RvY_11715"; transcript_id "RvY_11715.1"; Scaffold006 rebuild exon 2072993 2073269 . - . gene_id "RvY_11715"; transcript_id "RvY_11715.1"; Scaffold006 rebuild exon 2073354 2073547 . - . gene_id "RvY_11715"; transcript_id "RvY_11715.1"; Scaffold006 rebuild exon 2073626 2073680 . - . gene_id "RvY_11715"; transcript_id "RvY_11715.1"; Scaffold006 rebuild transcript 2075243 2075446 . - . gene_id "RvY_11716"; transcript_id "RvY_11716.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2075243 2075446 . - . gene_id "RvY_11716"; transcript_id "RvY_11716.1"; Scaffold006 rebuild transcript 2076388 2076795 . - . gene_id "RvY_11717"; transcript_id "RvY_11717.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2076388 2076795 . - . gene_id "RvY_11717"; transcript_id "RvY_11717.1"; Scaffold006 rebuild transcript 2077135 2078226 . - . gene_id "RvY_11718"; transcript_id "RvY_11718.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold006 rebuild exon 2077135 2077869 . - . gene_id "RvY_11718"; transcript_id "RvY_11718.1"; Scaffold006 rebuild exon 2078182 2078226 . - . gene_id "RvY_11718"; transcript_id "RvY_11718.1"; Scaffold006 rebuild transcript 2079731 2080213 . + . gene_id "RvY_11719"; transcript_id "RvY_11719.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2079731 2079774 . + . gene_id "RvY_11719"; transcript_id "RvY_11719.1"; Scaffold006 rebuild exon 2079855 2079963 . + . gene_id "RvY_11719"; transcript_id "RvY_11719.1"; Scaffold006 rebuild exon 2080037 2080213 . + . gene_id "RvY_11719"; transcript_id "RvY_11719.1"; Scaffold006 rebuild transcript 2080478 2080798 . + . gene_id "RvY_11720"; transcript_id "RvY_11720.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2080478 2080798 . + . gene_id "RvY_11720"; transcript_id "RvY_11720.1"; Scaffold006 rebuild transcript 2080993 2081337 . + . gene_id "RvY_11721"; transcript_id "RvY_11721.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold006 rebuild exon 2080993 2081337 . + . gene_id "RvY_11721"; transcript_id "RvY_11721.1"; Scaffold006 rebuild transcript 2081473 2082148 . + . gene_id "RvY_11722"; transcript_id "RvY_11722.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold006 rebuild exon 2081473 2081633 . + . gene_id "RvY_11722"; transcript_id "RvY_11722.1"; Scaffold006 rebuild exon 2081824 2082148 . + . gene_id "RvY_11722"; transcript_id "RvY_11722.1"; Scaffold006 rebuild transcript 2083163 2084517 . + . gene_id "RvY_11723"; transcript_id "RvY_11723.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2083163 2083184 . + . gene_id "RvY_11723"; transcript_id "RvY_11723.1"; Scaffold006 rebuild exon 2084177 2084517 . + . gene_id "RvY_11723"; transcript_id "RvY_11723.1"; Scaffold006 rebuild transcript 2084994 2085606 . - . gene_id "RvY_11724"; transcript_id "RvY_11724.1"; annotation "hypothetical protein."; similar_genes "FARP1_PONAB(e-value:1.8e-10;bit-score:64.0)"; Scaffold006 rebuild exon 2084994 2085152 . - . gene_id "RvY_11724"; transcript_id "RvY_11724.1"; Scaffold006 rebuild exon 2085328 2085455 . - . gene_id "RvY_11724"; transcript_id "RvY_11724.1"; Scaffold006 rebuild exon 2085570 2085606 . - . gene_id "RvY_11724"; transcript_id "RvY_11724.1"; Scaffold006 rebuild transcript 2088787 2089809 . - . gene_id "RvY_11725"; transcript_id "RvY_11725.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2088787 2089017 . - . gene_id "RvY_11725"; transcript_id "RvY_11725.1"; Scaffold006 rebuild exon 2089798 2089809 . - . gene_id "RvY_11725"; transcript_id "RvY_11725.1"; Scaffold006 rebuild transcript 2095951 2096696 . - . gene_id "RvY_11726"; transcript_id "RvY_11726.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2095951 2096136 . - . gene_id "RvY_11726"; transcript_id "RvY_11726.1"; Scaffold006 rebuild exon 2096613 2096696 . - . gene_id "RvY_11726"; transcript_id "RvY_11726.1"; Scaffold006 rebuild transcript 2097695 2098105 . - . gene_id "RvY_11727"; transcript_id "RvY_11727.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2097695 2098105 . - . gene_id "RvY_11727"; transcript_id "RvY_11727.1"; Scaffold006 rebuild transcript 2098470 2100689 . - . gene_id "RvY_11728"; transcript_id "RvY_11728.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold006 rebuild exon 2098470 2100172 . - . gene_id "RvY_11728"; transcript_id "RvY_11728.1"; Scaffold006 rebuild exon 2100395 2100689 . - . gene_id "RvY_11728"; transcript_id "RvY_11728.1"; Scaffold006 rebuild transcript 2103231 2104184 . - . gene_id "RvY_11729"; transcript_id "RvY_11729.1"; gene_name "FOXG"; annotation "Forkhead box protein G1"; Pfam "[Fork_head] Fork head domain"; KO "K09385"; similar_genes "FOXG1_RAT(e-value:2.1e-51;bit-score:200.0)"; Scaffold006 rebuild exon 2103231 2104184 . - . gene_id "RvY_11729"; transcript_id "RvY_11729.1"; Scaffold006 rebuild transcript 2108619 2109935 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.1"; gene_name "RPB4"; annotation "putative DNA-directed RNA polymerase II 16 kDa polypeptide"; Pfam "[RNA_pol_Rpb4] RNA polymerase Rpb4"; EC "EC2.7.7.6"; KO "K03012"; similar_genes "RPB4_DROME(e-value:6.8e-27;bit-score:118.0)"; Scaffold006 rebuild exon 2108619 2108744 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.1"; Scaffold006 rebuild exon 2109497 2109718 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.1"; Scaffold006 rebuild exon 2109780 2109935 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.1"; Scaffold006 rebuild transcript 2109434 2109935 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.2"; gene_name "RPB4"; annotation "putative DNA-directed RNA polymerase II 16 kDa polypeptide"; Pfam "[RNA_pol_Rpb4] RNA polymerase Rpb4"; EC "EC2.7.7.6"; KO "K03012"; similar_genes "RPB4_DROME(e-value:6.8e-27;bit-score:118.0)"; Scaffold006 rebuild exon 2109434 2109718 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.2"; Scaffold006 rebuild exon 2109780 2109935 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.2"; Scaffold006 rebuild transcript 2109359 2109935 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.3"; gene_name "RPB4"; annotation "putative DNA-directed RNA polymerase II 16 kDa polypeptide"; Pfam "[RNA_pol_Rpb4] RNA polymerase Rpb4"; EC "EC2.7.7.6"; KO "K03012"; similar_genes "RPB4_DROME(e-value:6.8e-27;bit-score:118.0)"; Scaffold006 rebuild exon 2109359 2109403 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.3"; Scaffold006 rebuild exon 2109497 2109718 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.3"; Scaffold006 rebuild exon 2109780 2109935 . - . gene_id "RvY_11730"; transcript_id "RvY_11730.3"; Scaffold006 rebuild transcript 2110633 2116852 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; gene_name "K01099"; annotation "putative Synaptojanin-1"; Pfam "[Syja_N] SacI homology domain|[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family|[DUF1866]"; CDD "Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes."; EC "EC3.1.3.36"; KO "K01099"; similar_genes "SYNJ1_HUMAN(e-value:3.6e-49;bit-score:192.0)"; Scaffold006 rebuild exon 2110633 2110771 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2110910 2110996 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2111081 2111381 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2111510 2111735 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2111803 2111886 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2111972 2112130 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2112190 2112447 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2112700 2113009 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2113202 2113493 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2113733 2114066 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2114333 2114636 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2115394 2115670 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2115734 2115999 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2116258 2116647 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild exon 2116704 2116852 . + . gene_id "RvY_11731"; transcript_id "RvY_11731.1"; Scaffold006 rebuild transcript 2116333 2116884 . - . gene_id "RvY_11732"; transcript_id "RvY_11732.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2116333 2116884 . - . gene_id "RvY_11732"; transcript_id "RvY_11732.1"; Scaffold006 rebuild transcript 2118412 2120218 . + . gene_id "RvY_11733"; transcript_id "RvY_11733.1"; annotation "hypothetical protein."; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; similar_genes "SIDT1_MOUSE(e-value:2.1e-13;bit-score:74.0)"; Scaffold006 rebuild exon 2118412 2119024 . + . gene_id "RvY_11733"; transcript_id "RvY_11733.1"; Scaffold006 rebuild exon 2119653 2120218 . + . gene_id "RvY_11733"; transcript_id "RvY_11733.1"; Scaffold006 rebuild transcript 2121421 2122700 . + . gene_id "RvY_11734"; transcript_id "RvY_11734.1"; annotation "hypothetical protein."; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; Scaffold006 rebuild exon 2121421 2121643 . + . gene_id "RvY_11734"; transcript_id "RvY_11734.1"; Scaffold006 rebuild exon 2122411 2122700 . + . gene_id "RvY_11734"; transcript_id "RvY_11734.1"; Scaffold006 rebuild transcript 2122878 2124631 . - . gene_id "RvY_11735"; transcript_id "RvY_11735.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold006 rebuild exon 2122878 2123374 . - . gene_id "RvY_11735"; transcript_id "RvY_11735.1"; Scaffold006 rebuild exon 2123466 2123581 . - . gene_id "RvY_11735"; transcript_id "RvY_11735.1"; Scaffold006 rebuild exon 2123664 2123749 . - . gene_id "RvY_11735"; transcript_id "RvY_11735.1"; Scaffold006 rebuild exon 2123842 2123993 . - . gene_id "RvY_11735"; transcript_id "RvY_11735.1"; Scaffold006 rebuild exon 2124055 2124631 . - . gene_id "RvY_11735"; transcript_id "RvY_11735.1"; Scaffold006 rebuild transcript 2125295 2127532 . - . gene_id "RvY_11736"; transcript_id "RvY_11736.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2125295 2125299 . - . gene_id "RvY_11736"; transcript_id "RvY_11736.1"; Scaffold006 rebuild exon 2125499 2126086 . - . gene_id "RvY_11736"; transcript_id "RvY_11736.1"; Scaffold006 rebuild exon 2126934 2127351 . - . gene_id "RvY_11736"; transcript_id "RvY_11736.1"; Scaffold006 rebuild exon 2127434 2127532 . - . gene_id "RvY_11736"; transcript_id "RvY_11736.1"; Scaffold006 rebuild transcript 2128821 2129849 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2128821 2129849 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.1"; Scaffold006 rebuild transcript 2128394 2129619 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2128394 2128430 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.2"; Scaffold006 rebuild exon 2128569 2128768 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.2"; Scaffold006 rebuild exon 2128839 2129492 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.2"; Scaffold006 rebuild exon 2129566 2129619 . + . gene_id "RvY_11737"; transcript_id "RvY_11737.2"; Scaffold006 rebuild transcript 2130932 2131279 . + . gene_id "RvY_11738"; transcript_id "RvY_11738.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2130932 2131279 . + . gene_id "RvY_11738"; transcript_id "RvY_11738.1"; Scaffold006 rebuild transcript 2136225 2136413 . + . gene_id "RvY_11739"; transcript_id "RvY_11739.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2136225 2136413 . + . gene_id "RvY_11739"; transcript_id "RvY_11739.1"; Scaffold006 rebuild transcript 2139167 2144138 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; gene_name "MRP_assoc_pro"; annotation "Multidrug resistance-associated protein 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_29] P-loop containing region of AAA domain|[AAA_25] AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; similar_genes "MRP1_BOVIN(e-value:4.6e-98;bit-score:355.0)"; Scaffold006 rebuild exon 2139167 2139264 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2139335 2139435 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2139506 2139672 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2139759 2140571 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2140641 2140715 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2140797 2140963 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2141033 2141287 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2141352 2141842 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2141913 2142454 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2142521 2142559 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2142618 2142678 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2142881 2143038 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2143121 2143252 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2143327 2143371 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2143436 2143675 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2143739 2143886 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild exon 2143960 2144138 . - . gene_id "RvY_11740"; transcript_id "RvY_11740.1"; Scaffold006 rebuild transcript 2144415 2145519 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.1"; gene_name "MRP_assoc_pro"; annotation "hypothetical protein."; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; Scaffold006 rebuild exon 2144415 2144439 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.1"; Scaffold006 rebuild exon 2144526 2144722 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.1"; Scaffold006 rebuild exon 2144800 2144937 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.1"; Scaffold006 rebuild exon 2145037 2145171 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.1"; Scaffold006 rebuild exon 2145280 2145519 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.1"; Scaffold006 rebuild transcript 2144475 2145519 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.2"; gene_name "MRP_assoc_pro"; annotation "hypothetical protein."; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; Scaffold006 rebuild exon 2144475 2144543 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.2"; Scaffold006 rebuild exon 2144606 2144722 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.2"; Scaffold006 rebuild exon 2144800 2144937 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.2"; Scaffold006 rebuild exon 2145037 2145171 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.2"; Scaffold006 rebuild exon 2145280 2145519 . - . gene_id "RvY_11741"; transcript_id "RvY_11741.2"; Scaffold006 rebuild transcript 2146041 2146355 . + . gene_id "RvY_11742"; transcript_id "RvY_11742.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2146041 2146355 . + . gene_id "RvY_11742"; transcript_id "RvY_11742.1"; Scaffold006 rebuild transcript 2147606 2147776 . - . gene_id "RvY_11744"; transcript_id "RvY_11744.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2147606 2147776 . - . gene_id "RvY_11744"; transcript_id "RvY_11744.1"; Scaffold006 rebuild transcript 2149354 2150278 . - . gene_id "RvY_11745"; transcript_id "RvY_11745.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; Scaffold006 rebuild exon 2149354 2149354 . - . gene_id "RvY_11745"; transcript_id "RvY_11745.1"; Scaffold006 rebuild exon 2149438 2149966 . - . gene_id "RvY_11745"; transcript_id "RvY_11745.1"; Scaffold006 rebuild exon 2150035 2150278 . - . gene_id "RvY_11745"; transcript_id "RvY_11745.1"; Scaffold006 rebuild transcript 2151718 2152552 . - . gene_id "RvY_11746"; transcript_id "RvY_11746.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold006 rebuild exon 2151718 2151913 . - . gene_id "RvY_11746"; transcript_id "RvY_11746.1"; Scaffold006 rebuild exon 2151975 2152552 . - . gene_id "RvY_11746"; transcript_id "RvY_11746.1"; Scaffold006 rebuild transcript 2155718 2155930 . + . gene_id "RvY_11747"; transcript_id "RvY_11747.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2155718 2155930 . + . gene_id "RvY_11747"; transcript_id "RvY_11747.1"; Scaffold006 rebuild transcript 2156560 2156802 . - . gene_id "RvY_11748"; transcript_id "RvY_11748.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2156560 2156802 . - . gene_id "RvY_11748"; transcript_id "RvY_11748.1"; Scaffold006 rebuild transcript 2158461 2159684 . + . gene_id "RvY_11749"; transcript_id "RvY_11749.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2158461 2158566 . + . gene_id "RvY_11749"; transcript_id "RvY_11749.1"; Scaffold006 rebuild exon 2158988 2159497 . + . gene_id "RvY_11749"; transcript_id "RvY_11749.1"; Scaffold006 rebuild exon 2159566 2159684 . + . gene_id "RvY_11749"; transcript_id "RvY_11749.1"; Scaffold006 rebuild transcript 2159745 2160994 . + . gene_id "RvY_11750"; transcript_id "RvY_11750.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2159745 2159887 . + . gene_id "RvY_11750"; transcript_id "RvY_11750.1"; Scaffold006 rebuild exon 2160568 2160994 . + . gene_id "RvY_11750"; transcript_id "RvY_11750.1"; Scaffold006 rebuild transcript 2162133 2165191 . - . gene_id "RvY_11751"; transcript_id "RvY_11751.1"; gene_name "MoeA"; annotation "putative Gephyrin"; Pfam "[MoeA_C] MoeA C-terminal region (domain IV)|[MoeA_N] MoeA N-terminal region (domain I and II)|[MoCF_biosynth] Probable molybdopterin binding domain"; CDD "MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes."; EC "EC2.7.7.n5"; KO "K15376"; similar_genes "GEPH_RAT(e-value:6.0e-28;bit-score:122.0)"; Scaffold006 rebuild exon 2162133 2163023 . - . gene_id "RvY_11751"; transcript_id "RvY_11751.1"; Scaffold006 rebuild exon 2163886 2164151 . - . gene_id "RvY_11751"; transcript_id "RvY_11751.1"; Scaffold006 rebuild exon 2164333 2164786 . - . gene_id "RvY_11751"; transcript_id "RvY_11751.1"; Scaffold006 rebuild exon 2164928 2165191 . - . gene_id "RvY_11751"; transcript_id "RvY_11751.1"; Scaffold006 rebuild transcript 2165526 2166014 . + . gene_id "RvY_11752"; transcript_id "RvY_11752.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2165526 2166014 . + . gene_id "RvY_11752"; transcript_id "RvY_11752.1"; Scaffold006 rebuild transcript 2169422 2169700 . + . gene_id "RvY_11753"; transcript_id "RvY_11753.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2169422 2169700 . + . gene_id "RvY_11753"; transcript_id "RvY_11753.1"; Scaffold006 rebuild transcript 2171820 2174206 . + . gene_id "RvY_11754"; transcript_id "RvY_11754.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K14072"; similar_genes "NPYR_DROME(e-value:4.3e-20;bit-score:96.0)"; Scaffold006 rebuild exon 2171820 2172226 . + . gene_id "RvY_11754"; transcript_id "RvY_11754.1"; Scaffold006 rebuild exon 2172517 2172970 . + . gene_id "RvY_11754"; transcript_id "RvY_11754.1"; Scaffold006 rebuild exon 2173102 2173244 . + . gene_id "RvY_11754"; transcript_id "RvY_11754.1"; Scaffold006 rebuild exon 2173418 2173475 . + . gene_id "RvY_11754"; transcript_id "RvY_11754.1"; Scaffold006 rebuild exon 2173796 2174206 . + . gene_id "RvY_11754"; transcript_id "RvY_11754.1"; Scaffold006 rebuild transcript 2174551 2176434 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; gene_name "LGMN"; annotation "putative Legumain"; Pfam "[Peptidase_C13] Peptidase C13 family"; EC "EC3.4.22.34"; KO "K01369"; similar_genes "LGMN_MOUSE(e-value:4.7e-49;bit-score:192.0)"; Scaffold006 rebuild exon 2174551 2174598 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2174665 2174745 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2174826 2174996 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2175055 2175383 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2175453 2175498 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2175560 2175829 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2175891 2175974 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2176040 2176094 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild exon 2176154 2176434 . - . gene_id "RvY_11755"; transcript_id "RvY_11755.1"; Scaffold006 rebuild transcript 2176213 2176410 . + . gene_id "RvY_11756"; transcript_id "RvY_11756.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2176213 2176410 . + . gene_id "RvY_11756"; transcript_id "RvY_11756.1"; Scaffold006 rebuild transcript 2177148 2179248 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; annotation "Selenium-binding protein 1"; Pfam "[SBP56] 56kDa selenium binding protein (SBP56)"; similar_genes "SBP1_BOVIN(e-value:1.0e-59;bit-score:227.0)"; Scaffold006 rebuild exon 2177148 2177304 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild exon 2177387 2177491 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild exon 2177574 2177680 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild exon 2177766 2177887 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild exon 2177966 2178044 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild exon 2178132 2178502 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild exon 2178774 2179248 . - . gene_id "RvY_11757"; transcript_id "RvY_11757.1"; Scaffold006 rebuild transcript 2181152 2181400 . + . gene_id "RvY_11758"; transcript_id "RvY_11758.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2181152 2181400 . + . gene_id "RvY_11758"; transcript_id "RvY_11758.1"; Scaffold006 rebuild transcript 2181697 2181870 . + . gene_id "RvY_11759"; transcript_id "RvY_11759.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2181697 2181870 . + . gene_id "RvY_11759"; transcript_id "RvY_11759.1"; Scaffold006 rebuild transcript 2182192 2182842 . - . gene_id "RvY_11760"; transcript_id "RvY_11760.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2182192 2182269 . - . gene_id "RvY_11760"; transcript_id "RvY_11760.1"; Scaffold006 rebuild exon 2182738 2182842 . - . gene_id "RvY_11760"; transcript_id "RvY_11760.1"; Scaffold006 rebuild transcript 2183619 2184735 . + . gene_id "RvY_11761"; transcript_id "RvY_11761.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2183619 2183679 . + . gene_id "RvY_11761"; transcript_id "RvY_11761.1"; Scaffold006 rebuild exon 2183790 2183974 . + . gene_id "RvY_11761"; transcript_id "RvY_11761.1"; Scaffold006 rebuild exon 2184058 2184322 . + . gene_id "RvY_11761"; transcript_id "RvY_11761.1"; Scaffold006 rebuild exon 2184395 2184735 . + . gene_id "RvY_11761"; transcript_id "RvY_11761.1"; Scaffold006 rebuild transcript 2185151 2185690 . + . gene_id "RvY_11762"; transcript_id "RvY_11762.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2185151 2185188 . + . gene_id "RvY_11762"; transcript_id "RvY_11762.1"; Scaffold006 rebuild exon 2185387 2185690 . + . gene_id "RvY_11762"; transcript_id "RvY_11762.1"; Scaffold006 rebuild transcript 2188273 2188806 . + . gene_id "RvY_11763"; transcript_id "RvY_11763.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2188273 2188441 . + . gene_id "RvY_11763"; transcript_id "RvY_11763.1"; Scaffold006 rebuild exon 2188625 2188806 . + . gene_id "RvY_11763"; transcript_id "RvY_11763.1"; Scaffold006 rebuild transcript 2189660 2190025 . + . gene_id "RvY_11764"; transcript_id "RvY_11764.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2189660 2190025 . + . gene_id "RvY_11764"; transcript_id "RvY_11764.1"; Scaffold006 rebuild transcript 2201112 2201237 . + . gene_id "RvY_11765"; transcript_id "RvY_11765.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2201112 2201237 . + . gene_id "RvY_11765"; transcript_id "RvY_11765.1"; Scaffold006 rebuild transcript 2212372 2212735 . + . gene_id "RvY_11766"; transcript_id "RvY_11766.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2212372 2212451 . + . gene_id "RvY_11766"; transcript_id "RvY_11766.1"; Scaffold006 rebuild exon 2212645 2212735 . + . gene_id "RvY_11766"; transcript_id "RvY_11766.1"; Scaffold006 rebuild transcript 2212791 2217237 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; gene_name "TIR"; annotation "hypothetical protein."; Pfam "[TIR_2] TIR domain|[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[TIR]|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Toll - interleukin 1 - resistance."; Scaffold006 rebuild exon 2212791 2212881 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; Scaffold006 rebuild exon 2213072 2213723 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; Scaffold006 rebuild exon 2213882 2214531 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; Scaffold006 rebuild exon 2214692 2215374 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; Scaffold006 rebuild exon 2215547 2216140 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; Scaffold006 rebuild exon 2216233 2217237 . + . gene_id "RvY_11767"; transcript_id "RvY_11767.1"; Scaffold006 rebuild transcript 2221739 2222278 . + . gene_id "RvY_11768"; transcript_id "RvY_11768.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2221739 2222278 . + . gene_id "RvY_11768"; transcript_id "RvY_11768.1"; Scaffold006 rebuild transcript 2222511 2224031 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2222511 2222683 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.1"; Scaffold006 rebuild exon 2223689 2224031 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.1"; Scaffold006 rebuild transcript 2223579 2224031 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2223579 2224031 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.2"; Scaffold006 rebuild transcript 2223579 2224031 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.3"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2223579 2223844 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.3"; Scaffold006 rebuild exon 2223968 2224031 . - . gene_id "RvY_11769"; transcript_id "RvY_11769.3"; Scaffold006 rebuild transcript 2222583 2222834 . + . gene_id "RvY_11770"; transcript_id "RvY_11770.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2222583 2222834 . + . gene_id "RvY_11770"; transcript_id "RvY_11770.1"; Scaffold006 rebuild transcript 2223854 2224081 . + . gene_id "RvY_11771"; transcript_id "RvY_11771.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2223854 2224081 . + . gene_id "RvY_11771"; transcript_id "RvY_11771.1"; Scaffold006 rebuild transcript 2225797 2226552 . - . gene_id "RvY_11772"; transcript_id "RvY_11772.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2225797 2226115 . - . gene_id "RvY_11772"; transcript_id "RvY_11772.1"; Scaffold006 rebuild exon 2226461 2226552 . - . gene_id "RvY_11772"; transcript_id "RvY_11772.1"; Scaffold006 rebuild transcript 2229230 2229869 . - . gene_id "RvY_11773"; transcript_id "RvY_11773.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2229230 2229582 . - . gene_id "RvY_11773"; transcript_id "RvY_11773.1"; Scaffold006 rebuild exon 2229752 2229869 . - . gene_id "RvY_11773"; transcript_id "RvY_11773.1"; Scaffold006 rebuild transcript 2230179 2230550 . - . gene_id "RvY_11774"; transcript_id "RvY_11774.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2230179 2230550 . - . gene_id "RvY_11774"; transcript_id "RvY_11774.1"; Scaffold006 rebuild transcript 2230658 2234433 . - . gene_id "RvY_11775"; transcript_id "RvY_11775.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2230658 2231178 . - . gene_id "RvY_11775"; transcript_id "RvY_11775.1"; Scaffold006 rebuild exon 2231829 2232494 . - . gene_id "RvY_11775"; transcript_id "RvY_11775.1"; Scaffold006 rebuild exon 2233025 2233541 . - . gene_id "RvY_11775"; transcript_id "RvY_11775.1"; Scaffold006 rebuild exon 2233946 2234232 . - . gene_id "RvY_11775"; transcript_id "RvY_11775.1"; Scaffold006 rebuild exon 2234409 2234433 . - . gene_id "RvY_11775"; transcript_id "RvY_11775.1"; Scaffold006 rebuild transcript 2235683 2235964 . + . gene_id "RvY_11776"; transcript_id "RvY_11776.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2235683 2235964 . + . gene_id "RvY_11776"; transcript_id "RvY_11776.1"; Scaffold006 rebuild transcript 2239160 2239971 . + . gene_id "RvY_11777"; transcript_id "RvY_11777.1"; annotation "putative Membrane-associated progesterone receptor component 2"; Pfam "[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; similar_genes "PGRC2_HUMAN(e-value:1.2e-28;bit-score:124.0)"; Scaffold006 rebuild exon 2239160 2239535 . + . gene_id "RvY_11777"; transcript_id "RvY_11777.1"; Scaffold006 rebuild exon 2239590 2239745 . + . gene_id "RvY_11777"; transcript_id "RvY_11777.1"; Scaffold006 rebuild exon 2239799 2239971 . + . gene_id "RvY_11777"; transcript_id "RvY_11777.1"; Scaffold006 rebuild transcript 2240377 2243720 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; gene_name "SFRS17"; annotation "splicing factor, arginine/serine-rich 17"; CDD "cell envelope integrity inner membrane protein TolA; Provisional"; KO "K13169"; similar_genes "SF17A_HUMAN(e-value:7.4e-20;bit-score:95.0)"; Scaffold006 rebuild exon 2240377 2241300 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; Scaffold006 rebuild exon 2241366 2241594 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; Scaffold006 rebuild exon 2241717 2241865 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; Scaffold006 rebuild exon 2241928 2242536 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; Scaffold006 rebuild exon 2243408 2243659 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; Scaffold006 rebuild exon 2243718 2243720 . - . gene_id "RvY_11778"; transcript_id "RvY_11778.1"; Scaffold006 rebuild transcript 2244020 2244334 . + . gene_id "RvY_11779"; transcript_id "RvY_11779.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2244020 2244334 . + . gene_id "RvY_11779"; transcript_id "RvY_11779.1"; Scaffold006 rebuild transcript 2244956 2246317 . + . gene_id "RvY_11780"; transcript_id "RvY_11780.1"; annotation "hypothetical protein."; Pfam "[MARVEL] Membrane-associating domain"; similar_genes "SNG3_MOUSE(e-value:1.6e-11;bit-score:67.0)"; Scaffold006 rebuild exon 2244956 2245200 . + . gene_id "RvY_11780"; transcript_id "RvY_11780.1"; Scaffold006 rebuild exon 2245879 2246317 . + . gene_id "RvY_11780"; transcript_id "RvY_11780.1"; Scaffold006 rebuild transcript 2248029 2248370 . + . gene_id "RvY_11782"; transcript_id "RvY_11782.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2248029 2248370 . + . gene_id "RvY_11782"; transcript_id "RvY_11782.1"; Scaffold006 rebuild transcript 2249332 2249799 . + . gene_id "RvY_11783"; transcript_id "RvY_11783.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2249332 2249799 . + . gene_id "RvY_11783"; transcript_id "RvY_11783.1"; Scaffold006 rebuild transcript 2250469 2251909 . - . gene_id "RvY_11784"; transcript_id "RvY_11784.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2250469 2250707 . - . gene_id "RvY_11784"; transcript_id "RvY_11784.1"; Scaffold006 rebuild exon 2251900 2251909 . - . gene_id "RvY_11784"; transcript_id "RvY_11784.1"; Scaffold006 rebuild transcript 2252642 2253007 . + . gene_id "RvY_11785"; transcript_id "RvY_11785.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2252642 2253007 . + . gene_id "RvY_11785"; transcript_id "RvY_11785.1"; Scaffold006 rebuild transcript 2253634 2255026 . - . gene_id "RvY_11786"; transcript_id "RvY_11786.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold006 rebuild exon 2253634 2254482 . - . gene_id "RvY_11786"; transcript_id "RvY_11786.1"; Scaffold006 rebuild exon 2254934 2255026 . - . gene_id "RvY_11786"; transcript_id "RvY_11786.1"; Scaffold006 rebuild transcript 2255152 2256119 . - . gene_id "RvY_11787"; transcript_id "RvY_11787.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2255152 2255601 . - . gene_id "RvY_11787"; transcript_id "RvY_11787.1"; Scaffold006 rebuild exon 2256078 2256119 . - . gene_id "RvY_11787"; transcript_id "RvY_11787.1"; Scaffold006 rebuild transcript 2256013 2257520 . + . gene_id "RvY_11788"; transcript_id "RvY_11788.1"; annotation "hypothetical protein."; Pfam "[LCM] Leucine carboxyl methyltransferase"; KO "K15451"; Scaffold006 rebuild exon 2256013 2256517 . + . gene_id "RvY_11788"; transcript_id "RvY_11788.1"; Scaffold006 rebuild exon 2256583 2256683 . + . gene_id "RvY_11788"; transcript_id "RvY_11788.1"; Scaffold006 rebuild exon 2256981 2257321 . + . gene_id "RvY_11788"; transcript_id "RvY_11788.1"; Scaffold006 rebuild exon 2257397 2257520 . + . gene_id "RvY_11788"; transcript_id "RvY_11788.1"; Scaffold006 rebuild transcript 2257738 2258895 . - . gene_id "RvY_11789"; transcript_id "RvY_11789.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2257738 2258099 . - . gene_id "RvY_11789"; transcript_id "RvY_11789.1"; Scaffold006 rebuild exon 2258334 2258895 . - . gene_id "RvY_11789"; transcript_id "RvY_11789.1"; Scaffold006 rebuild transcript 2259575 2260753 . + . gene_id "RvY_11790"; transcript_id "RvY_11790.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2259575 2260115 . + . gene_id "RvY_11790"; transcript_id "RvY_11790.1"; Scaffold006 rebuild exon 2260344 2260753 . + . gene_id "RvY_11790"; transcript_id "RvY_11790.1"; Scaffold006 rebuild transcript 2269057 2269278 . + . gene_id "RvY_11791"; transcript_id "RvY_11791.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2269057 2269278 . + . gene_id "RvY_11791"; transcript_id "RvY_11791.1"; Scaffold006 rebuild transcript 2272008 2272229 . - . gene_id "RvY_11792"; transcript_id "RvY_11792.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2272008 2272229 . - . gene_id "RvY_11792"; transcript_id "RvY_11792.1"; Scaffold006 rebuild transcript 2273144 2292657 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; gene_name "(2)RhsA"; annotation "putative Teneurin-2"; Pfam "[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|[NHL] NHL repeat|[EGF_2] EGF-like domain|[RHS_repeat] RHS Repeat"; CDD "(2)Rhs family protein [Cell envelope biogenesis, outer membrane]"; similar_genes "TEN2_CHICK(e-value:2.7e-30;bit-score:130.0)"; Scaffold006 rebuild exon 2273144 2273480 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2275921 2276229 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2278064 2278294 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2278736 2278886 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2279068 2279267 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2279352 2279450 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2279555 2279989 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2280360 2280634 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2280808 2280922 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2280982 2281080 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2281151 2281345 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2281463 2281660 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2281725 2281907 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2282096 2282242 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2282390 2282597 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2282679 2282810 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2282898 2283192 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2283327 2283603 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2283692 2283829 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2286689 2286944 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2287010 2287251 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2287441 2288077 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2288440 2289407 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2289530 2290193 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2290260 2290484 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2290551 2290812 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2291117 2291555 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild exon 2291849 2292657 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.1"; Scaffold006 rebuild transcript 2273144 2292657 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; gene_name "(2)RhsA"; annotation "putative Teneurin-2"; Pfam "[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|[NHL] NHL repeat|[EGF_2] EGF-like domain|[RHS_repeat] RHS Repeat"; CDD "(2)Rhs family protein [Cell envelope biogenesis, outer membrane]"; similar_genes "TEN2_CHICK(e-value:2.7e-30;bit-score:130.0)"; Scaffold006 rebuild exon 2273144 2273480 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2275921 2276229 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2278064 2278294 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2278736 2278886 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2279068 2279267 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2279352 2279450 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2280360 2280634 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2280808 2280922 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2280982 2281080 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2281151 2281345 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2281463 2281660 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2281725 2281907 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2282096 2282242 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2282390 2282597 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2282679 2282810 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2282898 2283192 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2283327 2283603 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2283692 2283829 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2286689 2286944 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2287010 2287251 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2287441 2288077 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2288440 2289407 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2289530 2290193 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2290260 2290484 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2290551 2290812 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2291117 2291555 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild exon 2291849 2292657 . + . gene_id "RvY_11793"; transcript_id "RvY_11793.2"; Scaffold006 rebuild transcript 2280383 2280595 . - . gene_id "RvY_11794"; transcript_id "RvY_11794.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2280383 2280595 . - . gene_id "RvY_11794"; transcript_id "RvY_11794.1"; Scaffold006 rebuild transcript 2284277 2285574 . - . gene_id "RvY_11795"; transcript_id "RvY_11795.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2284277 2284774 . - . gene_id "RvY_11795"; transcript_id "RvY_11795.1"; Scaffold006 rebuild exon 2285059 2285574 . - . gene_id "RvY_11795"; transcript_id "RvY_11795.1"; Scaffold006 rebuild transcript 2295346 2296355 . + . gene_id "RvY_11796"; transcript_id "RvY_11796.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2295346 2295441 . + . gene_id "RvY_11796"; transcript_id "RvY_11796.1"; Scaffold006 rebuild exon 2295819 2295949 . + . gene_id "RvY_11796"; transcript_id "RvY_11796.1"; Scaffold006 rebuild exon 2296043 2296355 . + . gene_id "RvY_11796"; transcript_id "RvY_11796.1"; Scaffold006 rebuild transcript 2298531 2300030 . + . gene_id "RvY_11797"; transcript_id "RvY_11797.1"; annotation "hypothetical protein."; Pfam "[FLYWCH] FLYWCH zinc finger domain"; Scaffold006 rebuild exon 2298531 2299410 . + . gene_id "RvY_11797"; transcript_id "RvY_11797.1"; Scaffold006 rebuild exon 2299518 2299726 . + . gene_id "RvY_11797"; transcript_id "RvY_11797.1"; Scaffold006 rebuild exon 2299818 2300030 . + . gene_id "RvY_11797"; transcript_id "RvY_11797.1"; Scaffold006 rebuild transcript 2298531 2299457 . + . gene_id "RvY_11797"; transcript_id "RvY_11797.2"; annotation "hypothetical protein."; Pfam "[FLYWCH] FLYWCH zinc finger domain"; Scaffold006 rebuild exon 2298531 2299457 . + . gene_id "RvY_11797"; transcript_id "RvY_11797.2"; Scaffold006 rebuild transcript 2300884 2301831 . - . gene_id "RvY_11798"; transcript_id "RvY_11798.1"; gene_name "MPV17"; annotation "protein Mpv17"; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; KO "K13348"; Scaffold006 rebuild exon 2300884 2300919 . - . gene_id "RvY_11798"; transcript_id "RvY_11798.1"; Scaffold006 rebuild exon 2301005 2301246 . - . gene_id "RvY_11798"; transcript_id "RvY_11798.1"; Scaffold006 rebuild exon 2301323 2301451 . - . gene_id "RvY_11798"; transcript_id "RvY_11798.1"; Scaffold006 rebuild exon 2301553 2301668 . - . gene_id "RvY_11798"; transcript_id "RvY_11798.1"; Scaffold006 rebuild exon 2301779 2301831 . - . gene_id "RvY_11798"; transcript_id "RvY_11798.1"; Scaffold006 rebuild transcript 2302067 2306617 . + . gene_id "RvY_11799"; transcript_id "RvY_11799.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 2302067 2302103 . + . gene_id "RvY_11799"; transcript_id "RvY_11799.1"; Scaffold006 rebuild exon 2305638 2306617 . + . gene_id "RvY_11799"; transcript_id "RvY_11799.1"; Scaffold006 rebuild transcript 2306989 2307584 . - . gene_id "RvY_11800"; transcript_id "RvY_11800.1"; annotation "hypothetical protein."; Pfam "[MORN] MORN repeat"; Scaffold006 rebuild exon 2306989 2307136 . - . gene_id "RvY_11800"; transcript_id "RvY_11800.1"; Scaffold006 rebuild exon 2307256 2307584 . - . gene_id "RvY_11800"; transcript_id "RvY_11800.1"; Scaffold006 rebuild transcript 2307658 2309027 . - . gene_id "RvY_11801"; transcript_id "RvY_11801.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2307658 2307776 . - . gene_id "RvY_11801"; transcript_id "RvY_11801.1"; Scaffold006 rebuild exon 2308889 2309027 . - . gene_id "RvY_11801"; transcript_id "RvY_11801.1"; Scaffold006 rebuild transcript 2311635 2314884 . + . gene_id "RvY_11802"; transcript_id "RvY_11802.1"; gene_name "TACRN"; annotation "tachykinin receptor, invertebrate"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04225"; similar_genes "TLR2_DROME(e-value:4.5e-09;bit-score:59.0)"; Scaffold006 rebuild exon 2311635 2312053 . + . gene_id "RvY_11802"; transcript_id "RvY_11802.1"; Scaffold006 rebuild exon 2313207 2313403 . + . gene_id "RvY_11802"; transcript_id "RvY_11802.1"; Scaffold006 rebuild exon 2313673 2313830 . + . gene_id "RvY_11802"; transcript_id "RvY_11802.1"; Scaffold006 rebuild exon 2313925 2314055 . + . gene_id "RvY_11802"; transcript_id "RvY_11802.1"; Scaffold006 rebuild exon 2314431 2314884 . + . gene_id "RvY_11802"; transcript_id "RvY_11802.1"; Scaffold006 rebuild transcript 2316147 2320226 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; gene_name "PTZ00146"; annotation "putative Glycine-rich cell wall structural protein"; CDD "fibrillarin; Provisional"; similar_genes "GRP1_ARATH(e-value:1.2e-45;bit-score:181.0)"; Scaffold006 rebuild exon 2316147 2316433 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2316502 2316677 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2316810 2317031 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2317087 2317131 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2317193 2317343 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2317405 2318811 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2318886 2318977 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2319075 2319813 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild exon 2319920 2320226 . - . gene_id "RvY_11803"; transcript_id "RvY_11803.1"; Scaffold006 rebuild transcript 2323980 2324327 . - . gene_id "RvY_11804"; transcript_id "RvY_11804.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2323980 2324327 . - . gene_id "RvY_11804"; transcript_id "RvY_11804.1"; Scaffold006 rebuild transcript 2326409 2328698 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.1"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold006 rebuild exon 2326409 2327760 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.1"; Scaffold006 rebuild exon 2327936 2328698 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.1"; Scaffold006 rebuild transcript 2326409 2328698 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.2"; gene_name "infB"; annotation "hypothetical protein."; CDD "translation initiation factor IF-2; Validated"; Scaffold006 rebuild exon 2326409 2327760 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.2"; Scaffold006 rebuild exon 2327936 2328641 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.2"; Scaffold006 rebuild exon 2328696 2328698 . - . gene_id "RvY_11805"; transcript_id "RvY_11805.2"; Scaffold006 rebuild transcript 2329669 2332935 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; annotation "hypothetical protein."; similar_genes "PCGF3_XENTR(e-value:5.1e-08;bit-score:56.0)"; Scaffold006 rebuild exon 2329669 2329780 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2329908 2330022 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2330208 2330263 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2330338 2330385 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2330503 2330635 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2330712 2330757 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2330895 2330999 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2331068 2331148 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2331288 2332545 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild exon 2332640 2332935 . + . gene_id "RvY_11806"; transcript_id "RvY_11806.1"; Scaffold006 rebuild transcript 2334306 2334569 . + . gene_id "RvY_11807"; transcript_id "RvY_11807.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2334306 2334569 . + . gene_id "RvY_11807"; transcript_id "RvY_11807.1"; Scaffold006 rebuild transcript 2334853 2335062 . + . gene_id "RvY_11808"; transcript_id "RvY_11808.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2334853 2335062 . + . gene_id "RvY_11808"; transcript_id "RvY_11808.1"; Scaffold006 rebuild transcript 2335798 2337033 . - . gene_id "RvY_11809"; transcript_id "RvY_11809.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2335798 2335904 . - . gene_id "RvY_11809"; transcript_id "RvY_11809.1"; Scaffold006 rebuild exon 2336592 2337033 . - . gene_id "RvY_11809"; transcript_id "RvY_11809.1"; Scaffold006 rebuild transcript 2342164 2348021 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; gene_name "CNOT6"; annotation "CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]"; EC "EC3.1.-.-"; KO "K12603"; similar_genes "CNOT6_XENLA(e-value:3.7e-17;bit-score:86.0)"; Scaffold006 rebuild exon 2342164 2342344 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild exon 2342428 2342614 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild exon 2342700 2343012 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild exon 2343079 2343252 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild exon 2343406 2343566 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild exon 2344657 2344728 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild exon 2347472 2348021 . - . gene_id "RvY_11810"; transcript_id "RvY_11810.1"; Scaffold006 rebuild transcript 2349155 2354659 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; gene_name "(2,3)PRK08565"; annotation "(1)DNA-directed RNA polymerase II subunit rpb2(2)putative DNA-directed RNA polymerase II subunit RPB2(3)hypothetical protein."; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|(1)[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|(1,2)[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|(1)[RNA_pol_Rpb2_4] RNA polymerase Rpb2, domain 4|(1)[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|(1)[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "(2,3)DNA-directed RNA polymerase subunit beta; Provisional"; EC "EC2.7.7.6"; similar_genes "(1)RPB2_DICDI(e-value:1.5e-60;bit-score:230.0)(2)RPB2_HUMAN(e-value:2.2e-36;bit-score:150.0)(3)RPB2_HUMAN(e-value:1.9e-16;bit-score:84.0)"; Scaffold006 rebuild exon 2349155 2349244 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2349451 2349646 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2349724 2350043 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2350128 2350235 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2350499 2350717 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2350783 2350987 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2351195 2351387 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2351579 2351853 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2352029 2352210 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2352279 2352387 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2352465 2352754 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2353122 2353471 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2353749 2354067 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2354304 2354477 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild exon 2354546 2354659 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.1"; Scaffold006 rebuild transcript 2352368 2355947 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; gene_name "(2,3)PRK08565"; annotation "(1)DNA-directed RNA polymerase II subunit rpb2(2)putative DNA-directed RNA polymerase II subunit RPB2(3)hypothetical protein."; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|(1)[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|(1,2)[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|(1)[RNA_pol_Rpb2_4] RNA polymerase Rpb2, domain 4|(1)[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|(1)[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "(2,3)DNA-directed RNA polymerase subunit beta; Provisional"; EC "EC2.7.7.6"; similar_genes "(1)RPB2_DICDI(e-value:1.5e-60;bit-score:230.0)(2)RPB2_HUMAN(e-value:2.2e-36;bit-score:150.0)(3)RPB2_HUMAN(e-value:1.9e-16;bit-score:84.0)"; Scaffold006 rebuild exon 2352368 2352754 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2353122 2353471 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2353749 2354067 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2354304 2354477 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2354546 2354884 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2355226 2355497 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2355557 2355670 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild exon 2355752 2355947 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.2"; Scaffold006 rebuild transcript 2353639 2355947 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.3"; gene_name "(2,3)PRK08565"; annotation "(1)DNA-directed RNA polymerase II subunit rpb2(2)putative DNA-directed RNA polymerase II subunit RPB2(3)hypothetical protein."; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|(1)[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|(1,2)[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|(1)[RNA_pol_Rpb2_4] RNA polymerase Rpb2, domain 4|(1)[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|(1)[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "(2,3)DNA-directed RNA polymerase subunit beta; Provisional"; EC "EC2.7.7.6"; similar_genes "(1)RPB2_DICDI(e-value:1.5e-60;bit-score:230.0)(2)RPB2_HUMAN(e-value:2.2e-36;bit-score:150.0)(3)RPB2_HUMAN(e-value:1.9e-16;bit-score:84.0)"; Scaffold006 rebuild exon 2353639 2354067 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.3"; Scaffold006 rebuild exon 2354304 2354477 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.3"; Scaffold006 rebuild exon 2354546 2354884 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.3"; Scaffold006 rebuild exon 2355226 2355497 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.3"; Scaffold006 rebuild exon 2355557 2355947 . - . gene_id "RvY_11811"; transcript_id "RvY_11811.3"; Scaffold006 rebuild transcript 2357504 2358731 . - . gene_id "RvY_11812"; transcript_id "RvY_11812.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2357504 2357841 . - . gene_id "RvY_11812"; transcript_id "RvY_11812.1"; Scaffold006 rebuild exon 2358155 2358731 . - . gene_id "RvY_11812"; transcript_id "RvY_11812.1"; Scaffold006 rebuild transcript 2359153 2361609 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; gene_name "(1)PRMT5"; annotation "(1)protein arginine N-methyltransferase 5 [EC:2.1.1.125](2)hypothetical protein."; Pfam "[PRMT5] PRMT5 arginine-N-methyltransferase"; EC "(1)EC2.1.1.125"; KO "(1)K02516"; similar_genes "(1)ANM5_ARATH(e-value:4.8e-17;bit-score:86.0)"; Scaffold006 rebuild exon 2359153 2359473 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; Scaffold006 rebuild exon 2359533 2359727 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; Scaffold006 rebuild exon 2359822 2359943 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; Scaffold006 rebuild exon 2359996 2360600 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; Scaffold006 rebuild exon 2360693 2361160 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; Scaffold006 rebuild exon 2361251 2361609 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.1"; Scaffold006 rebuild transcript 2359015 2360656 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.2"; gene_name "(1)PRMT5"; annotation "(1)protein arginine N-methyltransferase 5 [EC:2.1.1.125](2)hypothetical protein."; Pfam "[PRMT5] PRMT5 arginine-N-methyltransferase"; EC "(1)EC2.1.1.125"; KO "(1)K02516"; similar_genes "(1)ANM5_ARATH(e-value:4.8e-17;bit-score:86.0)"; Scaffold006 rebuild exon 2359015 2359473 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.2"; Scaffold006 rebuild exon 2359533 2359727 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.2"; Scaffold006 rebuild exon 2359822 2359943 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.2"; Scaffold006 rebuild exon 2359996 2360656 . + . gene_id "RvY_11813"; transcript_id "RvY_11813.2"; Scaffold006 rebuild transcript 2362845 2363979 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.1"; gene_name "(1)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold006 rebuild exon 2362845 2363212 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.1"; Scaffold006 rebuild exon 2363475 2363597 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.1"; Scaffold006 rebuild exon 2363673 2363764 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.1"; Scaffold006 rebuild exon 2363828 2363979 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.1"; Scaffold006 rebuild transcript 2362845 2363216 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.2"; gene_name "(1)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold006 rebuild exon 2362845 2363216 . + . gene_id "RvY_11814"; transcript_id "RvY_11814.2"; Scaffold006 rebuild transcript 2364982 2367039 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; gene_name "LMWPc"; annotation "hypothetical protein."; Pfam "[LMWPc] Low molecular weight phosphotyrosine protein phosphatase"; CDD "Substituted updates: Aug 22, 2001"; EC "EC3.1.3.48"; KO "K14394"; similar_genes "PPAC_RAT(e-value:1.8e-10;bit-score:64.0)"; Scaffold006 rebuild exon 2364982 2365086 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; Scaffold006 rebuild exon 2365150 2365249 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; Scaffold006 rebuild exon 2365339 2365437 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; Scaffold006 rebuild exon 2365502 2365578 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; Scaffold006 rebuild exon 2365638 2365711 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; Scaffold006 rebuild exon 2366859 2367039 . - . gene_id "RvY_11815"; transcript_id "RvY_11815.1"; Scaffold006 rebuild transcript 2374051 2374233 . + . gene_id "RvY_11816"; transcript_id "RvY_11816.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2374051 2374233 . + . gene_id "RvY_11816"; transcript_id "RvY_11816.1"; Scaffold006 rebuild transcript 2375467 2377446 . + . gene_id "RvY_11817"; transcript_id "RvY_11817.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 2375467 2376018 . + . gene_id "RvY_11817"; transcript_id "RvY_11817.1"; Scaffold006 rebuild exon 2376332 2376721 . + . gene_id "RvY_11817"; transcript_id "RvY_11817.1"; Scaffold006 rebuild exon 2377348 2377446 . + . gene_id "RvY_11817"; transcript_id "RvY_11817.1"; Scaffold006 rebuild transcript 2377692 2381139 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; gene_name "RasGEF"; annotation "Ras-GEF domain-containing family member 1B-B"; Pfam "[RasGEF_N] RasGEF N-terminal motif|[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; similar_genes "RG1BB_DANRE(e-value:2.8e-68;bit-score:256.0)"; Scaffold006 rebuild exon 2377692 2377725 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2377792 2377931 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2378006 2378158 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2378225 2378963 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2379090 2379256 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2379939 2380031 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2380159 2380311 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild exon 2381122 2381139 . - . gene_id "RvY_11818"; transcript_id "RvY_11818.1"; Scaffold006 rebuild transcript 2379047 2379220 . + . gene_id "RvY_11819"; transcript_id "RvY_11819.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2379047 2379220 . + . gene_id "RvY_11819"; transcript_id "RvY_11819.1"; Scaffold006 rebuild transcript 2387586 2388724 . - . gene_id "RvY_11820"; transcript_id "RvY_11820.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2387586 2387677 . - . gene_id "RvY_11820"; transcript_id "RvY_11820.1"; Scaffold006 rebuild exon 2388481 2388724 . - . gene_id "RvY_11820"; transcript_id "RvY_11820.1"; Scaffold006 rebuild transcript 2391840 2392216 . - . gene_id "RvY_11821"; transcript_id "RvY_11821.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2391840 2391873 . - . gene_id "RvY_11821"; transcript_id "RvY_11821.1"; Scaffold006 rebuild exon 2391948 2392041 . - . gene_id "RvY_11821"; transcript_id "RvY_11821.1"; Scaffold006 rebuild exon 2392105 2392216 . - . gene_id "RvY_11821"; transcript_id "RvY_11821.1"; Scaffold006 rebuild transcript 2393628 2393801 . + . gene_id "RvY_11822"; transcript_id "RvY_11822.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2393628 2393801 . + . gene_id "RvY_11822"; transcript_id "RvY_11822.1"; Scaffold006 rebuild transcript 2394829 2395202 . + . gene_id "RvY_11823"; transcript_id "RvY_11823.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2394829 2395013 . + . gene_id "RvY_11823"; transcript_id "RvY_11823.1"; Scaffold006 rebuild exon 2395100 2395202 . + . gene_id "RvY_11823"; transcript_id "RvY_11823.1"; Scaffold006 rebuild transcript 2396072 2397547 . - . gene_id "RvY_11824"; transcript_id "RvY_11824.1"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; Scaffold006 rebuild exon 2396072 2396417 . - . gene_id "RvY_11824"; transcript_id "RvY_11824.1"; Scaffold006 rebuild exon 2396484 2397547 . - . gene_id "RvY_11824"; transcript_id "RvY_11824.1"; Scaffold006 rebuild transcript 2398886 2403443 . - . gene_id "RvY_11825"; transcript_id "RvY_11825.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2398886 2398936 . - . gene_id "RvY_11825"; transcript_id "RvY_11825.1"; Scaffold006 rebuild exon 2399043 2399248 . - . gene_id "RvY_11825"; transcript_id "RvY_11825.1"; Scaffold006 rebuild exon 2399460 2399834 . - . gene_id "RvY_11825"; transcript_id "RvY_11825.1"; Scaffold006 rebuild exon 2399922 2399987 . - . gene_id "RvY_11825"; transcript_id "RvY_11825.1"; Scaffold006 rebuild exon 2403356 2403443 . - . gene_id "RvY_11825"; transcript_id "RvY_11825.1"; Scaffold006 rebuild transcript 2404877 2406801 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; annotation "hypothetical protein."; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[PhoD] PhoD-like phosphatase|(1)[Metallophos_C] Iron/zinc purple acid phosphatase-like protein C"; EC "(1)EC3.1.3.2"; similar_genes "(1)PAPL_HUMAN(e-value:3.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 2404877 2405039 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2405141 2405338 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2405404 2405619 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2405691 2405940 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2406007 2406099 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2406196 2406439 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2406518 2406652 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild exon 2406727 2406801 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.1"; Scaffold006 rebuild transcript 2404877 2406425 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; annotation "hypothetical protein."; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[PhoD] PhoD-like phosphatase|(1)[Metallophos_C] Iron/zinc purple acid phosphatase-like protein C"; EC "(1)EC3.1.3.2"; similar_genes "(1)PAPL_HUMAN(e-value:3.0e-10;bit-score:63.0)"; Scaffold006 rebuild exon 2404877 2405039 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; Scaffold006 rebuild exon 2405141 2405338 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; Scaffold006 rebuild exon 2405404 2405619 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; Scaffold006 rebuild exon 2405691 2405940 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; Scaffold006 rebuild exon 2406007 2406095 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; Scaffold006 rebuild exon 2406196 2406425 . + . gene_id "RvY_11826"; transcript_id "RvY_11826.2"; Scaffold006 rebuild transcript 2409189 2410154 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.1"; gene_name "(1,3)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,3)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 2409189 2410154 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.1"; Scaffold006 rebuild transcript 2408279 2409199 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.2"; gene_name "(1,3)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,3)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 2408279 2409199 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.2"; Scaffold006 rebuild transcript 2409189 2410560 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.3"; gene_name "(1,3)RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "(1,3)RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold006 rebuild exon 2409189 2410088 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.3"; Scaffold006 rebuild exon 2410543 2410560 . + . gene_id "RvY_11827"; transcript_id "RvY_11827.3"; Scaffold006 rebuild transcript 2411001 2411841 . + . gene_id "RvY_11828"; transcript_id "RvY_11828.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2411001 2411172 . + . gene_id "RvY_11828"; transcript_id "RvY_11828.1"; Scaffold006 rebuild exon 2411741 2411841 . + . gene_id "RvY_11828"; transcript_id "RvY_11828.1"; Scaffold006 rebuild transcript 2412916 2413098 . + . gene_id "RvY_11829"; transcript_id "RvY_11829.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2412916 2413098 . + . gene_id "RvY_11829"; transcript_id "RvY_11829.1"; Scaffold006 rebuild transcript 2414633 2414980 . - . gene_id "RvY_11830"; transcript_id "RvY_11830.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2414633 2414980 . - . gene_id "RvY_11830"; transcript_id "RvY_11830.1"; Scaffold006 rebuild transcript 2415282 2415596 . + . gene_id "RvY_11831"; transcript_id "RvY_11831.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2415282 2415596 . + . gene_id "RvY_11831"; transcript_id "RvY_11831.1"; Scaffold006 rebuild transcript 2418401 2420529 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2418401 2418515 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.1"; Scaffold006 rebuild exon 2418594 2418681 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.1"; Scaffold006 rebuild exon 2420175 2420301 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.1"; Scaffold006 rebuild exon 2420377 2420529 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.1"; Scaffold006 rebuild transcript 2418590 2420529 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.2"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2418590 2418681 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.2"; Scaffold006 rebuild exon 2420175 2420301 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.2"; Scaffold006 rebuild exon 2420377 2420529 . - . gene_id "RvY_11832"; transcript_id "RvY_11832.2"; Scaffold006 rebuild transcript 2420640 2421898 . - . gene_id "RvY_11833"; transcript_id "RvY_11833.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2420640 2420816 . - . gene_id "RvY_11833"; transcript_id "RvY_11833.1"; Scaffold006 rebuild exon 2421202 2421339 . - . gene_id "RvY_11833"; transcript_id "RvY_11833.1"; Scaffold006 rebuild exon 2421410 2421481 . - . gene_id "RvY_11833"; transcript_id "RvY_11833.1"; Scaffold006 rebuild exon 2421887 2421898 . - . gene_id "RvY_11833"; transcript_id "RvY_11833.1"; Scaffold006 rebuild transcript 2422413 2423327 . - . gene_id "RvY_11834"; transcript_id "RvY_11834.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2422413 2422767 . - . gene_id "RvY_11834"; transcript_id "RvY_11834.1"; Scaffold006 rebuild exon 2422878 2422941 . - . gene_id "RvY_11834"; transcript_id "RvY_11834.1"; Scaffold006 rebuild exon 2423018 2423327 . - . gene_id "RvY_11834"; transcript_id "RvY_11834.1"; Scaffold006 rebuild transcript 2425935 2428216 . - . gene_id "RvY_11835"; transcript_id "RvY_11835.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold006 rebuild exon 2425935 2426727 . - . gene_id "RvY_11835"; transcript_id "RvY_11835.1"; Scaffold006 rebuild exon 2428152 2428216 . - . gene_id "RvY_11835"; transcript_id "RvY_11835.1"; Scaffold006 rebuild transcript 2428561 2428836 . - . gene_id "RvY_11836"; transcript_id "RvY_11836.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2428561 2428836 . - . gene_id "RvY_11836"; transcript_id "RvY_11836.1"; Scaffold006 rebuild transcript 2430828 2434721 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2430828 2431010 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2431307 2431708 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2431848 2432210 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2432486 2432679 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2432759 2433017 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2433192 2433593 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2433829 2434237 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild exon 2434489 2434721 . - . gene_id "RvY_11837"; transcript_id "RvY_11837.1"; Scaffold006 rebuild transcript 2436544 2437014 . - . gene_id "RvY_11838"; transcript_id "RvY_11838.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold006 rebuild exon 2436544 2436949 . - . gene_id "RvY_11838"; transcript_id "RvY_11838.1"; Scaffold006 rebuild exon 2437007 2437014 . - . gene_id "RvY_11838"; transcript_id "RvY_11838.1"; Scaffold006 rebuild transcript 2437054 2438815 . - . gene_id "RvY_11839"; transcript_id "RvY_11839.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2437054 2437251 . - . gene_id "RvY_11839"; transcript_id "RvY_11839.1"; Scaffold006 rebuild exon 2437678 2438045 . - . gene_id "RvY_11839"; transcript_id "RvY_11839.1"; Scaffold006 rebuild exon 2438214 2438589 . - . gene_id "RvY_11839"; transcript_id "RvY_11839.1"; Scaffold006 rebuild exon 2438684 2438815 . - . gene_id "RvY_11839"; transcript_id "RvY_11839.1"; Scaffold006 rebuild transcript 2439286 2439654 . + . gene_id "RvY_11840"; transcript_id "RvY_11840.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold006 rebuild exon 2439286 2439654 . + . gene_id "RvY_11840"; transcript_id "RvY_11840.1"; Scaffold006 rebuild transcript 2439676 2439843 . + . gene_id "RvY_11841"; transcript_id "RvY_11841.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2439676 2439843 . + . gene_id "RvY_11841"; transcript_id "RvY_11841.1"; Scaffold006 rebuild transcript 2440398 2440592 . - . gene_id "RvY_11842"; transcript_id "RvY_11842.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2440398 2440592 . - . gene_id "RvY_11842"; transcript_id "RvY_11842.1"; Scaffold006 rebuild transcript 2443307 2450497 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; gene_name "rpoB"; annotation "DNA-directed RNA polymerase II subunit RPB2"; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|[RNA_pol_Rpb2_4] RNA polymerase Rpb2, domain 4|[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "DNA-directed RNA polymerase subunit beta; Provisional"; EC "EC2.7.7.6"; KO "K03043"; similar_genes "RPB2_DROME(e-value:1.3e-55;bit-score:214.0)"; Scaffold006 rebuild exon 2443307 2443450 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2443544 2443739 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2443810 2444132 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2444433 2444540 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2444641 2444856 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2444944 2445188 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2445590 2445738 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2445807 2446139 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2446387 2446421 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2446525 2446647 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2446705 2446822 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2447079 2447373 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2447452 2447614 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2447921 2448430 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2448656 2448820 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2448877 2449157 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2449336 2449393 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2449505 2449794 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2450078 2450299 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild exon 2450383 2450497 . - . gene_id "RvY_11843"; transcript_id "RvY_11843.1"; Scaffold006 rebuild transcript 2452889 2453392 . - . gene_id "RvY_11844"; transcript_id "RvY_11844.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2452889 2453392 . - . gene_id "RvY_11844"; transcript_id "RvY_11844.1"; Scaffold006 rebuild transcript 2453417 2456840 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain|[DDE_4] DDE superfamily endonuclease"; Scaffold006 rebuild exon 2453417 2453525 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2453655 2454066 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2454171 2454312 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2454349 2454640 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2454813 2455290 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2455620 2455905 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2456092 2456139 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild exon 2456208 2456840 . + . gene_id "RvY_11845"; transcript_id "RvY_11845.1"; Scaffold006 rebuild transcript 2456859 2457860 . - . gene_id "RvY_11846"; transcript_id "RvY_11846.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2456859 2457268 . - . gene_id "RvY_11846"; transcript_id "RvY_11846.1"; Scaffold006 rebuild exon 2457396 2457542 . - . gene_id "RvY_11846"; transcript_id "RvY_11846.1"; Scaffold006 rebuild exon 2457551 2457860 . - . gene_id "RvY_11846"; transcript_id "RvY_11846.1"; Scaffold006 rebuild transcript 2458208 2458675 . + . gene_id "RvY_11847"; transcript_id "RvY_11847.1"; gene_name "BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold006 rebuild exon 2458208 2458675 . + . gene_id "RvY_11847"; transcript_id "RvY_11847.1"; Scaffold006 rebuild transcript 2458208 2458672 . + . gene_id "RvY_11847"; transcript_id "RvY_11847.2"; gene_name "BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold006 rebuild exon 2458208 2458672 . + . gene_id "RvY_11847"; transcript_id "RvY_11847.2"; Scaffold006 rebuild transcript 2460047 2465327 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage."; Scaffold006 rebuild exon 2460047 2460163 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2460250 2460495 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2460566 2460651 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2460744 2460837 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2460906 2461024 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2461126 2461303 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2461379 2461513 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2461594 2461698 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2461779 2461874 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2462036 2462370 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2462530 2462732 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2462885 2462934 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2463424 2463860 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild exon 2465162 2465327 . - . gene_id "RvY_11848"; transcript_id "RvY_11848.1"; Scaffold006 rebuild transcript 2468128 2469098 . - . gene_id "RvY_11849"; transcript_id "RvY_11849.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2468128 2468693 . - . gene_id "RvY_11849"; transcript_id "RvY_11849.1"; Scaffold006 rebuild exon 2469050 2469098 . - . gene_id "RvY_11849"; transcript_id "RvY_11849.1"; Scaffold006 rebuild transcript 2469568 2469798 . - . gene_id "RvY_11850"; transcript_id "RvY_11850.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2469568 2469798 . - . gene_id "RvY_11850"; transcript_id "RvY_11850.1"; Scaffold006 rebuild transcript 2474423 2478183 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; annotation "hypothetical protein."; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; similar_genes "Y1760_DROME(e-value:2.5e-20;bit-score:97.0)"; Scaffold006 rebuild exon 2474423 2474563 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2474802 2475009 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2475210 2475570 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2475647 2475785 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2475878 2476182 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2476387 2476471 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2476587 2476655 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2476813 2476928 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2477005 2477219 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2477302 2477440 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2477643 2477889 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild exon 2477953 2478183 . + . gene_id "RvY_11851"; transcript_id "RvY_11851.1"; Scaffold006 rebuild transcript 2478783 2480082 . + . gene_id "RvY_11852"; transcript_id "RvY_11852.1"; annotation "hypothetical protein."; Scaffold006 rebuild exon 2478783 2478800 . + . gene_id "RvY_11852"; transcript_id "RvY_11852.1"; Scaffold006 rebuild exon 2479669 2479766 . + . gene_id "RvY_11852"; transcript_id "RvY_11852.1"; Scaffold006 rebuild exon 2479896 2480082 . + . gene_id "RvY_11852"; transcript_id "RvY_11852.1"; Scaffold007 rebuild transcript 233 1149 . - . gene_id "RvY_11854"; transcript_id "RvY_11854.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold007 rebuild exon 233 661 . - . gene_id "RvY_11854"; transcript_id "RvY_11854.1"; Scaffold007 rebuild exon 736 1149 . - . gene_id "RvY_11854"; transcript_id "RvY_11854.1"; Scaffold007 rebuild transcript 1497 4037 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1497 1604 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; Scaffold007 rebuild exon 1673 1838 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; Scaffold007 rebuild exon 2109 2978 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; Scaffold007 rebuild exon 3161 3530 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; Scaffold007 rebuild exon 3590 3707 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; Scaffold007 rebuild exon 3777 4037 . + . gene_id "RvY_11855"; transcript_id "RvY_11855.1"; Scaffold007 rebuild transcript 4325 5181 . - . gene_id "RvY_11856"; transcript_id "RvY_11856.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold007 rebuild exon 4325 4480 . - . gene_id "RvY_11856"; transcript_id "RvY_11856.1"; Scaffold007 rebuild exon 4729 5181 . - . gene_id "RvY_11856"; transcript_id "RvY_11856.1"; Scaffold007 rebuild transcript 7051 12084 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; gene_name "STX1B_2_3"; annotation "Syntaxin-1A"; Pfam "[SNARE]|[Syntaxin]"; CDD "Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain"; KO "K08486"; similar_genes "(1)STX1A_DROME(e-value:6.0e-98;bit-score:354.0)(2)STX1A_DROME(e-value:1.8e-101;bit-score:366.0)"; Scaffold007 rebuild exon 7051 7137 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 7456 7566 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 7627 7764 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 7890 7963 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 8039 8147 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 8227 8300 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 8405 8479 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 8544 8643 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 11114 11206 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild exon 12052 12084 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.1"; Scaffold007 rebuild transcript 6023 12084 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; gene_name "STX1B_2_3"; annotation "Syntaxin-1A"; Pfam "[SNARE]|[Syntaxin]"; CDD "Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain"; KO "K08486"; similar_genes "(1)STX1A_DROME(e-value:6.0e-98;bit-score:354.0)(2)STX1A_DROME(e-value:1.8e-101;bit-score:366.0)"; Scaffold007 rebuild exon 6023 6106 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 7456 7566 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 7627 7764 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 7890 7963 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 8039 8147 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 8227 8300 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 8405 8479 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 8544 8643 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 11114 11206 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild exon 12052 12084 . - . gene_id "RvY_11857"; transcript_id "RvY_11857.2"; Scaffold007 rebuild transcript 12152 12754 . + . gene_id "RvY_11858"; transcript_id "RvY_11858.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 12152 12254 . + . gene_id "RvY_11858"; transcript_id "RvY_11858.1"; Scaffold007 rebuild exon 12516 12754 . + . gene_id "RvY_11858"; transcript_id "RvY_11858.1"; Scaffold007 rebuild transcript 13279 14496 . + . gene_id "RvY_11859"; transcript_id "RvY_11859.1"; gene_name "RAN"; annotation "GTP-binding nuclear protein Ran"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "GTP-binding nuclear protein; Provisional"; KO "K07936"; similar_genes "RAN_CHICK(e-value:3.7e-106;bit-score:382.0)"; Scaffold007 rebuild exon 13279 13314 . + . gene_id "RvY_11859"; transcript_id "RvY_11859.1"; Scaffold007 rebuild exon 13463 13673 . + . gene_id "RvY_11859"; transcript_id "RvY_11859.1"; Scaffold007 rebuild exon 13904 14091 . + . gene_id "RvY_11859"; transcript_id "RvY_11859.1"; Scaffold007 rebuild exon 14213 14383 . + . gene_id "RvY_11859"; transcript_id "RvY_11859.1"; Scaffold007 rebuild exon 14452 14496 . + . gene_id "RvY_11859"; transcript_id "RvY_11859.1"; Scaffold007 rebuild transcript 14864 16401 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; annotation "Uncharacterized methyltransferase WBSCR22"; Pfam "[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain|[WBS_methylT] Methyltransferase involved in Williams-Beuren syndrome"; EC "EC2.1.1.-"; similar_genes "WBS22_HUMAN(e-value:2.0e-77;bit-score:286.0)"; Scaffold007 rebuild exon 14864 14918 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 15000 15176 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 15251 15336 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 15404 15454 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 15514 15707 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 15776 15858 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 16048 16143 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 16232 16269 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild exon 16357 16401 . - . gene_id "RvY_11860"; transcript_id "RvY_11860.1"; Scaffold007 rebuild transcript 17129 18953 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; gene_name "USF"; annotation "upstream stimulatory factor"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09106"; similar_genes "USF1_RABIT(e-value:1.1e-14;bit-score:78.0)"; Scaffold007 rebuild exon 17129 17144 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild exon 17205 17320 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild exon 17395 17574 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild exon 17660 17798 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild exon 17881 17988 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild exon 18078 18172 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild exon 18675 18953 . + . gene_id "RvY_11861"; transcript_id "RvY_11861.1"; Scaffold007 rebuild transcript 19454 20316 . - . gene_id "RvY_11862"; transcript_id "RvY_11862.1"; annotation "hypothetical protein."; Pfam "[PAN_4] PAN domain|[PAN_1] PAN domain"; Scaffold007 rebuild exon 19454 19860 . - . gene_id "RvY_11862"; transcript_id "RvY_11862.1"; Scaffold007 rebuild exon 20055 20316 . - . gene_id "RvY_11862"; transcript_id "RvY_11862.1"; Scaffold007 rebuild transcript 20712 20921 . + . gene_id "RvY_11863"; transcript_id "RvY_11863.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 20712 20921 . + . gene_id "RvY_11863"; transcript_id "RvY_11863.1"; Scaffold007 rebuild transcript 22798 24137 . + . gene_id "RvY_11864"; transcript_id "RvY_11864.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 22798 23387 . + . gene_id "RvY_11864"; transcript_id "RvY_11864.1"; Scaffold007 rebuild exon 23460 23645 . + . gene_id "RvY_11864"; transcript_id "RvY_11864.1"; Scaffold007 rebuild exon 23734 23939 . + . gene_id "RvY_11864"; transcript_id "RvY_11864.1"; Scaffold007 rebuild exon 24022 24137 . + . gene_id "RvY_11864"; transcript_id "RvY_11864.1"; Scaffold007 rebuild transcript 24510 25887 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 24510 24531 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.1"; Scaffold007 rebuild exon 25134 25520 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.1"; Scaffold007 rebuild exon 25613 25887 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.1"; Scaffold007 rebuild transcript 24974 25609 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 24974 25609 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.2"; Scaffold007 rebuild transcript 24974 25609 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 24974 25061 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.3"; Scaffold007 rebuild exon 25134 25609 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.3"; Scaffold007 rebuild transcript 24510 25688 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.4"; annotation "hypothetical protein."; Scaffold007 rebuild exon 24510 24531 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.4"; Scaffold007 rebuild exon 25134 25520 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.4"; Scaffold007 rebuild exon 25594 25688 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.4"; Scaffold007 rebuild transcript 24510 25609 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.5"; annotation "hypothetical protein."; Scaffold007 rebuild exon 24510 24531 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.5"; Scaffold007 rebuild exon 25134 25609 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.5"; Scaffold007 rebuild transcript 24805 25197 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.6"; annotation "hypothetical protein."; Scaffold007 rebuild exon 24805 25197 . + . gene_id "RvY_11865"; transcript_id "RvY_11865.6"; Scaffold007 rebuild transcript 26113 26605 . - . gene_id "RvY_11866"; transcript_id "RvY_11866.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 26113 26418 . - . gene_id "RvY_11866"; transcript_id "RvY_11866.1"; Scaffold007 rebuild exon 26528 26605 . - . gene_id "RvY_11866"; transcript_id "RvY_11866.1"; Scaffold007 rebuild transcript 26428 27673 . + . gene_id "RvY_11867"; transcript_id "RvY_11867.1"; gene_name "DnaJ_bact"; annotation "hypothetical protein."; Pfam "[DnaJ]"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; similar_genes "DNAJ_LACPL(e-value:2.6e-07;bit-score:53.0)"; Scaffold007 rebuild exon 26428 26682 . + . gene_id "RvY_11867"; transcript_id "RvY_11867.1"; Scaffold007 rebuild exon 26942 27673 . + . gene_id "RvY_11867"; transcript_id "RvY_11867.1"; Scaffold007 rebuild transcript 27875 28875 . - . gene_id "RvY_11868"; transcript_id "RvY_11868.1"; gene_name "Mod_r"; annotation "hypothetical protein."; Pfam "[Mod_r] Modifier of rudimentary (Mod(r)) protein"; CDD "Modifier of rudimentary (Mod(r)) protein. This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic, and both of these regions are represented in this family. Members of this family include the Vps37 subunit of the endosomal sorting complex ESCRT-I, a complex involved in recruiting transport machinery for protein sorting at the multivesicular body (MVB). The yeast ESCRT-I complex consists of three proteins (Vps23, Vps28 and Vps37). The mammalian homologue of Vps37 interacts with Tsg101 (Pfam: PF05743) through its mod(r) domain and its function is essential for lysosomal sorting of EGF receptors."; Scaffold007 rebuild exon 27875 28069 . - . gene_id "RvY_11868"; transcript_id "RvY_11868.1"; Scaffold007 rebuild exon 28144 28226 . - . gene_id "RvY_11868"; transcript_id "RvY_11868.1"; Scaffold007 rebuild exon 28509 28875 . - . gene_id "RvY_11868"; transcript_id "RvY_11868.1"; Scaffold007 rebuild transcript 31310 32030 . - . gene_id "RvY_11869"; transcript_id "RvY_11869.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 31310 31493 . - . gene_id "RvY_11869"; transcript_id "RvY_11869.1"; Scaffold007 rebuild exon 31723 32030 . - . gene_id "RvY_11869"; transcript_id "RvY_11869.1"; Scaffold007 rebuild transcript 32094 32752 . - . gene_id "RvY_11870"; transcript_id "RvY_11870.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 32094 32607 . - . gene_id "RvY_11870"; transcript_id "RvY_11870.1"; Scaffold007 rebuild exon 32703 32752 . - . gene_id "RvY_11870"; transcript_id "RvY_11870.1"; Scaffold007 rebuild transcript 37087 38148 . - . gene_id "RvY_11871"; transcript_id "RvY_11871.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 37087 38148 . - . gene_id "RvY_11871"; transcript_id "RvY_11871.1"; Scaffold007 rebuild transcript 41358 42183 . - . gene_id "RvY_11872"; transcript_id "RvY_11872.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 41358 41542 . - . gene_id "RvY_11872"; transcript_id "RvY_11872.1"; Scaffold007 rebuild exon 42177 42183 . - . gene_id "RvY_11872"; transcript_id "RvY_11872.1"; Scaffold007 rebuild transcript 43717 46369 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold007 rebuild exon 43717 44006 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 44067 44211 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 44292 44437 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 44525 44608 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 45049 45153 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 45223 45454 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 45582 45813 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 45873 46008 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 46142 46228 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild exon 46297 46369 . - . gene_id "RvY_11873"; transcript_id "RvY_11873.1"; Scaffold007 rebuild transcript 45642 46043 . + . gene_id "RvY_11874"; transcript_id "RvY_11874.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 45642 46043 . + . gene_id "RvY_11874"; transcript_id "RvY_11874.1"; Scaffold007 rebuild transcript 47156 48750 . - . gene_id "RvY_11875"; transcript_id "RvY_11875.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold007 rebuild exon 47156 47311 . - . gene_id "RvY_11875"; transcript_id "RvY_11875.1"; Scaffold007 rebuild exon 47798 48215 . - . gene_id "RvY_11875"; transcript_id "RvY_11875.1"; Scaffold007 rebuild exon 48389 48750 . - . gene_id "RvY_11875"; transcript_id "RvY_11875.1"; Scaffold007 rebuild transcript 48277 48936 . - . gene_id "RvY_11875"; transcript_id "RvY_11875.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold007 rebuild exon 48277 48936 . - . gene_id "RvY_11875"; transcript_id "RvY_11875.2"; Scaffold007 rebuild transcript 51186 54126 . + . gene_id "RvY_11876"; transcript_id "RvY_11876.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 51186 51453 . + . gene_id "RvY_11876"; transcript_id "RvY_11876.1"; Scaffold007 rebuild exon 52317 52670 . + . gene_id "RvY_11876"; transcript_id "RvY_11876.1"; Scaffold007 rebuild exon 54023 54126 . + . gene_id "RvY_11876"; transcript_id "RvY_11876.1"; Scaffold007 rebuild transcript 56224 58423 . + . gene_id "RvY_11877"; transcript_id "RvY_11877.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[CAP_GLY] CAP-Gly domain|[zf-RING_2] Ring finger domain"; Scaffold007 rebuild exon 56224 56575 . + . gene_id "RvY_11877"; transcript_id "RvY_11877.1"; Scaffold007 rebuild exon 57189 57517 . + . gene_id "RvY_11877"; transcript_id "RvY_11877.1"; Scaffold007 rebuild exon 57578 58423 . + . gene_id "RvY_11877"; transcript_id "RvY_11877.1"; Scaffold007 rebuild transcript 58824 59600 . - . gene_id "RvY_11878"; transcript_id "RvY_11878.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 58824 59377 . - . gene_id "RvY_11878"; transcript_id "RvY_11878.1"; Scaffold007 rebuild exon 59453 59600 . - . gene_id "RvY_11878"; transcript_id "RvY_11878.1"; Scaffold007 rebuild transcript 60096 61276 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 60096 60332 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.1"; Scaffold007 rebuild exon 60980 61162 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.1"; Scaffold007 rebuild exon 61256 61276 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.1"; Scaffold007 rebuild transcript 60116 61047 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 60116 60332 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.2"; Scaffold007 rebuild exon 60980 61047 . - . gene_id "RvY_11879"; transcript_id "RvY_11879.2"; Scaffold007 rebuild transcript 62475 62801 . - . gene_id "RvY_11880"; transcript_id "RvY_11880.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 62475 62801 . - . gene_id "RvY_11880"; transcript_id "RvY_11880.1"; Scaffold007 rebuild transcript 66189 67824 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.1"; gene_name "(1)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "(1)EC2.7.10.1"; similar_genes "(1)FGFR3_XENLA(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 66189 66368 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.1"; Scaffold007 rebuild exon 66428 67563 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.1"; Scaffold007 rebuild exon 67692 67824 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.1"; Scaffold007 rebuild transcript 67737 68557 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.2"; gene_name "(1)PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "(1)Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "(1)EC2.7.10.1"; similar_genes "(1)FGFR3_XENLA(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 67737 68137 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.2"; Scaffold007 rebuild exon 68215 68557 . - . gene_id "RvY_11881"; transcript_id "RvY_11881.2"; Scaffold007 rebuild transcript 69640 69936 . - . gene_id "RvY_11882"; transcript_id "RvY_11882.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 69640 69936 . - . gene_id "RvY_11882"; transcript_id "RvY_11882.1"; Scaffold007 rebuild transcript 69978 70427 . - . gene_id "RvY_11883"; transcript_id "RvY_11883.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 69978 70318 . - . gene_id "RvY_11883"; transcript_id "RvY_11883.1"; Scaffold007 rebuild exon 70400 70427 . - . gene_id "RvY_11883"; transcript_id "RvY_11883.1"; Scaffold007 rebuild transcript 70893 71540 . + . gene_id "RvY_11884"; transcript_id "RvY_11884.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 70893 70962 . + . gene_id "RvY_11884"; transcript_id "RvY_11884.1"; Scaffold007 rebuild exon 71455 71540 . + . gene_id "RvY_11884"; transcript_id "RvY_11884.1"; Scaffold007 rebuild transcript 73643 74974 . - . gene_id "RvY_11885"; transcript_id "RvY_11885.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 73643 74078 . - . gene_id "RvY_11885"; transcript_id "RvY_11885.1"; Scaffold007 rebuild exon 74370 74544 . - . gene_id "RvY_11885"; transcript_id "RvY_11885.1"; Scaffold007 rebuild exon 74584 74974 . - . gene_id "RvY_11885"; transcript_id "RvY_11885.1"; Scaffold007 rebuild transcript 77217 77489 . + . gene_id "RvY_11886"; transcript_id "RvY_11886.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 77217 77489 . + . gene_id "RvY_11886"; transcript_id "RvY_11886.1"; Scaffold007 rebuild transcript 78777 81910 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; annotation "hypothetical protein."; Pfam "[Med15] ARC105 or Med15 subunit of Mediator complex non-fungal"; Scaffold007 rebuild exon 78777 78847 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 78914 79001 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 79072 79137 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 79215 79299 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 79451 79765 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 79843 79955 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 80067 80278 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 80367 80584 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 80662 80783 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 80861 81237 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild exon 81475 81910 . + . gene_id "RvY_11887"; transcript_id "RvY_11887.1"; Scaffold007 rebuild transcript 87215 91421 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; gene_name "ATP2A"; annotation "Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522."; EC "EC3.6.3.8"; KO "K05853"; similar_genes "ATC_ARTSF(e-value:2.8e-225;bit-score:777.0)"; Scaffold007 rebuild exon 87215 87353 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 87620 87826 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 87890 88116 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 88388 88708 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 88837 89182 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 89405 89556 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 89620 89840 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 90039 90327 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 90678 90811 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 90901 91018 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild exon 91221 91421 . + . gene_id "RvY_11888"; transcript_id "RvY_11888.1"; Scaffold007 rebuild transcript 94956 96901 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; gene_name "(1)MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "(1)The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold007 rebuild exon 94956 95158 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 95222 95312 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 95391 95459 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 95520 95584 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 95653 95735 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 95794 95867 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 96568 96663 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild exon 96719 96901 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.1"; Scaffold007 rebuild transcript 94039 95066 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.2"; gene_name "(1)MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "(1)The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold007 rebuild exon 94039 94390 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.2"; Scaffold007 rebuild exon 94463 94537 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.2"; Scaffold007 rebuild exon 94608 94703 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.2"; Scaffold007 rebuild exon 94759 94955 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.2"; Scaffold007 rebuild exon 95019 95066 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.2"; Scaffold007 rebuild transcript 94956 96189 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; gene_name "(1)MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "(1)The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold007 rebuild exon 94956 95158 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild exon 95222 95312 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild exon 95391 95459 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild exon 95520 95584 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild exon 95653 95735 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild exon 95794 95867 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild exon 96037 96189 . - . gene_id "RvY_11889"; transcript_id "RvY_11889.3"; Scaffold007 rebuild transcript 99160 100131 . + . gene_id "RvY_11890"; transcript_id "RvY_11890.1"; gene_name "K10536"; annotation "agmatine deiminase [EC:3.5.3.12]"; Pfam "[PAD_porph] Porphyromonas-type peptidyl-arginine deiminase"; EC "EC3.5.3.12"; KO "K10536"; similar_genes "AGUA_PSEFS(e-value:3.2e-16;bit-score:83.0)"; Scaffold007 rebuild exon 99160 100131 . + . gene_id "RvY_11890"; transcript_id "RvY_11890.1"; Scaffold007 rebuild transcript 100597 101758 . - . gene_id "RvY_11891"; transcript_id "RvY_11891.1"; gene_name "DYS1"; annotation "hypothetical protein."; Pfam "[DS] Deoxyhypusine synthase"; CDD "Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]"; Scaffold007 rebuild exon 100597 100684 . - . gene_id "RvY_11891"; transcript_id "RvY_11891.1"; Scaffold007 rebuild exon 100797 101758 . - . gene_id "RvY_11891"; transcript_id "RvY_11891.1"; Scaffold007 rebuild transcript 100778 101758 . - . gene_id "RvY_11891"; transcript_id "RvY_11891.2"; gene_name "DYS1"; annotation "hypothetical protein."; Pfam "[DS] Deoxyhypusine synthase"; CDD "Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]"; Scaffold007 rebuild exon 100778 101758 . - . gene_id "RvY_11891"; transcript_id "RvY_11891.2"; Scaffold007 rebuild transcript 105138 105906 . + . gene_id "RvY_11892"; transcript_id "RvY_11892.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; Scaffold007 rebuild exon 105138 105214 . + . gene_id "RvY_11892"; transcript_id "RvY_11892.1"; Scaffold007 rebuild exon 105338 105578 . + . gene_id "RvY_11892"; transcript_id "RvY_11892.1"; Scaffold007 rebuild exon 105799 105906 . + . gene_id "RvY_11892"; transcript_id "RvY_11892.1"; Scaffold007 rebuild transcript 106257 107249 . + . gene_id "RvY_11893"; transcript_id "RvY_11893.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 106257 107249 . + . gene_id "RvY_11893"; transcript_id "RvY_11893.1"; Scaffold007 rebuild transcript 108176 109174 . + . gene_id "RvY_11894"; transcript_id "RvY_11894.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 108176 109174 . + . gene_id "RvY_11894"; transcript_id "RvY_11894.1"; Scaffold007 rebuild transcript 109439 110199 . - . gene_id "RvY_11895"; transcript_id "RvY_11895.1"; annotation "hypothetical protein."; Pfam "[E1_DerP2_DerF2] ML domain"; Scaffold007 rebuild exon 109439 109528 . - . gene_id "RvY_11895"; transcript_id "RvY_11895.1"; Scaffold007 rebuild exon 109617 109793 . - . gene_id "RvY_11895"; transcript_id "RvY_11895.1"; Scaffold007 rebuild exon 109888 109997 . - . gene_id "RvY_11895"; transcript_id "RvY_11895.1"; Scaffold007 rebuild exon 110100 110199 . - . gene_id "RvY_11895"; transcript_id "RvY_11895.1"; Scaffold007 rebuild transcript 111557 112165 . - . gene_id "RvY_11896"; transcript_id "RvY_11896.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 111557 112165 . - . gene_id "RvY_11896"; transcript_id "RvY_11896.1"; Scaffold007 rebuild transcript 111557 112165 . - . gene_id "RvY_11896"; transcript_id "RvY_11896.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 111557 111942 . - . gene_id "RvY_11896"; transcript_id "RvY_11896.2"; Scaffold007 rebuild exon 112018 112165 . - . gene_id "RvY_11896"; transcript_id "RvY_11896.2"; Scaffold007 rebuild transcript 118849 120928 . + . gene_id "RvY_11897"; transcript_id "RvY_11897.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 118849 118919 . + . gene_id "RvY_11897"; transcript_id "RvY_11897.1"; Scaffold007 rebuild exon 120484 120928 . + . gene_id "RvY_11897"; transcript_id "RvY_11897.1"; Scaffold007 rebuild transcript 120967 122096 . + . gene_id "RvY_11898"; transcript_id "RvY_11898.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 120967 120981 . + . gene_id "RvY_11898"; transcript_id "RvY_11898.1"; Scaffold007 rebuild exon 121095 121316 . + . gene_id "RvY_11898"; transcript_id "RvY_11898.1"; Scaffold007 rebuild exon 121701 122096 . + . gene_id "RvY_11898"; transcript_id "RvY_11898.1"; Scaffold007 rebuild transcript 124667 125101 . + . gene_id "RvY_11899"; transcript_id "RvY_11899.1"; annotation "hypothetical protein."; Pfam "[Thaumatin] Thaumatin family"; Scaffold007 rebuild exon 124667 124867 . + . gene_id "RvY_11899"; transcript_id "RvY_11899.1"; Scaffold007 rebuild exon 124949 125101 . + . gene_id "RvY_11899"; transcript_id "RvY_11899.1"; Scaffold007 rebuild transcript 126457 128243 . + . gene_id "RvY_11900"; transcript_id "RvY_11900.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 126457 126718 . + . gene_id "RvY_11900"; transcript_id "RvY_11900.1"; Scaffold007 rebuild exon 128077 128243 . + . gene_id "RvY_11900"; transcript_id "RvY_11900.1"; Scaffold007 rebuild transcript 128898 129137 . - . gene_id "RvY_11901"; transcript_id "RvY_11901.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 128898 129137 . - . gene_id "RvY_11901"; transcript_id "RvY_11901.1"; Scaffold007 rebuild transcript 130360 130545 . + . gene_id "RvY_11902"; transcript_id "RvY_11902.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 130360 130545 . + . gene_id "RvY_11902"; transcript_id "RvY_11902.1"; Scaffold007 rebuild transcript 134757 136259 . - . gene_id "RvY_11903"; transcript_id "RvY_11903.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold007 rebuild exon 134757 135585 . - . gene_id "RvY_11903"; transcript_id "RvY_11903.1"; Scaffold007 rebuild exon 135673 135950 . - . gene_id "RvY_11903"; transcript_id "RvY_11903.1"; Scaffold007 rebuild exon 136095 136259 . - . gene_id "RvY_11903"; transcript_id "RvY_11903.1"; Scaffold007 rebuild transcript 136631 138869 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 136631 136933 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild exon 137008 137092 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild exon 137154 137250 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild exon 137309 137407 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild exon 137468 137556 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild exon 137650 137726 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild exon 138810 138869 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.1"; Scaffold007 rebuild transcript 136631 137699 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 136631 136933 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; Scaffold007 rebuild exon 137008 137092 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; Scaffold007 rebuild exon 137154 137250 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; Scaffold007 rebuild exon 137309 137407 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; Scaffold007 rebuild exon 137468 137556 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; Scaffold007 rebuild exon 137650 137699 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.2"; Scaffold007 rebuild transcript 136631 137492 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 136631 136933 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.3"; Scaffold007 rebuild exon 137008 137092 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.3"; Scaffold007 rebuild exon 137154 137250 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.3"; Scaffold007 rebuild exon 137309 137492 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.3"; Scaffold007 rebuild transcript 136631 137492 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.4"; annotation "hypothetical protein."; Scaffold007 rebuild exon 136631 136933 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.4"; Scaffold007 rebuild exon 137008 137092 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.4"; Scaffold007 rebuild exon 137154 137250 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.4"; Scaffold007 rebuild exon 137309 137407 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.4"; Scaffold007 rebuild exon 137468 137492 . - . gene_id "RvY_11904"; transcript_id "RvY_11904.4"; Scaffold007 rebuild transcript 139502 140242 . + . gene_id "RvY_11905"; transcript_id "RvY_11905.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 139502 140242 . + . gene_id "RvY_11905"; transcript_id "RvY_11905.1"; Scaffold007 rebuild transcript 141088 141456 . + . gene_id "RvY_11906"; transcript_id "RvY_11906.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold007 rebuild exon 141088 141456 . + . gene_id "RvY_11906"; transcript_id "RvY_11906.1"; Scaffold007 rebuild transcript 144599 146035 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 144599 144829 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; Scaffold007 rebuild exon 144914 145030 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; Scaffold007 rebuild exon 145201 145256 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; Scaffold007 rebuild exon 145413 145491 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; Scaffold007 rebuild exon 145596 145724 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; Scaffold007 rebuild exon 145808 146035 . + . gene_id "RvY_11907"; transcript_id "RvY_11907.1"; Scaffold007 rebuild transcript 146524 147411 . + . gene_id "RvY_11908"; transcript_id "RvY_11908.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 146524 146918 . + . gene_id "RvY_11908"; transcript_id "RvY_11908.1"; Scaffold007 rebuild exon 147108 147411 . + . gene_id "RvY_11908"; transcript_id "RvY_11908.1"; Scaffold007 rebuild transcript 148326 150600 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; gene_name "STX1B_2_3"; annotation "putative Syntaxin-1A"; CDD "Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain"; KO "K08486"; similar_genes "STX1A_DROME(e-value:7.1e-50;bit-score:195.0)"; Scaffold007 rebuild exon 148326 148577 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 148900 149010 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 149189 149326 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 149560 149633 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 149739 149918 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 150054 150128 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 150206 150305 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 150377 150478 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild exon 150565 150600 . - . gene_id "RvY_11909"; transcript_id "RvY_11909.1"; Scaffold007 rebuild transcript 156284 158824 . + . gene_id "RvY_11910"; transcript_id "RvY_11910.1"; gene_name "STKc_MAPKKK"; annotation "hypothetical protein."; CDD "Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15."; Scaffold007 rebuild exon 156284 156614 . + . gene_id "RvY_11910"; transcript_id "RvY_11910.1"; Scaffold007 rebuild exon 156884 157276 . + . gene_id "RvY_11910"; transcript_id "RvY_11910.1"; Scaffold007 rebuild exon 157470 158030 . + . gene_id "RvY_11910"; transcript_id "RvY_11910.1"; Scaffold007 rebuild exon 158094 158824 . + . gene_id "RvY_11910"; transcript_id "RvY_11910.1"; Scaffold007 rebuild transcript 158992 159252 . - . gene_id "RvY_11911"; transcript_id "RvY_11911.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 158992 159252 . - . gene_id "RvY_11911"; transcript_id "RvY_11911.1"; Scaffold007 rebuild transcript 159843 161536 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; gene_name "CDK1"; annotation "putative Cell division control protein 2 cognate"; CDD "The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH."; EC "EC2.7.11.22"; KO "K02087"; similar_genes "CDC2C_DROME(e-value:1.5e-26;bit-score:117.0)"; Scaffold007 rebuild exon 159843 159944 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; Scaffold007 rebuild exon 160035 160185 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; Scaffold007 rebuild exon 160266 160435 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; Scaffold007 rebuild exon 160715 160885 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; Scaffold007 rebuild exon 161050 161327 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; Scaffold007 rebuild exon 161398 161536 . - . gene_id "RvY_11912"; transcript_id "RvY_11912.1"; Scaffold007 rebuild transcript 162296 163766 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; annotation "putative Coiled-coil domain-containing protein 94"; similar_genes "CCD94_HUMAN(e-value:1.5e-45;bit-score:180.0)"; Scaffold007 rebuild exon 162296 162319 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; Scaffold007 rebuild exon 162418 162518 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; Scaffold007 rebuild exon 162605 162636 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; Scaffold007 rebuild exon 162807 162919 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; Scaffold007 rebuild exon 162981 163297 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; Scaffold007 rebuild exon 163355 163766 . + . gene_id "RvY_11913"; transcript_id "RvY_11913.1"; Scaffold007 rebuild transcript 164140 164685 . - . gene_id "RvY_11914"; transcript_id "RvY_11914.1"; gene_name "ERV1"; annotation "putative FAD-linked sulfhydryl oxidase ALR"; CDD "Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]"; EC "EC1.8.3.2"; similar_genes "ALR_HUMAN(e-value:4.5e-43;bit-score:172.0)"; Scaffold007 rebuild exon 164140 164685 . - . gene_id "RvY_11914"; transcript_id "RvY_11914.1"; Scaffold007 rebuild transcript 168634 168855 . - . gene_id "RvY_11915"; transcript_id "RvY_11915.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 168634 168855 . - . gene_id "RvY_11915"; transcript_id "RvY_11915.1"; Scaffold007 rebuild transcript 169655 170137 . + . gene_id "RvY_11916"; transcript_id "RvY_11916.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 169655 170137 . + . gene_id "RvY_11916"; transcript_id "RvY_11916.1"; Scaffold007 rebuild transcript 170472 170810 . + . gene_id "RvY_11917"; transcript_id "RvY_11917.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 170472 170589 . + . gene_id "RvY_11917"; transcript_id "RvY_11917.1"; Scaffold007 rebuild exon 170665 170810 . + . gene_id "RvY_11917"; transcript_id "RvY_11917.1"; Scaffold007 rebuild transcript 171426 172065 . + . gene_id "RvY_11918"; transcript_id "RvY_11918.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 171426 171633 . + . gene_id "RvY_11918"; transcript_id "RvY_11918.1"; Scaffold007 rebuild exon 171698 172065 . + . gene_id "RvY_11918"; transcript_id "RvY_11918.1"; Scaffold007 rebuild transcript 174396 175085 . - . gene_id "RvY_11919"; transcript_id "RvY_11919.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 174396 174481 . - . gene_id "RvY_11919"; transcript_id "RvY_11919.1"; Scaffold007 rebuild exon 174542 174980 . - . gene_id "RvY_11919"; transcript_id "RvY_11919.1"; Scaffold007 rebuild exon 175059 175085 . - . gene_id "RvY_11919"; transcript_id "RvY_11919.1"; Scaffold007 rebuild transcript 176460 177087 . - . gene_id "RvY_11920"; transcript_id "RvY_11920.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 176460 176542 . - . gene_id "RvY_11920"; transcript_id "RvY_11920.1"; Scaffold007 rebuild exon 176605 176998 . - . gene_id "RvY_11920"; transcript_id "RvY_11920.1"; Scaffold007 rebuild exon 177061 177087 . - . gene_id "RvY_11920"; transcript_id "RvY_11920.1"; Scaffold007 rebuild transcript 180311 180870 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 180311 180401 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.1"; Scaffold007 rebuild exon 180505 180618 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.1"; Scaffold007 rebuild exon 180785 180870 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.1"; Scaffold007 rebuild transcript 180501 180870 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 180501 180618 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.2"; Scaffold007 rebuild exon 180785 180870 . - . gene_id "RvY_11921"; transcript_id "RvY_11921.2"; Scaffold007 rebuild transcript 182726 183076 . - . gene_id "RvY_11922"; transcript_id "RvY_11922.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold007 rebuild exon 182726 183076 . - . gene_id "RvY_11922"; transcript_id "RvY_11922.1"; Scaffold007 rebuild transcript 183255 183692 . - . gene_id "RvY_11923"; transcript_id "RvY_11923.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 183255 183692 . - . gene_id "RvY_11923"; transcript_id "RvY_11923.1"; Scaffold007 rebuild transcript 183753 187078 . - . gene_id "RvY_11924"; transcript_id "RvY_11924.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 183753 183960 . - . gene_id "RvY_11924"; transcript_id "RvY_11924.1"; Scaffold007 rebuild exon 186285 186603 . - . gene_id "RvY_11924"; transcript_id "RvY_11924.1"; Scaffold007 rebuild exon 186853 187078 . - . gene_id "RvY_11924"; transcript_id "RvY_11924.1"; Scaffold007 rebuild transcript 184853 185914 . + . gene_id "RvY_11925"; transcript_id "RvY_11925.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 184853 185141 . + . gene_id "RvY_11925"; transcript_id "RvY_11925.1"; Scaffold007 rebuild exon 185230 185612 . + . gene_id "RvY_11925"; transcript_id "RvY_11925.1"; Scaffold007 rebuild exon 185777 185914 . + . gene_id "RvY_11925"; transcript_id "RvY_11925.1"; Scaffold007 rebuild transcript 189015 189599 . + . gene_id "RvY_11926"; transcript_id "RvY_11926.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 189015 189599 . + . gene_id "RvY_11926"; transcript_id "RvY_11926.1"; Scaffold007 rebuild transcript 190456 191644 . - . gene_id "RvY_11927"; transcript_id "RvY_11927.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 190456 190496 . - . gene_id "RvY_11927"; transcript_id "RvY_11927.1"; Scaffold007 rebuild exon 190570 190945 . - . gene_id "RvY_11927"; transcript_id "RvY_11927.1"; Scaffold007 rebuild exon 191149 191221 . - . gene_id "RvY_11927"; transcript_id "RvY_11927.1"; Scaffold007 rebuild exon 191283 191358 . - . gene_id "RvY_11927"; transcript_id "RvY_11927.1"; Scaffold007 rebuild exon 191494 191644 . - . gene_id "RvY_11927"; transcript_id "RvY_11927.1"; Scaffold007 rebuild transcript 192091 194738 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.1"; product "MRE11C"; gene_name "MRE11"; annotation "MRE11C | putative Double-strand break repair protein MRE11"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[Mre11_DNA_bind] Mre11 DNA-binding presumed domain"; CDD "DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria."; KO "K10865"; similar_genes "MRE11_XENLA(e-value:2.7e-32;bit-score:136.0)"; Scaffold007 rebuild exon 192091 192448 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.1"; Scaffold007 rebuild exon 192552 192875 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.1"; Scaffold007 rebuild exon 193171 193766 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.1"; Scaffold007 rebuild exon 194012 194266 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.1"; Scaffold007 rebuild exon 194577 194738 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.1"; Scaffold007 rebuild transcript 192091 194287 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.2"; product "MRE11C"; gene_name "MRE11"; annotation "MRE11C | putative Double-strand break repair protein MRE11"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[Mre11_DNA_bind] Mre11 DNA-binding presumed domain"; CDD "DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria."; KO "K10865"; similar_genes "MRE11_XENLA(e-value:2.7e-32;bit-score:136.0)"; Scaffold007 rebuild exon 192091 192448 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.2"; Scaffold007 rebuild exon 192552 192875 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.2"; Scaffold007 rebuild exon 193171 193766 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.2"; Scaffold007 rebuild exon 194012 194287 . + . gene_id "RvY_11928"; transcript_id "RvY_11928.2"; Scaffold007 rebuild transcript 195441 196229 . + . gene_id "RvY_11929"; transcript_id "RvY_11929.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold007 rebuild exon 195441 195824 . + . gene_id "RvY_11929"; transcript_id "RvY_11929.1"; Scaffold007 rebuild exon 196074 196229 . + . gene_id "RvY_11929"; transcript_id "RvY_11929.1"; Scaffold007 rebuild transcript 196517 198336 . - . gene_id "RvY_11930"; transcript_id "RvY_11930.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 196517 196777 . - . gene_id "RvY_11930"; transcript_id "RvY_11930.1"; Scaffold007 rebuild exon 196847 196964 . - . gene_id "RvY_11930"; transcript_id "RvY_11930.1"; Scaffold007 rebuild exon 197025 197394 . - . gene_id "RvY_11930"; transcript_id "RvY_11930.1"; Scaffold007 rebuild exon 197577 198336 . - . gene_id "RvY_11930"; transcript_id "RvY_11930.1"; Scaffold007 rebuild transcript 198832 199746 . - . gene_id "RvY_11931"; transcript_id "RvY_11931.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 198832 199031 . - . gene_id "RvY_11931"; transcript_id "RvY_11931.1"; Scaffold007 rebuild exon 199111 199498 . - . gene_id "RvY_11931"; transcript_id "RvY_11931.1"; Scaffold007 rebuild exon 199615 199746 . - . gene_id "RvY_11931"; transcript_id "RvY_11931.1"; Scaffold007 rebuild transcript 199875 200192 . - . gene_id "RvY_11932"; transcript_id "RvY_11932.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 199875 200192 . - . gene_id "RvY_11932"; transcript_id "RvY_11932.1"; Scaffold007 rebuild transcript 199775 200168 . - . gene_id "RvY_11932"; transcript_id "RvY_11932.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 199775 199824 . - . gene_id "RvY_11932"; transcript_id "RvY_11932.2"; Scaffold007 rebuild exon 199913 200168 . - . gene_id "RvY_11932"; transcript_id "RvY_11932.2"; Scaffold007 rebuild transcript 200890 201108 . - . gene_id "RvY_11933"; transcript_id "RvY_11933.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 200890 201108 . - . gene_id "RvY_11933"; transcript_id "RvY_11933.1"; Scaffold007 rebuild transcript 202968 204904 . - . gene_id "RvY_11934"; transcript_id "RvY_11934.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold007 rebuild exon 202968 204091 . - . gene_id "RvY_11934"; transcript_id "RvY_11934.1"; Scaffold007 rebuild exon 204454 204592 . - . gene_id "RvY_11934"; transcript_id "RvY_11934.1"; Scaffold007 rebuild exon 204675 204783 . - . gene_id "RvY_11934"; transcript_id "RvY_11934.1"; Scaffold007 rebuild exon 204861 204904 . - . gene_id "RvY_11934"; transcript_id "RvY_11934.1"; Scaffold007 rebuild transcript 205333 205962 . - . gene_id "RvY_11935"; transcript_id "RvY_11935.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 205333 205962 . - . gene_id "RvY_11935"; transcript_id "RvY_11935.1"; Scaffold007 rebuild transcript 208084 208686 . + . gene_id "RvY_11936"; transcript_id "RvY_11936.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 208084 208686 . + . gene_id "RvY_11936"; transcript_id "RvY_11936.1"; Scaffold007 rebuild transcript 210214 210378 . + . gene_id "RvY_11937"; transcript_id "RvY_11937.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 210214 210378 . + . gene_id "RvY_11937"; transcript_id "RvY_11937.1"; Scaffold007 rebuild transcript 210635 211357 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 210635 210693 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.1"; Scaffold007 rebuild exon 210839 211244 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.1"; Scaffold007 rebuild exon 211328 211357 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.1"; Scaffold007 rebuild transcript 210635 211357 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 210635 210690 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.2"; Scaffold007 rebuild exon 210839 211244 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.2"; Scaffold007 rebuild exon 211328 211357 . - . gene_id "RvY_11938"; transcript_id "RvY_11938.2"; Scaffold007 rebuild transcript 211842 212386 . - . gene_id "RvY_11939"; transcript_id "RvY_11939.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 211842 212258 . - . gene_id "RvY_11939"; transcript_id "RvY_11939.1"; Scaffold007 rebuild exon 212351 212386 . - . gene_id "RvY_11939"; transcript_id "RvY_11939.1"; Scaffold007 rebuild transcript 212795 213968 . - . gene_id "RvY_11940"; transcript_id "RvY_11940.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 212795 213465 . - . gene_id "RvY_11940"; transcript_id "RvY_11940.1"; Scaffold007 rebuild exon 213539 213968 . - . gene_id "RvY_11940"; transcript_id "RvY_11940.1"; Scaffold007 rebuild transcript 215324 216388 . - . gene_id "RvY_11941"; transcript_id "RvY_11941.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 215324 216388 . - . gene_id "RvY_11941"; transcript_id "RvY_11941.1"; Scaffold007 rebuild transcript 215327 216388 . - . gene_id "RvY_11941"; transcript_id "RvY_11941.2"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 215327 216388 . - . gene_id "RvY_11941"; transcript_id "RvY_11941.2"; Scaffold007 rebuild transcript 215331 215666 . + . gene_id "RvY_11942"; transcript_id "RvY_11942.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 215331 215666 . + . gene_id "RvY_11942"; transcript_id "RvY_11942.1"; Scaffold007 rebuild transcript 221504 222021 . + . gene_id "RvY_11943"; transcript_id "RvY_11943.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 221504 221598 . + . gene_id "RvY_11943"; transcript_id "RvY_11943.1"; Scaffold007 rebuild exon 221883 222021 . + . gene_id "RvY_11943"; transcript_id "RvY_11943.1"; Scaffold007 rebuild transcript 224354 224906 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 224354 224545 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.1"; Scaffold007 rebuild exon 224607 224906 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.1"; Scaffold007 rebuild transcript 224354 227368 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 224354 224545 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.2"; Scaffold007 rebuild exon 224607 224765 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.2"; Scaffold007 rebuild exon 227297 227368 . + . gene_id "RvY_11944"; transcript_id "RvY_11944.2"; Scaffold007 rebuild transcript 226379 226794 . - . gene_id "RvY_11945"; transcript_id "RvY_11945.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 226379 226410 . - . gene_id "RvY_11945"; transcript_id "RvY_11945.1"; Scaffold007 rebuild exon 226485 226794 . - . gene_id "RvY_11945"; transcript_id "RvY_11945.1"; Scaffold007 rebuild transcript 229340 231575 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Glyco_hydro_19] Chitinase class I"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; similar_genes "UNC51_CAEEL(e-value:1.2e-11;bit-score:68.0)"; Scaffold007 rebuild exon 229340 229468 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; Scaffold007 rebuild exon 229829 229924 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; Scaffold007 rebuild exon 229986 230033 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; Scaffold007 rebuild exon 230116 230188 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; Scaffold007 rebuild exon 230295 230882 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; Scaffold007 rebuild exon 231007 231575 . + . gene_id "RvY_11946"; transcript_id "RvY_11946.1"; Scaffold007 rebuild transcript 235066 235242 . + . gene_id "RvY_11947"; transcript_id "RvY_11947.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 235066 235242 . + . gene_id "RvY_11947"; transcript_id "RvY_11947.1"; Scaffold007 rebuild transcript 237524 238287 . + . gene_id "RvY_11948"; transcript_id "RvY_11948.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M13_N] Peptidase family M13"; Scaffold007 rebuild exon 237524 237581 . + . gene_id "RvY_11948"; transcript_id "RvY_11948.1"; Scaffold007 rebuild exon 237806 237892 . + . gene_id "RvY_11948"; transcript_id "RvY_11948.1"; Scaffold007 rebuild exon 237959 238287 . + . gene_id "RvY_11948"; transcript_id "RvY_11948.1"; Scaffold007 rebuild transcript 238489 239912 . + . gene_id "RvY_11949"; transcript_id "RvY_11949.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M13] Peptidase family M13|[Peptidase_M13_N] Peptidase family M13"; EC "EC3.4.24.-"; similar_genes "NEPL1_CAEEL(e-value:5.1e-06;bit-score:49.0)"; Scaffold007 rebuild exon 238489 238626 . + . gene_id "RvY_11949"; transcript_id "RvY_11949.1"; Scaffold007 rebuild exon 238697 238790 . + . gene_id "RvY_11949"; transcript_id "RvY_11949.1"; Scaffold007 rebuild exon 239379 239592 . + . gene_id "RvY_11949"; transcript_id "RvY_11949.1"; Scaffold007 rebuild exon 239630 239912 . + . gene_id "RvY_11949"; transcript_id "RvY_11949.1"; Scaffold007 rebuild transcript 240235 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; gene_name "(1,2,3)COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "(1,2,3)Predicted flavoprotein [General function prediction only]"; Scaffold007 rebuild exon 240235 240255 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; Scaffold007 rebuild exon 240363 240493 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; Scaffold007 rebuild exon 240572 240655 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; Scaffold007 rebuild exon 240767 240807 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; Scaffold007 rebuild exon 240872 241104 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; Scaffold007 rebuild exon 241223 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.1"; Scaffold007 rebuild transcript 240235 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.2"; gene_name "(1,2,3)COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "(1,2,3)Predicted flavoprotein [General function prediction only]"; Scaffold007 rebuild exon 240235 240255 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.2"; Scaffold007 rebuild exon 240363 240493 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.2"; Scaffold007 rebuild exon 240572 240655 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.2"; Scaffold007 rebuild exon 240843 241104 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.2"; Scaffold007 rebuild exon 241223 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.2"; Scaffold007 rebuild transcript 240674 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.3"; gene_name "(1,2,3)COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "(1,2,3)Predicted flavoprotein [General function prediction only]"; Scaffold007 rebuild exon 240674 240681 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.3"; Scaffold007 rebuild exon 240767 240807 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.3"; Scaffold007 rebuild exon 240872 241104 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.3"; Scaffold007 rebuild exon 241223 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.3"; Scaffold007 rebuild transcript 241013 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.4"; gene_name "(1,2,3)COG0431"; annotation "hypothetical protein."; Pfam "[FMN_red] NADPH-dependent FMN reductase"; CDD "(1,2,3)Predicted flavoprotein [General function prediction only]"; Scaffold007 rebuild exon 241013 241318 . - . gene_id "RvY_11950"; transcript_id "RvY_11950.4"; Scaffold007 rebuild transcript 241980 243512 . - . gene_id "RvY_11951"; transcript_id "RvY_11951.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 241980 242440 . - . gene_id "RvY_11951"; transcript_id "RvY_11951.1"; Scaffold007 rebuild exon 242607 243173 . - . gene_id "RvY_11951"; transcript_id "RvY_11951.1"; Scaffold007 rebuild exon 243464 243512 . - . gene_id "RvY_11951"; transcript_id "RvY_11951.1"; Scaffold007 rebuild transcript 244506 248835 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; gene_name "MCM3"; annotation "Maternal DNA replication licensing factor mcm3"; Pfam "[MCM] MCM2/3/5 family|[Mg_chelatase] Magnesium chelatase, subunit ChlI"; CDD "minichromosome maintenance proteins."; KO "K02541"; similar_genes "MCM3M_XENLA(e-value:4.5e-96;bit-score:348.0)"; Scaffold007 rebuild exon 244506 244870 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 245167 245257 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 245394 245721 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 246064 246323 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 246459 246547 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 246637 246973 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 247330 247637 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 247749 247925 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 248096 248235 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 248312 248434 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild exon 248615 248835 . - . gene_id "RvY_11952"; transcript_id "RvY_11952.1"; Scaffold007 rebuild transcript 250022 250625 . + . gene_id "RvY_11953"; transcript_id "RvY_11953.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 250022 250042 . + . gene_id "RvY_11953"; transcript_id "RvY_11953.1"; Scaffold007 rebuild exon 250123 250365 . + . gene_id "RvY_11953"; transcript_id "RvY_11953.1"; Scaffold007 rebuild exon 250527 250625 . + . gene_id "RvY_11953"; transcript_id "RvY_11953.1"; Scaffold007 rebuild transcript 251029 251421 . + . gene_id "RvY_11954"; transcript_id "RvY_11954.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 251029 251421 . + . gene_id "RvY_11954"; transcript_id "RvY_11954.1"; Scaffold007 rebuild transcript 251425 252151 . - . gene_id "RvY_11955"; transcript_id "RvY_11955.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 251425 251543 . - . gene_id "RvY_11955"; transcript_id "RvY_11955.1"; Scaffold007 rebuild exon 251636 251809 . - . gene_id "RvY_11955"; transcript_id "RvY_11955.1"; Scaffold007 rebuild exon 251891 251953 . - . gene_id "RvY_11955"; transcript_id "RvY_11955.1"; Scaffold007 rebuild exon 252028 252151 . - . gene_id "RvY_11955"; transcript_id "RvY_11955.1"; Scaffold007 rebuild transcript 254468 255676 . - . gene_id "RvY_11956"; transcript_id "RvY_11956.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 254468 254839 . - . gene_id "RvY_11956"; transcript_id "RvY_11956.1"; Scaffold007 rebuild exon 255019 255111 . - . gene_id "RvY_11956"; transcript_id "RvY_11956.1"; Scaffold007 rebuild exon 255251 255676 . - . gene_id "RvY_11956"; transcript_id "RvY_11956.1"; Scaffold007 rebuild transcript 256815 260559 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain"; Scaffold007 rebuild exon 256815 257036 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 257106 257374 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 257460 257702 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 257842 257978 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 258044 258235 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 258294 258366 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 258437 258549 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 258840 258930 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 258995 259185 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 259364 259617 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 259686 259900 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 260187 260329 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild exon 260387 260559 . + . gene_id "RvY_11957"; transcript_id "RvY_11957.1"; Scaffold007 rebuild transcript 261755 264248 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; gene_name "NhaP"; annotation "hypothetical protein."; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; similar_genes "NHDC2_XENTR(e-value:2.4e-16;bit-score:83.0)"; Scaffold007 rebuild exon 261755 261866 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 261951 262064 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 262153 262470 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 262537 262792 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 262858 263048 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 263118 263224 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 263384 263899 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild exon 264003 264248 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.1"; Scaffold007 rebuild transcript 261755 263074 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.2"; gene_name "NhaP"; annotation "hypothetical protein."; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; similar_genes "NHDC2_XENTR(e-value:2.4e-16;bit-score:83.0)"; Scaffold007 rebuild exon 261755 261866 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.2"; Scaffold007 rebuild exon 261951 262064 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.2"; Scaffold007 rebuild exon 262153 262470 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.2"; Scaffold007 rebuild exon 262537 262792 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.2"; Scaffold007 rebuild exon 262858 263074 . + . gene_id "RvY_11958"; transcript_id "RvY_11958.2"; Scaffold007 rebuild transcript 266558 269163 . - . gene_id "RvY_11959"; transcript_id "RvY_11959.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 266558 266789 . - . gene_id "RvY_11959"; transcript_id "RvY_11959.1"; Scaffold007 rebuild exon 268422 268677 . - . gene_id "RvY_11959"; transcript_id "RvY_11959.1"; Scaffold007 rebuild exon 268788 268968 . - . gene_id "RvY_11959"; transcript_id "RvY_11959.1"; Scaffold007 rebuild exon 269071 269163 . - . gene_id "RvY_11959"; transcript_id "RvY_11959.1"; Scaffold007 rebuild transcript 269546 269791 . + . gene_id "RvY_11960"; transcript_id "RvY_11960.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 269546 269791 . + . gene_id "RvY_11960"; transcript_id "RvY_11960.1"; Scaffold007 rebuild transcript 270228 270951 . - . gene_id "RvY_11961"; transcript_id "RvY_11961.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 270228 270424 . - . gene_id "RvY_11961"; transcript_id "RvY_11961.1"; Scaffold007 rebuild exon 270430 270581 . - . gene_id "RvY_11961"; transcript_id "RvY_11961.1"; Scaffold007 rebuild exon 270887 270951 . - . gene_id "RvY_11961"; transcript_id "RvY_11961.1"; Scaffold007 rebuild transcript 270963 271699 . + . gene_id "RvY_11962"; transcript_id "RvY_11962.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 270963 271378 . + . gene_id "RvY_11962"; transcript_id "RvY_11962.1"; Scaffold007 rebuild exon 271408 271699 . + . gene_id "RvY_11962"; transcript_id "RvY_11962.1"; Scaffold007 rebuild transcript 272037 274603 . - . gene_id "RvY_11963"; transcript_id "RvY_11963.1"; gene_name "pcaJ_scoB_fam"; annotation "Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial"; Pfam "[CoA_trans] Coenzyme A transferase"; CDD "3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144."; EC "EC2.8.3.5"; KO "K01027"; similar_genes "SCOT1_RAT(e-value:9.9e-58;bit-score:221.0)"; Scaffold007 rebuild exon 272037 272354 . - . gene_id "RvY_11963"; transcript_id "RvY_11963.1"; Scaffold007 rebuild exon 272622 272971 . - . gene_id "RvY_11963"; transcript_id "RvY_11963.1"; Scaffold007 rebuild exon 273219 273424 . - . gene_id "RvY_11963"; transcript_id "RvY_11963.1"; Scaffold007 rebuild exon 273496 273769 . - . gene_id "RvY_11963"; transcript_id "RvY_11963.1"; Scaffold007 rebuild exon 274105 274603 . - . gene_id "RvY_11963"; transcript_id "RvY_11963.1"; Scaffold007 rebuild transcript 275547 276301 . - . gene_id "RvY_11964"; transcript_id "RvY_11964.1"; gene_name "SNRPB"; annotation "putative Small nuclear ribonucleoprotein-associated protein B"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K11086"; similar_genes "RSMB_DROME(e-value:3.5e-45;bit-score:179.0)"; Scaffold007 rebuild exon 275547 275894 . - . gene_id "RvY_11964"; transcript_id "RvY_11964.1"; Scaffold007 rebuild exon 276035 276301 . - . gene_id "RvY_11964"; transcript_id "RvY_11964.1"; Scaffold007 rebuild transcript 277036 278577 . - . gene_id "RvY_11965"; transcript_id "RvY_11965.1"; gene_name "PRK12678"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "transcription termination factor Rho; Provisional"; similar_genes "GTAN_DICDI(e-value:4.5e-09;bit-score:59.0)"; Scaffold007 rebuild exon 277036 277844 . - . gene_id "RvY_11965"; transcript_id "RvY_11965.1"; Scaffold007 rebuild exon 278151 278577 . - . gene_id "RvY_11965"; transcript_id "RvY_11965.1"; Scaffold007 rebuild transcript 279399 281547 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; annotation "hypothetical protein."; Pfam "[PHR]|[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; similar_genes "BTBD6_HUMAN(e-value:1.5e-09;bit-score:61.0)"; Scaffold007 rebuild exon 279399 279566 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 279637 279874 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 279931 280112 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 280169 280304 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 280398 280576 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 280762 280921 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 280996 281121 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild exon 281189 281547 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.1"; Scaffold007 rebuild transcript 279399 281615 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; annotation "hypothetical protein."; Pfam "[PHR]|[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; similar_genes "BTBD6_HUMAN(e-value:1.5e-09;bit-score:61.0)"; Scaffold007 rebuild exon 279399 279566 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 279637 279874 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 279931 280112 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 280169 280304 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 280398 280576 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 280762 280921 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 280996 281121 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 281189 281474 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild exon 281582 281615 . - . gene_id "RvY_11966"; transcript_id "RvY_11966.2"; Scaffold007 rebuild transcript 282175 284203 . + . gene_id "RvY_11967"; transcript_id "RvY_11967.1"; gene_name "atoA"; annotation "Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial"; Pfam "[CoA_trans] Coenzyme A transferase"; CDD "3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144."; EC "EC2.8.3.5|EC2.8.3.8"; KO "K01035"; similar_genes "SCOT1_RAT(e-value:2.8e-53;bit-score:206.0)"; Scaffold007 rebuild exon 282175 282694 . + . gene_id "RvY_11967"; transcript_id "RvY_11967.1"; Scaffold007 rebuild exon 282911 283184 . + . gene_id "RvY_11967"; transcript_id "RvY_11967.1"; Scaffold007 rebuild exon 283243 283825 . + . gene_id "RvY_11967"; transcript_id "RvY_11967.1"; Scaffold007 rebuild exon 283958 284203 . + . gene_id "RvY_11967"; transcript_id "RvY_11967.1"; Scaffold007 rebuild transcript 284736 287408 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; gene_name "ANK"; annotation "putative Ankyrin repeat domain-containing protein 13A"; Pfam "[GPCR_chapero_1] GPCR-chaperone|[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "AN13A_HUMAN(e-value:2.1e-32;bit-score:137.0)"; Scaffold007 rebuild exon 284736 284879 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild exon 284934 285296 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild exon 285479 285895 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild exon 286053 286208 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild exon 286273 286549 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild exon 286916 287177 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild exon 287246 287408 . + . gene_id "RvY_11968"; transcript_id "RvY_11968.1"; Scaffold007 rebuild transcript 287943 291978 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; gene_name "COG5369"; annotation "hypothetical protein."; Pfam "[Xpo1] Exportin 1-like protein|[HEAT_EZ] HEAT-like repeat"; CDD "Uncharacterized conserved protein [Function unknown]"; Scaffold007 rebuild exon 287943 287982 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 288072 288165 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 288238 288525 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 288615 288891 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 289563 289655 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 289720 290070 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 290298 290513 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 290617 291042 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 291103 291364 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 291588 291659 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 291730 291809 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild exon 291922 291978 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.1"; Scaffold007 rebuild transcript 288068 291978 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; gene_name "COG5369"; annotation "hypothetical protein."; Pfam "[Xpo1] Exportin 1-like protein|[HEAT_EZ] HEAT-like repeat"; CDD "Uncharacterized conserved protein [Function unknown]"; Scaffold007 rebuild exon 288068 288165 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 288238 288525 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 288615 288891 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 289563 289655 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 289720 290070 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 290298 290513 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 290617 291042 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 291103 291364 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 291588 291659 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 291730 291809 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild exon 291922 291978 . - . gene_id "RvY_11969"; transcript_id "RvY_11969.2"; Scaffold007 rebuild transcript 291996 292510 . - . gene_id "RvY_11970"; transcript_id "RvY_11970.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 291996 292095 . - . gene_id "RvY_11970"; transcript_id "RvY_11970.1"; Scaffold007 rebuild exon 292284 292510 . - . gene_id "RvY_11970"; transcript_id "RvY_11970.1"; Scaffold007 rebuild transcript 292417 293995 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; gene_name "UAA"; annotation "hypothetical protein."; Pfam "[TPT] Triose-phosphate Transporter family|[UAA] UAA transporter family|[EmrE] Multidrug resistance efflux transporter|[EamA] EamA-like transporter family"; CDD "UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine."; KO "K15275"; similar_genes "S35B1_XENLA(e-value:2.2e-19;bit-score:93.0)"; Scaffold007 rebuild exon 292417 292640 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild exon 292819 292913 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild exon 292977 293104 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild exon 293190 293381 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild exon 293444 293570 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild exon 293640 293746 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild exon 293801 293995 . + . gene_id "RvY_11971"; transcript_id "RvY_11971.1"; Scaffold007 rebuild transcript 295525 308748 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; gene_name "NF1"; annotation "Neurofibromin"; Pfam "[CRAL_TRIO_2] Divergent CRAL/TRIO domain|[RasGAP] GTPase-activator protein for Ras-like GTPase"; CDD "Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development."; KO "K08052"; similar_genes "NF1_HUMAN(e-value:3.2e-192;bit-score:668.0)"; Scaffold007 rebuild exon 295525 295659 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 296056 296842 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 297051 297179 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 297256 297506 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 297817 298165 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 298410 298732 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 298925 299171 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 299251 299742 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 299886 300153 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 300338 300466 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 300534 300777 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 301004 301439 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 301619 301818 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 301892 302007 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 302271 302809 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 302879 303260 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 303334 303500 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 303563 303975 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 304115 304366 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 304567 304938 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 305366 305886 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 306233 306568 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 306824 306981 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 307145 307511 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 307617 307874 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 307936 308125 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild exon 308446 308748 . + . gene_id "RvY_11972"; transcript_id "RvY_11972.1"; Scaffold007 rebuild transcript 309648 311637 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 309648 309850 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 309939 309980 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 310041 310067 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 310144 310324 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 310386 310472 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 310553 310702 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 310770 310991 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild exon 311206 311637 . + . gene_id "RvY_11973"; transcript_id "RvY_11973.1"; Scaffold007 rebuild transcript 312082 316518 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold007 rebuild exon 312082 312201 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 312279 312333 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 312420 312608 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 312676 312920 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 312988 313132 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 313201 313393 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 313462 313536 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 313597 313686 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 313759 313879 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 314168 314268 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 314350 314436 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 314519 314567 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 314629 314968 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 315038 315140 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 315227 315266 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild exon 316378 316518 . - . gene_id "RvY_11974"; transcript_id "RvY_11974.1"; Scaffold007 rebuild transcript 317878 318165 . + . gene_id "RvY_11975"; transcript_id "RvY_11975.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 317878 318165 . + . gene_id "RvY_11975"; transcript_id "RvY_11975.1"; Scaffold007 rebuild transcript 318544 318936 . - . gene_id "RvY_11976"; transcript_id "RvY_11976.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 318544 318936 . - . gene_id "RvY_11976"; transcript_id "RvY_11976.1"; Scaffold007 rebuild transcript 319971 320922 . - . gene_id "RvY_11977"; transcript_id "RvY_11977.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 319971 320287 . - . gene_id "RvY_11977"; transcript_id "RvY_11977.1"; Scaffold007 rebuild exon 320357 320644 . - . gene_id "RvY_11977"; transcript_id "RvY_11977.1"; Scaffold007 rebuild exon 320730 320922 . - . gene_id "RvY_11977"; transcript_id "RvY_11977.1"; Scaffold007 rebuild transcript 324762 326057 . - . gene_id "RvY_11978"; transcript_id "RvY_11978.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold007 rebuild exon 324762 324878 . - . gene_id "RvY_11978"; transcript_id "RvY_11978.1"; Scaffold007 rebuild exon 325716 326057 . - . gene_id "RvY_11978"; transcript_id "RvY_11978.1"; Scaffold007 rebuild transcript 326578 327968 . + . gene_id "RvY_11979"; transcript_id "RvY_11979.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 326578 327117 . + . gene_id "RvY_11979"; transcript_id "RvY_11979.1"; Scaffold007 rebuild exon 327368 327601 . + . gene_id "RvY_11979"; transcript_id "RvY_11979.1"; Scaffold007 rebuild exon 327762 327968 . + . gene_id "RvY_11979"; transcript_id "RvY_11979.1"; Scaffold007 rebuild transcript 329657 330089 . - . gene_id "RvY_11980"; transcript_id "RvY_11980.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 329657 329778 . - . gene_id "RvY_11980"; transcript_id "RvY_11980.1"; Scaffold007 rebuild exon 329939 330089 . - . gene_id "RvY_11980"; transcript_id "RvY_11980.1"; Scaffold007 rebuild transcript 332481 334796 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; gene_name "RGS"; annotation "hypothetical protein."; Pfam "[RGS] Regulator of G protein signaling domain"; CDD "Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits."; Scaffold007 rebuild exon 332481 332547 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 332606 332974 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 333033 333216 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 333293 333559 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 333613 333757 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 333839 333965 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 334035 334302 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 rebuild exon 334583 334796 . + . gene_id "RvY_11981"; transcript_id "RvY_11981.1"; Scaffold007 cdses transcript 335029 336904 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; annotation "hypothetical protein."; Scaffold007 cdses exon 335029 335148 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; Scaffold007 cdses exon 335217 335327 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; Scaffold007 cdses exon 335392 335478 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; Scaffold007 cdses exon 335714 335849 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; Scaffold007 cdses exon 336241 336856 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; Scaffold007 cdses exon 336901 336904 . + . gene_id "RvY_11982"; transcript_id "RvY_11982.1"; Scaffold007 rebuild transcript 335065 336458 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.1"; gene_name "RNF5"; annotation "E3 ubiquitin-protein ligase RNF5 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.19"; KO "K10666"; similar_genes "RN185_CHICK(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 335065 335150 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.1"; Scaffold007 rebuild exon 335219 335327 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.1"; Scaffold007 rebuild exon 335392 335476 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.1"; Scaffold007 rebuild exon 335712 335843 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.1"; Scaffold007 rebuild exon 336238 336458 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.1"; Scaffold007 rebuild transcript 335211 336458 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.2"; gene_name "RNF5"; annotation "E3 ubiquitin-protein ligase RNF5 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)|[zf-RING_LisH] RING-type zinc-finger, LisH dimerisation motif"; CDD "RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.19"; KO "K10666"; similar_genes "RN185_CHICK(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 335211 335327 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.2"; Scaffold007 rebuild exon 335392 335476 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.2"; Scaffold007 rebuild exon 335712 335843 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.2"; Scaffold007 rebuild exon 336238 336458 . - . gene_id "RvY_11983"; transcript_id "RvY_11983.2"; Scaffold007 rebuild transcript 337310 337961 . - . gene_id "RvY_11984"; transcript_id "RvY_11984.1"; gene_name "NDUFA8"; annotation "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 8 [EC:1.6.5.3 1.6.99.3]"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03952"; similar_genes "NDUA8_PONAB(e-value:1.9e-22;bit-score:104.0)"; Scaffold007 rebuild exon 337310 337529 . - . gene_id "RvY_11984"; transcript_id "RvY_11984.1"; Scaffold007 rebuild exon 337587 337762 . - . gene_id "RvY_11984"; transcript_id "RvY_11984.1"; Scaffold007 rebuild exon 337833 337961 . - . gene_id "RvY_11984"; transcript_id "RvY_11984.1"; Scaffold007 rebuild transcript 338367 338480 . + . gene_id "RvY_11985"; transcript_id "RvY_11985.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 338367 338480 . + . gene_id "RvY_11985"; transcript_id "RvY_11985.1"; Scaffold007 rebuild transcript 339031 339787 . + . gene_id "RvY_11986"; transcript_id "RvY_11986.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 339031 339329 . + . gene_id "RvY_11986"; transcript_id "RvY_11986.1"; Scaffold007 rebuild exon 339607 339787 . + . gene_id "RvY_11986"; transcript_id "RvY_11986.1"; Scaffold007 rebuild transcript 340401 341982 . - . gene_id "RvY_11987"; transcript_id "RvY_11987.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 340401 340541 . - . gene_id "RvY_11987"; transcript_id "RvY_11987.1"; Scaffold007 rebuild exon 340823 340897 . - . gene_id "RvY_11987"; transcript_id "RvY_11987.1"; Scaffold007 rebuild exon 341728 341982 . - . gene_id "RvY_11987"; transcript_id "RvY_11987.1"; Scaffold007 rebuild transcript 350964 351562 . + . gene_id "RvY_11988"; transcript_id "RvY_11988.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 350964 351267 . + . gene_id "RvY_11988"; transcript_id "RvY_11988.1"; Scaffold007 rebuild exon 351279 351562 . + . gene_id "RvY_11988"; transcript_id "RvY_11988.1"; Scaffold007 rebuild transcript 351632 352273 . + . gene_id "RvY_11989"; transcript_id "RvY_11989.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 351632 352273 . + . gene_id "RvY_11989"; transcript_id "RvY_11989.1"; Scaffold007 rebuild transcript 352444 353526 . + . gene_id "RvY_11990"; transcript_id "RvY_11990.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 352444 353431 . + . gene_id "RvY_11990"; transcript_id "RvY_11990.1"; Scaffold007 rebuild exon 353501 353526 . + . gene_id "RvY_11990"; transcript_id "RvY_11990.1"; Scaffold007 rebuild transcript 356790 357321 . + . gene_id "RvY_11991"; transcript_id "RvY_11991.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 356790 356938 . + . gene_id "RvY_11991"; transcript_id "RvY_11991.1"; Scaffold007 rebuild exon 357012 357321 . + . gene_id "RvY_11991"; transcript_id "RvY_11991.1"; Scaffold007 rebuild transcript 357568 358138 . + . gene_id "RvY_11992"; transcript_id "RvY_11992.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 357568 357631 . + . gene_id "RvY_11992"; transcript_id "RvY_11992.1"; Scaffold007 rebuild exon 357732 358138 . + . gene_id "RvY_11992"; transcript_id "RvY_11992.1"; Scaffold007 rebuild transcript 358262 358486 . - . gene_id "RvY_11993"; transcript_id "RvY_11993.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 358262 358486 . - . gene_id "RvY_11993"; transcript_id "RvY_11993.1"; Scaffold007 rebuild transcript 358971 359627 . + . gene_id "RvY_11994"; transcript_id "RvY_11994.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M1] Peptidase family M1"; Scaffold007 rebuild exon 358971 359627 . + . gene_id "RvY_11994"; transcript_id "RvY_11994.1"; Scaffold007 rebuild transcript 360230 361355 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.1"; gene_name "(1)PepN"; annotation "hypothetical protein."; Pfam "[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; CDD "(1)Aminopeptidase N [Amino acid transport and metabolism]"; EC "(1)EC3.4.11.-"; similar_genes "(1)AMPM_MANSE(e-value:3.0e-10;bit-score:63.0)"; Scaffold007 rebuild exon 360230 360556 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.1"; Scaffold007 rebuild exon 360667 360804 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.1"; Scaffold007 rebuild exon 360879 361355 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.1"; Scaffold007 rebuild transcript 361053 361669 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.2"; gene_name "(1)PepN"; annotation "hypothetical protein."; Pfam "[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; CDD "(1)Aminopeptidase N [Amino acid transport and metabolism]"; EC "(1)EC3.4.11.-"; similar_genes "(1)AMPM_MANSE(e-value:3.0e-10;bit-score:63.0)"; Scaffold007 rebuild exon 361053 361314 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.2"; Scaffold007 rebuild exon 361392 361669 . + . gene_id "RvY_11995"; transcript_id "RvY_11995.2"; Scaffold007 rebuild transcript 361789 362653 . + . gene_id "RvY_11996"; transcript_id "RvY_11996.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 361789 362084 . + . gene_id "RvY_11996"; transcript_id "RvY_11996.1"; Scaffold007 rebuild exon 362467 362653 . + . gene_id "RvY_11996"; transcript_id "RvY_11996.1"; Scaffold007 rebuild transcript 366673 366921 . - . gene_id "RvY_11997"; transcript_id "RvY_11997.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 366673 366921 . - . gene_id "RvY_11997"; transcript_id "RvY_11997.1"; Scaffold007 rebuild transcript 367242 367640 . - . gene_id "RvY_11998"; transcript_id "RvY_11998.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 367242 367640 . - . gene_id "RvY_11998"; transcript_id "RvY_11998.1"; Scaffold007 rebuild transcript 368077 368567 . + . gene_id "RvY_11999"; transcript_id "RvY_11999.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 368077 368462 . + . gene_id "RvY_11999"; transcript_id "RvY_11999.1"; Scaffold007 rebuild exon 368549 368567 . + . gene_id "RvY_11999"; transcript_id "RvY_11999.1"; Scaffold007 rebuild transcript 372665 374277 . + . gene_id "RvY_12000"; transcript_id "RvY_12000.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 372665 373156 . + . gene_id "RvY_12000"; transcript_id "RvY_12000.1"; Scaffold007 rebuild exon 373703 373990 . + . gene_id "RvY_12000"; transcript_id "RvY_12000.1"; Scaffold007 rebuild exon 374269 374277 . + . gene_id "RvY_12000"; transcript_id "RvY_12000.1"; Scaffold007 rebuild transcript 376280 376941 . - . gene_id "RvY_12001"; transcript_id "RvY_12001.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 376280 376413 . - . gene_id "RvY_12001"; transcript_id "RvY_12001.1"; Scaffold007 rebuild exon 376818 376941 . - . gene_id "RvY_12001"; transcript_id "RvY_12001.1"; Scaffold007 rebuild transcript 384873 385445 . - . gene_id "RvY_12002"; transcript_id "RvY_12002.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 384873 385151 . - . gene_id "RvY_12002"; transcript_id "RvY_12002.1"; Scaffold007 rebuild exon 385428 385445 . - . gene_id "RvY_12002"; transcript_id "RvY_12002.1"; Scaffold007 rebuild transcript 388351 389415 . + . gene_id "RvY_12003"; transcript_id "RvY_12003.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 388351 389415 . + . gene_id "RvY_12003"; transcript_id "RvY_12003.1"; Scaffold007 rebuild transcript 393137 393358 . + . gene_id "RvY_12004"; transcript_id "RvY_12004.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 393137 393358 . + . gene_id "RvY_12004"; transcript_id "RvY_12004.1"; Scaffold007 rebuild transcript 394208 394405 . + . gene_id "RvY_12005"; transcript_id "RvY_12005.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 394208 394405 . + . gene_id "RvY_12005"; transcript_id "RvY_12005.1"; Scaffold007 rebuild transcript 395941 396503 . - . gene_id "RvY_12006"; transcript_id "RvY_12006.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 395941 396056 . - . gene_id "RvY_12006"; transcript_id "RvY_12006.1"; Scaffold007 rebuild exon 396305 396503 . - . gene_id "RvY_12006"; transcript_id "RvY_12006.1"; Scaffold007 rebuild transcript 397755 402090 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; gene_name "APS"; annotation "SH2B adapter protein 2"; Pfam "[SH2]"; CDD "Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae."; KO "K07193"; similar_genes "SH2B2_MOUSE(e-value:1.7e-19;bit-score:94.0)"; Scaffold007 rebuild exon 397755 398045 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild exon 398329 398528 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild exon 398600 398847 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild exon 398976 399103 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild exon 399422 399523 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild exon 400914 401239 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild exon 401295 402090 . - . gene_id "RvY_12007"; transcript_id "RvY_12007.1"; Scaffold007 rebuild transcript 405982 416635 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; gene_name "CUTL"; annotation "homeobox protein cut-like"; Pfam "(2)[CASP_C] CASP C terminal|(1)[CUT]"; KO "K09313"; similar_genes "(1)CUX1_HUMAN(e-value:5.4e-14;bit-score:76.0)(2)CASP_HUMAN(e-value:8.8e-08;bit-score:55.0)"; Scaffold007 rebuild exon 405982 406388 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 406657 406806 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 406880 407188 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 407350 407633 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 407889 408324 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 408640 409374 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 409675 409802 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 409887 409993 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 410060 410137 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 410334 410477 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 410811 411106 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 411177 411293 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 412193 412319 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 412995 413105 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild exon 416576 416635 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.1"; Scaffold007 rebuild transcript 403677 416635 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; gene_name "CUTL"; annotation "homeobox protein cut-like"; Pfam "(2)[CASP_C] CASP C terminal|(1)[CUT]"; KO "K09313"; similar_genes "(1)CUX1_HUMAN(e-value:5.4e-14;bit-score:76.0)(2)CASP_HUMAN(e-value:8.8e-08;bit-score:55.0)"; Scaffold007 rebuild exon 403677 403716 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 403792 403937 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 404135 404335 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 404403 404702 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 405029 405174 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 409675 409802 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 409887 409993 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 410060 410137 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 410334 410477 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 410811 411106 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 411177 411293 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 412193 412319 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 412995 413105 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild exon 416576 416635 . - . gene_id "RvY_12008"; transcript_id "RvY_12008.2"; Scaffold007 rebuild transcript 417297 418124 . - . gene_id "RvY_12009"; transcript_id "RvY_12009.1"; gene_name "(1)HIP2"; annotation "(1)putative Ubiquitin-conjugating enzyme E2 K(2)hypothetical protein."; Pfam "[UBA] UBA/TS-N domain|[UQ_con] Ubiquitin-conjugating enzyme"; CDD "(1)Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this Scaffold007 rebuild exon 417297 417539 . - . gene_id "RvY_12009"; transcript_id "RvY_12009.1"; Scaffold007 rebuild exon 417759 418124 . - . gene_id "RvY_12009"; transcript_id "RvY_12009.1"; Scaffold007 rebuild transcript 416938 417339 . - . gene_id "RvY_12009"; transcript_id "RvY_12009.2"; gene_name "(1)HIP2"; annotation "(1)putative Ubiquitin-conjugating enzyme E2 K(2)hypothetical protein."; Pfam "[UBA] UBA/TS-N domain|[UQ_con] Ubiquitin-conjugating enzyme"; CDD "(1)Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this Scaffold007 rebuild exon 416938 417339 . - . gene_id "RvY_12009"; transcript_id "RvY_12009.2"; Scaffold007 rebuild transcript 418569 419859 . + . gene_id "RvY_12010"; transcript_id "RvY_12010.1"; annotation "hypothetical protein."; Pfam "[MAM33] Mitochondrial glycoprotein"; KO "K15414"; Scaffold007 rebuild exon 418569 418800 . + . gene_id "RvY_12010"; transcript_id "RvY_12010.1"; Scaffold007 rebuild exon 418879 419132 . + . gene_id "RvY_12010"; transcript_id "RvY_12010.1"; Scaffold007 rebuild exon 419336 419465 . + . gene_id "RvY_12010"; transcript_id "RvY_12010.1"; Scaffold007 rebuild exon 419546 419637 . + . gene_id "RvY_12010"; transcript_id "RvY_12010.1"; Scaffold007 rebuild exon 419710 419859 . + . gene_id "RvY_12010"; transcript_id "RvY_12010.1"; Scaffold007 rebuild transcript 420247 421996 . + . gene_id "RvY_12011"; transcript_id "RvY_12011.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 420247 420410 . + . gene_id "RvY_12011"; transcript_id "RvY_12011.1"; Scaffold007 rebuild exon 420655 421450 . + . gene_id "RvY_12011"; transcript_id "RvY_12011.1"; Scaffold007 rebuild exon 421640 421996 . + . gene_id "RvY_12011"; transcript_id "RvY_12011.1"; Scaffold007 rebuild transcript 422103 422627 . - . gene_id "RvY_12012"; transcript_id "RvY_12012.1"; gene_name "K01101"; annotation "4-nitrophenyl phosphatase [EC:3.1.3.41]"; Pfam "[Hydrolase_like] HAD-hyrolase-like"; CDD "phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this HMM have been annotated as pNPPases due to this association."; EC "EC3.1.3.41"; KO "K01101"; Scaffold007 rebuild exon 422103 422627 . - . gene_id "RvY_12012"; transcript_id "RvY_12012.1"; Scaffold007 rebuild transcript 423027 423437 . - . gene_id "RvY_12013"; transcript_id "RvY_12013.1"; gene_name "K01101"; annotation "4-nitrophenyl phosphatase [EC:3.1.3.41]"; Pfam "[Hydrolase_6] Haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]"; EC "EC3.1.3.18|EC3.1.3.41"; KO "K01101"; similar_genes "PGP_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold007 rebuild exon 423027 423140 . - . gene_id "RvY_12013"; transcript_id "RvY_12013.1"; Scaffold007 rebuild exon 423210 423277 . - . gene_id "RvY_12013"; transcript_id "RvY_12013.1"; Scaffold007 rebuild exon 423362 423437 . - . gene_id "RvY_12013"; transcript_id "RvY_12013.1"; Scaffold007 rebuild transcript 424605 424820 . + . gene_id "RvY_12014"; transcript_id "RvY_12014.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 424605 424820 . + . gene_id "RvY_12014"; transcript_id "RvY_12014.1"; Scaffold007 rebuild transcript 426920 428384 . + . gene_id "RvY_12015"; transcript_id "RvY_12015.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 426920 427520 . + . gene_id "RvY_12015"; transcript_id "RvY_12015.1"; Scaffold007 rebuild exon 427582 428384 . + . gene_id "RvY_12015"; transcript_id "RvY_12015.1"; Scaffold007 rebuild transcript 428881 429198 . - . gene_id "RvY_12016"; transcript_id "RvY_12016.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 428881 429198 . - . gene_id "RvY_12016"; transcript_id "RvY_12016.1"; Scaffold007 rebuild transcript 430919 432922 . - . gene_id "RvY_12017"; transcript_id "RvY_12017.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 430919 431589 . - . gene_id "RvY_12017"; transcript_id "RvY_12017.1"; Scaffold007 rebuild exon 432532 432922 . - . gene_id "RvY_12017"; transcript_id "RvY_12017.1"; Scaffold007 rebuild transcript 433729 436417 . - . gene_id "RvY_12018"; transcript_id "RvY_12018.1"; gene_name "bglX"; annotation "beta-glucosidase [EC:3.2.1.21]"; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain|[Fn3-like] Fibronectin type III-like domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; KO "K05349"; similar_genes "BGLX_ECOLI(e-value:7.3e-18;bit-score:88.0)"; Scaffold007 rebuild exon 433729 433801 . - . gene_id "RvY_12018"; transcript_id "RvY_12018.1"; Scaffold007 rebuild exon 433878 435787 . - . gene_id "RvY_12018"; transcript_id "RvY_12018.1"; Scaffold007 rebuild exon 435845 436417 . - . gene_id "RvY_12018"; transcript_id "RvY_12018.1"; Scaffold007 rebuild transcript 436901 438765 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; annotation "hypothetical protein."; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold|[EHN] Epoxide hydrolase N terminus"; EC "EC3.3.2.9"; similar_genes "HYEP_RAT(e-value:1.4e-16;bit-score:84.0)"; Scaffold007 rebuild exon 436901 437114 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; Scaffold007 rebuild exon 437201 437441 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; Scaffold007 rebuild exon 437543 437748 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; Scaffold007 rebuild exon 437833 437965 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; Scaffold007 rebuild exon 438066 438378 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; Scaffold007 rebuild exon 438442 438765 . - . gene_id "RvY_12019"; transcript_id "RvY_12019.1"; Scaffold007 rebuild transcript 442495 443178 . - . gene_id "RvY_12020"; transcript_id "RvY_12020.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold007 rebuild exon 442495 443178 . - . gene_id "RvY_12020"; transcript_id "RvY_12020.1"; Scaffold007 rebuild transcript 443534 446301 . - . gene_id "RvY_12021"; transcript_id "RvY_12021.1"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold007 rebuild exon 443534 443943 . - . gene_id "RvY_12021"; transcript_id "RvY_12021.1"; Scaffold007 rebuild exon 444005 444633 . - . gene_id "RvY_12021"; transcript_id "RvY_12021.1"; Scaffold007 rebuild exon 444721 445414 . - . gene_id "RvY_12021"; transcript_id "RvY_12021.1"; Scaffold007 rebuild exon 445509 446301 . - . gene_id "RvY_12021"; transcript_id "RvY_12021.1"; Scaffold007 rebuild transcript 447743 448548 . - . gene_id "RvY_12022"; transcript_id "RvY_12022.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 447743 448029 . - . gene_id "RvY_12022"; transcript_id "RvY_12022.1"; Scaffold007 rebuild exon 448187 448363 . - . gene_id "RvY_12022"; transcript_id "RvY_12022.1"; Scaffold007 rebuild exon 448425 448548 . - . gene_id "RvY_12022"; transcript_id "RvY_12022.1"; Scaffold007 rebuild transcript 450351 450716 . + . gene_id "RvY_12023"; transcript_id "RvY_12023.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 450351 450716 . + . gene_id "RvY_12023"; transcript_id "RvY_12023.1"; Scaffold007 rebuild transcript 451983 452777 . - . gene_id "RvY_12024"; transcript_id "RvY_12024.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 451983 452281 . - . gene_id "RvY_12024"; transcript_id "RvY_12024.1"; Scaffold007 rebuild exon 452417 452593 . - . gene_id "RvY_12024"; transcript_id "RvY_12024.1"; Scaffold007 rebuild exon 452654 452777 . - . gene_id "RvY_12024"; transcript_id "RvY_12024.1"; Scaffold007 rebuild transcript 456741 458605 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07418"; similar_genes "CP2U1_RAT(e-value:3.0e-08;bit-score:56.0)"; Scaffold007 rebuild exon 456741 456922 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; Scaffold007 rebuild exon 456986 457249 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; Scaffold007 rebuild exon 457314 457490 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; Scaffold007 rebuild exon 457555 458085 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; Scaffold007 rebuild exon 458191 458424 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; Scaffold007 rebuild exon 458491 458605 . - . gene_id "RvY_12025"; transcript_id "RvY_12025.1"; Scaffold007 rebuild transcript 460137 461711 . + . gene_id "RvY_12026"; transcript_id "RvY_12026.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 460137 460269 . + . gene_id "RvY_12026"; transcript_id "RvY_12026.1"; Scaffold007 rebuild exon 461554 461711 . + . gene_id "RvY_12026"; transcript_id "RvY_12026.1"; Scaffold007 rebuild transcript 463221 463547 . + . gene_id "RvY_12027"; transcript_id "RvY_12027.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 463221 463547 . + . gene_id "RvY_12027"; transcript_id "RvY_12027.1"; Scaffold007 rebuild transcript 464211 465098 . - . gene_id "RvY_12028"; transcript_id "RvY_12028.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 464211 464227 . - . gene_id "RvY_12028"; transcript_id "RvY_12028.1"; Scaffold007 rebuild exon 464551 464959 . - . gene_id "RvY_12028"; transcript_id "RvY_12028.1"; Scaffold007 rebuild exon 465012 465098 . - . gene_id "RvY_12028"; transcript_id "RvY_12028.1"; Scaffold007 rebuild transcript 465556 465759 . + . gene_id "RvY_12029"; transcript_id "RvY_12029.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 465556 465759 . + . gene_id "RvY_12029"; transcript_id "RvY_12029.1"; Scaffold007 rebuild transcript 466360 466677 . + . gene_id "RvY_12030"; transcript_id "RvY_12030.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 466360 466677 . + . gene_id "RvY_12030"; transcript_id "RvY_12030.1"; Scaffold007 rebuild transcript 467775 468275 . + . gene_id "RvY_12031"; transcript_id "RvY_12031.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 467775 467951 . + . gene_id "RvY_12031"; transcript_id "RvY_12031.1"; Scaffold007 rebuild exon 468210 468275 . + . gene_id "RvY_12031"; transcript_id "RvY_12031.1"; Scaffold007 rebuild transcript 468494 468667 . - . gene_id "RvY_12032"; transcript_id "RvY_12032.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 468494 468667 . - . gene_id "RvY_12032"; transcript_id "RvY_12032.1"; Scaffold007 rebuild transcript 469384 474056 . - . gene_id "RvY_12033"; transcript_id "RvY_12033.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 469384 469499 . - . gene_id "RvY_12033"; transcript_id "RvY_12033.1"; Scaffold007 rebuild exon 471826 472077 . - . gene_id "RvY_12033"; transcript_id "RvY_12033.1"; Scaffold007 rebuild exon 472123 472335 . - . gene_id "RvY_12033"; transcript_id "RvY_12033.1"; Scaffold007 rebuild exon 472421 473786 . - . gene_id "RvY_12033"; transcript_id "RvY_12033.1"; Scaffold007 rebuild exon 473982 474056 . - . gene_id "RvY_12033"; transcript_id "RvY_12033.1"; Scaffold007 rebuild transcript 469618 471265 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 469618 469717 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 469829 469891 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 469948 469978 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 470052 470129 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 470275 470320 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 470399 470478 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 470553 470878 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild exon 470988 471265 . + . gene_id "RvY_12034"; transcript_id "RvY_12034.1"; Scaffold007 rebuild transcript 474863 475087 . + . gene_id "RvY_12035"; transcript_id "RvY_12035.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 474863 475087 . + . gene_id "RvY_12035"; transcript_id "RvY_12035.1"; Scaffold007 rebuild transcript 477655 479035 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 477655 477655 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.1"; Scaffold007 rebuild exon 477761 478249 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.1"; Scaffold007 rebuild exon 478523 478683 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.1"; Scaffold007 rebuild exon 478901 479035 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.1"; Scaffold007 rebuild transcript 477655 478260 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 477655 477655 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.2"; Scaffold007 rebuild exon 477761 478260 . + . gene_id "RvY_12036"; transcript_id "RvY_12036.2"; Scaffold007 rebuild transcript 478877 479368 . - . gene_id "RvY_12037"; transcript_id "RvY_12037.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 478877 478986 . - . gene_id "RvY_12037"; transcript_id "RvY_12037.1"; Scaffold007 rebuild exon 479320 479368 . - . gene_id "RvY_12037"; transcript_id "RvY_12037.1"; Scaffold007 rebuild transcript 481089 481794 . - . gene_id "RvY_12038"; transcript_id "RvY_12038.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 481089 481439 . - . gene_id "RvY_12038"; transcript_id "RvY_12038.1"; Scaffold007 rebuild exon 481459 481679 . - . gene_id "RvY_12038"; transcript_id "RvY_12038.1"; Scaffold007 rebuild exon 481761 481794 . - . gene_id "RvY_12038"; transcript_id "RvY_12038.1"; Scaffold007 rebuild transcript 481809 483201 . + . gene_id "RvY_12039"; transcript_id "RvY_12039.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 481809 481959 . + . gene_id "RvY_12039"; transcript_id "RvY_12039.1"; Scaffold007 rebuild exon 483041 483201 . + . gene_id "RvY_12039"; transcript_id "RvY_12039.1"; Scaffold007 rebuild transcript 483939 485662 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 483939 484235 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.1"; Scaffold007 rebuild exon 484769 485662 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.1"; Scaffold007 rebuild transcript 484703 485662 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 484703 485662 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.2"; Scaffold007 rebuild transcript 483939 485662 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 483939 484235 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.3"; Scaffold007 rebuild exon 484769 485130 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.3"; Scaffold007 rebuild exon 485491 485662 . - . gene_id "RvY_12040"; transcript_id "RvY_12040.3"; Scaffold007 rebuild transcript 487553 487717 . + . gene_id "RvY_12041"; transcript_id "RvY_12041.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold007 rebuild exon 487553 487717 . + . gene_id "RvY_12041"; transcript_id "RvY_12041.1"; Scaffold007 rebuild transcript 488299 489828 . + . gene_id "RvY_12042"; transcript_id "RvY_12042.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 488299 488631 . + . gene_id "RvY_12042"; transcript_id "RvY_12042.1"; Scaffold007 rebuild exon 488860 489316 . + . gene_id "RvY_12042"; transcript_id "RvY_12042.1"; Scaffold007 rebuild exon 489548 489828 . + . gene_id "RvY_12042"; transcript_id "RvY_12042.1"; Scaffold007 rebuild transcript 493067 494188 . - . gene_id "RvY_12043"; transcript_id "RvY_12043.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold007 rebuild exon 493067 493294 . - . gene_id "RvY_12043"; transcript_id "RvY_12043.1"; Scaffold007 rebuild exon 493377 493619 . - . gene_id "RvY_12043"; transcript_id "RvY_12043.1"; Scaffold007 rebuild exon 493724 493962 . - . gene_id "RvY_12043"; transcript_id "RvY_12043.1"; Scaffold007 rebuild exon 494107 494188 . - . gene_id "RvY_12043"; transcript_id "RvY_12043.1"; Scaffold007 rebuild transcript 495434 496233 . + . gene_id "RvY_12044"; transcript_id "RvY_12044.1"; annotation "hypothetical protein."; Pfam "[SR-25] Nuclear RNA-splicing-associated protein"; Scaffold007 rebuild exon 495434 495525 . + . gene_id "RvY_12044"; transcript_id "RvY_12044.1"; Scaffold007 rebuild exon 495587 495892 . + . gene_id "RvY_12044"; transcript_id "RvY_12044.1"; Scaffold007 rebuild exon 496025 496094 . + . gene_id "RvY_12044"; transcript_id "RvY_12044.1"; Scaffold007 rebuild exon 496171 496233 . + . gene_id "RvY_12044"; transcript_id "RvY_12044.1"; Scaffold007 rebuild transcript 496666 497745 . - . gene_id "RvY_12045"; transcript_id "RvY_12045.1"; gene_name "BAG1"; annotation "BCL2-associated athanogene 1"; Pfam "[ubiquitin] Ubiquitin family|[BAG]"; KO "K09555"; Scaffold007 rebuild exon 496666 497013 . - . gene_id "RvY_12045"; transcript_id "RvY_12045.1"; Scaffold007 rebuild exon 497290 497745 . - . gene_id "RvY_12045"; transcript_id "RvY_12045.1"; Scaffold007 rebuild transcript 498413 502407 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; annotation "hypothetical protein."; Pfam "[DUF3358]|[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; EC "EC3.4.11.-"; similar_genes "ERAP1_MOUSE(e-value:8.6e-23;bit-score:105.0)"; Scaffold007 rebuild exon 498413 498562 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 498641 498698 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 498782 498925 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 499014 499217 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 499339 499716 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 499779 500022 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 500089 500527 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 500625 500762 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 500832 501106 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 501174 501309 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 501381 501663 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild exon 501755 502407 . - . gene_id "RvY_12046"; transcript_id "RvY_12046.1"; Scaffold007 rebuild transcript 504305 508739 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; gene_name "TCERG1"; annotation "putative Transcription elongation regulator 1"; Pfam "[WW]|[FF]"; CDD "Splicing factor [RNA processing and modification]"; KO "K12824"; similar_genes "TCRG1_HUMAN(e-value:2.0e-28;bit-score:123.0)"; Scaffold007 rebuild exon 504305 504442 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 504710 504871 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 504942 505025 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 505105 505281 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 505608 505868 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 506144 506332 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 506419 506569 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 506633 506841 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 506905 507151 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 507359 507622 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 507726 507840 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 507913 508021 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 508084 508169 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 508234 508591 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild exon 508647 508739 . - . gene_id "RvY_12047"; transcript_id "RvY_12047.1"; Scaffold007 rebuild transcript 510023 511968 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; gene_name "ATPeVC"; annotation "V-type proton ATPase subunit C 1-A"; Pfam "[V-ATPase_C] V-ATPase subunit C"; EC "EC3.6.3.14"; KO "K02148"; similar_genes "VTC1A_DANRE(e-value:8.2e-121;bit-score:430.0)"; Scaffold007 rebuild exon 510023 510139 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 510200 510335 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 510411 510508 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 510579 510672 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 510744 510836 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 510900 510968 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 511032 511130 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 511209 511300 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 511366 511460 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 511545 511630 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 511716 511783 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild exon 511840 511968 . - . gene_id "RvY_12048"; transcript_id "RvY_12048.1"; Scaffold007 rebuild transcript 512696 513688 . - . gene_id "RvY_12049"; transcript_id "RvY_12049.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 512696 513177 . - . gene_id "RvY_12049"; transcript_id "RvY_12049.1"; Scaffold007 rebuild exon 513568 513688 . - . gene_id "RvY_12049"; transcript_id "RvY_12049.1"; Scaffold007 rebuild transcript 514042 518124 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; annotation "hypothetical protein."; Pfam "[PPR_1] PPR repeat|[PPR] PPR repeat|[PPR_3] Pentatricopeptide repeat domain|[PPR_2] PPR repeat family"; similar_genes "PTCD1_PONAB(e-value:4.9e-19;bit-score:92.0)"; Scaffold007 rebuild exon 514042 514617 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 514860 515000 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 515074 515245 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 515320 515468 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 515584 515937 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 516228 516513 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 516690 516892 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 516955 517071 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 517633 517824 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild exon 517906 518124 . + . gene_id "RvY_12050"; transcript_id "RvY_12050.1"; Scaffold007 rebuild transcript 518170 518343 . - . gene_id "RvY_12051"; transcript_id "RvY_12051.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 518170 518343 . - . gene_id "RvY_12051"; transcript_id "RvY_12051.1"; Scaffold007 rebuild transcript 519544 519861 . - . gene_id "RvY_12052"; transcript_id "RvY_12052.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 519544 519861 . - . gene_id "RvY_12052"; transcript_id "RvY_12052.1"; Scaffold007 rebuild transcript 521536 521802 . - . gene_id "RvY_12053"; transcript_id "RvY_12053.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 521536 521802 . - . gene_id "RvY_12053"; transcript_id "RvY_12053.1"; Scaffold007 rebuild transcript 523082 523474 . + . gene_id "RvY_12054"; transcript_id "RvY_12054.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 523082 523474 . + . gene_id "RvY_12054"; transcript_id "RvY_12054.1"; Scaffold007 rebuild transcript 523121 523471 . + . gene_id "RvY_12054"; transcript_id "RvY_12054.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 523121 523471 . + . gene_id "RvY_12054"; transcript_id "RvY_12054.2"; Scaffold007 rebuild transcript 524117 524338 . + . gene_id "RvY_12055"; transcript_id "RvY_12055.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 524117 524338 . + . gene_id "RvY_12055"; transcript_id "RvY_12055.1"; Scaffold007 rebuild transcript 526795 527022 . + . gene_id "RvY_12056"; transcript_id "RvY_12056.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 526795 527022 . + . gene_id "RvY_12056"; transcript_id "RvY_12056.1"; Scaffold007 rebuild transcript 531362 533250 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; gene_name "(1,4)oat"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1,4)sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange."; Scaffold007 rebuild exon 531362 531458 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 531542 531580 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 531677 531712 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 531804 531835 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 531904 531958 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 532053 532080 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 532149 532221 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 532283 532427 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 532492 532656 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild exon 532721 533250 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.1"; Scaffold007 rebuild transcript 527827 532084 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; gene_name "(1,4)oat"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1,4)sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange."; Scaffold007 rebuild exon 527827 528037 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 530738 530874 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 531176 531458 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 531542 531580 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 531677 531712 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 531804 531835 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 531904 531958 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild exon 532053 532084 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.2"; Scaffold007 rebuild transcript 527827 532074 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; gene_name "(1,4)oat"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1,4)sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange."; Scaffold007 rebuild exon 527827 528037 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 530738 530874 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 531176 531458 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 531542 531580 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 531677 531712 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 531804 531835 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 531904 531962 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild exon 532053 532074 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.3"; Scaffold007 rebuild transcript 532355 533250 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.4"; gene_name "(1,4)oat"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "(1,4)sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange."; Scaffold007 rebuild exon 532355 532427 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.4"; Scaffold007 rebuild exon 532492 532656 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.4"; Scaffold007 rebuild exon 532721 533250 . + . gene_id "RvY_12057"; transcript_id "RvY_12057.4"; Scaffold007 rebuild transcript 533363 533981 . + . gene_id "RvY_12058"; transcript_id "RvY_12058.1"; gene_name "oat"; annotation "hypothetical protein."; Pfam "[OATP] Organic Anion Transporter Polypeptide (OATP) family"; CDD "sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange."; Scaffold007 rebuild exon 533363 533391 . + . gene_id "RvY_12058"; transcript_id "RvY_12058.1"; Scaffold007 rebuild exon 533459 533550 . + . gene_id "RvY_12058"; transcript_id "RvY_12058.1"; Scaffold007 rebuild exon 533647 533798 . + . gene_id "RvY_12058"; transcript_id "RvY_12058.1"; Scaffold007 rebuild exon 533859 533981 . + . gene_id "RvY_12058"; transcript_id "RvY_12058.1"; Scaffold007 rebuild transcript 534547 535345 . - . gene_id "RvY_12059"; transcript_id "RvY_12059.1"; annotation "hypothetical protein."; Pfam "[LRR_4] Leucine Rich repeats (2 copies)"; similar_genes "LRC67_XENLA(e-value:1.2e-07;bit-score:55.0)"; Scaffold007 rebuild exon 534547 535055 . - . gene_id "RvY_12059"; transcript_id "RvY_12059.1"; Scaffold007 rebuild exon 535126 535345 . - . gene_id "RvY_12059"; transcript_id "RvY_12059.1"; Scaffold007 rebuild transcript 537488 537664 . - . gene_id "RvY_12060"; transcript_id "RvY_12060.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; Scaffold007 rebuild exon 537488 537664 . - . gene_id "RvY_12060"; transcript_id "RvY_12060.1"; Scaffold007 rebuild transcript 539074 541699 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; annotation "hypothetical protein."; Pfam "[Zona_pellucida] Zona pellucida-like domain"; Scaffold007 rebuild exon 539074 539130 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 539512 539560 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 539754 539947 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 540015 540124 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 540191 540376 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 540469 540622 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 540898 541045 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 541153 541260 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild exon 541323 541699 . + . gene_id "RvY_12061"; transcript_id "RvY_12061.1"; Scaffold007 rebuild transcript 542379 542624 . - . gene_id "RvY_12062"; transcript_id "RvY_12062.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 542379 542624 . - . gene_id "RvY_12062"; transcript_id "RvY_12062.1"; Scaffold007 rebuild transcript 544519 545293 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.1"; gene_name "(1)PBP1_NPR_A"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANP>BNP>>CNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure."; Scaffold007 rebuild exon 544519 544578 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.1"; Scaffold007 rebuild exon 544641 544808 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.1"; Scaffold007 rebuild exon 545061 545111 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.1"; Scaffold007 rebuild exon 545174 545293 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.1"; Scaffold007 rebuild transcript 545075 545293 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.2"; gene_name "(1)PBP1_NPR_A"; annotation "hypothetical protein."; CDD "(1)Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANP>BNP>>CNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure."; Scaffold007 rebuild exon 545075 545293 . - . gene_id "RvY_12063"; transcript_id "RvY_12063.2"; Scaffold007 rebuild transcript 547538 550303 . + . gene_id "RvY_12064"; transcript_id "RvY_12064.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 547538 550303 . + . gene_id "RvY_12064"; transcript_id "RvY_12064.1"; Scaffold007 rebuild transcript 547646 550306 . + . gene_id "RvY_12064"; transcript_id "RvY_12064.2"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 547646 550306 . + . gene_id "RvY_12064"; transcript_id "RvY_12064.2"; Scaffold007 rebuild transcript 554530 555162 . - . gene_id "RvY_12065"; transcript_id "RvY_12065.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 554530 554739 . - . gene_id "RvY_12065"; transcript_id "RvY_12065.1"; Scaffold007 rebuild exon 555058 555162 . - . gene_id "RvY_12065"; transcript_id "RvY_12065.1"; Scaffold007 rebuild transcript 556675 556893 . + . gene_id "RvY_12066"; transcript_id "RvY_12066.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 556675 556893 . + . gene_id "RvY_12066"; transcript_id "RvY_12066.1"; Scaffold007 rebuild transcript 560430 561504 . - . gene_id "RvY_12067"; transcript_id "RvY_12067.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 560430 560555 . - . gene_id "RvY_12067"; transcript_id "RvY_12067.1"; Scaffold007 rebuild exon 560677 560912 . - . gene_id "RvY_12067"; transcript_id "RvY_12067.1"; Scaffold007 rebuild exon 561294 561504 . - . gene_id "RvY_12067"; transcript_id "RvY_12067.1"; Scaffold007 rebuild transcript 565412 566687 . + . gene_id "RvY_12068"; transcript_id "RvY_12068.1"; gene_name "ATPeF0B"; annotation "F-type H+-transporting ATPase subunit b [EC:3.6.3.14]"; Pfam "[Mt_ATP-synt_B] Mitochondrial ATP synthase B chain precursor (ATP-synt_B)"; EC "EC3.6.3.14"; KO "K02127"; similar_genes "AT5F1_DROME(e-value:7.9e-11;bit-score:65.0)"; Scaffold007 rebuild exon 565412 565746 . + . gene_id "RvY_12068"; transcript_id "RvY_12068.1"; Scaffold007 rebuild exon 566126 566687 . + . gene_id "RvY_12068"; transcript_id "RvY_12068.1"; Scaffold007 rebuild transcript 567048 571618 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; gene_name "K06972"; annotation "Presequence protease, mitochondrial"; Pfam "[Peptidase_M16_C] Peptidase M16 inactive domain|[M16C_assoc] Peptidase M16C associated|[Peptidase_M16] Insulinase (Peptidase family M16)"; CDD "Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]"; EC "EC3.4.24.-"; KO "K06972"; similar_genes "PREP_MOUSE(e-value:1.1e-67;bit-score:254.0)"; Scaffold007 rebuild exon 567048 567652 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild exon 568117 568507 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild exon 568567 568821 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild exon 569033 569268 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild exon 569500 569830 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild exon 570020 570437 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild exon 570729 571618 . + . gene_id "RvY_12069"; transcript_id "RvY_12069.1"; Scaffold007 rebuild transcript 572088 574180 . + . gene_id "RvY_12070"; transcript_id "RvY_12070.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold007 rebuild exon 572088 572307 . + . gene_id "RvY_12070"; transcript_id "RvY_12070.1"; Scaffold007 rebuild exon 572383 572997 . + . gene_id "RvY_12070"; transcript_id "RvY_12070.1"; Scaffold007 rebuild exon 573068 573204 . + . gene_id "RvY_12070"; transcript_id "RvY_12070.1"; Scaffold007 rebuild exon 573327 573737 . + . gene_id "RvY_12070"; transcript_id "RvY_12070.1"; Scaffold007 rebuild exon 573800 574180 . + . gene_id "RvY_12070"; transcript_id "RvY_12070.1"; Scaffold007 rebuild transcript 576812 579168 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold007 rebuild exon 576812 577022 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.1"; Scaffold007 rebuild exon 577100 577732 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.1"; Scaffold007 rebuild exon 577818 577960 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.1"; Scaffold007 rebuild exon 578319 578729 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.1"; Scaffold007 rebuild exon 578803 579168 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.1"; Scaffold007 rebuild transcript 576745 579168 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold007 rebuild exon 576745 576765 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; Scaffold007 rebuild exon 576878 577022 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; Scaffold007 rebuild exon 577100 577732 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; Scaffold007 rebuild exon 577818 577960 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; Scaffold007 rebuild exon 578319 578729 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; Scaffold007 rebuild exon 578803 579168 . + . gene_id "RvY_12071"; transcript_id "RvY_12071.2"; Scaffold007 rebuild transcript 579416 580336 . - . gene_id "RvY_12072"; transcript_id "RvY_12072.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 579416 580336 . - . gene_id "RvY_12072"; transcript_id "RvY_12072.1"; Scaffold007 rebuild transcript 583079 584791 . - . gene_id "RvY_12073"; transcript_id "RvY_12073.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 583079 584791 . - . gene_id "RvY_12073"; transcript_id "RvY_12073.1"; Scaffold007 rebuild transcript 585352 585909 . + . gene_id "RvY_12074"; transcript_id "RvY_12074.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 585352 585909 . + . gene_id "RvY_12074"; transcript_id "RvY_12074.1"; Scaffold007 rebuild transcript 586713 587024 . + . gene_id "RvY_12075"; transcript_id "RvY_12075.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 586713 587024 . + . gene_id "RvY_12075"; transcript_id "RvY_12075.1"; Scaffold007 rebuild transcript 587688 588779 . + . gene_id "RvY_12076"; transcript_id "RvY_12076.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 587688 588012 . + . gene_id "RvY_12076"; transcript_id "RvY_12076.1"; Scaffold007 rebuild exon 588115 588779 . + . gene_id "RvY_12076"; transcript_id "RvY_12076.1"; Scaffold007 rebuild transcript 589192 590381 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 589192 589510 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.1"; Scaffold007 rebuild exon 589711 590381 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.1"; Scaffold007 rebuild transcript 589192 590381 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 589192 589510 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.2"; Scaffold007 rebuild exon 589777 590381 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.2"; Scaffold007 rebuild transcript 589761 590381 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 589761 590381 . + . gene_id "RvY_12077"; transcript_id "RvY_12077.3"; Scaffold007 rebuild transcript 591894 592268 . - . gene_id "RvY_12078"; transcript_id "RvY_12078.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 591894 592268 . - . gene_id "RvY_12078"; transcript_id "RvY_12078.1"; Scaffold007 rebuild transcript 595216 598439 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|(1)[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; similar_genes "GR101_LYMST(e-value:1.1e-20;bit-score:98.0)"; Scaffold007 rebuild exon 595216 595441 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.1"; Scaffold007 rebuild exon 595599 596677 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.1"; Scaffold007 rebuild exon 597052 597698 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.1"; Scaffold007 rebuild exon 597905 598439 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.1"; Scaffold007 rebuild transcript 596354 598808 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.2"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|(1)[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; similar_genes "GR101_LYMST(e-value:1.1e-20;bit-score:98.0)"; Scaffold007 rebuild exon 596354 596677 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.2"; Scaffold007 rebuild exon 597052 597698 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.2"; Scaffold007 rebuild exon 597905 598397 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.2"; Scaffold007 rebuild exon 598461 598673 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.2"; Scaffold007 rebuild exon 598755 598808 . + . gene_id "RvY_12079"; transcript_id "RvY_12079.2"; Scaffold007 rebuild transcript 598990 603443 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; gene_name "CUB"; annotation "hypothetical protein."; Pfam "[CUB]"; CDD "CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; similar_genes "NETO2_HUMAN(e-value:1.5e-07;bit-score:54.0)"; Scaffold007 rebuild exon 598990 599437 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild exon 600696 601017 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild exon 601079 601310 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild exon 601441 601577 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild exon 602237 602566 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild exon 603023 603160 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild exon 603308 603443 . - . gene_id "RvY_12080"; transcript_id "RvY_12080.1"; Scaffold007 rebuild transcript 605062 606487 . - . gene_id "RvY_12081"; transcript_id "RvY_12081.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 605062 605465 . - . gene_id "RvY_12081"; transcript_id "RvY_12081.1"; Scaffold007 rebuild exon 605528 605731 . - . gene_id "RvY_12081"; transcript_id "RvY_12081.1"; Scaffold007 rebuild exon 605792 606081 . - . gene_id "RvY_12081"; transcript_id "RvY_12081.1"; Scaffold007 rebuild exon 606154 606337 . - . gene_id "RvY_12081"; transcript_id "RvY_12081.1"; Scaffold007 rebuild exon 606400 606487 . - . gene_id "RvY_12081"; transcript_id "RvY_12081.1"; Scaffold007 rebuild transcript 608000 611969 . + . gene_id "RvY_12082"; transcript_id "RvY_12082.1"; gene_name "BglX"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; similar_genes "BGLX_SALTY(e-value:3.8e-23;bit-score:106.0)"; Scaffold007 rebuild exon 608000 608809 . + . gene_id "RvY_12082"; transcript_id "RvY_12082.1"; Scaffold007 rebuild exon 610479 611969 . + . gene_id "RvY_12082"; transcript_id "RvY_12082.1"; Scaffold007 rebuild transcript 612068 612619 . + . gene_id "RvY_12083"; transcript_id "RvY_12083.1"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain"; EC "EC3.2.1.21"; similar_genes "BGLX_ECOLI(e-value:1.2e-17;bit-score:88.0)"; Scaffold007 rebuild exon 612068 612619 . + . gene_id "RvY_12083"; transcript_id "RvY_12083.1"; Scaffold007 rebuild transcript 614132 616885 . + . gene_id "RvY_12084"; transcript_id "RvY_12084.1"; gene_name "bglX"; annotation "beta-glucosidase [EC:3.2.1.21]"; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain|[Fn3-like] Fibronectin type III-like domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; KO "K05349"; similar_genes "BGLX_SALTY(e-value:6.7e-25;bit-score:112.0)"; Scaffold007 rebuild exon 614132 614713 . + . gene_id "RvY_12084"; transcript_id "RvY_12084.1"; Scaffold007 rebuild exon 614875 616613 . + . gene_id "RvY_12084"; transcript_id "RvY_12084.1"; Scaffold007 rebuild exon 616804 616885 . + . gene_id "RvY_12084"; transcript_id "RvY_12084.1"; Scaffold007 rebuild transcript 617392 618132 . + . gene_id "RvY_12085"; transcript_id "RvY_12085.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 617392 618132 . + . gene_id "RvY_12085"; transcript_id "RvY_12085.1"; Scaffold007 rebuild transcript 619000 619194 . + . gene_id "RvY_12086"; transcript_id "RvY_12086.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold007 rebuild exon 619000 619194 . + . gene_id "RvY_12086"; transcript_id "RvY_12086.1"; Scaffold007 rebuild transcript 619204 620175 . + . gene_id "RvY_12087"; transcript_id "RvY_12087.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 619204 619315 . + . gene_id "RvY_12087"; transcript_id "RvY_12087.1"; Scaffold007 rebuild exon 619703 620175 . + . gene_id "RvY_12087"; transcript_id "RvY_12087.1"; Scaffold007 rebuild transcript 622530 623805 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 622530 622604 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; Scaffold007 rebuild exon 622676 622719 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; Scaffold007 rebuild exon 622781 623079 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; Scaffold007 rebuild exon 623193 623256 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; Scaffold007 rebuild exon 623318 623366 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; Scaffold007 rebuild exon 623443 623805 . - . gene_id "RvY_12088"; transcript_id "RvY_12088.1"; Scaffold007 rebuild transcript 630358 630669 . - . gene_id "RvY_12089"; transcript_id "RvY_12089.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 630358 630669 . - . gene_id "RvY_12089"; transcript_id "RvY_12089.1"; Scaffold007 rebuild transcript 631747 632031 . - . gene_id "RvY_12090"; transcript_id "RvY_12090.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 631747 632031 . - . gene_id "RvY_12090"; transcript_id "RvY_12090.1"; Scaffold007 rebuild transcript 632576 633962 . - . gene_id "RvY_12091"; transcript_id "RvY_12091.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 632576 633165 . - . gene_id "RvY_12091"; transcript_id "RvY_12091.1"; Scaffold007 rebuild exon 633244 633533 . - . gene_id "RvY_12091"; transcript_id "RvY_12091.1"; Scaffold007 rebuild exon 633632 633824 . - . gene_id "RvY_12091"; transcript_id "RvY_12091.1"; Scaffold007 rebuild exon 633899 633962 . - . gene_id "RvY_12091"; transcript_id "RvY_12091.1"; Scaffold007 rebuild transcript 635426 635659 . + . gene_id "RvY_12092"; transcript_id "RvY_12092.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 635426 635659 . + . gene_id "RvY_12092"; transcript_id "RvY_12092.1"; Scaffold007 rebuild transcript 637915 638952 . + . gene_id "RvY_12093"; transcript_id "RvY_12093.0"; product "CAHS10"; annotation "CAHS10 | hypothetical protein."; Scaffold007 rebuild exon 637915 637992 . + . gene_id "RvY_12093"; transcript_id "RvY_12093.0"; Scaffold007 rebuild exon 638122 638202 . + . gene_id "RvY_12093"; transcript_id "RvY_12093.0"; Scaffold007 rebuild exon 638290 638531 . + . gene_id "RvY_12093"; transcript_id "RvY_12093.0"; Scaffold007 rebuild exon 638614 638761 . + . gene_id "RvY_12093"; transcript_id "RvY_12093.0"; Scaffold007 rebuild exon 638836 638952 . + . gene_id "RvY_12093"; transcript_id "RvY_12093.0"; Scaffold007 rebuild transcript 639376 641081 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 639376 639626 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; Scaffold007 rebuild exon 639688 639988 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; Scaffold007 rebuild exon 640139 640438 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; Scaffold007 rebuild exon 640594 640762 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; Scaffold007 rebuild exon 640824 640965 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; Scaffold007 rebuild exon 641066 641081 . - . gene_id "RvY_12094"; transcript_id "RvY_12094.1"; Scaffold007 rebuild transcript 642083 643657 . - . gene_id "RvY_12095"; transcript_id "RvY_12095.1"; gene_name "CTH1"; annotation "hypothetical protein."; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)"; CDD "CCCH-type Zn-finger protein [General function prediction only]"; Scaffold007 rebuild exon 642083 642195 . - . gene_id "RvY_12095"; transcript_id "RvY_12095.1"; Scaffold007 rebuild exon 642446 643112 . - . gene_id "RvY_12095"; transcript_id "RvY_12095.1"; Scaffold007 rebuild exon 643505 643657 . - . gene_id "RvY_12095"; transcript_id "RvY_12095.1"; Scaffold007 rebuild transcript 646618 649562 . + . gene_id "RvY_12096"; transcript_id "RvY_12096.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 646618 646625 . + . gene_id "RvY_12096"; transcript_id "RvY_12096.1"; Scaffold007 rebuild exon 648233 648767 . + . gene_id "RvY_12096"; transcript_id "RvY_12096.1"; Scaffold007 rebuild exon 649126 649363 . + . gene_id "RvY_12096"; transcript_id "RvY_12096.1"; Scaffold007 rebuild exon 649456 649562 . + . gene_id "RvY_12096"; transcript_id "RvY_12096.1"; Scaffold007 rebuild transcript 650359 660115 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; annotation "hypothetical protein."; Pfam "[Med13_N] Mediator complex subunit 13 N-terminal|[Med13_C] Mediator complex subunit 13 C-terminal"; KO "K15164"; similar_genes "MED13_DROME(e-value:1.2e-13;bit-score:74.0)"; Scaffold007 rebuild exon 650359 650491 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 650775 650887 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 650947 651099 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 651291 651802 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 652058 652200 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 652272 652745 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 653106 653424 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 653482 653662 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 653810 654283 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 654578 654944 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 655191 655998 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 656264 656596 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 656708 657142 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 657380 657669 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 657742 657855 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 657932 658217 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 658423 658551 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 658634 658867 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 658997 659329 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 659715 659979 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild exon 660053 660115 . - . gene_id "RvY_12097"; transcript_id "RvY_12097.1"; Scaffold007 rebuild transcript 661407 661958 . - . gene_id "RvY_12098"; transcript_id "RvY_12098.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 661407 661789 . - . gene_id "RvY_12098"; transcript_id "RvY_12098.1"; Scaffold007 rebuild exon 661847 661958 . - . gene_id "RvY_12098"; transcript_id "RvY_12098.1"; Scaffold007 rebuild transcript 662426 666161 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[CH] Calponin homology (CH) domain|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "LRCH1_HUMAN(e-value:2.5e-18;bit-score:90.0)"; Scaffold007 rebuild exon 662426 662720 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 662900 663044 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 663265 663497 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 663706 663842 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 663917 664011 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 664067 664540 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 664802 665072 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 665149 665340 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 665405 665629 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild exon 665913 666161 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.1"; Scaffold007 rebuild transcript 662426 666427 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[CH] Calponin homology (CH) domain|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; similar_genes "LRCH1_HUMAN(e-value:2.5e-18;bit-score:90.0)"; Scaffold007 rebuild exon 662426 662720 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 662900 663044 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 663265 663497 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 663706 663842 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 663917 664011 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 664067 664540 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 664802 665072 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 665149 665340 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 665405 665629 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild exon 666233 666427 . + . gene_id "RvY_12099"; transcript_id "RvY_12099.2"; Scaffold007 rebuild transcript 667001 668083 . - . gene_id "RvY_12100"; transcript_id "RvY_12100.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 667001 668083 . - . gene_id "RvY_12100"; transcript_id "RvY_12100.1"; Scaffold007 rebuild transcript 669253 670001 . - . gene_id "RvY_12101"; transcript_id "RvY_12101.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 669253 669751 . - . gene_id "RvY_12101"; transcript_id "RvY_12101.1"; Scaffold007 rebuild exon 669871 670001 . - . gene_id "RvY_12101"; transcript_id "RvY_12101.1"; Scaffold007 rebuild transcript 671572 672255 . - . gene_id "RvY_12102"; transcript_id "RvY_12102.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 671572 672255 . - . gene_id "RvY_12102"; transcript_id "RvY_12102.1"; Scaffold007 rebuild transcript 672581 673279 . - . gene_id "RvY_12103"; transcript_id "RvY_12103.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 672581 673279 . - . gene_id "RvY_12103"; transcript_id "RvY_12103.1"; Scaffold007 rebuild transcript 677753 681108 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; gene_name "CPD"; annotation "putative Carboxypeptidase E"; Pfam "[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|[Peptidase_M14] Zinc carboxypeptidase|[Cna_B_2] Cna protein B-type domain"; CDD "Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically Scaffold007 rebuild exon 677753 678257 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; Scaffold007 rebuild exon 678530 678776 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; Scaffold007 rebuild exon 679116 679462 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; Scaffold007 rebuild exon 679547 679931 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; Scaffold007 rebuild exon 680295 680578 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; Scaffold007 rebuild exon 680849 681108 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.1"; Scaffold007 rebuild transcript 677753 680604 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.2"; gene_name "CPD"; annotation "putative Carboxypeptidase E"; Pfam "[CarboxypepD_reg] Carboxypeptidase regulatory-like domain|[Peptidase_M14] Zinc carboxypeptidase|[Cna_B_2] Cna protein B-type domain"; CDD "Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically Scaffold007 rebuild exon 677753 678257 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.2"; Scaffold007 rebuild exon 678530 678776 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.2"; Scaffold007 rebuild exon 679116 679462 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.2"; Scaffold007 rebuild exon 679547 679931 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.2"; Scaffold007 rebuild exon 680295 680604 . + . gene_id "RvY_12104"; transcript_id "RvY_12104.2"; Scaffold007 rebuild transcript 682102 682323 . + . gene_id "RvY_12105"; transcript_id "RvY_12105.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 682102 682323 . + . gene_id "RvY_12105"; transcript_id "RvY_12105.1"; Scaffold007 rebuild transcript 682785 685212 . - . gene_id "RvY_12106"; transcript_id "RvY_12106.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 682785 683107 . - . gene_id "RvY_12106"; transcript_id "RvY_12106.1"; Scaffold007 rebuild exon 685173 685212 . - . gene_id "RvY_12106"; transcript_id "RvY_12106.1"; Scaffold007 rebuild transcript 686043 690529 . - . gene_id "RvY_12107"; transcript_id "RvY_12107.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 686043 686242 . - . gene_id "RvY_12107"; transcript_id "RvY_12107.1"; Scaffold007 rebuild exon 686302 686429 . - . gene_id "RvY_12107"; transcript_id "RvY_12107.1"; Scaffold007 rebuild exon 686490 686839 . - . gene_id "RvY_12107"; transcript_id "RvY_12107.1"; Scaffold007 rebuild exon 687682 688080 . - . gene_id "RvY_12107"; transcript_id "RvY_12107.1"; Scaffold007 rebuild exon 690335 690529 . - . gene_id "RvY_12107"; transcript_id "RvY_12107.1"; Scaffold007 rebuild transcript 691405 692472 . - . gene_id "RvY_12108"; transcript_id "RvY_12108.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 691405 692472 . - . gene_id "RvY_12108"; transcript_id "RvY_12108.1"; Scaffold007 rebuild transcript 692544 694766 . + . gene_id "RvY_12109"; transcript_id "RvY_12109.1"; gene_name "retropepsin_like"; annotation "hypothetical protein."; CDD "Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The Scaffold007 rebuild exon 692544 692546 . + . gene_id "RvY_12109"; transcript_id "RvY_12109.1"; Scaffold007 rebuild exon 693574 693853 . + . gene_id "RvY_12109"; transcript_id "RvY_12109.1"; Scaffold007 rebuild exon 693883 694766 . + . gene_id "RvY_12109"; transcript_id "RvY_12109.1"; Scaffold007 rebuild transcript 695221 695926 . + . gene_id "RvY_12110"; transcript_id "RvY_12110.1"; gene_name "RT_LTR"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses."; Scaffold007 rebuild exon 695221 695811 . + . gene_id "RvY_12110"; transcript_id "RvY_12110.1"; Scaffold007 rebuild exon 695861 695926 . + . gene_id "RvY_12110"; transcript_id "RvY_12110.1"; Scaffold007 rebuild transcript 696782 698064 . - . gene_id "RvY_12111"; transcript_id "RvY_12111.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 696782 697232 . - . gene_id "RvY_12111"; transcript_id "RvY_12111.1"; Scaffold007 rebuild exon 697481 698064 . - . gene_id "RvY_12111"; transcript_id "RvY_12111.1"; Scaffold007 rebuild transcript 698072 698257 . + . gene_id "RvY_12112"; transcript_id "RvY_12112.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 698072 698257 . + . gene_id "RvY_12112"; transcript_id "RvY_12112.1"; Scaffold007 rebuild transcript 698260 698811 . - . gene_id "RvY_12113"; transcript_id "RvY_12113.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 698260 698394 . - . gene_id "RvY_12113"; transcript_id "RvY_12113.1"; Scaffold007 rebuild exon 698716 698811 . - . gene_id "RvY_12113"; transcript_id "RvY_12113.1"; Scaffold007 rebuild transcript 699740 700639 . - . gene_id "RvY_12114"; transcript_id "RvY_12114.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 699740 699948 . - . gene_id "RvY_12114"; transcript_id "RvY_12114.1"; Scaffold007 rebuild exon 700009 700297 . - . gene_id "RvY_12114"; transcript_id "RvY_12114.1"; Scaffold007 rebuild exon 700478 700639 . - . gene_id "RvY_12114"; transcript_id "RvY_12114.1"; Scaffold007 rebuild transcript 704531 709082 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; gene_name "MLX"; annotation "MAX-like protein X"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; CDD "Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins."; KO "K09113"; similar_genes "MLXIP_MOUSE(e-value:3.2e-18;bit-score:90.0)"; Scaffold007 rebuild exon 704531 704703 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 704973 705102 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 705373 705499 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 705568 705667 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 705751 705948 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 706028 706106 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 706175 707151 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 707413 707505 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 707579 707774 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 707955 708160 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 708248 708354 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild exon 708655 709082 . - . gene_id "RvY_12115"; transcript_id "RvY_12115.1"; Scaffold007 rebuild transcript 710922 712240 . + . gene_id "RvY_12116"; transcript_id "RvY_12116.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 710922 710999 . + . gene_id "RvY_12116"; transcript_id "RvY_12116.1"; Scaffold007 rebuild exon 711363 711523 . + . gene_id "RvY_12116"; transcript_id "RvY_12116.1"; Scaffold007 rebuild exon 712021 712240 . + . gene_id "RvY_12116"; transcript_id "RvY_12116.1"; Scaffold007 rebuild transcript 713425 714486 . - . gene_id "RvY_12117"; transcript_id "RvY_12117.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; similar_genes "K2C1_CANFA(e-value:3.9e-06;bit-score:49.0)"; Scaffold007 rebuild exon 713425 713758 . - . gene_id "RvY_12117"; transcript_id "RvY_12117.1"; Scaffold007 rebuild exon 713822 713918 . - . gene_id "RvY_12117"; transcript_id "RvY_12117.1"; Scaffold007 rebuild exon 713998 714289 . - . gene_id "RvY_12117"; transcript_id "RvY_12117.1"; Scaffold007 rebuild exon 714382 714486 . - . gene_id "RvY_12117"; transcript_id "RvY_12117.1"; Scaffold007 rebuild transcript 717833 720358 . + . gene_id "RvY_12118"; transcript_id "RvY_12118.1"; gene_name "B4GALT3"; annotation "putative Beta-1,4-galactosyltransferase 3"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glyco_transf_7N] N-terminal region of glycosyl transferase group 7"; CDD "Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen."; EC "EC2.4.1.-"; KO "K07968"; similar_genes "B4GT3_HUMAN(e-value:1.5e-37;bit-score:154.0)"; Scaffold007 rebuild exon 717833 717921 . + . gene_id "RvY_12118"; transcript_id "RvY_12118.1"; Scaffold007 rebuild exon 718245 718813 . + . gene_id "RvY_12118"; transcript_id "RvY_12118.1"; Scaffold007 rebuild exon 718973 719071 . + . gene_id "RvY_12118"; transcript_id "RvY_12118.1"; Scaffold007 rebuild exon 719210 719470 . + . gene_id "RvY_12118"; transcript_id "RvY_12118.1"; Scaffold007 rebuild exon 720081 720358 . + . gene_id "RvY_12118"; transcript_id "RvY_12118.1"; Scaffold007 rebuild transcript 721404 727266 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; annotation "hypothetical protein."; Pfam "[PAM2] Ataxin-2 C-terminal region|(1,2)[SM-ATX] SM domain found in Ataxin-2|[LsmAD]"; Scaffold007 rebuild exon 721404 721504 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 721584 721728 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 721833 721913 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 721998 722069 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 722337 722520 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 722602 722768 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 722866 722957 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 723335 724665 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 724847 725102 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 725181 725268 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 725454 725661 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 725941 726221 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 726323 726407 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 726525 726721 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild exon 727126 727266 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.1"; Scaffold007 rebuild transcript 721404 727266 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; annotation "hypothetical protein."; Pfam "[PAM2] Ataxin-2 C-terminal region|(1,2)[SM-ATX] SM domain found in Ataxin-2|[LsmAD]"; Scaffold007 rebuild exon 721404 721504 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 721584 721728 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 721836 721913 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 721998 722069 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 722337 722520 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 722605 722768 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 722866 722957 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 723335 724665 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 724847 725102 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 725181 725268 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 725454 725661 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 725941 726221 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 726323 726407 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 726525 726721 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild exon 727126 727266 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.2"; Scaffold007 rebuild transcript 721404 727266 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; annotation "hypothetical protein."; Pfam "[PAM2] Ataxin-2 C-terminal region|(1,2)[SM-ATX] SM domain found in Ataxin-2|[LsmAD]"; Scaffold007 rebuild exon 721404 721504 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 721584 721728 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 722337 722520 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 722605 722768 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 722866 722957 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 723335 724665 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 724847 725102 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 725181 725268 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 725454 725661 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 725941 726221 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 726323 726407 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 726525 726721 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild exon 727126 727266 . + . gene_id "RvY_12119"; transcript_id "RvY_12119.3"; Scaffold007 rebuild transcript 728384 729013 . - . gene_id "RvY_12120"; transcript_id "RvY_12120.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 728384 729013 . - . gene_id "RvY_12120"; transcript_id "RvY_12120.1"; Scaffold007 rebuild transcript 730077 731691 . + . gene_id "RvY_12121"; transcript_id "RvY_12121.1"; gene_name "DPP7"; annotation "dipeptidyl-peptidase II [EC:3.4.14.2]"; Pfam "[Abhydrolase_6] Alpha/beta hydrolase family|[Peptidase_S28] Serine carboxypeptidase S28|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Serine carboxypeptidase S28. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase."; EC "EC3.4.14.2"; KO "K01276"; similar_genes "DPP2_HUMAN(e-value:3.2e-16;bit-score:83.0)"; Scaffold007 rebuild exon 730077 730725 . + . gene_id "RvY_12121"; transcript_id "RvY_12121.1"; Scaffold007 rebuild exon 730816 731135 . + . gene_id "RvY_12121"; transcript_id "RvY_12121.1"; Scaffold007 rebuild exon 731203 731691 . + . gene_id "RvY_12121"; transcript_id "RvY_12121.1"; Scaffold007 rebuild transcript 733803 735365 . + . gene_id "RvY_12122"; transcript_id "RvY_12122.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 733803 734763 . + . gene_id "RvY_12122"; transcript_id "RvY_12122.1"; Scaffold007 rebuild exon 734836 735365 . + . gene_id "RvY_12122"; transcript_id "RvY_12122.1"; Scaffold007 rebuild transcript 735530 740923 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_RAT(e-value:3.1e-14;bit-score:76.0)"; Scaffold007 rebuild exon 735530 735580 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 735662 735753 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 735875 735924 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 735987 736035 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 736097 736244 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 736324 736476 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 736560 736582 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 736646 736692 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 736760 736979 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 737043 737249 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 737311 737545 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 737611 737793 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 737859 738020 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 738083 738221 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 738278 738371 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 738445 738580 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 738667 738900 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 738995 739216 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 739283 739321 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 739413 739456 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 739522 739896 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild exon 740431 740923 . - . gene_id "RvY_12123"; transcript_id "RvY_12123.1"; Scaffold007 rebuild transcript 740984 742945 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.1"; gene_name "AbgB"; annotation "hypothetical protein."; CDD "Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]"; similar_genes "P20D2_HUMAN(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 740984 741033 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.1"; Scaffold007 rebuild exon 741745 742115 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.1"; Scaffold007 rebuild exon 742317 742945 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.1"; Scaffold007 rebuild transcript 741704 742945 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.2"; gene_name "AbgB"; annotation "hypothetical protein."; CDD "Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]"; similar_genes "P20D2_HUMAN(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 741704 742115 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.2"; Scaffold007 rebuild exon 742317 742945 . + . gene_id "RvY_12124"; transcript_id "RvY_12124.2"; Scaffold007 rebuild transcript 741731 742129 . - . gene_id "RvY_12125"; transcript_id "RvY_12125.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 741731 742129 . - . gene_id "RvY_12125"; transcript_id "RvY_12125.1"; Scaffold007 rebuild transcript 742694 743104 . - . gene_id "RvY_12126"; transcript_id "RvY_12126.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 742694 743104 . - . gene_id "RvY_12126"; transcript_id "RvY_12126.1"; Scaffold007 rebuild transcript 742488 742865 . - . gene_id "RvY_12126"; transcript_id "RvY_12126.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 742488 742865 . - . gene_id "RvY_12126"; transcript_id "RvY_12126.2"; Scaffold007 rebuild transcript 743724 748219 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; annotation "Phosphatidylinositol-binding clathrin assembly protein unc-11"; Pfam "[ANTH]|[ENTH]"; similar_genes "PICA_CAEEL(e-value:5.4e-120;bit-score:428.0)"; Scaffold007 rebuild exon 743724 743885 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 744195 744430 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 744494 744718 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 744994 745333 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 745430 745553 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 745615 745709 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 745823 745971 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 746041 746152 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 746241 746337 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 747150 747252 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 747360 747438 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 747648 747790 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild exon 748078 748219 . - . gene_id "RvY_12127"; transcript_id "RvY_12127.1"; Scaffold007 rebuild transcript 749412 750137 . + . gene_id "RvY_12128"; transcript_id "RvY_12128.1"; annotation "hypothetical protein."; Pfam "[DUF2807]"; Scaffold007 rebuild exon 749412 750137 . + . gene_id "RvY_12128"; transcript_id "RvY_12128.1"; Scaffold007 rebuild transcript 753244 754484 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 753244 753408 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.1"; Scaffold007 rebuild exon 753546 753660 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.1"; Scaffold007 rebuild exon 754013 754061 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.1"; Scaffold007 rebuild exon 754145 754484 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.1"; Scaffold007 rebuild transcript 754080 754484 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 754080 754484 . - . gene_id "RvY_12129"; transcript_id "RvY_12129.2"; Scaffold007 rebuild transcript 759180 759392 . - . gene_id "RvY_12130"; transcript_id "RvY_12130.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 759180 759392 . - . gene_id "RvY_12130"; transcript_id "RvY_12130.1"; Scaffold007 rebuild transcript 764225 765707 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; gene_name "(1,2,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 764225 764334 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 764407 764542 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 764608 764784 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 764858 764905 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 764992 765126 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 765211 765285 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 765348 765386 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 765453 765496 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild exon 765587 765707 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.1"; Scaffold007 rebuild transcript 764569 765707 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; gene_name "(1,2,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 764569 764784 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild exon 764858 764905 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild exon 764992 765126 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild exon 765211 765285 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild exon 765348 765386 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild exon 765453 765496 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild exon 765587 765707 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.2"; Scaffold007 rebuild transcript 764044 765054 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; gene_name "(1,2,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 764044 764155 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; Scaffold007 rebuild exon 764229 764334 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; Scaffold007 rebuild exon 764407 764542 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; Scaffold007 rebuild exon 764608 764784 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; Scaffold007 rebuild exon 764858 764905 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; Scaffold007 rebuild exon 764992 765054 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.3"; Scaffold007 rebuild transcript 764914 765707 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.4"; gene_name "(1,2,4)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2,4)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 764914 765285 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.4"; Scaffold007 rebuild exon 765348 765386 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.4"; Scaffold007 rebuild exon 765453 765496 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.4"; Scaffold007 rebuild exon 765587 765707 . - . gene_id "RvY_12131"; transcript_id "RvY_12131.4"; Scaffold007 rebuild transcript 775214 775534 . - . gene_id "RvY_12132"; transcript_id "RvY_12132.1"; annotation "hypothetical protein."; Pfam "[Phage_integr_N2] Phage integrase, N-terminal SAM-like domain|[Phage_integr_N] Phage integrase, N-terminal SAM-like domain"; Scaffold007 rebuild exon 775214 775534 . - . gene_id "RvY_12132"; transcript_id "RvY_12132.1"; Scaffold007 rebuild transcript 775585 775809 . + . gene_id "RvY_12133"; transcript_id "RvY_12133.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 775585 775809 . + . gene_id "RvY_12133"; transcript_id "RvY_12133.1"; Scaffold007 rebuild transcript 777109 777489 . - . gene_id "RvY_12134"; transcript_id "RvY_12134.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 777109 777489 . - . gene_id "RvY_12134"; transcript_id "RvY_12134.1"; Scaffold007 rebuild transcript 779482 780652 . + . gene_id "RvY_12135"; transcript_id "RvY_12135.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 779482 779869 . + . gene_id "RvY_12135"; transcript_id "RvY_12135.1"; Scaffold007 rebuild exon 779934 779958 . + . gene_id "RvY_12135"; transcript_id "RvY_12135.1"; Scaffold007 rebuild exon 780038 780339 . + . gene_id "RvY_12135"; transcript_id "RvY_12135.1"; Scaffold007 rebuild exon 780413 780456 . + . gene_id "RvY_12135"; transcript_id "RvY_12135.1"; Scaffold007 rebuild exon 780527 780652 . + . gene_id "RvY_12135"; transcript_id "RvY_12135.1"; Scaffold007 rebuild transcript 784757 785068 . + . gene_id "RvY_12136"; transcript_id "RvY_12136.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 784757 785068 . + . gene_id "RvY_12136"; transcript_id "RvY_12136.1"; Scaffold007 rebuild transcript 787770 788096 . - . gene_id "RvY_12137"; transcript_id "RvY_12137.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 787770 788096 . - . gene_id "RvY_12137"; transcript_id "RvY_12137.1"; Scaffold007 rebuild transcript 794541 794717 . + . gene_id "RvY_12138"; transcript_id "RvY_12138.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 794541 794717 . + . gene_id "RvY_12138"; transcript_id "RvY_12138.1"; Scaffold007 rebuild transcript 796914 799376 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 796914 797313 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 797391 797415 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 797505 797806 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 798380 798423 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 798491 798529 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 798747 798827 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 798889 799029 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild exon 799110 799376 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.1"; Scaffold007 rebuild transcript 796914 798597 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 796914 797313 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.2"; Scaffold007 rebuild exon 797391 797415 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.2"; Scaffold007 rebuild exon 797510 797806 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.2"; Scaffold007 rebuild exon 798347 798423 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.2"; Scaffold007 rebuild exon 798491 798597 . + . gene_id "RvY_12139"; transcript_id "RvY_12139.2"; Scaffold007 rebuild transcript 800077 802518 . - . gene_id "RvY_12140"; transcript_id "RvY_12140.1"; gene_name "bglX"; annotation "beta-glucosidase [EC:3.2.1.21]"; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain|[Fn3-like] Fibronectin type III-like domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; KO "K05349"; similar_genes "BGLX_SALTY(e-value:2.3e-25;bit-score:113.0)"; Scaffold007 rebuild exon 800077 801717 . - . gene_id "RvY_12140"; transcript_id "RvY_12140.1"; Scaffold007 rebuild exon 801794 802352 . - . gene_id "RvY_12140"; transcript_id "RvY_12140.1"; Scaffold007 rebuild exon 802421 802518 . - . gene_id "RvY_12140"; transcript_id "RvY_12140.1"; Scaffold007 rebuild transcript 803335 804304 . + . gene_id "RvY_12141"; transcript_id "RvY_12141.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 803335 803490 . + . gene_id "RvY_12141"; transcript_id "RvY_12141.1"; Scaffold007 rebuild exon 804215 804304 . + . gene_id "RvY_12141"; transcript_id "RvY_12141.1"; Scaffold007 rebuild transcript 806496 809236 . - . gene_id "RvY_12142"; transcript_id "RvY_12142.1"; gene_name "bglX"; annotation "beta-glucosidase [EC:3.2.1.21]"; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain|[Fn3-like] Fibronectin type III-like domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; KO "K05349"; similar_genes "BGLX_SALTY(e-value:2.3e-25;bit-score:113.0)"; Scaffold007 rebuild exon 806496 808136 . - . gene_id "RvY_12142"; transcript_id "RvY_12142.1"; Scaffold007 rebuild exon 808751 809236 . - . gene_id "RvY_12142"; transcript_id "RvY_12142.1"; Scaffold007 rebuild transcript 811277 818689 . + . gene_id "RvY_12143"; transcript_id "RvY_12143.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 811277 811330 . + . gene_id "RvY_12143"; transcript_id "RvY_12143.1"; Scaffold007 rebuild exon 811503 811710 . + . gene_id "RvY_12143"; transcript_id "RvY_12143.1"; Scaffold007 rebuild exon 818655 818689 . + . gene_id "RvY_12143"; transcript_id "RvY_12143.1"; Scaffold007 rebuild transcript 818964 820373 . + . gene_id "RvY_12144"; transcript_id "RvY_12144.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 818964 819092 . + . gene_id "RvY_12144"; transcript_id "RvY_12144.1"; Scaffold007 rebuild exon 819827 820085 . + . gene_id "RvY_12144"; transcript_id "RvY_12144.1"; Scaffold007 rebuild exon 820162 820373 . + . gene_id "RvY_12144"; transcript_id "RvY_12144.1"; Scaffold007 rebuild transcript 820947 821213 . + . gene_id "RvY_12145"; transcript_id "RvY_12145.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 820947 821213 . + . gene_id "RvY_12145"; transcript_id "RvY_12145.1"; Scaffold007 rebuild transcript 821535 823609 . + . gene_id "RvY_12146"; transcript_id "RvY_12146.1"; gene_name "ABC_MTABC3_MDL1_MDL2"; annotation "hypothetical protein."; Pfam "[ABC_membrane] ABC transporter transmembrane region|[ABC_tran] ABC transporter"; CDD "MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another."; similar_genes "PMD1_SCHPO(e-value:7.3e-18;bit-score:88.0)"; Scaffold007 rebuild exon 821535 821709 . + . gene_id "RvY_12146"; transcript_id "RvY_12146.1"; Scaffold007 rebuild exon 821788 821984 . + . gene_id "RvY_12146"; transcript_id "RvY_12146.1"; Scaffold007 rebuild exon 822076 822474 . + . gene_id "RvY_12146"; transcript_id "RvY_12146.1"; Scaffold007 rebuild exon 822799 823164 . + . gene_id "RvY_12146"; transcript_id "RvY_12146.1"; Scaffold007 rebuild exon 823415 823609 . + . gene_id "RvY_12146"; transcript_id "RvY_12146.1"; Scaffold007 rebuild transcript 823901 828346 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; gene_name "CLECT"; annotation "hypothetical protein."; Pfam "[Lectin_C] Lectin C-type domain|[Herpes_UL45] UL45 protein"; CDD "C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules."; Scaffold007 rebuild exon 823901 824154 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 824213 824273 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 824333 824673 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 824754 825092 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 825157 825366 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 825444 825669 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 825736 825845 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 825907 826065 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 826129 826236 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 826315 826422 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 826493 826578 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 826642 826777 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 826867 826985 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 827094 827324 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 827407 827515 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 827582 827724 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 827798 827931 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 827998 828212 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild exon 828298 828346 . - . gene_id "RvY_12147"; transcript_id "RvY_12147.1"; Scaffold007 rebuild transcript 831490 832167 . + . gene_id "RvY_12148"; transcript_id "RvY_12148.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 831490 832167 . + . gene_id "RvY_12148"; transcript_id "RvY_12148.1"; Scaffold007 rebuild transcript 832203 833571 . + . gene_id "RvY_12149"; transcript_id "RvY_12149.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 832203 832722 . + . gene_id "RvY_12149"; transcript_id "RvY_12149.1"; Scaffold007 rebuild exon 833468 833571 . + . gene_id "RvY_12149"; transcript_id "RvY_12149.1"; Scaffold007 rebuild transcript 833806 835550 . - . gene_id "RvY_12150"; transcript_id "RvY_12150.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 833806 834050 . - . gene_id "RvY_12150"; transcript_id "RvY_12150.1"; Scaffold007 rebuild exon 834695 834991 . - . gene_id "RvY_12150"; transcript_id "RvY_12150.1"; Scaffold007 rebuild exon 835169 835550 . - . gene_id "RvY_12150"; transcript_id "RvY_12150.1"; Scaffold007 rebuild transcript 838084 838680 . - . gene_id "RvY_12151"; transcript_id "RvY_12151.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 838084 838680 . - . gene_id "RvY_12151"; transcript_id "RvY_12151.1"; Scaffold007 rebuild transcript 839822 840958 . - . gene_id "RvY_12152"; transcript_id "RvY_12152.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 839822 839977 . - . gene_id "RvY_12152"; transcript_id "RvY_12152.1"; Scaffold007 rebuild exon 840039 840357 . - . gene_id "RvY_12152"; transcript_id "RvY_12152.1"; Scaffold007 rebuild exon 840636 840958 . - . gene_id "RvY_12152"; transcript_id "RvY_12152.1"; Scaffold007 rebuild transcript 841633 843086 . - . gene_id "RvY_12153"; transcript_id "RvY_12153.1"; gene_name "eIF-4E"; annotation "translation initiation factor eIF-4E"; Pfam "[IF4E] Eukaryotic initiation factor 4E"; KO "K03259"; Scaffold007 rebuild exon 841633 842216 . - . gene_id "RvY_12153"; transcript_id "RvY_12153.1"; Scaffold007 rebuild exon 842630 843086 . - . gene_id "RvY_12153"; transcript_id "RvY_12153.1"; Scaffold007 rebuild transcript 844961 860133 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; gene_name "SPTA"; annotation "Spectrin alpha chain"; Pfam "[efhand] EF hand|[Spectrin] Spectrin repeat|[SH3_2] Variant SH3 domain|[efhand_Ca_insen] Ca2+ insensitive EF hand|[SH3_1] SH3 domain|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair"; CDD "Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here"; KO "K06114"; similar_genes "SPTCA_DROME(e-value:4.6e-204;bit-score:707.0)"; Scaffold007 rebuild exon 844961 845347 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 845615 845839 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 845921 846120 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 849222 849580 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 849813 849991 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 850171 850443 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 850508 850787 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 851090 851388 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 851455 851589 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 851928 852326 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 852491 852589 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 852671 852897 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 852967 853279 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 853594 853906 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 854286 854736 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 854955 855138 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 855255 855633 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 855802 855986 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 856088 856219 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 856419 856766 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 857013 857186 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 857247 857541 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 857862 858295 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 858459 858776 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 859034 859284 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 859350 859496 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 859577 859724 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild exon 860005 860133 . + . gene_id "RvY_12154"; transcript_id "RvY_12154.1"; Scaffold007 rebuild transcript 846487 848730 . - . gene_id "RvY_12155"; transcript_id "RvY_12155.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 846487 847746 . - . gene_id "RvY_12155"; transcript_id "RvY_12155.1"; Scaffold007 rebuild exon 847819 848730 . - . gene_id "RvY_12155"; transcript_id "RvY_12155.1"; Scaffold007 rebuild transcript 860701 862920 . - . gene_id "RvY_12156"; transcript_id "RvY_12156.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 860701 860981 . - . gene_id "RvY_12156"; transcript_id "RvY_12156.1"; Scaffold007 rebuild exon 861316 861798 . - . gene_id "RvY_12156"; transcript_id "RvY_12156.1"; Scaffold007 rebuild exon 862044 862493 . - . gene_id "RvY_12156"; transcript_id "RvY_12156.1"; Scaffold007 rebuild exon 862662 862920 . - . gene_id "RvY_12156"; transcript_id "RvY_12156.1"; Scaffold007 rebuild transcript 863588 867797 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; annotation "hypothetical protein."; Pfam "[DUF3358]|[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; EC "EC3.4.11.2"; similar_genes "AMPN_LACHE(e-value:4.9e-19;bit-score:92.0)"; Scaffold007 rebuild exon 863588 864541 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 864696 864831 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 865117 865385 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 865449 865586 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 865665 866115 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 866191 866384 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 866454 866905 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 866990 867199 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 867277 867414 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 867483 867540 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild exon 867636 867797 . + . gene_id "RvY_12157"; transcript_id "RvY_12157.1"; Scaffold007 rebuild transcript 870213 872406 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; gene_name "(1,3)2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter"; CDD "(1,3)cation transport protein."; Scaffold007 rebuild exon 870213 870479 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild exon 870544 870749 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild exon 870819 871039 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild exon 871108 871362 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild exon 871436 871638 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild exon 871714 871941 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild exon 872017 872406 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.1"; Scaffold007 rebuild transcript 870025 871379 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.2"; gene_name "(1,3)2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter"; CDD "(1,3)cation transport protein."; Scaffold007 rebuild exon 870025 870336 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.2"; Scaffold007 rebuild exon 870553 870749 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.2"; Scaffold007 rebuild exon 870819 871039 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.2"; Scaffold007 rebuild exon 871108 871379 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.2"; Scaffold007 rebuild transcript 871075 872406 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; gene_name "(1,3)2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter"; CDD "(1,3)cation transport protein."; Scaffold007 rebuild exon 871075 871095 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; Scaffold007 rebuild exon 871156 871194 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; Scaffold007 rebuild exon 871269 871362 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; Scaffold007 rebuild exon 871436 871638 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; Scaffold007 rebuild exon 871714 871941 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; Scaffold007 rebuild exon 872017 872406 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.3"; Scaffold007 rebuild transcript 870213 871379 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.4"; gene_name "(1,3)2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(3)[Sugar_tr] Sugar (and other) transporter"; CDD "(1,3)cation transport protein."; Scaffold007 rebuild exon 870213 870479 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.4"; Scaffold007 rebuild exon 870544 870749 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.4"; Scaffold007 rebuild exon 870819 871039 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.4"; Scaffold007 rebuild exon 871126 871379 . - . gene_id "RvY_12158"; transcript_id "RvY_12158.4"; Scaffold007 rebuild transcript 875479 876180 . - . gene_id "RvY_12159"; transcript_id "RvY_12159.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold007 rebuild exon 875479 875953 . - . gene_id "RvY_12159"; transcript_id "RvY_12159.1"; Scaffold007 rebuild exon 876056 876180 . - . gene_id "RvY_12159"; transcript_id "RvY_12159.1"; Scaffold007 rebuild transcript 876886 877440 . - . gene_id "RvY_12160"; transcript_id "RvY_12160.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 876886 877440 . - . gene_id "RvY_12160"; transcript_id "RvY_12160.1"; Scaffold007 rebuild transcript 878888 894259 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain|[HYR]|[F5_F8_type_C] F5/8 type C domain|[CUB]|[GCC2_GCC3] GCC2 and GCC3|[EGF] EGF-like domain|[EGF_CA] Calcium-binding EGF domain|[Sushi] Sushi domain (SCR repeat)|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily"; similar_genes "DLL3_HUMAN(e-value:1.4e-14;bit-score:78.0)"; Scaffold007 rebuild exon 878888 879375 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 879436 879701 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 879963 880208 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 880275 880617 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 880793 882658 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 882907 883118 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 883196 883612 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 883701 883902 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 884143 884613 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 884864 885068 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 885131 885720 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 885826 886245 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 886736 886865 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 886946 887287 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 887574 888106 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 888229 888657 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 888735 888877 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 888945 889465 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 889529 890000 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 890265 890702 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 890771 891614 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 891808 893009 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 893421 893502 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 893895 893925 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild exon 894140 894259 . - . gene_id "RvY_12161"; transcript_id "RvY_12161.1"; Scaffold007 rebuild transcript 895461 898853 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; gene_name "COG3940"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_43] Glycosyl hydrolases family 43"; CDD "Predicted beta-xylosidase [General function prediction only]"; EC "EC3.2.1.55"; similar_genes "ABF2_STRCX(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 895461 895541 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 895597 895663 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 895745 896103 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 896170 896556 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 896616 896762 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 896854 896920 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 896986 897329 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 897728 898144 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild exon 898461 898853 . + . gene_id "RvY_12162"; transcript_id "RvY_12162.1"; Scaffold007 rebuild transcript 899141 900595 . - . gene_id "RvY_12163"; transcript_id "RvY_12163.1"; gene_name "TNG2"; annotation "hypothetical protein."; Pfam "[ING] Inhibitor of growth proteins N-terminal histone-binding|[PHD] PHD-finger"; CDD "Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]"; Scaffold007 rebuild exon 899141 899639 . - . gene_id "RvY_12163"; transcript_id "RvY_12163.1"; Scaffold007 rebuild exon 900135 900595 . - . gene_id "RvY_12163"; transcript_id "RvY_12163.1"; Scaffold007 rebuild transcript 901118 902548 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; gene_name "SIRT6"; annotation "mono-ADP-ribosyltransferase sirtuin 6 [EC:2.4.2.31]"; Pfam "[SIR2] Sir2 family"; CDD "SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span."; EC "EC2.4.2.31"; KO "K11416"; Scaffold007 rebuild exon 901118 901183 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; Scaffold007 rebuild exon 901264 901378 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; Scaffold007 rebuild exon 901455 901803 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; Scaffold007 rebuild exon 901883 901963 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; Scaffold007 rebuild exon 902050 902179 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; Scaffold007 rebuild exon 902267 902548 . + . gene_id "RvY_12164"; transcript_id "RvY_12164.1"; Scaffold007 rebuild transcript 902767 904549 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14841"; Scaffold007 rebuild exon 902767 903042 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild exon 903257 903673 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild exon 903745 903888 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild exon 903969 904032 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild exon 904096 904220 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild exon 904308 904441 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild exon 904501 904549 . - . gene_id "RvY_12165"; transcript_id "RvY_12165.1"; Scaffold007 rebuild transcript 904905 906063 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; gene_name "YcaC_related"; annotation "hypothetical protein."; Pfam "[Isochorismatase] Isochorismatase family"; CDD "YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved Scaffold007 rebuild exon 904905 904962 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild exon 905060 905127 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild exon 905229 905282 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild exon 905401 905550 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild exon 905624 905710 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild exon 905772 905801 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild exon 905914 906063 . + . gene_id "RvY_12166"; transcript_id "RvY_12166.1"; Scaffold007 rebuild transcript 906641 908295 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; gene_name "RPF2"; annotation "hypothetical protein."; Pfam "[Brix]"; CDD "Uncharacterized conserved protein [Function unknown]"; KO "K14847"; similar_genes "BXDC1_MOUSE(e-value:3.4e-07;bit-score:53.0)"; Scaffold007 rebuild exon 906641 906666 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 906729 906861 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 906933 906970 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 907031 907070 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 907179 907260 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 907342 907418 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 907498 907597 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 907667 907769 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 907861 908017 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild exon 908080 908295 . + . gene_id "RvY_12167"; transcript_id "RvY_12167.1"; Scaffold007 rebuild transcript 908497 909583 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 908497 908643 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.1"; Scaffold007 rebuild exon 908843 908947 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.1"; Scaffold007 rebuild exon 909036 909209 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.1"; Scaffold007 rebuild exon 909284 909388 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.1"; Scaffold007 rebuild exon 909461 909583 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.1"; Scaffold007 rebuild transcript 908497 909343 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 908497 908643 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.2"; Scaffold007 rebuild exon 908843 908947 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.2"; Scaffold007 rebuild exon 909036 909209 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.2"; Scaffold007 rebuild exon 909284 909343 . - . gene_id "RvY_12168"; transcript_id "RvY_12168.2"; Scaffold007 rebuild transcript 910028 910532 . - . gene_id "RvY_12169"; transcript_id "RvY_12169.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 910028 910156 . - . gene_id "RvY_12169"; transcript_id "RvY_12169.1"; Scaffold007 rebuild exon 910230 910343 . - . gene_id "RvY_12169"; transcript_id "RvY_12169.1"; Scaffold007 rebuild exon 910422 910532 . - . gene_id "RvY_12169"; transcript_id "RvY_12169.1"; Scaffold007 rebuild transcript 918222 919707 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; gene_name "SULT1E1"; annotation "estrone sulfotransferase [EC:2.8.2.4]"; Pfam "[Sulfotransfer_1] Sulfotransferase domain|[Sulfotransfer_3] Sulfotransferase family"; EC "EC2.8.2.4"; KO "K01016"; Scaffold007 rebuild exon 918222 918334 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; Scaffold007 rebuild exon 918416 918602 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; Scaffold007 rebuild exon 918859 919089 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; Scaffold007 rebuild exon 919162 919394 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; Scaffold007 rebuild exon 919461 919582 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; Scaffold007 rebuild exon 919652 919707 . - . gene_id "RvY_12170"; transcript_id "RvY_12170.1"; Scaffold007 rebuild transcript 921952 923133 . - . gene_id "RvY_12171"; transcript_id "RvY_12171.1"; gene_name "FUT1"; annotation "galactoside 2-L-fucosyltransferase [EC:2.4.1.69]"; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; EC "EC2.4.1.69"; KO "K00718"; Scaffold007 rebuild exon 921952 922374 . - . gene_id "RvY_12171"; transcript_id "RvY_12171.1"; Scaffold007 rebuild exon 922555 923133 . - . gene_id "RvY_12171"; transcript_id "RvY_12171.1"; Scaffold007 rebuild transcript 923496 927757 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; gene_name "ACO"; annotation "Probable cytoplasmic aconitate hydratase"; Pfam "[Aconitase_C] Aconitase C-terminal domain|[Aconitase] Aconitase family (aconitate hydratase)"; CDD "aconitate hydratase; Provisional"; EC "EC4.2.1.3"; KO "K01681"; similar_genes "ACOC_CAEEL(e-value:1.4e-105;bit-score:380.0)"; Scaffold007 rebuild exon 923496 923604 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 923663 923831 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 924073 924210 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 924299 924368 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 924431 924617 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 924693 924832 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 925048 925219 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 925285 925502 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 925568 925727 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 925954 926456 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 926622 927140 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 927382 927567 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild exon 927641 927757 . + . gene_id "RvY_12172"; transcript_id "RvY_12172.1"; Scaffold007 rebuild transcript 928314 928901 . + . gene_id "RvY_12173"; transcript_id "RvY_12173.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 928314 928901 . + . gene_id "RvY_12173"; transcript_id "RvY_12173.1"; Scaffold007 rebuild transcript 929391 943391 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; gene_name "KCNQ5"; annotation "Potassium voltage-gated channel subfamily KQT member 2"; Pfam "[Ion_trans_2] Ion channel|[KCNQ_channel] KCNQ voltage-gated potassium channel|[Ion_trans] Ion transport protein"; KO "K04930"; similar_genes "KCNQ2_HUMAN(e-value:1.2e-79;bit-score:294.0)"; Scaffold007 rebuild exon 929391 929948 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 930016 930112 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 930238 930451 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 930528 931116 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 931361 931471 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 931603 931728 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 931904 932079 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 933791 933917 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 934458 934548 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 941562 941636 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild exon 942625 943391 . - . gene_id "RvY_12174"; transcript_id "RvY_12174.1"; Scaffold007 rebuild transcript 944656 944850 . - . gene_id "RvY_12175"; transcript_id "RvY_12175.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 944656 944850 . - . gene_id "RvY_12175"; transcript_id "RvY_12175.1"; Scaffold007 rebuild transcript 945863 946466 . + . gene_id "RvY_12176"; transcript_id "RvY_12176.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 945863 946087 . + . gene_id "RvY_12176"; transcript_id "RvY_12176.1"; Scaffold007 rebuild exon 946410 946466 . + . gene_id "RvY_12176"; transcript_id "RvY_12176.1"; Scaffold007 rebuild transcript 946571 947082 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 946571 946830 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.1"; Scaffold007 rebuild exon 946905 946970 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.1"; Scaffold007 rebuild exon 947034 947082 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.1"; Scaffold007 rebuild transcript 946504 946916 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 946504 946830 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.2"; Scaffold007 rebuild exon 946905 946916 . - . gene_id "RvY_12177"; transcript_id "RvY_12177.2"; Scaffold007 rebuild transcript 947981 948879 . - . gene_id "RvY_12178"; transcript_id "RvY_12178.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 947981 948243 . - . gene_id "RvY_12178"; transcript_id "RvY_12178.2"; Scaffold007 rebuild exon 948622 948663 . - . gene_id "RvY_12178"; transcript_id "RvY_12178.2"; Scaffold007 rebuild exon 948816 948879 . - . gene_id "RvY_12178"; transcript_id "RvY_12178.2"; Scaffold007 rebuild transcript 952377 953983 . + . gene_id "RvY_12179"; transcript_id "RvY_12179.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 952377 952555 . + . gene_id "RvY_12179"; transcript_id "RvY_12179.1"; Scaffold007 rebuild exon 953389 953983 . + . gene_id "RvY_12179"; transcript_id "RvY_12179.1"; Scaffold007 rebuild transcript 957148 960979 . + . gene_id "RvY_12180"; transcript_id "RvY_12180.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 957148 957253 . + . gene_id "RvY_12180"; transcript_id "RvY_12180.1"; Scaffold007 rebuild exon 960588 960979 . + . gene_id "RvY_12180"; transcript_id "RvY_12180.1"; Scaffold007 rebuild transcript 961854 965962 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 961854 962085 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 962147 962361 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 962877 963062 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 963129 963179 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 963253 963387 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 963449 963526 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 963654 963689 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 963800 963843 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 963911 964233 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 965343 965367 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 965456 965497 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild exon 965653 965962 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.1"; Scaffold007 rebuild transcript 963090 965962 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 963090 963179 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 963253 963387 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 963449 963526 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 963654 963689 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 963800 963843 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 963911 964233 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 965343 965367 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 965456 965497 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild exon 965653 965962 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.2"; Scaffold007 rebuild transcript 962787 965365 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold007 rebuild exon 962787 963062 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 963129 963179 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 963253 963387 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 963449 963526 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 963654 963689 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 963800 963843 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 963911 964233 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild exon 965343 965365 . - . gene_id "RvY_12181"; transcript_id "RvY_12181.3"; Scaffold007 rebuild transcript 966843 968511 . + . gene_id "RvY_12182"; transcript_id "RvY_12182.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 966843 966891 . + . gene_id "RvY_12182"; transcript_id "RvY_12182.1"; Scaffold007 rebuild exon 968345 968511 . + . gene_id "RvY_12182"; transcript_id "RvY_12182.1"; Scaffold007 rebuild transcript 969369 970991 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold007 rebuild exon 969369 969421 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; Scaffold007 rebuild exon 969499 969620 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; Scaffold007 rebuild exon 969691 969926 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; Scaffold007 rebuild exon 970254 970484 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; Scaffold007 rebuild exon 970613 970802 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; Scaffold007 rebuild exon 970879 970991 . + . gene_id "RvY_12183"; transcript_id "RvY_12183.1"; Scaffold007 rebuild transcript 971130 974684 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; gene_name "INB"; annotation "hypothetical protein."; Pfam "[Integrin_beta] Integrin, beta chain"; CDD "Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A ""insert"" or ""I"" -like domain (although this remains to be confirmed)."; similar_genes "ITBX_DROME(e-value:1.5e-22;bit-score:104.0)"; Scaffold007 rebuild exon 971130 971338 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 971402 971536 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 971605 971875 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 971949 972140 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 972216 972294 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 972365 972804 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 972876 973061 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 973119 973295 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 973408 973494 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 973566 973659 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 973731 973827 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 973913 974044 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 974121 974184 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 974310 974414 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild exon 974475 974684 . - . gene_id "RvY_12184"; transcript_id "RvY_12184.1"; Scaffold007 rebuild transcript 975105 976073 . - . gene_id "RvY_12185"; transcript_id "RvY_12185.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 975105 976073 . - . gene_id "RvY_12185"; transcript_id "RvY_12185.1"; Scaffold007 rebuild transcript 979651 981176 . + . gene_id "RvY_12186"; transcript_id "RvY_12186.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 979651 980658 . + . gene_id "RvY_12186"; transcript_id "RvY_12186.1"; Scaffold007 rebuild exon 980772 980930 . + . gene_id "RvY_12186"; transcript_id "RvY_12186.1"; Scaffold007 rebuild exon 981003 981176 . + . gene_id "RvY_12186"; transcript_id "RvY_12186.1"; Scaffold007 rebuild transcript 983293 986831 . + . gene_id "RvY_12187"; transcript_id "RvY_12187.1"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_31] Glycosyl hydrolases family 31"; Scaffold007 rebuild exon 983293 983905 . + . gene_id "RvY_12187"; transcript_id "RvY_12187.1"; Scaffold007 rebuild exon 984118 985302 . + . gene_id "RvY_12187"; transcript_id "RvY_12187.1"; Scaffold007 rebuild exon 986374 986831 . + . gene_id "RvY_12187"; transcript_id "RvY_12187.1"; Scaffold007 rebuild transcript 987550 988207 . - . gene_id "RvY_12188"; transcript_id "RvY_12188.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc3_2] Transposase|[HTH_32] Homeodomain-like domain|[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 987550 987900 . - . gene_id "RvY_12188"; transcript_id "RvY_12188.1"; Scaffold007 rebuild exon 987983 988207 . - . gene_id "RvY_12188"; transcript_id "RvY_12188.1"; Scaffold007 rebuild transcript 990705 992567 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; gene_name "STKc_MAPK"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7."; EC "EC2.7.11.24"; similar_genes "MPK5_ARATH(e-value:2.6e-07;bit-score:53.0)"; Scaffold007 rebuild exon 990705 990760 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 990849 991025 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 991087 991165 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 991228 991355 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 991459 991530 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 991607 991778 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 991861 991890 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 991986 992180 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 992274 992424 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild exon 992488 992567 . - . gene_id "RvY_12189"; transcript_id "RvY_12189.1"; Scaffold007 rebuild transcript 992976 993307 . - . gene_id "RvY_12190"; transcript_id "RvY_12190.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 992976 993191 . - . gene_id "RvY_12190"; transcript_id "RvY_12190.1"; Scaffold007 rebuild exon 993221 993307 . - . gene_id "RvY_12190"; transcript_id "RvY_12190.1"; Scaffold007 rebuild transcript 994441 996100 . - . gene_id "RvY_12191"; transcript_id "RvY_12191.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 994441 994576 . - . gene_id "RvY_12191"; transcript_id "RvY_12191.1"; Scaffold007 rebuild exon 995655 996100 . - . gene_id "RvY_12191"; transcript_id "RvY_12191.1"; Scaffold007 rebuild transcript 996380 996730 . - . gene_id "RvY_12192"; transcript_id "RvY_12192.1"; annotation "hypothetical protein."; Pfam "[Helitron_like_N] Helitron helicase-like domain at N-terminus"; Scaffold007 rebuild exon 996380 996730 . - . gene_id "RvY_12192"; transcript_id "RvY_12192.1"; Scaffold007 rebuild transcript 996890 997557 . - . gene_id "RvY_12193"; transcript_id "RvY_12193.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 996890 997242 . - . gene_id "RvY_12193"; transcript_id "RvY_12193.1"; Scaffold007 rebuild exon 997275 997557 . - . gene_id "RvY_12193"; transcript_id "RvY_12193.1"; Scaffold007 rebuild transcript 1013425 1013841 . + . gene_id "RvY_12194"; transcript_id "RvY_12194.1"; annotation "hypothetical protein."; Pfam "[MULE] MULE transposase domain"; Scaffold007 rebuild exon 1013425 1013841 . + . gene_id "RvY_12194"; transcript_id "RvY_12194.1"; Scaffold007 rebuild transcript 1014917 1017386 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1014917 1015398 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.1"; Scaffold007 rebuild exon 1017116 1017386 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.1"; Scaffold007 rebuild transcript 1014966 1017386 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1014966 1014993 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.2"; Scaffold007 rebuild exon 1015248 1015398 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.2"; Scaffold007 rebuild exon 1017116 1017386 . - . gene_id "RvY_12195"; transcript_id "RvY_12195.2"; Scaffold007 rebuild transcript 1017983 1021332 . - . gene_id "RvY_12196"; transcript_id "RvY_12196.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold007 rebuild exon 1017983 1018299 . - . gene_id "RvY_12196"; transcript_id "RvY_12196.1"; Scaffold007 rebuild exon 1019137 1019650 . - . gene_id "RvY_12196"; transcript_id "RvY_12196.1"; Scaffold007 rebuild exon 1019919 1020405 . - . gene_id "RvY_12196"; transcript_id "RvY_12196.1"; Scaffold007 rebuild exon 1021091 1021332 . - . gene_id "RvY_12196"; transcript_id "RvY_12196.1"; Scaffold007 rebuild transcript 1028171 1029694 . - . gene_id "RvY_12197"; transcript_id "RvY_12197.1"; gene_name "serB"; annotation "phosphoserine phosphatase [EC:3.1.3.3]"; Pfam "[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O"; EC "EC3.1.3.3"; KO "K01079"; similar_genes "SERB_ARATH(e-value:8.1e-15;bit-score:78.0)"; Scaffold007 rebuild exon 1028171 1028296 . - . gene_id "RvY_12197"; transcript_id "RvY_12197.1"; Scaffold007 rebuild exon 1028414 1028562 . - . gene_id "RvY_12197"; transcript_id "RvY_12197.1"; Scaffold007 rebuild exon 1028627 1028772 . - . gene_id "RvY_12197"; transcript_id "RvY_12197.1"; Scaffold007 rebuild exon 1029102 1029401 . - . gene_id "RvY_12197"; transcript_id "RvY_12197.1"; Scaffold007 rebuild exon 1029663 1029694 . - . gene_id "RvY_12197"; transcript_id "RvY_12197.1"; Scaffold007 rebuild transcript 1029895 1030185 . + . gene_id "RvY_12198"; transcript_id "RvY_12198.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1029895 1030185 . + . gene_id "RvY_12198"; transcript_id "RvY_12198.1"; Scaffold007 rebuild transcript 1030741 1032226 . - . gene_id "RvY_12199"; transcript_id "RvY_12199.1"; gene_name "CD2BP2"; annotation "CD2 antigen cytoplasmic tail-binding protein 2"; Pfam "[GYF]"; CDD "GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species."; KO "K13099"; similar_genes "LIN1_DROME(e-value:9.4e-16;bit-score:81.0)"; Scaffold007 rebuild exon 1030741 1030949 . - . gene_id "RvY_12199"; transcript_id "RvY_12199.1"; Scaffold007 rebuild exon 1031019 1031348 . - . gene_id "RvY_12199"; transcript_id "RvY_12199.1"; Scaffold007 rebuild exon 1031509 1031796 . - . gene_id "RvY_12199"; transcript_id "RvY_12199.1"; Scaffold007 rebuild exon 1032019 1032226 . - . gene_id "RvY_12199"; transcript_id "RvY_12199.1"; Scaffold007 rebuild transcript 1032793 1035451 . + . gene_id "RvY_12200"; transcript_id "RvY_12200.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1032793 1032897 . + . gene_id "RvY_12200"; transcript_id "RvY_12200.1"; Scaffold007 rebuild exon 1033326 1034016 . + . gene_id "RvY_12200"; transcript_id "RvY_12200.1"; Scaffold007 rebuild exon 1034198 1034590 . + . gene_id "RvY_12200"; transcript_id "RvY_12200.1"; Scaffold007 rebuild exon 1035348 1035451 . + . gene_id "RvY_12200"; transcript_id "RvY_12200.1"; Scaffold007 rebuild transcript 1036988 1037335 . + . gene_id "RvY_12201"; transcript_id "RvY_12201.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1036988 1037335 . + . gene_id "RvY_12201"; transcript_id "RvY_12201.1"; Scaffold007 rebuild transcript 1037573 1039649 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.1"; annotation "hypothetical protein."; Pfam "[HORMA]"; KO "K13728"; Scaffold007 rebuild exon 1037573 1038521 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.1"; Scaffold007 rebuild exon 1038660 1038996 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.1"; Scaffold007 rebuild exon 1039529 1039649 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.1"; Scaffold007 rebuild transcript 1037573 1039051 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.2"; annotation "hypothetical protein."; Pfam "[HORMA]"; KO "K13728"; Scaffold007 rebuild exon 1037573 1038521 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.2"; Scaffold007 rebuild exon 1038660 1039051 . - . gene_id "RvY_12202"; transcript_id "RvY_12202.2"; Scaffold007 rebuild transcript 1039648 1041842 . + . gene_id "RvY_12203"; transcript_id "RvY_12203.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold007 rebuild exon 1039648 1039846 . + . gene_id "RvY_12203"; transcript_id "RvY_12203.1"; Scaffold007 rebuild exon 1040168 1040811 . + . gene_id "RvY_12203"; transcript_id "RvY_12203.1"; Scaffold007 rebuild exon 1040904 1041842 . + . gene_id "RvY_12203"; transcript_id "RvY_12203.1"; Scaffold007 rebuild transcript 1042173 1042376 . - . gene_id "RvY_12204"; transcript_id "RvY_12204.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1042173 1042376 . - . gene_id "RvY_12204"; transcript_id "RvY_12204.1"; Scaffold007 rebuild transcript 1042452 1043933 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1042452 1042593 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; Scaffold007 rebuild exon 1042659 1042712 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; Scaffold007 rebuild exon 1042843 1042881 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; Scaffold007 rebuild exon 1042956 1043043 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; Scaffold007 rebuild exon 1043119 1043644 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; Scaffold007 rebuild exon 1043787 1043933 . + . gene_id "RvY_12205"; transcript_id "RvY_12205.1"; Scaffold007 rebuild transcript 1044614 1046652 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; annotation "hypothetical protein."; Pfam "[Elongin_A] RNA polymerase II transcription factor SIII (Elongin) subunit A|[Med26] TFIIS helical bundle-like domain"; KO "K15076"; Scaffold007 rebuild exon 1044614 1044666 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1044840 1045040 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1045113 1045194 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1045259 1045464 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1045547 1045597 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1045661 1046141 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1046365 1046421 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild exon 1046569 1046652 . - . gene_id "RvY_12206"; transcript_id "RvY_12206.1"; Scaffold007 rebuild transcript 1048860 1049054 . - . gene_id "RvY_12207"; transcript_id "RvY_12207.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1048860 1049054 . - . gene_id "RvY_12207"; transcript_id "RvY_12207.1"; Scaffold007 rebuild transcript 1049659 1051076 . + . gene_id "RvY_12208"; transcript_id "RvY_12208.1"; annotation "hypothetical protein."; Pfam "[Nop52] Nucleolar protein,Nop52"; KO "K14849"; Scaffold007 rebuild exon 1049659 1049782 . + . gene_id "RvY_12208"; transcript_id "RvY_12208.1"; Scaffold007 rebuild exon 1049852 1049931 . + . gene_id "RvY_12208"; transcript_id "RvY_12208.1"; Scaffold007 rebuild exon 1050237 1050383 . + . gene_id "RvY_12208"; transcript_id "RvY_12208.1"; Scaffold007 rebuild exon 1050453 1050739 . + . gene_id "RvY_12208"; transcript_id "RvY_12208.1"; Scaffold007 rebuild exon 1050809 1051076 . + . gene_id "RvY_12208"; transcript_id "RvY_12208.1"; Scaffold007 rebuild transcript 1051590 1052603 . + . gene_id "RvY_12209"; transcript_id "RvY_12209.1"; annotation "putative Glycine-rich cell wall structural protein 1"; similar_genes "GRP1_PETHY(e-value:1.1e-33;bit-score:141.0)"; Scaffold007 rebuild exon 1051590 1051598 . + . gene_id "RvY_12209"; transcript_id "RvY_12209.1"; Scaffold007 rebuild exon 1051812 1052388 . + . gene_id "RvY_12209"; transcript_id "RvY_12209.1"; Scaffold007 rebuild exon 1052557 1052603 . + . gene_id "RvY_12209"; transcript_id "RvY_12209.1"; Scaffold007 rebuild transcript 1053563 1054018 . - . gene_id "RvY_12210"; transcript_id "RvY_12210.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1053563 1053848 . - . gene_id "RvY_12210"; transcript_id "RvY_12210.1"; Scaffold007 rebuild exon 1053900 1054018 . - . gene_id "RvY_12210"; transcript_id "RvY_12210.1"; Scaffold007 rebuild transcript 1055019 1055627 . - . gene_id "RvY_12211"; transcript_id "RvY_12211.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1055019 1055124 . - . gene_id "RvY_12211"; transcript_id "RvY_12211.1"; Scaffold007 rebuild exon 1055347 1055627 . - . gene_id "RvY_12211"; transcript_id "RvY_12211.1"; Scaffold007 rebuild transcript 1056540 1057096 . - . gene_id "RvY_12212"; transcript_id "RvY_12212.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold007 rebuild exon 1056540 1056811 . - . gene_id "RvY_12212"; transcript_id "RvY_12212.1"; Scaffold007 rebuild exon 1057057 1057096 . - . gene_id "RvY_12212"; transcript_id "RvY_12212.1"; Scaffold007 rebuild transcript 1057098 1057499 . - . gene_id "RvY_12213"; transcript_id "RvY_12213.1"; annotation "hypothetical protein."; Pfam "[DDE_Tnp_1_7] Transposase IS4"; Scaffold007 rebuild exon 1057098 1057499 . - . gene_id "RvY_12213"; transcript_id "RvY_12213.1"; Scaffold007 rebuild transcript 1057519 1057701 . - . gene_id "RvY_12214"; transcript_id "RvY_12214.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1057519 1057701 . - . gene_id "RvY_12214"; transcript_id "RvY_12214.1"; Scaffold007 rebuild transcript 1058720 1067139 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.1"; gene_name "(1)TRHR"; annotation "(1)thyrotropin-releasing hormone receptor(2,3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04282"; similar_genes "(1,2,3)TRFR_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold007 rebuild exon 1058720 1059235 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.1"; Scaffold007 rebuild exon 1059598 1060120 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.1"; Scaffold007 rebuild exon 1065845 1065996 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.1"; Scaffold007 rebuild exon 1066855 1067139 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.1"; Scaffold007 rebuild transcript 1058720 1066914 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.2"; gene_name "(1)TRHR"; annotation "(1)thyrotropin-releasing hormone receptor(2,3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04282"; similar_genes "(1,2,3)TRFR_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold007 rebuild exon 1058720 1059235 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.2"; Scaffold007 rebuild exon 1059598 1060120 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.2"; Scaffold007 rebuild exon 1065845 1065996 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.2"; Scaffold007 rebuild exon 1066855 1066914 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.2"; Scaffold007 rebuild transcript 1058720 1065912 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.3"; gene_name "(1)TRHR"; annotation "(1)thyrotropin-releasing hormone receptor(2,3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04282"; similar_genes "(1,2,3)TRFR_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold007 rebuild exon 1058720 1059235 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.3"; Scaffold007 rebuild exon 1059598 1060120 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.3"; Scaffold007 rebuild exon 1065845 1065912 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.3"; Scaffold007 rebuild transcript 1058720 1060005 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.4"; gene_name "(1)TRHR"; annotation "(1)thyrotropin-releasing hormone receptor(2,3,4)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2,3)[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|(1,2,3)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04282"; similar_genes "(1,2,3)TRFR_CHICK(e-value:1.2e-07;bit-score:55.0)"; Scaffold007 rebuild exon 1058720 1059235 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.4"; Scaffold007 rebuild exon 1059598 1060005 . - . gene_id "RvY_12215"; transcript_id "RvY_12215.4"; Scaffold007 rebuild transcript 1071342 1074176 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold007 rebuild exon 1071342 1071557 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.1"; Scaffold007 rebuild exon 1072268 1072422 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.1"; Scaffold007 rebuild exon 1073576 1074176 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.1"; Scaffold007 rebuild transcript 1073769 1076464 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold007 rebuild exon 1073769 1074095 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.2"; Scaffold007 rebuild exon 1074161 1074392 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.2"; Scaffold007 rebuild exon 1076382 1076464 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.2"; Scaffold007 rebuild transcript 1073769 1074475 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold007 rebuild exon 1073769 1074095 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.3"; Scaffold007 rebuild exon 1074161 1074475 . + . gene_id "RvY_12216"; transcript_id "RvY_12216.3"; Scaffold007 rebuild transcript 1074735 1075065 . - . gene_id "RvY_12217"; transcript_id "RvY_12217.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1074735 1074827 . - . gene_id "RvY_12217"; transcript_id "RvY_12217.1"; Scaffold007 rebuild exon 1074901 1075065 . - . gene_id "RvY_12217"; transcript_id "RvY_12217.1"; Scaffold007 rebuild transcript 1075328 1075755 . - . gene_id "RvY_12218"; transcript_id "RvY_12218.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold007 rebuild exon 1075328 1075389 . - . gene_id "RvY_12218"; transcript_id "RvY_12218.1"; Scaffold007 rebuild exon 1075452 1075755 . - . gene_id "RvY_12218"; transcript_id "RvY_12218.1"; Scaffold007 rebuild transcript 1079215 1079523 . - . gene_id "RvY_12219"; transcript_id "RvY_12219.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1079215 1079523 . - . gene_id "RvY_12219"; transcript_id "RvY_12219.1"; Scaffold007 rebuild transcript 1080325 1080618 . + . gene_id "RvY_12220"; transcript_id "RvY_12220.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1080325 1080618 . + . gene_id "RvY_12220"; transcript_id "RvY_12220.1"; Scaffold007 rebuild transcript 1081274 1082191 . + . gene_id "RvY_12221"; transcript_id "RvY_12221.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1081274 1081342 . + . gene_id "RvY_12221"; transcript_id "RvY_12221.1"; Scaffold007 rebuild exon 1081532 1082191 . + . gene_id "RvY_12221"; transcript_id "RvY_12221.1"; Scaffold007 rebuild transcript 1084694 1087047 . - . gene_id "RvY_12222"; transcript_id "RvY_12222.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1084694 1084811 . - . gene_id "RvY_12222"; transcript_id "RvY_12222.1"; Scaffold007 rebuild exon 1086866 1087047 . - . gene_id "RvY_12222"; transcript_id "RvY_12222.1"; Scaffold007 rebuild transcript 1087781 1088222 . - . gene_id "RvY_12223"; transcript_id "RvY_12223.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1087781 1087918 . - . gene_id "RvY_12223"; transcript_id "RvY_12223.1"; Scaffold007 rebuild exon 1088106 1088222 . - . gene_id "RvY_12223"; transcript_id "RvY_12223.1"; Scaffold007 rebuild transcript 1089812 1090779 . + . gene_id "RvY_12224"; transcript_id "RvY_12224.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1089812 1090025 . + . gene_id "RvY_12224"; transcript_id "RvY_12224.1"; Scaffold007 rebuild exon 1090670 1090779 . + . gene_id "RvY_12224"; transcript_id "RvY_12224.1"; Scaffold007 rebuild transcript 1090546 1091567 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1090546 1091036 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.1"; Scaffold007 rebuild exon 1091174 1091567 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.1"; Scaffold007 rebuild transcript 1090546 1092073 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1090546 1090775 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.2"; Scaffold007 rebuild exon 1090857 1091036 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.2"; Scaffold007 rebuild exon 1091174 1091320 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.2"; Scaffold007 rebuild exon 1091631 1091694 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.2"; Scaffold007 rebuild exon 1091879 1092073 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.2"; Scaffold007 rebuild transcript 1091085 1092073 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1091085 1091320 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.3"; Scaffold007 rebuild exon 1091631 1091694 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.3"; Scaffold007 rebuild exon 1091879 1092073 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.3"; Scaffold007 rebuild transcript 1090901 1092073 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.4"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1090901 1090959 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.4"; Scaffold007 rebuild exon 1091174 1091320 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.4"; Scaffold007 rebuild exon 1091631 1091694 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.4"; Scaffold007 rebuild exon 1091879 1092073 . - . gene_id "RvY_12225"; transcript_id "RvY_12225.4"; Scaffold007 rebuild transcript 1092767 1093271 . + . gene_id "RvY_12226"; transcript_id "RvY_12226.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1092767 1092853 . + . gene_id "RvY_12226"; transcript_id "RvY_12226.1"; Scaffold007 rebuild exon 1092981 1093073 . + . gene_id "RvY_12226"; transcript_id "RvY_12226.1"; Scaffold007 rebuild exon 1093131 1093271 . + . gene_id "RvY_12226"; transcript_id "RvY_12226.1"; Scaffold007 rebuild transcript 1095592 1097043 . + . gene_id "RvY_12227"; transcript_id "RvY_12227.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1095592 1095773 . + . gene_id "RvY_12227"; transcript_id "RvY_12227.1"; Scaffold007 rebuild exon 1096944 1097043 . + . gene_id "RvY_12227"; transcript_id "RvY_12227.1"; Scaffold007 rebuild transcript 1097391 1097747 . + . gene_id "RvY_12228"; transcript_id "RvY_12228.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1097391 1097747 . + . gene_id "RvY_12228"; transcript_id "RvY_12228.1"; Scaffold007 rebuild transcript 1098138 1098658 . + . gene_id "RvY_12229"; transcript_id "RvY_12229.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1098138 1098325 . + . gene_id "RvY_12229"; transcript_id "RvY_12229.1"; Scaffold007 rebuild exon 1098505 1098658 . + . gene_id "RvY_12229"; transcript_id "RvY_12229.1"; Scaffold007 rebuild transcript 1100337 1103287 . + . gene_id "RvY_12230"; transcript_id "RvY_12230.1"; gene_name "TRHR"; annotation "thyrotropin-releasing hormone receptor"; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04282"; similar_genes "TRFR_BOVIN(e-value:3.2e-18;bit-score:90.0)"; Scaffold007 rebuild exon 1100337 1100675 . + . gene_id "RvY_12230"; transcript_id "RvY_12230.1"; Scaffold007 rebuild exon 1101869 1102023 . + . gene_id "RvY_12230"; transcript_id "RvY_12230.1"; Scaffold007 rebuild exon 1102110 1102665 . + . gene_id "RvY_12230"; transcript_id "RvY_12230.1"; Scaffold007 rebuild exon 1102853 1103078 . + . gene_id "RvY_12230"; transcript_id "RvY_12230.1"; Scaffold007 rebuild exon 1103247 1103287 . + . gene_id "RvY_12230"; transcript_id "RvY_12230.1"; Scaffold007 rebuild transcript 1103694 1107981 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold007 rebuild exon 1103694 1103992 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1104052 1104396 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1104559 1104846 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1105511 1105780 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1105844 1106017 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1106168 1106576 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1106752 1107174 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1107379 1107593 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild exon 1107678 1107981 . - . gene_id "RvY_12231"; transcript_id "RvY_12231.1"; Scaffold007 rebuild transcript 1108613 1108900 . - . gene_id "RvY_12232"; transcript_id "RvY_12232.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1108613 1108900 . - . gene_id "RvY_12232"; transcript_id "RvY_12232.1"; Scaffold007 rebuild transcript 1109003 1109293 . + . gene_id "RvY_12233"; transcript_id "RvY_12233.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1109003 1109293 . + . gene_id "RvY_12233"; transcript_id "RvY_12233.1"; Scaffold007 rebuild transcript 1110185 1111093 . - . gene_id "RvY_12234"; transcript_id "RvY_12234.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1110185 1111093 . - . gene_id "RvY_12234"; transcript_id "RvY_12234.1"; Scaffold007 rebuild transcript 1111338 1111574 . + . gene_id "RvY_12235"; transcript_id "RvY_12235.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1111338 1111574 . + . gene_id "RvY_12235"; transcript_id "RvY_12235.1"; Scaffold007 rebuild transcript 1113397 1114146 . - . gene_id "RvY_12236"; transcript_id "RvY_12236.1"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Fn3-like] Fibronectin type III-like domain"; Scaffold007 rebuild exon 1113397 1113908 . - . gene_id "RvY_12236"; transcript_id "RvY_12236.1"; Scaffold007 rebuild exon 1113966 1114146 . - . gene_id "RvY_12236"; transcript_id "RvY_12236.1"; Scaffold007 rebuild transcript 1114198 1115625 . - . gene_id "RvY_12237"; transcript_id "RvY_12237.1"; gene_name "BglX"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; similar_genes "BGLS_RHIRD(e-value:1.2e-07;bit-score:55.0)"; Scaffold007 rebuild exon 1114198 1115150 . - . gene_id "RvY_12237"; transcript_id "RvY_12237.1"; Scaffold007 rebuild exon 1115316 1115625 . - . gene_id "RvY_12237"; transcript_id "RvY_12237.1"; Scaffold007 rebuild transcript 1117590 1120161 . - . gene_id "RvY_12238"; transcript_id "RvY_12238.1"; gene_name "bglX"; annotation "beta-glucosidase [EC:3.2.1.21]"; Pfam "[Glyco_hydro_3_C] Glycosyl hydrolase family 3 C-terminal domain|[Glyco_hydro_3] Glycosyl hydrolase family 3 N terminal domain|[Fn3-like] Fibronectin type III-like domain"; CDD "Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]"; EC "EC3.2.1.21"; KO "K05349"; similar_genes "BGLX_ECOLI(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 1117590 1117815 . - . gene_id "RvY_12238"; transcript_id "RvY_12238.1"; Scaffold007 rebuild exon 1117923 1118268 . - . gene_id "RvY_12238"; transcript_id "RvY_12238.1"; Scaffold007 rebuild exon 1118323 1119252 . - . gene_id "RvY_12238"; transcript_id "RvY_12238.1"; Scaffold007 rebuild exon 1119457 1119959 . - . gene_id "RvY_12238"; transcript_id "RvY_12238.1"; Scaffold007 rebuild exon 1120076 1120161 . - . gene_id "RvY_12238"; transcript_id "RvY_12238.1"; Scaffold007 rebuild transcript 1121035 1123132 . - . gene_id "RvY_12239"; transcript_id "RvY_12239.1"; gene_name "PTZ00004"; annotation "Alpha-centractin"; Pfam "[Actin]"; CDD "actin; Provisional"; similar_genes "ACTZ_CANFA(e-value:1.1e-103;bit-score:374.0)"; Scaffold007 rebuild exon 1121035 1121289 . - . gene_id "RvY_12239"; transcript_id "RvY_12239.1"; Scaffold007 rebuild exon 1121645 1122006 . - . gene_id "RvY_12239"; transcript_id "RvY_12239.1"; Scaffold007 rebuild exon 1122337 1122616 . - . gene_id "RvY_12239"; transcript_id "RvY_12239.1"; Scaffold007 rebuild exon 1122896 1123132 . - . gene_id "RvY_12239"; transcript_id "RvY_12239.1"; Scaffold007 rebuild transcript 1123944 1125890 . + . gene_id "RvY_12240"; transcript_id "RvY_12240.1"; annotation "hypothetical protein."; Pfam "[TFIID_30kDa] Transcription initiation factor TFIID 23-30kDa subunit"; Scaffold007 rebuild exon 1123944 1125015 . + . gene_id "RvY_12240"; transcript_id "RvY_12240.1"; Scaffold007 rebuild exon 1125433 1125890 . + . gene_id "RvY_12240"; transcript_id "RvY_12240.1"; Scaffold007 rebuild transcript 1128593 1130630 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold007 rebuild exon 1128593 1128690 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; Scaffold007 rebuild exon 1128722 1128856 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; Scaffold007 rebuild exon 1128928 1129286 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; Scaffold007 rebuild exon 1129693 1129997 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; Scaffold007 rebuild exon 1130066 1130208 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; Scaffold007 rebuild exon 1130309 1130630 . + . gene_id "RvY_12241"; transcript_id "RvY_12241.1"; Scaffold007 rebuild transcript 1132172 1132728 . - . gene_id "RvY_12242"; transcript_id "RvY_12242.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1132172 1132533 . - . gene_id "RvY_12242"; transcript_id "RvY_12242.1"; Scaffold007 rebuild exon 1132662 1132728 . - . gene_id "RvY_12242"; transcript_id "RvY_12242.1"; Scaffold007 rebuild transcript 1133918 1134694 . + . gene_id "RvY_12243"; transcript_id "RvY_12243.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1133918 1134694 . + . gene_id "RvY_12243"; transcript_id "RvY_12243.1"; Scaffold007 rebuild transcript 1134869 1136299 . + . gene_id "RvY_12244"; transcript_id "RvY_12244.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 1134869 1136299 . + . gene_id "RvY_12244"; transcript_id "RvY_12244.1"; Scaffold007 rebuild transcript 1140379 1140765 . - . gene_id "RvY_12245"; transcript_id "RvY_12245.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1140379 1140765 . - . gene_id "RvY_12245"; transcript_id "RvY_12245.1"; Scaffold007 rebuild transcript 1141428 1144103 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; gene_name "Na_sulph_symp"; annotation "putative Solute carrier family 13 member 5"; Pfam "[Na_sulph_symp] Sodium:sulfate symporter transmembrane region|[CitMHS] Citrate transporter"; CDD "Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1."; KO "K14445"; similar_genes "S13A5_HUMAN(e-value:7.7e-43;bit-score:171.0)"; Scaffold007 rebuild exon 1141428 1141733 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1141800 1141961 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1142134 1142431 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1142498 1142731 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1142799 1143291 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1143367 1143425 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1143575 1143690 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1143766 1143915 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild exon 1144008 1144103 . - . gene_id "RvY_12246"; transcript_id "RvY_12246.1"; Scaffold007 rebuild transcript 1149147 1149311 . - . gene_id "RvY_12247"; transcript_id "RvY_12247.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1149147 1149311 . - . gene_id "RvY_12247"; transcript_id "RvY_12247.1"; Scaffold007 rebuild transcript 1150595 1151083 . + . gene_id "RvY_12248"; transcript_id "RvY_12248.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1150595 1150727 . + . gene_id "RvY_12248"; transcript_id "RvY_12248.1"; Scaffold007 rebuild exon 1150815 1151083 . + . gene_id "RvY_12248"; transcript_id "RvY_12248.1"; Scaffold007 rebuild transcript 1154476 1155327 . + . gene_id "RvY_12249"; transcript_id "RvY_12249.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1154476 1154695 . + . gene_id "RvY_12249"; transcript_id "RvY_12249.1"; Scaffold007 rebuild exon 1155215 1155327 . + . gene_id "RvY_12249"; transcript_id "RvY_12249.1"; Scaffold007 rebuild transcript 1160511 1161321 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.1"; annotation "hypothetical protein."; similar_genes "GRP2_PHAVU(e-value:7.8e-09;bit-score:58.0)"; Scaffold007 rebuild exon 1160511 1161210 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.1"; Scaffold007 rebuild exon 1161302 1161321 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.1"; Scaffold007 rebuild transcript 1160495 1161321 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.3"; annotation "hypothetical protein."; similar_genes "GRP2_PHAVU(e-value:7.8e-09;bit-score:58.0)"; Scaffold007 rebuild exon 1160495 1160552 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.3"; Scaffold007 rebuild exon 1160620 1161210 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.3"; Scaffold007 rebuild exon 1161302 1161321 . + . gene_id "RvY_12250"; transcript_id "RvY_12250.3"; Scaffold007 rebuild transcript 1162285 1163805 . + . gene_id "RvY_12251"; transcript_id "RvY_12251.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1162285 1162911 . + . gene_id "RvY_12251"; transcript_id "RvY_12251.1"; Scaffold007 rebuild exon 1162981 1163805 . + . gene_id "RvY_12251"; transcript_id "RvY_12251.1"; Scaffold007 rebuild transcript 1163826 1166090 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold007 rebuild exon 1163826 1164031 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.1"; Scaffold007 rebuild exon 1164310 1164573 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.1"; Scaffold007 rebuild exon 1164648 1164827 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.1"; Scaffold007 rebuild exon 1164996 1165778 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.1"; Scaffold007 rebuild exon 1165880 1166090 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.1"; Scaffold007 rebuild transcript 1164892 1166090 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.2"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; Scaffold007 rebuild exon 1164892 1165778 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.2"; Scaffold007 rebuild exon 1165880 1166090 . - . gene_id "RvY_12252"; transcript_id "RvY_12252.2"; Scaffold007 rebuild transcript 1167247 1167744 . + . gene_id "RvY_12253"; transcript_id "RvY_12253.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1167247 1167744 . + . gene_id "RvY_12253"; transcript_id "RvY_12253.1"; Scaffold007 rebuild transcript 1169312 1172123 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold007 rebuild exon 1169312 1169473 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.1"; Scaffold007 rebuild exon 1170388 1170546 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.1"; Scaffold007 rebuild exon 1171098 1172123 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.1"; Scaffold007 rebuild transcript 1169312 1171994 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.2"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold007 rebuild exon 1169312 1169473 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.2"; Scaffold007 rebuild exon 1170388 1170546 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.2"; Scaffold007 rebuild exon 1171098 1171994 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.2"; Scaffold007 rebuild transcript 1169312 1171760 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.3"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold007 rebuild exon 1169312 1169473 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.3"; Scaffold007 rebuild exon 1170388 1170546 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.3"; Scaffold007 rebuild exon 1171098 1171760 . - . gene_id "RvY_12254"; transcript_id "RvY_12254.3"; Scaffold007 rebuild transcript 1173898 1174626 . - . gene_id "RvY_12255"; transcript_id "RvY_12255.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1173898 1174626 . - . gene_id "RvY_12255"; transcript_id "RvY_12255.1"; Scaffold007 rebuild transcript 1173898 1174547 . - . gene_id "RvY_12255"; transcript_id "RvY_12255.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1173898 1174359 . - . gene_id "RvY_12255"; transcript_id "RvY_12255.2"; Scaffold007 rebuild exon 1174437 1174547 . - . gene_id "RvY_12255"; transcript_id "RvY_12255.2"; Scaffold007 rebuild transcript 1174690 1174941 . - . gene_id "RvY_12256"; transcript_id "RvY_12256.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1174690 1174941 . - . gene_id "RvY_12256"; transcript_id "RvY_12256.1"; Scaffold007 rebuild transcript 1175012 1176736 . - . gene_id "RvY_12257"; transcript_id "RvY_12257.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 1175012 1176736 . - . gene_id "RvY_12257"; transcript_id "RvY_12257.1"; Scaffold007 rebuild transcript 1178084 1178305 . - . gene_id "RvY_12258"; transcript_id "RvY_12258.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1178084 1178305 . - . gene_id "RvY_12258"; transcript_id "RvY_12258.1"; Scaffold007 rebuild transcript 1179323 1184584 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; gene_name "ABCB1"; annotation "Multidrug resistance protein 2"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[ABC_membrane] ABC transporter transmembrane region|[AAA] ATPase family associated with various cellular activities (AAA)|[DUF258] Protein of unknown function, DUF258|[AAA_17] AAA domain|[AAA_21] AAA domain|[ABC_tran] ABC transporter|[ABC_ATPase] Predicted ATPase of the ABC class"; CDD "multidrug resistance protein (mdr1); Provisional"; EC "EC3.6.3.44"; KO "K05658"; similar_genes "MDR2_MOUSE(e-value:2.6e-58;bit-score:223.0)"; Scaffold007 rebuild exon 1179323 1179335 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1179395 1179576 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1179674 1179760 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1179854 1179932 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1180099 1180378 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1180565 1180736 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1180801 1181115 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1181171 1181460 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1181558 1181759 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1181829 1182612 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1182671 1182831 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1182923 1183594 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1183658 1183786 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1183859 1184042 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1184137 1184340 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild exon 1184418 1184584 . + . gene_id "RvY_12259"; transcript_id "RvY_12259.1"; Scaffold007 rebuild transcript 1186511 1187473 . + . gene_id "RvY_12260"; transcript_id "RvY_12260.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1186511 1186619 . + . gene_id "RvY_12260"; transcript_id "RvY_12260.1"; Scaffold007 rebuild exon 1186921 1187211 . + . gene_id "RvY_12260"; transcript_id "RvY_12260.1"; Scaffold007 rebuild exon 1187286 1187473 . + . gene_id "RvY_12260"; transcript_id "RvY_12260.1"; Scaffold007 rebuild transcript 1187614 1193601 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold007 rebuild exon 1187614 1188450 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild exon 1188772 1189166 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild exon 1189330 1189922 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild exon 1190000 1190368 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild exon 1192493 1192670 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild exon 1192755 1193265 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild exon 1193575 1193601 . + . gene_id "RvY_12261"; transcript_id "RvY_12261.1"; Scaffold007 rebuild transcript 1193614 1194063 . - . gene_id "RvY_12262"; transcript_id "RvY_12262.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1193614 1194063 . - . gene_id "RvY_12262"; transcript_id "RvY_12262.1"; Scaffold007 rebuild transcript 1194946 1195425 . - . gene_id "RvY_12263"; transcript_id "RvY_12263.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1194946 1195425 . - . gene_id "RvY_12263"; transcript_id "RvY_12263.1"; Scaffold007 rebuild transcript 1197661 1201676 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1197661 1198197 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild exon 1198259 1198771 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild exon 1198844 1198993 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild exon 1199742 1199892 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild exon 1200051 1200317 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild exon 1200443 1201253 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild exon 1201523 1201676 . + . gene_id "RvY_12264"; transcript_id "RvY_12264.1"; Scaffold007 rebuild transcript 1201717 1202402 . - . gene_id "RvY_12265"; transcript_id "RvY_12265.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1201717 1202043 . - . gene_id "RvY_12265"; transcript_id "RvY_12265.1"; Scaffold007 rebuild exon 1202343 1202402 . - . gene_id "RvY_12265"; transcript_id "RvY_12265.1"; Scaffold007 rebuild transcript 1205475 1205936 . - . gene_id "RvY_12266"; transcript_id "RvY_12266.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1205475 1205936 . - . gene_id "RvY_12266"; transcript_id "RvY_12266.1"; Scaffold007 rebuild transcript 1206411 1207508 . + . gene_id "RvY_12267"; transcript_id "RvY_12267.1"; gene_name "PEX10"; annotation "hypothetical protein."; CDD "RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; Scaffold007 rebuild exon 1206411 1206468 . + . gene_id "RvY_12267"; transcript_id "RvY_12267.1"; Scaffold007 rebuild exon 1206951 1207136 . + . gene_id "RvY_12267"; transcript_id "RvY_12267.1"; Scaffold007 rebuild exon 1207198 1207508 . + . gene_id "RvY_12267"; transcript_id "RvY_12267.1"; Scaffold007 rebuild transcript 1210278 1212259 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.1"; gene_name "(2)COG4886"; annotation "hypothetical protein."; Pfam "(1)[Lectin_C] Lectin C-type domain|[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "(2)Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold007 rebuild exon 1210278 1210959 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.1"; Scaffold007 rebuild exon 1211011 1211587 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.1"; Scaffold007 rebuild exon 1211671 1211774 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.1"; Scaffold007 rebuild exon 1211836 1211976 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.1"; Scaffold007 rebuild exon 1212039 1212259 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.1"; Scaffold007 rebuild transcript 1210278 1211803 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.2"; gene_name "(2)COG4886"; annotation "hypothetical protein."; Pfam "(1)[Lectin_C] Lectin C-type domain|[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat"; CDD "(2)Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold007 rebuild exon 1210278 1210959 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.2"; Scaffold007 rebuild exon 1211011 1211587 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.2"; Scaffold007 rebuild exon 1211671 1211803 . + . gene_id "RvY_12268"; transcript_id "RvY_12268.2"; Scaffold007 rebuild transcript 1213107 1215019 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1213107 1213242 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.1"; Scaffold007 rebuild exon 1213311 1213377 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.1"; Scaffold007 rebuild exon 1213446 1213587 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.1"; Scaffold007 rebuild exon 1214438 1214665 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.1"; Scaffold007 rebuild exon 1214879 1215019 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.1"; Scaffold007 rebuild transcript 1214369 1215019 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1214369 1214665 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.2"; Scaffold007 rebuild exon 1214879 1215019 . - . gene_id "RvY_12269"; transcript_id "RvY_12269.2"; Scaffold007 rebuild transcript 1218752 1221042 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; gene_name "FDFT1"; annotation "farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]"; Pfam "[SQS_PSY] Squalene/phytoene synthase"; CDD "farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family."; EC "EC2.5.1.21"; KO "K00801"; similar_genes "FDFT_BOVIN(e-value:1.7e-25;bit-score:114.0)"; Scaffold007 rebuild exon 1218752 1219003 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild exon 1219069 1219221 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild exon 1219469 1219837 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild exon 1219918 1220049 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild exon 1220173 1220356 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild exon 1220669 1220766 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild exon 1220944 1221042 . - . gene_id "RvY_12270"; transcript_id "RvY_12270.1"; Scaffold007 rebuild transcript 1226228 1226509 . - . gene_id "RvY_12271"; transcript_id "RvY_12271.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1226228 1226509 . - . gene_id "RvY_12271"; transcript_id "RvY_12271.1"; Scaffold007 rebuild transcript 1227453 1230456 . + . gene_id "RvY_12272"; transcript_id "RvY_12272.1"; gene_name "GATA4_5_6"; annotation "putative Transcription factor elt-1"; Pfam "[GATA] GATA zinc finger"; CDD "Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C"; KO "K09183"; similar_genes "ELT1_CAEEL(e-value:7.4e-37;bit-score:152.0)"; Scaffold007 rebuild exon 1227453 1228311 . + . gene_id "RvY_12272"; transcript_id "RvY_12272.1"; Scaffold007 rebuild exon 1228559 1228632 . + . gene_id "RvY_12272"; transcript_id "RvY_12272.1"; Scaffold007 rebuild exon 1228767 1228880 . + . gene_id "RvY_12272"; transcript_id "RvY_12272.1"; Scaffold007 rebuild exon 1229762 1229890 . + . gene_id "RvY_12272"; transcript_id "RvY_12272.1"; Scaffold007 rebuild exon 1230010 1230456 . + . gene_id "RvY_12272"; transcript_id "RvY_12272.1"; Scaffold007 rebuild transcript 1231039 1232436 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1231039 1231119 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.1"; Scaffold007 rebuild exon 1231672 1232262 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.1"; Scaffold007 rebuild exon 1232395 1232436 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.1"; Scaffold007 rebuild transcript 1231191 1232436 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1231191 1231217 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.2"; Scaffold007 rebuild exon 1231672 1232262 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.2"; Scaffold007 rebuild exon 1232395 1232436 . - . gene_id "RvY_12273"; transcript_id "RvY_12273.2"; Scaffold007 rebuild transcript 1233284 1234303 . + . gene_id "RvY_12274"; transcript_id "RvY_12274.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc3_2] Transposase|[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1233284 1234303 . + . gene_id "RvY_12274"; transcript_id "RvY_12274.1"; Scaffold007 rebuild transcript 1234975 1235752 . + . gene_id "RvY_12275"; transcript_id "RvY_12275.1"; annotation "hypothetical protein."; Pfam "[zf-A20] A20-like zinc finger|[zf-AN1] AN1-like Zinc finger"; similar_genes "SAP6_ORYSJ(e-value:5.0e-21;bit-score:99.0)"; Scaffold007 rebuild exon 1234975 1235524 . + . gene_id "RvY_12275"; transcript_id "RvY_12275.1"; Scaffold007 rebuild exon 1235604 1235752 . + . gene_id "RvY_12275"; transcript_id "RvY_12275.1"; Scaffold007 rebuild transcript 1238365 1238529 . + . gene_id "RvY_12276"; transcript_id "RvY_12276.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1238365 1238529 . + . gene_id "RvY_12276"; transcript_id "RvY_12276.1"; Scaffold007 rebuild transcript 1239677 1240899 . - . gene_id "RvY_12277"; transcript_id "RvY_12277.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1239677 1240425 . - . gene_id "RvY_12277"; transcript_id "RvY_12277.1"; Scaffold007 rebuild exon 1240707 1240899 . - . gene_id "RvY_12277"; transcript_id "RvY_12277.1"; Scaffold007 rebuild transcript 1242714 1245455 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; annotation "hypothetical protein."; Pfam "[VWC] von Willebrand factor type C domain"; Scaffold007 rebuild exon 1242714 1242883 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1242952 1243209 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1243276 1243488 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1243593 1243706 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1243792 1244073 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1244146 1244251 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1244500 1244648 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild exon 1245377 1245455 . - . gene_id "RvY_12278"; transcript_id "RvY_12278.1"; Scaffold007 rebuild transcript 1245932 1246117 . + . gene_id "RvY_12279"; transcript_id "RvY_12279.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1245932 1246117 . + . gene_id "RvY_12279"; transcript_id "RvY_12279.1"; Scaffold007 rebuild transcript 1247711 1249579 . - . gene_id "RvY_12280"; transcript_id "RvY_12280.1"; gene_name "PPP2R3"; annotation "protein phosphatase 2 (formerly 2A), regulatory subunit B''"; Pfam "[EF_hand_5] EF-hand domain pair"; KO "K11583"; similar_genes "P2R3C_BOVIN(e-value:4.0e-10;bit-score:63.0)"; Scaffold007 rebuild exon 1247711 1248283 . - . gene_id "RvY_12280"; transcript_id "RvY_12280.1"; Scaffold007 rebuild exon 1248461 1248832 . - . gene_id "RvY_12280"; transcript_id "RvY_12280.1"; Scaffold007 rebuild exon 1249169 1249579 . - . gene_id "RvY_12280"; transcript_id "RvY_12280.1"; Scaffold007 rebuild transcript 1249256 1249555 . + . gene_id "RvY_12281"; transcript_id "RvY_12281.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1249256 1249555 . + . gene_id "RvY_12281"; transcript_id "RvY_12281.1"; Scaffold007 rebuild transcript 1254906 1255757 . + . gene_id "RvY_12282"; transcript_id "RvY_12282.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1254906 1255757 . + . gene_id "RvY_12282"; transcript_id "RvY_12282.1"; Scaffold007 rebuild transcript 1259909 1260091 . + . gene_id "RvY_12283"; transcript_id "RvY_12283.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1259909 1260091 . + . gene_id "RvY_12283"; transcript_id "RvY_12283.1"; Scaffold007 rebuild transcript 1260668 1260835 . + . gene_id "RvY_12284"; transcript_id "RvY_12284.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1260668 1260835 . + . gene_id "RvY_12284"; transcript_id "RvY_12284.1"; Scaffold007 rebuild transcript 1261956 1263690 . + . gene_id "RvY_12285"; transcript_id "RvY_12285.1"; gene_name "PX_SNX17_31"; annotation "hypothetical protein."; Pfam "[FERM_N] FERM N-terminal domain|[PX]"; CDD "The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some members of the low-density lipoprotein receptor (LDLR) family such as LDLR, VLDLR, ApoER2, and others, regulating their endocytosis. It also binds P-selectin and may regulate its lysosomal degradation. SNX17 is highly expressed in neurons. It binds amyloid precursor protein (APP) and may be involved in its intracellular trafficking and processing to amyloid beta peptide, which plays a central role in the pathogenesis of Alzheimer's disease. The biological function of SNX31 is unknown."; Scaffold007 rebuild exon 1261956 1262402 . + . gene_id "RvY_12285"; transcript_id "RvY_12285.1"; Scaffold007 rebuild exon 1262686 1262892 . + . gene_id "RvY_12285"; transcript_id "RvY_12285.1"; Scaffold007 rebuild exon 1263007 1263690 . + . gene_id "RvY_12285"; transcript_id "RvY_12285.1"; Scaffold007 rebuild transcript 1264664 1269132 . + . gene_id "RvY_12286"; transcript_id "RvY_12286.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1264664 1264702 . + . gene_id "RvY_12286"; transcript_id "RvY_12286.1"; Scaffold007 rebuild exon 1265846 1265958 . + . gene_id "RvY_12286"; transcript_id "RvY_12286.1"; Scaffold007 rebuild exon 1268979 1269132 . + . gene_id "RvY_12286"; transcript_id "RvY_12286.1"; Scaffold007 rebuild transcript 1269351 1270385 . + . gene_id "RvY_12287"; transcript_id "RvY_12287.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1269351 1269474 . + . gene_id "RvY_12287"; transcript_id "RvY_12287.1"; Scaffold007 rebuild exon 1270273 1270385 . + . gene_id "RvY_12287"; transcript_id "RvY_12287.1"; Scaffold007 rebuild transcript 1271801 1272697 . + . gene_id "RvY_12288"; transcript_id "RvY_12288.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1271801 1272697 . + . gene_id "RvY_12288"; transcript_id "RvY_12288.1"; Scaffold007 rebuild transcript 1274828 1278417 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; gene_name "FBXW5"; annotation "putative F-box/WD repeat-containing protein 5"; Pfam "[WD40] WD domain, G-beta repeat|[F-box-like]"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K10263"; similar_genes "FBXW5_RAT(e-value:4.6e-28;bit-score:122.0)"; Scaffold007 rebuild exon 1274828 1274972 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; Scaffold007 rebuild exon 1275296 1275626 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; Scaffold007 rebuild exon 1276496 1276816 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; Scaffold007 rebuild exon 1277070 1277295 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; Scaffold007 rebuild exon 1277509 1278097 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; Scaffold007 rebuild exon 1278200 1278417 . - . gene_id "RvY_12289"; transcript_id "RvY_12289.1"; Scaffold007 rebuild transcript 1279467 1282475 . + . gene_id "RvY_12290"; transcript_id "RvY_12290.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1279467 1279547 . + . gene_id "RvY_12290"; transcript_id "RvY_12290.1"; Scaffold007 rebuild exon 1280543 1280746 . + . gene_id "RvY_12290"; transcript_id "RvY_12290.1"; Scaffold007 rebuild exon 1280812 1280910 . + . gene_id "RvY_12290"; transcript_id "RvY_12290.1"; Scaffold007 rebuild exon 1280991 1281594 . + . gene_id "RvY_12290"; transcript_id "RvY_12290.1"; Scaffold007 rebuild exon 1282201 1282475 . + . gene_id "RvY_12290"; transcript_id "RvY_12290.1"; Scaffold007 rebuild transcript 1282677 1283096 . + . gene_id "RvY_12291"; transcript_id "RvY_12291.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1282677 1282807 . + . gene_id "RvY_12291"; transcript_id "RvY_12291.1"; Scaffold007 rebuild exon 1282877 1283096 . + . gene_id "RvY_12291"; transcript_id "RvY_12291.1"; Scaffold007 rebuild transcript 1283163 1284522 . - . gene_id "RvY_12292"; transcript_id "RvY_12292.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1283163 1283520 . - . gene_id "RvY_12292"; transcript_id "RvY_12292.1"; Scaffold007 rebuild exon 1283627 1283800 . - . gene_id "RvY_12292"; transcript_id "RvY_12292.1"; Scaffold007 rebuild exon 1283870 1284522 . - . gene_id "RvY_12292"; transcript_id "RvY_12292.1"; Scaffold007 rebuild transcript 1285236 1286594 . - . gene_id "RvY_12293"; transcript_id "RvY_12293.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1285236 1285509 . - . gene_id "RvY_12293"; transcript_id "RvY_12293.1"; Scaffold007 rebuild exon 1285583 1285753 . - . gene_id "RvY_12293"; transcript_id "RvY_12293.1"; Scaffold007 rebuild exon 1285836 1285972 . - . gene_id "RvY_12293"; transcript_id "RvY_12293.1"; Scaffold007 rebuild exon 1286070 1286594 . - . gene_id "RvY_12293"; transcript_id "RvY_12293.1"; Scaffold007 rebuild transcript 1288377 1289079 . + . gene_id "RvY_12294"; transcript_id "RvY_12294.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1288377 1288504 . + . gene_id "RvY_12294"; transcript_id "RvY_12294.1"; Scaffold007 rebuild exon 1288563 1288751 . + . gene_id "RvY_12294"; transcript_id "RvY_12294.1"; Scaffold007 rebuild exon 1288821 1289079 . + . gene_id "RvY_12294"; transcript_id "RvY_12294.1"; Scaffold007 rebuild transcript 1290336 1291513 . - . gene_id "RvY_12295"; transcript_id "RvY_12295.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1290336 1290555 . - . gene_id "RvY_12295"; transcript_id "RvY_12295.1"; Scaffold007 rebuild exon 1290622 1290783 . - . gene_id "RvY_12295"; transcript_id "RvY_12295.1"; Scaffold007 rebuild exon 1290867 1291513 . - . gene_id "RvY_12295"; transcript_id "RvY_12295.1"; Scaffold007 rebuild transcript 1294686 1294895 . + . gene_id "RvY_12296"; transcript_id "RvY_12296.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1294686 1294895 . + . gene_id "RvY_12296"; transcript_id "RvY_12296.1"; Scaffold007 rebuild transcript 1297456 1298311 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1297456 1297515 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.1"; Scaffold007 rebuild exon 1297976 1298311 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.1"; Scaffold007 rebuild transcript 1297205 1298021 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1297205 1297515 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.2"; Scaffold007 rebuild exon 1297976 1298021 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.2"; Scaffold007 rebuild transcript 1297205 1297629 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1297205 1297515 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.3"; Scaffold007 rebuild exon 1297617 1297629 . + . gene_id "RvY_12297"; transcript_id "RvY_12297.3"; Scaffold007 rebuild transcript 1303419 1304523 . - . gene_id "RvY_12298"; transcript_id "RvY_12298.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1303419 1303604 . - . gene_id "RvY_12298"; transcript_id "RvY_12298.1"; Scaffold007 rebuild exon 1304038 1304523 . - . gene_id "RvY_12298"; transcript_id "RvY_12298.1"; Scaffold007 rebuild transcript 1306796 1308090 . - . gene_id "RvY_12299"; transcript_id "RvY_12299.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1306796 1306916 . - . gene_id "RvY_12299"; transcript_id "RvY_12299.1"; Scaffold007 rebuild exon 1307064 1307436 . - . gene_id "RvY_12299"; transcript_id "RvY_12299.1"; Scaffold007 rebuild exon 1308066 1308090 . - . gene_id "RvY_12299"; transcript_id "RvY_12299.1"; Scaffold007 rebuild transcript 1309473 1313448 . - . gene_id "RvY_12300"; transcript_id "RvY_12300.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1309473 1310054 . - . gene_id "RvY_12300"; transcript_id "RvY_12300.1"; Scaffold007 rebuild exon 1312603 1313448 . - . gene_id "RvY_12300"; transcript_id "RvY_12300.1"; Scaffold007 rebuild transcript 1315318 1316184 . - . gene_id "RvY_12301"; transcript_id "RvY_12301.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1315318 1316184 . - . gene_id "RvY_12301"; transcript_id "RvY_12301.1"; Scaffold007 rebuild transcript 1320211 1321531 . + . gene_id "RvY_12302"; transcript_id "RvY_12302.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1320211 1320292 . + . gene_id "RvY_12302"; transcript_id "RvY_12302.1"; Scaffold007 rebuild exon 1321461 1321531 . + . gene_id "RvY_12302"; transcript_id "RvY_12302.1"; Scaffold007 rebuild transcript 1325067 1327217 . - . gene_id "RvY_12303"; transcript_id "RvY_12303.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1325067 1325294 . - . gene_id "RvY_12303"; transcript_id "RvY_12303.1"; Scaffold007 rebuild exon 1327104 1327217 . - . gene_id "RvY_12303"; transcript_id "RvY_12303.1"; Scaffold007 rebuild transcript 1329485 1330255 . - . gene_id "RvY_12304"; transcript_id "RvY_12304.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1329485 1329610 . - . gene_id "RvY_12304"; transcript_id "RvY_12304.1"; Scaffold007 rebuild exon 1329722 1330255 . - . gene_id "RvY_12304"; transcript_id "RvY_12304.1"; Scaffold007 rebuild transcript 1333712 1335076 . + . gene_id "RvY_12305"; transcript_id "RvY_12305.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1333712 1333777 . + . gene_id "RvY_12305"; transcript_id "RvY_12305.1"; Scaffold007 rebuild exon 1334999 1335076 . + . gene_id "RvY_12305"; transcript_id "RvY_12305.1"; Scaffold007 rebuild transcript 1335647 1336988 . - . gene_id "RvY_12306"; transcript_id "RvY_12306.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1335647 1335872 . - . gene_id "RvY_12306"; transcript_id "RvY_12306.1"; Scaffold007 rebuild exon 1335944 1336090 . - . gene_id "RvY_12306"; transcript_id "RvY_12306.1"; Scaffold007 rebuild exon 1336177 1336988 . - . gene_id "RvY_12306"; transcript_id "RvY_12306.1"; Scaffold007 rebuild transcript 1337932 1342877 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; gene_name "(1)PKD(2)S_TKc"; annotation "Serine/threonine-protein kinase D1"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.13"; KO "(1)K06070"; similar_genes "(1)KPCD1_RAT(e-value:1.9e-126;bit-score:449.0)(2)KPCD1_HUMAN(e-value:2.7e-83;bit-score:306.0)"; Scaffold007 rebuild exon 1337932 1338284 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1338398 1338424 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1338498 1338709 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1338979 1339772 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1340159 1340256 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1340901 1341287 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1341762 1342284 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild exon 1342614 1342877 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.1"; Scaffold007 rebuild transcript 1338454 1342877 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; gene_name "(1)PKD(2)S_TKc"; annotation "Serine/threonine-protein kinase D1"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.13"; KO "(1)K06070"; similar_genes "(1)KPCD1_RAT(e-value:1.9e-126;bit-score:449.0)(2)KPCD1_HUMAN(e-value:2.7e-83;bit-score:306.0)"; Scaffold007 rebuild exon 1338454 1338709 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; Scaffold007 rebuild exon 1338979 1339772 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; Scaffold007 rebuild exon 1340159 1340256 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; Scaffold007 rebuild exon 1340901 1341287 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; Scaffold007 rebuild exon 1341762 1342284 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; Scaffold007 rebuild exon 1342614 1342877 . - . gene_id "RvY_12307"; transcript_id "RvY_12307.2"; Scaffold007 rebuild transcript 1344122 1344424 . - . gene_id "RvY_12308"; transcript_id "RvY_12308.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1344122 1344424 . - . gene_id "RvY_12308"; transcript_id "RvY_12308.1"; Scaffold007 rebuild transcript 1344448 1349867 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; product "serine/threonine-protein kinase ULK2/ATG1?"; gene_name "ULK"; annotation "serine/threonine-protein kinase ULK2/ATG1? | putative Serine/threonine-protein kinase unc-51"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[DUF3543]"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08269"; similar_genes "UNC51_CAEEL(e-value:9.0e-46;bit-score:181.0)"; Scaffold007 rebuild exon 1344448 1344660 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1345265 1345407 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1345537 1345655 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1345936 1346217 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1346504 1347039 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1347318 1347629 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1347922 1348200 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1348499 1348854 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1348918 1348987 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1349200 1349250 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1349598 1349687 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild exon 1349769 1349867 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.1"; Scaffold007 rebuild transcript 1344448 1349867 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; product "serine/threonine-protein kinase ULK2/ATG1?"; gene_name "ULK"; annotation "serine/threonine-protein kinase ULK2/ATG1? | putative Serine/threonine-protein kinase unc-51"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[DUF3543]"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08269"; similar_genes "UNC51_CAEEL(e-value:9.0e-46;bit-score:181.0)"; Scaffold007 rebuild exon 1344448 1344660 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1345265 1345407 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1345537 1345655 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1345936 1346217 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1346504 1347039 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1347318 1347629 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1347922 1348200 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1348499 1348851 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1348918 1348987 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1349200 1349250 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1349598 1349687 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild exon 1349769 1349867 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.2"; Scaffold007 rebuild transcript 1346500 1349867 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; product "serine/threonine-protein kinase ULK2/ATG1?"; gene_name "ULK"; annotation "serine/threonine-protein kinase ULK2/ATG1? | putative Serine/threonine-protein kinase unc-51"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|(1,2)[DUF3543]"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08269"; similar_genes "UNC51_CAEEL(e-value:9.0e-46;bit-score:181.0)"; Scaffold007 rebuild exon 1346500 1347039 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1347318 1347629 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1347922 1348200 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1348499 1348854 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1348918 1348987 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1349200 1349250 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1349598 1349687 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild exon 1349769 1349867 . - . gene_id "RvY_12309"; transcript_id "RvY_12309.3"; Scaffold007 rebuild transcript 1356586 1359830 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; annotation "hypothetical protein."; Pfam "[TUDOR] Tudor domain"; Scaffold007 rebuild exon 1356586 1356946 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild exon 1357079 1357782 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild exon 1358231 1358609 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild exon 1358670 1358794 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild exon 1358854 1359040 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild exon 1359216 1359428 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild exon 1359688 1359830 . + . gene_id "RvY_12310"; transcript_id "RvY_12310.1"; Scaffold007 rebuild transcript 1360500 1362426 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; annotation "Transmembrane protein 120A"; Pfam "[TMPIT] TMPIT-like protein"; similar_genes "T120A_HUMAN(e-value:4.1e-84;bit-score:308.0)"; Scaffold007 rebuild exon 1360500 1360640 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1360773 1360841 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1360912 1360976 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1361039 1361134 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1361327 1361454 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1361532 1361621 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1361700 1361795 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1361861 1361920 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1361982 1362095 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1362158 1362276 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild exon 1362346 1362426 . - . gene_id "RvY_12311"; transcript_id "RvY_12311.1"; Scaffold007 rebuild transcript 1363134 1366077 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; annotation "hypothetical protein."; Pfam "[PPR_3] Pentatricopeptide repeat domain|[PPR_2] PPR repeat family"; similar_genes "PTCD3_MOUSE(e-value:2.1e-13;bit-score:74.0)"; Scaffold007 rebuild exon 1363134 1363143 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; Scaffold007 rebuild exon 1363205 1363501 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; Scaffold007 rebuild exon 1363662 1364233 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; Scaffold007 rebuild exon 1364460 1365073 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; Scaffold007 rebuild exon 1365138 1365462 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; Scaffold007 rebuild exon 1365811 1366077 . + . gene_id "RvY_12312"; transcript_id "RvY_12312.1"; Scaffold007 rebuild transcript 1366467 1369248 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; gene_name "b_cpa1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "sodium/hydrogen exchanger 3. This Hmm is specific for the eukaryotic members members of this family."; KO "K14724"; similar_genes "SL9A4_RAT(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 1366467 1367287 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; Scaffold007 rebuild exon 1367350 1367554 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; Scaffold007 rebuild exon 1367627 1367835 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; Scaffold007 rebuild exon 1368121 1368452 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; Scaffold007 rebuild exon 1368513 1368774 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; Scaffold007 rebuild exon 1368888 1369248 . + . gene_id "RvY_12313"; transcript_id "RvY_12313.1"; Scaffold007 rebuild transcript 1369413 1372073 . - . gene_id "RvY_12314"; transcript_id "RvY_12314.1"; annotation "hypothetical protein."; Pfam "[Surp] Surp module|[DRY_EERY] Alternative splicing regulator"; similar_genes "SFRS8_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold007 rebuild exon 1369413 1370978 . - . gene_id "RvY_12314"; transcript_id "RvY_12314.1"; Scaffold007 rebuild exon 1371101 1371575 . - . gene_id "RvY_12314"; transcript_id "RvY_12314.1"; Scaffold007 rebuild exon 1371856 1372073 . - . gene_id "RvY_12314"; transcript_id "RvY_12314.1"; Scaffold007 rebuild transcript 1372876 1375074 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; gene_name "(1,2)RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1,2)RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold007 rebuild exon 1372876 1372922 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild exon 1373002 1373131 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild exon 1373192 1373240 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild exon 1373333 1373397 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild exon 1373705 1373828 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild exon 1374099 1374569 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild exon 1374851 1375074 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.1"; Scaffold007 rebuild transcript 1372876 1375074 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; gene_name "(1,2)RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1,2)RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold007 rebuild exon 1372876 1372922 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild exon 1373002 1373131 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild exon 1373192 1373240 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild exon 1373333 1373397 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild exon 1373705 1373813 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild exon 1374099 1374569 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild exon 1374851 1375074 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.2"; Scaffold007 rebuild transcript 1372424 1373087 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.3"; gene_name "(1,2)RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1,2)RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold007 rebuild exon 1372424 1372922 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.3"; Scaffold007 rebuild exon 1373002 1373087 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.3"; Scaffold007 rebuild transcript 1372072 1373087 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.4"; gene_name "(1,2)RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "(1,2)RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold007 rebuild exon 1372072 1372136 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.4"; Scaffold007 rebuild exon 1372489 1372922 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.4"; Scaffold007 rebuild exon 1373002 1373087 . + . gene_id "RvY_12315"; transcript_id "RvY_12315.4"; Scaffold007 rebuild transcript 1375856 1376224 . + . gene_id "RvY_12316"; transcript_id "RvY_12316.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1375856 1376224 . + . gene_id "RvY_12316"; transcript_id "RvY_12316.1"; Scaffold007 rebuild transcript 1377928 1378299 . + . gene_id "RvY_12317"; transcript_id "RvY_12317.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1377928 1378299 . + . gene_id "RvY_12317"; transcript_id "RvY_12317.1"; Scaffold007 rebuild transcript 1378711 1379181 . + . gene_id "RvY_12318"; transcript_id "RvY_12318.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1378711 1379181 . + . gene_id "RvY_12318"; transcript_id "RvY_12318.1"; Scaffold007 rebuild transcript 1379583 1380835 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1379583 1380147 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.1"; Scaffold007 rebuild exon 1380250 1380403 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.1"; Scaffold007 rebuild exon 1380694 1380835 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.1"; Scaffold007 rebuild transcript 1379583 1380407 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1379583 1380147 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.2"; Scaffold007 rebuild exon 1380250 1380407 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.2"; Scaffold007 rebuild transcript 1379583 1380233 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1379583 1380233 . + . gene_id "RvY_12319"; transcript_id "RvY_12319.3"; Scaffold007 rebuild transcript 1381037 1382666 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; gene_name "DRG"; annotation "Developmentally-regulated GTP-binding protein 1"; Pfam "[FeoB_N] Ferrous iron transport protein B|[TGS]|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "Predicted GTPase [General function prediction only]"; similar_genes "DRG1_MOUSE(e-value:6.6e-163;bit-score:570.0)"; Scaffold007 rebuild exon 1381037 1381302 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; Scaffold007 rebuild exon 1381488 1381746 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; Scaffold007 rebuild exon 1381808 1382178 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; Scaffold007 rebuild exon 1382328 1382348 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; Scaffold007 rebuild exon 1382410 1382554 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; Scaffold007 rebuild exon 1382628 1382666 . - . gene_id "RvY_12320"; transcript_id "RvY_12320.1"; Scaffold007 rebuild transcript 1383798 1388615 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; annotation "hypothetical protein."; Pfam "[EIF4E-T] Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E"; Scaffold007 rebuild exon 1383798 1383861 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1384075 1384441 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1384704 1384996 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1385062 1385289 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1385599 1385982 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1386212 1386594 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1386956 1387352 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1387594 1387659 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1387765 1388015 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild exon 1388277 1388615 . + . gene_id "RvY_12321"; transcript_id "RvY_12321.1"; Scaffold007 rebuild transcript 1389611 1390147 . - . gene_id "RvY_12322"; transcript_id "RvY_12322.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1389611 1390147 . - . gene_id "RvY_12322"; transcript_id "RvY_12322.1"; Scaffold007 rebuild transcript 1391116 1393235 . + . gene_id "RvY_12323"; transcript_id "RvY_12323.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1391116 1391211 . + . gene_id "RvY_12323"; transcript_id "RvY_12323.1"; Scaffold007 rebuild exon 1392798 1393235 . + . gene_id "RvY_12323"; transcript_id "RvY_12323.1"; Scaffold007 rebuild transcript 1392770 1393621 . - . gene_id "RvY_12324"; transcript_id "RvY_12324.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1392770 1393621 . - . gene_id "RvY_12324"; transcript_id "RvY_12324.1"; Scaffold007 rebuild transcript 1394677 1396027 . + . gene_id "RvY_12325"; transcript_id "RvY_12325.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1394677 1394792 . + . gene_id "RvY_12325"; transcript_id "RvY_12325.1"; Scaffold007 rebuild exon 1395724 1396027 . + . gene_id "RvY_12325"; transcript_id "RvY_12325.1"; Scaffold007 rebuild transcript 1396154 1396702 . - . gene_id "RvY_12326"; transcript_id "RvY_12326.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1396154 1396702 . - . gene_id "RvY_12326"; transcript_id "RvY_12326.1"; Scaffold007 rebuild transcript 1397373 1398014 . + . gene_id "RvY_12327"; transcript_id "RvY_12327.1"; annotation "hypothetical protein."; Pfam "[PC4] Transcriptional Coactivator p15 (PC4)"; Scaffold007 rebuild exon 1397373 1398014 . + . gene_id "RvY_12327"; transcript_id "RvY_12327.1"; Scaffold007 rebuild transcript 1398223 1401027 . - . gene_id "RvY_12328"; transcript_id "RvY_12328.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1398223 1398787 . - . gene_id "RvY_12328"; transcript_id "RvY_12328.1"; Scaffold007 rebuild exon 1399195 1399814 . - . gene_id "RvY_12328"; transcript_id "RvY_12328.1"; Scaffold007 rebuild exon 1399888 1400109 . - . gene_id "RvY_12328"; transcript_id "RvY_12328.1"; Scaffold007 rebuild exon 1400255 1400763 . - . gene_id "RvY_12328"; transcript_id "RvY_12328.1"; Scaffold007 rebuild exon 1400973 1401027 . - . gene_id "RvY_12328"; transcript_id "RvY_12328.1"; Scaffold007 rebuild transcript 1401206 1401966 . - . gene_id "RvY_12329"; transcript_id "RvY_12329.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1401206 1401661 . - . gene_id "RvY_12329"; transcript_id "RvY_12329.1"; Scaffold007 rebuild exon 1401835 1401966 . - . gene_id "RvY_12329"; transcript_id "RvY_12329.1"; Scaffold007 rebuild transcript 1402361 1402588 . - . gene_id "RvY_12330"; transcript_id "RvY_12330.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1402361 1402588 . - . gene_id "RvY_12330"; transcript_id "RvY_12330.1"; Scaffold007 rebuild transcript 1402609 1403187 . - . gene_id "RvY_12331"; transcript_id "RvY_12331.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1402609 1403187 . - . gene_id "RvY_12331"; transcript_id "RvY_12331.1"; Scaffold007 rebuild transcript 1403299 1403685 . - . gene_id "RvY_12332"; transcript_id "RvY_12332.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1403299 1403481 . - . gene_id "RvY_12332"; transcript_id "RvY_12332.1"; Scaffold007 rebuild exon 1403533 1403685 . - . gene_id "RvY_12332"; transcript_id "RvY_12332.1"; Scaffold007 rebuild transcript 1403769 1404644 . - . gene_id "RvY_12333"; transcript_id "RvY_12333.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1403769 1404644 . - . gene_id "RvY_12333"; transcript_id "RvY_12333.1"; Scaffold007 rebuild transcript 1406109 1406297 . + . gene_id "RvY_12334"; transcript_id "RvY_12334.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1406109 1406297 . + . gene_id "RvY_12334"; transcript_id "RvY_12334.1"; Scaffold007 rebuild transcript 1406542 1407001 . + . gene_id "RvY_12335"; transcript_id "RvY_12335.1"; gene_name "TBP_TLF"; annotation "hypothetical protein."; Pfam "[TBP] Transcription factor TFIID (or TATA-binding protein, TBP)"; CDD "TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many equivalent positions, suggesting similar structure. However, TLFs contain distinct, conserved amino acids at several positions that distinguish them from TBP."; Scaffold007 rebuild exon 1406542 1406866 . + . gene_id "RvY_12335"; transcript_id "RvY_12335.1"; Scaffold007 rebuild exon 1406982 1407001 . + . gene_id "RvY_12335"; transcript_id "RvY_12335.1"; Scaffold007 rebuild transcript 1407043 1409121 . - . gene_id "RvY_12336"; transcript_id "RvY_12336.1"; annotation "hypothetical protein."; Pfam "[DNA_pol_B_2] DNA polymerase type B, organellar and viral"; Scaffold007 rebuild exon 1407043 1407386 . - . gene_id "RvY_12336"; transcript_id "RvY_12336.1"; Scaffold007 rebuild exon 1407456 1407738 . - . gene_id "RvY_12336"; transcript_id "RvY_12336.1"; Scaffold007 rebuild exon 1407898 1408116 . - . gene_id "RvY_12336"; transcript_id "RvY_12336.1"; Scaffold007 rebuild exon 1408378 1409121 . - . gene_id "RvY_12336"; transcript_id "RvY_12336.1"; Scaffold007 rebuild transcript 1409427 1410781 . - . gene_id "RvY_12337"; transcript_id "RvY_12337.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1409427 1409540 . - . gene_id "RvY_12337"; transcript_id "RvY_12337.1"; Scaffold007 rebuild exon 1409647 1410239 . - . gene_id "RvY_12337"; transcript_id "RvY_12337.1"; Scaffold007 rebuild exon 1410637 1410781 . - . gene_id "RvY_12337"; transcript_id "RvY_12337.1"; Scaffold007 rebuild transcript 1410998 1411198 . - . gene_id "RvY_12338"; transcript_id "RvY_12338.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1410998 1411198 . - . gene_id "RvY_12338"; transcript_id "RvY_12338.1"; Scaffold007 rebuild transcript 1411274 1411504 . - . gene_id "RvY_12339"; transcript_id "RvY_12339.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1411274 1411504 . - . gene_id "RvY_12339"; transcript_id "RvY_12339.1"; Scaffold007 rebuild transcript 1411855 1412529 . + . gene_id "RvY_12340"; transcript_id "RvY_12340.1"; annotation "hypothetical protein."; Pfam "[BIR] Inhibitor of Apoptosis domain"; Scaffold007 rebuild exon 1411855 1412253 . + . gene_id "RvY_12340"; transcript_id "RvY_12340.1"; Scaffold007 rebuild exon 1412335 1412529 . + . gene_id "RvY_12340"; transcript_id "RvY_12340.1"; Scaffold007 rebuild transcript 1412565 1412774 . + . gene_id "RvY_12341"; transcript_id "RvY_12341.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1412565 1412774 . + . gene_id "RvY_12341"; transcript_id "RvY_12341.1"; Scaffold007 rebuild transcript 1414318 1421527 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; gene_name "DENN"; annotation "putative DENN domain-containing protein 4C"; Pfam "[DENN] DENN (AEX-3) domain|[dDENN]"; CDD "Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity."; similar_genes "DEN4C_HUMAN(e-value:3.8e-38;bit-score:156.0)"; Scaffold007 rebuild exon 1414318 1414697 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1414761 1414881 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1415143 1415229 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1415299 1416399 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1416787 1418505 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1418672 1419248 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1419587 1419912 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1420188 1420514 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1420578 1421053 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild exon 1421218 1421527 . - . gene_id "RvY_12342"; transcript_id "RvY_12342.1"; Scaffold007 rebuild transcript 1422721 1424965 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1422721 1422798 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1422867 1423047 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1423255 1423430 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1423491 1423689 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1423797 1423933 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1424004 1424060 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1424157 1424392 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1424472 1424559 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild exon 1424813 1424965 . + . gene_id "RvY_12343"; transcript_id "RvY_12343.1"; Scaffold007 rebuild transcript 1426053 1426247 . - . gene_id "RvY_12344"; transcript_id "RvY_12344.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1426053 1426247 . - . gene_id "RvY_12344"; transcript_id "RvY_12344.1"; Scaffold007 rebuild transcript 1427183 1434837 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; gene_name "USP6_32"; annotation "putative Ubiquitin carboxyl-terminal hydrolase 6"; Pfam "[DUSP]|[efhand] EF hand|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase|[EF_hand_4] EF-hand domain"; CDD "Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11837"; similar_genes "UBP6_HUMAN(e-value:4.7e-49;bit-score:192.0)"; Scaffold007 rebuild exon 1427183 1427276 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1427545 1427964 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1428157 1428449 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1428580 1428774 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1428836 1429128 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1429189 1429456 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1429636 1429929 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1430131 1430460 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1430655 1431164 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1431292 1431488 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1431702 1432041 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1432421 1432611 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1432693 1432897 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1433092 1433283 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1433469 1433948 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1434436 1434528 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild exon 1434589 1434837 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.1"; Scaffold007 rebuild transcript 1427183 1434837 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; gene_name "USP6_32"; annotation "putative Ubiquitin carboxyl-terminal hydrolase 6"; Pfam "[DUSP]|[efhand] EF hand|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase|[EF_hand_4] EF-hand domain"; CDD "Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11837"; similar_genes "UBP6_HUMAN(e-value:4.7e-49;bit-score:192.0)"; Scaffold007 rebuild exon 1427183 1427276 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1427545 1427964 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1428157 1428449 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1428580 1428774 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1428836 1429128 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1429189 1429456 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1429639 1429929 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1430131 1430460 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1430655 1431164 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1431292 1431488 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1431702 1432041 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1432421 1432611 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1432693 1432897 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1433092 1433283 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1433469 1433948 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1434436 1434528 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild exon 1434589 1434837 . + . gene_id "RvY_12345"; transcript_id "RvY_12345.2"; Scaffold007 rebuild transcript 1436903 1437331 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1436903 1436986 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.1"; Scaffold007 rebuild exon 1437044 1437331 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.1"; Scaffold007 rebuild transcript 1436543 1436875 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1436543 1436875 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.2"; Scaffold007 rebuild transcript 1436646 1436963 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1436646 1436963 . - . gene_id "RvY_12346"; transcript_id "RvY_12346.3"; Scaffold007 rebuild transcript 1437350 1437871 . - . gene_id "RvY_12347"; transcript_id "RvY_12347.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1437350 1437415 . - . gene_id "RvY_12347"; transcript_id "RvY_12347.1"; Scaffold007 rebuild exon 1437529 1437706 . - . gene_id "RvY_12347"; transcript_id "RvY_12347.1"; Scaffold007 rebuild exon 1437768 1437871 . - . gene_id "RvY_12347"; transcript_id "RvY_12347.1"; Scaffold007 rebuild transcript 1438438 1439215 . - . gene_id "RvY_12348"; transcript_id "RvY_12348.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1438438 1438507 . - . gene_id "RvY_12348"; transcript_id "RvY_12348.1"; Scaffold007 rebuild exon 1438570 1438645 . - . gene_id "RvY_12348"; transcript_id "RvY_12348.1"; Scaffold007 rebuild exon 1438951 1439215 . - . gene_id "RvY_12348"; transcript_id "RvY_12348.1"; Scaffold007 rebuild transcript 1439651 1442867 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; gene_name "eIF-4A"; annotation "ATP-dependent RNA helicase eIF4A"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K03257"; similar_genes "IF4A_USTMA(e-value:5.0e-161;bit-score:564.0)"; Scaffold007 rebuild exon 1439651 1439673 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1440575 1440662 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1440730 1440862 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1440931 1441070 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1441285 1441450 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1441522 1441631 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1441726 1441869 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1442097 1442234 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1442315 1442484 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild exon 1442723 1442867 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.1"; Scaffold007 rebuild transcript 1439651 1442867 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; gene_name "eIF-4A"; annotation "ATP-dependent RNA helicase eIF4A"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K03257"; similar_genes "IF4A_USTMA(e-value:5.0e-161;bit-score:564.0)"; Scaffold007 rebuild exon 1439651 1439667 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1440575 1440662 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1440730 1440862 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1440931 1441070 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1441285 1441450 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1441522 1441631 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1441726 1441869 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1442097 1442234 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1442315 1442484 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild exon 1442723 1442867 . + . gene_id "RvY_12349"; transcript_id "RvY_12349.2"; Scaffold007 rebuild transcript 1443652 1445230 . - . gene_id "RvY_12350"; transcript_id "RvY_12350.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1443652 1444385 . - . gene_id "RvY_12350"; transcript_id "RvY_12350.1"; Scaffold007 rebuild exon 1444657 1445230 . - . gene_id "RvY_12350"; transcript_id "RvY_12350.1"; Scaffold007 rebuild transcript 1446286 1446924 . + . gene_id "RvY_12351"; transcript_id "RvY_12351.1"; annotation "hypothetical protein."; Pfam "[PC-Esterase] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"; Scaffold007 rebuild exon 1446286 1446455 . + . gene_id "RvY_12351"; transcript_id "RvY_12351.1"; Scaffold007 rebuild exon 1446525 1446924 . + . gene_id "RvY_12351"; transcript_id "RvY_12351.1"; Scaffold007 rebuild transcript 1447794 1449397 . - . gene_id "RvY_12352"; transcript_id "RvY_12352.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1447794 1448554 . - . gene_id "RvY_12352"; transcript_id "RvY_12352.1"; Scaffold007 rebuild exon 1448899 1449397 . - . gene_id "RvY_12352"; transcript_id "RvY_12352.1"; Scaffold007 rebuild transcript 1452138 1455915 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; gene_name "GIT2"; annotation "G protein-coupled receptor kinase interactor 2"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[GIT_SHD] Spa2 homology domain (SHD) of GIT|[ArfGap] Putative GTPase activating protein for Arf|[Ank_2] Ankyrin repeats (3 copies)|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)|[GIT1_C] G protein-coupled receptor kinase-interacting protein 1 C term"; KO "K12487"; similar_genes "GIT2_HUMAN(e-value:2.6e-24;bit-score:110.0)"; Scaffold007 rebuild exon 1452138 1452386 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1452664 1452874 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1452936 1453099 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1453253 1453986 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1454210 1454334 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1454405 1454591 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1454851 1455025 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1455099 1455335 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1455535 1455668 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild exon 1455846 1455915 . - . gene_id "RvY_12353"; transcript_id "RvY_12353.1"; Scaffold007 rebuild transcript 1456658 1456999 . + . gene_id "RvY_12354"; transcript_id "RvY_12354.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1456658 1456999 . + . gene_id "RvY_12354"; transcript_id "RvY_12354.1"; Scaffold007 rebuild transcript 1457009 1459288 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; gene_name "CaiB"; annotation "CaiB/baiF CoA-transferase family protein C7orf10"; Pfam "[CoA_transf_3] CoA-transferase family III"; CDD "Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]"; EC "EC2.-.-.-"; similar_genes "CG010_HUMAN(e-value:3.5e-79;bit-score:292.0)"; Scaffold007 rebuild exon 1457009 1457202 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1457346 1457419 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1457488 1457573 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1457645 1457695 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1457773 1457893 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1457986 1458077 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1458490 1458633 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild exon 1458707 1459288 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.1"; Scaffold007 rebuild transcript 1457009 1459288 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; gene_name "CaiB"; annotation "CaiB/baiF CoA-transferase family protein C7orf10"; Pfam "[CoA_transf_3] CoA-transferase family III"; CDD "Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]"; EC "EC2.-.-.-"; similar_genes "CG010_HUMAN(e-value:3.5e-79;bit-score:292.0)"; Scaffold007 rebuild exon 1457009 1457050 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1457114 1457202 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1457346 1457419 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1457488 1457573 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1457645 1457695 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1457773 1457893 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1457986 1458077 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1458490 1458633 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild exon 1458707 1459288 . + . gene_id "RvY_12355"; transcript_id "RvY_12355.2"; Scaffold007 rebuild transcript 1465740 1465949 . + . gene_id "RvY_12356"; transcript_id "RvY_12356.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1465740 1465949 . + . gene_id "RvY_12356"; transcript_id "RvY_12356.1"; Scaffold007 rebuild transcript 1465997 1466470 . + . gene_id "RvY_12357"; transcript_id "RvY_12357.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1465997 1466296 . + . gene_id "RvY_12357"; transcript_id "RvY_12357.1"; Scaffold007 rebuild exon 1466369 1466470 . + . gene_id "RvY_12357"; transcript_id "RvY_12357.1"; Scaffold007 rebuild transcript 1466559 1466783 . + . gene_id "RvY_12358"; transcript_id "RvY_12358.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1466559 1466783 . + . gene_id "RvY_12358"; transcript_id "RvY_12358.1"; Scaffold007 rebuild transcript 1468343 1468561 . - . gene_id "RvY_12359"; transcript_id "RvY_12359.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1468343 1468561 . - . gene_id "RvY_12359"; transcript_id "RvY_12359.1"; Scaffold007 rebuild transcript 1468579 1469432 . + . gene_id "RvY_12360"; transcript_id "RvY_12360.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1468579 1468792 . + . gene_id "RvY_12360"; transcript_id "RvY_12360.1"; Scaffold007 rebuild exon 1469227 1469432 . + . gene_id "RvY_12360"; transcript_id "RvY_12360.1"; Scaffold007 rebuild transcript 1470669 1472150 . - . gene_id "RvY_12361"; transcript_id "RvY_12361.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1470669 1470914 . - . gene_id "RvY_12361"; transcript_id "RvY_12361.1"; Scaffold007 rebuild exon 1472103 1472150 . - . gene_id "RvY_12361"; transcript_id "RvY_12361.1"; Scaffold007 rebuild transcript 1477161 1479507 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; gene_name "LRR_RI"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; CDD "Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1)."; Scaffold007 rebuild exon 1477161 1477684 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; Scaffold007 rebuild exon 1477785 1477980 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; Scaffold007 rebuild exon 1478078 1478161 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; Scaffold007 rebuild exon 1478461 1478720 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; Scaffold007 rebuild exon 1478838 1478982 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; Scaffold007 rebuild exon 1479283 1479507 . + . gene_id "RvY_12362"; transcript_id "RvY_12362.1"; Scaffold007 rebuild transcript 1479644 1481905 . - . gene_id "RvY_12363"; transcript_id "RvY_12363.1"; annotation "Cleft lip and palate transmembrane protein 1-like protein"; Pfam "[CLPTM1] Cleft lip and palate transmembrane protein 1 (CLPTM1)"; similar_genes "CLP1L_DANRE(e-value:4.8e-51;bit-score:199.0)"; Scaffold007 rebuild exon 1479644 1480200 . - . gene_id "RvY_12363"; transcript_id "RvY_12363.1"; Scaffold007 rebuild exon 1480533 1481164 . - . gene_id "RvY_12363"; transcript_id "RvY_12363.1"; Scaffold007 rebuild exon 1481388 1481905 . - . gene_id "RvY_12363"; transcript_id "RvY_12363.1"; Scaffold007 rebuild transcript 1485167 1487875 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold007 rebuild exon 1485167 1485309 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; Scaffold007 rebuild exon 1485373 1485784 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; Scaffold007 rebuild exon 1486642 1486722 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; Scaffold007 rebuild exon 1486787 1486845 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; Scaffold007 rebuild exon 1486919 1487108 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; Scaffold007 rebuild exon 1487444 1487875 . + . gene_id "RvY_12364"; transcript_id "RvY_12364.1"; Scaffold007 rebuild transcript 1488239 1489716 . + . gene_id "RvY_12365"; transcript_id "RvY_12365.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1488239 1488532 . + . gene_id "RvY_12365"; transcript_id "RvY_12365.1"; Scaffold007 rebuild exon 1489609 1489716 . + . gene_id "RvY_12365"; transcript_id "RvY_12365.1"; Scaffold007 rebuild transcript 1489834 1491470 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.1"; gene_name "TBP_TLF"; annotation "hypothetical protein."; Pfam "[TBP] Transcription factor TFIID (or TATA-binding protein, TBP)"; CDD "TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many equivalent positions, suggesting similar structure. However, TLFs contain distinct, conserved amino acids at several positions that distinguish them from TBP."; Scaffold007 rebuild exon 1489834 1490584 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.1"; Scaffold007 rebuild exon 1490818 1491470 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.1"; Scaffold007 rebuild transcript 1489834 1491470 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.2"; gene_name "TBP_TLF"; annotation "hypothetical protein."; Pfam "[TBP] Transcription factor TFIID (or TATA-binding protein, TBP)"; CDD "TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many equivalent positions, suggesting similar structure. However, TLFs contain distinct, conserved amino acids at several positions that distinguish them from TBP."; Scaffold007 rebuild exon 1489834 1489891 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.2"; Scaffold007 rebuild exon 1489946 1490584 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.2"; Scaffold007 rebuild exon 1490818 1491470 . + . gene_id "RvY_12366"; transcript_id "RvY_12366.2"; Scaffold007 rebuild transcript 1492127 1501646 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains."; Scaffold007 rebuild exon 1492127 1492330 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1492411 1492995 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1493110 1493631 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1493708 1494177 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1494251 1494725 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1494807 1494997 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1495075 1495192 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1495282 1495407 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1495477 1495650 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1495745 1496018 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1496441 1496482 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1497549 1497598 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1497790 1498118 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1499875 1499998 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1500066 1500312 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1500491 1500593 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1500670 1500856 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1501049 1501202 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild exon 1501402 1501646 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.1"; Scaffold007 rebuild transcript 1492127 1498002 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains."; Scaffold007 rebuild exon 1492127 1492330 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1492411 1492995 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1493110 1493631 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1493708 1494177 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1494251 1494725 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1494807 1494997 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1495075 1495192 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1495282 1495407 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1495477 1495650 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1495745 1496018 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1496441 1496482 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1496616 1496711 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1497549 1497598 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild exon 1497790 1498002 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.2"; Scaffold007 rebuild transcript 1494144 1501646 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; gene_name "RhoGEF"; annotation "hypothetical protein."; Pfam "[RhoGEF]"; CDD "Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains."; Scaffold007 rebuild exon 1494144 1494725 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1494807 1494997 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1495075 1495192 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1495282 1495407 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1495477 1495650 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1495745 1496018 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1496441 1496482 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1497549 1497598 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1497790 1498118 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1499875 1499998 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1500066 1500312 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1500491 1500593 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1500670 1500856 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1501049 1501202 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild exon 1501402 1501646 . - . gene_id "RvY_12367"; transcript_id "RvY_12367.3"; Scaffold007 rebuild transcript 1502084 1502479 . + . gene_id "RvY_12368"; transcript_id "RvY_12368.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1502084 1502479 . + . gene_id "RvY_12368"; transcript_id "RvY_12368.1"; Scaffold007 rebuild transcript 1503085 1506120 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; gene_name "SMR"; annotation "hypothetical protein."; Pfam "[Smr]"; CDD "Small MutS-related domain."; Scaffold007 rebuild exon 1503085 1503127 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1503293 1503374 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1503597 1503945 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1504078 1504363 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1504433 1504543 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1504612 1504739 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1504808 1504902 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1504973 1505069 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1505145 1505337 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1505409 1505467 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1505627 1505687 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1505767 1505980 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild exon 1506048 1506120 . + . gene_id "RvY_12369"; transcript_id "RvY_12369.1"; Scaffold007 rebuild transcript 1506922 1508947 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; gene_name "eEF-1A"; annotation "Elongation factor 1-alpha"; Pfam "[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU_D3] Elongation factor Tu C-terminal domain|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "elongation factor 1 alpha; Provisional"; EC "EC3.6.5.3"; KO "K03231"; similar_genes "EF1A_BOMMO(e-value:1.7e-233;bit-score:805.0)"; Scaffold007 rebuild exon 1506922 1507017 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1507085 1507167 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1507251 1507458 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1507554 1507730 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1507804 1508038 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1508114 1508382 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1508467 1508564 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1508629 1508781 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild exon 1508875 1508947 . - . gene_id "RvY_12370"; transcript_id "RvY_12370.1"; Scaffold007 rebuild transcript 1509936 1510415 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1509936 1510167 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.1"; Scaffold007 rebuild exon 1510270 1510415 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.1"; Scaffold007 rebuild transcript 1509936 1510415 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1509936 1510158 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.2"; Scaffold007 rebuild exon 1510270 1510415 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.2"; Scaffold007 rebuild transcript 1510273 1510620 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1510273 1510620 . + . gene_id "RvY_12371"; transcript_id "RvY_12371.3"; Scaffold007 rebuild transcript 1510406 1513085 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction|[PMP22_Claudin] PMP-22/EMP/MP20/Claudin family"; Scaffold007 rebuild exon 1510406 1510598 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; Scaffold007 rebuild exon 1510781 1510997 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; Scaffold007 rebuild exon 1511062 1511142 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; Scaffold007 rebuild exon 1511254 1511300 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; Scaffold007 rebuild exon 1511525 1511625 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; Scaffold007 rebuild exon 1512693 1513085 . - . gene_id "RvY_12372"; transcript_id "RvY_12372.1"; Scaffold007 rebuild transcript 1510864 1511415 . + . gene_id "RvY_12373"; transcript_id "RvY_12373.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1510864 1511415 . + . gene_id "RvY_12373"; transcript_id "RvY_12373.1"; Scaffold007 rebuild transcript 1510864 1511512 . + . gene_id "RvY_12373"; transcript_id "RvY_12373.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1510864 1511236 . + . gene_id "RvY_12373"; transcript_id "RvY_12373.2"; Scaffold007 rebuild exon 1511499 1511512 . + . gene_id "RvY_12373"; transcript_id "RvY_12373.2"; Scaffold007 rebuild transcript 1515654 1517092 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1515654 1515736 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.1"; Scaffold007 rebuild exon 1515853 1515982 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.1"; Scaffold007 rebuild exon 1516148 1516243 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.1"; Scaffold007 rebuild exon 1516740 1516920 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.1"; Scaffold007 rebuild exon 1517037 1517092 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.1"; Scaffold007 rebuild transcript 1515654 1516530 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1515654 1515736 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.2"; Scaffold007 rebuild exon 1515853 1515982 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.2"; Scaffold007 rebuild exon 1516148 1516243 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.2"; Scaffold007 rebuild exon 1516351 1516530 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.2"; Scaffold007 rebuild transcript 1515654 1516770 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1515654 1515736 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.3"; Scaffold007 rebuild exon 1515853 1515982 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.3"; Scaffold007 rebuild exon 1516148 1516243 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.3"; Scaffold007 rebuild exon 1516351 1516493 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.3"; Scaffold007 rebuild exon 1516740 1516770 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.3"; Scaffold007 rebuild transcript 1515654 1523781 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.4"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1515654 1515736 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.4"; Scaffold007 rebuild exon 1515853 1515982 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.4"; Scaffold007 rebuild exon 1516148 1516243 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.4"; Scaffold007 rebuild exon 1523713 1523781 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.4"; Scaffold007 rebuild transcript 1516783 1517228 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.5"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1516783 1516920 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.5"; Scaffold007 rebuild exon 1517037 1517228 . + . gene_id "RvY_12374"; transcript_id "RvY_12374.5"; Scaffold007 rebuild transcript 1524017 1526272 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; gene_name "DWB"; annotation "hypothetical protein."; Pfam "[MH2]"; CDD "Domain B in dwarfin family proteins."; Scaffold007 rebuild exon 1524017 1524286 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1524381 1524611 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1524737 1524901 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1524973 1525186 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1525288 1525445 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1525533 1525740 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1525807 1526049 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild exon 1526127 1526272 . + . gene_id "RvY_12375"; transcript_id "RvY_12375.1"; Scaffold007 rebuild transcript 1527020 1531449 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; gene_name "UBE3C"; annotation "ubiquitin-protein ligase E3 C [EC:6.3.2.19]"; Pfam "[HECT] HECT-domain (ubiquitin-transferase)"; CDD "HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains."; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10589"; similar_genes "UBE3C_HUMAN(e-value:9.2e-14;bit-score:75.0)"; Scaffold007 rebuild exon 1527020 1527085 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1527346 1527399 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1527502 1527576 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1527749 1528762 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1528842 1529488 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1529566 1529760 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1529843 1530009 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1530137 1530585 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1530684 1530840 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1531067 1531197 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild exon 1531282 1531449 . + . gene_id "RvY_12376"; transcript_id "RvY_12376.1"; Scaffold007 rebuild transcript 1531765 1532082 . - . gene_id "RvY_12377"; transcript_id "RvY_12377.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1531765 1532082 . - . gene_id "RvY_12377"; transcript_id "RvY_12377.1"; Scaffold007 rebuild transcript 1532468 1536183 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; gene_name "TlyC"; annotation "Metal transporter CNNM4"; Pfam "[DUF21] Domain of unknown function DUF21|[CBS]"; CDD "Hemolysins and related proteins containing CBS domains [General function prediction only]"; similar_genes "CNNM4_RAT(e-value:3.5e-81;bit-score:299.0)"; Scaffold007 rebuild exon 1532468 1533066 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; Scaffold007 rebuild exon 1533431 1533901 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; Scaffold007 rebuild exon 1534199 1534375 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; Scaffold007 rebuild exon 1534442 1534730 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; Scaffold007 rebuild exon 1535002 1535480 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; Scaffold007 rebuild exon 1535784 1536183 . - . gene_id "RvY_12378"; transcript_id "RvY_12378.1"; Scaffold007 rebuild transcript 1537732 1542108 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold007 rebuild exon 1537732 1537888 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1537978 1538136 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1538355 1538478 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1538557 1538718 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1538810 1538987 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1539084 1539423 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1539486 1540171 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1540287 1540924 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1541064 1541707 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1541781 1541869 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild exon 1541947 1542108 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.1"; Scaffold007 rebuild transcript 1537732 1541063 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold007 rebuild exon 1537732 1537888 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1537978 1538136 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1538355 1538478 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1538557 1538718 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1538810 1538987 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1539084 1539423 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1539486 1540171 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1540287 1540924 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild exon 1541003 1541063 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.2"; Scaffold007 rebuild transcript 1537732 1541063 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold007 rebuild exon 1537732 1537888 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1537978 1538136 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1538355 1538478 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1538557 1538718 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1538810 1538987 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1539084 1539423 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1539486 1539667 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1539848 1540171 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1540287 1540924 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild exon 1541003 1541063 . + . gene_id "RvY_12379"; transcript_id "RvY_12379.3"; Scaffold007 rebuild transcript 1545206 1552326 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; gene_name "C2_1"; annotation "putative Regulating synaptic membrane exocytosis protein 4"; Pfam "[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; KO "K15297"; similar_genes "RIMS4_MOUSE(e-value:5.4e-33;bit-score:139.0)"; Scaffold007 rebuild exon 1545206 1545324 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1545405 1545528 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1545588 1545609 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1545698 1545737 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1545805 1545838 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1545972 1546026 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1546106 1546587 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1547129 1547659 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1547803 1548428 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1548591 1548762 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1548828 1549056 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1549435 1549629 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1549722 1549911 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1550055 1550355 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1550472 1550884 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1551007 1551254 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1551324 1551665 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1551752 1551930 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild exon 1552057 1552326 . + . gene_id "RvY_12380"; transcript_id "RvY_12380.1"; Scaffold007 rebuild transcript 1552589 1552882 . - . gene_id "RvY_12381"; transcript_id "RvY_12381.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1552589 1552882 . - . gene_id "RvY_12381"; transcript_id "RvY_12381.1"; Scaffold007 rebuild transcript 1553049 1554680 . - . gene_id "RvY_12382"; transcript_id "RvY_12382.1"; gene_name "ALG7"; annotation "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase"; Pfam "[Glycos_transf_4] Glycosyl transferase family 4"; CDD "UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities."; EC "EC2.7.8.15"; KO "K01001"; similar_genes "GPT_MOUSE(e-value:2.2e-93;bit-score:339.0)"; Scaffold007 rebuild exon 1553049 1553647 . - . gene_id "RvY_12382"; transcript_id "RvY_12382.1"; Scaffold007 rebuild exon 1553707 1553853 . - . gene_id "RvY_12382"; transcript_id "RvY_12382.1"; Scaffold007 rebuild exon 1553914 1554127 . - . gene_id "RvY_12382"; transcript_id "RvY_12382.1"; Scaffold007 rebuild exon 1554221 1554371 . - . gene_id "RvY_12382"; transcript_id "RvY_12382.1"; Scaffold007 rebuild exon 1554433 1554680 . - . gene_id "RvY_12382"; transcript_id "RvY_12382.1"; Scaffold007 rebuild transcript 1555414 1557902 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; annotation "hypothetical protein."; Pfam "[Troponin]"; Scaffold007 rebuild exon 1555414 1556058 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; Scaffold007 rebuild exon 1556215 1556361 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; Scaffold007 rebuild exon 1556430 1556516 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; Scaffold007 rebuild exon 1556602 1556767 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; Scaffold007 rebuild exon 1556909 1556932 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; Scaffold007 rebuild exon 1557874 1557902 . - . gene_id "RvY_12383"; transcript_id "RvY_12383.1"; Scaffold007 rebuild transcript 1559498 1561328 . + . gene_id "RvY_12384"; transcript_id "RvY_12384.1"; gene_name "eEF-1B"; annotation "putative Elongation factor 1-beta"; Pfam "[EF1_GNE] EF-1 guanine nucleotide exchange domain|[EF-1_beta_acid] Eukaryotic elongation factor 1 beta central acidic region"; KO "K03232"; similar_genes "EF1B_MOUSE(e-value:2.4e-50;bit-score:196.0)"; Scaffold007 rebuild exon 1559498 1559587 . + . gene_id "RvY_12384"; transcript_id "RvY_12384.1"; Scaffold007 rebuild exon 1560393 1560480 . + . gene_id "RvY_12384"; transcript_id "RvY_12384.1"; Scaffold007 rebuild exon 1560540 1560724 . + . gene_id "RvY_12384"; transcript_id "RvY_12384.1"; Scaffold007 rebuild exon 1560893 1561085 . + . gene_id "RvY_12384"; transcript_id "RvY_12384.1"; Scaffold007 rebuild exon 1561174 1561328 . + . gene_id "RvY_12384"; transcript_id "RvY_12384.1"; Scaffold007 rebuild transcript 1561871 1563165 . - . gene_id "RvY_12385"; transcript_id "RvY_12385.1"; gene_name "BRLZ"; annotation "hypothetical protein."; Pfam "[bZIP_1] bZIP transcription factor|[bZIP_2] Basic region leucine zipper|[Jun] Jun-like transcription factor"; CDD "basic region leucin zipper."; Scaffold007 rebuild exon 1561871 1562547 . - . gene_id "RvY_12385"; transcript_id "RvY_12385.1"; Scaffold007 rebuild exon 1562628 1563165 . - . gene_id "RvY_12385"; transcript_id "RvY_12385.1"; Scaffold007 rebuild transcript 1565041 1567804 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; gene_name "EH"; annotation "hypothetical protein."; Pfam "[efhand_3] Cytoskeletal-regulatory complex EF hand"; CDD "Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences."; Scaffold007 rebuild exon 1565041 1565458 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1565713 1565907 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1565974 1566037 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1566107 1566335 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1566395 1566475 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1566677 1566985 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1567082 1567249 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1567345 1567529 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild exon 1567594 1567804 . + . gene_id "RvY_12386"; transcript_id "RvY_12386.1"; Scaffold007 rebuild transcript 1569871 1570846 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.1"; annotation "hypothetical protein."; Pfam "[TGFb_propeptide] TGF-beta propeptide"; Scaffold007 rebuild exon 1569871 1570273 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.1"; Scaffold007 rebuild exon 1570481 1570672 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.1"; Scaffold007 rebuild exon 1570800 1570846 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.1"; Scaffold007 rebuild transcript 1570112 1570663 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.2"; annotation "hypothetical protein."; Pfam "[TGFb_propeptide] TGF-beta propeptide"; Scaffold007 rebuild exon 1570112 1570273 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.2"; Scaffold007 rebuild exon 1570481 1570663 . + . gene_id "RvY_12387"; transcript_id "RvY_12387.2"; Scaffold007 rebuild transcript 1571093 1571569 . + . gene_id "RvY_12388"; transcript_id "RvY_12388.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1571093 1571241 . + . gene_id "RvY_12388"; transcript_id "RvY_12388.1"; Scaffold007 rebuild exon 1571308 1571569 . + . gene_id "RvY_12388"; transcript_id "RvY_12388.1"; Scaffold007 rebuild transcript 1572341 1573408 . + . gene_id "RvY_12389"; transcript_id "RvY_12389.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1572341 1573408 . + . gene_id "RvY_12389"; transcript_id "RvY_12389.1"; Scaffold007 rebuild transcript 1573651 1576132 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; gene_name "COG1078"; annotation "hypothetical protein."; Pfam "[HD]"; CDD "HD superfamily phosphohydrolases [General function prediction only]"; EC "EC3.1.4.-"; similar_genes "SAMH1_XENLA(e-value:9.4e-16;bit-score:81.0)"; Scaffold007 rebuild exon 1573651 1573878 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1573981 1574124 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1574193 1574378 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1574445 1574810 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1574874 1574988 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1575048 1575097 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1575177 1575344 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1575401 1575471 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1575637 1575752 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1575818 1575978 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild exon 1576055 1576132 . - . gene_id "RvY_12390"; transcript_id "RvY_12390.1"; Scaffold007 rebuild transcript 1576647 1577532 . + . gene_id "RvY_12391"; transcript_id "RvY_12391.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1576647 1576700 . + . gene_id "RvY_12391"; transcript_id "RvY_12391.1"; Scaffold007 rebuild exon 1577377 1577532 . + . gene_id "RvY_12391"; transcript_id "RvY_12391.1"; Scaffold007 rebuild transcript 1578597 1578902 . + . gene_id "RvY_12392"; transcript_id "RvY_12392.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1578597 1578902 . + . gene_id "RvY_12392"; transcript_id "RvY_12392.1"; Scaffold007 rebuild transcript 1579099 1581569 . + . gene_id "RvY_12393"; transcript_id "RvY_12393.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1579099 1579520 . + . gene_id "RvY_12393"; transcript_id "RvY_12393.1"; Scaffold007 rebuild exon 1580528 1580711 . + . gene_id "RvY_12393"; transcript_id "RvY_12393.1"; Scaffold007 rebuild exon 1580988 1581452 . + . gene_id "RvY_12393"; transcript_id "RvY_12393.1"; Scaffold007 rebuild exon 1581528 1581569 . + . gene_id "RvY_12393"; transcript_id "RvY_12393.1"; Scaffold007 rebuild transcript 1581639 1581890 . - . gene_id "RvY_12394"; transcript_id "RvY_12394.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1581639 1581890 . - . gene_id "RvY_12394"; transcript_id "RvY_12394.1"; Scaffold007 rebuild transcript 1584995 1585279 . - . gene_id "RvY_12395"; transcript_id "RvY_12395.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1584995 1585279 . - . gene_id "RvY_12395"; transcript_id "RvY_12395.1"; Scaffold007 rebuild transcript 1585463 1590326 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; gene_name "UhpC"; annotation "putative Sugar phosphate exchanger 2"; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "Sugar phosphate permease [Carbohydrate transport and metabolism]"; similar_genes "SPX2_BOVIN(e-value:2.8e-36;bit-score:150.0)"; Scaffold007 rebuild exon 1585463 1585520 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1586124 1586264 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1586461 1586593 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1586907 1587277 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1587435 1587577 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1587669 1587707 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1587791 1587994 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1588066 1588207 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1588284 1588325 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1589558 1589806 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1589875 1590085 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild exon 1590176 1590326 . + . gene_id "RvY_12396"; transcript_id "RvY_12396.1"; Scaffold007 rebuild transcript 1590836 1594840 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; gene_name "JAK2"; annotation "Janus kinase 2 [EC:2.7.10.2]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily."; EC "EC2.7.10.2"; KO "K04447"; similar_genes "BTK_MOUSE(e-value:2.4e-12;bit-score:70.0)"; Scaffold007 rebuild exon 1590836 1591306 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1591376 1591580 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1591650 1592062 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1592180 1592515 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1592584 1592858 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1592922 1593567 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1593622 1594008 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1594076 1594390 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild exon 1594466 1594840 . - . gene_id "RvY_12397"; transcript_id "RvY_12397.1"; Scaffold007 rebuild transcript 1595323 1596167 . + . gene_id "RvY_12398"; transcript_id "RvY_12398.1"; annotation "hypothetical protein."; similar_genes "CH082_BOVIN(e-value:8.2e-17;bit-score:85.0)"; Scaffold007 rebuild exon 1595323 1595460 . + . gene_id "RvY_12398"; transcript_id "RvY_12398.1"; Scaffold007 rebuild exon 1595682 1596167 . + . gene_id "RvY_12398"; transcript_id "RvY_12398.1"; Scaffold007 rebuild transcript 1596479 1596751 . + . gene_id "RvY_12399"; transcript_id "RvY_12399.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1596479 1596751 . + . gene_id "RvY_12399"; transcript_id "RvY_12399.1"; Scaffold007 rebuild transcript 1596939 1597461 . + . gene_id "RvY_12400"; transcript_id "RvY_12400.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1596939 1597035 . + . gene_id "RvY_12400"; transcript_id "RvY_12400.1"; Scaffold007 rebuild exon 1597358 1597461 . + . gene_id "RvY_12400"; transcript_id "RvY_12400.1"; Scaffold007 rebuild transcript 1597970 1610014 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; gene_name "SLIT2"; annotation "Slit homolog 2 protein"; Pfam "[LRRNT] Leucine rich repeat N-terminal domain|[Laminin_G_2] Laminin G domain|[hEGF] Human growth factor-like EGF|[LRR_5] Leucine rich repeats (6 copies)|[LRR_8] Leucine rich repeat|[EGF] EGF-like domain|[LRR_4] Leucine Rich repeats (2 copies)|[LRR_1] Leucine Rich Repeat|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain."; KO "K06839"; similar_genes "SLIT2_HUMAN(e-value:1.8e-63;bit-score:240.0)"; Scaffold007 rebuild exon 1597970 1598295 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1599702 1599773 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1599973 1600044 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1601959 1602030 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1604203 1604346 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1604414 1604485 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1604566 1604943 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1605034 1605105 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1605188 1605259 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1605364 1605435 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1605513 1605584 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1605678 1605749 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1605949 1606311 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1606375 1606449 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1606520 1606591 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1606664 1606810 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1606887 1607204 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1607274 1607558 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1607630 1607793 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1607857 1608390 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1608453 1608734 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1608802 1609212 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1609275 1609502 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild exon 1609698 1610014 . + . gene_id "RvY_12401"; transcript_id "RvY_12401.1"; Scaffold007 rebuild transcript 1598514 1598771 . - . gene_id "RvY_12402"; transcript_id "RvY_12402.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1598514 1598771 . - . gene_id "RvY_12402"; transcript_id "RvY_12402.1"; Scaffold007 rebuild transcript 1611444 1619847 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; annotation "hypothetical protein."; Pfam "[Med12-LCEWAV] Eukaryotic Mediator 12 subunit domain"; KO "K15162"; similar_genes "Y3534_DICDI(e-value:2.7e-13;bit-score:73.0)"; Scaffold007 rebuild exon 1611444 1612097 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1612299 1612675 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1612791 1613223 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1613319 1614063 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1614136 1614449 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1614523 1614889 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1614960 1615420 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1615515 1615928 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1616012 1616143 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1616218 1616447 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1616504 1617018 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1617092 1617311 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1617528 1618166 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1618231 1618786 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1618851 1619129 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild exon 1619287 1619847 . - . gene_id "RvY_12403"; transcript_id "RvY_12403.1"; Scaffold007 rebuild transcript 1620462 1622171 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.1"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold007 rebuild exon 1620462 1620777 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.1"; Scaffold007 rebuild exon 1620951 1621086 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.1"; Scaffold007 rebuild exon 1621153 1621248 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.1"; Scaffold007 rebuild exon 1621330 1621514 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.1"; Scaffold007 rebuild exon 1621699 1622171 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.1"; Scaffold007 rebuild transcript 1620462 1621540 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.2"; annotation "hypothetical protein."; Pfam "[Tudor-knot] RNA binding activity-knot of a chromodomain"; Scaffold007 rebuild exon 1620462 1620777 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.2"; Scaffold007 rebuild exon 1620951 1621086 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.2"; Scaffold007 rebuild exon 1621153 1621248 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.2"; Scaffold007 rebuild exon 1621330 1621540 . + . gene_id "RvY_12404"; transcript_id "RvY_12404.2"; Scaffold007 rebuild transcript 1621772 1622910 . - . gene_id "RvY_12405"; transcript_id "RvY_12405.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1621772 1621892 . - . gene_id "RvY_12405"; transcript_id "RvY_12405.1"; Scaffold007 rebuild exon 1621993 1622159 . - . gene_id "RvY_12405"; transcript_id "RvY_12405.1"; Scaffold007 rebuild exon 1622314 1622910 . - . gene_id "RvY_12405"; transcript_id "RvY_12405.1"; Scaffold007 rebuild transcript 1623536 1624333 . - . gene_id "RvY_12406"; transcript_id "RvY_12406.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1623536 1623692 . - . gene_id "RvY_12406"; transcript_id "RvY_12406.1"; Scaffold007 rebuild exon 1624059 1624333 . - . gene_id "RvY_12406"; transcript_id "RvY_12406.1"; Scaffold007 rebuild transcript 1624978 1627427 . + . gene_id "RvY_12407"; transcript_id "RvY_12407.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1624978 1625146 . + . gene_id "RvY_12407"; transcript_id "RvY_12407.1"; Scaffold007 rebuild exon 1627156 1627427 . + . gene_id "RvY_12407"; transcript_id "RvY_12407.1"; Scaffold007 rebuild transcript 1629392 1629901 . + . gene_id "RvY_12408"; transcript_id "RvY_12408.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1629392 1629901 . + . gene_id "RvY_12408"; transcript_id "RvY_12408.1"; Scaffold007 rebuild transcript 1630293 1631602 . + . gene_id "RvY_12409"; transcript_id "RvY_12409.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1630293 1630973 . + . gene_id "RvY_12409"; transcript_id "RvY_12409.1"; Scaffold007 rebuild exon 1631474 1631602 . + . gene_id "RvY_12409"; transcript_id "RvY_12409.1"; Scaffold007 rebuild transcript 1631777 1632795 . - . gene_id "RvY_12410"; transcript_id "RvY_12410.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1631777 1631837 . - . gene_id "RvY_12410"; transcript_id "RvY_12410.1"; Scaffold007 rebuild exon 1631914 1632083 . - . gene_id "RvY_12410"; transcript_id "RvY_12410.1"; Scaffold007 rebuild exon 1632200 1632329 . - . gene_id "RvY_12410"; transcript_id "RvY_12410.1"; Scaffold007 rebuild exon 1632389 1632795 . - . gene_id "RvY_12410"; transcript_id "RvY_12410.1"; Scaffold007 rebuild transcript 1633164 1633391 . + . gene_id "RvY_12411"; transcript_id "RvY_12411.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1633164 1633391 . + . gene_id "RvY_12411"; transcript_id "RvY_12411.1"; Scaffold007 rebuild transcript 1633776 1636549 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1633776 1633925 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1634004 1634142 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1634223 1634385 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1634472 1634586 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1634687 1634807 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1634882 1634952 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1635024 1635246 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1635316 1635637 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1635704 1635880 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1635948 1635998 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild exon 1636507 1636549 . - . gene_id "RvY_12412"; transcript_id "RvY_12412.1"; Scaffold007 rebuild transcript 1639475 1641481 . + . gene_id "RvY_12413"; transcript_id "RvY_12413.1"; gene_name "FADS3"; annotation "fatty acid desaturase 3 (delta-6 desaturase) [EC:1.14.19.-]"; Pfam "[FA_desaturase] Fatty acid desaturase|[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; CDD "The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase."; EC "EC1.14.19.-"; KO "K10225"; similar_genes "FAD5A_DICDI(e-value:8.0e-13;bit-score:72.0)"; Scaffold007 rebuild exon 1639475 1639780 . + . gene_id "RvY_12413"; transcript_id "RvY_12413.1"; Scaffold007 rebuild exon 1639859 1640351 . + . gene_id "RvY_12413"; transcript_id "RvY_12413.1"; Scaffold007 rebuild exon 1640616 1640878 . + . gene_id "RvY_12413"; transcript_id "RvY_12413.1"; Scaffold007 rebuild exon 1640945 1641142 . + . gene_id "RvY_12413"; transcript_id "RvY_12413.1"; Scaffold007 rebuild exon 1641218 1641481 . + . gene_id "RvY_12413"; transcript_id "RvY_12413.1"; Scaffold007 rebuild transcript 1643328 1645736 . + . gene_id "RvY_12414"; transcript_id "RvY_12414.1"; gene_name "FADS2"; annotation "fatty acid desaturase 2 (delta-6 desaturase) [EC:1.14.19.-]"; Pfam "[FA_desaturase] Fatty acid desaturase|[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; EC "EC1.14.19.-"; KO "K10226"; similar_genes "FAD5B_DICDI(e-value:6.0e-11;bit-score:65.0)"; Scaffold007 rebuild exon 1643328 1643741 . + . gene_id "RvY_12414"; transcript_id "RvY_12414.1"; Scaffold007 rebuild exon 1643943 1644641 . + . gene_id "RvY_12414"; transcript_id "RvY_12414.1"; Scaffold007 rebuild exon 1645152 1645421 . + . gene_id "RvY_12414"; transcript_id "RvY_12414.1"; Scaffold007 rebuild exon 1645485 1645736 . + . gene_id "RvY_12414"; transcript_id "RvY_12414.1"; Scaffold007 rebuild transcript 1645965 1646171 . - . gene_id "RvY_12415"; transcript_id "RvY_12415.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1645965 1646171 . - . gene_id "RvY_12415"; transcript_id "RvY_12415.1"; Scaffold007 rebuild transcript 1646606 1647004 . + . gene_id "RvY_12416"; transcript_id "RvY_12416.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1646606 1647004 . + . gene_id "RvY_12416"; transcript_id "RvY_12416.1"; Scaffold007 rebuild transcript 1647187 1651006 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; gene_name "SXM1"; annotation "hypothetical protein."; Pfam "[IBN_N] Importin-beta N-terminal domain"; CDD "Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]"; similar_genes "IPO8_HUMAN(e-value:2.6e-09;bit-score:60.0)"; Scaffold007 rebuild exon 1647187 1647270 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1647339 1647529 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1647601 1647754 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1647817 1648190 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1648256 1648430 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1648500 1648868 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1648969 1649378 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1649453 1649759 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1649831 1650321 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild exon 1650472 1651006 . - . gene_id "RvY_12417"; transcript_id "RvY_12417.1"; Scaffold007 rebuild transcript 1651766 1653348 . - . gene_id "RvY_12418"; transcript_id "RvY_12418.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; Scaffold007 rebuild exon 1651766 1651835 . - . gene_id "RvY_12418"; transcript_id "RvY_12418.1"; Scaffold007 rebuild exon 1651912 1652005 . - . gene_id "RvY_12418"; transcript_id "RvY_12418.1"; Scaffold007 rebuild exon 1652082 1652248 . - . gene_id "RvY_12418"; transcript_id "RvY_12418.1"; Scaffold007 rebuild exon 1652404 1652738 . - . gene_id "RvY_12418"; transcript_id "RvY_12418.1"; Scaffold007 rebuild exon 1652896 1653348 . - . gene_id "RvY_12418"; transcript_id "RvY_12418.1"; Scaffold007 rebuild transcript 1653632 1653949 . + . gene_id "RvY_12419"; transcript_id "RvY_12419.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1653632 1653949 . + . gene_id "RvY_12419"; transcript_id "RvY_12419.1"; Scaffold007 rebuild transcript 1655827 1657672 . + . gene_id "RvY_12420"; transcript_id "RvY_12420.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1655827 1655911 . + . gene_id "RvY_12420"; transcript_id "RvY_12420.1"; Scaffold007 rebuild exon 1656225 1656911 . + . gene_id "RvY_12420"; transcript_id "RvY_12420.1"; Scaffold007 rebuild exon 1656969 1657672 . + . gene_id "RvY_12420"; transcript_id "RvY_12420.1"; Scaffold007 rebuild transcript 1657976 1661396 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; annotation "hypothetical protein."; Pfam "[Annexin]"; Scaffold007 rebuild exon 1657976 1658101 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1658180 1658286 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1658370 1658699 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1658774 1658978 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1659063 1659157 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1659224 1659305 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1659374 1659646 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1659867 1659973 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1660084 1660159 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1660228 1660332 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1660453 1660524 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1660582 1660661 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1660741 1660774 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1660857 1660913 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1661005 1661213 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild exon 1661318 1661396 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.1"; Scaffold007 rebuild transcript 1658311 1661396 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; annotation "hypothetical protein."; Pfam "[Annexin]"; Scaffold007 rebuild exon 1658311 1658699 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1658774 1658978 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1659063 1659157 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1659224 1659305 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1659374 1659646 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1659867 1659973 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1660084 1660159 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1660228 1660332 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1660453 1660524 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1660582 1660661 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1660741 1660774 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1660857 1660913 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1661005 1661213 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild exon 1661318 1661396 . - . gene_id "RvY_12421"; transcript_id "RvY_12421.2"; Scaffold007 rebuild transcript 1661989 1663590 . - . gene_id "RvY_12422"; transcript_id "RvY_12422.1"; annotation "Diphthamide biosynthesis protein 1"; Pfam "[Diphthamide_syn] Putative diphthamide synthesis protein"; similar_genes "DPH1_CHICK(e-value:8.7e-59;bit-score:224.0)"; Scaffold007 rebuild exon 1661989 1662326 . - . gene_id "RvY_12422"; transcript_id "RvY_12422.1"; Scaffold007 rebuild exon 1662381 1662699 . - . gene_id "RvY_12422"; transcript_id "RvY_12422.1"; Scaffold007 rebuild exon 1662759 1663035 . - . gene_id "RvY_12422"; transcript_id "RvY_12422.1"; Scaffold007 rebuild exon 1663228 1663441 . - . gene_id "RvY_12422"; transcript_id "RvY_12422.1"; Scaffold007 rebuild exon 1663515 1663590 . - . gene_id "RvY_12422"; transcript_id "RvY_12422.1"; Scaffold007 rebuild transcript 1663956 1664922 . + . gene_id "RvY_12423"; transcript_id "RvY_12423.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1663956 1664179 . + . gene_id "RvY_12423"; transcript_id "RvY_12423.1"; Scaffold007 rebuild exon 1664251 1664303 . + . gene_id "RvY_12423"; transcript_id "RvY_12423.1"; Scaffold007 rebuild exon 1664378 1664611 . + . gene_id "RvY_12423"; transcript_id "RvY_12423.1"; Scaffold007 rebuild exon 1664684 1664922 . + . gene_id "RvY_12423"; transcript_id "RvY_12423.1"; Scaffold007 framed transcript 1665831 1668174 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; gene_name "SRP1"; annotation "hypothetical protein."; Pfam "[Arm] Armadillo/beta-catenin-like repeat|[HEAT_2] HEAT repeats|[HEAT_EZ] HEAT-like repeat"; CDD "Karyopherin (importin) alpha [Intracellular trafficking and secretion]"; Scaffold007 framed exon 1665831 1665935 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1666049 1666326 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1666415 1666507 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1666594 1666987 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1667055 1667195 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1667276 1667404 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1667466 1667573 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1667637 1667978 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 framed exon 1668064 1668174 . + . gene_id "RvY_12424"; transcript_id "RvY_12424.1"; Scaffold007 rebuild transcript 1668590 1668898 . - . gene_id "RvY_12425"; transcript_id "RvY_12425.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1668590 1668898 . - . gene_id "RvY_12425"; transcript_id "RvY_12425.2"; Scaffold007 rebuild transcript 1669128 1671181 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold007 rebuild exon 1669128 1669525 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; Scaffold007 rebuild exon 1669596 1669797 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; Scaffold007 rebuild exon 1669898 1670047 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; Scaffold007 rebuild exon 1670122 1670464 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; Scaffold007 rebuild exon 1670570 1670969 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; Scaffold007 rebuild exon 1671049 1671181 . - . gene_id "RvY_12426"; transcript_id "RvY_12426.1"; Scaffold007 rebuild transcript 1671351 1671863 . - . gene_id "RvY_12427"; transcript_id "RvY_12427.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1671351 1671863 . - . gene_id "RvY_12427"; transcript_id "RvY_12427.1"; Scaffold007 rebuild transcript 1672622 1675670 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1672622 1672755 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1672815 1672920 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1672986 1673039 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1673242 1673310 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1673391 1673610 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1673697 1674105 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1674191 1674628 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1674698 1674749 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1674885 1675124 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1675193 1675301 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild exon 1675378 1675670 . + . gene_id "RvY_12428"; transcript_id "RvY_12428.1"; Scaffold007 rebuild transcript 1676113 1676686 . - . gene_id "RvY_12429"; transcript_id "RvY_12429.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold007 rebuild exon 1676113 1676513 . - . gene_id "RvY_12429"; transcript_id "RvY_12429.1"; Scaffold007 rebuild exon 1676605 1676686 . - . gene_id "RvY_12429"; transcript_id "RvY_12429.1"; Scaffold007 rebuild transcript 1675878 1676201 . - . gene_id "RvY_12429"; transcript_id "RvY_12429.2"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold007 rebuild exon 1675878 1676201 . - . gene_id "RvY_12429"; transcript_id "RvY_12429.2"; Scaffold007 rebuild transcript 1676570 1676794 . + . gene_id "RvY_12430"; transcript_id "RvY_12430.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1676570 1676794 . + . gene_id "RvY_12430"; transcript_id "RvY_12430.1"; Scaffold007 rebuild transcript 1677426 1681014 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; gene_name "USP2_21"; annotation "ubiquitin carboxyl-terminal hydrolase 2/21 [EC:3.1.2.15]"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; EC "EC3.1.2.15"; KO "K11833"; similar_genes "UBP2_CHICK(e-value:7.3e-18;bit-score:88.0)"; Scaffold007 rebuild exon 1677426 1677809 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1678090 1678280 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1678364 1678542 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1678664 1678787 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1678855 1678972 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1679038 1679376 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1679451 1679851 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1679974 1680374 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild exon 1680521 1681014 . - . gene_id "RvY_12431"; transcript_id "RvY_12431.1"; Scaffold007 rebuild transcript 1682980 1683418 . + . gene_id "RvY_12432"; transcript_id "RvY_12432.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1682980 1683230 . + . gene_id "RvY_12432"; transcript_id "RvY_12432.1"; Scaffold007 rebuild exon 1683307 1683418 . + . gene_id "RvY_12432"; transcript_id "RvY_12432.1"; Scaffold007 rebuild transcript 1683044 1683449 . + . gene_id "RvY_12432"; transcript_id "RvY_12432.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1683044 1683230 . + . gene_id "RvY_12432"; transcript_id "RvY_12432.2"; Scaffold007 rebuild exon 1683307 1683449 . + . gene_id "RvY_12432"; transcript_id "RvY_12432.2"; Scaffold007 rebuild transcript 1683817 1685184 . + . gene_id "RvY_12433"; transcript_id "RvY_12433.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold007 rebuild exon 1683817 1684215 . + . gene_id "RvY_12433"; transcript_id "RvY_12433.1"; Scaffold007 rebuild exon 1684282 1684337 . + . gene_id "RvY_12433"; transcript_id "RvY_12433.1"; Scaffold007 rebuild exon 1684410 1685184 . + . gene_id "RvY_12433"; transcript_id "RvY_12433.1"; Scaffold007 rebuild transcript 1685534 1687300 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; gene_name "PPAP2"; annotation "phosphatidate phosphatase [EC:3.1.3.4]"; Pfam "[PAP2] PAP2 superfamily"; CDD "PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors."; EC "EC3.1.3.4"; KO "K01080"; similar_genes "LPP3_RAT(e-value:1.0e-06;bit-score:51.0)"; Scaffold007 rebuild exon 1685534 1685824 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild exon 1685901 1686033 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild exon 1686098 1686301 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild exon 1686366 1686547 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild exon 1686628 1686705 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild exon 1686776 1686846 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild exon 1686910 1687300 . - . gene_id "RvY_12434"; transcript_id "RvY_12434.1"; Scaffold007 rebuild transcript 1687831 1689949 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; gene_name "K01758"; annotation "Cystathionine gamma-lyase"; Pfam "[Cys_Met_Meta_PP] Cys/Met metabolism PLP-dependent enzyme|[Aminotran_5] Aminotransferase class-V|[Alum_res] Aluminium resistance protein|[Aminotran_1_2] Aminotransferase class I and II"; EC "EC4.4.1.1"; KO "K01758"; similar_genes "CGL_PIG(e-value:2.3e-80;bit-score:296.0)"; Scaffold007 rebuild exon 1687831 1688025 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1688104 1688169 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1688286 1688517 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1688584 1688860 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1688957 1689106 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1689173 1689268 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1689332 1689487 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild exon 1689718 1689949 . - . gene_id "RvY_12435"; transcript_id "RvY_12435.1"; Scaffold007 rebuild transcript 1691057 1696462 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; gene_name "SOS"; annotation "son of sevenless"; Pfam "[PH]|[RasGEF_N] RasGEF N-terminal motif|[RhoGEF]|[RasGEF]"; CDD "Guanine nucleotide exchange factor for Ras-like small GTPases."; KO "K03099"; similar_genes "SOS_DROME(e-value:1.2e-13;bit-score:74.0)"; Scaffold007 rebuild exon 1691057 1691131 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1691359 1691697 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1691759 1691839 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1691897 1692073 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1692146 1692514 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1692587 1692685 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1692765 1693038 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1693120 1693563 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1693627 1693894 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1693964 1694135 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1694216 1694326 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1694405 1694566 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1694643 1694822 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1694888 1695214 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1695279 1695395 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1695472 1695766 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild exon 1696032 1696462 . + . gene_id "RvY_12436"; transcript_id "RvY_12436.1"; Scaffold007 rebuild transcript 1697101 1699041 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; gene_name "CTSD"; annotation "Lysosomal aspartic protease"; Pfam "[Asp] Eukaryotic aspartyl protease"; CDD "Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two Scaffold007 rebuild exon 1697101 1697473 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1697544 1697747 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1697824 1697966 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698061 1698155 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698224 1698288 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698354 1698403 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698497 1698602 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698675 1698732 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698812 1698864 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild exon 1698938 1699041 . + . gene_id "RvY_12437"; transcript_id "RvY_12437.1"; Scaffold007 rebuild transcript 1698108 1698341 . - . gene_id "RvY_12438"; transcript_id "RvY_12438.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1698108 1698341 . - . gene_id "RvY_12438"; transcript_id "RvY_12438.1"; Scaffold007 rebuild transcript 1699928 1702071 . + . gene_id "RvY_12439"; transcript_id "RvY_12439.1"; gene_name "RCC1"; annotation "regulator of chromosome condensation"; Pfam "[RCC1_2] Regulator of chromosome condensation (RCC1) repeat|[RCC1] Regulator of chromosome condensation (RCC1) repeat"; CDD "Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]"; KO "K11493"; Scaffold007 rebuild exon 1699928 1700306 . + . gene_id "RvY_12439"; transcript_id "RvY_12439.1"; Scaffold007 rebuild exon 1700527 1700790 . + . gene_id "RvY_12439"; transcript_id "RvY_12439.1"; Scaffold007 rebuild exon 1700881 1701192 . + . gene_id "RvY_12439"; transcript_id "RvY_12439.1"; Scaffold007 rebuild exon 1701268 1701480 . + . gene_id "RvY_12439"; transcript_id "RvY_12439.1"; Scaffold007 rebuild exon 1701818 1702071 . + . gene_id "RvY_12439"; transcript_id "RvY_12439.1"; Scaffold007 rebuild transcript 1704186 1708484 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1704186 1704527 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1704626 1704726 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1704809 1705715 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1705792 1706036 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1706111 1706302 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1706394 1706507 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1706577 1707162 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1707289 1707424 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild exon 1708384 1708484 . - . gene_id "RvY_12440"; transcript_id "RvY_12440.1"; Scaffold007 rebuild transcript 1709682 1711028 . - . gene_id "RvY_12441"; transcript_id "RvY_12441.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1709682 1711028 . - . gene_id "RvY_12441"; transcript_id "RvY_12441.1"; Scaffold007 rebuild transcript 1711681 1712181 . - . gene_id "RvY_12442"; transcript_id "RvY_12442.1"; annotation "hypothetical protein."; Pfam "[Choline_transpo] Plasma-membrane choline transporter"; similar_genes "CTL4_RAT(e-value:8.5e-21;bit-score:98.0)"; Scaffold007 rebuild exon 1711681 1711847 . - . gene_id "RvY_12442"; transcript_id "RvY_12442.1"; Scaffold007 rebuild exon 1711923 1712007 . - . gene_id "RvY_12442"; transcript_id "RvY_12442.1"; Scaffold007 rebuild exon 1712095 1712181 . - . gene_id "RvY_12442"; transcript_id "RvY_12442.1"; Scaffold007 rebuild transcript 1712232 1715236 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; annotation "hypothetical protein."; Pfam "[Choline_transpo] Plasma-membrane choline transporter"; similar_genes "CTL4_PIG(e-value:7.9e-11;bit-score:65.0)"; Scaffold007 rebuild exon 1712232 1712337 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1713007 1713170 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1713238 1713427 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1713491 1713722 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1713779 1713891 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1713974 1714266 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1714341 1714557 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild exon 1715064 1715236 . - . gene_id "RvY_12443"; transcript_id "RvY_12443.1"; Scaffold007 rebuild transcript 1715638 1716568 . + . gene_id "RvY_12444"; transcript_id "RvY_12444.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1715638 1715689 . + . gene_id "RvY_12444"; transcript_id "RvY_12444.1"; Scaffold007 rebuild exon 1716020 1716319 . + . gene_id "RvY_12444"; transcript_id "RvY_12444.1"; Scaffold007 rebuild exon 1716387 1716568 . + . gene_id "RvY_12444"; transcript_id "RvY_12444.1"; Scaffold007 rebuild transcript 1717283 1718570 . + . gene_id "RvY_12445"; transcript_id "RvY_12445.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 1717283 1717991 . + . gene_id "RvY_12445"; transcript_id "RvY_12445.1"; Scaffold007 rebuild exon 1718112 1718350 . + . gene_id "RvY_12445"; transcript_id "RvY_12445.1"; Scaffold007 rebuild exon 1718415 1718570 . + . gene_id "RvY_12445"; transcript_id "RvY_12445.1"; Scaffold007 rebuild transcript 1719426 1721009 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "ANR29_DANRE(e-value:4.4e-22;bit-score:102.0)"; Scaffold007 rebuild exon 1719426 1719437 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; Scaffold007 rebuild exon 1719565 1719675 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; Scaffold007 rebuild exon 1719739 1719837 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; Scaffold007 rebuild exon 1719985 1720086 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; Scaffold007 rebuild exon 1720346 1720444 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; Scaffold007 rebuild exon 1720521 1721009 . + . gene_id "RvY_12446"; transcript_id "RvY_12446.1"; Scaffold007 rebuild transcript 1721427 1723061 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.1"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold007 rebuild exon 1721427 1721547 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.1"; Scaffold007 rebuild exon 1721659 1722183 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.1"; Scaffold007 rebuild exon 1722394 1723061 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.1"; Scaffold007 rebuild transcript 1721538 1723061 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.2"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold007 rebuild exon 1721538 1721547 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.2"; Scaffold007 rebuild exon 1721659 1722183 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.2"; Scaffold007 rebuild exon 1722394 1723061 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.2"; Scaffold007 rebuild transcript 1721703 1723061 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.3"; gene_name "S_TKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; Scaffold007 rebuild exon 1721703 1722183 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.3"; Scaffold007 rebuild exon 1722394 1723061 . + . gene_id "RvY_12447"; transcript_id "RvY_12447.3"; Scaffold007 rebuild transcript 1723569 1724372 . + . gene_id "RvY_12448"; transcript_id "RvY_12448.1"; product "LEA3"; annotation "LEA3 | hypothetical protein."; Pfam "[LEA_4] Late embryogenesis abundant protein|[YtxH] YtxH-like protein"; Scaffold007 rebuild exon 1723569 1723827 . + . gene_id "RvY_12448"; transcript_id "RvY_12448.1"; Scaffold007 rebuild exon 1723936 1724372 . + . gene_id "RvY_12448"; transcript_id "RvY_12448.1"; Scaffold007 rebuild transcript 1724652 1726007 . + . gene_id "RvY_12449"; transcript_id "RvY_12449.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1724652 1724747 . + . gene_id "RvY_12449"; transcript_id "RvY_12449.1"; Scaffold007 rebuild exon 1724870 1725254 . + . gene_id "RvY_12449"; transcript_id "RvY_12449.1"; Scaffold007 rebuild exon 1725346 1726007 . + . gene_id "RvY_12449"; transcript_id "RvY_12449.1"; Scaffold007 rebuild transcript 1726235 1726570 . + . gene_id "RvY_12450"; transcript_id "RvY_12450.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1726235 1726570 . + . gene_id "RvY_12450"; transcript_id "RvY_12450.1"; Scaffold007 rebuild transcript 1727644 1728196 . + . gene_id "RvY_12451"; transcript_id "RvY_12451.1"; gene_name "BACK"; annotation "hypothetical protein."; Pfam "[BACK] BTB And C-terminal Kelch"; CDD "BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues."; Scaffold007 rebuild exon 1727644 1727754 . + . gene_id "RvY_12451"; transcript_id "RvY_12451.1"; Scaffold007 rebuild exon 1727858 1728196 . + . gene_id "RvY_12451"; transcript_id "RvY_12451.1"; Scaffold007 rebuild transcript 1728223 1728800 . + . gene_id "RvY_12452"; transcript_id "RvY_12452.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1728223 1728438 . + . gene_id "RvY_12452"; transcript_id "RvY_12452.1"; Scaffold007 rebuild exon 1728567 1728800 . + . gene_id "RvY_12452"; transcript_id "RvY_12452.1"; Scaffold007 rebuild transcript 1728223 1728561 . + . gene_id "RvY_12452"; transcript_id "RvY_12452.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1728223 1728561 . + . gene_id "RvY_12452"; transcript_id "RvY_12452.2"; Scaffold007 rebuild transcript 1730812 1732131 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.1"; annotation "hypothetical protein."; Pfam "[Choline_transpo] Plasma-membrane choline transporter"; similar_genes "(2,3)CTL2_XENLA(e-value:1.3e-21;bit-score:101.0)"; Scaffold007 rebuild exon 1730812 1731038 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.1"; Scaffold007 rebuild exon 1731129 1731241 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.1"; Scaffold007 rebuild exon 1731311 1731768 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.1"; Scaffold007 rebuild exon 1731831 1731915 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.1"; Scaffold007 rebuild exon 1731998 1732131 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.1"; Scaffold007 rebuild transcript 1729106 1730140 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.2"; annotation "hypothetical protein."; Pfam "[Choline_transpo] Plasma-membrane choline transporter"; similar_genes "(2,3)CTL2_XENLA(e-value:1.3e-21;bit-score:101.0)"; Scaffold007 rebuild exon 1729106 1729117 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.2"; Scaffold007 rebuild exon 1729192 1729501 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.2"; Scaffold007 rebuild exon 1729566 1729709 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.2"; Scaffold007 rebuild exon 1729776 1729904 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.2"; Scaffold007 rebuild exon 1729968 1730140 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.2"; Scaffold007 rebuild transcript 1729772 1730828 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.3"; annotation "hypothetical protein."; Pfam "[Choline_transpo] Plasma-membrane choline transporter"; similar_genes "(2,3)CTL2_XENLA(e-value:1.3e-21;bit-score:101.0)"; Scaffold007 rebuild exon 1729772 1729904 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.3"; Scaffold007 rebuild exon 1729968 1730144 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.3"; Scaffold007 rebuild exon 1730230 1730294 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.3"; Scaffold007 rebuild exon 1730367 1730460 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.3"; Scaffold007 rebuild exon 1730560 1730828 . - . gene_id "RvY_12453"; transcript_id "RvY_12453.3"; Scaffold007 rebuild transcript 1733463 1733951 . - . gene_id "RvY_12454"; transcript_id "RvY_12454.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1733463 1733951 . - . gene_id "RvY_12454"; transcript_id "RvY_12454.1"; Scaffold007 rebuild transcript 1734950 1735309 . + . gene_id "RvY_12455"; transcript_id "RvY_12455.1"; annotation "hypothetical protein."; EC "EC3.6.1.-"; similar_genes "DED1_MAGGR(e-value:3.0e-10;bit-score:63.0)"; Scaffold007 rebuild exon 1734950 1735309 . + . gene_id "RvY_12455"; transcript_id "RvY_12455.1"; Scaffold007 rebuild transcript 1736356 1736616 . - . gene_id "RvY_12456"; transcript_id "RvY_12456.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1736356 1736616 . - . gene_id "RvY_12456"; transcript_id "RvY_12456.1"; Scaffold007 rebuild transcript 1742458 1742772 . - . gene_id "RvY_12457"; transcript_id "RvY_12457.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1742458 1742772 . - . gene_id "RvY_12457"; transcript_id "RvY_12457.1"; Scaffold007 rebuild transcript 1746665 1751976 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; gene_name "KIF26"; annotation "kinesin family member 26"; Pfam "[Kinesin] Kinesin motor domain"; KO "K10404"; similar_genes "KI26A_MOUSE(e-value:1.9e-20;bit-score:97.0)"; Scaffold007 rebuild exon 1746665 1746961 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1747868 1748174 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1749112 1749309 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1749438 1749662 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1749739 1749865 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1749995 1750157 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1750375 1750699 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1750765 1751073 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1751133 1751581 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild exon 1751650 1751976 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.1"; Scaffold007 rebuild transcript 1746665 1751976 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; gene_name "KIF26"; annotation "kinesin family member 26"; Pfam "[Kinesin] Kinesin motor domain"; KO "K10404"; similar_genes "KI26A_MOUSE(e-value:1.9e-20;bit-score:97.0)"; Scaffold007 rebuild exon 1746665 1746961 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1747868 1748174 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1749112 1749309 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1749438 1749662 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1749739 1749865 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1749995 1750157 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1750375 1750516 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1750589 1750699 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1750765 1751073 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1751133 1751581 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild exon 1751650 1751976 . + . gene_id "RvY_12458"; transcript_id "RvY_12458.2"; Scaffold007 rebuild transcript 1753353 1756165 . - . gene_id "RvY_12459"; transcript_id "RvY_12459.1"; gene_name "FST"; annotation "follistatin"; Pfam "[Kazal_2] Kazal-type serine protease inhibitor domain|[Kazal_1] Kazal-type serine protease inhibitor domain"; CDD "Kazal type serine protease inhibitors. Kazal type serine protease inhibitors and follistatin-like domains."; KO "K04661"; Scaffold007 rebuild exon 1753353 1753642 . - . gene_id "RvY_12459"; transcript_id "RvY_12459.1"; Scaffold007 rebuild exon 1753886 1754104 . - . gene_id "RvY_12459"; transcript_id "RvY_12459.1"; Scaffold007 rebuild exon 1754193 1754420 . - . gene_id "RvY_12459"; transcript_id "RvY_12459.1"; Scaffold007 rebuild exon 1754581 1754772 . - . gene_id "RvY_12459"; transcript_id "RvY_12459.1"; Scaffold007 rebuild exon 1756075 1756165 . - . gene_id "RvY_12459"; transcript_id "RvY_12459.1"; Scaffold007 rebuild transcript 1756358 1756549 . + . gene_id "RvY_12460"; transcript_id "RvY_12460.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1756358 1756549 . + . gene_id "RvY_12460"; transcript_id "RvY_12460.1"; Scaffold007 rebuild transcript 1758099 1759943 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; gene_name "CELA2"; annotation "pancreatic elastase II [EC:3.4.21.71]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold007 rebuild exon 1758099 1758186 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild exon 1758244 1758332 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild exon 1758493 1758656 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild exon 1758729 1758985 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild exon 1759072 1759213 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild exon 1759315 1759404 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild exon 1759694 1759943 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.1"; Scaffold007 rebuild transcript 1758099 1759943 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; gene_name "CELA2"; annotation "pancreatic elastase II [EC:3.4.21.71]"; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold007 rebuild exon 1758099 1758186 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1758244 1758332 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1758493 1758656 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1758729 1758985 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1759072 1759213 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1759315 1759404 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1759694 1759818 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild exon 1759918 1759943 . - . gene_id "RvY_12461"; transcript_id "RvY_12461.2"; Scaffold007 rebuild transcript 1760909 1761295 . + . gene_id "RvY_12462"; transcript_id "RvY_12462.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1760909 1761295 . + . gene_id "RvY_12462"; transcript_id "RvY_12462.1"; Scaffold007 rebuild transcript 1761693 1761989 . + . gene_id "RvY_12463"; transcript_id "RvY_12463.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1761693 1761989 . + . gene_id "RvY_12463"; transcript_id "RvY_12463.1"; Scaffold007 rebuild transcript 1762669 1763013 . + . gene_id "RvY_12464"; transcript_id "RvY_12464.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1762669 1763013 . + . gene_id "RvY_12464"; transcript_id "RvY_12464.1"; Scaffold007 rebuild transcript 1764498 1766489 . + . gene_id "RvY_12465"; transcript_id "RvY_12465.1"; gene_name "FRQ1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "CSEN_RAT(e-value:8.8e-08;bit-score:55.0)"; Scaffold007 rebuild exon 1764498 1764549 . + . gene_id "RvY_12465"; transcript_id "RvY_12465.1"; Scaffold007 rebuild exon 1765041 1765238 . + . gene_id "RvY_12465"; transcript_id "RvY_12465.1"; Scaffold007 rebuild exon 1765428 1765714 . + . gene_id "RvY_12465"; transcript_id "RvY_12465.1"; Scaffold007 rebuild exon 1765994 1766056 . + . gene_id "RvY_12465"; transcript_id "RvY_12465.1"; Scaffold007 rebuild exon 1766397 1766489 . + . gene_id "RvY_12465"; transcript_id "RvY_12465.1"; Scaffold007 rebuild transcript 1766608 1767893 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; gene_name "FRQ1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|(1)[EF_hand_3] EF hand|(1)[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "KCIP4_BOVIN(e-value:1.3e-06;bit-score:51.0)"; Scaffold007 rebuild exon 1766608 1766643 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; Scaffold007 rebuild exon 1766750 1766812 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; Scaffold007 rebuild exon 1766876 1767037 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; Scaffold007 rebuild exon 1767117 1767292 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; Scaffold007 rebuild exon 1767372 1767659 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; Scaffold007 rebuild exon 1767845 1767893 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.1"; Scaffold007 rebuild transcript 1766861 1767893 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.2"; gene_name "FRQ1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|(1)[EF_hand_3] EF hand|(1)[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; similar_genes "KCIP4_BOVIN(e-value:1.3e-06;bit-score:51.0)"; Scaffold007 rebuild exon 1766861 1767037 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.2"; Scaffold007 rebuild exon 1767117 1767292 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.2"; Scaffold007 rebuild exon 1767372 1767659 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.2"; Scaffold007 rebuild exon 1767845 1767893 . - . gene_id "RvY_12466"; transcript_id "RvY_12466.2"; Scaffold007 rebuild transcript 1768706 1769170 . - . gene_id "RvY_12467"; transcript_id "RvY_12467.1"; annotation "hypothetical protein."; similar_genes "K22E_RAT(e-value:4.5e-09;bit-score:59.0)"; Scaffold007 rebuild exon 1768706 1769170 . - . gene_id "RvY_12467"; transcript_id "RvY_12467.1"; Scaffold007 rebuild transcript 1769643 1769990 . + . gene_id "RvY_12468"; transcript_id "RvY_12468.1"; annotation "hypothetical protein."; similar_genes "GRP1_ARATH(e-value:4.0e-10;bit-score:63.0)"; Scaffold007 rebuild exon 1769643 1769990 . + . gene_id "RvY_12468"; transcript_id "RvY_12468.1"; Scaffold007 rebuild transcript 1770345 1774141 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1770345 1770559 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1770640 1770780 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1770845 1771171 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1771238 1771483 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1771551 1771889 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1771973 1772117 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1772189 1772274 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1772338 1772490 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1772550 1773158 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1773229 1773646 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild exon 1773911 1774141 . - . gene_id "RvY_12469"; transcript_id "RvY_12469.1"; Scaffold007 rebuild transcript 1776167 1777223 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.1"; annotation "(1)hypothetical protein.(2)putative Muscle LIM protein 1"; Pfam "[LIM]"; similar_genes "(2)MLP1_DROME(e-value:8.3e-36;bit-score:148.0)"; Scaffold007 rebuild exon 1776167 1776209 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.1"; Scaffold007 rebuild exon 1776275 1776408 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.1"; Scaffold007 rebuild exon 1776749 1776866 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.1"; Scaffold007 rebuild exon 1776954 1777062 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.1"; Scaffold007 rebuild exon 1777178 1777223 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.1"; Scaffold007 rebuild transcript 1776048 1776863 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.2"; annotation "(1)hypothetical protein.(2)putative Muscle LIM protein 1"; Pfam "[LIM]"; similar_genes "(2)MLP1_DROME(e-value:8.3e-36;bit-score:148.0)"; Scaffold007 rebuild exon 1776048 1776075 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.2"; Scaffold007 rebuild exon 1776166 1776209 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.2"; Scaffold007 rebuild exon 1776275 1776408 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.2"; Scaffold007 rebuild exon 1776749 1776863 . - . gene_id "RvY_12470"; transcript_id "RvY_12470.2"; Scaffold007 rebuild transcript 1778283 1779116 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.1"; annotation "hypothetical protein."; Pfam "[zf-LITAF-like] LITAF-like zinc ribbon domain"; Scaffold007 rebuild exon 1778283 1778358 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.1"; Scaffold007 rebuild exon 1778521 1778646 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.1"; Scaffold007 rebuild exon 1778833 1779016 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.1"; Scaffold007 rebuild exon 1779080 1779116 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.1"; Scaffold007 rebuild transcript 1778829 1779116 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.2"; annotation "hypothetical protein."; Pfam "[zf-LITAF-like] LITAF-like zinc ribbon domain"; Scaffold007 rebuild exon 1778829 1779016 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.2"; Scaffold007 rebuild exon 1779080 1779116 . - . gene_id "RvY_12471"; transcript_id "RvY_12471.2"; Scaffold007 rebuild transcript 1779390 1780540 . + . gene_id "RvY_12472"; transcript_id "RvY_12472.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1779390 1779459 . + . gene_id "RvY_12472"; transcript_id "RvY_12472.1"; Scaffold007 rebuild exon 1780044 1780540 . + . gene_id "RvY_12472"; transcript_id "RvY_12472.1"; Scaffold007 rebuild transcript 1783100 1783795 . + . gene_id "RvY_12473"; transcript_id "RvY_12473.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 1783100 1783795 . + . gene_id "RvY_12473"; transcript_id "RvY_12473.1"; Scaffold007 rebuild transcript 1785245 1787586 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; gene_name "Pancreat_lipase_like"; annotation "hypothetical protein."; Pfam "[Lipase]"; CDD "Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold007 rebuild exon 1785245 1785384 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1785452 1785656 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1785751 1785808 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1785882 1786017 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1786100 1786176 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1786235 1786320 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1786388 1786482 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1786572 1786624 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1786700 1786777 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1786861 1786919 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1787000 1787262 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild exon 1787328 1787586 . + . gene_id "RvY_12474"; transcript_id "RvY_12474.1"; Scaffold007 rebuild transcript 1788048 1789007 . + . gene_id "RvY_12475"; transcript_id "RvY_12475.1"; annotation "hypothetical protein."; Pfam "[Death]"; Scaffold007 rebuild exon 1788048 1788389 . + . gene_id "RvY_12475"; transcript_id "RvY_12475.1"; Scaffold007 rebuild exon 1788621 1789007 . + . gene_id "RvY_12475"; transcript_id "RvY_12475.1"; Scaffold007 rebuild transcript 1792497 1794073 . - . gene_id "RvY_12476"; transcript_id "RvY_12476.1"; gene_name "SERPINA3"; annotation "serpin peptidase inhibitor, clade A, member 3"; Pfam "[Serpin] Serpin (serine protease inhibitor)"; CDD "SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia."; KO "K04525"; Scaffold007 rebuild exon 1792497 1792804 . - . gene_id "RvY_12476"; transcript_id "RvY_12476.1"; Scaffold007 rebuild exon 1792872 1793323 . - . gene_id "RvY_12476"; transcript_id "RvY_12476.1"; Scaffold007 rebuild exon 1793393 1793725 . - . gene_id "RvY_12476"; transcript_id "RvY_12476.1"; Scaffold007 rebuild exon 1793841 1794073 . - . gene_id "RvY_12476"; transcript_id "RvY_12476.1"; Scaffold007 rebuild transcript 1795628 1798419 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1795628 1795873 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; Scaffold007 rebuild exon 1796186 1796329 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; Scaffold007 rebuild exon 1796699 1797515 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; Scaffold007 rebuild exon 1797629 1797945 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; Scaffold007 rebuild exon 1797961 1798223 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; Scaffold007 rebuild exon 1798302 1798419 . - . gene_id "RvY_12477"; transcript_id "RvY_12477.1"; Scaffold007 rebuild transcript 1799195 1800044 . - . gene_id "RvY_12478"; transcript_id "RvY_12478.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1799195 1799605 . - . gene_id "RvY_12478"; transcript_id "RvY_12478.1"; Scaffold007 rebuild exon 1799763 1800044 . - . gene_id "RvY_12478"; transcript_id "RvY_12478.1"; Scaffold007 rebuild transcript 1800904 1801918 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1800904 1801686 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.1"; Scaffold007 rebuild exon 1801754 1801918 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.1"; Scaffold007 rebuild transcript 1801007 1801918 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1801007 1801395 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.2"; Scaffold007 rebuild exon 1801521 1801686 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.2"; Scaffold007 rebuild exon 1801754 1801918 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.2"; Scaffold007 rebuild transcript 1800904 1801610 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1800904 1801395 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.3"; Scaffold007 rebuild exon 1801521 1801610 . - . gene_id "RvY_12479"; transcript_id "RvY_12479.3"; Scaffold007 rebuild transcript 1802909 1804334 . + . gene_id "RvY_12480"; transcript_id "RvY_12480.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1802909 1803383 . + . gene_id "RvY_12480"; transcript_id "RvY_12480.1"; Scaffold007 rebuild exon 1803601 1804107 . + . gene_id "RvY_12480"; transcript_id "RvY_12480.1"; Scaffold007 rebuild exon 1804189 1804334 . + . gene_id "RvY_12480"; transcript_id "RvY_12480.1"; Scaffold007 rebuild transcript 1806285 1808037 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1806285 1806320 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild exon 1806418 1806652 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild exon 1806778 1806975 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild exon 1807073 1807234 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild exon 1807297 1807530 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild exon 1807608 1807757 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild exon 1807832 1808037 . + . gene_id "RvY_12481"; transcript_id "RvY_12481.1"; Scaffold007 rebuild transcript 1808326 1809163 . - . gene_id "RvY_12482"; transcript_id "RvY_12482.1"; annotation "hypothetical protein."; Pfam "[CBM_5_12] Carbohydrate binding domain"; Scaffold007 rebuild exon 1808326 1808813 . - . gene_id "RvY_12482"; transcript_id "RvY_12482.1"; Scaffold007 rebuild exon 1808959 1809163 . - . gene_id "RvY_12482"; transcript_id "RvY_12482.1"; Scaffold007 rebuild transcript 1809980 1810979 . - . gene_id "RvY_12483"; transcript_id "RvY_12483.1"; annotation "hypothetical protein."; Pfam "[CBM_5_12] Carbohydrate binding domain"; Scaffold007 rebuild exon 1809980 1810038 . - . gene_id "RvY_12483"; transcript_id "RvY_12483.1"; Scaffold007 rebuild exon 1810130 1810549 . - . gene_id "RvY_12483"; transcript_id "RvY_12483.1"; Scaffold007 rebuild exon 1810721 1810979 . - . gene_id "RvY_12483"; transcript_id "RvY_12483.1"; Scaffold007 rebuild transcript 1811688 1815534 . - . gene_id "RvY_12484"; transcript_id "RvY_12484.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor|[Trehalose_recp] Trehalose receptor"; Scaffold007 rebuild exon 1811688 1811918 . - . gene_id "RvY_12484"; transcript_id "RvY_12484.1"; Scaffold007 rebuild exon 1812821 1812979 . - . gene_id "RvY_12484"; transcript_id "RvY_12484.1"; Scaffold007 rebuild exon 1813960 1814501 . - . gene_id "RvY_12484"; transcript_id "RvY_12484.1"; Scaffold007 rebuild exon 1814576 1815005 . - . gene_id "RvY_12484"; transcript_id "RvY_12484.1"; Scaffold007 rebuild exon 1815190 1815534 . - . gene_id "RvY_12484"; transcript_id "RvY_12484.1"; Scaffold007 rebuild transcript 1818000 1818509 . - . gene_id "RvY_12485"; transcript_id "RvY_12485.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1818000 1818509 . - . gene_id "RvY_12485"; transcript_id "RvY_12485.1"; Scaffold007 rebuild transcript 1818331 1818561 . + . gene_id "RvY_12486"; transcript_id "RvY_12486.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1818331 1818561 . + . gene_id "RvY_12486"; transcript_id "RvY_12486.1"; Scaffold007 rebuild transcript 1820326 1820691 . + . gene_id "RvY_12487"; transcript_id "RvY_12487.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1820326 1820691 . + . gene_id "RvY_12487"; transcript_id "RvY_12487.1"; Scaffold007 rebuild transcript 1821258 1821902 . + . gene_id "RvY_12488"; transcript_id "RvY_12488.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1821258 1821902 . + . gene_id "RvY_12488"; transcript_id "RvY_12488.1"; Scaffold007 rebuild transcript 1822043 1826448 . + . gene_id "RvY_12489"; transcript_id "RvY_12489.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1822043 1822386 . + . gene_id "RvY_12489"; transcript_id "RvY_12489.1"; Scaffold007 rebuild exon 1822658 1823274 . + . gene_id "RvY_12489"; transcript_id "RvY_12489.1"; Scaffold007 rebuild exon 1823396 1825135 . + . gene_id "RvY_12489"; transcript_id "RvY_12489.1"; Scaffold007 rebuild exon 1825194 1825810 . + . gene_id "RvY_12489"; transcript_id "RvY_12489.1"; Scaffold007 rebuild exon 1825870 1826448 . + . gene_id "RvY_12489"; transcript_id "RvY_12489.1"; Scaffold007 rebuild transcript 1827237 1828878 . + . gene_id "RvY_12490"; transcript_id "RvY_12490.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold007 rebuild exon 1827237 1827493 . + . gene_id "RvY_12490"; transcript_id "RvY_12490.1"; Scaffold007 rebuild exon 1827573 1827713 . + . gene_id "RvY_12490"; transcript_id "RvY_12490.1"; Scaffold007 rebuild exon 1828047 1828878 . + . gene_id "RvY_12490"; transcript_id "RvY_12490.1"; Scaffold007 rebuild transcript 1829292 1829465 . - . gene_id "RvY_12491"; transcript_id "RvY_12491.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1829292 1829465 . - . gene_id "RvY_12491"; transcript_id "RvY_12491.1"; Scaffold007 rebuild transcript 1830514 1831745 . + . gene_id "RvY_12492"; transcript_id "RvY_12492.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1830514 1830721 . + . gene_id "RvY_12492"; transcript_id "RvY_12492.1"; Scaffold007 rebuild exon 1830870 1831384 . + . gene_id "RvY_12492"; transcript_id "RvY_12492.1"; Scaffold007 rebuild exon 1831563 1831745 . + . gene_id "RvY_12492"; transcript_id "RvY_12492.1"; Scaffold007 rebuild transcript 1832124 1832687 . + . gene_id "RvY_12493"; transcript_id "RvY_12493.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1832124 1832687 . + . gene_id "RvY_12493"; transcript_id "RvY_12493.1"; Scaffold007 rebuild transcript 1833635 1834980 . - . gene_id "RvY_12494"; transcript_id "RvY_12494.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1833635 1833686 . - . gene_id "RvY_12494"; transcript_id "RvY_12494.1"; Scaffold007 rebuild exon 1833869 1834165 . - . gene_id "RvY_12494"; transcript_id "RvY_12494.1"; Scaffold007 rebuild exon 1834913 1834980 . - . gene_id "RvY_12494"; transcript_id "RvY_12494.1"; Scaffold007 rebuild transcript 1835538 1836058 . - . gene_id "RvY_12495"; transcript_id "RvY_12495.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1835538 1835818 . - . gene_id "RvY_12495"; transcript_id "RvY_12495.1"; Scaffold007 rebuild exon 1835890 1836058 . - . gene_id "RvY_12495"; transcript_id "RvY_12495.1"; Scaffold007 rebuild transcript 1838111 1842464 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; EC "EC2.7.10.1"; similar_genes "FGFR1_HUMAN(e-value:4.0e-12;bit-score:69.0)"; Scaffold007 rebuild exon 1838111 1838224 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1838401 1838643 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1838877 1839102 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1839176 1839396 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1839467 1839879 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1839963 1840187 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1840434 1841633 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild exon 1841765 1842464 . - . gene_id "RvY_12496"; transcript_id "RvY_12496.1"; Scaffold007 rebuild transcript 1843997 1844341 . - . gene_id "RvY_12497"; transcript_id "RvY_12497.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1843997 1844341 . - . gene_id "RvY_12497"; transcript_id "RvY_12497.1"; Scaffold007 rebuild transcript 1845434 1847188 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.1"; annotation "hypothetical protein."; Pfam "[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold007 rebuild exon 1845434 1845764 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.1"; Scaffold007 rebuild exon 1845963 1847188 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.1"; Scaffold007 rebuild transcript 1846016 1847188 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.2"; annotation "hypothetical protein."; Pfam "[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold007 rebuild exon 1846016 1847188 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.2"; Scaffold007 rebuild transcript 1846331 1847531 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.3"; annotation "hypothetical protein."; Pfam "[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold007 rebuild exon 1846331 1847171 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.3"; Scaffold007 rebuild exon 1847263 1847531 . + . gene_id "RvY_12498"; transcript_id "RvY_12498.3"; Scaffold007 rebuild transcript 1849052 1849526 . + . gene_id "RvY_12499"; transcript_id "RvY_12499.1"; gene_name "PTKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers."; Scaffold007 rebuild exon 1849052 1849251 . + . gene_id "RvY_12499"; transcript_id "RvY_12499.1"; Scaffold007 rebuild exon 1849313 1849526 . + . gene_id "RvY_12499"; transcript_id "RvY_12499.1"; Scaffold007 rebuild transcript 1850577 1851949 . + . gene_id "RvY_12500"; transcript_id "RvY_12500.1"; gene_name "FABP3"; annotation "fatty acid-binding protein 3, muscle and heart"; Pfam "[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; KO "K08752"; Scaffold007 rebuild exon 1850577 1850763 . + . gene_id "RvY_12500"; transcript_id "RvY_12500.1"; Scaffold007 rebuild exon 1850826 1851001 . + . gene_id "RvY_12500"; transcript_id "RvY_12500.1"; Scaffold007 rebuild exon 1851701 1851811 . + . gene_id "RvY_12500"; transcript_id "RvY_12500.1"; Scaffold007 rebuild exon 1851899 1851949 . + . gene_id "RvY_12500"; transcript_id "RvY_12500.1"; Scaffold007 rebuild transcript 1853308 1854077 . - . gene_id "RvY_12501"; transcript_id "RvY_12501.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1853308 1853554 . - . gene_id "RvY_12501"; transcript_id "RvY_12501.1"; Scaffold007 rebuild exon 1853636 1853709 . - . gene_id "RvY_12501"; transcript_id "RvY_12501.1"; Scaffold007 rebuild exon 1853783 1853844 . - . gene_id "RvY_12501"; transcript_id "RvY_12501.1"; Scaffold007 rebuild exon 1853945 1854077 . - . gene_id "RvY_12501"; transcript_id "RvY_12501.1"; Scaffold007 rebuild transcript 1854512 1855177 . - . gene_id "RvY_12502"; transcript_id "RvY_12502.1"; annotation "hypothetical protein."; Pfam "[PLAT] PLAT/LH2 domain"; Scaffold007 rebuild exon 1854512 1854826 . - . gene_id "RvY_12502"; transcript_id "RvY_12502.1"; Scaffold007 rebuild exon 1854892 1854953 . - . gene_id "RvY_12502"; transcript_id "RvY_12502.1"; Scaffold007 rebuild exon 1855030 1855177 . - . gene_id "RvY_12502"; transcript_id "RvY_12502.1"; Scaffold007 rebuild transcript 1855586 1858273 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; gene_name "Pancreat_lipase_like"; annotation "hypothetical protein."; Pfam "[Lipase]|[Abhydrolase_6] Alpha/beta hydrolase family"; CDD "Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold007 rebuild exon 1855586 1855847 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1855914 1856046 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1856135 1856273 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1856340 1856476 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1856543 1856641 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1856703 1856772 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1857224 1857519 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1857585 1857844 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1857933 1858002 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild exon 1858072 1858273 . - . gene_id "RvY_12503"; transcript_id "RvY_12503.1"; Scaffold007 rebuild transcript 1859002 1861083 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; gene_name "Pancreat_lipase_like"; annotation "hypothetical protein."; Pfam "[Lipase]"; CDD "Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is ""interfacial activation,"" the process of becoming Scaffold007 rebuild exon 1859002 1859263 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild exon 1859342 1859604 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild exon 1859685 1859871 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild exon 1859947 1860059 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild exon 1860133 1860428 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild exon 1860520 1860846 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild exon 1860924 1861083 . - . gene_id "RvY_12504"; transcript_id "RvY_12504.1"; Scaffold007 rebuild transcript 1861849 1862259 . - . gene_id "RvY_12505"; transcript_id "RvY_12505.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1861849 1862041 . - . gene_id "RvY_12505"; transcript_id "RvY_12505.1"; Scaffold007 rebuild exon 1862141 1862259 . - . gene_id "RvY_12505"; transcript_id "RvY_12505.1"; Scaffold007 rebuild transcript 1862590 1863531 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1862590 1862643 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.1"; Scaffold007 rebuild exon 1862702 1862829 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.1"; Scaffold007 rebuild exon 1862937 1863122 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.1"; Scaffold007 rebuild exon 1863214 1863335 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.1"; Scaffold007 rebuild exon 1863425 1863531 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.1"; Scaffold007 rebuild transcript 1863047 1863775 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1863047 1863122 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.2"; Scaffold007 rebuild exon 1863214 1863335 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.2"; Scaffold007 rebuild exon 1863425 1863775 . + . gene_id "RvY_12506"; transcript_id "RvY_12506.2"; Scaffold007 rebuild transcript 1864426 1868200 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; gene_name "ggt"; annotation "gamma-glutamyltranspeptidase [EC:2.3.2.2]"; Pfam "[G_glu_transpept] Gamma-glutamyltranspeptidase"; EC "EC2.3.2.2"; KO "K00681"; similar_genes "GGT1_PIG(e-value:1.8e-10;bit-score:64.0)"; Scaffold007 rebuild exon 1864426 1864572 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1864847 1864960 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1865056 1865299 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1865403 1865596 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1865659 1865972 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1866222 1866566 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1866777 1867024 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1867194 1867421 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild exon 1867944 1868200 . - . gene_id "RvY_12507"; transcript_id "RvY_12507.1"; Scaffold007 rebuild transcript 1868064 1868225 . + . gene_id "RvY_12508"; transcript_id "RvY_12508.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1868064 1868225 . + . gene_id "RvY_12508"; transcript_id "RvY_12508.1"; Scaffold007 rebuild transcript 1869136 1870339 . - . gene_id "RvY_12509"; transcript_id "RvY_12509.1"; annotation "hypothetical protein."; Pfam "[PRA1] PRA1 family protein"; Scaffold007 rebuild exon 1869136 1869329 . - . gene_id "RvY_12509"; transcript_id "RvY_12509.1"; Scaffold007 rebuild exon 1869400 1869497 . - . gene_id "RvY_12509"; transcript_id "RvY_12509.1"; Scaffold007 rebuild exon 1869729 1869962 . - . gene_id "RvY_12509"; transcript_id "RvY_12509.1"; Scaffold007 rebuild exon 1870143 1870339 . - . gene_id "RvY_12509"; transcript_id "RvY_12509.1"; Scaffold007 rebuild transcript 1870741 1872206 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.1"; gene_name "(1)AMACR(2)CaiB"; annotation "(1)alpha-methylacyl-CoA racemase [EC:5.1.99.4](2)hypothetical protein."; Pfam "[CoA_transf_3] CoA-transferase family III"; CDD "Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]"; EC "EC5.1.99.4"; KO "(1)K01796"; similar_genes "AMACR_HUMAN(e-value:4.9e-19;bit-score:92.0)"; Scaffold007 rebuild exon 1870741 1870975 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.1"; Scaffold007 rebuild exon 1871166 1871484 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.1"; Scaffold007 rebuild exon 1871541 1871731 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.1"; Scaffold007 rebuild exon 1871803 1872206 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.1"; Scaffold007 rebuild transcript 1870741 1871512 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.2"; gene_name "(1)AMACR(2)CaiB"; annotation "(1)alpha-methylacyl-CoA racemase [EC:5.1.99.4](2)hypothetical protein."; Pfam "[CoA_transf_3] CoA-transferase family III"; CDD "Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]"; EC "EC5.1.99.4"; KO "(1)K01796"; similar_genes "AMACR_HUMAN(e-value:4.9e-19;bit-score:92.0)"; Scaffold007 rebuild exon 1870741 1870975 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.2"; Scaffold007 rebuild exon 1871166 1871512 . + . gene_id "RvY_12510"; transcript_id "RvY_12510.2"; Scaffold007 rebuild transcript 1872434 1872736 . - . gene_id "RvY_12511"; transcript_id "RvY_12511.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1872434 1872736 . - . gene_id "RvY_12511"; transcript_id "RvY_12511.1"; Scaffold007 rebuild transcript 1873171 1873673 . - . gene_id "RvY_12512"; transcript_id "RvY_12512.1"; annotation "hypothetical protein."; EC "(1)EC3.6.1.-"; similar_genes "(1)DHX9_MOUSE(e-value:5.9e-09;bit-score:59.0)"; Scaffold007 rebuild exon 1873171 1873436 . - . gene_id "RvY_12512"; transcript_id "RvY_12512.1"; Scaffold007 rebuild exon 1873577 1873673 . - . gene_id "RvY_12512"; transcript_id "RvY_12512.1"; Scaffold007 rebuild transcript 1873082 1873405 . - . gene_id "RvY_12512"; transcript_id "RvY_12512.2"; annotation "hypothetical protein."; EC "(1)EC3.6.1.-"; similar_genes "(1)DHX9_MOUSE(e-value:5.9e-09;bit-score:59.0)"; Scaffold007 rebuild exon 1873082 1873405 . - . gene_id "RvY_12512"; transcript_id "RvY_12512.2"; Scaffold007 rebuild transcript 1874139 1875686 . + . gene_id "RvY_12513"; transcript_id "RvY_12513.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1874139 1874168 . + . gene_id "RvY_12513"; transcript_id "RvY_12513.1"; Scaffold007 rebuild exon 1874512 1874874 . + . gene_id "RvY_12513"; transcript_id "RvY_12513.1"; Scaffold007 rebuild exon 1875129 1875686 . + . gene_id "RvY_12513"; transcript_id "RvY_12513.1"; Scaffold007 rebuild transcript 1875727 1879693 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1875727 1875880 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild exon 1876125 1876935 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild exon 1877067 1877394 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild exon 1877496 1877642 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild exon 1878361 1878510 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild exon 1878583 1879095 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild exon 1879157 1879693 . - . gene_id "RvY_12514"; transcript_id "RvY_12514.1"; Scaffold007 rebuild transcript 1881820 1882038 . + . gene_id "RvY_12515"; transcript_id "RvY_12515.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1881820 1882038 . + . gene_id "RvY_12515"; transcript_id "RvY_12515.1"; Scaffold007 rebuild transcript 1882074 1882712 . + . gene_id "RvY_12516"; transcript_id "RvY_12516.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1882074 1882712 . + . gene_id "RvY_12516"; transcript_id "RvY_12516.1"; Scaffold007 rebuild transcript 1883196 1883645 . + . gene_id "RvY_12517"; transcript_id "RvY_12517.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1883196 1883645 . + . gene_id "RvY_12517"; transcript_id "RvY_12517.1"; Scaffold007 rebuild transcript 1883658 1887516 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; annotation "hypothetical protein."; Pfam "[Motile_Sperm] MSP (Major sperm protein) domain"; Scaffold007 rebuild exon 1883658 1883684 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1884004 1884514 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1884599 1884776 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1884836 1884962 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1885024 1885164 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1885433 1885627 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1885872 1886384 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1886961 1887341 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild exon 1887430 1887516 . - . gene_id "RvY_12518"; transcript_id "RvY_12518.1"; Scaffold007 rebuild transcript 1887623 1888123 . - . gene_id "RvY_12519"; transcript_id "RvY_12519.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1887623 1887899 . - . gene_id "RvY_12519"; transcript_id "RvY_12519.1"; Scaffold007 rebuild exon 1887987 1888123 . - . gene_id "RvY_12519"; transcript_id "RvY_12519.1"; Scaffold007 rebuild transcript 1889647 1890181 . - . gene_id "RvY_12520"; transcript_id "RvY_12520.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1889647 1889940 . - . gene_id "RvY_12520"; transcript_id "RvY_12520.1"; Scaffold007 rebuild exon 1890029 1890181 . - . gene_id "RvY_12520"; transcript_id "RvY_12520.1"; Scaffold007 rebuild transcript 1891397 1892338 . + . gene_id "RvY_12521"; transcript_id "RvY_12521.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold007 rebuild exon 1891397 1891414 . + . gene_id "RvY_12521"; transcript_id "RvY_12521.1"; Scaffold007 rebuild exon 1891958 1892338 . + . gene_id "RvY_12521"; transcript_id "RvY_12521.1"; Scaffold007 rebuild transcript 1893017 1893325 . - . gene_id "RvY_12522"; transcript_id "RvY_12522.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1893017 1893325 . - . gene_id "RvY_12522"; transcript_id "RvY_12522.1"; Scaffold007 rebuild transcript 1893712 1895743 . - . gene_id "RvY_12523"; transcript_id "RvY_12523.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1893712 1893827 . - . gene_id "RvY_12523"; transcript_id "RvY_12523.1"; Scaffold007 rebuild exon 1895584 1895743 . - . gene_id "RvY_12523"; transcript_id "RvY_12523.1"; Scaffold007 rebuild transcript 1896912 1897628 . - . gene_id "RvY_12524"; transcript_id "RvY_12524.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1896912 1897426 . - . gene_id "RvY_12524"; transcript_id "RvY_12524.1"; Scaffold007 rebuild exon 1897556 1897628 . - . gene_id "RvY_12524"; transcript_id "RvY_12524.1"; Scaffold007 rebuild transcript 1898236 1898637 . - . gene_id "RvY_12525"; transcript_id "RvY_12525.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1898236 1898637 . - . gene_id "RvY_12525"; transcript_id "RvY_12525.1"; Scaffold007 rebuild transcript 1899405 1900607 . - . gene_id "RvY_12526"; transcript_id "RvY_12526.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 1899405 1900607 . - . gene_id "RvY_12526"; transcript_id "RvY_12526.1"; Scaffold007 rebuild transcript 1901126 1901949 . - . gene_id "RvY_12527"; transcript_id "RvY_12527.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1901126 1901271 . - . gene_id "RvY_12527"; transcript_id "RvY_12527.1"; Scaffold007 rebuild exon 1901844 1901949 . - . gene_id "RvY_12527"; transcript_id "RvY_12527.1"; Scaffold007 rebuild transcript 1903523 1904635 . - . gene_id "RvY_12528"; transcript_id "RvY_12528.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 1903523 1904635 . - . gene_id "RvY_12528"; transcript_id "RvY_12528.1"; Scaffold007 rebuild transcript 1906030 1909458 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[PAN_4] PAN domain|[Astacin] Astacin (Peptidase family M12A)|[PAN_1] PAN domain"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold007 rebuild exon 1906030 1906505 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1906574 1906816 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1906887 1907068 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1907263 1907383 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1907445 1907529 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1908573 1908676 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1908740 1908820 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild exon 1909350 1909458 . - . gene_id "RvY_12529"; transcript_id "RvY_12529.1"; Scaffold007 rebuild transcript 1910245 1910424 . - . gene_id "RvY_12530"; transcript_id "RvY_12530.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1910245 1910424 . - . gene_id "RvY_12530"; transcript_id "RvY_12530.1"; Scaffold007 rebuild transcript 1910532 1911098 . - . gene_id "RvY_12531"; transcript_id "RvY_12531.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1910532 1911098 . - . gene_id "RvY_12531"; transcript_id "RvY_12531.1"; Scaffold007 rebuild transcript 1910872 1911363 . - . gene_id "RvY_12531"; transcript_id "RvY_12531.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1910872 1911363 . - . gene_id "RvY_12531"; transcript_id "RvY_12531.2"; Scaffold007 rebuild transcript 1912248 1913541 . + . gene_id "RvY_12532"; transcript_id "RvY_12532.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1912248 1912429 . + . gene_id "RvY_12532"; transcript_id "RvY_12532.1"; Scaffold007 rebuild exon 1912523 1913215 . + . gene_id "RvY_12532"; transcript_id "RvY_12532.1"; Scaffold007 rebuild exon 1913277 1913541 . + . gene_id "RvY_12532"; transcript_id "RvY_12532.1"; Scaffold007 rebuild transcript 1915644 1917895 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; gene_name "K01210"; annotation "glucan 1,3-beta-glucosidase [EC:3.2.1.58]"; Pfam "[PAN_4] PAN domain|[Cellulase] Cellulase (glycosyl hydrolase family 5)|[PAN_1] PAN domain"; CDD "Endoglucanase [Carbohydrate transport and metabolism]"; EC "EC3.2.1.58"; KO "K01210"; similar_genes "EXG_ASPOR(e-value:1.6e-11;bit-score:67.0)"; Scaffold007 rebuild exon 1915644 1915729 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; Scaffold007 rebuild exon 1915804 1916281 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; Scaffold007 rebuild exon 1916538 1917079 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; Scaffold007 rebuild exon 1917141 1917368 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; Scaffold007 rebuild exon 1917452 1917697 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; Scaffold007 rebuild exon 1917763 1917895 . - . gene_id "RvY_12533"; transcript_id "RvY_12533.1"; Scaffold007 rebuild transcript 1918433 1920717 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; gene_name "SEC62"; annotation "translocation protein SEC62"; Pfam "[Sec62] Translocation protein Sec62"; CDD "Translocation protein Sec62."; KO "K12275"; Scaffold007 rebuild exon 1918433 1918605 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1918839 1919186 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1919248 1919367 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1919718 1919883 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1919950 1920081 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1920142 1920244 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1920315 1920423 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1920493 1920610 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild exon 1920676 1920717 . - . gene_id "RvY_12534"; transcript_id "RvY_12534.1"; Scaffold007 rebuild transcript 1922149 1924268 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; similar_genes "NHDC2_XENTR(e-value:2.0e-11;bit-score:67.0)"; Scaffold007 rebuild exon 1922149 1922669 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild exon 1922856 1923038 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild exon 1923098 1923273 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild exon 1923350 1923456 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild exon 1923523 1923796 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild exon 1923871 1924085 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild exon 1924143 1924268 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.1"; Scaffold007 rebuild transcript 1921822 1923353 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.2"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; similar_genes "NHDC2_XENTR(e-value:2.0e-11;bit-score:67.0)"; Scaffold007 rebuild exon 1921822 1922669 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.2"; Scaffold007 rebuild exon 1922856 1923038 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.2"; Scaffold007 rebuild exon 1923098 1923353 . + . gene_id "RvY_12535"; transcript_id "RvY_12535.2"; Scaffold007 rebuild transcript 1925019 1925285 . + . gene_id "RvY_12536"; transcript_id "RvY_12536.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1925019 1925285 . + . gene_id "RvY_12536"; transcript_id "RvY_12536.1"; Scaffold007 rebuild transcript 1926048 1927477 . + . gene_id "RvY_12537"; transcript_id "RvY_12537.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1926048 1926138 . + . gene_id "RvY_12537"; transcript_id "RvY_12537.1"; Scaffold007 rebuild exon 1926213 1926476 . + . gene_id "RvY_12537"; transcript_id "RvY_12537.1"; Scaffold007 rebuild exon 1926536 1926934 . + . gene_id "RvY_12537"; transcript_id "RvY_12537.1"; Scaffold007 rebuild exon 1927251 1927477 . + . gene_id "RvY_12537"; transcript_id "RvY_12537.1"; Scaffold007 rebuild transcript 1928074 1929370 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; gene_name "GOSR1"; annotation "golgi SNAP receptor complex member 1"; Pfam "[V-SNARE_C] Snare region anchored in the vesicle membrane C-terminus"; KO "K08495"; similar_genes "GOSR1_MOUSE(e-value:2.6e-09;bit-score:60.0)"; Scaffold007 rebuild exon 1928074 1928198 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; Scaffold007 rebuild exon 1928455 1928537 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; Scaffold007 rebuild exon 1928618 1928889 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; Scaffold007 rebuild exon 1928950 1929037 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; Scaffold007 rebuild exon 1929100 1929241 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; Scaffold007 rebuild exon 1929325 1929370 . - . gene_id "RvY_12538"; transcript_id "RvY_12538.1"; Scaffold007 rebuild transcript 1929950 1931017 . + . gene_id "RvY_12539"; transcript_id "RvY_12539.1"; annotation "hypothetical protein."; Pfam "[Erv26] Transmembrane adaptor Erv26"; Scaffold007 rebuild exon 1929950 1930016 . + . gene_id "RvY_12539"; transcript_id "RvY_12539.1"; Scaffold007 rebuild exon 1930163 1930242 . + . gene_id "RvY_12539"; transcript_id "RvY_12539.1"; Scaffold007 rebuild exon 1930395 1930548 . + . gene_id "RvY_12539"; transcript_id "RvY_12539.1"; Scaffold007 rebuild exon 1930636 1930821 . + . gene_id "RvY_12539"; transcript_id "RvY_12539.1"; Scaffold007 rebuild exon 1930893 1931017 . + . gene_id "RvY_12539"; transcript_id "RvY_12539.1"; Scaffold007 rebuild transcript 1931289 1932431 . - . gene_id "RvY_12540"; transcript_id "RvY_12540.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1931289 1931360 . - . gene_id "RvY_12540"; transcript_id "RvY_12540.1"; Scaffold007 rebuild exon 1931489 1931850 . - . gene_id "RvY_12540"; transcript_id "RvY_12540.1"; Scaffold007 rebuild exon 1931999 1932431 . - . gene_id "RvY_12540"; transcript_id "RvY_12540.1"; Scaffold007 rebuild transcript 1932239 1932694 . - . gene_id "RvY_12540"; transcript_id "RvY_12540.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1932239 1932694 . - . gene_id "RvY_12540"; transcript_id "RvY_12540.2"; Scaffold007 rebuild transcript 1933302 1935626 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; gene_name "Acyltransferase"; annotation "putative Glycerol-3-phosphate acyltransferase 3-like"; Pfam "[Acyltransferase]"; CDD "Acyltransferase. This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene."; EC "EC2.3.1.15"; similar_genes "GPT3L_DANRE(e-value:5.8e-41;bit-score:165.0)"; Scaffold007 rebuild exon 1933302 1933460 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1933517 1933775 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1934090 1934375 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1934460 1934553 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1934785 1934956 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1935022 1935233 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1935296 1935517 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild exon 1935594 1935626 . + . gene_id "RvY_12541"; transcript_id "RvY_12541.1"; Scaffold007 rebuild transcript 1936974 1941400 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold007 rebuild exon 1936974 1937160 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1937527 1938136 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1938414 1938678 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1938747 1938904 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1939350 1939574 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1939945 1940073 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1941112 1941323 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild exon 1941399 1941400 . - . gene_id "RvY_12542"; transcript_id "RvY_12542.1"; Scaffold007 rebuild transcript 1941608 1942051 . + . gene_id "RvY_12543"; transcript_id "RvY_12543.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1941608 1942051 . + . gene_id "RvY_12543"; transcript_id "RvY_12543.1"; Scaffold007 rebuild transcript 1942868 1946353 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; gene_name "(1)SPPL3(2)Peptidase_A22B"; annotation "putative Signal peptide peptidase-like 3"; Pfam "[Peptidase_A22B] Signal peptide peptidase"; CDD "Signal peptide peptidase. The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080."; EC "EC3.4.23.-"; KO "(1)K09598"; similar_genes "PSL4_HUMAN(e-value:5.7e-39;bit-score:159.0)"; Scaffold007 rebuild exon 1942868 1943058 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1943149 1943299 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1943881 1943926 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1944009 1944404 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1944934 1945012 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1945119 1945247 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1945586 1945677 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1945877 1945954 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild exon 1946334 1946353 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.1"; Scaffold007 rebuild transcript 1943851 1946353 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; gene_name "(1)SPPL3(2)Peptidase_A22B"; annotation "putative Signal peptide peptidase-like 3"; Pfam "[Peptidase_A22B] Signal peptide peptidase"; CDD "Signal peptide peptidase. The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080."; EC "EC3.4.23.-"; KO "(1)K09598"; similar_genes "PSL4_HUMAN(e-value:5.7e-39;bit-score:159.0)"; Scaffold007 rebuild exon 1943851 1943926 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild exon 1944009 1944404 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild exon 1944934 1945012 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild exon 1945119 1945247 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild exon 1945586 1945677 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild exon 1945877 1945954 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild exon 1946334 1946353 . - . gene_id "RvY_12544"; transcript_id "RvY_12544.2"; Scaffold007 rebuild transcript 1944874 1945074 . + . gene_id "RvY_12545"; transcript_id "RvY_12545.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1944874 1945074 . + . gene_id "RvY_12545"; transcript_id "RvY_12545.1"; Scaffold007 rebuild transcript 1946701 1947302 . - . gene_id "RvY_12546"; transcript_id "RvY_12546.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1946701 1946834 . - . gene_id "RvY_12546"; transcript_id "RvY_12546.1"; Scaffold007 rebuild exon 1947197 1947302 . - . gene_id "RvY_12546"; transcript_id "RvY_12546.1"; Scaffold007 rebuild transcript 1947861 1951040 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; gene_name "CCT6"; annotation "T-complex protein 1 subunit zeta"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes."; KO "K09498"; similar_genes "TCPZ_MOUSE(e-value:1.1e-54;bit-score:211.0)"; Scaffold007 rebuild exon 1947861 1947942 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1948194 1948266 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1948469 1948711 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1948910 1949057 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1949121 1949217 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1949469 1949714 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1949880 1950126 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1950187 1950331 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1950400 1950534 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1950616 1950679 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild exon 1950904 1951040 . - . gene_id "RvY_12547"; transcript_id "RvY_12547.1"; Scaffold007 rebuild transcript 1951552 1955978 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; annotation "hypothetical protein."; Pfam "[SANTA] SANTA (SANT Associated)"; Scaffold007 rebuild exon 1951552 1952059 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1952321 1952680 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1952767 1952868 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1953053 1953487 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1953551 1953793 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1953857 1954024 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1954320 1954826 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1955207 1955597 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild exon 1955801 1955978 . + . gene_id "RvY_12548"; transcript_id "RvY_12548.1"; Scaffold007 rebuild transcript 1956605 1958103 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; gene_name "BCAS2"; annotation "pre-mRNA-splicing factor SPF27"; Pfam "[BCAS2] Breast carcinoma amplified sequence 2 (BCAS2)"; KO "K12861"; Scaffold007 rebuild exon 1956605 1956920 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild exon 1956986 1957066 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild exon 1957159 1957269 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild exon 1957373 1957474 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild exon 1957702 1957772 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild exon 1957834 1957935 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild exon 1958002 1958103 . - . gene_id "RvY_12549"; transcript_id "RvY_12549.1"; Scaffold007 rebuild transcript 1958526 1962885 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; gene_name "TIR"; annotation "Sterile alpha and TIR motif-containing protein 1"; Pfam "[TIR_2] TIR domain|[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; CDD "Toll - interleukin 1 - resistance."; similar_genes "SARM1_DROME(e-value:5.0e-57;bit-score:219.0)"; Scaffold007 rebuild exon 1958526 1958822 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1958894 1959083 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1959284 1959741 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1959941 1960117 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1960271 1960599 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1960871 1961693 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1961829 1962364 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1962579 1962700 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild exon 1962875 1962885 . - . gene_id "RvY_12550"; transcript_id "RvY_12550.1"; Scaffold007 rebuild transcript 1962602 1962808 . + . gene_id "RvY_12551"; transcript_id "RvY_12551.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1962602 1962808 . + . gene_id "RvY_12551"; transcript_id "RvY_12551.1"; Scaffold007 rebuild transcript 1964650 1964952 . - . gene_id "RvY_12552"; transcript_id "RvY_12552.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1964650 1964952 . - . gene_id "RvY_12552"; transcript_id "RvY_12552.1"; Scaffold007 rebuild transcript 1964994 1966270 . - . gene_id "RvY_12553"; transcript_id "RvY_12553.1"; gene_name "SARS"; annotation "seryl-tRNA synthetase [EC:6.1.1.11]"; Pfam "[tRNA-synt_2b] tRNA synthetase class II core domain (G, H, P, S and T)"; CDD "Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer."; EC "EC6.1.1.11"; KO "K01875"; similar_genes "SYSM_MOUSE(e-value:3.2e-16;bit-score:83.0)"; Scaffold007 rebuild exon 1964994 1965543 . - . gene_id "RvY_12553"; transcript_id "RvY_12553.1"; Scaffold007 rebuild exon 1965837 1966270 . - . gene_id "RvY_12553"; transcript_id "RvY_12553.1"; Scaffold007 rebuild transcript 1966697 1967569 . + . gene_id "RvY_12554"; transcript_id "RvY_12554.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1966697 1966849 . + . gene_id "RvY_12554"; transcript_id "RvY_12554.1"; Scaffold007 rebuild exon 1966910 1967569 . + . gene_id "RvY_12554"; transcript_id "RvY_12554.1"; Scaffold007 rebuild transcript 1968855 1969403 . + . gene_id "RvY_12555"; transcript_id "RvY_12555.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1968855 1969403 . + . gene_id "RvY_12555"; transcript_id "RvY_12555.1"; Scaffold007 rebuild transcript 1968269 1968928 . + . gene_id "RvY_12555"; transcript_id "RvY_12555.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1968269 1968409 . + . gene_id "RvY_12555"; transcript_id "RvY_12555.2"; Scaffold007 rebuild exon 1968626 1968928 . + . gene_id "RvY_12555"; transcript_id "RvY_12555.2"; Scaffold007 rebuild transcript 1969837 1970875 . + . gene_id "RvY_12556"; transcript_id "RvY_12556.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1969837 1970028 . + . gene_id "RvY_12556"; transcript_id "RvY_12556.1"; Scaffold007 rebuild exon 1970198 1970875 . + . gene_id "RvY_12556"; transcript_id "RvY_12556.1"; Scaffold007 rebuild transcript 1971116 1974980 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; gene_name "AFG3"; annotation "AFG3-like protein 2"; Pfam "[Peptidase_M41] Peptidase family M41|[FtsH_ext] FtsH Extracellular|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH."; EC "EC3.4.24.-"; KO "K08956"; similar_genes "AFG32_BOVIN(e-value:2.6e-128;bit-score:455.0)"; Scaffold007 rebuild exon 1971116 1971352 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1971457 1971651 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1971746 1971865 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1972035 1972374 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1972441 1972636 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1972790 1972943 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1973038 1973278 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1973348 1973516 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1973777 1974162 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1974362 1974623 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild exon 1974737 1974980 . - . gene_id "RvY_12557"; transcript_id "RvY_12557.1"; Scaffold007 rebuild transcript 1976815 1977156 . + . gene_id "RvY_12558"; transcript_id "RvY_12558.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1976815 1977156 . + . gene_id "RvY_12558"; transcript_id "RvY_12558.1"; Scaffold007 rebuild transcript 1977231 1979365 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; gene_name "PIGS"; annotation "phosphatidylinositol glycan, class S"; Pfam "[PIG-S] Phosphatidylinositol-glycan biosynthesis class S protein"; KO "K05291"; similar_genes "PIGS_RAT(e-value:2.7e-11;bit-score:67.0)"; Scaffold007 rebuild exon 1977231 1977599 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1977655 1977799 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1978044 1978220 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1978286 1978548 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1978611 1978649 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1978717 1978948 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1979055 1979112 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild exon 1979233 1979365 . + . gene_id "RvY_12559"; transcript_id "RvY_12559.1"; Scaffold007 rebuild transcript 1980508 1980822 . - . gene_id "RvY_12560"; transcript_id "RvY_12560.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1980508 1980822 . - . gene_id "RvY_12560"; transcript_id "RvY_12560.1"; Scaffold007 rebuild transcript 1981148 1982037 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1981148 1981288 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.1"; Scaffold007 rebuild exon 1981682 1981812 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.1"; Scaffold007 rebuild exon 1981932 1982037 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.1"; Scaffold007 rebuild transcript 1981148 1981964 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1981148 1981288 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.2"; Scaffold007 rebuild exon 1981681 1981812 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.2"; Scaffold007 rebuild exon 1981932 1981964 . + . gene_id "RvY_12561"; transcript_id "RvY_12561.2"; Scaffold007 rebuild transcript 1984251 1985093 . - . gene_id "RvY_12562"; transcript_id "RvY_12562.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 1984251 1984599 . - . gene_id "RvY_12562"; transcript_id "RvY_12562.1"; Scaffold007 rebuild exon 1984724 1984943 . - . gene_id "RvY_12562"; transcript_id "RvY_12562.1"; Scaffold007 rebuild exon 1985036 1985093 . - . gene_id "RvY_12562"; transcript_id "RvY_12562.1"; Scaffold007 rebuild transcript 1985746 2008265 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; gene_name "DYNC1H"; annotation "Dynein heavy chain, cytoplasmic"; Pfam "[MT] Microtubule-binding stalk of dynein motor|[Dynein_heavy] Dynein heavy chain and region D6 of dynein motor|[AAA_16] AAA ATPase domain|[DUF4151]|[AAA_7] P-loop containing dynein motor region D3|[AAA_8] P-loop containing dynein motor region D4|[AAA_9] ATP-binding dynein motor region D5|[T2SE] Type II/IV secretion system protein|[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[DHC_N1] Dynein heavy chain, N-terminal region 1|[AAA_17] AAA domain|[AAA_6] Hydrolytic ATP binding site of dynein motor region D1|[DHC_N2] Dynein heavy chain, N-terminal region 2|[AAA_33] AAA domain"; CDD "Dynein, heavy chain [Cytoskeleton]"; KO "K10413"; similar_genes "DYHC_DROME(e-value:0.0e+00;bit-score:1281.0)"; Scaffold007 rebuild exon 1985746 1985892 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1985963 1986087 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1986615 1986864 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1987030 1987365 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1987621 1987941 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1988004 1988235 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1988579 1989009 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1989299 1989462 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1989525 1989769 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1989834 1990078 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1990305 1990709 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1990896 1991112 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1991185 1991369 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1991434 1991673 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1991955 1992224 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1992336 1992399 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1992471 1992666 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1992735 1993092 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1993173 1993385 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1993631 1994056 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1994194 1994385 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1994448 1994634 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1994902 1995203 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1995568 1995942 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1996006 1996239 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1996499 1996870 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1997072 1997375 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1997439 1997770 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1998067 1998445 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1998500 1998888 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1999347 1999480 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1999555 1999837 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 1999910 2000077 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2000158 2000421 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2000663 2001013 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2001075 2001353 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2001583 2001894 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2002027 2002404 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2002471 2002617 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2002684 2003074 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2003286 2003708 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2003991 2004277 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2004350 2004556 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2004620 2004898 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2005185 2005403 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2005465 2005789 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2006062 2006288 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2006356 2006763 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2006998 2007250 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2007591 2007764 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2007844 2007931 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild exon 2008013 2008265 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.1"; Scaffold007 rebuild transcript 1985746 2008265 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; gene_name "DYNC1H"; annotation "Dynein heavy chain, cytoplasmic"; Pfam "[MT] Microtubule-binding stalk of dynein motor|[Dynein_heavy] Dynein heavy chain and region D6 of dynein motor|[AAA_16] AAA ATPase domain|[DUF4151]|[AAA_7] P-loop containing dynein motor region D3|[AAA_8] P-loop containing dynein motor region D4|[AAA_9] ATP-binding dynein motor region D5|[T2SE] Type II/IV secretion system protein|[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_18] AAA domain|[DHC_N1] Dynein heavy chain, N-terminal region 1|[AAA_17] AAA domain|[AAA_6] Hydrolytic ATP binding site of dynein motor region D1|[DHC_N2] Dynein heavy chain, N-terminal region 2|[AAA_33] AAA domain"; CDD "Dynein, heavy chain [Cytoskeleton]"; KO "K10413"; similar_genes "DYHC_DROME(e-value:0.0e+00;bit-score:1281.0)"; Scaffold007 rebuild exon 1985746 1985892 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1985963 1986087 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1986615 1986864 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1987030 1987365 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1987621 1987941 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1988004 1988235 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1988579 1989009 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1989299 1989462 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1989525 1989769 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1989834 1990078 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1990305 1990709 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1990896 1991112 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1991185 1991369 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1991434 1991673 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1991955 1992224 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1992336 1992399 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1992471 1992666 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1992735 1993092 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1993173 1993385 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1993631 1994056 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1994194 1994385 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1994448 1994634 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1994902 1995203 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1995568 1995942 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1996006 1996239 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1996499 1996870 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1997072 1997375 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1997439 1997770 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1998067 1998445 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1998500 1998888 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1999347 1999480 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1999555 1999837 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 1999910 2000077 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2000158 2000421 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2000663 2001013 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2001075 2001353 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2001583 2001894 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2002027 2002404 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2002471 2002617 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2002684 2003074 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2003286 2003708 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2003991 2004277 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2004350 2004556 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2004620 2004898 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2005185 2005403 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2005465 2005789 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2006062 2006288 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2006356 2006758 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2006993 2007250 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2007591 2007764 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2007844 2007931 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild exon 2008013 2008265 . - . gene_id "RvY_12563"; transcript_id "RvY_12563.2"; Scaffold007 rebuild transcript 2008860 2009153 . + . gene_id "RvY_12564"; transcript_id "RvY_12564.1"; annotation "putative Mitochondrial import inner membrane translocase subunit Tim10"; Pfam "[zf-Tim10_DDP] Tim10/DDP family zinc finger"; similar_genes "TIM10_DROME(e-value:2.6e-26;bit-score:116.0)"; Scaffold007 rebuild exon 2008860 2009153 . + . gene_id "RvY_12564"; transcript_id "RvY_12564.1"; Scaffold007 rebuild transcript 2009614 2010256 . + . gene_id "RvY_12565"; transcript_id "RvY_12565.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2009614 2009817 . + . gene_id "RvY_12565"; transcript_id "RvY_12565.1"; Scaffold007 rebuild exon 2009899 2009985 . + . gene_id "RvY_12565"; transcript_id "RvY_12565.1"; Scaffold007 rebuild exon 2010089 2010256 . + . gene_id "RvY_12565"; transcript_id "RvY_12565.1"; Scaffold007 rebuild transcript 2010477 2012501 . - . gene_id "RvY_12566"; transcript_id "RvY_12566.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold007 rebuild exon 2010477 2010494 . - . gene_id "RvY_12566"; transcript_id "RvY_12566.1"; Scaffold007 rebuild exon 2010658 2011295 . - . gene_id "RvY_12566"; transcript_id "RvY_12566.1"; Scaffold007 rebuild exon 2011391 2012501 . - . gene_id "RvY_12566"; transcript_id "RvY_12566.1"; Scaffold007 rebuild transcript 2015044 2026134 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; gene_name "TRIM9_67"; annotation "putative Tripartite motif-containing protein 9"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-B_box] B-box zinc finger|[SPRY]"; KO "K10649"; similar_genes "TRIM9_BOVIN(e-value:8.7e-42;bit-score:168.0)"; Scaffold007 rebuild exon 2015044 2015425 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2015798 2016354 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2024332 2024427 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2024529 2024762 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2024918 2025205 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2025288 2025426 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2025499 2025720 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild exon 2025830 2026134 . + . gene_id "RvY_12567"; transcript_id "RvY_12567.1"; Scaffold007 rebuild transcript 2018103 2018693 . - . gene_id "RvY_12568"; transcript_id "RvY_12568.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2018103 2018341 . - . gene_id "RvY_12568"; transcript_id "RvY_12568.1"; Scaffold007 rebuild exon 2018483 2018693 . - . gene_id "RvY_12568"; transcript_id "RvY_12568.1"; Scaffold007 rebuild transcript 2019632 2019844 . - . gene_id "RvY_12569"; transcript_id "RvY_12569.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2019632 2019844 . - . gene_id "RvY_12569"; transcript_id "RvY_12569.1"; Scaffold007 rebuild transcript 2027760 2028824 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2027760 2028273 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.1"; Scaffold007 rebuild exon 2028404 2028511 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.1"; Scaffold007 rebuild exon 2028682 2028824 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.1"; Scaffold007 rebuild transcript 2027798 2028488 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2027798 2027966 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.2"; Scaffold007 rebuild exon 2028022 2028488 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.2"; Scaffold007 rebuild transcript 2027287 2028067 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2027287 2027289 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.3"; Scaffold007 rebuild exon 2027397 2027465 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.3"; Scaffold007 rebuild exon 2027549 2028067 . + . gene_id "RvY_12570"; transcript_id "RvY_12570.3"; Scaffold007 rebuild transcript 2029491 2031634 . + . gene_id "RvY_12571"; transcript_id "RvY_12571.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 2029491 2029735 . + . gene_id "RvY_12571"; transcript_id "RvY_12571.1"; Scaffold007 rebuild exon 2030321 2030455 . + . gene_id "RvY_12571"; transcript_id "RvY_12571.1"; Scaffold007 rebuild exon 2030550 2030796 . + . gene_id "RvY_12571"; transcript_id "RvY_12571.1"; Scaffold007 rebuild exon 2030954 2031634 . + . gene_id "RvY_12571"; transcript_id "RvY_12571.1"; Scaffold007 rebuild transcript 2032328 2033663 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_5] EF-hand domain pair"; Scaffold007 rebuild exon 2032328 2032385 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild exon 2032486 2032563 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild exon 2032653 2032741 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild exon 2033013 2033117 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild exon 2033192 2033219 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild exon 2033311 2033408 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild exon 2033490 2033663 . + . gene_id "RvY_12572"; transcript_id "RvY_12572.1"; Scaffold007 rebuild transcript 2033772 2035010 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_4] EF-hand domain"; Scaffold007 rebuild exon 2033772 2033906 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild exon 2033999 2034065 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild exon 2034131 2034161 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild exon 2034240 2034291 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild exon 2034354 2034452 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild exon 2034677 2034861 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild exon 2034950 2035010 . - . gene_id "RvY_12573"; transcript_id "RvY_12573.1"; Scaffold007 rebuild transcript 2035881 2037270 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; annotation "Transmembrane protein 41B"; Pfam "[SNARE_assoc] SNARE associated Golgi protein"; similar_genes "TM41B_DANRE(e-value:6.6e-76;bit-score:281.0)"; Scaffold007 rebuild exon 2035881 2036044 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; Scaffold007 rebuild exon 2036102 2036230 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; Scaffold007 rebuild exon 2036296 2036389 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; Scaffold007 rebuild exon 2036545 2036649 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; Scaffold007 rebuild exon 2036769 2036907 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; Scaffold007 rebuild exon 2037101 2037270 . + . gene_id "RvY_12574"; transcript_id "RvY_12574.1"; Scaffold007 rebuild transcript 2037873 2039081 . + . gene_id "RvY_12575"; transcript_id "RvY_12575.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2037873 2038149 . + . gene_id "RvY_12575"; transcript_id "RvY_12575.1"; Scaffold007 rebuild exon 2038996 2039081 . + . gene_id "RvY_12575"; transcript_id "RvY_12575.1"; Scaffold007 rebuild transcript 2039113 2044854 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2039113 2039155 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2040779 2040931 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2041003 2041203 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2041298 2041426 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2041675 2041783 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2042320 2042730 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2042947 2043257 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2043687 2043986 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2044050 2044201 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild exon 2044564 2044854 . + . gene_id "RvY_12576"; transcript_id "RvY_12576.1"; Scaffold007 rebuild transcript 2056662 2057675 . - . gene_id "RvY_12577"; transcript_id "RvY_12577.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2056662 2057230 . - . gene_id "RvY_12577"; transcript_id "RvY_12577.1"; Scaffold007 rebuild exon 2057612 2057675 . - . gene_id "RvY_12577"; transcript_id "RvY_12577.1"; Scaffold007 rebuild transcript 2059264 2060195 . - . gene_id "RvY_12578"; transcript_id "RvY_12578.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2059264 2060031 . - . gene_id "RvY_12578"; transcript_id "RvY_12578.1"; Scaffold007 rebuild exon 2060118 2060195 . - . gene_id "RvY_12578"; transcript_id "RvY_12578.1"; Scaffold007 rebuild transcript 2060738 2061288 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.1"; gene_name "(1)BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "(1)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold007 rebuild exon 2060738 2060999 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.1"; Scaffold007 rebuild exon 2061104 2061288 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.1"; Scaffold007 rebuild transcript 2060922 2061296 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.2"; gene_name "(1)BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "(1)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold007 rebuild exon 2060922 2061296 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.2"; Scaffold007 rebuild transcript 2060315 2060741 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.3"; gene_name "(1)BTB"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; CDD "(1)Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures."; Scaffold007 rebuild exon 2060315 2060545 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.3"; Scaffold007 rebuild exon 2060610 2060741 . - . gene_id "RvY_12579"; transcript_id "RvY_12579.3"; Scaffold007 rebuild transcript 2063591 2064357 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.1"; gene_name "(2,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(2,4)[zf-C4] Zinc finger, C4 type (two domains)|(3)[DDE_4] DDE superfamily endonuclease"; CDD "(2,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(2)USP_CHOFU(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 2063591 2064133 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.1"; Scaffold007 rebuild exon 2064199 2064357 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.1"; Scaffold007 rebuild transcript 2062917 2066921 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.2"; gene_name "(2,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(2,4)[zf-C4] Zinc finger, C4 type (two domains)|(3)[DDE_4] DDE superfamily endonuclease"; CDD "(2,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(2)USP_CHOFU(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 2062917 2063288 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.2"; Scaffold007 rebuild exon 2066496 2066622 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.2"; Scaffold007 rebuild exon 2066722 2066921 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.2"; Scaffold007 rebuild transcript 2064323 2064748 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.3"; gene_name "(2,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(2,4)[zf-C4] Zinc finger, C4 type (two domains)|(3)[DDE_4] DDE superfamily endonuclease"; CDD "(2,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(2)USP_CHOFU(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 2064323 2064748 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.3"; Scaffold007 rebuild transcript 2062917 2063321 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.4"; gene_name "(2,4)NR_DBD_like"; annotation "hypothetical protein."; Pfam "(2,4)[zf-C4] Zinc finger, C4 type (two domains)|(3)[DDE_4] DDE superfamily endonuclease"; CDD "(2,4)DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with a specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Most nuclear receptors bind as homodimers or heterodimers to their target sites, which consist of two hexameric half-sites. Specificity is determined by the half-site sequence, the relative orientation of the half-sites and the number of spacer nucleotides between the half-sites. However, a growing number of nuclear receptors have been reported to bind to DNA as monomers."; similar_genes "(2)USP_CHOFU(e-value:2.9e-06;bit-score:50.0)"; Scaffold007 rebuild exon 2062917 2063321 . + . gene_id "RvY_12580"; transcript_id "RvY_12580.4"; Scaffold007 rebuild transcript 2064753 2065924 . - . gene_id "RvY_12581"; transcript_id "RvY_12581.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2064753 2065324 . - . gene_id "RvY_12581"; transcript_id "RvY_12581.1"; Scaffold007 rebuild exon 2065456 2065924 . - . gene_id "RvY_12581"; transcript_id "RvY_12581.1"; Scaffold007 rebuild transcript 2067126 2068552 . + . gene_id "RvY_12582"; transcript_id "RvY_12582.1"; gene_name "NR_LBD_F1"; annotation "hypothetical protein."; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor"; CDD "Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; Scaffold007 rebuild exon 2067126 2067128 . + . gene_id "RvY_12582"; transcript_id "RvY_12582.1"; Scaffold007 rebuild exon 2067432 2067639 . + . gene_id "RvY_12582"; transcript_id "RvY_12582.1"; Scaffold007 rebuild exon 2067876 2068037 . + . gene_id "RvY_12582"; transcript_id "RvY_12582.1"; Scaffold007 rebuild exon 2068410 2068552 . + . gene_id "RvY_12582"; transcript_id "RvY_12582.1"; Scaffold007 rebuild transcript 2069504 2070196 . - . gene_id "RvY_12583"; transcript_id "RvY_12583.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 2069504 2070196 . - . gene_id "RvY_12583"; transcript_id "RvY_12583.1"; Scaffold007 rebuild transcript 2071386 2071709 . - . gene_id "RvY_12584"; transcript_id "RvY_12584.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2071386 2071709 . - . gene_id "RvY_12584"; transcript_id "RvY_12584.1"; Scaffold007 rebuild transcript 2072198 2072796 . + . gene_id "RvY_12585"; transcript_id "RvY_12585.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; Scaffold007 rebuild exon 2072198 2072258 . + . gene_id "RvY_12585"; transcript_id "RvY_12585.1"; Scaffold007 rebuild exon 2072382 2072440 . + . gene_id "RvY_12585"; transcript_id "RvY_12585.1"; Scaffold007 rebuild exon 2072528 2072635 . + . gene_id "RvY_12585"; transcript_id "RvY_12585.1"; Scaffold007 rebuild exon 2072710 2072796 . + . gene_id "RvY_12585"; transcript_id "RvY_12585.1"; Scaffold007 rebuild transcript 2072923 2073961 . - . gene_id "RvY_12586"; transcript_id "RvY_12586.1"; gene_name "gst"; annotation "glutathione S-transferase [EC:2.5.1.18]"; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an Scaffold007 rebuild exon 2072923 2073282 . - . gene_id "RvY_12586"; transcript_id "RvY_12586.1"; Scaffold007 rebuild exon 2073513 2073669 . - . gene_id "RvY_12586"; transcript_id "RvY_12586.1"; Scaffold007 rebuild exon 2073762 2073961 . - . gene_id "RvY_12586"; transcript_id "RvY_12586.1"; Scaffold007 rebuild transcript 2074759 2075010 . - . gene_id "RvY_12587"; transcript_id "RvY_12587.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2074759 2075010 . - . gene_id "RvY_12587"; transcript_id "RvY_12587.1"; Scaffold007 rebuild transcript 2074933 2077231 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2074933 2074972 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.1"; Scaffold007 rebuild exon 2075037 2075462 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.1"; Scaffold007 rebuild exon 2075686 2075870 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.1"; Scaffold007 rebuild exon 2075981 2076496 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.1"; Scaffold007 rebuild exon 2076932 2077231 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.1"; Scaffold007 rebuild transcript 2075030 2077231 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2075030 2075462 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.2"; Scaffold007 rebuild exon 2075686 2075870 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.2"; Scaffold007 rebuild exon 2075981 2076496 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.2"; Scaffold007 rebuild exon 2076932 2077231 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.2"; Scaffold007 rebuild transcript 2074933 2077231 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.3"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2074933 2074972 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.3"; Scaffold007 rebuild exon 2075100 2075462 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.3"; Scaffold007 rebuild exon 2075686 2075870 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.3"; Scaffold007 rebuild exon 2075981 2076496 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.3"; Scaffold007 rebuild exon 2076932 2077231 . + . gene_id "RvY_12588"; transcript_id "RvY_12588.3"; Scaffold007 rebuild transcript 2077875 2081783 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2077875 2077959 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2078050 2078084 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2078157 2078262 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2078350 2078428 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2080040 2080113 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2080221 2080277 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2080344 2080407 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2080529 2080604 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild exon 2080683 2081783 . + . gene_id "RvY_12589"; transcript_id "RvY_12589.1"; Scaffold007 rebuild transcript 2082254 2082975 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2082254 2082302 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.1"; Scaffold007 rebuild exon 2082374 2082457 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.1"; Scaffold007 rebuild exon 2082628 2082780 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.1"; Scaffold007 rebuild exon 2082848 2082975 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.1"; Scaffold007 rebuild transcript 2082084 2082639 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2082084 2082302 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.2"; Scaffold007 rebuild exon 2082374 2082457 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.2"; Scaffold007 rebuild exon 2082628 2082639 . + . gene_id "RvY_12590"; transcript_id "RvY_12590.2"; Scaffold007 rebuild transcript 2083307 2083644 . + . gene_id "RvY_12591"; transcript_id "RvY_12591.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2083307 2083372 . + . gene_id "RvY_12591"; transcript_id "RvY_12591.1"; Scaffold007 rebuild exon 2083576 2083644 . + . gene_id "RvY_12591"; transcript_id "RvY_12591.1"; Scaffold007 rebuild transcript 2084980 2085378 . - . gene_id "RvY_12592"; transcript_id "RvY_12592.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2084980 2085378 . - . gene_id "RvY_12592"; transcript_id "RvY_12592.1"; Scaffold007 rebuild transcript 2085583 2086917 . + . gene_id "RvY_12593"; transcript_id "RvY_12593.1"; gene_name "PTZ00110"; annotation "hypothetical protein."; CDD "helicase; Provisional"; Scaffold007 rebuild exon 2085583 2086125 . + . gene_id "RvY_12593"; transcript_id "RvY_12593.1"; Scaffold007 rebuild exon 2086361 2086736 . + . gene_id "RvY_12593"; transcript_id "RvY_12593.1"; Scaffold007 rebuild exon 2086802 2086917 . + . gene_id "RvY_12593"; transcript_id "RvY_12593.1"; Scaffold007 rebuild transcript 2089126 2090369 . + . gene_id "RvY_12594"; transcript_id "RvY_12594.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2089126 2089236 . + . gene_id "RvY_12594"; transcript_id "RvY_12594.1"; Scaffold007 rebuild exon 2089338 2089518 . + . gene_id "RvY_12594"; transcript_id "RvY_12594.1"; Scaffold007 rebuild exon 2089644 2090192 . + . gene_id "RvY_12594"; transcript_id "RvY_12594.1"; Scaffold007 rebuild exon 2090350 2090369 . + . gene_id "RvY_12594"; transcript_id "RvY_12594.1"; Scaffold007 rebuild transcript 2091638 2093114 . + . gene_id "RvY_12595"; transcript_id "RvY_12595.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2091638 2091703 . + . gene_id "RvY_12595"; transcript_id "RvY_12595.1"; Scaffold007 rebuild exon 2092270 2092324 . + . gene_id "RvY_12595"; transcript_id "RvY_12595.1"; Scaffold007 rebuild exon 2092810 2093114 . + . gene_id "RvY_12595"; transcript_id "RvY_12595.1"; Scaffold007 rebuild transcript 2094516 2096207 . + . gene_id "RvY_12596"; transcript_id "RvY_12596.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2094516 2095007 . + . gene_id "RvY_12596"; transcript_id "RvY_12596.1"; Scaffold007 rebuild exon 2095344 2096207 . + . gene_id "RvY_12596"; transcript_id "RvY_12596.1"; Scaffold007 rebuild transcript 2096598 2099133 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; gene_name "SETD6"; annotation "SET domain-containing protein 6"; Pfam "[SET]"; KO "K05302"; Scaffold007 rebuild exon 2096598 2096841 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2097082 2097127 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2097215 2097386 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2097459 2097671 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2097748 2098057 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2098119 2098250 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2098447 2098594 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2098666 2098810 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2098876 2099016 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild exon 2099077 2099133 . - . gene_id "RvY_12597"; transcript_id "RvY_12597.1"; Scaffold007 rebuild transcript 2099157 2099474 . - . gene_id "RvY_12598"; transcript_id "RvY_12598.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2099157 2099474 . - . gene_id "RvY_12598"; transcript_id "RvY_12598.1"; Scaffold007 rebuild transcript 2100400 2103537 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; gene_name "WEE1"; annotation "wee1-like protein kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; EC "EC2.7.11.1"; KO "K06632"; Scaffold007 rebuild exon 2100400 2100786 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2100938 2101033 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2101144 2101370 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2101654 2101935 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2102023 2102144 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2102302 2102448 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2102530 2102625 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2102693 2102856 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2102925 2103038 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild exon 2103337 2103537 . + . gene_id "RvY_12599"; transcript_id "RvY_12599.1"; Scaffold007 rebuild transcript 2104380 2104808 . + . gene_id "RvY_12600"; transcript_id "RvY_12600.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2104380 2104808 . + . gene_id "RvY_12600"; transcript_id "RvY_12600.1"; Scaffold007 rebuild transcript 2106302 2107825 . - . gene_id "RvY_12601"; transcript_id "RvY_12601.1"; annotation "hypothetical protein."; Pfam "[Cupin_8] Cupin-like domain"; Scaffold007 rebuild exon 2106302 2106387 . - . gene_id "RvY_12601"; transcript_id "RvY_12601.1"; Scaffold007 rebuild exon 2106477 2106606 . - . gene_id "RvY_12601"; transcript_id "RvY_12601.1"; Scaffold007 rebuild exon 2106892 2107325 . - . gene_id "RvY_12601"; transcript_id "RvY_12601.1"; Scaffold007 rebuild exon 2107462 2107825 . - . gene_id "RvY_12601"; transcript_id "RvY_12601.1"; Scaffold007 rebuild transcript 2109207 2109422 . - . gene_id "RvY_12602"; transcript_id "RvY_12602.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2109207 2109422 . - . gene_id "RvY_12602"; transcript_id "RvY_12602.1"; Scaffold007 rebuild transcript 2110268 2110618 . + . gene_id "RvY_12603"; transcript_id "RvY_12603.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2110268 2110327 . + . gene_id "RvY_12603"; transcript_id "RvY_12603.1"; Scaffold007 rebuild exon 2110333 2110398 . + . gene_id "RvY_12603"; transcript_id "RvY_12603.1"; Scaffold007 rebuild exon 2110532 2110618 . + . gene_id "RvY_12603"; transcript_id "RvY_12603.1"; Scaffold007 rebuild transcript 2110955 2111149 . - . gene_id "RvY_12604"; transcript_id "RvY_12604.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2110955 2111149 . - . gene_id "RvY_12604"; transcript_id "RvY_12604.1"; Scaffold007 rebuild transcript 2114129 2114865 . + . gene_id "RvY_12605"; transcript_id "RvY_12605.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2114129 2114640 . + . gene_id "RvY_12605"; transcript_id "RvY_12605.1"; Scaffold007 rebuild exon 2114733 2114865 . + . gene_id "RvY_12605"; transcript_id "RvY_12605.1"; Scaffold007 rebuild transcript 2115202 2115643 . + . gene_id "RvY_12606"; transcript_id "RvY_12606.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2115202 2115281 . + . gene_id "RvY_12606"; transcript_id "RvY_12606.1"; Scaffold007 rebuild exon 2115526 2115643 . + . gene_id "RvY_12606"; transcript_id "RvY_12606.1"; Scaffold007 rebuild transcript 2115644 2116499 . + . gene_id "RvY_12607"; transcript_id "RvY_12607.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2115644 2115868 . + . gene_id "RvY_12607"; transcript_id "RvY_12607.1"; Scaffold007 rebuild exon 2115956 2116105 . + . gene_id "RvY_12607"; transcript_id "RvY_12607.1"; Scaffold007 rebuild exon 2116266 2116499 . + . gene_id "RvY_12607"; transcript_id "RvY_12607.1"; Scaffold007 rebuild transcript 2116505 2116939 . + . gene_id "RvY_12608"; transcript_id "RvY_12608.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold007 rebuild exon 2116505 2116939 . + . gene_id "RvY_12608"; transcript_id "RvY_12608.1"; Scaffold007 rebuild transcript 2117238 2118141 . - . gene_id "RvY_12609"; transcript_id "RvY_12609.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2117238 2117390 . - . gene_id "RvY_12609"; transcript_id "RvY_12609.1"; Scaffold007 rebuild exon 2118034 2118141 . - . gene_id "RvY_12609"; transcript_id "RvY_12609.1"; Scaffold007 rebuild transcript 2118646 2119361 . - . gene_id "RvY_12610"; transcript_id "RvY_12610.1"; annotation "hypothetical protein."; Pfam "[Sulfotransfer_1] Sulfotransferase domain"; Scaffold007 rebuild exon 2118646 2118780 . - . gene_id "RvY_12610"; transcript_id "RvY_12610.1"; Scaffold007 rebuild exon 2118859 2119089 . - . gene_id "RvY_12610"; transcript_id "RvY_12610.1"; Scaffold007 rebuild exon 2119251 2119361 . - . gene_id "RvY_12610"; transcript_id "RvY_12610.1"; Scaffold007 rebuild transcript 2122409 2123408 . + . gene_id "RvY_12611"; transcript_id "RvY_12611.1"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; Scaffold007 rebuild exon 2122409 2122795 . + . gene_id "RvY_12611"; transcript_id "RvY_12611.1"; Scaffold007 rebuild exon 2122891 2122977 . + . gene_id "RvY_12611"; transcript_id "RvY_12611.1"; Scaffold007 rebuild exon 2123084 2123145 . + . gene_id "RvY_12611"; transcript_id "RvY_12611.1"; Scaffold007 rebuild exon 2123210 2123408 . + . gene_id "RvY_12611"; transcript_id "RvY_12611.1"; Scaffold007 rebuild transcript 2124129 2126201 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; annotation "hypothetical protein."; Pfam "[His_Phos_2] Histidine phosphatase superfamily (branch 2)"; EC "EC3.1.3.2"; KO "K14410"; similar_genes "PPAT_XENLA(e-value:1.4e-14;bit-score:78.0)"; Scaffold007 rebuild exon 2124129 2124254 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2124334 2124516 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2124607 2124873 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2124944 2125267 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2125360 2125455 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2125606 2125667 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2125739 2125914 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild exon 2126002 2126201 . + . gene_id "RvY_12612"; transcript_id "RvY_12612.1"; Scaffold007 rebuild transcript 2128237 2130208 . + . gene_id "RvY_12613"; transcript_id "RvY_12613.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold007 rebuild exon 2128237 2128734 . + . gene_id "RvY_12613"; transcript_id "RvY_12613.1"; Scaffold007 rebuild exon 2129346 2129479 . + . gene_id "RvY_12613"; transcript_id "RvY_12613.1"; Scaffold007 rebuild exon 2129578 2130208 . + . gene_id "RvY_12613"; transcript_id "RvY_12613.1"; Scaffold007 rebuild transcript 2130813 2131805 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 2130813 2131805 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.1"; Scaffold007 rebuild transcript 2130918 2131805 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 2130918 2131805 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.2"; Scaffold007 rebuild transcript 2131059 2131916 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 2131059 2131739 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.3"; Scaffold007 rebuild exon 2131815 2131916 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.3"; Scaffold007 rebuild transcript 2131059 2131805 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.4"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold007 rebuild exon 2131059 2131805 . + . gene_id "RvY_12614"; transcript_id "RvY_12614.4"; Scaffold007 rebuild transcript 2135169 2135330 . + . gene_id "RvY_12615"; transcript_id "RvY_12615.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2135169 2135330 . + . gene_id "RvY_12615"; transcript_id "RvY_12615.1"; Scaffold007 rebuild transcript 2135926 2139464 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; gene_name "CHROMO"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; CDD "Chromatin organization modifier domain."; Scaffold007 rebuild exon 2135926 2136600 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; Scaffold007 rebuild exon 2136907 2137325 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; Scaffold007 rebuild exon 2137509 2137706 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; Scaffold007 rebuild exon 2137849 2138332 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; Scaffold007 rebuild exon 2138730 2138906 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; Scaffold007 rebuild exon 2138982 2139464 . - . gene_id "RvY_12616"; transcript_id "RvY_12616.1"; Scaffold007 rebuild transcript 2141469 2141660 . + . gene_id "RvY_12617"; transcript_id "RvY_12617.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2141469 2141660 . + . gene_id "RvY_12617"; transcript_id "RvY_12617.1"; Scaffold007 rebuild transcript 2154165 2159025 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; gene_name "pp-GalNAc-T"; annotation "(1)putative Polypeptide N-acetylgalactosaminyltransferase 5(2)putative Probable N-acetylgalactosaminyltransferase 9"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[RicinB_lectin_2] Ricin-type beta-trefoil lectin domain-like|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "(1)EC2.4.1.41(2)EC2.4.1.-"; similar_genes "(1)GALT5_CAEEL(e-value:4.7e-32;bit-score:136.0)(2)GALT9_CAEEL(e-value:3.5e-28;bit-score:123.0)"; Scaffold007 rebuild exon 2154165 2154517 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2154929 2155095 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2155156 2155333 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2155490 2155693 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2156149 2156240 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2156316 2156341 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2156426 2156480 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2157140 2157285 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2157361 2157600 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2157702 2157839 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild exon 2158894 2159025 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.1"; Scaffold007 rebuild transcript 2154165 2159025 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; gene_name "pp-GalNAc-T"; annotation "(1)putative Polypeptide N-acetylgalactosaminyltransferase 5(2)putative Probable N-acetylgalactosaminyltransferase 9"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[RicinB_lectin_2] Ricin-type beta-trefoil lectin domain-like|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "(1)EC2.4.1.41(2)EC2.4.1.-"; similar_genes "(1)GALT5_CAEEL(e-value:4.7e-32;bit-score:136.0)(2)GALT9_CAEEL(e-value:3.5e-28;bit-score:123.0)"; Scaffold007 rebuild exon 2154165 2154517 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2154929 2155095 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2155156 2155333 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2155850 2156050 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2156149 2156240 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2156316 2156341 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2156426 2156480 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2157140 2157285 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2157361 2157600 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2157702 2157839 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild exon 2158894 2159025 . + . gene_id "RvY_12618"; transcript_id "RvY_12618.2"; Scaffold007 rebuild transcript 2161336 2163537 . - . gene_id "RvY_12619"; transcript_id "RvY_12619.1"; gene_name "eukary_SO_Moco"; annotation "hypothetical protein."; Pfam "[Mo-co_dimer] Mo-co oxidoreductase dimerisation domain|[Oxidored_molyb] Oxidoreductase molybdopterin binding domain"; CDD "molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate."; EC "EC1.8.3.1"; similar_genes "SUOX_ARATH(e-value:8.1e-15;bit-score:78.0)"; Scaffold007 rebuild exon 2161336 2161475 . - . gene_id "RvY_12619"; transcript_id "RvY_12619.1"; Scaffold007 rebuild exon 2162181 2162740 . - . gene_id "RvY_12619"; transcript_id "RvY_12619.1"; Scaffold007 rebuild exon 2162927 2163537 . - . gene_id "RvY_12619"; transcript_id "RvY_12619.1"; Scaffold007 rebuild transcript 2165624 2165872 . + . gene_id "RvY_12620"; transcript_id "RvY_12620.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2165624 2165872 . + . gene_id "RvY_12620"; transcript_id "RvY_12620.1"; Scaffold007 rebuild transcript 2166921 2167175 . - . gene_id "RvY_12621"; transcript_id "RvY_12621.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2166921 2167175 . - . gene_id "RvY_12621"; transcript_id "RvY_12621.1"; Scaffold007 rebuild transcript 2167113 2180828 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2167113 2167226 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2169400 2170247 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2170851 2171710 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2174692 2175072 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2175423 2176226 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2176705 2176939 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2177351 2177655 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild exon 2178325 2180828 . + . gene_id "RvY_12622"; transcript_id "RvY_12622.1"; Scaffold007 rebuild transcript 2170480 2171009 . - . gene_id "RvY_12623"; transcript_id "RvY_12623.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2170480 2170550 . - . gene_id "RvY_12623"; transcript_id "RvY_12623.1"; Scaffold007 rebuild exon 2170892 2171009 . - . gene_id "RvY_12623"; transcript_id "RvY_12623.1"; Scaffold007 rebuild transcript 2173972 2174259 . - . gene_id "RvY_12624"; transcript_id "RvY_12624.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2173972 2174259 . - . gene_id "RvY_12624"; transcript_id "RvY_12624.1"; Scaffold007 rebuild transcript 2181085 2182158 . - . gene_id "RvY_12625"; transcript_id "RvY_12625.1"; gene_name "RF-4"; annotation "ribosome recycling factor"; Pfam "[RRF] Ribosome recycling factor"; CDD "Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are ""recycled"" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species."; KO "K02838"; Scaffold007 rebuild exon 2181085 2181165 . - . gene_id "RvY_12625"; transcript_id "RvY_12625.1"; Scaffold007 rebuild exon 2181433 2181589 . - . gene_id "RvY_12625"; transcript_id "RvY_12625.1"; Scaffold007 rebuild exon 2181656 2181866 . - . gene_id "RvY_12625"; transcript_id "RvY_12625.1"; Scaffold007 rebuild exon 2182092 2182158 . - . gene_id "RvY_12625"; transcript_id "RvY_12625.1"; Scaffold007 rebuild transcript 2183129 2183797 . + . gene_id "RvY_12626"; transcript_id "RvY_12626.1"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; Scaffold007 rebuild exon 2183129 2183797 . + . gene_id "RvY_12626"; transcript_id "RvY_12626.1"; Scaffold007 rebuild transcript 2183268 2183828 . + . gene_id "RvY_12626"; transcript_id "RvY_12626.2"; annotation "hypothetical protein."; Pfam "[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; Scaffold007 rebuild exon 2183268 2183828 . + . gene_id "RvY_12626"; transcript_id "RvY_12626.2"; Scaffold007 rebuild transcript 2184545 2187266 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; gene_name "RhaT"; annotation "hypothetical protein."; CDD "Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]"; Scaffold007 rebuild exon 2184545 2184800 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2184869 2185006 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2185578 2185776 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2185858 2185965 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2186082 2186301 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2186374 2186502 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2186586 2186778 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2186910 2186999 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild exon 2187067 2187266 . + . gene_id "RvY_12627"; transcript_id "RvY_12627.1"; Scaffold007 rebuild transcript 2187968 2188540 . + . gene_id "RvY_12628"; transcript_id "RvY_12628.1"; gene_name "GT8_Glycogenin"; annotation "hypothetical protein."; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases."; Scaffold007 rebuild exon 2187968 2188540 . + . gene_id "RvY_12628"; transcript_id "RvY_12628.1"; Scaffold007 rebuild transcript 2188549 2188836 . + . gene_id "RvY_12629"; transcript_id "RvY_12629.1"; gene_name "GT8_Glycogenin"; annotation "hypothetical protein."; CDD "Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases."; Scaffold007 rebuild exon 2188549 2188836 . + . gene_id "RvY_12629"; transcript_id "RvY_12629.1"; Scaffold007 rebuild transcript 2189764 2189967 . - . gene_id "RvY_12630"; transcript_id "RvY_12630.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2189764 2189967 . - . gene_id "RvY_12630"; transcript_id "RvY_12630.1"; Scaffold007 rebuild transcript 2191084 2191349 . - . gene_id "RvY_12631"; transcript_id "RvY_12631.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2191084 2191133 . - . gene_id "RvY_12631"; transcript_id "RvY_12631.1"; Scaffold007 rebuild exon 2191247 2191349 . - . gene_id "RvY_12631"; transcript_id "RvY_12631.1"; Scaffold007 rebuild transcript 2191315 2194820 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold007 rebuild exon 2191315 2191390 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.1"; Scaffold007 rebuild exon 2191606 2192174 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.1"; Scaffold007 rebuild exon 2192435 2192538 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.1"; Scaffold007 rebuild exon 2194039 2194328 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.1"; Scaffold007 rebuild exon 2194450 2194820 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.1"; Scaffold007 rebuild transcript 2192333 2194820 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold007 rebuild exon 2192333 2192347 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.2"; Scaffold007 rebuild exon 2192435 2192538 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.2"; Scaffold007 rebuild exon 2194039 2194328 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.2"; Scaffold007 rebuild exon 2194450 2194820 . + . gene_id "RvY_12632"; transcript_id "RvY_12632.2"; Scaffold007 rebuild transcript 2195467 2196519 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2195467 2195523 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.1"; Scaffold007 rebuild exon 2195611 2195861 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.1"; Scaffold007 rebuild exon 2195966 2196098 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.1"; Scaffold007 rebuild exon 2196175 2196350 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.1"; Scaffold007 rebuild exon 2196435 2196519 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.1"; Scaffold007 rebuild transcript 2195467 2196519 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2195467 2195523 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.2"; Scaffold007 rebuild exon 2195686 2195861 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.2"; Scaffold007 rebuild exon 2195966 2196098 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.2"; Scaffold007 rebuild exon 2196175 2196350 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.2"; Scaffold007 rebuild exon 2196435 2196519 . + . gene_id "RvY_12633"; transcript_id "RvY_12633.2"; Scaffold007 rebuild transcript 2196976 2198477 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2196976 2197072 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2197149 2197265 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2197327 2197405 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2197501 2197580 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2197668 2197715 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2197788 2197851 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2197927 2197994 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2198087 2198148 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild exon 2198358 2198477 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.1"; Scaffold007 rebuild transcript 2196976 2198477 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2196976 2197072 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2197327 2197405 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2197501 2197580 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2197668 2197715 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2197788 2197851 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2197927 2197994 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2198087 2198148 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild exon 2198358 2198477 . + . gene_id "RvY_12634"; transcript_id "RvY_12634.2"; Scaffold007 rebuild transcript 2198930 2200994 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2198930 2199204 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; Scaffold007 rebuild exon 2199395 2199530 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; Scaffold007 rebuild exon 2199623 2199798 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; Scaffold007 rebuild exon 2200026 2200265 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; Scaffold007 rebuild exon 2200352 2200484 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; Scaffold007 rebuild exon 2200707 2200994 . + . gene_id "RvY_12635"; transcript_id "RvY_12635.1"; Scaffold007 rebuild transcript 2201215 2201430 . + . gene_id "RvY_12636"; transcript_id "RvY_12636.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2201215 2201430 . + . gene_id "RvY_12636"; transcript_id "RvY_12636.1"; Scaffold007 rebuild transcript 2201769 2202903 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2201769 2201813 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; Scaffold007 rebuild exon 2201891 2202092 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; Scaffold007 rebuild exon 2202180 2202252 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; Scaffold007 rebuild exon 2202335 2202467 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; Scaffold007 rebuild exon 2202574 2202749 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; Scaffold007 rebuild exon 2202837 2202903 . + . gene_id "RvY_12637"; transcript_id "RvY_12637.1"; Scaffold007 rebuild transcript 2206062 2206814 . + . gene_id "RvY_12638"; transcript_id "RvY_12638.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2206062 2206167 . + . gene_id "RvY_12638"; transcript_id "RvY_12638.1"; Scaffold007 rebuild exon 2206311 2206506 . + . gene_id "RvY_12638"; transcript_id "RvY_12638.1"; Scaffold007 rebuild exon 2206688 2206814 . + . gene_id "RvY_12638"; transcript_id "RvY_12638.1"; Scaffold007 rebuild transcript 2207470 2208022 . - . gene_id "RvY_12639"; transcript_id "RvY_12639.1"; gene_name "rpmA"; annotation "hypothetical protein."; Pfam "[Ribosomal_L27] Ribosomal L27 protein"; CDD "50S ribosomal protein L27; Validated"; Scaffold007 rebuild exon 2207470 2207673 . - . gene_id "RvY_12639"; transcript_id "RvY_12639.1"; Scaffold007 rebuild exon 2207732 2208022 . - . gene_id "RvY_12639"; transcript_id "RvY_12639.1"; Scaffold007 rebuild transcript 2208405 2210494 . + . gene_id "RvY_12640"; transcript_id "RvY_12640.1"; gene_name "Era"; annotation "hypothetical protein."; Pfam "[FeoB_N] Ferrous iron transport protein B|[AIG1] AIG1 family|[Dynamin_N] Dynamin family|[MMR_HSR1] 50S ribosome-binding GTPase|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA."; Scaffold007 rebuild exon 2208405 2208738 . + . gene_id "RvY_12640"; transcript_id "RvY_12640.1"; Scaffold007 rebuild exon 2208791 2208918 . + . gene_id "RvY_12640"; transcript_id "RvY_12640.1"; Scaffold007 rebuild exon 2209194 2209838 . + . gene_id "RvY_12640"; transcript_id "RvY_12640.1"; Scaffold007 rebuild exon 2210085 2210315 . + . gene_id "RvY_12640"; transcript_id "RvY_12640.1"; Scaffold007 rebuild exon 2210378 2210494 . + . gene_id "RvY_12640"; transcript_id "RvY_12640.1"; Scaffold007 rebuild transcript 2210822 2211892 . + . gene_id "RvY_12641"; transcript_id "RvY_12641.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2210822 2211217 . + . gene_id "RvY_12641"; transcript_id "RvY_12641.1"; Scaffold007 rebuild exon 2211253 2211704 . + . gene_id "RvY_12641"; transcript_id "RvY_12641.1"; Scaffold007 rebuild exon 2211769 2211892 . + . gene_id "RvY_12641"; transcript_id "RvY_12641.1"; Scaffold007 rebuild transcript 2212157 2212348 . - . gene_id "RvY_12642"; transcript_id "RvY_12642.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2212157 2212348 . - . gene_id "RvY_12642"; transcript_id "RvY_12642.1"; Scaffold007 rebuild transcript 2213244 2214462 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2213244 2213346 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.1"; Scaffold007 rebuild exon 2213632 2214244 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.1"; Scaffold007 rebuild exon 2214333 2214462 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.1"; Scaffold007 rebuild transcript 2213150 2213917 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.2"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2213150 2213346 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.2"; Scaffold007 rebuild exon 2213632 2213917 . + . gene_id "RvY_12643"; transcript_id "RvY_12643.2"; Scaffold007 rebuild transcript 2216219 2217184 . + . gene_id "RvY_12644"; transcript_id "RvY_12644.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2216219 2217184 . + . gene_id "RvY_12644"; transcript_id "RvY_12644.1"; Scaffold007 rebuild transcript 2227000 2228418 . + . gene_id "RvY_12645"; transcript_id "RvY_12645.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srw] Serpentine type 7TM GPCR chemoreceptor Srw"; Scaffold007 rebuild exon 2227000 2228418 . + . gene_id "RvY_12645"; transcript_id "RvY_12645.1"; Scaffold007 rebuild transcript 2231260 2231448 . - . gene_id "RvY_12646"; transcript_id "RvY_12646.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2231260 2231448 . - . gene_id "RvY_12646"; transcript_id "RvY_12646.1"; Scaffold007 rebuild transcript 2231895 2237525 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain|[Polysacc_deac_1] Polysaccharide deacetylase"; Scaffold007 rebuild exon 2231895 2232128 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; Scaffold007 rebuild exon 2232188 2232588 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; Scaffold007 rebuild exon 2232704 2234726 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; Scaffold007 rebuild exon 2235088 2235758 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; Scaffold007 rebuild exon 2236887 2237324 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; Scaffold007 rebuild exon 2237438 2237525 . - . gene_id "RvY_12647"; transcript_id "RvY_12647.1"; Scaffold007 rebuild transcript 2239313 2240799 . + . gene_id "RvY_12648"; transcript_id "RvY_12648.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold007 rebuild exon 2239313 2239586 . + . gene_id "RvY_12648"; transcript_id "RvY_12648.1"; Scaffold007 rebuild exon 2239811 2240799 . + . gene_id "RvY_12648"; transcript_id "RvY_12648.1"; Scaffold007 rebuild transcript 2243678 2246770 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; gene_name "LDLa"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain|[Polysacc_deac_1] Polysaccharide deacetylase|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure"; Scaffold007 rebuild exon 2243678 2243765 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2243892 2244107 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2244595 2244702 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2244770 2244963 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2245045 2245157 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2245249 2245302 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2245489 2245697 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2245792 2245933 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2246137 2246271 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2246355 2246614 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild exon 2246706 2246770 . + . gene_id "RvY_12649"; transcript_id "RvY_12649.1"; Scaffold007 rebuild transcript 2249807 2252122 . + . gene_id "RvY_12650"; transcript_id "RvY_12650.1"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold007 rebuild exon 2249807 2249861 . + . gene_id "RvY_12650"; transcript_id "RvY_12650.1"; Scaffold007 rebuild exon 2250271 2250471 . + . gene_id "RvY_12650"; transcript_id "RvY_12650.1"; Scaffold007 rebuild exon 2250595 2250723 . + . gene_id "RvY_12650"; transcript_id "RvY_12650.1"; Scaffold007 rebuild exon 2250825 2251161 . + . gene_id "RvY_12650"; transcript_id "RvY_12650.1"; Scaffold007 rebuild exon 2251351 2252122 . + . gene_id "RvY_12650"; transcript_id "RvY_12650.1"; Scaffold007 rebuild transcript 2254458 2256832 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; gene_name "LDLa"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure"; Scaffold007 rebuild exon 2254458 2255268 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; Scaffold007 rebuild exon 2255458 2255632 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; Scaffold007 rebuild exon 2255714 2255860 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; Scaffold007 rebuild exon 2255987 2256145 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; Scaffold007 rebuild exon 2256363 2256623 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; Scaffold007 rebuild exon 2256778 2256832 . - . gene_id "RvY_12651"; transcript_id "RvY_12651.1"; Scaffold007 rebuild transcript 2257932 2261958 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; gene_name "CUL4"; annotation "putative Cullin-4B"; Pfam "[Cullin] Cullin family|[Cullin_Nedd8] Cullin protein neddylation domain"; KO "K10609"; similar_genes "CUL4B_HUMAN(e-value:4.4e-41;bit-score:166.0)"; Scaffold007 rebuild exon 2257932 2258110 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2258225 2258294 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2258484 2258900 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2259234 2259526 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2259793 2260237 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2260590 2260853 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2260913 2261194 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild exon 2261437 2261958 . - . gene_id "RvY_12652"; transcript_id "RvY_12652.1"; Scaffold007 rebuild transcript 2262677 2265362 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; gene_name "SPO11"; annotation "meiotic recombination protein SPO11"; Pfam "[TP6A_N] Type IIB DNA topoisomerase"; CDD "DNA topoisomerase VI subunit A; Provisional"; KO "K10878"; similar_genes "SPO11_ARATH(e-value:2.7e-11;bit-score:67.0)"; Scaffold007 rebuild exon 2262677 2263161 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2263230 2263435 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2263517 2263583 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2263946 2264141 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2264213 2264362 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2264470 2264569 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2264855 2264892 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2264978 2265160 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild exon 2265243 2265362 . + . gene_id "RvY_12653"; transcript_id "RvY_12653.1"; Scaffold007 rebuild transcript 2265910 2269238 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain|[Polysacc_deac_1] Polysaccharide deacetylase"; Scaffold007 rebuild exon 2265910 2266113 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; Scaffold007 rebuild exon 2266311 2266371 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; Scaffold007 rebuild exon 2266737 2267042 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; Scaffold007 rebuild exon 2267485 2267866 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; Scaffold007 rebuild exon 2268257 2268694 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; Scaffold007 rebuild exon 2268995 2269238 . + . gene_id "RvY_12654"; transcript_id "RvY_12654.1"; Scaffold007 rebuild transcript 2270563 2271165 . - . gene_id "RvY_12655"; transcript_id "RvY_12655.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2270563 2271165 . - . gene_id "RvY_12655"; transcript_id "RvY_12655.1"; Scaffold007 rebuild transcript 2271744 2272329 . + . gene_id "RvY_12656"; transcript_id "RvY_12656.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2271744 2271901 . + . gene_id "RvY_12656"; transcript_id "RvY_12656.1"; Scaffold007 rebuild exon 2272062 2272329 . + . gene_id "RvY_12656"; transcript_id "RvY_12656.1"; Scaffold007 rebuild transcript 2274233 2276045 . - . gene_id "RvY_12657"; transcript_id "RvY_12657.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold007 rebuild exon 2274233 2274757 . - . gene_id "RvY_12657"; transcript_id "RvY_12657.1"; Scaffold007 rebuild exon 2274809 2274872 . - . gene_id "RvY_12657"; transcript_id "RvY_12657.1"; Scaffold007 rebuild exon 2275192 2276045 . - . gene_id "RvY_12657"; transcript_id "RvY_12657.1"; Scaffold007 rebuild transcript 2277677 2277955 . + . gene_id "RvY_12658"; transcript_id "RvY_12658.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2277677 2277955 . + . gene_id "RvY_12658"; transcript_id "RvY_12658.1"; Scaffold007 rebuild transcript 2279192 2281170 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; gene_name "KAR"; annotation "beta-keto reductase [EC:1.1.1.-]"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.1.-|EC1.1.1.62"; KO "K10251"; similar_genes "DHB12_ANAPL(e-value:2.0e-11;bit-score:67.0)"; Scaffold007 rebuild exon 2279192 2279495 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2279550 2279596 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2279790 2279865 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2279951 2280064 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2280166 2280233 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2280329 2280556 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2280888 2281040 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild exon 2281126 2281170 . + . gene_id "RvY_12659"; transcript_id "RvY_12659.1"; Scaffold007 rebuild transcript 2279978 2280274 . - . gene_id "RvY_12660"; transcript_id "RvY_12660.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2279978 2280274 . - . gene_id "RvY_12660"; transcript_id "RvY_12660.1"; Scaffold007 rebuild transcript 2281548 2282655 . - . gene_id "RvY_12661"; transcript_id "RvY_12661.1"; gene_name "TFIID9"; annotation "transcription initiation factor TFIID subunit D9"; Pfam "[TAFII28] hTAFII28-like protein conserved region"; CDD "hTAFII28-like protein conserved region. The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C-terminal of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3."; KO "K03135"; similar_genes "TAF11_MOUSE(e-value:1.6e-13;bit-score:74.0)"; Scaffold007 rebuild exon 2281548 2282016 . - . gene_id "RvY_12661"; transcript_id "RvY_12661.1"; Scaffold007 rebuild exon 2282237 2282655 . - . gene_id "RvY_12661"; transcript_id "RvY_12661.1"; Scaffold007 rebuild transcript 2284355 2287674 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; gene_name "YARS"; annotation "putative Probable tyrosyl-tRNA synthetase, mitochondrial"; Pfam "[tRNA-synt_1b] tRNA synthetases class I (W and Y)"; CDD "tyrosyl-tRNA synthetase; Validated"; EC "EC6.1.1.1"; KO "K01866"; similar_genes "SYYM_DROME(e-value:2.3e-29;bit-score:127.0)"; Scaffold007 rebuild exon 2284355 2284503 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2284564 2284635 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2285598 2285673 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2285737 2285912 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2285995 2286096 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2286338 2286452 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2286514 2286702 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2286772 2286937 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2287197 2287385 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2287445 2287570 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild exon 2287637 2287674 . + . gene_id "RvY_12662"; transcript_id "RvY_12662.1"; Scaffold007 rebuild transcript 2287868 2288307 . - . gene_id "RvY_12663"; transcript_id "RvY_12663.1"; gene_name "Mitoc_L55"; annotation "hypothetical protein."; Pfam "[Mitoc_L55] Mitochondrial ribosomal protein L55"; CDD "Mitochondrial ribosomal protein L55. Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins."; similar_genes "RM55_DROME(e-value:4.9e-19;bit-score:92.0)"; Scaffold007 rebuild exon 2287868 2288014 . - . gene_id "RvY_12663"; transcript_id "RvY_12663.1"; Scaffold007 rebuild exon 2288077 2288307 . - . gene_id "RvY_12663"; transcript_id "RvY_12663.1"; Scaffold007 rebuild transcript 2288721 2291060 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; gene_name "DPH2"; annotation "hypothetical protein."; Pfam "[Diphthamide_syn] Putative diphthamide synthesis protein"; CDD "diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin."; similar_genes "DPH2_DANRE(e-value:5.0e-23;bit-score:106.0)"; Scaffold007 rebuild exon 2288721 2288873 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild exon 2288983 2289095 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild exon 2289229 2289452 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild exon 2289513 2289834 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild exon 2290037 2290374 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild exon 2290552 2290737 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild exon 2290816 2291060 . + . gene_id "RvY_12664"; transcript_id "RvY_12664.1"; Scaffold007 rebuild transcript 2294427 2298851 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; annotation "putative Lysine-specific demethylase 3B"; Pfam "[JmjC] JmjC domain, hydroxylase"; EC "EC1.14.11.-"; KO "K15601"; similar_genes "KDM3B_HUMAN(e-value:1.4e-29;bit-score:127.0)"; Scaffold007 rebuild exon 2294427 2294929 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2295256 2295698 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2295753 2295986 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2296220 2296669 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2296889 2297191 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2297364 2297566 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2297672 2297807 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2297870 2298186 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2298510 2298644 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild exon 2298732 2298851 . + . gene_id "RvY_12665"; transcript_id "RvY_12665.1"; Scaffold007 rebuild transcript 2299317 2301919 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; gene_name "IDH1"; annotation "Isocitrate dehydrogenase [NADP] cytoplasmic"; Pfam "[Iso_dh] Isocitrate/isopropylmalate dehydrogenase"; CDD "isocitrate dehydrogenase; Validated"; EC "EC1.1.1.42"; KO "K00031"; similar_genes "IDHC_RAT(e-value:1.6e-98;bit-score:356.0)"; Scaffold007 rebuild exon 2299317 2299398 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2299472 2299637 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2299701 2299993 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2300294 2300362 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2300441 2300661 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2300729 2300889 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2301145 2301181 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2301263 2301312 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2301393 2301499 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2301561 2301600 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild exon 2301757 2301919 . - . gene_id "RvY_12666"; transcript_id "RvY_12666.1"; Scaffold007 rebuild transcript 2302444 2303716 . + . gene_id "RvY_12667"; transcript_id "RvY_12667.1"; gene_name "PRPH"; annotation "peripherin"; Pfam "[Tetraspannin] Tetraspanin family"; CDD "Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the ""tetraspanin web"". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to hereditary retinal dystrophies, which typically exhibit a wide phenotypic spectrum."; KO "K07607"; Scaffold007 rebuild exon 2302444 2302872 . + . gene_id "RvY_12667"; transcript_id "RvY_12667.1"; Scaffold007 rebuild exon 2303022 2303155 . + . gene_id "RvY_12667"; transcript_id "RvY_12667.1"; Scaffold007 rebuild exon 2303335 2303716 . + . gene_id "RvY_12667"; transcript_id "RvY_12667.1"; Scaffold007 rebuild transcript 2303917 2306800 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2303917 2304339 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; Scaffold007 rebuild exon 2304490 2304980 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; Scaffold007 rebuild exon 2305296 2305403 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; Scaffold007 rebuild exon 2305486 2306465 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; Scaffold007 rebuild exon 2306547 2306610 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; Scaffold007 rebuild exon 2306719 2306800 . - . gene_id "RvY_12668"; transcript_id "RvY_12668.1"; Scaffold007 rebuild transcript 2308176 2311374 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; annotation "putative Dipeptidyl peptidase 3"; Pfam "[Peptidase_M49] Peptidase family M49"; EC "EC3.4.14.4"; similar_genes "DPP3_HUMAN(e-value:6.0e-45;bit-score:178.0)"; Scaffold007 rebuild exon 2308176 2308420 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2308517 2309288 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2309462 2309592 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2309677 2309885 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2310002 2310043 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2310120 2310513 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2310585 2310855 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2310934 2311067 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild exon 2311155 2311374 . + . gene_id "RvY_12669"; transcript_id "RvY_12669.1"; Scaffold007 rebuild transcript 2311589 2313584 . - . gene_id "RvY_12670"; transcript_id "RvY_12670.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2311589 2311670 . - . gene_id "RvY_12670"; transcript_id "RvY_12670.1"; Scaffold007 rebuild exon 2311746 2311918 . - . gene_id "RvY_12670"; transcript_id "RvY_12670.1"; Scaffold007 rebuild exon 2312002 2312134 . - . gene_id "RvY_12670"; transcript_id "RvY_12670.1"; Scaffold007 rebuild exon 2312233 2313329 . - . gene_id "RvY_12670"; transcript_id "RvY_12670.1"; Scaffold007 rebuild exon 2313534 2313584 . - . gene_id "RvY_12670"; transcript_id "RvY_12670.1"; Scaffold007 rebuild transcript 2314563 2314772 . - . gene_id "RvY_12671"; transcript_id "RvY_12671.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2314563 2314772 . - . gene_id "RvY_12671"; transcript_id "RvY_12671.1"; Scaffold007 rebuild transcript 2314903 2319664 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2314903 2315029 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; Scaffold007 rebuild exon 2315211 2315406 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; Scaffold007 rebuild exon 2315550 2315729 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; Scaffold007 rebuild exon 2318837 2319236 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; Scaffold007 rebuild exon 2319374 2319446 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; Scaffold007 rebuild exon 2319486 2319664 . - . gene_id "RvY_12672"; transcript_id "RvY_12672.1"; Scaffold007 rebuild transcript 2326718 2327233 . + . gene_id "RvY_12673"; transcript_id "RvY_12673.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; Scaffold007 rebuild exon 2326718 2327233 . + . gene_id "RvY_12673"; transcript_id "RvY_12673.1"; Scaffold007 rebuild transcript 2328308 2329549 . + . gene_id "RvY_12674"; transcript_id "RvY_12674.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold007 rebuild exon 2328308 2329549 . + . gene_id "RvY_12674"; transcript_id "RvY_12674.1"; Scaffold007 rebuild transcript 2327610 2328452 . + . gene_id "RvY_12674"; transcript_id "RvY_12674.2"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold007 rebuild exon 2327610 2328452 . + . gene_id "RvY_12674"; transcript_id "RvY_12674.2"; Scaffold007 rebuild transcript 2330866 2332539 . + . gene_id "RvY_12675"; transcript_id "RvY_12675.1"; annotation "hypothetical protein."; Scaffold007 rebuild exon 2330866 2331146 . + . gene_id "RvY_12675"; transcript_id "RvY_12675.1"; Scaffold007 rebuild exon 2331337 2331585 . + . gene_id "RvY_12675"; transcript_id "RvY_12675.1"; Scaffold007 rebuild exon 2331641 2331785 . + . gene_id "RvY_12675"; transcript_id "RvY_12675.1"; Scaffold007 rebuild exon 2331846 2332285 . + . gene_id "RvY_12675"; transcript_id "RvY_12675.1"; Scaffold007 rebuild exon 2332344 2332539 . + . gene_id "RvY_12675"; transcript_id "RvY_12675.1"; Scaffold007 rebuild transcript 2333263 2339255 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; gene_name "NCOR2"; annotation "nuclear receptor co-repressor 2"; Pfam "[Myb_DNA-binding] Myb-like DNA-binding domain|[Myb_DNA-bind_6] Myb-like DNA-binding domain"; KO "K06065"; Scaffold007 rebuild exon 2333263 2333748 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2334102 2334209 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2334316 2334431 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2334597 2334749 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2334825 2334966 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2335073 2335303 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2335575 2335950 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2336267 2336598 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2336785 2336909 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2336973 2337226 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2337500 2337871 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2338011 2338373 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild exon 2338465 2339255 . + . gene_id "RvY_12676"; transcript_id "RvY_12676.1"; Scaffold007 rebuild transcript 2339733 2341887 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; gene_name "NMT"; annotation "phosphoethanolamine N-methyltransferase [EC:2.1.1.103]"; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_PK] AdoMet dependent proline di-methyltransferase|[CMAS] Mycolic acid cyclopropane synthetase|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Ubie_methyltran] ubiE/COQ5 methyltransferase family|[MTS] Methyltransferase small domain|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "phosphoethanolamine N-methyltransferase; Provisional"; EC "EC2.1.1.103"; KO "K05929"; similar_genes "PEAM2_ARATH(e-value:5.8e-24;bit-score:109.0)"; Scaffold007 rebuild exon 2339733 2339960 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2340032 2340163 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2340339 2340551 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2340617 2340880 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2340945 2341069 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2341145 2341284 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2341367 2341552 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold007 rebuild exon 2341685 2341887 . - . gene_id "RvY_12677"; transcript_id "RvY_12677.1"; Scaffold008 cdses transcript 206 595 . + . gene_id "RvY_12678"; transcript_id "RvY_12678.1"; annotation "hypothetical protein."; Scaffold008 cdses exon 206 595 . + . gene_id "RvY_12678"; transcript_id "RvY_12678.1"; Scaffold008 rebuild transcript 1902 2401 . - . gene_id "RvY_12679"; transcript_id "RvY_12679.1"; gene_name "ECM4"; annotation "putative Uncharacterized protein yqjG"; Pfam "[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]"; similar_genes "YQJG_ECOLI(e-value:3.5e-30;bit-score:129.0)"; Scaffold008 rebuild exon 1902 2153 . - . gene_id "RvY_12679"; transcript_id "RvY_12679.1"; Scaffold008 rebuild exon 2294 2401 . - . gene_id "RvY_12679"; transcript_id "RvY_12679.1"; Scaffold008 rebuild transcript 3049 3853 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.1"; gene_name "ECM4"; annotation "hypothetical protein."; Pfam "[GST_N_2] Glutathione S-transferase, N-terminal domain"; CDD "Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]"; similar_genes "(1)YQJG_ECOLI(e-value:6.2e-15;bit-score:79.0)(2)YQJG_ECOLI(e-value:5.3e-12;bit-score:69.0)"; Scaffold008 rebuild exon 3049 3119 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.1"; Scaffold008 rebuild exon 3237 3324 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.1"; Scaffold008 rebuild exon 3407 3477 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.1"; Scaffold008 rebuild exon 3586 3610 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.1"; Scaffold008 rebuild exon 3716 3853 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.1"; Scaffold008 rebuild transcript 3220 3853 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.2"; gene_name "ECM4"; annotation "hypothetical protein."; Pfam "[GST_N_2] Glutathione S-transferase, N-terminal domain"; CDD "Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]"; similar_genes "(1)YQJG_ECOLI(e-value:6.2e-15;bit-score:79.0)(2)YQJG_ECOLI(e-value:5.3e-12;bit-score:69.0)"; Scaffold008 rebuild exon 3220 3324 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.2"; Scaffold008 rebuild exon 3407 3477 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.2"; Scaffold008 rebuild exon 3586 3610 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.2"; Scaffold008 rebuild exon 3716 3853 . - . gene_id "RvY_12680"; transcript_id "RvY_12680.2"; Scaffold008 rebuild transcript 4642 7141 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; annotation "hypothetical protein."; Pfam "[Maelstrom] piRNA pathway germ-plasm component"; Scaffold008 rebuild exon 4642 4920 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 5016 5115 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 5216 5366 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 5435 5478 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 5587 5823 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 5894 5961 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 6059 6141 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 6237 6435 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 6493 6592 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild exon 6690 7141 . + . gene_id "RvY_12681"; transcript_id "RvY_12681.1"; Scaffold008 rebuild transcript 8183 10595 . - . gene_id "RvY_12682"; transcript_id "RvY_12682.1"; gene_name "HSPA1_8"; annotation "Heat shock protein 68"; Pfam "[HSP70] Hsp70 protein|[MreB_Mbl] MreB/Mbl protein"; CDD "heat shock 70 kDa protein; Provisional"; KO "K03283"; similar_genes "HSP68_DROME(e-value:7.3e-262;bit-score:899.0)"; Scaffold008 rebuild exon 8183 8889 . - . gene_id "RvY_12682"; transcript_id "RvY_12682.1"; Scaffold008 rebuild exon 9102 9609 . - . gene_id "RvY_12682"; transcript_id "RvY_12682.1"; Scaffold008 rebuild exon 9798 10097 . - . gene_id "RvY_12682"; transcript_id "RvY_12682.1"; Scaffold008 rebuild exon 10185 10595 . - . gene_id "RvY_12682"; transcript_id "RvY_12682.1"; Scaffold008 rebuild transcript 12370 13888 . - . gene_id "RvY_12683"; transcript_id "RvY_12683.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 12370 12494 . - . gene_id "RvY_12683"; transcript_id "RvY_12683.1"; Scaffold008 rebuild exon 12614 12836 . - . gene_id "RvY_12683"; transcript_id "RvY_12683.1"; Scaffold008 rebuild exon 13028 13335 . - . gene_id "RvY_12683"; transcript_id "RvY_12683.1"; Scaffold008 rebuild exon 13393 13771 . - . gene_id "RvY_12683"; transcript_id "RvY_12683.1"; Scaffold008 rebuild exon 13865 13888 . - . gene_id "RvY_12683"; transcript_id "RvY_12683.1"; Scaffold008 rebuild transcript 14260 14631 . + . gene_id "RvY_12684"; transcript_id "RvY_12684.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 14260 14631 . + . gene_id "RvY_12684"; transcript_id "RvY_12684.1"; Scaffold008 rebuild transcript 14898 16944 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; gene_name "HNRNPABD"; annotation "heterogeneous nuclear ribonucleoprotein A/B/D"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K13044"; Scaffold008 rebuild exon 14898 14986 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; Scaffold008 rebuild exon 15538 15706 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; Scaffold008 rebuild exon 15787 15948 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; Scaffold008 rebuild exon 16064 16198 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; Scaffold008 rebuild exon 16288 16633 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; Scaffold008 rebuild exon 16811 16944 . + . gene_id "RvY_12685"; transcript_id "RvY_12685.1"; Scaffold008 rebuild transcript 17415 18764 . - . gene_id "RvY_12686"; transcript_id "RvY_12686.1"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_14] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat"; Scaffold008 rebuild exon 17415 18133 . - . gene_id "RvY_12686"; transcript_id "RvY_12686.1"; Scaffold008 rebuild exon 18200 18341 . - . gene_id "RvY_12686"; transcript_id "RvY_12686.1"; Scaffold008 rebuild exon 18411 18581 . - . gene_id "RvY_12686"; transcript_id "RvY_12686.1"; Scaffold008 rebuild exon 18642 18764 . - . gene_id "RvY_12686"; transcript_id "RvY_12686.1"; Scaffold008 rebuild transcript 22399 27251 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; gene_name "ae"; annotation "Electrogenic sodium bicarbonate cotransporter 1"; Pfam "[HCO3_cotransp] HCO3- transporter family|[Band_3_cyto] Band 3 cytoplasmic domain"; CDD "anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule."; KO "(1)K13861"; similar_genes "S4A4_MOUSE(e-value:4.9e-72;bit-score:268.0)"; Scaffold008 rebuild exon 22399 22408 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 22543 22651 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 22714 23137 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 23266 23511 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 23591 23838 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 23901 24075 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 24156 24289 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 24615 24711 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 24771 25253 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 25606 25838 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 25911 26094 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 26310 26378 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 26458 26634 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 26716 26847 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 26921 27123 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild exon 27197 27251 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.1"; Scaffold008 rebuild transcript 22399 27251 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; gene_name "ae"; annotation "Electrogenic sodium bicarbonate cotransporter 1"; Pfam "[HCO3_cotransp] HCO3- transporter family|[Band_3_cyto] Band 3 cytoplasmic domain"; CDD "anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule."; KO "(1)K13861"; similar_genes "S4A4_MOUSE(e-value:4.9e-72;bit-score:268.0)"; Scaffold008 rebuild exon 22399 22408 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 22543 22651 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 22714 23026 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 23266 23511 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 23591 23838 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 23901 24075 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 24156 24289 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 24615 24711 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 24771 25253 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 25606 25838 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 25911 26094 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 26310 26378 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 26458 26634 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 26716 26847 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 26921 27123 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild exon 27197 27251 . + . gene_id "RvY_12687"; transcript_id "RvY_12687.2"; Scaffold008 rebuild transcript 27585 29084 . + . gene_id "RvY_12688"; transcript_id "RvY_12688.1"; annotation "hypothetical protein."; Pfam "[Dynein_light] Dynein light chain type 1"; Scaffold008 rebuild exon 27585 28176 . + . gene_id "RvY_12688"; transcript_id "RvY_12688.1"; Scaffold008 rebuild exon 28381 29084 . + . gene_id "RvY_12688"; transcript_id "RvY_12688.1"; Scaffold008 rebuild transcript 28926 29282 . - . gene_id "RvY_12689"; transcript_id "RvY_12689.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 28926 29282 . - . gene_id "RvY_12689"; transcript_id "RvY_12689.1"; Scaffold008 rebuild transcript 29440 30612 . - . gene_id "RvY_12690"; transcript_id "RvY_12690.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 29440 29997 . - . gene_id "RvY_12690"; transcript_id "RvY_12690.1"; Scaffold008 rebuild exon 30064 30212 . - . gene_id "RvY_12690"; transcript_id "RvY_12690.1"; Scaffold008 rebuild exon 30399 30612 . - . gene_id "RvY_12690"; transcript_id "RvY_12690.1"; Scaffold008 rebuild transcript 32662 34812 . - . gene_id "RvY_12691"; transcript_id "RvY_12691.1"; gene_name "CDC_Septin"; annotation "hypothetical protein."; Pfam "[MMR_HSR1] 50S ribosome-binding GTPase|[Septin]"; CDD "CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities."; similar_genes "SEPT4_HUMAN(e-value:5.6e-20;bit-score:95.0)"; Scaffold008 rebuild exon 32662 33350 . - . gene_id "RvY_12691"; transcript_id "RvY_12691.1"; Scaffold008 rebuild exon 33507 33936 . - . gene_id "RvY_12691"; transcript_id "RvY_12691.1"; Scaffold008 rebuild exon 34237 34580 . - . gene_id "RvY_12691"; transcript_id "RvY_12691.1"; Scaffold008 rebuild exon 34650 34812 . - . gene_id "RvY_12691"; transcript_id "RvY_12691.1"; Scaffold008 rebuild transcript 35555 37602 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 35555 35687 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; Scaffold008 rebuild exon 36419 36483 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; Scaffold008 rebuild exon 36569 36679 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; Scaffold008 rebuild exon 36747 36826 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; Scaffold008 rebuild exon 36942 37332 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; Scaffold008 rebuild exon 37402 37602 . + . gene_id "RvY_12692"; transcript_id "RvY_12692.1"; Scaffold008 rebuild transcript 37701 41194 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; gene_name "PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1)[TPR_1] Tetratricopeptide repeat|(1)[PPR] PPR repeat|(1)[TPR_15] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold008 rebuild exon 37701 37784 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 37848 37905 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 37972 38033 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 38217 38309 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 38383 38601 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 38714 39307 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 39365 39475 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 39555 39693 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 39774 39903 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 39983 40048 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 40280 40931 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild exon 41024 41194 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.1"; Scaffold008 rebuild transcript 39422 42044 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; gene_name "PEP_TPR_lipo"; annotation "hypothetical protein."; Pfam "[TPR_2] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|(1)[TPR_1] Tetratricopeptide repeat|(1)[PPR] PPR repeat|(1)[TPR_15] Tetratricopeptide repeat|[Apc3] Anaphase-promoting complex, cyclosome, subunit 3|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat"; CDD "putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator."; Scaffold008 rebuild exon 39422 39475 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 39555 39693 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 39774 39903 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 39983 40048 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 40280 40931 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 41024 41155 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 41221 41334 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 41399 41862 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild exon 42032 42044 . + . gene_id "RvY_12693"; transcript_id "RvY_12693.2"; Scaffold008 rebuild transcript 42462 50628 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; gene_name "STK17"; annotation "serine/threonine kinase 17 [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.1"; KO "K08804"; similar_genes "ST17A_RABIT(e-value:1.1e-24;bit-score:111.0)"; Scaffold008 rebuild exon 42462 42906 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; Scaffold008 rebuild exon 42998 43226 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; Scaffold008 rebuild exon 43306 43441 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; Scaffold008 rebuild exon 43543 43681 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; Scaffold008 rebuild exon 43866 44078 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; Scaffold008 rebuild exon 50519 50628 . - . gene_id "RvY_12694"; transcript_id "RvY_12694.1"; Scaffold008 rebuild transcript 51616 51864 . + . gene_id "RvY_12695"; transcript_id "RvY_12695.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 51616 51864 . + . gene_id "RvY_12695"; transcript_id "RvY_12695.1"; Scaffold008 rebuild transcript 52827 54515 . - . gene_id "RvY_12696"; transcript_id "RvY_12696.1"; annotation "hypothetical protein."; similar_genes "INSM1_BOVIN(e-value:1.1e-16;bit-score:85.0)"; Scaffold008 rebuild exon 52827 53714 . - . gene_id "RvY_12696"; transcript_id "RvY_12696.1"; Scaffold008 rebuild exon 53871 54515 . - . gene_id "RvY_12696"; transcript_id "RvY_12696.1"; Scaffold008 rebuild transcript 56259 58069 . - . gene_id "RvY_12697"; transcript_id "RvY_12697.1"; annotation "hypothetical protein."; Pfam "[Arrestin_N] Arrestin (or S-antigen), N-terminal domain|[Arrestin_C] Arrestin (or S-antigen), C-terminal domain"; Scaffold008 rebuild exon 56259 56429 . - . gene_id "RvY_12697"; transcript_id "RvY_12697.1"; Scaffold008 rebuild exon 56548 56913 . - . gene_id "RvY_12697"; transcript_id "RvY_12697.1"; Scaffold008 rebuild exon 56991 57132 . - . gene_id "RvY_12697"; transcript_id "RvY_12697.1"; Scaffold008 rebuild exon 57681 58069 . - . gene_id "RvY_12697"; transcript_id "RvY_12697.1"; Scaffold008 rebuild transcript 60566 62208 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; gene_name "(1,3)mnmE(2)trmE"; annotation "(1)putative tRNA modification GTPase mnmE(2,3)putative tRNA modification GTPase GTPBP3, mitochondrial"; Pfam "[FeoB_N] Ferrous iron transport protein B|[MMR_HSR1] 50S ribosome-binding GTPase|(1,2)[GTPase_Cys_C] Catalytic cysteine-containing C-terminus of GTPase, MnmE|[TrmE_N] GTP-binding protein TrmE N-terminus"; CDD "tRNA modification GTPase TrmE; Reviewed"; EC "(1)EC3.6.-.-"; KO "(1,3)K03650"; similar_genes "(1)MNME_BRAJA(e-value:3.6e-32;bit-score:136.0)(2)GTPB3_DANRE(e-value:1.2e-28;bit-score:124.0)(3)GTPB3_DANRE(e-value:3.3e-39;bit-score:159.0)"; Scaffold008 rebuild exon 60566 60572 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; Scaffold008 rebuild exon 60636 60771 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; Scaffold008 rebuild exon 60842 60995 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; Scaffold008 rebuild exon 61133 61205 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; Scaffold008 rebuild exon 61267 61410 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; Scaffold008 rebuild exon 61508 62208 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.1"; Scaffold008 rebuild transcript 60566 62208 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; gene_name "(1,3)mnmE(2)trmE"; annotation "(1)putative tRNA modification GTPase mnmE(2,3)putative tRNA modification GTPase GTPBP3, mitochondrial"; Pfam "[FeoB_N] Ferrous iron transport protein B|[MMR_HSR1] 50S ribosome-binding GTPase|(1,2)[GTPase_Cys_C] Catalytic cysteine-containing C-terminus of GTPase, MnmE|[TrmE_N] GTP-binding protein TrmE N-terminus"; CDD "tRNA modification GTPase TrmE; Reviewed"; EC "(1)EC3.6.-.-"; KO "(1,3)K03650"; similar_genes "(1)MNME_BRAJA(e-value:3.6e-32;bit-score:136.0)(2)GTPB3_DANRE(e-value:1.2e-28;bit-score:124.0)(3)GTPB3_DANRE(e-value:3.3e-39;bit-score:159.0)"; Scaffold008 rebuild exon 60566 60572 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; Scaffold008 rebuild exon 60636 60771 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; Scaffold008 rebuild exon 60938 60995 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; Scaffold008 rebuild exon 61133 61205 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; Scaffold008 rebuild exon 61267 61410 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; Scaffold008 rebuild exon 61508 62208 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.2"; Scaffold008 rebuild transcript 60293 61780 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; gene_name "(1,3)mnmE(2)trmE"; annotation "(1)putative tRNA modification GTPase mnmE(2,3)putative tRNA modification GTPase GTPBP3, mitochondrial"; Pfam "[FeoB_N] Ferrous iron transport protein B|[MMR_HSR1] 50S ribosome-binding GTPase|(1,2)[GTPase_Cys_C] Catalytic cysteine-containing C-terminus of GTPase, MnmE|[TrmE_N] GTP-binding protein TrmE N-terminus"; CDD "tRNA modification GTPase TrmE; Reviewed"; EC "(1)EC3.6.-.-"; KO "(1,3)K03650"; similar_genes "(1)MNME_BRAJA(e-value:3.6e-32;bit-score:136.0)(2)GTPB3_DANRE(e-value:1.2e-28;bit-score:124.0)(3)GTPB3_DANRE(e-value:3.3e-39;bit-score:159.0)"; Scaffold008 rebuild exon 60293 60572 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild exon 60636 60771 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild exon 60842 60995 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild exon 61133 61205 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild exon 61267 61410 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild exon 61508 61651 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild exon 61770 61780 . + . gene_id "RvY_12698"; transcript_id "RvY_12698.3"; Scaffold008 rebuild transcript 63132 64360 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.1"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase|(1,2)[Propep_M14] Carboxypeptidase activation peptide"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; Scaffold008 rebuild exon 63132 63283 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.1"; Scaffold008 rebuild exon 63351 63858 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.1"; Scaffold008 rebuild exon 63932 64147 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.1"; Scaffold008 rebuild exon 64211 64360 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.1"; Scaffold008 rebuild transcript 63132 64174 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.2"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase|(1,2)[Propep_M14] Carboxypeptidase activation peptide"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; Scaffold008 rebuild exon 63132 63283 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.2"; Scaffold008 rebuild exon 63351 63858 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.2"; Scaffold008 rebuild exon 63932 64174 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.2"; Scaffold008 rebuild transcript 64193 65141 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.3"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase|(1,2)[Propep_M14] Carboxypeptidase activation peptide"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; Scaffold008 rebuild exon 64193 64255 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.3"; Scaffold008 rebuild exon 64321 64729 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.3"; Scaffold008 rebuild exon 64924 65141 . + . gene_id "RvY_12699"; transcript_id "RvY_12699.3"; Scaffold008 rebuild transcript 65274 66021 . - . gene_id "RvY_12700"; transcript_id "RvY_12700.1"; gene_name "UMP_CMP_kin_fam"; annotation "hypothetical protein."; Pfam "[ADK] Adenylate kinase|[AAA_17] AAA domain"; CDD "UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic."; EC "EC2.7.4.14"; similar_genes "KCY_XENTR(e-value:7.8e-09;bit-score:58.0)"; Scaffold008 rebuild exon 65274 65460 . - . gene_id "RvY_12700"; transcript_id "RvY_12700.1"; Scaffold008 rebuild exon 65618 66021 . - . gene_id "RvY_12700"; transcript_id "RvY_12700.1"; Scaffold008 rebuild transcript 66860 68772 . + . gene_id "RvY_12701"; transcript_id "RvY_12701.1"; annotation "hypothetical protein."; Pfam "[Glyco_tranf_2_4] Glycosyl transferase family 2|[Glyco_transf_92] Glycosyltransferase family 92"; Scaffold008 rebuild exon 66860 67618 . + . gene_id "RvY_12701"; transcript_id "RvY_12701.1"; Scaffold008 rebuild exon 67696 68217 . + . gene_id "RvY_12701"; transcript_id "RvY_12701.1"; Scaffold008 rebuild exon 68297 68408 . + . gene_id "RvY_12701"; transcript_id "RvY_12701.1"; Scaffold008 rebuild exon 68540 68772 . + . gene_id "RvY_12701"; transcript_id "RvY_12701.1"; Scaffold008 rebuild transcript 68795 71265 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; gene_name "AGXT2"; annotation "putative Alanine--glyoxylate aminotransferase 2, mitochondrial"; Pfam "[Aminotran_3] Aminotransferase class-III"; CDD "Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation."; EC "EC2.6.1.40|EC2.6.1.44"; KO "K00827"; similar_genes "AGT2_MOUSE(e-value:7.2e-35;bit-score:145.0)"; Scaffold008 rebuild exon 68795 68905 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 68965 69213 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 69280 69401 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 69480 69506 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 69573 69738 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 69869 70003 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 70145 70304 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 70370 70464 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 70523 70646 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 70726 70805 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 70865 70975 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 71068 71183 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild exon 71250 71265 . - . gene_id "RvY_12702"; transcript_id "RvY_12702.1"; Scaffold008 rebuild transcript 72135 73498 . - . gene_id "RvY_12703"; transcript_id "RvY_12703.1"; gene_name "RnhA"; annotation "hypothetical protein."; Pfam "[RNase_H] RNase H|[Cauli_VI] Caulimovirus viroplasmin"; CDD "Ribonuclease HI [DNA replication, recombination, and repair]"; Scaffold008 rebuild exon 72135 72197 . - . gene_id "RvY_12703"; transcript_id "RvY_12703.1"; Scaffold008 rebuild exon 72302 72426 . - . gene_id "RvY_12703"; transcript_id "RvY_12703.1"; Scaffold008 rebuild exon 72685 72927 . - . gene_id "RvY_12703"; transcript_id "RvY_12703.1"; Scaffold008 rebuild exon 73015 73268 . - . gene_id "RvY_12703"; transcript_id "RvY_12703.1"; Scaffold008 rebuild exon 73446 73498 . - . gene_id "RvY_12703"; transcript_id "RvY_12703.1"; Scaffold008 rebuild transcript 74072 74940 . + . gene_id "RvY_12704"; transcript_id "RvY_12704.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 74072 74365 . + . gene_id "RvY_12704"; transcript_id "RvY_12704.1"; Scaffold008 rebuild exon 74462 74585 . + . gene_id "RvY_12704"; transcript_id "RvY_12704.1"; Scaffold008 rebuild exon 74693 74940 . + . gene_id "RvY_12704"; transcript_id "RvY_12704.1"; Scaffold008 rebuild transcript 75218 77044 . - . gene_id "RvY_12705"; transcript_id "RvY_12705.1"; gene_name "UMPS"; annotation "uridine monophosphate synthetase [EC:2.4.2.10 4.1.1.23]"; Pfam "[Pribosyltran] Phosphoribosyl transferase domain|[OMPdecase] Orotidine 5'-phosphate decarboxylase / HUMPS family"; EC "EC2.4.2.10|EC4.1.1.23"; KO "K13421"; similar_genes "PYRF_ASPFU(e-value:6.7e-25;bit-score:112.0)"; Scaffold008 rebuild exon 75218 75567 . - . gene_id "RvY_12705"; transcript_id "RvY_12705.1"; Scaffold008 rebuild exon 75760 76353 . - . gene_id "RvY_12705"; transcript_id "RvY_12705.1"; Scaffold008 rebuild exon 76528 77044 . - . gene_id "RvY_12705"; transcript_id "RvY_12705.1"; Scaffold008 rebuild transcript 77899 78102 . + . gene_id "RvY_12706"; transcript_id "RvY_12706.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 77899 78102 . + . gene_id "RvY_12706"; transcript_id "RvY_12706.1"; Scaffold008 rebuild transcript 78245 78991 . - . gene_id "RvY_12707"; transcript_id "RvY_12707.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 78245 78435 . - . gene_id "RvY_12707"; transcript_id "RvY_12707.1"; Scaffold008 rebuild exon 78583 78991 . - . gene_id "RvY_12707"; transcript_id "RvY_12707.1"; Scaffold008 rebuild transcript 79443 82997 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; gene_name "NCBP1"; annotation "putative Nuclear cap-binding protein subunit 1"; Pfam "[MIF4G_like_2] MIF4G like|[MIF4G_like] MIF4G like|[MIF4G]"; KO "K12882"; similar_genes "NCBP1_CHICK(e-value:2.1e-34;bit-score:143.0)"; Scaffold008 rebuild exon 79443 79503 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 79580 79707 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 79768 79868 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 79989 80145 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 80225 80332 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 80416 80607 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 80763 81319 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 81405 81646 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 81723 81839 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 81939 82035 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 82150 82558 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 82637 82750 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild exon 82884 82997 . + . gene_id "RvY_12708"; transcript_id "RvY_12708.1"; Scaffold008 rebuild transcript 83187 83643 . - . gene_id "RvY_12709"; transcript_id "RvY_12709.1"; annotation "hypothetical protein."; Pfam "[DUF1674]"; similar_genes "CF057_HUMAN(e-value:2.0e-11;bit-score:67.0)"; Scaffold008 rebuild exon 83187 83471 . - . gene_id "RvY_12709"; transcript_id "RvY_12709.1"; Scaffold008 rebuild exon 83542 83643 . - . gene_id "RvY_12709"; transcript_id "RvY_12709.1"; Scaffold008 rebuild transcript 83944 84246 . - . gene_id "RvY_12710"; transcript_id "RvY_12710.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 83944 84246 . - . gene_id "RvY_12710"; transcript_id "RvY_12710.1"; Scaffold008 rebuild transcript 84529 86374 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; gene_name "hnRNP-R-Q"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain."; similar_genes "RBM47_HUMAN(e-value:8.0e-13;bit-score:72.0)"; Scaffold008 rebuild exon 84529 84985 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; Scaffold008 rebuild exon 85062 85333 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; Scaffold008 rebuild exon 85409 85586 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; Scaffold008 rebuild exon 85646 85920 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; Scaffold008 rebuild exon 85984 86079 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; Scaffold008 rebuild exon 86138 86374 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.1"; Scaffold008 rebuild transcript 84529 86374 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.2"; gene_name "hnRNP-R-Q"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain."; similar_genes "RBM47_HUMAN(e-value:8.0e-13;bit-score:72.0)"; Scaffold008 rebuild exon 84529 84985 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.2"; Scaffold008 rebuild exon 85062 85333 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.2"; Scaffold008 rebuild exon 85409 85586 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.2"; Scaffold008 rebuild exon 85646 85920 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.2"; Scaffold008 rebuild exon 86138 86374 . + . gene_id "RvY_12711"; transcript_id "RvY_12711.2"; Scaffold008 rebuild transcript 87164 89156 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; KO "K14757"; Scaffold008 rebuild exon 87164 87329 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 87403 87428 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 87511 87564 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 87659 87751 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 87812 87901 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 87981 88037 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 88103 88180 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 88272 88327 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 88454 88499 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 88610 88672 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 88765 88966 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild exon 89032 89156 . + . gene_id "RvY_12712"; transcript_id "RvY_12712.1"; Scaffold008 rebuild transcript 89657 91438 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; similar_genes "CALB2_HUMAN(e-value:6.6e-06;bit-score:49.0)"; Scaffold008 rebuild exon 89657 89810 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 89896 89972 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 90055 90147 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 90220 90306 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 90395 90451 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 90522 90611 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 90701 90802 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 90874 90936 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 91011 91227 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild exon 91299 91438 . + . gene_id "RvY_12713"; transcript_id "RvY_12713.1"; Scaffold008 rebuild transcript 91539 92654 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.1"; gene_name "(1)RNASEH1(2)RnaseH"; annotation "(1)putative Ribonuclease H1(2)hypothetical protein."; Pfam "[Cauli_VI] Caulimovirus viroplasmin|[RNase_H] RNase H"; CDD "RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription."; EC "EC3.1.26.4"; KO "(1)K03469"; similar_genes "(1)RNH1_RAT(e-value:2.4e-31;bit-score:133.0)(2)RNH1_RAT(e-value:1.3e-19;bit-score:94.0)"; Scaffold008 rebuild exon 91539 91619 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.1"; Scaffold008 rebuild exon 91720 91844 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.1"; Scaffold008 rebuild exon 91949 92538 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.1"; Scaffold008 rebuild exon 92596 92654 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.1"; Scaffold008 rebuild transcript 91736 92654 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.2"; gene_name "(1)RNASEH1(2)RnaseH"; annotation "(1)putative Ribonuclease H1(2)hypothetical protein."; Pfam "[Cauli_VI] Caulimovirus viroplasmin|[RNase_H] RNase H"; CDD "RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription."; EC "EC3.1.26.4"; KO "(1)K03469"; similar_genes "(1)RNH1_RAT(e-value:2.4e-31;bit-score:133.0)(2)RNH1_RAT(e-value:1.3e-19;bit-score:94.0)"; Scaffold008 rebuild exon 91736 91844 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.2"; Scaffold008 rebuild exon 91945 92538 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.2"; Scaffold008 rebuild exon 92596 92654 . - . gene_id "RvY_12714"; transcript_id "RvY_12714.2"; Scaffold008 rebuild transcript 93506 96585 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; Pfam "[Ndc80_HEC] HEC/Ndc80p family"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold008 rebuild exon 93506 93711 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 93796 94066 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 94138 94569 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 94796 94901 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 95001 95095 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 95167 95308 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 95384 95589 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 95698 95997 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 96057 96290 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 96371 96479 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild exon 96578 96585 . + . gene_id "RvY_12715"; transcript_id "RvY_12715.1"; Scaffold008 rebuild transcript 97535 98309 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.1"; annotation "(1,3)hypothetical protein.(2)putative 33 kDa inner dynein arm light chain, axonemal"; Pfam "[Ax_dynein_light] Axonemal dynein light chain"; similar_genes "(1)IDLC_STRPU(e-value:7.4e-20;bit-score:95.0)(2)IDLC_STRPU(e-value:2.0e-28;bit-score:123.0)"; Scaffold008 rebuild exon 97535 97580 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.1"; Scaffold008 rebuild exon 97681 97859 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.1"; Scaffold008 rebuild exon 97945 98109 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.1"; Scaffold008 rebuild exon 98172 98309 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.1"; Scaffold008 rebuild transcript 97387 98118 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.2"; annotation "(1,3)hypothetical protein.(2)putative 33 kDa inner dynein arm light chain, axonemal"; Pfam "[Ax_dynein_light] Axonemal dynein light chain"; similar_genes "(1)IDLC_STRPU(e-value:7.4e-20;bit-score:95.0)(2)IDLC_STRPU(e-value:2.0e-28;bit-score:123.0)"; Scaffold008 rebuild exon 97387 97407 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.2"; Scaffold008 rebuild exon 97493 97580 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.2"; Scaffold008 rebuild exon 97681 97859 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.2"; Scaffold008 rebuild exon 97945 98118 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.2"; Scaffold008 rebuild transcript 96895 97684 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.3"; annotation "(1,3)hypothetical protein.(2)putative 33 kDa inner dynein arm light chain, axonemal"; Pfam "[Ax_dynein_light] Axonemal dynein light chain"; similar_genes "(1)IDLC_STRPU(e-value:7.4e-20;bit-score:95.0)(2)IDLC_STRPU(e-value:2.0e-28;bit-score:123.0)"; Scaffold008 rebuild exon 96895 96945 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.3"; Scaffold008 rebuild exon 97021 97172 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.3"; Scaffold008 rebuild exon 97326 97411 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.3"; Scaffold008 rebuild exon 97493 97580 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.3"; Scaffold008 rebuild exon 97681 97684 . + . gene_id "RvY_12716"; transcript_id "RvY_12716.3"; Scaffold008 rebuild transcript 98849 99514 . - . gene_id "RvY_12717"; transcript_id "RvY_12717.1"; gene_name "UMP_CMP_kin_fam"; annotation "hypothetical protein."; Pfam "[ADK] Adenylate kinase|[AAA_18] AAA domain|[AAA_17] AAA domain|[AAA_33] AAA domain"; CDD "UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic."; EC "EC2.7.4.-"; KO "K13800"; similar_genes "UMPK_SCHPO(e-value:7.9e-11;bit-score:65.0)"; Scaffold008 rebuild exon 98849 99514 . - . gene_id "RvY_12717"; transcript_id "RvY_12717.1"; Scaffold008 rebuild transcript 101107 104606 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; gene_name "ELP2"; annotation "elongator complex protein 2"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11374"; similar_genes "ELP2_DANRE(e-value:2.8e-15;bit-score:80.0)"; Scaffold008 rebuild exon 101107 101229 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 101344 101449 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 101579 101679 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 101740 102265 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 102329 102531 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 102593 102715 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 102782 102937 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 103024 103206 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 103277 103424 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 103489 103628 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 103814 104140 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 104201 104319 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild exon 104381 104606 . + . gene_id "RvY_12719"; transcript_id "RvY_12719.1"; Scaffold008 rebuild transcript 104795 106331 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; gene_name "INTS12"; annotation "integrator complex subunit 12"; Pfam "[PHD] PHD-finger"; KO "K13149"; Scaffold008 rebuild exon 104795 104887 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; Scaffold008 rebuild exon 105070 105210 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; Scaffold008 rebuild exon 105278 105482 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; Scaffold008 rebuild exon 105581 105918 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; Scaffold008 rebuild exon 105978 106081 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; Scaffold008 rebuild exon 106163 106331 . - . gene_id "RvY_12720"; transcript_id "RvY_12720.1"; Scaffold008 rebuild transcript 106578 106862 . - . gene_id "RvY_12721"; transcript_id "RvY_12721.1"; annotation "hypothetical protein."; Pfam "[CHCH]"; similar_genes "COX19_BOVIN(e-value:1.1e-24;bit-score:111.0)"; Scaffold008 rebuild exon 106578 106862 . - . gene_id "RvY_12721"; transcript_id "RvY_12721.1"; Scaffold008 rebuild transcript 107442 109373 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; annotation "hypothetical protein."; Pfam "[MobB] Molybdopterin guanine dinucleotide synthesis protein B|[Clp1] Pre-mRNA cleavage complex II protein Clp1"; KO "K14399"; similar_genes "CLP1_DROMO(e-value:2.3e-08;bit-score:57.0)"; Scaffold008 rebuild exon 107442 107547 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 107634 107727 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 107803 107883 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 107949 108215 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 108288 108545 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 108621 109017 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 109098 109187 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild exon 109299 109373 . - . gene_id "RvY_12722"; transcript_id "RvY_12722.1"; Scaffold008 rebuild transcript 110378 111902 . + . gene_id "RvY_12723"; transcript_id "RvY_12723.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[CSTF2_hinge] Hinge domain of cleavage stimulation factor subunit 2|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[CSTF_C] Transcription termination and cleavage factor C-terminal|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; KO "K14407"; Scaffold008 rebuild exon 110378 110414 . + . gene_id "RvY_12723"; transcript_id "RvY_12723.1"; Scaffold008 rebuild exon 110562 110833 . + . gene_id "RvY_12723"; transcript_id "RvY_12723.1"; Scaffold008 rebuild exon 110924 111151 . + . gene_id "RvY_12723"; transcript_id "RvY_12723.1"; Scaffold008 rebuild exon 111223 111618 . + . gene_id "RvY_12723"; transcript_id "RvY_12723.1"; Scaffold008 rebuild exon 111717 111902 . + . gene_id "RvY_12723"; transcript_id "RvY_12723.1"; Scaffold008 rebuild transcript 112805 113686 . + . gene_id "RvY_12724"; transcript_id "RvY_12724.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 112805 112853 . + . gene_id "RvY_12724"; transcript_id "RvY_12724.1"; Scaffold008 rebuild exon 112964 113152 . + . gene_id "RvY_12724"; transcript_id "RvY_12724.1"; Scaffold008 rebuild exon 113265 113686 . + . gene_id "RvY_12724"; transcript_id "RvY_12724.1"; Scaffold008 rebuild transcript 113744 114094 . - . gene_id "RvY_12725"; transcript_id "RvY_12725.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 113744 114094 . - . gene_id "RvY_12725"; transcript_id "RvY_12725.1"; Scaffold008 rebuild transcript 114176 116896 . - . gene_id "RvY_12726"; transcript_id "RvY_12726.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 114176 114582 . - . gene_id "RvY_12726"; transcript_id "RvY_12726.1"; Scaffold008 rebuild exon 114821 115577 . - . gene_id "RvY_12726"; transcript_id "RvY_12726.1"; Scaffold008 rebuild exon 115652 116253 . - . gene_id "RvY_12726"; transcript_id "RvY_12726.1"; Scaffold008 rebuild exon 116341 116896 . - . gene_id "RvY_12726"; transcript_id "RvY_12726.1"; Scaffold008 rebuild transcript 117571 119178 . + . gene_id "RvY_12727"; transcript_id "RvY_12727.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 117571 117846 . + . gene_id "RvY_12727"; transcript_id "RvY_12727.1"; Scaffold008 rebuild exon 117928 118197 . + . gene_id "RvY_12727"; transcript_id "RvY_12727.1"; Scaffold008 rebuild exon 118279 118403 . + . gene_id "RvY_12727"; transcript_id "RvY_12727.1"; Scaffold008 rebuild exon 119109 119178 . + . gene_id "RvY_12727"; transcript_id "RvY_12727.1"; Scaffold008 rebuild transcript 121771 126342 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; gene_name "ADRA2C"; annotation "putative Alpha-2C adrenergic receptor"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; KO "K04140"; similar_genes "ADA2C_CAVPO(e-value:1.1e-35;bit-score:148.0)"; Scaffold008 rebuild exon 121771 122158 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; Scaffold008 rebuild exon 122221 122257 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; Scaffold008 rebuild exon 123893 124207 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; Scaffold008 rebuild exon 124681 124909 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; Scaffold008 rebuild exon 125151 125891 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; Scaffold008 rebuild exon 126121 126342 . + . gene_id "RvY_12728"; transcript_id "RvY_12728.1"; Scaffold008 rebuild transcript 126623 135827 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; gene_name "PLCB"; annotation "1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-4"; Pfam "[efhand_like] Phosphoinositide-specific phospholipase C, efhand-like|[PI-PLC-Y] Phosphatidylinositol-specific phospholipase C, Y domain|[PI-PLC-X] Phosphatidylinositol-specific phospholipase C, X domain|[DUF1154]|[C2]"; EC "EC3.1.4.11"; KO "K05858"; similar_genes "PLCB4_BOVIN(e-value:1.4e-137;bit-score:486.0)"; Scaffold008 rebuild exon 126623 126691 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 126899 127145 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 127204 127434 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 127491 127556 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 127631 127766 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 128028 128255 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 128325 128529 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 128608 128772 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 129289 129391 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 129474 129650 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 129720 129804 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 129867 129915 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 129974 130327 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 130466 130833 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 130915 131005 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 131070 131154 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 131225 131395 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 131475 131685 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 131759 131867 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 131957 132011 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 132240 132340 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 132420 132555 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 132623 132840 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 132907 132966 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 133333 133413 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild exon 135738 135827 . - . gene_id "RvY_12729"; transcript_id "RvY_12729.1"; Scaffold008 rebuild transcript 138546 138920 . + . gene_id "RvY_12730"; transcript_id "RvY_12730.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 138546 138920 . + . gene_id "RvY_12730"; transcript_id "RvY_12730.1"; Scaffold008 rebuild transcript 138570 138659 . - . gene_id "RvY_12731"; transcript_id "RvY_12731.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 138570 138659 . - . gene_id "RvY_12731"; transcript_id "RvY_12731.1"; Scaffold008 rebuild transcript 139644 141700 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; gene_name "PIP4K"; annotation "putative Phosphatidylinositol-5-phosphate 4-kinase type-2 alpha"; Pfam "[PIP5K] Phosphatidylinositol-4-phosphate 5-Kinase"; CDD "Phosphatidylinositol phosphate kinases."; EC "EC2.7.1.149"; KO "K00920"; similar_genes "PI42A_MOUSE(e-value:1.3e-38;bit-score:157.0)"; Scaffold008 rebuild exon 139644 139757 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 139848 139945 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 140027 140123 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 140210 140305 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 140370 140426 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 140537 140683 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 140869 141021 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 141112 141358 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 141451 141515 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild exon 141581 141700 . + . gene_id "RvY_12732"; transcript_id "RvY_12732.1"; Scaffold008 rebuild transcript 142313 143121 . - . gene_id "RvY_12733"; transcript_id "RvY_12733.1"; annotation "hypothetical protein."; Pfam "[zf-CDGSH] Iron-binding zinc finger CDGSH type"; Scaffold008 rebuild exon 142313 142492 . - . gene_id "RvY_12733"; transcript_id "RvY_12733.1"; Scaffold008 rebuild exon 142671 142851 . - . gene_id "RvY_12733"; transcript_id "RvY_12733.1"; Scaffold008 rebuild exon 142926 142963 . - . gene_id "RvY_12733"; transcript_id "RvY_12733.1"; Scaffold008 rebuild exon 143038 143121 . - . gene_id "RvY_12733"; transcript_id "RvY_12733.1"; Scaffold008 rebuild transcript 144396 149705 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; annotation "putative Coiled-coil domain-containing protein 132"; Pfam "[DUF2450] Protein of unknown function N-terminal domain (DUF2450)|[DUF2451] Protein of unknown function C-terminus (DUF2451)"; similar_genes "CC132_CHICK(e-value:8.0e-30;bit-score:128.0)"; Scaffold008 rebuild exon 144396 144437 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 144568 144777 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 144861 144932 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 145052 145176 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 145240 145618 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 145749 146031 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 146114 146759 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 147002 147484 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 147559 147748 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 147811 148031 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild exon 149495 149705 . + . gene_id "RvY_12734"; transcript_id "RvY_12734.1"; Scaffold008 rebuild transcript 148054 149319 . - . gene_id "RvY_12735"; transcript_id "RvY_12735.1"; gene_name "PP2Ac"; annotation "hypothetical protein."; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, including PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "PPZ2_YEAST(e-value:2.0e-11;bit-score:67.0)"; Scaffold008 rebuild exon 148054 148251 . - . gene_id "RvY_12735"; transcript_id "RvY_12735.1"; Scaffold008 rebuild exon 148315 149319 . - . gene_id "RvY_12735"; transcript_id "RvY_12735.1"; Scaffold008 rebuild transcript 150122 150502 . - . gene_id "RvY_12736"; transcript_id "RvY_12736.1"; annotation "hypothetical protein."; Pfam "[Tom22] Mitochondrial import receptor subunit Tom22"; Scaffold008 rebuild exon 150122 150502 . - . gene_id "RvY_12736"; transcript_id "RvY_12736.1"; Scaffold008 rebuild transcript 151045 156584 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; gene_name "RPA2"; annotation "DNA-directed RNA polymerase I subunit RPA2"; Pfam "[RNA_pol_Rpb2_1] RNA polymerase beta subunit|[RNA_pol_Rpa2_4] RNA polymerase I, Rpa2 specific domain|[RNA_pol_Rpb2_2] RNA polymerase Rpb2, domain 2|[RNA_pol_Rpb2_5] RNA polymerase Rpb2, domain 5|[RNA_pol_Rpb2_7] RNA polymerase Rpb2, domain 7|[RNA_pol_Rpb2_3] RNA polymerase Rpb2, domain 3|[RNA_pol_Rpb2_6] RNA polymerase Rpb2, domain 6"; CDD "DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]"; EC "EC2.7.7.6"; KO "K03002"; similar_genes "RPA2_DROME(e-value:3.8e-91;bit-score:332.0)"; Scaffold008 rebuild exon 151045 151149 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 151282 151359 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 151462 151590 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 151673 151792 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 151879 151944 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 152009 152083 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 152147 152245 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 152333 152505 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 152610 152810 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 152876 152993 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 153176 153705 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 154038 154473 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 154548 154724 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 154830 155053 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 155134 155275 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 155575 156150 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild exon 156372 156584 . + . gene_id "RvY_12737"; transcript_id "RvY_12737.1"; Scaffold008 rebuild transcript 157016 167285 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; gene_name "RYRN"; annotation "putative Ryanodine receptor 44F"; Pfam "[RYDR_ITPR] RIH domain|[Ins145_P3_rec] Inositol 1,4,5-trisphosphate/ryanodine receptor|[MIR]|[RyR]|[SPRY]"; KO "K05327"; similar_genes "RY44_DROME(e-value:6.7e-42;bit-score:168.0)"; Scaffold008 rebuild exon 157016 157081 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 157146 157271 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 157965 158063 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 158132 158203 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 158267 158455 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 158536 158807 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 159108 160134 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 160200 160572 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 160821 161436 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 161564 161875 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 161942 162141 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 162210 162301 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 162364 162665 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 162736 162957 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 163031 163471 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 163770 164346 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 164436 164777 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 164837 165069 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 165152 165273 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 165349 165586 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 165654 165721 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 165793 165877 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 165945 166060 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 166144 166298 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 166374 166472 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 166558 166696 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 166830 166865 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild exon 167008 167285 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.1"; Scaffold008 rebuild transcript 157016 167285 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; gene_name "RYRN"; annotation "putative Ryanodine receptor 44F"; Pfam "[RYDR_ITPR] RIH domain|[Ins145_P3_rec] Inositol 1,4,5-trisphosphate/ryanodine receptor|[MIR]|[RyR]|[SPRY]"; KO "K05327"; similar_genes "RY44_DROME(e-value:6.7e-42;bit-score:168.0)"; Scaffold008 rebuild exon 157016 157081 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 157146 157271 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 157965 158063 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 158132 158203 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 158267 158455 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 158536 158807 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 159108 160134 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 160200 160572 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 160821 161436 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 161564 161875 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 161942 162141 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 162210 162301 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 162364 162665 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 162736 162957 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 163031 163471 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 163848 164346 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 164436 164777 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 164837 165069 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 165152 165273 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 165349 165586 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 165654 165721 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 165793 165877 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 165945 166060 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 166144 166298 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 166374 166472 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 166558 166696 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 166830 166865 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild exon 167008 167285 . + . gene_id "RvY_12738"; transcript_id "RvY_12738.2"; Scaffold008 rebuild transcript 167452 170012 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 167452 167560 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild exon 167696 167960 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild exon 168177 168287 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild exon 168366 168653 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild exon 168899 169042 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild exon 169120 169433 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild exon 169504 170012 . - . gene_id "RvY_12739"; transcript_id "RvY_12739.1"; Scaffold008 rebuild transcript 170788 182186 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; gene_name "RYRN"; annotation "Ryanodine receptor 44F"; Pfam "[RYDR_ITPR] RIH domain|[RR_TM4-6] Ryanodine Receptor TM 4-6|[RyR]|[Ion_trans] Ion transport protein|[RIH_assoc] RyR and IP3R Homology associated"; KO "K05327"; similar_genes "RY44_DROME(e-value:2.2e-74;bit-score:276.0)"; Scaffold008 rebuild exon 170788 170937 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 171010 171139 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 171216 171842 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 171901 172073 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 172154 172374 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 172445 172535 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 172607 172673 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 172803 173073 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 173318 174101 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 174173 174710 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 174778 175144 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 175270 175672 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 175855 176421 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 176485 176923 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 177064 177411 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 177479 178218 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 178298 178995 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 179309 179784 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 180082 180491 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 180554 180684 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 180783 181017 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 181082 181366 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 181439 181595 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 181681 181846 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 181906 181962 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 182026 182051 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild exon 182116 182186 . + . gene_id "RvY_12740"; transcript_id "RvY_12740.1"; Scaffold008 rebuild transcript 182402 184679 . - . gene_id "RvY_12741"; transcript_id "RvY_12741.1"; gene_name "DUF2043"; annotation "hypothetical protein."; Pfam "[DUF2043] Uncharacterized conserved protein (DUF2043)"; CDD "Uncharacterized conserved protein (DUF2043). This is a 100 residue conserved region of a family of proteins found from fungi to humans. This region contains three conserved Cysteines and a motif of {CP}{y/l}{HG}."; similar_genes "K1530_MOUSE(e-value:2.4e-16;bit-score:83.0)"; Scaffold008 rebuild exon 182402 182733 . - . gene_id "RvY_12741"; transcript_id "RvY_12741.1"; Scaffold008 rebuild exon 182940 183345 . - . gene_id "RvY_12741"; transcript_id "RvY_12741.1"; Scaffold008 rebuild exon 183411 183887 . - . gene_id "RvY_12741"; transcript_id "RvY_12741.1"; Scaffold008 rebuild exon 184023 184679 . - . gene_id "RvY_12741"; transcript_id "RvY_12741.1"; Scaffold008 rebuild transcript 186181 187353 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; gene_name "tdcF"; annotation "TdcF protein"; Pfam "[Ribonuc_L-PSP] Endoribonuclease L-PSP"; CDD "endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease Scaffold008 rebuild exon 186181 186280 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild exon 186382 186514 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild exon 186601 186684 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild exon 186765 186795 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild exon 186913 187017 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild exon 187146 187169 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild exon 187252 187353 . + . gene_id "RvY_12742"; transcript_id "RvY_12742.1"; Scaffold008 rebuild transcript 187546 188259 . - . gene_id "RvY_12743"; transcript_id "RvY_12743.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 187546 188028 . - . gene_id "RvY_12743"; transcript_id "RvY_12743.1"; Scaffold008 rebuild exon 188179 188259 . - . gene_id "RvY_12743"; transcript_id "RvY_12743.1"; Scaffold008 rebuild transcript 189229 192461 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; gene_name "LSm14_N"; annotation "hypothetical protein."; Pfam "[LSM14] Scd6-like Sm domain"; CDD "LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles."; Scaffold008 rebuild exon 189229 189403 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 189473 189610 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 189742 189931 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 190013 190382 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 190441 190648 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 190735 190892 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 191099 191828 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild exon 192409 192461 . + . gene_id "RvY_12744"; transcript_id "RvY_12744.1"; Scaffold008 rebuild transcript 192834 194684 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; annotation "hypothetical protein."; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; Scaffold008 rebuild exon 192834 193006 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 193073 193109 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 193172 193315 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 193392 193442 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 193510 193632 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 193735 193869 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 194150 194312 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild exon 194386 194684 . - . gene_id "RvY_12745"; transcript_id "RvY_12745.1"; Scaffold008 rebuild transcript 195418 196190 . + . gene_id "RvY_12746"; transcript_id "RvY_12746.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 195418 195498 . + . gene_id "RvY_12746"; transcript_id "RvY_12746.1"; Scaffold008 rebuild exon 195563 195709 . + . gene_id "RvY_12746"; transcript_id "RvY_12746.1"; Scaffold008 rebuild exon 195783 195908 . + . gene_id "RvY_12746"; transcript_id "RvY_12746.1"; Scaffold008 rebuild exon 195977 196048 . + . gene_id "RvY_12746"; transcript_id "RvY_12746.1"; Scaffold008 rebuild exon 196122 196190 . + . gene_id "RvY_12746"; transcript_id "RvY_12746.1"; Scaffold008 rebuild transcript 196789 198040 . + . gene_id "RvY_12747"; transcript_id "RvY_12747.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; similar_genes "CRVP2_ENHPO(e-value:1.3e-08;bit-score:58.0)"; Scaffold008 rebuild exon 196789 197224 . + . gene_id "RvY_12747"; transcript_id "RvY_12747.1"; Scaffold008 rebuild exon 197283 197431 . + . gene_id "RvY_12747"; transcript_id "RvY_12747.1"; Scaffold008 rebuild exon 197526 197629 . + . gene_id "RvY_12747"; transcript_id "RvY_12747.1"; Scaffold008 rebuild exon 197718 197809 . + . gene_id "RvY_12747"; transcript_id "RvY_12747.1"; Scaffold008 rebuild exon 197892 198040 . + . gene_id "RvY_12747"; transcript_id "RvY_12747.1"; Scaffold008 rebuild transcript 198477 199847 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; Scaffold008 rebuild exon 198477 198537 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 198631 198704 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 198831 198963 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 199064 199200 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 199274 199302 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 199359 199430 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 199504 199604 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild exon 199693 199847 . + . gene_id "RvY_12748"; transcript_id "RvY_12748.1"; Scaffold008 rebuild transcript 200233 201425 . + . gene_id "RvY_12749"; transcript_id "RvY_12749.1"; gene_name "SCP_CRISP"; annotation "hypothetical protein."; Pfam "[CAP] Cysteine-rich secretory protein family|[Crisp]"; CDD "SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding."; Scaffold008 rebuild exon 200233 200728 . + . gene_id "RvY_12749"; transcript_id "RvY_12749.1"; Scaffold008 rebuild exon 200792 200962 . + . gene_id "RvY_12749"; transcript_id "RvY_12749.1"; Scaffold008 rebuild exon 201021 201197 . + . gene_id "RvY_12749"; transcript_id "RvY_12749.1"; Scaffold008 rebuild exon 201265 201425 . + . gene_id "RvY_12749"; transcript_id "RvY_12749.1"; Scaffold008 rebuild transcript 201696 203221 . - . gene_id "RvY_12750"; transcript_id "RvY_12750.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 201696 202156 . - . gene_id "RvY_12750"; transcript_id "RvY_12750.1"; Scaffold008 rebuild exon 202244 202540 . - . gene_id "RvY_12750"; transcript_id "RvY_12750.1"; Scaffold008 rebuild exon 202669 202770 . - . gene_id "RvY_12750"; transcript_id "RvY_12750.1"; Scaffold008 rebuild exon 202861 203007 . - . gene_id "RvY_12750"; transcript_id "RvY_12750.1"; Scaffold008 rebuild exon 203113 203221 . - . gene_id "RvY_12750"; transcript_id "RvY_12750.1"; Scaffold008 rebuild transcript 203605 205127 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.1"; gene_name "mraW"; annotation "(1)S-adenosyl-methyltransferase [EC:2.1.1.-](2)hypothetical protein."; Pfam "[Methyltransf_5] MraW methylase family"; CDD "S-adenosyl-methyltransferase MraW; Provisional"; EC "(1)EC2.1.1.-"; KO "(1)K03438"; similar_genes "(1)MRAW_RHOP2(e-value:1.2e-09;bit-score:61.0)"; Scaffold008 rebuild exon 203605 204475 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.1"; Scaffold008 rebuild exon 204538 204847 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.1"; Scaffold008 rebuild exon 204920 205127 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.1"; Scaffold008 rebuild transcript 203605 205127 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.2"; gene_name "mraW"; annotation "(1)S-adenosyl-methyltransferase [EC:2.1.1.-](2)hypothetical protein."; Pfam "[Methyltransf_5] MraW methylase family"; CDD "S-adenosyl-methyltransferase MraW; Provisional"; EC "(1)EC2.1.1.-"; KO "(1)K03438"; similar_genes "(1)MRAW_RHOP2(e-value:1.2e-09;bit-score:61.0)"; Scaffold008 rebuild exon 203605 204475 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.2"; Scaffold008 rebuild exon 204538 204620 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.2"; Scaffold008 rebuild exon 204684 204847 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.2"; Scaffold008 rebuild exon 204920 205127 . + . gene_id "RvY_12751"; transcript_id "RvY_12751.2"; Scaffold008 rebuild transcript 207007 209785 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; annotation "hypothetical protein."; similar_genes "PXDC2_XENLA(e-value:1.9e-22;bit-score:104.0)"; Scaffold008 rebuild exon 207007 207072 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 207163 207293 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 207432 207869 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 207986 208081 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 208155 208245 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 208368 208432 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 208513 208639 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 208711 208760 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 208895 208964 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 209078 209212 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 209403 209614 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild exon 209704 209785 . - . gene_id "RvY_12752"; transcript_id "RvY_12752.1"; Scaffold008 rebuild transcript 212942 216353 . + . gene_id "RvY_12753"; transcript_id "RvY_12753.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 212942 213422 . + . gene_id "RvY_12753"; transcript_id "RvY_12753.1"; Scaffold008 rebuild exon 213532 216353 . + . gene_id "RvY_12753"; transcript_id "RvY_12753.1"; Scaffold008 rebuild transcript 216819 220031 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; gene_name "LTA4H"; annotation "Leukotriene A-4 hydrolase"; Pfam "[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1|[Leuk-A4-hydro_C] Leukotriene A4 hydrolase, C-terminal"; CDD "leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same Scaffold008 rebuild exon 216819 216942 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 217009 217113 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 217220 217302 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 217375 217519 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 217580 217760 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 217827 217971 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 218067 218178 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 218244 218338 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 218415 218555 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 218647 218772 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 218874 219044 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 219138 219249 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 219349 219494 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 219591 219946 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild exon 220013 220031 . - . gene_id "RvY_12754"; transcript_id "RvY_12754.1"; Scaffold008 rebuild transcript 220616 222941 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; gene_name "CYP2J"; annotation "cytochrome P450, family 2, subfamily J [EC:1.14.14.1]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07418"; Scaffold008 rebuild exon 220616 221021 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 221099 221215 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 221281 221607 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 222023 222061 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 222128 222388 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 222455 222601 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 222666 222800 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild exon 222889 222941 . + . gene_id "RvY_12755"; transcript_id "RvY_12755.1"; Scaffold008 rebuild transcript 223153 225385 . + . gene_id "RvY_12756"; transcript_id "RvY_12756.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "ATG18_LODEL(e-value:1.1e-14;bit-score:78.0)"; Scaffold008 rebuild exon 223153 223524 . + . gene_id "RvY_12756"; transcript_id "RvY_12756.1"; Scaffold008 rebuild exon 224528 225385 . + . gene_id "RvY_12756"; transcript_id "RvY_12756.1"; Scaffold008 rebuild transcript 223996 225385 . + . gene_id "RvY_12756"; transcript_id "RvY_12756.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "ATG18_LODEL(e-value:1.1e-14;bit-score:78.0)"; Scaffold008 rebuild exon 223996 224115 . + . gene_id "RvY_12756"; transcript_id "RvY_12756.2"; Scaffold008 rebuild exon 224528 225385 . + . gene_id "RvY_12756"; transcript_id "RvY_12756.2"; Scaffold008 rebuild transcript 225433 227585 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; gene_name "CYP51"; annotation "Lanosterol 14-alpha demethylase"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.13.70"; KO "K05917"; similar_genes "CP51A_HUMAN(e-value:3.5e-117;bit-score:418.0)"; Scaffold008 rebuild exon 225433 225670 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 225748 225857 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 225941 226102 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 226214 226343 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 226424 226629 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 226712 226927 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 226992 227168 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 227279 227377 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild exon 227445 227585 . - . gene_id "RvY_12757"; transcript_id "RvY_12757.1"; Scaffold008 rebuild transcript 228102 231059 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; gene_name "LSS"; annotation "putative Lanosterol synthase"; Pfam "[Prenyltrans_2] Prenyltransferase-like|[Prenyltrans] Prenyltransferase and squalene oxidase repeat|[Prenyltrans_1] Prenyltransferase-like"; CDD "Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain."; EC "EC5.4.99.7"; KO "K01852"; similar_genes "ERG7_HUMAN(e-value:1.1e-48;bit-score:191.0)"; Scaffold008 rebuild exon 228102 228305 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 228359 228606 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 228683 228958 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 229032 229222 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 229289 229407 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 229487 229669 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 229730 230008 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 230076 230278 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 230363 230512 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 230595 230765 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild exon 230846 231059 . + . gene_id "RvY_12758"; transcript_id "RvY_12758.1"; Scaffold008 rebuild transcript 231627 231935 . - . gene_id "RvY_12759"; transcript_id "RvY_12759.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 231627 231935 . - . gene_id "RvY_12759"; transcript_id "RvY_12759.1"; Scaffold008 rebuild transcript 231675 231980 . + . gene_id "RvY_12760"; transcript_id "RvY_12760.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 231675 231980 . + . gene_id "RvY_12760"; transcript_id "RvY_12760.1"; Scaffold008 rebuild transcript 232728 233288 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.1"; annotation "hypothetical protein."; similar_genes "(1)GRP2_NICSY(e-value:2.8e-15;bit-score:80.0)"; Scaffold008 rebuild exon 232728 233288 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.1"; Scaffold008 rebuild transcript 232088 232783 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.2"; annotation "hypothetical protein."; similar_genes "(1)GRP2_NICSY(e-value:2.8e-15;bit-score:80.0)"; Scaffold008 rebuild exon 232088 232311 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.2"; Scaffold008 rebuild exon 232438 232689 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.2"; Scaffold008 rebuild exon 232765 232783 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.2"; Scaffold008 rebuild transcript 232798 233127 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.3"; annotation "hypothetical protein."; similar_genes "(1)GRP2_NICSY(e-value:2.8e-15;bit-score:80.0)"; Scaffold008 rebuild exon 232798 233127 . + . gene_id "RvY_12761"; transcript_id "RvY_12761.3"; Scaffold008 rebuild transcript 233888 234755 . + . gene_id "RvY_12762"; transcript_id "RvY_12762.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 233888 233938 . + . gene_id "RvY_12762"; transcript_id "RvY_12762.1"; Scaffold008 rebuild exon 233999 234138 . + . gene_id "RvY_12762"; transcript_id "RvY_12762.1"; Scaffold008 rebuild exon 234212 234341 . + . gene_id "RvY_12762"; transcript_id "RvY_12762.1"; Scaffold008 rebuild exon 234416 234591 . + . gene_id "RvY_12762"; transcript_id "RvY_12762.1"; Scaffold008 rebuild exon 234671 234755 . + . gene_id "RvY_12762"; transcript_id "RvY_12762.1"; Scaffold008 rebuild transcript 233978 234268 . - . gene_id "RvY_12763"; transcript_id "RvY_12763.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 233978 234268 . - . gene_id "RvY_12763"; transcript_id "RvY_12763.1"; Scaffold008 rebuild transcript 235313 236305 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 235313 235351 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; Scaffold008 rebuild exon 235427 235563 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; Scaffold008 rebuild exon 235642 235843 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; Scaffold008 rebuild exon 235910 236010 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; Scaffold008 rebuild exon 236118 236176 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; Scaffold008 rebuild exon 236259 236305 . + . gene_id "RvY_12764"; transcript_id "RvY_12764.1"; Scaffold008 rebuild transcript 236785 237828 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 236785 236826 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; Scaffold008 rebuild exon 236906 237058 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; Scaffold008 rebuild exon 237126 237239 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; Scaffold008 rebuild exon 237327 237388 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; Scaffold008 rebuild exon 237526 237636 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; Scaffold008 rebuild exon 237726 237828 . + . gene_id "RvY_12765"; transcript_id "RvY_12765.1"; Scaffold008 rebuild transcript 238298 239193 . + . gene_id "RvY_12766"; transcript_id "RvY_12766.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 238298 238441 . + . gene_id "RvY_12766"; transcript_id "RvY_12766.1"; Scaffold008 rebuild exon 238525 238577 . + . gene_id "RvY_12766"; transcript_id "RvY_12766.1"; Scaffold008 rebuild exon 238649 238787 . + . gene_id "RvY_12766"; transcript_id "RvY_12766.1"; Scaffold008 rebuild exon 238888 239051 . + . gene_id "RvY_12766"; transcript_id "RvY_12766.1"; Scaffold008 rebuild exon 239136 239193 . + . gene_id "RvY_12766"; transcript_id "RvY_12766.1"; Scaffold008 rebuild transcript 239681 240536 . + . gene_id "RvY_12767"; transcript_id "RvY_12767.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 239681 239731 . + . gene_id "RvY_12767"; transcript_id "RvY_12767.1"; Scaffold008 rebuild exon 239817 239944 . + . gene_id "RvY_12767"; transcript_id "RvY_12767.1"; Scaffold008 rebuild exon 240003 240082 . + . gene_id "RvY_12767"; transcript_id "RvY_12767.1"; Scaffold008 rebuild exon 240151 240203 . + . gene_id "RvY_12767"; transcript_id "RvY_12767.1"; Scaffold008 rebuild exon 240279 240536 . + . gene_id "RvY_12767"; transcript_id "RvY_12767.1"; Scaffold008 rebuild transcript 241277 241871 . - . gene_id "RvY_12768"; transcript_id "RvY_12768.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 241277 241300 . - . gene_id "RvY_12768"; transcript_id "RvY_12768.1"; Scaffold008 rebuild exon 241437 241482 . - . gene_id "RvY_12768"; transcript_id "RvY_12768.1"; Scaffold008 rebuild exon 241553 241727 . - . gene_id "RvY_12768"; transcript_id "RvY_12768.1"; Scaffold008 rebuild exon 241817 241871 . - . gene_id "RvY_12768"; transcript_id "RvY_12768.1"; Scaffold008 rebuild transcript 242311 242547 . - . gene_id "RvY_12769"; transcript_id "RvY_12769.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 242311 242547 . - . gene_id "RvY_12769"; transcript_id "RvY_12769.1"; Scaffold008 rebuild transcript 243326 244446 . - . gene_id "RvY_12770"; transcript_id "RvY_12770.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 243326 243488 . - . gene_id "RvY_12770"; transcript_id "RvY_12770.1"; Scaffold008 rebuild exon 243576 243744 . - . gene_id "RvY_12770"; transcript_id "RvY_12770.1"; Scaffold008 rebuild exon 244016 244119 . - . gene_id "RvY_12770"; transcript_id "RvY_12770.1"; Scaffold008 rebuild exon 244192 244291 . - . gene_id "RvY_12770"; transcript_id "RvY_12770.1"; Scaffold008 rebuild exon 244368 244446 . - . gene_id "RvY_12770"; transcript_id "RvY_12770.1"; Scaffold008 rebuild transcript 244959 246692 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; annotation "hypothetical protein."; Pfam "[OSTMP1] Osteopetrosis-associated transmembrane protein 1 precursor"; Scaffold008 rebuild exon 244959 245062 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild exon 245245 245410 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild exon 245483 245575 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild exon 245640 245693 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild exon 245766 245890 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild exon 245947 246064 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild exon 246231 246692 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.1"; Scaffold008 rebuild transcript 245222 246692 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; annotation "hypothetical protein."; Pfam "[OSTMP1] Osteopetrosis-associated transmembrane protein 1 precursor"; Scaffold008 rebuild exon 245222 245410 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; Scaffold008 rebuild exon 245483 245575 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; Scaffold008 rebuild exon 245640 245693 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; Scaffold008 rebuild exon 245766 245890 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; Scaffold008 rebuild exon 245947 246064 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; Scaffold008 rebuild exon 246231 246692 . - . gene_id "RvY_12771"; transcript_id "RvY_12771.2"; Scaffold008 rebuild transcript 249517 251219 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; product "CAHS11"; annotation "CAHS11 | hypothetical protein."; Scaffold008 rebuild exon 249517 249806 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; Scaffold008 rebuild exon 249921 250047 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; Scaffold008 rebuild exon 250131 250298 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; Scaffold008 rebuild exon 250430 250500 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; Scaffold008 rebuild exon 250586 251018 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; Scaffold008 rebuild exon 251097 251219 . - . gene_id "RvY_12773"; transcript_id "RvY_12773.1"; Scaffold008 rebuild transcript 252185 252725 . - . gene_id "RvY_12774"; transcript_id "RvY_12774.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 252185 252387 . - . gene_id "RvY_12774"; transcript_id "RvY_12774.1"; Scaffold008 rebuild exon 252457 252597 . - . gene_id "RvY_12774"; transcript_id "RvY_12774.1"; Scaffold008 rebuild exon 252665 252725 . - . gene_id "RvY_12774"; transcript_id "RvY_12774.1"; Scaffold008 rebuild transcript 253750 255358 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; annotation "hypothetical protein."; Pfam "[XendoU] Endoribonuclease XendoU"; KO "K14648"; Scaffold008 rebuild exon 253750 253828 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 253916 254003 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 254106 254192 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 254266 254465 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 254532 254583 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 254670 254711 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 254798 254936 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 254995 255054 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 255119 255212 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild exon 255276 255358 . + . gene_id "RvY_12775"; transcript_id "RvY_12775.1"; Scaffold008 rebuild transcript 258174 260596 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; annotation "hypothetical protein."; Pfam "[LMBR1] LMBR1-like membrane protein"; KO "K14617"; similar_genes "LMBD1_DANRE(e-value:1.6e-13;bit-score:74.0)"; Scaffold008 rebuild exon 258174 258367 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 258431 258650 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 258718 258855 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 258922 258994 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 259058 259263 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 259323 259513 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 259606 259694 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 259780 259847 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 259931 260025 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 260106 260169 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 260288 260464 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild exon 260537 260596 . - . gene_id "RvY_12776"; transcript_id "RvY_12776.1"; Scaffold008 rebuild transcript 260950 261321 . + . gene_id "RvY_12777"; transcript_id "RvY_12777.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 260950 261321 . + . gene_id "RvY_12777"; transcript_id "RvY_12777.1"; Scaffold008 rebuild transcript 261370 268999 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; gene_name "DICER1"; annotation "putative Endoribonuclease Dcr-1"; Pfam "[dsRNA_bind] Double stranded RNA binding domain|[Helicase_C] Helicase conserved C-terminal domain|[Ribonuclease_3] Ribonuclease III domain|[PAZ]|[dsrm] Double-stranded RNA binding motif"; CDD "PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes."; EC "EC3.1.26.-"; KO "K11592"; similar_genes "DCR1_DROME(e-value:4.5e-43;bit-score:172.0)"; Scaffold008 rebuild exon 261370 261435 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 261547 261601 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 261681 261797 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 261853 262008 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 262146 262450 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 262519 263071 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 263275 263590 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 263661 263808 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 263896 264192 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 264254 264478 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 264778 265171 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 265400 265848 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 265990 266737 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 266804 267237 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 267298 267878 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 267942 268088 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 268178 268373 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 268436 268619 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 268704 268779 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild exon 268840 268999 . + . gene_id "RvY_12778"; transcript_id "RvY_12778.1"; Scaffold008 rebuild transcript 269201 269371 . + . gene_id "RvY_12779"; transcript_id "RvY_12779.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 269201 269371 . + . gene_id "RvY_12779"; transcript_id "RvY_12779.1"; Scaffold008 rebuild transcript 269665 272185 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; gene_name "UBCc"; annotation "putative Ubiquitin-conjugating enzyme E2 Z"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; CDD "Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the Scaffold008 rebuild exon 269665 269890 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 270040 270297 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 270405 270485 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 270651 270970 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 271031 271138 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 271226 271260 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 271467 271842 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild exon 272042 272185 . + . gene_id "RvY_12780"; transcript_id "RvY_12780.1"; Scaffold008 rebuild transcript 273223 275240 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; gene_name "(1)FBXW9"; annotation "(1)F-box and WD-40 domain protein 9(2)hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "(1)K10265"; Scaffold008 rebuild exon 273223 273526 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 273590 273757 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 273952 274085 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 274196 274241 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 274327 274393 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 274463 274709 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 274796 275060 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild exon 275164 275240 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.1"; Scaffold008 rebuild transcript 274546 275508 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.2"; gene_name "(1)FBXW9"; annotation "(1)F-box and WD-40 domain protein 9(2)hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "(1)K10265"; Scaffold008 rebuild exon 274546 274709 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.2"; Scaffold008 rebuild exon 274796 275060 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.2"; Scaffold008 rebuild exon 275164 275508 . + . gene_id "RvY_12781"; transcript_id "RvY_12781.2"; Scaffold008 rebuild transcript 276229 277200 . - . gene_id "RvY_12782"; transcript_id "RvY_12782.1"; gene_name "GH16_laminarinase"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_16] Glycosyl hydrolases family 16|[SKN1] Beta-glucan synthesis-associated protein (SKN1)"; CDD "Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans."; Scaffold008 rebuild exon 276229 276653 . - . gene_id "RvY_12782"; transcript_id "RvY_12782.1"; Scaffold008 rebuild exon 276873 277200 . - . gene_id "RvY_12782"; transcript_id "RvY_12782.1"; Scaffold008 rebuild transcript 278335 285057 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; gene_name "NPC1"; annotation "Niemann-Pick C1 protein"; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation"; CDD "Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis."; KO "K12385"; similar_genes "NPC1_HUMAN(e-value:9.3e-67;bit-score:251.0)"; Scaffold008 rebuild exon 278335 278465 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 278636 278798 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 278865 278978 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 279050 279476 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 279599 280044 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 280493 280717 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 280824 280951 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 281263 281689 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 282010 282365 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 282435 282597 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 282659 283038 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 283358 283531 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 283609 283779 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 283995 284222 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 284292 284486 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 284596 284860 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild exon 284983 285057 . - . gene_id "RvY_12783"; transcript_id "RvY_12783.1"; Scaffold008 rebuild transcript 286174 290824 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; gene_name "UBE1L2"; annotation "ubiquitin-activating enzyme E1-like protein 2 [EC:6.3.2.19]"; Pfam "[UBA_e1_C] Ubiquitin-activating enzyme e1 C-terminal domain|[ThiF] ThiF family|[UBA_e1_thiolCys] Ubiquitin-activating enzyme Scaffold008 rebuild exon 286174 286550 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 286769 287223 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 287546 287847 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 287918 288049 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 288130 288273 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 288352 288670 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 288909 289201 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 289290 289456 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 289527 289890 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 290091 290516 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild exon 290585 290824 . - . gene_id "RvY_12784"; transcript_id "RvY_12784.1"; Scaffold008 rebuild transcript 291471 293790 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; annotation "hypothetical protein."; Pfam "[zf-C3Hc3H] Potential DNA-binding domain"; Scaffold008 rebuild exon 291471 291665 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; Scaffold008 rebuild exon 291743 291940 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; Scaffold008 rebuild exon 292001 292221 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; Scaffold008 rebuild exon 292316 292479 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; Scaffold008 rebuild exon 292557 292898 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; Scaffold008 rebuild exon 292967 293790 . - . gene_id "RvY_12785"; transcript_id "RvY_12785.1"; Scaffold008 rebuild transcript 294052 294387 . - . gene_id "RvY_12786"; transcript_id "RvY_12786.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 294052 294387 . - . gene_id "RvY_12786"; transcript_id "RvY_12786.1"; Scaffold008 rebuild transcript 294410 295797 . + . gene_id "RvY_12787"; transcript_id "RvY_12787.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 294410 294559 . + . gene_id "RvY_12787"; transcript_id "RvY_12787.1"; Scaffold008 rebuild exon 294658 294928 . + . gene_id "RvY_12787"; transcript_id "RvY_12787.1"; Scaffold008 rebuild exon 294990 295643 . + . gene_id "RvY_12787"; transcript_id "RvY_12787.1"; Scaffold008 rebuild exon 295736 295797 . + . gene_id "RvY_12787"; transcript_id "RvY_12787.1"; Scaffold008 rebuild transcript 296696 304110 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; gene_name "COG5307"; annotation "Brefeldin A-inhibited guanine nucleotide-exchange protein 2"; Pfam "[DUF1981]|[Sec7_N] Guanine nucleotide exchange factor in Golgi transport N-terminal|[Sec7]"; CDD "SEC7 domain proteins [General function prediction only]"; similar_genes "BIG2_HUMAN(e-value:5.8e-77;bit-score:285.0)"; Scaffold008 rebuild exon 296696 296825 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 296907 296937 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 297029 297179 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 297276 297422 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 297495 297867 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 297934 298183 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 298246 298580 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 298683 298783 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 298861 299008 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 299079 299397 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 299461 299631 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 299704 300025 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 300179 300547 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 300614 300758 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 300854 300988 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 301080 301246 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 301312 301636 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 301705 301999 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 302172 302437 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 302502 302689 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 302780 302885 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 303122 303457 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 303526 303673 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 303744 303861 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild exon 303967 304110 . + . gene_id "RvY_12788"; transcript_id "RvY_12788.1"; Scaffold008 rebuild transcript 305017 306298 . - . gene_id "RvY_12789"; transcript_id "RvY_12789.1"; gene_name "SC4MOL"; annotation "C-4 methylsterol oxidase"; Pfam "[FA_hydroxylase] Fatty acid hydroxylase superfamily"; CDD "Sterol desaturase [Lipid metabolism]"; EC "EC1.14.13.72"; KO "K07750"; similar_genes "ERG25_DANRE(e-value:2.7e-100;bit-score:362.0)"; Scaffold008 rebuild exon 305017 305201 . - . gene_id "RvY_12789"; transcript_id "RvY_12789.1"; Scaffold008 rebuild exon 305332 305539 . - . gene_id "RvY_12789"; transcript_id "RvY_12789.1"; Scaffold008 rebuild exon 305625 305828 . - . gene_id "RvY_12789"; transcript_id "RvY_12789.1"; Scaffold008 rebuild exon 305892 306041 . - . gene_id "RvY_12789"; transcript_id "RvY_12789.1"; Scaffold008 rebuild exon 306122 306298 . - . gene_id "RvY_12789"; transcript_id "RvY_12789.1"; Scaffold008 rebuild transcript 306956 309041 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; gene_name "miaA"; annotation "putative tRNA dimethylallyltransferase, mitochondrial"; Pfam "[AAA_17] AAA domain|[IPPT] IPP transferase"; CDD "tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed"; EC "EC2.5.1.75"; KO "K00791"; similar_genes "MOD5_MOUSE(e-value:5.9e-26;bit-score:115.0)"; Scaffold008 rebuild exon 306956 307108 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 307256 307393 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 307486 307590 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 307661 307854 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 307930 308072 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 308143 308242 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 308342 308538 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 308603 308824 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild exon 308923 309041 . + . gene_id "RvY_12790"; transcript_id "RvY_12790.1"; Scaffold008 rebuild transcript 309523 310473 . - . gene_id "RvY_12791"; transcript_id "RvY_12791.1"; gene_name "HSPBP1"; annotation "hsp70-interacting protein"; Pfam "[HEAT_2] HEAT repeats|[Fes1] Nucleotide exchange factor Fes1"; KO "K09562"; Scaffold008 rebuild exon 309523 310473 . - . gene_id "RvY_12791"; transcript_id "RvY_12791.1"; Scaffold008 rebuild transcript 311359 313916 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; annotation "hypothetical protein."; Pfam "[7tm_7] 7tm Chemosensory receptor"; Scaffold008 rebuild exon 311359 311583 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; Scaffold008 rebuild exon 311757 311867 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; Scaffold008 rebuild exon 311942 312016 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; Scaffold008 rebuild exon 312230 312689 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; Scaffold008 rebuild exon 312749 313098 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; Scaffold008 rebuild exon 313911 313916 . - . gene_id "RvY_12792"; transcript_id "RvY_12792.1"; Scaffold008 rebuild transcript 314594 315390 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 314594 314656 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.1"; Scaffold008 rebuild exon 314736 314792 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.1"; Scaffold008 rebuild exon 314865 314918 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.1"; Scaffold008 rebuild exon 315001 315087 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.1"; Scaffold008 rebuild exon 315166 315390 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.1"; Scaffold008 rebuild transcript 315088 315390 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 315088 315390 . - . gene_id "RvY_12793"; transcript_id "RvY_12793.2"; Scaffold008 rebuild transcript 315373 316382 . + . gene_id "RvY_12794"; transcript_id "RvY_12794.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 315373 315623 . + . gene_id "RvY_12794"; transcript_id "RvY_12794.1"; Scaffold008 rebuild exon 316226 316382 . + . gene_id "RvY_12794"; transcript_id "RvY_12794.1"; Scaffold008 rebuild transcript 317359 318266 . - . gene_id "RvY_12795"; transcript_id "RvY_12795.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 317359 318113 . - . gene_id "RvY_12795"; transcript_id "RvY_12795.1"; Scaffold008 rebuild exon 318197 318266 . - . gene_id "RvY_12795"; transcript_id "RvY_12795.1"; Scaffold008 rebuild transcript 319005 319804 . + . gene_id "RvY_12796"; transcript_id "RvY_12796.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 319005 319559 . + . gene_id "RvY_12796"; transcript_id "RvY_12796.1"; Scaffold008 rebuild exon 319700 319804 . + . gene_id "RvY_12796"; transcript_id "RvY_12796.1"; Scaffold008 rebuild transcript 319927 320292 . - . gene_id "RvY_12797"; transcript_id "RvY_12797.1"; annotation "hypothetical protein."; Pfam "[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; Scaffold008 rebuild exon 319927 320292 . - . gene_id "RvY_12797"; transcript_id "RvY_12797.1"; Scaffold008 rebuild transcript 321258 322479 . + . gene_id "RvY_12798"; transcript_id "RvY_12798.1"; annotation "hypothetical protein."; Pfam "[DUF1279]"; Scaffold008 rebuild exon 321258 321391 . + . gene_id "RvY_12798"; transcript_id "RvY_12798.1"; Scaffold008 rebuild exon 321500 321811 . + . gene_id "RvY_12798"; transcript_id "RvY_12798.1"; Scaffold008 rebuild exon 322272 322479 . + . gene_id "RvY_12798"; transcript_id "RvY_12798.1"; Scaffold008 rebuild transcript 321262 321468 . - . gene_id "RvY_12799"; transcript_id "RvY_12799.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 321262 321468 . - . gene_id "RvY_12799"; transcript_id "RvY_12799.1"; Scaffold008 rebuild transcript 323542 326594 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; gene_name "GABAtrns_euk"; annotation "putative 4-aminobutyrate aminotransferase, mitochondrial"; Pfam "[Aminotran_3] Aminotransferase class-III"; CDD "4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase."; EC "EC2.6.1.19"; KO "K13524"; similar_genes "GABT_MOUSE(e-value:2.3e-42;bit-score:170.0)"; Scaffold008 rebuild exon 323542 323599 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 323722 323879 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 324381 324498 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 324706 324755 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 324871 324951 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 325022 325056 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 325138 325195 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 325274 325400 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 325472 325758 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 325972 326139 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild exon 326214 326594 . + . gene_id "RvY_12800"; transcript_id "RvY_12800.1"; Scaffold008 rebuild transcript 329249 330107 . - . gene_id "RvY_12801"; transcript_id "RvY_12801.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 329249 329770 . - . gene_id "RvY_12801"; transcript_id "RvY_12801.1"; Scaffold008 rebuild exon 330000 330107 . - . gene_id "RvY_12801"; transcript_id "RvY_12801.1"; Scaffold008 rebuild transcript 329593 330612 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.1"; gene_name "(1)RNF11"; annotation "(1)E3 ubiquitin-protein ligase RNF11(2)hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "(1)RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; KO "(1)K11980"; similar_genes "(1)RNF11_BOVIN(e-value:1.3e-21;bit-score:101.0)"; Scaffold008 rebuild exon 329593 329772 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.1"; Scaffold008 rebuild exon 330002 330141 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.1"; Scaffold008 rebuild exon 330230 330305 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.1"; Scaffold008 rebuild exon 330490 330612 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.1"; Scaffold008 rebuild transcript 329316 329681 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.2"; gene_name "(1)RNF11"; annotation "(1)E3 ubiquitin-protein ligase RNF11(2)hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "(1)RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]"; KO "(1)K11980"; similar_genes "(1)RNF11_BOVIN(e-value:1.3e-21;bit-score:101.0)"; Scaffold008 rebuild exon 329316 329681 . + . gene_id "RvY_12802"; transcript_id "RvY_12802.2"; Scaffold008 rebuild transcript 331810 332876 . - . gene_id "RvY_12803"; transcript_id "RvY_12803.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold008 rebuild exon 331810 331829 . - . gene_id "RvY_12803"; transcript_id "RvY_12803.1"; Scaffold008 rebuild exon 332110 332368 . - . gene_id "RvY_12803"; transcript_id "RvY_12803.1"; Scaffold008 rebuild exon 332604 332755 . - . gene_id "RvY_12803"; transcript_id "RvY_12803.1"; Scaffold008 rebuild exon 332768 332876 . - . gene_id "RvY_12803"; transcript_id "RvY_12803.1"; Scaffold008 rebuild transcript 332910 333095 . - . gene_id "RvY_12804"; transcript_id "RvY_12804.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 332910 333095 . - . gene_id "RvY_12804"; transcript_id "RvY_12804.1"; Scaffold008 rebuild transcript 337901 343951 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; gene_name "NR0A1S"; annotation "putative Knirps-related protein"; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers. The first DNA-binding domain (DBD) of the 2DBD nuclear receptors(NRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. Theses proteins contain two DBDs in tandem, probably resulted from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown."; KO "K08706"; similar_genes "KNRL_DROME(e-value:2.7e-45;bit-score:180.0)"; Scaffold008 rebuild exon 337901 337915 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; Scaffold008 rebuild exon 338000 338077 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; Scaffold008 rebuild exon 341905 341982 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; Scaffold008 rebuild exon 342402 342463 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; Scaffold008 rebuild exon 342543 342625 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; Scaffold008 rebuild exon 343212 343951 . + . gene_id "RvY_12805"; transcript_id "RvY_12805.1"; Scaffold008 rebuild transcript 344524 346207 . - . gene_id "RvY_12806"; transcript_id "RvY_12806.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold008 rebuild exon 344524 344905 . - . gene_id "RvY_12806"; transcript_id "RvY_12806.1"; Scaffold008 rebuild exon 345070 345266 . - . gene_id "RvY_12806"; transcript_id "RvY_12806.1"; Scaffold008 rebuild exon 345329 345670 . - . gene_id "RvY_12806"; transcript_id "RvY_12806.1"; Scaffold008 rebuild exon 345737 345874 . - . gene_id "RvY_12806"; transcript_id "RvY_12806.1"; Scaffold008 rebuild exon 345965 346207 . - . gene_id "RvY_12806"; transcript_id "RvY_12806.1"; Scaffold008 rebuild transcript 346711 347829 . - . gene_id "RvY_12807"; transcript_id "RvY_12807.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 346711 347829 . - . gene_id "RvY_12807"; transcript_id "RvY_12807.1"; Scaffold008 rebuild transcript 348536 353435 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[TUDOR] Tudor domain|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; Scaffold008 rebuild exon 348536 348738 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 348989 349156 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 349261 349371 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 349587 349994 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 350357 350624 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 350683 351088 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 351368 351577 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 351696 351894 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 352117 352251 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 352339 352517 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 352589 352660 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 352760 352830 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 352970 353084 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 353200 353288 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild exon 353370 353435 . - . gene_id "RvY_12808"; transcript_id "RvY_12808.1"; Scaffold008 rebuild transcript 355153 357038 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; gene_name "FMN2"; annotation "formin 2"; Pfam "[FH2] Formin Homology 2 Domain"; KO "K02184"; similar_genes "CAPU_DROME(e-value:4.1e-14;bit-score:76.0)"; Scaffold008 rebuild exon 355153 355260 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 355375 355456 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 355533 355682 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 355764 355917 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 356012 356129 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 356234 356367 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 356441 356643 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 356723 356802 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild exon 356922 357038 . - . gene_id "RvY_12809"; transcript_id "RvY_12809.1"; Scaffold008 rebuild transcript 357113 358826 . - . gene_id "RvY_12810"; transcript_id "RvY_12810.1"; gene_name "PRK12323"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Provisional"; similar_genes "LECT_SOLTU(e-value:2.3e-08;bit-score:57.0)"; Scaffold008 rebuild exon 357113 357338 . - . gene_id "RvY_12810"; transcript_id "RvY_12810.1"; Scaffold008 rebuild exon 357440 357587 . - . gene_id "RvY_12810"; transcript_id "RvY_12810.1"; Scaffold008 rebuild exon 357660 358050 . - . gene_id "RvY_12810"; transcript_id "RvY_12810.1"; Scaffold008 rebuild exon 358143 358238 . - . gene_id "RvY_12810"; transcript_id "RvY_12810.1"; Scaffold008 rebuild exon 358329 358826 . - . gene_id "RvY_12810"; transcript_id "RvY_12810.1"; Scaffold008 rebuild transcript 359536 361215 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; annotation "hypothetical protein."; Pfam "[BRO1] BRO1-like domain"; similar_genes "PDC6I_XENLA(e-value:5.3e-12;bit-score:69.0)"; Scaffold008 rebuild exon 359536 359588 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 359649 359874 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 359964 360080 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 360146 360255 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 360333 360614 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 360673 360791 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 360891 360990 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild exon 361080 361215 . - . gene_id "RvY_12811"; transcript_id "RvY_12811.1"; Scaffold008 rebuild transcript 362345 364372 . + . gene_id "RvY_12812"; transcript_id "RvY_12812.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 362345 362549 . + . gene_id "RvY_12812"; transcript_id "RvY_12812.1"; Scaffold008 rebuild exon 362622 364372 . + . gene_id "RvY_12812"; transcript_id "RvY_12812.1"; Scaffold008 rebuild transcript 364831 365434 . - . gene_id "RvY_12813"; transcript_id "RvY_12813.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 364831 364921 . - . gene_id "RvY_12813"; transcript_id "RvY_12813.1"; Scaffold008 rebuild exon 365313 365434 . - . gene_id "RvY_12813"; transcript_id "RvY_12813.1"; Scaffold008 rebuild transcript 365439 365621 . + . gene_id "RvY_12814"; transcript_id "RvY_12814.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 365439 365621 . + . gene_id "RvY_12814"; transcript_id "RvY_12814.1"; Scaffold008 rebuild transcript 365861 366061 . - . gene_id "RvY_12815"; transcript_id "RvY_12815.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 365861 366061 . - . gene_id "RvY_12815"; transcript_id "RvY_12815.1"; Scaffold008 rebuild transcript 366390 367513 . + . gene_id "RvY_12816"; transcript_id "RvY_12816.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 366390 366507 . + . gene_id "RvY_12816"; transcript_id "RvY_12816.1"; Scaffold008 rebuild exon 366936 367184 . + . gene_id "RvY_12816"; transcript_id "RvY_12816.1"; Scaffold008 rebuild exon 367290 367513 . + . gene_id "RvY_12816"; transcript_id "RvY_12816.1"; Scaffold008 rebuild transcript 366839 367225 . - . gene_id "RvY_12817"; transcript_id "RvY_12817.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 366839 367225 . - . gene_id "RvY_12817"; transcript_id "RvY_12817.1"; Scaffold008 rebuild transcript 367745 369912 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.1"; gene_name "(1)DNAI1"; annotation "(1)dynein intermediate chain 1, axonemal(2)hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)FOG: WD40 repeat [General function prediction only]"; KO "(1)K10409"; Scaffold008 rebuild exon 367745 368659 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.1"; Scaffold008 rebuild exon 368738 368827 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.1"; Scaffold008 rebuild exon 368897 369153 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.1"; Scaffold008 rebuild exon 369231 369813 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.1"; Scaffold008 rebuild exon 369898 369912 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.1"; Scaffold008 rebuild transcript 369777 371094 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.2"; gene_name "(1)DNAI1"; annotation "(1)dynein intermediate chain 1, axonemal(2)hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "(1)FOG: WD40 repeat [General function prediction only]"; KO "(1)K10409"; Scaffold008 rebuild exon 369777 369813 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.2"; Scaffold008 rebuild exon 369898 370118 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.2"; Scaffold008 rebuild exon 370210 370491 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.2"; Scaffold008 rebuild exon 370576 370941 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.2"; Scaffold008 rebuild exon 371068 371094 . - . gene_id "RvY_12818"; transcript_id "RvY_12818.2"; Scaffold008 rebuild transcript 371934 373977 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; similar_genes "MFS10_MOUSE(e-value:2.8e-19;bit-score:93.0)"; Scaffold008 rebuild exon 371934 371975 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 372071 372268 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 372349 372549 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 372622 372780 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 372861 373055 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 373123 373331 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 373415 373523 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild exon 373666 373977 . + . gene_id "RvY_12819"; transcript_id "RvY_12819.1"; Scaffold008 rebuild transcript 374162 374814 . - . gene_id "RvY_12820"; transcript_id "RvY_12820.1"; gene_name "RPB11"; annotation "putative DNA-directed RNA polymerase II subunit RPB11"; Pfam "[RNA_pol_L] RNA polymerase Rpb3/Rpb11 dimerisation domain|[RNA_pol_L_2] RNA polymerase Rpb3/Rpb11 dimerisation domain"; CDD "RPB11 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB11 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association."; KO "K03008"; similar_genes "RPB11_DROME(e-value:6.7e-42;bit-score:168.0)"; Scaffold008 rebuild exon 374162 374233 . - . gene_id "RvY_12820"; transcript_id "RvY_12820.1"; Scaffold008 rebuild exon 374306 374480 . - . gene_id "RvY_12820"; transcript_id "RvY_12820.1"; Scaffold008 rebuild exon 374573 374662 . - . gene_id "RvY_12820"; transcript_id "RvY_12820.1"; Scaffold008 rebuild exon 374762 374814 . - . gene_id "RvY_12820"; transcript_id "RvY_12820.1"; Scaffold008 rebuild transcript 374961 375460 . + . gene_id "RvY_12821"; transcript_id "RvY_12821.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 374961 375049 . + . gene_id "RvY_12821"; transcript_id "RvY_12821.1"; Scaffold008 rebuild exon 375307 375460 . + . gene_id "RvY_12821"; transcript_id "RvY_12821.1"; Scaffold008 rebuild transcript 375528 375701 . + . gene_id "RvY_12822"; transcript_id "RvY_12822.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 375528 375701 . + . gene_id "RvY_12822"; transcript_id "RvY_12822.1"; Scaffold008 rebuild transcript 376464 377478 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.1"; gene_name "(1)SCP1"; annotation "hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; CDD "(1)Calponin [Cytoskeleton]"; Scaffold008 rebuild exon 376464 376499 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.1"; Scaffold008 rebuild exon 376554 376678 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.1"; Scaffold008 rebuild exon 376753 376919 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.1"; Scaffold008 rebuild exon 377096 377296 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.1"; Scaffold008 rebuild exon 377417 377478 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.1"; Scaffold008 rebuild transcript 376324 376757 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.2"; gene_name "(1)SCP1"; annotation "hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain"; CDD "(1)Calponin [Cytoskeleton]"; Scaffold008 rebuild exon 376324 376499 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.2"; Scaffold008 rebuild exon 376554 376678 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.2"; Scaffold008 rebuild exon 376753 376757 . + . gene_id "RvY_12823"; transcript_id "RvY_12823.2"; Scaffold008 rebuild transcript 377870 388483 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin_2] Cadherin-like|[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold008 rebuild exon 377870 378411 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 378729 378837 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 379153 379257 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 383062 383363 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 383515 384261 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 384480 384691 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 384798 384892 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 385199 385542 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 387435 387771 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild exon 388112 388483 . - . gene_id "RvY_12824"; transcript_id "RvY_12824.1"; Scaffold008 rebuild transcript 388638 388976 . + . gene_id "RvY_12825"; transcript_id "RvY_12825.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 388638 388976 . + . gene_id "RvY_12825"; transcript_id "RvY_12825.1"; Scaffold008 rebuild transcript 397633 400506 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; gene_name "AOF2"; annotation "lysine-specific histone demethylase 1 [EC:1.-.-.-]"; Pfam "[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[DAO] FAD dependent oxidoreductase|[SWIRM]|[Amino_oxidase] Flavin containing amine oxidoreductase|[NAD_binding_8] NAD(P)-binding Rossmann-like domain"; EC "EC1.-.-.-"; KO "K11450"; similar_genes "LDL2_ORYSJ(e-value:1.0e-08;bit-score:58.0)"; Scaffold008 rebuild exon 397633 397994 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; Scaffold008 rebuild exon 398059 398487 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; Scaffold008 rebuild exon 398602 399451 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; Scaffold008 rebuild exon 399517 399887 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; Scaffold008 rebuild exon 399957 400385 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; Scaffold008 rebuild exon 400464 400506 . - . gene_id "RvY_12826"; transcript_id "RvY_12826.1"; Scaffold008 rebuild transcript 402000 402682 . + . gene_id "RvY_12827"; transcript_id "RvY_12827.1"; gene_name "ESSS"; annotation "hypothetical protein."; Pfam "[ESSS] ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)"; CDD "ESSS subunit of NADH:ubiquinone oxidoreductase (complex I). This subunit is part of the mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences."; KO "K11351"; Scaffold008 rebuild exon 402000 402215 . + . gene_id "RvY_12827"; transcript_id "RvY_12827.1"; Scaffold008 rebuild exon 402331 402464 . + . gene_id "RvY_12827"; transcript_id "RvY_12827.1"; Scaffold008 rebuild exon 402526 402682 . + . gene_id "RvY_12827"; transcript_id "RvY_12827.1"; Scaffold008 rebuild transcript 403608 403989 . - . gene_id "RvY_12828"; transcript_id "RvY_12828.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 403608 403875 . - . gene_id "RvY_12828"; transcript_id "RvY_12828.1"; Scaffold008 rebuild exon 403985 403989 . - . gene_id "RvY_12828"; transcript_id "RvY_12828.1"; Scaffold008 rebuild transcript 406925 409119 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.1"; annotation "hypothetical protein."; EC "(1)EC3.6.1.-"; similar_genes "(1)DBP2_USTMA(e-value:8.7e-06;bit-score:48.0)"; Scaffold008 rebuild exon 406925 407008 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.1"; Scaffold008 rebuild exon 407099 407420 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.1"; Scaffold008 rebuild exon 407544 408062 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.1"; Scaffold008 rebuild exon 408146 409119 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.1"; Scaffold008 rebuild transcript 407868 409099 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.2"; annotation "hypothetical protein."; EC "(1)EC3.6.1.-"; similar_genes "(1)DBP2_USTMA(e-value:8.7e-06;bit-score:48.0)"; Scaffold008 rebuild exon 407868 408062 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.2"; Scaffold008 rebuild exon 408146 409099 . + . gene_id "RvY_12829"; transcript_id "RvY_12829.2"; Scaffold008 rebuild transcript 409698 410190 . - . gene_id "RvY_12830"; transcript_id "RvY_12830.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 409698 410023 . - . gene_id "RvY_12830"; transcript_id "RvY_12830.1"; Scaffold008 rebuild exon 410112 410190 . - . gene_id "RvY_12830"; transcript_id "RvY_12830.1"; Scaffold008 rebuild transcript 411482 413319 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 411482 411813 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; Scaffold008 rebuild exon 411874 412062 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; Scaffold008 rebuild exon 412292 412376 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; Scaffold008 rebuild exon 412465 412577 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; Scaffold008 rebuild exon 412912 413012 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; Scaffold008 rebuild exon 413228 413319 . - . gene_id "RvY_12831"; transcript_id "RvY_12831.1"; Scaffold008 rebuild transcript 412480 413181 . + . gene_id "RvY_12832"; transcript_id "RvY_12832.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 412480 412520 . + . gene_id "RvY_12832"; transcript_id "RvY_12832.1"; Scaffold008 rebuild exon 412884 413181 . + . gene_id "RvY_12832"; transcript_id "RvY_12832.1"; Scaffold008 rebuild transcript 414250 414564 . - . gene_id "RvY_12833"; transcript_id "RvY_12833.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 414250 414564 . - . gene_id "RvY_12833"; transcript_id "RvY_12833.1"; Scaffold008 rebuild transcript 414278 414919 . + . gene_id "RvY_12834"; transcript_id "RvY_12834.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)"; Scaffold008 rebuild exon 414278 414919 . + . gene_id "RvY_12834"; transcript_id "RvY_12834.1"; Scaffold008 rebuild transcript 415330 426495 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; gene_name "PARD3"; annotation "partitioning defective protein 3"; Pfam "[PDZ_2] PDZ domain|[DUF3534]|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; KO "K04237"; similar_genes "PAR3L_HUMAN(e-value:3.8e-21;bit-score:99.0)"; Scaffold008 rebuild exon 415330 415480 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 415790 416032 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 416114 416296 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 416543 417175 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 417374 417462 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 417530 417922 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 418183 418597 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 418711 418777 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 418901 419310 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 419693 419833 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 419927 420111 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 420183 420358 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 420652 420898 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 421182 421286 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild exon 426376 426495 . - . gene_id "RvY_12835"; transcript_id "RvY_12835.1"; Scaffold008 rebuild transcript 427869 429962 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold008 rebuild exon 427869 428072 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild exon 428190 428465 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild exon 428547 428636 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild exon 428705 428811 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild exon 428874 428962 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild exon 429043 429351 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild exon 429634 429962 . + . gene_id "RvY_12836"; transcript_id "RvY_12836.1"; Scaffold008 rebuild transcript 430249 431047 . - . gene_id "RvY_12837"; transcript_id "RvY_12837.1"; annotation "hypothetical protein."; Pfam "[Cmc1] Cytochrome c oxidase biogenesis protein Cmc1 like"; Scaffold008 rebuild exon 430249 430426 . - . gene_id "RvY_12837"; transcript_id "RvY_12837.1"; Scaffold008 rebuild exon 430564 430654 . - . gene_id "RvY_12837"; transcript_id "RvY_12837.1"; Scaffold008 rebuild exon 430756 430860 . - . gene_id "RvY_12837"; transcript_id "RvY_12837.1"; Scaffold008 rebuild exon 430954 431047 . - . gene_id "RvY_12837"; transcript_id "RvY_12837.1"; Scaffold008 rebuild transcript 431412 433039 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; gene_name "PSMD14"; annotation "26S proteasome non-ATPase regulatory subunit 14"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease|[MitMem_reg] Maintenance of mitochondrial structure and function|[Prok-JAB] Prokaryotic homologs of the JAB domain"; CDD "JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function."; EC "EC3.1.2.15"; KO "K03030"; similar_genes "PSDE_HUMAN(e-value:1.1e-141;bit-score:500.0)"; Scaffold008 rebuild exon 431412 431519 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 431582 431659 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 431761 431880 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 431954 432024 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 432082 432140 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 432232 432431 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 432514 432588 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 432678 432803 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild exon 432878 433039 . + . gene_id "RvY_12838"; transcript_id "RvY_12838.1"; Scaffold008 rebuild transcript 433635 434378 . + . gene_id "RvY_12839"; transcript_id "RvY_12839.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 433635 434378 . + . gene_id "RvY_12839"; transcript_id "RvY_12839.1"; Scaffold008 rebuild transcript 434797 435279 . + . gene_id "RvY_12840"; transcript_id "RvY_12840.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 434797 435279 . + . gene_id "RvY_12840"; transcript_id "RvY_12840.1"; Scaffold008 rebuild transcript 436114 438735 . - . gene_id "RvY_12841"; transcript_id "RvY_12841.1"; gene_name "MARS"; annotation "Methionyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)|[WHEP-TRS]"; CDD "methionyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.10"; KO "K01874"; similar_genes "SYMC_HUMAN(e-value:4.8e-87;bit-score:318.0)"; Scaffold008 rebuild exon 436114 436284 . - . gene_id "RvY_12841"; transcript_id "RvY_12841.1"; Scaffold008 rebuild exon 436454 437356 . - . gene_id "RvY_12841"; transcript_id "RvY_12841.1"; Scaffold008 rebuild exon 437536 438005 . - . gene_id "RvY_12841"; transcript_id "RvY_12841.1"; Scaffold008 rebuild exon 438198 438735 . - . gene_id "RvY_12841"; transcript_id "RvY_12841.1"; Scaffold008 rebuild transcript 439455 440316 . - . gene_id "RvY_12842"; transcript_id "RvY_12842.1"; gene_name "InfC"; annotation "hypothetical protein."; Pfam "[IF3_N] Translation initiation factor IF-3, N-terminal domain"; CDD "Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]"; Scaffold008 rebuild exon 439455 439616 . - . gene_id "RvY_12842"; transcript_id "RvY_12842.1"; Scaffold008 rebuild exon 439705 440316 . - . gene_id "RvY_12842"; transcript_id "RvY_12842.1"; Scaffold008 rebuild transcript 440890 442578 . + . gene_id "RvY_12843"; transcript_id "RvY_12843.1"; gene_name "PPN"; annotation "porcupine"; Pfam "[MBOAT] MBOAT, membrane-bound O-acyltransferase family"; EC "EC2.3.1.-"; KO "K00181"; similar_genes "PORCN_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold008 rebuild exon 440890 441169 . + . gene_id "RvY_12843"; transcript_id "RvY_12843.1"; Scaffold008 rebuild exon 441247 442091 . + . gene_id "RvY_12843"; transcript_id "RvY_12843.1"; Scaffold008 rebuild exon 442160 442411 . + . gene_id "RvY_12843"; transcript_id "RvY_12843.1"; Scaffold008 rebuild exon 442480 442578 . + . gene_id "RvY_12843"; transcript_id "RvY_12843.1"; Scaffold008 rebuild transcript 442772 446035 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold008 rebuild exon 442772 442889 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; Scaffold008 rebuild exon 442970 443240 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; Scaffold008 rebuild exon 443311 443600 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; Scaffold008 rebuild exon 443669 443748 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; Scaffold008 rebuild exon 444729 445387 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; Scaffold008 rebuild exon 445729 446035 . - . gene_id "RvY_12844"; transcript_id "RvY_12844.1"; Scaffold008 rebuild transcript 447078 448106 . - . gene_id "RvY_12845"; transcript_id "RvY_12845.1"; annotation "hypothetical protein."; Pfam "[CAF1] CAF1 family ribonuclease"; Scaffold008 rebuild exon 447078 448106 . - . gene_id "RvY_12845"; transcript_id "RvY_12845.1"; Scaffold008 rebuild transcript 448939 449976 . + . gene_id "RvY_12846"; transcript_id "RvY_12846.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 448939 449001 . + . gene_id "RvY_12846"; transcript_id "RvY_12846.1"; Scaffold008 rebuild exon 449083 449466 . + . gene_id "RvY_12846"; transcript_id "RvY_12846.1"; Scaffold008 rebuild exon 449565 449635 . + . gene_id "RvY_12846"; transcript_id "RvY_12846.1"; Scaffold008 rebuild exon 449724 449862 . + . gene_id "RvY_12846"; transcript_id "RvY_12846.1"; Scaffold008 rebuild exon 449950 449976 . + . gene_id "RvY_12846"; transcript_id "RvY_12846.1"; Scaffold008 rebuild transcript 450662 451585 . + . gene_id "RvY_12847"; transcript_id "RvY_12847.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; Scaffold008 rebuild exon 450662 450955 . + . gene_id "RvY_12847"; transcript_id "RvY_12847.1"; Scaffold008 rebuild exon 451068 451190 . + . gene_id "RvY_12847"; transcript_id "RvY_12847.1"; Scaffold008 rebuild exon 451295 451445 . + . gene_id "RvY_12847"; transcript_id "RvY_12847.1"; Scaffold008 rebuild exon 451527 451585 . + . gene_id "RvY_12847"; transcript_id "RvY_12847.1"; Scaffold008 rebuild transcript 452126 452909 . + . gene_id "RvY_12848"; transcript_id "RvY_12848.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; Scaffold008 rebuild exon 452126 452377 . + . gene_id "RvY_12848"; transcript_id "RvY_12848.1"; Scaffold008 rebuild exon 452447 452560 . + . gene_id "RvY_12848"; transcript_id "RvY_12848.1"; Scaffold008 rebuild exon 452635 452785 . + . gene_id "RvY_12848"; transcript_id "RvY_12848.1"; Scaffold008 rebuild exon 452851 452909 . + . gene_id "RvY_12848"; transcript_id "RvY_12848.1"; Scaffold008 rebuild transcript 453500 456192 . + . gene_id "RvY_12849"; transcript_id "RvY_12849.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 453500 453584 . + . gene_id "RvY_12849"; transcript_id "RvY_12849.1"; Scaffold008 rebuild exon 453691 455260 . + . gene_id "RvY_12849"; transcript_id "RvY_12849.1"; Scaffold008 rebuild exon 455657 455858 . + . gene_id "RvY_12849"; transcript_id "RvY_12849.1"; Scaffold008 rebuild exon 456076 456192 . + . gene_id "RvY_12849"; transcript_id "RvY_12849.1"; Scaffold008 rebuild transcript 456344 458798 . - . gene_id "RvY_12850"; transcript_id "RvY_12850.1"; gene_name "COG5329"; annotation "hypothetical protein."; Pfam "[Syja_N] SacI homology domain"; CDD "Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]"; EC "EC3.1.3.-"; similar_genes "SAC1A_DANRE(e-value:3.3e-20;bit-score:96.0)"; Scaffold008 rebuild exon 456344 456907 . - . gene_id "RvY_12850"; transcript_id "RvY_12850.1"; Scaffold008 rebuild exon 457163 457553 . - . gene_id "RvY_12850"; transcript_id "RvY_12850.1"; Scaffold008 rebuild exon 457766 458118 . - . gene_id "RvY_12850"; transcript_id "RvY_12850.1"; Scaffold008 rebuild exon 458193 458501 . - . gene_id "RvY_12850"; transcript_id "RvY_12850.1"; Scaffold008 rebuild exon 458556 458798 . - . gene_id "RvY_12850"; transcript_id "RvY_12850.1"; Scaffold008 rebuild transcript 460276 463561 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 460276 460372 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 460499 460909 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 461288 461665 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 461730 461773 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 461838 461876 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 461939 462016 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 462095 462232 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 462343 462573 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 462659 462791 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 462862 462952 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 463021 463141 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 463214 463378 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild exon 463454 463561 . + . gene_id "RvY_12851"; transcript_id "RvY_12851.1"; Scaffold008 rebuild transcript 464370 466106 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; gene_name "CYCc"; annotation "Atrial natriuretic peptide receptor 2"; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "ANPRB_ANGJA(e-value:1.1e-75;bit-score:280.0)"; Scaffold008 rebuild exon 464370 464375 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 464443 464661 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 464780 464862 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 464986 465060 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 465126 465160 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 465239 465348 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 465428 465590 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 465663 465696 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 465776 465825 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 465893 465987 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild exon 466059 466106 . + . gene_id "RvY_12852"; transcript_id "RvY_12852.1"; Scaffold008 rebuild transcript 474117 484350 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; gene_name "TFAP2A_B"; annotation "Transcription factor AP-2-alpha"; Pfam "[TF_AP-2] Transcription factor AP-2"; CDD "Transcription factor AP-2."; KO "K09176"; similar_genes "AP2A_BOVIN(e-value:4.9e-89;bit-score:325.0)"; Scaffold008 rebuild exon 474117 474593 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild exon 477174 477638 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild exon 480413 480485 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild exon 481311 481518 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild exon 482678 482796 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild exon 483713 483854 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild exon 484068 484350 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.1"; Scaffold008 rebuild transcript 468443 484350 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; gene_name "TFAP2A_B"; annotation "Transcription factor AP-2-alpha"; Pfam "[TF_AP-2] Transcription factor AP-2"; CDD "Transcription factor AP-2."; KO "K09176"; similar_genes "AP2A_BOVIN(e-value:4.9e-89;bit-score:325.0)"; Scaffold008 rebuild exon 468443 468565 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild exon 477174 477638 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild exon 480413 480485 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild exon 481311 481518 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild exon 482678 482796 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild exon 483713 483854 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild exon 484068 484350 . + . gene_id "RvY_12853"; transcript_id "RvY_12853.2"; Scaffold008 rebuild transcript 469174 469897 . - . gene_id "RvY_12854"; transcript_id "RvY_12854.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 469174 469343 . - . gene_id "RvY_12854"; transcript_id "RvY_12854.1"; Scaffold008 rebuild exon 469810 469897 . - . gene_id "RvY_12854"; transcript_id "RvY_12854.1"; Scaffold008 rebuild transcript 484936 491880 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; gene_name "DICER1"; annotation "putative Endoribonuclease Dcr-1"; Pfam "[dsRNA_bind] Double stranded RNA binding domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[Ribonuclease_3] Ribonuclease III domain|[PAZ]|[dsrm] Double-stranded RNA binding motif|[ResIII] Type III restriction enzyme, res subunit"; CDD "ERCC4-like helicases [DNA replication, recombination, and repair]"; EC "EC3.1.26.-"; KO "K11592"; similar_genes "DCR1_DROME(e-value:4.5e-26;bit-score:116.0)"; Scaffold008 rebuild exon 484936 485095 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 485175 485250 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 485320 485500 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 485569 485764 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 485849 485995 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 486150 486619 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 486798 487318 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 487523 487884 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 488171 488865 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 488927 489148 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 489232 489376 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 489445 489735 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 489813 489957 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 490040 490189 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 490257 490503 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 490571 490825 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 490914 491212 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 491288 491578 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 491647 491701 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild exon 491776 491880 . - . gene_id "RvY_12855"; transcript_id "RvY_12855.1"; Scaffold008 rebuild transcript 493275 493889 . + . gene_id "RvY_12856"; transcript_id "RvY_12856.1"; annotation "hypothetical protein."; Pfam "[Tmemb_170] Putative transmembrane protein 170"; Scaffold008 rebuild exon 493275 493434 . + . gene_id "RvY_12856"; transcript_id "RvY_12856.1"; Scaffold008 rebuild exon 493525 493695 . + . gene_id "RvY_12856"; transcript_id "RvY_12856.1"; Scaffold008 rebuild exon 493759 493889 . + . gene_id "RvY_12856"; transcript_id "RvY_12856.1"; Scaffold008 rebuild transcript 494464 495982 . + . gene_id "RvY_12857"; transcript_id "RvY_12857.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold008 rebuild exon 494464 494589 . + . gene_id "RvY_12857"; transcript_id "RvY_12857.1"; Scaffold008 rebuild exon 494683 494732 . + . gene_id "RvY_12857"; transcript_id "RvY_12857.1"; Scaffold008 rebuild exon 494870 495214 . + . gene_id "RvY_12857"; transcript_id "RvY_12857.1"; Scaffold008 rebuild exon 495381 495600 . + . gene_id "RvY_12857"; transcript_id "RvY_12857.1"; Scaffold008 rebuild exon 495680 495982 . + . gene_id "RvY_12857"; transcript_id "RvY_12857.1"; Scaffold008 rebuild transcript 496395 496850 . + . gene_id "RvY_12858"; transcript_id "RvY_12858.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 496395 496850 . + . gene_id "RvY_12858"; transcript_id "RvY_12858.1"; Scaffold008 rebuild transcript 498450 499361 . + . gene_id "RvY_12859"; transcript_id "RvY_12859.1"; annotation "hypothetical protein."; similar_genes "GRP1_PETHY(e-value:1.1e-14;bit-score:78.0)"; Scaffold008 rebuild exon 498450 498467 . + . gene_id "RvY_12859"; transcript_id "RvY_12859.1"; Scaffold008 rebuild exon 498566 498725 . + . gene_id "RvY_12859"; transcript_id "RvY_12859.1"; Scaffold008 rebuild exon 498839 498952 . + . gene_id "RvY_12859"; transcript_id "RvY_12859.1"; Scaffold008 rebuild exon 499111 499361 . + . gene_id "RvY_12859"; transcript_id "RvY_12859.1"; Scaffold008 rebuild transcript 499724 503692 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; gene_name "COG5329"; annotation "putative Phosphatidylinositide phosphatase SAC2"; Pfam "[hSac2] Inositol phosphatase|[Syja_N] SacI homology domain"; CDD "Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]"; EC "EC3.1.3.-"; similar_genes "SAC2_DANRE(e-value:5.3e-46;bit-score:182.0)"; Scaffold008 rebuild exon 499724 500490 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 500577 500805 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 500872 501169 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 501291 501389 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 501483 501800 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 501890 502082 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 502177 502288 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 502404 502877 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 502954 503115 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 503196 503332 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 503391 503471 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild exon 503596 503692 . - . gene_id "RvY_12860"; transcript_id "RvY_12860.1"; Scaffold008 rebuild transcript 505463 512402 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; gene_name "ROCK"; annotation "Rho-associated protein kinase 1"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_ROCK: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development."; EC "EC2.7.11.1"; KO "K04514"; similar_genes "ROCK1_RABIT(e-value:2.2e-110;bit-score:396.0)"; Scaffold008 rebuild exon 505463 505549 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 505786 505867 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 506201 506301 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 506375 506434 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 506571 506648 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 506730 506905 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 507080 507164 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 507280 507569 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 507855 508629 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 508978 509625 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 509701 509832 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 510082 510549 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 510744 511276 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 511522 511672 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 511764 511890 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 511953 512012 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 512077 512218 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild exon 512276 512402 . + . gene_id "RvY_12861"; transcript_id "RvY_12861.1"; Scaffold008 rebuild transcript 514143 514466 . - . gene_id "RvY_12862"; transcript_id "RvY_12862.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 514143 514466 . - . gene_id "RvY_12862"; transcript_id "RvY_12862.1"; Scaffold008 rebuild transcript 514540 515416 . + . gene_id "RvY_12863"; transcript_id "RvY_12863.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv"; Scaffold008 rebuild exon 514540 515181 . + . gene_id "RvY_12863"; transcript_id "RvY_12863.1"; Scaffold008 rebuild exon 515282 515416 . + . gene_id "RvY_12863"; transcript_id "RvY_12863.1"; Scaffold008 rebuild transcript 516110 531461 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; gene_name "LAMA3"; annotation "Laminin subunit alpha"; Pfam "[Laminin_I] Laminin Domain I|[Laminin_G_2] Laminin G domain|[Laminin_EGF] Laminin EGF-like (Domains III and V)|[Laminin_II] Laminin Domain II|[Laminin_B] Laminin B (Domain IV)|[Laminin_G_3] Concanavalin A-like lectin/glucanases superfamily|[Laminin_N] Laminin N-terminal (Domain VI)|[Laminin_G_1] Laminin G domain"; CDD "Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins."; KO "K06240"; similar_genes "LAMA_DROME(e-value:4.8e-68;bit-score:255.0)"; Scaffold008 rebuild exon 516110 516375 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 516450 516686 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 516757 517094 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 517156 517417 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 517482 517734 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 517938 518582 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 518743 519117 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 519185 519662 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 519749 519882 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 519965 520536 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 520766 521458 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 521626 521977 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 522130 522186 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 522271 522492 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 522576 522723 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 522787 523083 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 523371 523881 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 524025 524343 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 524420 524912 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 524996 525291 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 525529 526040 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 526154 526658 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 526952 527634 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 527700 528061 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 528129 528264 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 528326 528741 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 528808 528950 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 529019 529154 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 529246 529345 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 529433 529523 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 529616 529734 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 529839 529884 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 529967 530134 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 530348 530518 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 530587 530820 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 530982 531051 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild exon 531145 531461 . - . gene_id "RvY_12864"; transcript_id "RvY_12864.1"; Scaffold008 rebuild transcript 532130 534070 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; gene_name "galE"; annotation "UDP-glucose 4-epimerase"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[adh_short] short chain dehydrogenase|[RmlD_sub_bind] RmlD substrate binding domain|[NmrA] NmrA-like family|[KR]|[NAD_binding_10] NADH(P)-binding|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family|[Epimerase_Csub] UDP-glucose 4-epimerase C-term subunit"; CDD "UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]"; EC "EC5.1.3.2"; KO "K01784"; similar_genes "GALE_MOUSE(e-value:7.1e-67;bit-score:251.0)"; Scaffold008 rebuild exon 532130 532182 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 532310 532502 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 532585 532670 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 532734 532835 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 532894 532972 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 533036 533215 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 533293 533406 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 533746 533861 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild exon 533935 534070 . - . gene_id "RvY_12865"; transcript_id "RvY_12865.1"; Scaffold008 rebuild transcript 535262 537486 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold008 rebuild exon 535262 535418 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 535477 535580 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 535647 535724 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 535797 536820 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 536909 537012 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 537099 537136 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 537253 537360 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild exon 537432 537486 . - . gene_id "RvY_12866"; transcript_id "RvY_12866.1"; Scaffold008 rebuild transcript 537466 537735 . + . gene_id "RvY_12867"; transcript_id "RvY_12867.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 537466 537735 . + . gene_id "RvY_12867"; transcript_id "RvY_12867.1"; Scaffold008 rebuild transcript 537990 542514 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; gene_name "KAR"; annotation "beta-keto reductase [EC:1.1.1.-]"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.1.-|EC1.1.1.62"; KO "K10251"; similar_genes "DH12B_DANRE(e-value:1.6e-15;bit-score:81.0)"; Scaffold008 rebuild exon 537990 538112 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 538229 538378 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 538462 538644 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 538713 538822 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 539129 539242 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 542099 542174 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 542233 542279 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild exon 542346 542514 . - . gene_id "RvY_12868"; transcript_id "RvY_12868.1"; Scaffold008 rebuild transcript 543063 543509 . + . gene_id "RvY_12869"; transcript_id "RvY_12869.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 543063 543509 . + . gene_id "RvY_12869"; transcript_id "RvY_12869.1"; Scaffold008 rebuild transcript 543328 543753 . + . gene_id "RvY_12869"; transcript_id "RvY_12869.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 543328 543753 . + . gene_id "RvY_12869"; transcript_id "RvY_12869.2"; Scaffold008 rebuild transcript 543940 544866 . + . gene_id "RvY_12870"; transcript_id "RvY_12870.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_10] Glycosyltransferase family 10 (fucosyltransferase)"; EC "EC2.4.1.-"; KO "K14464"; similar_genes "FUCTC_DROME(e-value:2.3e-08;bit-score:57.0)"; Scaffold008 rebuild exon 543940 544232 . + . gene_id "RvY_12870"; transcript_id "RvY_12870.1"; Scaffold008 rebuild exon 544449 544866 . + . gene_id "RvY_12870"; transcript_id "RvY_12870.1"; Scaffold008 rebuild transcript 545135 546298 . - . gene_id "RvY_12871"; transcript_id "RvY_12871.1"; gene_name "SUA7"; annotation "hypothetical protein."; CDD "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]"; Scaffold008 rebuild exon 545135 545812 . - . gene_id "RvY_12871"; transcript_id "RvY_12871.1"; Scaffold008 rebuild exon 545876 546298 . - . gene_id "RvY_12871"; transcript_id "RvY_12871.1"; Scaffold008 rebuild transcript 548236 548481 . - . gene_id "RvY_12872"; transcript_id "RvY_12872.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 548236 548481 . - . gene_id "RvY_12872"; transcript_id "RvY_12872.1"; Scaffold008 rebuild transcript 549320 553840 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; annotation "hypothetical protein."; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[LBR_tudor] Lamin-B receptor of TUDOR domain|[DUF1325] SGF29 tudor-like domain|[53-BP1_Tudor] Tumour suppressor p53-binding protein-1 Tudor"; Scaffold008 rebuild exon 549320 549344 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 549404 549502 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 549573 549856 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 549921 550089 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 550155 550352 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 550437 550515 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 550590 550817 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 550878 551038 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 551268 551556 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 551647 551948 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 552023 552095 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 552218 552421 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 552514 552653 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 552732 552967 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 553030 553238 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 553316 553455 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild exon 553662 553840 . + . gene_id "RvY_12873"; transcript_id "RvY_12873.1"; Scaffold008 rebuild transcript 554632 555163 . - . gene_id "RvY_12874"; transcript_id "RvY_12874.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 554632 554885 . - . gene_id "RvY_12874"; transcript_id "RvY_12874.1"; Scaffold008 rebuild exon 554950 555163 . - . gene_id "RvY_12874"; transcript_id "RvY_12874.1"; Scaffold008 rebuild transcript 555950 556608 . - . gene_id "RvY_12875"; transcript_id "RvY_12875.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 555950 556162 . - . gene_id "RvY_12875"; transcript_id "RvY_12875.1"; Scaffold008 rebuild exon 556534 556608 . - . gene_id "RvY_12875"; transcript_id "RvY_12875.1"; Scaffold008 rebuild transcript 557157 558379 . - . gene_id "RvY_12876"; transcript_id "RvY_12876.1"; gene_name "CCL1"; annotation "hypothetical protein."; Pfam "[Cyclin_C] Cyclin, C-terminal domain|[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]"; similar_genes "CCNK_HUMAN(e-value:7.6e-24;bit-score:108.0)"; Scaffold008 rebuild exon 557157 557314 . - . gene_id "RvY_12876"; transcript_id "RvY_12876.1"; Scaffold008 rebuild exon 557402 557854 . - . gene_id "RvY_12876"; transcript_id "RvY_12876.1"; Scaffold008 rebuild exon 557911 558379 . - . gene_id "RvY_12876"; transcript_id "RvY_12876.1"; Scaffold008 rebuild transcript 559555 568288 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; product "EcRA1"; gene_name "NR_LBD_EcR"; annotation "EcRA1 | putative Ecdysone receptor"; Pfam "[Hormone_recep] Ligand-binding domain of nuclear hormone receptor|[zf-C4] Zinc finger, C4 type (two domains)"; CDD "The ligand binding domain (LBD) of the Ecdysone receptor, a member of the nuclear receptors super family. The ligand binding domain (LBD) of the ecdysone receptor: The ecdysone receptor (EcR) belongs to the superfamily of nuclear receptors (NRs) of ligand-dependent transcription factors. Ecdysone receptor is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. ECR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of ecdysone receptor are ecdysteroids#the endogenous steroidal hormones found in invertebrates. In addition, insecticide bisacylhydrazine used against pests has shown to act on EcR. EcR must be dimerised with a USP for high-affinity ligand binding to occur. The ligand binding triggers a conformational change in the C-terminal part of the EcR ligand-binding domain that leads to transcriptional activation of genes controlled by EcR. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ec dysone receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD)."; KO "K14034"; similar_genes "ECR_MANSE(e-value:3.9e-42;bit-score:169.0)"; Scaffold008 rebuild exon 559555 559802 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 559963 560182 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 560262 560423 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 560482 560819 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 561145 561285 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 561447 561632 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 567532 567743 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild exon 567963 568288 . - . gene_id "RvY_12877"; transcript_id "RvY_12877.1"; Scaffold008 rebuild transcript 562999 563502 . + . gene_id "RvY_12878"; transcript_id "RvY_12878.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 562999 563502 . + . gene_id "RvY_12878"; transcript_id "RvY_12878.1"; Scaffold008 rebuild transcript 570000 570488 . + . gene_id "RvY_12879"; transcript_id "RvY_12879.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 570000 570068 . + . gene_id "RvY_12879"; transcript_id "RvY_12879.1"; Scaffold008 rebuild exon 570312 570488 . + . gene_id "RvY_12879"; transcript_id "RvY_12879.1"; Scaffold008 rebuild transcript 574831 575187 . - . gene_id "RvY_12880"; transcript_id "RvY_12880.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 574831 575187 . - . gene_id "RvY_12880"; transcript_id "RvY_12880.1"; Scaffold008 rebuild transcript 579022 579785 . + . gene_id "RvY_12881"; transcript_id "RvY_12881.1"; annotation "hypothetical protein."; Pfam "[SAYSvFN] Uncharacterized conserved domain (SAYSvFN)"; Scaffold008 rebuild exon 579022 579285 . + . gene_id "RvY_12881"; transcript_id "RvY_12881.1"; Scaffold008 rebuild exon 579372 579785 . + . gene_id "RvY_12881"; transcript_id "RvY_12881.1"; Scaffold008 rebuild transcript 580000 581566 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; gene_name "eIF-33"; annotation "translation initiation factor eIF-3 subunit 3"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease"; CDD "JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function."; KO "K03247"; similar_genes "EIF3H_NEMVE(e-value:3.7e-19;bit-score:93.0)"; Scaffold008 rebuild exon 580000 580263 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; Scaffold008 rebuild exon 580320 580455 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; Scaffold008 rebuild exon 580596 580745 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; Scaffold008 rebuild exon 580813 581083 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; Scaffold008 rebuild exon 581252 581405 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; Scaffold008 rebuild exon 581489 581566 . - . gene_id "RvY_12882"; transcript_id "RvY_12882.1"; Scaffold008 rebuild transcript 582286 586830 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; gene_name "RhoGAP_Graf"; annotation "putative Rho GTPase-activating protein 26"; Pfam "[RhoGAP]|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, Scaffold008 rebuild exon 582286 582399 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 582468 582561 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 582653 582810 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 582876 582947 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 583084 583296 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 583370 583412 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 583489 583550 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 583745 583801 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 583868 583940 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584034 584101 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584191 584261 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584325 584460 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584522 584564 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584618 584686 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584760 584834 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 584920 585001 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 585087 585145 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 585213 585321 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 585430 585589 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 585660 586390 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 586487 586641 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild exon 586730 586830 . + . gene_id "RvY_12883"; transcript_id "RvY_12883.1"; Scaffold008 rebuild transcript 587657 589790 . + . gene_id "RvY_12884"; transcript_id "RvY_12884.1"; gene_name "uvsE"; annotation "UV DNA damage endonuclease [EC:3.-.-.-]"; Pfam "[UvdE] UV-endonuclease UvdE"; CDD "putative UV damage endonuclease; Provisional"; EC "EC3.-.-.-"; KO "K13281"; similar_genes "UVE1_SCHPO(e-value:1.1e-14;bit-score:78.0)"; Scaffold008 rebuild exon 587657 588140 . + . gene_id "RvY_12884"; transcript_id "RvY_12884.1"; Scaffold008 rebuild exon 588323 588501 . + . gene_id "RvY_12884"; transcript_id "RvY_12884.1"; Scaffold008 rebuild exon 588574 588634 . + . gene_id "RvY_12884"; transcript_id "RvY_12884.1"; Scaffold008 rebuild exon 588736 589124 . + . gene_id "RvY_12884"; transcript_id "RvY_12884.1"; Scaffold008 rebuild exon 589350 589790 . + . gene_id "RvY_12884"; transcript_id "RvY_12884.1"; Scaffold008 rebuild transcript 591938 594511 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.1"; gene_name "(1)HTR7"; annotation "(1)5-hydroxytryptamine (serotonin) receptor 7(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04163"; similar_genes "(1)ADA1A_RABIT(e-value:1.2e-15;bit-score:81.0)"; Scaffold008 rebuild exon 591938 592189 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.1"; Scaffold008 rebuild exon 592734 592871 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.1"; Scaffold008 rebuild exon 593171 593547 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.1"; Scaffold008 rebuild exon 594226 594511 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.1"; Scaffold008 rebuild transcript 593363 594786 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.2"; gene_name "(1)HTR7"; annotation "(1)5-hydroxytryptamine (serotonin) receptor 7(2)hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04163"; similar_genes "(1)ADA1A_RABIT(e-value:1.2e-15;bit-score:81.0)"; Scaffold008 rebuild exon 593363 593547 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.2"; Scaffold008 rebuild exon 594226 594416 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.2"; Scaffold008 rebuild exon 594506 594786 . + . gene_id "RvY_12885"; transcript_id "RvY_12885.2"; Scaffold008 rebuild transcript 595473 596662 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 595473 595583 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 595651 595712 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 595787 595830 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 595962 596007 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 596179 596229 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 596306 596332 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 596419 596503 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild exon 596594 596662 . - . gene_id "RvY_12886"; transcript_id "RvY_12886.1"; Scaffold008 rebuild transcript 597493 598242 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 597493 597883 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.1"; Scaffold008 rebuild exon 598091 598151 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.1"; Scaffold008 rebuild exon 598221 598242 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.1"; Scaffold008 rebuild transcript 597493 597995 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 597493 597883 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.2"; Scaffold008 rebuild exon 597976 597995 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.2"; Scaffold008 rebuild transcript 598134 598550 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.3"; annotation "hypothetical protein."; Scaffold008 rebuild exon 598134 598151 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.3"; Scaffold008 rebuild exon 598221 598550 . - . gene_id "RvY_12887"; transcript_id "RvY_12887.3"; Scaffold008 rebuild transcript 599599 601003 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold008 rebuild exon 599599 599687 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild exon 599818 599941 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild exon 600089 600179 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild exon 600255 600322 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild exon 600409 600525 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild exon 600605 600754 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild exon 600962 601003 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.1"; Scaffold008 rebuild transcript 600370 601003 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.2"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold008 rebuild exon 600370 600525 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.2"; Scaffold008 rebuild exon 600605 600754 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.2"; Scaffold008 rebuild exon 600962 601003 . - . gene_id "RvY_12888"; transcript_id "RvY_12888.2"; Scaffold008 rebuild transcript 602336 607277 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; gene_name "PRK07764"; annotation "hypothetical protein."; CDD "DNA polymerase III subunits gamma and tau; Validated"; Scaffold008 rebuild exon 602336 602415 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 602496 602580 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 602815 602947 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 603008 603207 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 603269 603446 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 603522 603573 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 603679 603765 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 603856 604017 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 605011 605049 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 605137 605601 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 605797 606261 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 606346 606618 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 606684 606734 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 606825 606980 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild exon 607154 607277 . - . gene_id "RvY_12889"; transcript_id "RvY_12889.1"; Scaffold008 rebuild transcript 608418 611217 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold008 rebuild exon 608418 608508 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 608612 609058 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 609290 609375 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 609508 609658 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 609740 609899 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 610116 610454 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 610508 610685 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 610744 610809 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 610882 610998 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild exon 611059 611217 . + . gene_id "RvY_12890"; transcript_id "RvY_12890.1"; Scaffold008 rebuild transcript 613827 616047 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold008 rebuild exon 613827 614668 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild exon 614735 614964 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild exon 615056 615086 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild exon 615150 615415 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild exon 615475 615560 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild exon 615627 615743 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild exon 615817 616047 . + . gene_id "RvY_12891"; transcript_id "RvY_12891.1"; Scaffold008 rebuild transcript 616422 616679 . - . gene_id "RvY_12892"; transcript_id "RvY_12892.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 616422 616679 . - . gene_id "RvY_12892"; transcript_id "RvY_12892.1"; Scaffold008 rebuild transcript 616920 617099 . - . gene_id "RvY_12893"; transcript_id "RvY_12893.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 616920 617099 . - . gene_id "RvY_12893"; transcript_id "RvY_12893.1"; Scaffold008 rebuild transcript 617285 618156 . - . gene_id "RvY_12894"; transcript_id "RvY_12894.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 617285 617470 . - . gene_id "RvY_12894"; transcript_id "RvY_12894.1"; Scaffold008 rebuild exon 617546 617611 . - . gene_id "RvY_12894"; transcript_id "RvY_12894.1"; Scaffold008 rebuild exon 617861 618033 . - . gene_id "RvY_12894"; transcript_id "RvY_12894.1"; Scaffold008 rebuild exon 618060 618156 . - . gene_id "RvY_12894"; transcript_id "RvY_12894.1"; Scaffold008 rebuild transcript 622164 623532 . + . gene_id "RvY_12895"; transcript_id "RvY_12895.1"; gene_name "MAPRE"; annotation "putative Microtubule-associated protein RP/EB family member 3"; Pfam "[CH] Calponin homology (CH) domain|[EB1] EB1-like C-terminal motif"; CDD "Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]"; KO "K10436"; similar_genes "MARE3_RAT(e-value:4.6e-45;bit-score:179.0)"; Scaffold008 rebuild exon 622164 622442 . + . gene_id "RvY_12895"; transcript_id "RvY_12895.1"; Scaffold008 rebuild exon 622527 622758 . + . gene_id "RvY_12895"; transcript_id "RvY_12895.1"; Scaffold008 rebuild exon 622871 623097 . + . gene_id "RvY_12895"; transcript_id "RvY_12895.1"; Scaffold008 rebuild exon 623180 623335 . + . gene_id "RvY_12895"; transcript_id "RvY_12895.1"; Scaffold008 rebuild exon 623422 623532 . + . gene_id "RvY_12895"; transcript_id "RvY_12895.1"; Scaffold008 rebuild transcript 624032 625328 . + . gene_id "RvY_12896"; transcript_id "RvY_12896.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 624032 624077 . + . gene_id "RvY_12896"; transcript_id "RvY_12896.1"; Scaffold008 rebuild exon 624278 624840 . + . gene_id "RvY_12896"; transcript_id "RvY_12896.1"; Scaffold008 rebuild exon 624929 625096 . + . gene_id "RvY_12896"; transcript_id "RvY_12896.1"; Scaffold008 rebuild exon 625167 625328 . + . gene_id "RvY_12896"; transcript_id "RvY_12896.1"; Scaffold008 rebuild transcript 625559 628911 . + . gene_id "RvY_12897"; transcript_id "RvY_12897.1"; annotation "hypothetical protein."; Pfam "[C2]"; Scaffold008 rebuild exon 625559 626607 . + . gene_id "RvY_12897"; transcript_id "RvY_12897.1"; Scaffold008 rebuild exon 626811 627739 . + . gene_id "RvY_12897"; transcript_id "RvY_12897.1"; Scaffold008 rebuild exon 627803 628911 . + . gene_id "RvY_12897"; transcript_id "RvY_12897.1"; Scaffold008 rebuild transcript 628805 631182 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; gene_name "SLC22A5"; annotation "MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 5"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; KO "K08202"; Scaffold008 rebuild exon 628805 629068 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; Scaffold008 rebuild exon 629152 629255 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; Scaffold008 rebuild exon 629333 629524 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; Scaffold008 rebuild exon 629592 630158 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; Scaffold008 rebuild exon 630488 631070 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; Scaffold008 rebuild exon 631147 631182 . - . gene_id "RvY_12898"; transcript_id "RvY_12898.1"; Scaffold008 rebuild transcript 632102 633413 . - . gene_id "RvY_12899"; transcript_id "RvY_12899.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 632102 632329 . - . gene_id "RvY_12899"; transcript_id "RvY_12899.1"; Scaffold008 rebuild exon 632560 632621 . - . gene_id "RvY_12899"; transcript_id "RvY_12899.1"; Scaffold008 rebuild exon 633284 633413 . - . gene_id "RvY_12899"; transcript_id "RvY_12899.1"; Scaffold008 rebuild transcript 633940 634257 . - . gene_id "RvY_12900"; transcript_id "RvY_12900.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold008 rebuild exon 633940 634257 . - . gene_id "RvY_12900"; transcript_id "RvY_12900.1"; Scaffold008 rebuild transcript 634687 635053 . - . gene_id "RvY_12901"; transcript_id "RvY_12901.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 634687 634724 . - . gene_id "RvY_12901"; transcript_id "RvY_12901.1"; Scaffold008 rebuild exon 634945 635053 . - . gene_id "RvY_12901"; transcript_id "RvY_12901.1"; Scaffold008 rebuild transcript 636201 638591 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; gene_name "POU6F"; annotation "POU domain, class 6, transcription factor 1"; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; CDD "Found in Pit-Oct-Unc transcription factors."; KO "K09368"; similar_genes "(1)PO6F1_RAT(e-value:3.2e-67;bit-score:252.0)(2)PO6F1_RAT(e-value:6.0e-64;bit-score:241.0)"; Scaffold008 rebuild exon 636201 636246 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 636335 636410 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 636467 636687 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 636915 636964 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 637026 637077 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 637142 637355 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 637537 637948 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 638024 638254 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 638338 638489 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild exon 638558 638591 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.1"; Scaffold008 rebuild transcript 636331 638591 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; gene_name "POU6F"; annotation "POU domain, class 6, transcription factor 1"; Pfam "[Pou] Pou domain - N-terminal to homeobox domain|[Homeobox]"; CDD "Found in Pit-Oct-Unc transcription factors."; KO "K09368"; similar_genes "(1)PO6F1_RAT(e-value:3.2e-67;bit-score:252.0)(2)PO6F1_RAT(e-value:6.0e-64;bit-score:241.0)"; Scaffold008 rebuild exon 636331 636410 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 636467 636687 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 636915 636964 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 637026 637077 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 637142 637355 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 637537 637948 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 638024 638254 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 638338 638489 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild exon 638558 638591 . - . gene_id "RvY_12902"; transcript_id "RvY_12902.2"; Scaffold008 rebuild transcript 642177 643658 . + . gene_id "RvY_12903"; transcript_id "RvY_12903.1"; gene_name "WARS"; annotation "tryptophanyl-tRNA synthetase [EC:6.1.1.2]"; Pfam "[tRNA-synt_1b] tRNA synthetases class I (W and Y)"; CDD "tryptophanyl-tRNA synthetase; Reviewed"; EC "EC6.1.1.2"; KO "K01867"; similar_genes "SYW_BACST(e-value:1.1e-14;bit-score:78.0)"; Scaffold008 rebuild exon 642177 642722 . + . gene_id "RvY_12903"; transcript_id "RvY_12903.1"; Scaffold008 rebuild exon 643035 643658 . + . gene_id "RvY_12903"; transcript_id "RvY_12903.1"; Scaffold008 rebuild transcript 644208 646166 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; annotation "hypothetical protein."; Pfam "[DUF2414]"; Scaffold008 rebuild exon 644208 644485 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild exon 644570 644598 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild exon 644807 644914 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild exon 644986 645403 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild exon 645489 645653 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild exon 645723 645857 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild exon 645911 646166 . + . gene_id "RvY_12904"; transcript_id "RvY_12904.1"; Scaffold008 rebuild transcript 647362 651120 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; gene_name "K01513"; annotation "nucleotide pyrophosphatase [EC:3.6.1.9]"; Pfam "[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase|[Endonuclease_NS] DNA/RNA non-specific endonuclease"; EC "EC3.1.4.1|EC3.6.1.9"; KO "K01513"; similar_genes "ENPP3_RAT(e-value:4.9e-19;bit-score:92.0)"; Scaffold008 rebuild exon 647362 647385 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 647478 647650 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 647761 647801 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 647897 648148 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 648238 648308 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 648384 648502 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 648595 648632 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 648710 648957 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 649033 649273 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 649482 650002 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 650218 650353 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 650432 650633 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 650721 650874 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild exon 650962 651120 . + . gene_id "RvY_12905"; transcript_id "RvY_12905.1"; Scaffold008 rebuild transcript 651062 651663 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 651062 651468 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.1"; Scaffold008 rebuild exon 651543 651663 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.1"; Scaffold008 rebuild transcript 651130 651663 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 651130 651179 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.2"; Scaffold008 rebuild exon 651274 651468 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.2"; Scaffold008 rebuild exon 651543 651663 . - . gene_id "RvY_12906"; transcript_id "RvY_12906.2"; Scaffold008 rebuild transcript 654197 656977 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; gene_name "K00666"; annotation "putative Acyl-CoA synthetase family member 2, mitochondrial"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "acyl-CoA synthetase; Validated"; EC "EC6.2.1.-"; KO "K00666"; similar_genes "ACSF2_PONAB(e-value:6.2e-32;bit-score:135.0)"; Scaffold008 rebuild exon 654197 654252 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 654336 654636 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 654727 654929 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 654990 655146 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 655244 655274 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 655329 655405 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 655648 655813 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 655888 655974 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 656061 656233 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 656304 656452 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 656505 656751 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild exon 656822 656977 . + . gene_id "RvY_12907"; transcript_id "RvY_12907.1"; Scaffold008 rebuild transcript 657096 658363 . - . gene_id "RvY_12908"; transcript_id "RvY_12908.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 657096 657288 . - . gene_id "RvY_12908"; transcript_id "RvY_12908.1"; Scaffold008 rebuild exon 657362 657467 . - . gene_id "RvY_12908"; transcript_id "RvY_12908.1"; Scaffold008 rebuild exon 657563 657784 . - . gene_id "RvY_12908"; transcript_id "RvY_12908.1"; Scaffold008 rebuild exon 657859 658363 . - . gene_id "RvY_12908"; transcript_id "RvY_12908.1"; Scaffold008 rebuild transcript 659474 659824 . - . gene_id "RvY_12909"; transcript_id "RvY_12909.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 659474 659710 . - . gene_id "RvY_12909"; transcript_id "RvY_12909.1"; Scaffold008 rebuild exon 659804 659824 . - . gene_id "RvY_12909"; transcript_id "RvY_12909.1"; Scaffold008 rebuild transcript 660565 660879 . - . gene_id "RvY_12910"; transcript_id "RvY_12910.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 660565 660879 . - . gene_id "RvY_12910"; transcript_id "RvY_12910.1"; Scaffold008 rebuild transcript 661281 663729 . - . gene_id "RvY_12911"; transcript_id "RvY_12911.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 661281 661648 . - . gene_id "RvY_12911"; transcript_id "RvY_12911.1"; Scaffold008 rebuild exon 661812 662546 . - . gene_id "RvY_12911"; transcript_id "RvY_12911.1"; Scaffold008 rebuild exon 662629 663108 . - . gene_id "RvY_12911"; transcript_id "RvY_12911.1"; Scaffold008 rebuild exon 663411 663729 . - . gene_id "RvY_12911"; transcript_id "RvY_12911.1"; Scaffold008 rebuild transcript 664535 667821 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; gene_name "CDC5L"; annotation "Cell division cycle 5-related protein"; Pfam "[Myb_DNA-binding] Myb-like DNA-binding domain|[Myb_DNA-bind_6] Myb-like DNA-binding domain|[Myb_Cef] pre-mRNA splicing factor component"; CDD "Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]"; KO "K12860"; similar_genes "CDC5L_NEMVE(e-value:1.2e-104;bit-score:377.0)"; Scaffold008 rebuild exon 664535 664683 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 664874 665035 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 665111 665341 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 665409 665643 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 665756 666221 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 666400 666728 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 666960 667601 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild exon 667705 667821 . + . gene_id "RvY_12912"; transcript_id "RvY_12912.1"; Scaffold008 rebuild transcript 668139 669771 . - . gene_id "RvY_12913"; transcript_id "RvY_12913.1"; gene_name "PSMB2"; annotation "20S proteasome subunit beta 4 [EC:3.4.25.1]"; Pfam "[Proteasome] Proteasome subunit"; CDD "proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02734"; Scaffold008 rebuild exon 668139 668243 . - . gene_id "RvY_12913"; transcript_id "RvY_12913.1"; Scaffold008 rebuild exon 668321 668533 . - . gene_id "RvY_12913"; transcript_id "RvY_12913.1"; Scaffold008 rebuild exon 668595 668788 . - . gene_id "RvY_12913"; transcript_id "RvY_12913.1"; Scaffold008 rebuild exon 669678 669771 . - . gene_id "RvY_12913"; transcript_id "RvY_12913.1"; Scaffold008 rebuild transcript 668868 669614 . + . gene_id "RvY_12914"; transcript_id "RvY_12914.1"; annotation "hypothetical protein."; Pfam "[IQ] IQ calmodulin-binding motif"; Scaffold008 rebuild exon 668868 669614 . + . gene_id "RvY_12914"; transcript_id "RvY_12914.1"; Scaffold008 rebuild transcript 670445 671984 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; gene_name "COPS6"; annotation "COP9 signalosome complex subunit 6"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease|[MitMem_reg] Maintenance of mitochondrial structure and function"; KO "K12179"; Scaffold008 rebuild exon 670445 670786 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; Scaffold008 rebuild exon 670857 671177 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; Scaffold008 rebuild exon 671247 671354 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; Scaffold008 rebuild exon 671435 671526 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; Scaffold008 rebuild exon 671587 671718 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; Scaffold008 rebuild exon 671801 671984 . - . gene_id "RvY_12915"; transcript_id "RvY_12915.1"; Scaffold008 rebuild transcript 675990 680972 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold008 rebuild exon 675990 676107 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild exon 676179 676776 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild exon 676983 677565 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild exon 678575 679220 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild exon 679278 679462 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild exon 679504 680322 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild exon 680934 680972 . + . gene_id "RvY_12916"; transcript_id "RvY_12916.1"; Scaffold008 rebuild transcript 681461 682212 . - . gene_id "RvY_12917"; transcript_id "RvY_12917.1"; gene_name "eIF-5A"; annotation "Eukaryotic translation initiation factor 5A"; Pfam "[eIF-5a] Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold"; CDD "translation initiation factor eIF-5A. Observed in eukaryotes and archaea."; KO "K03263"; similar_genes "IF5A_SPOEX(e-value:1.1e-52;bit-score:204.0)"; Scaffold008 rebuild exon 681461 681532 . - . gene_id "RvY_12917"; transcript_id "RvY_12917.1"; Scaffold008 rebuild exon 681651 681785 . - . gene_id "RvY_12917"; transcript_id "RvY_12917.1"; Scaffold008 rebuild exon 681860 681964 . - . gene_id "RvY_12917"; transcript_id "RvY_12917.1"; Scaffold008 rebuild exon 682036 682212 . - . gene_id "RvY_12917"; transcript_id "RvY_12917.1"; Scaffold008 rebuild transcript 682799 683305 . + . gene_id "RvY_12918"; transcript_id "RvY_12918.1"; gene_name "RP-S21e"; annotation "small subunit ribosomal protein S21e"; Pfam "[Ribosomal_S21e] Ribosomal protein S21e"; KO "K02971"; similar_genes "RS211_ARATH(e-value:1.2e-13;bit-score:74.0)"; Scaffold008 rebuild exon 682799 682848 . + . gene_id "RvY_12918"; transcript_id "RvY_12918.1"; Scaffold008 rebuild exon 682905 682968 . + . gene_id "RvY_12918"; transcript_id "RvY_12918.1"; Scaffold008 rebuild exon 683171 683305 . + . gene_id "RvY_12918"; transcript_id "RvY_12918.1"; Scaffold008 rebuild transcript 683891 684292 . - . gene_id "RvY_12919"; transcript_id "RvY_12919.1"; gene_name "ATPeVF"; annotation "putative Probable V-type proton ATPase subunit F"; Pfam "[ATP-synt_F] ATP synthase (F/14-kDa) subunit"; CDD "vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit"; EC "EC3.6.3.14"; KO "K02151"; similar_genes "VATF_CAEEL(e-value:5.5e-35;bit-score:145.0)"; Scaffold008 rebuild exon 683891 684292 . - . gene_id "RvY_12919"; transcript_id "RvY_12919.1"; Scaffold008 rebuild transcript 684923 687750 . + . gene_id "RvY_12920"; transcript_id "RvY_12920.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold008 rebuild exon 684923 686250 . + . gene_id "RvY_12920"; transcript_id "RvY_12920.1"; Scaffold008 rebuild exon 686319 687750 . + . gene_id "RvY_12920"; transcript_id "RvY_12920.1"; Scaffold008 rebuild transcript 687969 690334 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; gene_name "USP14"; annotation "putative Ubiquitin carboxyl-terminal hydrolase 14"; Pfam "[ubiquitin] Ubiquitin family|[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome."; EC "EC3.1.2.15"; KO "K11843"; similar_genes "UBP14_RABIT(e-value:8.1e-32;bit-score:135.0)"; Scaffold008 rebuild exon 687969 688174 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 688236 688340 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 688412 688481 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 688539 688664 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 688734 688924 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 688990 689260 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 689342 689459 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 689527 689630 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 689761 689904 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 689995 690065 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 690153 690227 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild exon 690319 690334 . - . gene_id "RvY_12921"; transcript_id "RvY_12921.1"; Scaffold008 rebuild transcript 690977 692456 . + . gene_id "RvY_12922"; transcript_id "RvY_12922.1"; gene_name "CANT1"; annotation "Soluble calcium-activated nucleotidase 1"; Pfam "[Apyrase]"; EC "EC3.6.1.6"; KO "K12304"; similar_genes "CANT1_HUMAN(e-value:2.3e-78;bit-score:289.0)"; Scaffold008 rebuild exon 690977 691149 . + . gene_id "RvY_12922"; transcript_id "RvY_12922.1"; Scaffold008 rebuild exon 691232 691674 . + . gene_id "RvY_12922"; transcript_id "RvY_12922.1"; Scaffold008 rebuild exon 691879 692456 . + . gene_id "RvY_12922"; transcript_id "RvY_12922.1"; Scaffold008 rebuild transcript 692954 696895 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; annotation "hypothetical protein."; Pfam "[DZR] Double zinc ribbon"; Scaffold008 rebuild exon 692954 693014 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 693098 693257 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 693341 693490 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 693575 693754 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 693828 694010 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 694083 694505 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 694598 694862 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 695181 696082 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 696288 696720 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild exon 696788 696895 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.1"; Scaffold008 rebuild transcript 694075 696895 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.2"; annotation "hypothetical protein."; Pfam "[DZR] Double zinc ribbon"; Scaffold008 rebuild exon 694075 694505 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.2"; Scaffold008 rebuild exon 694598 694862 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.2"; Scaffold008 rebuild exon 695181 696082 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.2"; Scaffold008 rebuild exon 696288 696720 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.2"; Scaffold008 rebuild exon 696788 696895 . - . gene_id "RvY_12923"; transcript_id "RvY_12923.2"; Scaffold008 rebuild transcript 700391 702440 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.1"; gene_name "(1)HCRTR2"; annotation "(1)hypocretin (orexin) receptor 2(2,3)hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04239"; similar_genes "(1)OX2R_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold008 rebuild exon 700391 700771 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.1"; Scaffold008 rebuild exon 702113 702240 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.1"; Scaffold008 rebuild exon 702347 702440 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.1"; Scaffold008 rebuild transcript 698029 702236 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.2"; gene_name "(1)HCRTR2"; annotation "(1)hypocretin (orexin) receptor 2(2,3)hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04239"; similar_genes "(1)OX2R_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold008 rebuild exon 698029 698173 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.2"; Scaffold008 rebuild exon 698450 698585 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.2"; Scaffold008 rebuild exon 702113 702236 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.2"; Scaffold008 rebuild transcript 697764 698156 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.3"; gene_name "(1)HCRTR2"; annotation "(1)hypocretin (orexin) receptor 2(2,3)hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "(1)K04239"; similar_genes "(1)OX2R_HUMAN(e-value:6.9e-12;bit-score:69.0)"; Scaffold008 rebuild exon 697764 698156 . + . gene_id "RvY_12924"; transcript_id "RvY_12924.3"; Scaffold008 rebuild transcript 702760 704423 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 702760 702762 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.1"; Scaffold008 rebuild exon 702901 703256 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.1"; Scaffold008 rebuild exon 703931 704043 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.1"; Scaffold008 rebuild exon 704209 704423 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.1"; Scaffold008 rebuild transcript 703994 704647 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 703994 704043 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.2"; Scaffold008 rebuild exon 704209 704647 . + . gene_id "RvY_12925"; transcript_id "RvY_12925.2"; Scaffold008 rebuild transcript 704872 710504 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_23] AAA domain"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; similar_genes "SMC5_CHICK(e-value:6.2e-15;bit-score:79.0)"; Scaffold008 rebuild exon 704872 705243 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 705325 705417 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 705662 706069 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 706136 706231 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 706322 706456 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 706527 706652 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 706719 706836 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 707029 707538 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 707732 707955 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 708060 708217 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 708288 708405 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 708641 708778 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 708899 709138 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 709197 709409 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 709616 709841 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 709904 710098 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild exon 710449 710504 . - . gene_id "RvY_12926"; transcript_id "RvY_12926.1"; Scaffold008 rebuild transcript 710857 711012 . + . gene_id "RvY_12927"; transcript_id "RvY_12927.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 710857 711012 . + . gene_id "RvY_12927"; transcript_id "RvY_12927.1"; Scaffold008 rebuild transcript 711558 712750 . + . gene_id "RvY_12928"; transcript_id "RvY_12928.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 711558 712152 . + . gene_id "RvY_12928"; transcript_id "RvY_12928.1"; Scaffold008 rebuild exon 712214 712667 . + . gene_id "RvY_12928"; transcript_id "RvY_12928.1"; Scaffold008 rebuild exon 712744 712750 . + . gene_id "RvY_12928"; transcript_id "RvY_12928.1"; Scaffold008 rebuild transcript 712831 713316 . + . gene_id "RvY_12929"; transcript_id "RvY_12929.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 712831 712974 . + . gene_id "RvY_12929"; transcript_id "RvY_12929.1"; Scaffold008 rebuild exon 713182 713316 . + . gene_id "RvY_12929"; transcript_id "RvY_12929.1"; Scaffold008 rebuild transcript 713438 714354 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 713438 713479 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.1"; Scaffold008 rebuild exon 713559 713714 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.1"; Scaffold008 rebuild exon 713778 713863 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.1"; Scaffold008 rebuild exon 713936 714034 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.1"; Scaffold008 rebuild exon 714222 714354 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.1"; Scaffold008 rebuild transcript 713438 714438 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 713438 713479 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; Scaffold008 rebuild exon 713559 713714 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; Scaffold008 rebuild exon 713778 713863 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; Scaffold008 rebuild exon 713936 714034 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; Scaffold008 rebuild exon 714222 714324 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; Scaffold008 rebuild exon 714421 714438 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.2"; Scaffold008 rebuild transcript 713438 714186 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.3"; annotation "hypothetical protein."; Scaffold008 rebuild exon 713438 713479 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.3"; Scaffold008 rebuild exon 713559 713714 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.3"; Scaffold008 rebuild exon 713778 713863 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.3"; Scaffold008 rebuild exon 713936 714034 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.3"; Scaffold008 rebuild exon 714174 714186 . + . gene_id "RvY_12930"; transcript_id "RvY_12930.3"; Scaffold008 rebuild transcript 714866 715111 . + . gene_id "RvY_12931"; transcript_id "RvY_12931.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 714866 714940 . + . gene_id "RvY_12931"; transcript_id "RvY_12931.1"; Scaffold008 rebuild exon 715013 715111 . + . gene_id "RvY_12931"; transcript_id "RvY_12931.1"; Scaffold008 rebuild transcript 715135 715964 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 715135 715159 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.1"; Scaffold008 rebuild exon 715225 715352 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.1"; Scaffold008 rebuild exon 715509 715637 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.1"; Scaffold008 rebuild exon 715764 715841 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.1"; Scaffold008 rebuild exon 715905 715964 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.1"; Scaffold008 rebuild transcript 715135 715800 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 715135 715159 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.2"; Scaffold008 rebuild exon 715225 715352 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.2"; Scaffold008 rebuild exon 715509 715637 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.2"; Scaffold008 rebuild exon 715702 715800 . + . gene_id "RvY_12932"; transcript_id "RvY_12932.2"; Scaffold008 rebuild transcript 717746 718933 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 717746 717856 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; Scaffold008 rebuild exon 717930 718031 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; Scaffold008 rebuild exon 718103 718188 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; Scaffold008 rebuild exon 718268 718439 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; Scaffold008 rebuild exon 718548 718690 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; Scaffold008 rebuild exon 718774 718933 . + . gene_id "RvY_12933"; transcript_id "RvY_12933.1"; Scaffold008 rebuild transcript 719668 720766 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; annotation "UPF0424 protein C1orf128"; Pfam "[PITH]"; similar_genes "CA128_HUMAN(e-value:1.3e-61;bit-score:234.0)"; Scaffold008 rebuild exon 719668 719825 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; Scaffold008 rebuild exon 719918 719990 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; Scaffold008 rebuild exon 720073 720116 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; Scaffold008 rebuild exon 720181 720258 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; Scaffold008 rebuild exon 720364 720468 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; Scaffold008 rebuild exon 720556 720766 . + . gene_id "RvY_12934"; transcript_id "RvY_12934.1"; Scaffold008 rebuild transcript 720966 722235 . - . gene_id "RvY_12935"; transcript_id "RvY_12935.1"; annotation "putative 39S ribosomal protein L15, mitochondrial"; similar_genes "RM15_MOUSE(e-value:1.1e-31;bit-score:134.0)"; Scaffold008 rebuild exon 720966 721427 . - . gene_id "RvY_12935"; transcript_id "RvY_12935.1"; Scaffold008 rebuild exon 721553 721718 . - . gene_id "RvY_12935"; transcript_id "RvY_12935.1"; Scaffold008 rebuild exon 721806 721957 . - . gene_id "RvY_12935"; transcript_id "RvY_12935.1"; Scaffold008 rebuild exon 722131 722235 . - . gene_id "RvY_12935"; transcript_id "RvY_12935.1"; Scaffold008 rebuild transcript 723172 728323 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Pep_M12B_propep] Reprolysin family propeptide|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; EC "EC3.4.24.-"; similar_genes "ATS16_HUMAN(e-value:1.5e-07;bit-score:54.0)"; Scaffold008 rebuild exon 723172 723235 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 723524 723690 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 723773 723857 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 723937 724208 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 724401 724533 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 724600 724826 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 724898 725039 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 725295 725399 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 725555 725660 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 725718 725874 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 725945 726045 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 726116 726158 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 726227 726502 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 726607 727297 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 727388 727855 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 727926 728070 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild exon 728131 728323 . + . gene_id "RvY_12936"; transcript_id "RvY_12936.1"; Scaffold008 rebuild transcript 728567 731628 . - . gene_id "RvY_12937"; transcript_id "RvY_12937.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 728567 729216 . - . gene_id "RvY_12937"; transcript_id "RvY_12937.1"; Scaffold008 rebuild exon 729342 730302 . - . gene_id "RvY_12937"; transcript_id "RvY_12937.1"; Scaffold008 rebuild exon 730372 730628 . - . gene_id "RvY_12937"; transcript_id "RvY_12937.1"; Scaffold008 rebuild exon 730710 731628 . - . gene_id "RvY_12937"; transcript_id "RvY_12937.1"; Scaffold008 rebuild transcript 732044 732427 . - . gene_id "RvY_12938"; transcript_id "RvY_12938.1"; gene_name "LSM2"; annotation "putative U6 snRNA-associated Sm-like protein LSm2"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K12621"; similar_genes "LSM2_MOUSE(e-value:2.1e-34;bit-score:143.0)"; Scaffold008 rebuild exon 732044 732427 . - . gene_id "RvY_12938"; transcript_id "RvY_12938.1"; Scaffold008 rebuild transcript 733176 733406 . - . gene_id "RvY_12939"; transcript_id "RvY_12939.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 733176 733406 . - . gene_id "RvY_12939"; transcript_id "RvY_12939.1"; Scaffold008 rebuild transcript 733182 736307 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; gene_name "pepP"; annotation "putative Xaa-Pro aminopeptidase 1"; Pfam "[Creatinase_N] Creatinase/Prolidase N-terminal domain|[Peptidase_M24] Metallopeptidase family M24"; CDD "X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide."; EC "EC3.4.11.9"; KO "K01262"; similar_genes "XPP1_RAT(e-value:3.4e-26;bit-score:116.0)"; Scaffold008 rebuild exon 733182 733390 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 733505 733991 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 734168 734570 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 734654 734801 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 734874 735136 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 735205 735510 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 735596 735694 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 735765 735796 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 735863 735950 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild exon 736024 736307 . + . gene_id "RvY_12940"; transcript_id "RvY_12940.1"; Scaffold008 rebuild transcript 736619 738225 . - . gene_id "RvY_12941"; transcript_id "RvY_12941.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 736619 736628 . - . gene_id "RvY_12941"; transcript_id "RvY_12941.1"; Scaffold008 rebuild exon 737855 738225 . - . gene_id "RvY_12941"; transcript_id "RvY_12941.1"; Scaffold008 rebuild transcript 740787 742380 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; gene_name "STX16"; annotation "syntaxin 16"; Pfam "[SNARE]|[Syntaxin]"; CDD "t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]"; KO "K08489"; similar_genes "STX16_MOUSE(e-value:8.4e-19;bit-score:92.0)"; Scaffold008 rebuild exon 740787 740969 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild exon 741213 741362 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild exon 741429 741550 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild exon 741617 741907 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild exon 741981 742033 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild exon 742089 742216 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild exon 742282 742380 . - . gene_id "RvY_12942"; transcript_id "RvY_12942.1"; Scaffold008 rebuild transcript 742794 743847 . + . gene_id "RvY_12943"; transcript_id "RvY_12943.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 742794 742851 . + . gene_id "RvY_12943"; transcript_id "RvY_12943.1"; Scaffold008 rebuild exon 743216 743497 . + . gene_id "RvY_12943"; transcript_id "RvY_12943.1"; Scaffold008 rebuild exon 743571 743705 . + . gene_id "RvY_12943"; transcript_id "RvY_12943.1"; Scaffold008 rebuild exon 743780 743847 . + . gene_id "RvY_12943"; transcript_id "RvY_12943.1"; Scaffold008 rebuild transcript 744054 744715 . + . gene_id "RvY_12944"; transcript_id "RvY_12944.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 744054 744145 . + . gene_id "RvY_12944"; transcript_id "RvY_12944.1"; Scaffold008 rebuild exon 744238 744715 . + . gene_id "RvY_12944"; transcript_id "RvY_12944.1"; Scaffold008 rebuild transcript 747143 747367 . + . gene_id "RvY_12945"; transcript_id "RvY_12945.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 747143 747367 . + . gene_id "RvY_12945"; transcript_id "RvY_12945.1"; Scaffold008 rebuild transcript 749090 749254 . - . gene_id "RvY_12946"; transcript_id "RvY_12946.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 749090 749254 . - . gene_id "RvY_12946"; transcript_id "RvY_12946.1"; Scaffold008 rebuild transcript 749648 749917 . - . gene_id "RvY_12947"; transcript_id "RvY_12947.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 749648 749830 . - . gene_id "RvY_12947"; transcript_id "RvY_12947.1"; Scaffold008 rebuild exon 749900 749917 . - . gene_id "RvY_12947"; transcript_id "RvY_12947.1"; Scaffold008 rebuild transcript 750457 752381 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; gene_name "WD40"; annotation "putative Nucleoporin seh1"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14299"; similar_genes "SEH1_DANRE(e-value:2.2e-36;bit-score:150.0)"; Scaffold008 rebuild exon 750457 750636 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 750744 750900 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 751043 751158 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 751267 751490 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 751567 751603 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 751675 751778 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 751896 752092 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild exon 752167 752381 . + . gene_id "RvY_12948"; transcript_id "RvY_12948.1"; Scaffold008 rebuild transcript 752468 755034 . - . gene_id "RvY_12949"; transcript_id "RvY_12949.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold008 rebuild exon 752468 752564 . - . gene_id "RvY_12949"; transcript_id "RvY_12949.1"; Scaffold008 rebuild exon 752757 753039 . - . gene_id "RvY_12949"; transcript_id "RvY_12949.1"; Scaffold008 rebuild exon 753163 753446 . - . gene_id "RvY_12949"; transcript_id "RvY_12949.1"; Scaffold008 rebuild exon 753518 755034 . - . gene_id "RvY_12949"; transcript_id "RvY_12949.1"; Scaffold008 rebuild transcript 758322 759291 . + . gene_id "RvY_12950"; transcript_id "RvY_12950.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold008 rebuild exon 758322 758405 . + . gene_id "RvY_12950"; transcript_id "RvY_12950.1"; Scaffold008 rebuild exon 758494 759291 . + . gene_id "RvY_12950"; transcript_id "RvY_12950.1"; Scaffold008 rebuild transcript 759288 761685 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; gene_name "COQ6"; annotation "ubiquinone biosynthesis monooxygenase Coq6 [EC:1.14.13.-]"; Pfam "[FAD_binding_3] FAD binding domain"; CDD "Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone"; EC "EC1.14.13.-"; KO "K06126"; similar_genes "COQ6_HUMAN(e-value:2.2e-23;bit-score:107.0)"; Scaffold008 rebuild exon 759288 759600 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 759769 759892 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 759979 760057 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 760153 760260 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 760336 760398 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 760505 760612 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 760682 760993 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 761132 761190 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 761252 761386 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild exon 761487 761685 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.1"; Scaffold008 rebuild transcript 759288 761616 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; gene_name "COQ6"; annotation "ubiquinone biosynthesis monooxygenase Coq6 [EC:1.14.13.-]"; Pfam "[FAD_binding_3] FAD binding domain"; CDD "Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone"; EC "EC1.14.13.-"; KO "K06126"; similar_genes "COQ6_HUMAN(e-value:2.2e-23;bit-score:107.0)"; Scaffold008 rebuild exon 759288 759600 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 759769 759892 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 759979 760057 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 760153 760260 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 760336 760398 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 760505 760612 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 760682 760993 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 761132 761190 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 761252 761386 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild exon 761487 761616 . - . gene_id "RvY_12951"; transcript_id "RvY_12951.2"; Scaffold008 rebuild transcript 762088 763111 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.1"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; similar_genes "AN32A_DROPS(e-value:2.9e-06;bit-score:50.0)"; Scaffold008 rebuild exon 762088 762255 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.1"; Scaffold008 rebuild exon 762323 762700 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.1"; Scaffold008 rebuild exon 762762 762804 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.1"; Scaffold008 rebuild exon 762936 763111 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.1"; Scaffold008 rebuild transcript 762088 762709 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.2"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_6] Leucine Rich repeat|[LRR_7] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; similar_genes "AN32A_DROPS(e-value:2.9e-06;bit-score:50.0)"; Scaffold008 rebuild exon 762088 762255 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.2"; Scaffold008 rebuild exon 762323 762709 . + . gene_id "RvY_12952"; transcript_id "RvY_12952.2"; Scaffold008 rebuild transcript 764366 766185 . + . gene_id "RvY_12953"; transcript_id "RvY_12953.1"; annotation "hypothetical protein."; Pfam "[Trichoplein] Tumour suppressor, Mitostatin"; Scaffold008 rebuild exon 764366 764448 . + . gene_id "RvY_12953"; transcript_id "RvY_12953.1"; Scaffold008 rebuild exon 764518 764830 . + . gene_id "RvY_12953"; transcript_id "RvY_12953.1"; Scaffold008 rebuild exon 764926 765689 . + . gene_id "RvY_12953"; transcript_id "RvY_12953.1"; Scaffold008 rebuild exon 765754 765978 . + . gene_id "RvY_12953"; transcript_id "RvY_12953.1"; Scaffold008 rebuild exon 766044 766185 . + . gene_id "RvY_12953"; transcript_id "RvY_12953.1"; Scaffold008 rebuild transcript 766245 767867 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; gene_name "DSCC1"; annotation "sister chromatid cohesion protein DCC1"; Pfam "[DUF2036] Uncharacterized conserved protein (DUF2036)"; KO "K11271"; Scaffold008 rebuild exon 766245 766350 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 766408 766470 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 766532 766695 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 766775 767043 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 767102 767195 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 767269 767400 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 767503 767653 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild exon 767740 767867 . - . gene_id "RvY_12954"; transcript_id "RvY_12954.1"; Scaffold008 rebuild transcript 768695 769243 . + . gene_id "RvY_12955"; transcript_id "RvY_12955.1"; annotation "hypothetical protein."; Pfam "[MRP-L27] Mitochondrial ribosomal protein L27"; similar_genes "RM41A_XENLA(e-value:3.9e-08;bit-score:56.0)"; Scaffold008 rebuild exon 768695 769243 . + . gene_id "RvY_12955"; transcript_id "RvY_12955.1"; Scaffold008 rebuild transcript 771841 773005 . + . gene_id "RvY_12956"; transcript_id "RvY_12956.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 771841 771931 . + . gene_id "RvY_12956"; transcript_id "RvY_12956.1"; Scaffold008 rebuild exon 772544 772740 . + . gene_id "RvY_12956"; transcript_id "RvY_12956.1"; Scaffold008 rebuild exon 772844 773005 . + . gene_id "RvY_12956"; transcript_id "RvY_12956.1"; Scaffold008 rebuild transcript 776290 776553 . - . gene_id "RvY_12957"; transcript_id "RvY_12957.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 776290 776553 . - . gene_id "RvY_12957"; transcript_id "RvY_12957.1"; Scaffold008 rebuild transcript 775892 776524 . - . gene_id "RvY_12957"; transcript_id "RvY_12957.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 775892 775982 . - . gene_id "RvY_12957"; transcript_id "RvY_12957.2"; Scaffold008 rebuild exon 776286 776381 . - . gene_id "RvY_12957"; transcript_id "RvY_12957.2"; Scaffold008 rebuild exon 776469 776524 . - . gene_id "RvY_12957"; transcript_id "RvY_12957.2"; Scaffold008 rebuild transcript 777545 779512 . - . gene_id "RvY_12958"; transcript_id "RvY_12958.1"; gene_name "DNAJA3"; annotation "Protein tumorous imaginal discs, mitochondrial"; Pfam "[DnaJ_CXXCXGXG] DnaJ central domain|[DnaJ]|[DnaJ_C] DnaJ C terminal domain"; CDD "chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family."; KO "K09504"; similar_genes "TID_DROVI(e-value:6.9e-99;bit-score:358.0)"; Scaffold008 rebuild exon 777545 778092 . - . gene_id "RvY_12958"; transcript_id "RvY_12958.1"; Scaffold008 rebuild exon 778383 778793 . - . gene_id "RvY_12958"; transcript_id "RvY_12958.1"; Scaffold008 rebuild exon 778993 779512 . - . gene_id "RvY_12958"; transcript_id "RvY_12958.1"; Scaffold008 rebuild transcript 781817 785335 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; gene_name "TEF1"; annotation "HBS1-like protein"; Pfam "[DUF1916]|[MMR_HSR1] 50S ribosome-binding GTPase|[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU_D3] Elongation factor Tu C-terminal domain|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]"; KO "K14416"; similar_genes "HBS1L_RAT(e-value:1.0e-63;bit-score:241.0)"; Scaffold008 rebuild exon 781817 781828 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 781906 781950 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 782047 782187 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 782244 782503 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 782562 782688 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 782762 782808 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 782869 783329 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 783536 783772 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 783841 784114 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 784472 784513 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 784577 784612 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 784677 784808 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 784893 785057 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 785133 785204 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild exon 785296 785335 . - . gene_id "RvY_12959"; transcript_id "RvY_12959.1"; Scaffold008 rebuild transcript 786216 788525 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; similar_genes "MFS11_XENLA(e-value:2.0e-09;bit-score:60.0)"; Scaffold008 rebuild exon 786216 786374 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 786456 786474 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 786557 786657 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 786721 786763 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 786819 786969 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 787072 787125 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 787200 787382 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 787452 787483 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 787550 787744 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 787815 787983 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 788044 788084 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 788141 788235 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild exon 788313 788525 . + . gene_id "RvY_12960"; transcript_id "RvY_12960.1"; Scaffold008 rebuild transcript 789139 791633 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold008 rebuild exon 789139 789375 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 789456 789537 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 789598 789635 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 789707 789749 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 789950 790068 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 790141 790208 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 790268 790447 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 790510 790541 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 790638 790703 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 790772 791104 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 791165 791187 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 791265 791313 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 791378 791400 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild exon 791481 791633 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.1"; Scaffold008 rebuild transcript 789734 791633 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; gene_name "UNC-93"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[UNC-93] Ion channel regulatory protein UNC-93"; CDD "Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; Scaffold008 rebuild exon 789734 789749 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 789950 790068 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 790141 790208 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 790268 790447 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 790510 790703 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 790772 791104 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 791165 791187 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 791265 791313 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 791378 791400 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild exon 791481 791633 . + . gene_id "RvY_12961"; transcript_id "RvY_12961.2"; Scaffold008 rebuild transcript 791828 792257 . - . gene_id "RvY_12962"; transcript_id "RvY_12962.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 791828 792060 . - . gene_id "RvY_12962"; transcript_id "RvY_12962.1"; Scaffold008 rebuild exon 792146 792257 . - . gene_id "RvY_12962"; transcript_id "RvY_12962.1"; Scaffold008 rebuild transcript 792675 793030 . - . gene_id "RvY_12963"; transcript_id "RvY_12963.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 792675 792853 . - . gene_id "RvY_12963"; transcript_id "RvY_12963.1"; Scaffold008 rebuild exon 792916 793030 . - . gene_id "RvY_12963"; transcript_id "RvY_12963.1"; Scaffold008 rebuild transcript 793653 794609 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 793653 793665 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.1"; Scaffold008 rebuild exon 793906 793988 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.1"; Scaffold008 rebuild exon 794073 794138 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.1"; Scaffold008 rebuild exon 794199 794609 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.1"; Scaffold008 rebuild transcript 793653 794499 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 793653 793665 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.2"; Scaffold008 rebuild exon 793906 793988 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.2"; Scaffold008 rebuild exon 794073 794138 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.2"; Scaffold008 rebuild exon 794199 794361 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.2"; Scaffold008 rebuild exon 794495 794499 . + . gene_id "RvY_12964"; transcript_id "RvY_12964.2"; Scaffold008 rebuild transcript 796790 799323 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 796790 796880 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; Scaffold008 rebuild exon 796956 797303 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; Scaffold008 rebuild exon 797449 797811 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; Scaffold008 rebuild exon 798019 798324 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; Scaffold008 rebuild exon 798385 798597 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; Scaffold008 rebuild exon 798866 799323 . + . gene_id "RvY_12965"; transcript_id "RvY_12965.1"; Scaffold008 rebuild transcript 799894 801107 . + . gene_id "RvY_12966"; transcript_id "RvY_12966.1"; annotation "hypothetical protein."; Pfam "[Cluap1] Clusterin-associated protein-1"; Scaffold008 rebuild exon 799894 799915 . + . gene_id "RvY_12966"; transcript_id "RvY_12966.1"; Scaffold008 rebuild exon 800392 800513 . + . gene_id "RvY_12966"; transcript_id "RvY_12966.1"; Scaffold008 rebuild exon 800614 800709 . + . gene_id "RvY_12966"; transcript_id "RvY_12966.1"; Scaffold008 rebuild exon 800784 800867 . + . gene_id "RvY_12966"; transcript_id "RvY_12966.1"; Scaffold008 rebuild exon 800970 801107 . + . gene_id "RvY_12966"; transcript_id "RvY_12966.1"; Scaffold008 rebuild transcript 801184 801653 . + . gene_id "RvY_12967"; transcript_id "RvY_12967.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 801184 801306 . + . gene_id "RvY_12967"; transcript_id "RvY_12967.1"; Scaffold008 rebuild exon 801384 801653 . + . gene_id "RvY_12967"; transcript_id "RvY_12967.1"; Scaffold008 rebuild transcript 801896 806154 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 801896 802740 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; Scaffold008 rebuild exon 803035 803262 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; Scaffold008 rebuild exon 803327 803602 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; Scaffold008 rebuild exon 803697 804206 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; Scaffold008 rebuild exon 804384 805752 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; Scaffold008 rebuild exon 805828 806154 . - . gene_id "RvY_12968"; transcript_id "RvY_12968.1"; Scaffold008 rebuild transcript 807192 807678 . - . gene_id "RvY_12969"; transcript_id "RvY_12969.1"; annotation "hypothetical protein."; Pfam "[4F5] 4F5 protein family"; Scaffold008 rebuild exon 807192 807287 . - . gene_id "RvY_12969"; transcript_id "RvY_12969.1"; Scaffold008 rebuild exon 807428 807496 . - . gene_id "RvY_12969"; transcript_id "RvY_12969.1"; Scaffold008 rebuild exon 807610 807678 . - . gene_id "RvY_12969"; transcript_id "RvY_12969.1"; Scaffold008 rebuild transcript 808223 809055 . + . gene_id "RvY_12970"; transcript_id "RvY_12970.1"; gene_name "ITPA"; annotation "Inosine triphosphate pyrophosphatase"; Pfam "[Ham1p_like] Ham1 family"; CDD "NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate."; EC "EC3.6.1.19"; KO "K01519"; similar_genes "ITPA_MOUSE(e-value:7.2e-52;bit-score:201.0)"; Scaffold008 rebuild exon 808223 808312 . + . gene_id "RvY_12970"; transcript_id "RvY_12970.1"; Scaffold008 rebuild exon 808409 808562 . + . gene_id "RvY_12970"; transcript_id "RvY_12970.1"; Scaffold008 rebuild exon 808724 809055 . + . gene_id "RvY_12970"; transcript_id "RvY_12970.1"; Scaffold008 rebuild transcript 809148 810212 . - . gene_id "RvY_12971"; transcript_id "RvY_12971.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold008 rebuild exon 809148 810212 . - . gene_id "RvY_12971"; transcript_id "RvY_12971.1"; Scaffold008 rebuild transcript 810358 811739 . - . gene_id "RvY_12972"; transcript_id "RvY_12972.1"; gene_name "RRM"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[CSTF2_hinge] Hinge domain of cleavage stimulation factor subunit 2|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[CSTF_C] Transcription termination and cleavage factor C-terminal|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold008 rebuild exon 810358 810612 . - . gene_id "RvY_12972"; transcript_id "RvY_12972.1"; Scaffold008 rebuild exon 810686 811063 . - . gene_id "RvY_12972"; transcript_id "RvY_12972.1"; Scaffold008 rebuild exon 811137 811365 . - . gene_id "RvY_12972"; transcript_id "RvY_12972.1"; Scaffold008 rebuild exon 811475 811553 . - . gene_id "RvY_12972"; transcript_id "RvY_12972.1"; Scaffold008 rebuild exon 811634 811739 . - . gene_id "RvY_12972"; transcript_id "RvY_12972.1"; Scaffold008 rebuild transcript 812090 812473 . + . gene_id "RvY_12973"; transcript_id "RvY_12973.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 812090 812473 . + . gene_id "RvY_12973"; transcript_id "RvY_12973.1"; Scaffold008 rebuild transcript 812680 819888 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 812680 812892 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 817169 817315 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 817427 817547 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 817894 818027 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 818195 818647 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 819045 819303 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 819373 819570 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild exon 819809 819888 . + . gene_id "RvY_12974"; transcript_id "RvY_12974.1"; Scaffold008 rebuild transcript 821876 822932 . + . gene_id "RvY_12975"; transcript_id "RvY_12975.1"; gene_name "PHOSPHO1"; annotation "phosphoethanolamine/phosphocholine phosphatase [EC:3.1.3.75]"; Pfam "[Put_Phosphatase] Putative Phosphatase|[HAD] haloacid dehalogenase-like hydrolase"; CDD "Putative Phosphatase. This family contains a number of putative eukaryotic acid phosphatases. Some family members represent the products of the PSI14 phosphatase family in Lycopersicon esculentum (Tomato)."; EC "EC3.1.3.75"; KO "K06124"; Scaffold008 rebuild exon 821876 822416 . + . gene_id "RvY_12975"; transcript_id "RvY_12975.1"; Scaffold008 rebuild exon 822628 822932 . + . gene_id "RvY_12975"; transcript_id "RvY_12975.1"; Scaffold008 rebuild transcript 824092 825783 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; gene_name "(1)UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "(1)Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; similar_genes "(1)MFS11_MACFA(e-value:5.1e-06;bit-score:49.0)"; Scaffold008 rebuild exon 824092 824246 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 824312 824377 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 824453 824718 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 824797 824832 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 824899 825256 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 825335 825372 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 825443 825500 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 825604 825627 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild exon 825693 825783 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.1"; Scaffold008 rebuild transcript 823132 824687 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; gene_name "(1)UNC-93"; annotation "hypothetical protein."; Pfam "[UNC-93] Ion channel regulatory protein UNC-93"; CDD "(1)Ion channel regulatory protein UNC-93. This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein."; similar_genes "(1)MFS11_MACFA(e-value:5.1e-06;bit-score:49.0)"; Scaffold008 rebuild exon 823132 823392 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 823463 823534 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 823594 823616 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 823687 823727 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 823812 823877 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 823953 824107 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 824170 824246 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 824312 824377 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild exon 824453 824687 . - . gene_id "RvY_12976"; transcript_id "RvY_12976.2"; Scaffold008 rebuild transcript 827843 829821 . - . gene_id "RvY_12977"; transcript_id "RvY_12977.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 827843 827912 . - . gene_id "RvY_12977"; transcript_id "RvY_12977.1"; Scaffold008 rebuild exon 828014 828138 . - . gene_id "RvY_12977"; transcript_id "RvY_12977.1"; Scaffold008 rebuild exon 829678 829821 . - . gene_id "RvY_12977"; transcript_id "RvY_12977.1"; Scaffold008 rebuild transcript 830406 831843 . - . gene_id "RvY_12978"; transcript_id "RvY_12978.1"; gene_name "COG1073"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family"; CDD "Hydrolases of the alpha/beta superfamily [General function prediction only]"; EC "EC3.-.-.-"; similar_genes "F108A_RAT(e-value:3.6e-15;bit-score:79.0)"; Scaffold008 rebuild exon 830406 831109 . - . gene_id "RvY_12978"; transcript_id "RvY_12978.1"; Scaffold008 rebuild exon 831360 831843 . - . gene_id "RvY_12978"; transcript_id "RvY_12978.1"; Scaffold008 rebuild transcript 832540 834661 . + . gene_id "RvY_12979"; transcript_id "RvY_12979.1"; gene_name "PRI2"; annotation "putative DNA primase large subunit"; Pfam "[DNA_primase_lrg] Eukaryotic and archaeal DNA primase, large subunit"; CDD "Eukaryotic core primase: Large subunit, PriL. Primases synthesize the RNA primers required for DNA replication. Primases are grouped into two classes, bacteria/bacteriophage and archaeal/eukaryotic. The proteins in the two classes differ in structure and the replication apparatus components. Archaeal/eukaryotic core primase is a heterodimeric enzyme consisting of a small catalytic subunit (PriS) and a large subunit (PriL). In eukaryotic organisms, a heterotetrameric enzyme formed by DNA polymerase alpha, the B subunit and two primase subunits has primase activity. Although the catalytic activity resides within PriS, the PriL subunit is essential for primase function as disruption of the PriL gene in yeast is lethal. PriL is composed of two structural domains. Several functions have been proposed for PriL such as stabilization of the PriS, involvement in synthesis initiation, improvement of primase processivity, determination of product size and transfer of the products to DNA polymerase alpha."; EC "EC2.7.7.-"; KO "K02685"; similar_genes "PRI2_CAEEL(e-value:7.0e-31;bit-score:132.0)"; Scaffold008 rebuild exon 832540 832905 . + . gene_id "RvY_12979"; transcript_id "RvY_12979.1"; Scaffold008 rebuild exon 833097 833685 . + . gene_id "RvY_12979"; transcript_id "RvY_12979.1"; Scaffold008 rebuild exon 833891 834222 . + . gene_id "RvY_12979"; transcript_id "RvY_12979.1"; Scaffold008 rebuild exon 834290 834661 . + . gene_id "RvY_12979"; transcript_id "RvY_12979.1"; Scaffold008 rebuild transcript 834954 835576 . + . gene_id "RvY_12980"; transcript_id "RvY_12980.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 834954 835120 . + . gene_id "RvY_12980"; transcript_id "RvY_12980.1"; Scaffold008 rebuild exon 835360 835576 . + . gene_id "RvY_12980"; transcript_id "RvY_12980.1"; Scaffold008 rebuild transcript 836040 836558 . - . gene_id "RvY_12981"; transcript_id "RvY_12981.1"; gene_name "RPB7"; annotation "DNA-directed RNA polymerase II subunit RPB7"; Pfam "[S1] S1 RNA binding domain|[SHS2_Rpb7-N] SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397|[RNA_pol_Rbc25] RNA polymerase III subunit Rpc25"; CDD "RNA polymerase II subunit 7; Provisional"; KO "K03015"; similar_genes "RPB7_HUMAN(e-value:1.7e-78;bit-score:290.0)"; Scaffold008 rebuild exon 836040 836558 . - . gene_id "RvY_12981"; transcript_id "RvY_12981.1"; Scaffold008 rebuild transcript 837555 839325 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; gene_name "KAR"; annotation "putative Estradiol 17-beta-dehydrogenase 12"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.1.-|EC1.1.1.62"; KO "K10251"; similar_genes "DHB12_ANAPL(e-value:1.8e-27;bit-score:120.0)"; Scaffold008 rebuild exon 837555 837735 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 837799 837845 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 837911 837986 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 838091 838201 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 838263 838299 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 838364 838436 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 838569 838751 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 838962 839111 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild exon 839203 839325 . + . gene_id "RvY_12982"; transcript_id "RvY_12982.1"; Scaffold008 rebuild transcript 839530 840105 . - . gene_id "RvY_12983"; transcript_id "RvY_12983.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 839530 840105 . - . gene_id "RvY_12983"; transcript_id "RvY_12983.1"; Scaffold008 rebuild transcript 840448 841325 . - . gene_id "RvY_12984"; transcript_id "RvY_12984.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 840448 840620 . - . gene_id "RvY_12984"; transcript_id "RvY_12984.1"; Scaffold008 rebuild exon 840833 841230 . - . gene_id "RvY_12984"; transcript_id "RvY_12984.1"; Scaffold008 rebuild exon 841294 841325 . - . gene_id "RvY_12984"; transcript_id "RvY_12984.1"; Scaffold008 rebuild transcript 842444 842761 . - . gene_id "RvY_12985"; transcript_id "RvY_12985.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 842444 842761 . - . gene_id "RvY_12985"; transcript_id "RvY_12985.1"; Scaffold008 rebuild transcript 843164 845564 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; gene_name "CHRNN"; annotation "putative Ligand-gated ion channel 4"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; KO "K05312"; similar_genes "LGC4_CAEBR(e-value:4.5e-26;bit-score:116.0)"; Scaffold008 rebuild exon 843164 843771 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 843855 843933 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 844135 844298 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 844378 844528 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 844606 844699 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 844822 844881 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 844942 845096 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 845193 845281 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 845365 845439 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild exon 845507 845564 . - . gene_id "RvY_12986"; transcript_id "RvY_12986.1"; Scaffold008 rebuild transcript 846946 848437 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; gene_name "LIC"; annotation "putative Neuronal acetylcholine receptor subunit alpha-10"; Pfam "[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region"; CDD "Cation transporter family protein. selective while glycine receptors are anion selective)."; similar_genes "ACH10_CHICK(e-value:8.9e-27;bit-score:118.0)"; Scaffold008 rebuild exon 846946 847530 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild exon 847739 847791 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild exon 847854 847899 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild exon 847997 848047 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild exon 848119 848264 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild exon 848335 848369 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild exon 848436 848437 . - . gene_id "RvY_12987"; transcript_id "RvY_12987.1"; Scaffold008 rebuild transcript 849373 851915 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; annotation "putative Acetylcholine receptor subunit alpha"; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "ACHA_MOUSE(e-value:3.4e-26;bit-score:116.0)"; Scaffold008 rebuild exon 849373 849395 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; Scaffold008 rebuild exon 849493 849599 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; Scaffold008 rebuild exon 849679 849707 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; Scaffold008 rebuild exon 850667 850755 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; Scaffold008 rebuild exon 850946 851002 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; Scaffold008 rebuild exon 851849 851915 . - . gene_id "RvY_12988"; transcript_id "RvY_12988.1"; Scaffold008 rebuild transcript 853195 853619 . - . gene_id "RvY_12989"; transcript_id "RvY_12989.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 853195 853444 . - . gene_id "RvY_12989"; transcript_id "RvY_12989.1"; Scaffold008 rebuild exon 853567 853619 . - . gene_id "RvY_12989"; transcript_id "RvY_12989.1"; Scaffold008 rebuild transcript 853195 853532 . - . gene_id "RvY_12989"; transcript_id "RvY_12989.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 853195 853444 . - . gene_id "RvY_12989"; transcript_id "RvY_12989.2"; Scaffold008 rebuild exon 853528 853532 . - . gene_id "RvY_12989"; transcript_id "RvY_12989.2"; Scaffold008 rebuild transcript 854232 854588 . + . gene_id "RvY_12990"; transcript_id "RvY_12990.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 854232 854588 . + . gene_id "RvY_12990"; transcript_id "RvY_12990.1"; Scaffold008 rebuild transcript 855086 861782 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR7_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold008 rebuild exon 855086 855571 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 855643 855913 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 856182 856743 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 856801 857108 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 857226 857787 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 858021 858410 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 858644 858997 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 859052 859208 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 859641 859910 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 859984 860080 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 860239 860268 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 860540 860685 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 860766 860959 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 861022 861190 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 861291 861369 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 861430 861530 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild exon 861618 861782 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.1"; Scaffold008 rebuild transcript 855086 861782 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WDR7_HUMAN(e-value:1.8e-12;bit-score:70.0)"; Scaffold008 rebuild exon 855086 855571 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 855643 855913 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 856182 856743 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 856801 857108 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 857226 857787 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 858021 858410 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 858644 858997 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 859052 859208 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 859641 859910 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 859984 860080 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 860540 860685 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 860766 860959 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 861022 861190 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 861291 861369 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 861430 861530 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild exon 861618 861782 . - . gene_id "RvY_12991"; transcript_id "RvY_12991.2"; Scaffold008 rebuild transcript 862503 863623 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; gene_name "RAC1"; annotation "Ras-related C3 botulinum toxin substrate 1"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; KO "K04392"; similar_genes "RAC1_BOVIN(e-value:1.6e-98;bit-score:356.0)"; Scaffold008 rebuild exon 862503 862541 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; Scaffold008 rebuild exon 862612 862732 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; Scaffold008 rebuild exon 862914 863004 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; Scaffold008 rebuild exon 863092 863176 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; Scaffold008 rebuild exon 863286 863472 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; Scaffold008 rebuild exon 863568 863623 . + . gene_id "RvY_12992"; transcript_id "RvY_12992.1"; Scaffold008 rebuild transcript 864427 867509 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; gene_name "htpG"; annotation "Heat shock cognate protein HSP 90-beta"; Pfam "[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[HSP90] Hsp90 protein|[HATPase_c_3] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase"; CDD "heat shock protein 83 kDa (Hsp83); Provisional"; KO "K04079"; similar_genes "HS90B_CHICK(e-value:1.8e-222;bit-score:768.0)"; Scaffold008 rebuild exon 864427 864912 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; Scaffold008 rebuild exon 865182 865741 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; Scaffold008 rebuild exon 865878 866324 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; Scaffold008 rebuild exon 866620 867009 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; Scaffold008 rebuild exon 867115 867352 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; Scaffold008 rebuild exon 867444 867509 . - . gene_id "RvY_12993"; transcript_id "RvY_12993.1"; Scaffold008 rebuild transcript 868512 871046 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; gene_name "HSPA1_8"; annotation "Heat shock 70 kDa protein cognate 4"; Pfam "[HSP70] Hsp70 protein|[MreB_Mbl] MreB/Mbl protein"; CDD "heat shock 70 kDa protein; Provisional"; KO "K03283"; similar_genes "HSP7D_MANSE(e-value:0.0e+00;bit-score:1093.0)"; Scaffold008 rebuild exon 868512 868679 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; Scaffold008 rebuild exon 868765 869160 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; Scaffold008 rebuild exon 869287 869775 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; Scaffold008 rebuild exon 869952 870257 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; Scaffold008 rebuild exon 870337 870732 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; Scaffold008 rebuild exon 870849 871046 . + . gene_id "RvY_12994"; transcript_id "RvY_12994.1"; Scaffold008 rebuild transcript 871450 872037 . - . gene_id "RvY_12995"; transcript_id "RvY_12995.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 871450 872037 . - . gene_id "RvY_12995"; transcript_id "RvY_12995.1"; Scaffold008 rebuild transcript 873007 873765 . - . gene_id "RvY_12996"; transcript_id "RvY_12996.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 873007 873210 . - . gene_id "RvY_12996"; transcript_id "RvY_12996.1"; Scaffold008 rebuild exon 873286 873584 . - . gene_id "RvY_12996"; transcript_id "RvY_12996.1"; Scaffold008 rebuild exon 873702 873765 . - . gene_id "RvY_12996"; transcript_id "RvY_12996.1"; Scaffold008 rebuild transcript 875097 875622 . - . gene_id "RvY_12997"; transcript_id "RvY_12997.1"; annotation "hypothetical protein."; Pfam "[DDDD] Putative mitochondrial precursor protein"; Scaffold008 rebuild exon 875097 875320 . - . gene_id "RvY_12997"; transcript_id "RvY_12997.1"; Scaffold008 rebuild exon 875388 875622 . - . gene_id "RvY_12997"; transcript_id "RvY_12997.1"; Scaffold008 rebuild transcript 876046 878060 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 876046 876458 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.1"; Scaffold008 rebuild exon 876535 876837 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.1"; Scaffold008 rebuild exon 876899 877706 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.1"; Scaffold008 rebuild exon 877851 878060 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.1"; Scaffold008 rebuild transcript 876046 878391 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 876046 876458 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.2"; Scaffold008 rebuild exon 876535 876837 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.2"; Scaffold008 rebuild exon 876899 877706 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.2"; Scaffold008 rebuild exon 878365 878391 . - . gene_id "RvY_12998"; transcript_id "RvY_12998.2"; Scaffold008 rebuild transcript 877122 877514 . + . gene_id "RvY_12999"; transcript_id "RvY_12999.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 877122 877514 . + . gene_id "RvY_12999"; transcript_id "RvY_12999.1"; Scaffold008 rebuild transcript 877564 877749 . + . gene_id "RvY_13000"; transcript_id "RvY_13000.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 877564 877749 . + . gene_id "RvY_13000"; transcript_id "RvY_13000.1"; Scaffold008 rebuild transcript 878992 879342 . - . gene_id "RvY_13001"; transcript_id "RvY_13001.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 878992 879342 . - . gene_id "RvY_13001"; transcript_id "RvY_13001.1"; Scaffold008 rebuild transcript 879690 880712 . - . gene_id "RvY_13002"; transcript_id "RvY_13002.1"; annotation "putative Mediator of RNA polymerase II transcription subunit 6"; Pfam "[Med6] MED6 mediator sub complex component"; KO "K15128"; similar_genes "MED6_BOVIN(e-value:1.4e-33;bit-score:141.0)"; Scaffold008 rebuild exon 879690 880087 . - . gene_id "RvY_13002"; transcript_id "RvY_13002.1"; Scaffold008 rebuild exon 880193 880284 . - . gene_id "RvY_13002"; transcript_id "RvY_13002.1"; Scaffold008 rebuild exon 880424 880580 . - . gene_id "RvY_13002"; transcript_id "RvY_13002.1"; Scaffold008 rebuild exon 880658 880712 . - . gene_id "RvY_13002"; transcript_id "RvY_13002.1"; Scaffold008 rebuild transcript 881293 883784 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; gene_name "RluA"; annotation "hypothetical protein."; Pfam "[PseudoU_synth_2] RNA pseudouridylate synthase"; CDD "Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]"; similar_genes "RUSD4_DANRE(e-value:1.4e-14;bit-score:78.0)"; Scaffold008 rebuild exon 881293 881416 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 881544 882110 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 882191 882475 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 882549 882598 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 882673 882820 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 882929 882989 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 883248 883284 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 883395 883442 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild exon 883635 883784 . + . gene_id "RvY_13003"; transcript_id "RvY_13003.1"; Scaffold008 rebuild transcript 885919 886749 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.1"; gene_name "(1,2)SSF(3)sss"; annotation "(1,2)putative Sodium/glucose cotransporter 1(3)putative Sodium/glucose cotransporter 2"; Pfam "[SSF] Sodium:solute symporter family"; CDD "(1,2)Sodium:solute symporter family.(3)SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; similar_genes "(1,2)SC5A1_RABIT(e-value:1.8e-27;bit-score:120.0)(3)SC5A2_MOUSE(e-value:1.2e-34;bit-score:144.0)"; Scaffold008 rebuild exon 885919 885969 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.1"; Scaffold008 rebuild exon 886068 886291 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.1"; Scaffold008 rebuild exon 886364 886469 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.1"; Scaffold008 rebuild exon 886549 886749 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.1"; Scaffold008 rebuild transcript 886038 886749 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.2"; gene_name "(1,2)SSF(3)sss"; annotation "(1,2)putative Sodium/glucose cotransporter 1(3)putative Sodium/glucose cotransporter 2"; Pfam "[SSF] Sodium:solute symporter family"; CDD "(1,2)Sodium:solute symporter family.(3)SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; similar_genes "(1,2)SC5A1_RABIT(e-value:1.8e-27;bit-score:120.0)(3)SC5A2_MOUSE(e-value:1.2e-34;bit-score:144.0)"; Scaffold008 rebuild exon 886038 886291 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.2"; Scaffold008 rebuild exon 886364 886469 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.2"; Scaffold008 rebuild exon 886549 886749 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.2"; Scaffold008 rebuild transcript 885411 885927 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.3"; gene_name "(1,2)SSF(3)sss"; annotation "(1,2)putative Sodium/glucose cotransporter 1(3)putative Sodium/glucose cotransporter 2"; Pfam "[SSF] Sodium:solute symporter family"; CDD "(1,2)Sodium:solute symporter family.(3)SSS sodium solute transporter superfamily. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli."; similar_genes "(1,2)SC5A1_RABIT(e-value:1.8e-27;bit-score:120.0)(3)SC5A2_MOUSE(e-value:1.2e-34;bit-score:144.0)"; Scaffold008 rebuild exon 885411 885467 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.3"; Scaffold008 rebuild exon 885528 885647 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.3"; Scaffold008 rebuild exon 885750 885867 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.3"; Scaffold008 rebuild exon 885923 885927 . - . gene_id "RvY_13004"; transcript_id "RvY_13004.3"; Scaffold008 rebuild transcript 885541 886153 . + . gene_id "RvY_13005"; transcript_id "RvY_13005.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 885541 885676 . + . gene_id "RvY_13005"; transcript_id "RvY_13005.1"; Scaffold008 rebuild exon 885771 886153 . + . gene_id "RvY_13005"; transcript_id "RvY_13005.1"; Scaffold008 rebuild transcript 889415 892966 . - . gene_id "RvY_13006"; transcript_id "RvY_13006.1"; annotation "hypothetical protein."; Pfam "[DUF563]"; EC "EC2.4.-.-"; similar_genes "AGO61_DANRE(e-value:3.8e-21;bit-score:99.0)"; Scaffold008 rebuild exon 889415 890010 . - . gene_id "RvY_13006"; transcript_id "RvY_13006.1"; Scaffold008 rebuild exon 891066 891573 . - . gene_id "RvY_13006"; transcript_id "RvY_13006.1"; Scaffold008 rebuild exon 892079 892849 . - . gene_id "RvY_13006"; transcript_id "RvY_13006.1"; Scaffold008 rebuild exon 892904 892966 . - . gene_id "RvY_13006"; transcript_id "RvY_13006.1"; Scaffold008 rebuild transcript 895397 896804 . + . gene_id "RvY_13007"; transcript_id "RvY_13007.1"; annotation "hypothetical protein."; Pfam "[Nse4]"; Scaffold008 rebuild exon 895397 895703 . + . gene_id "RvY_13007"; transcript_id "RvY_13007.1"; Scaffold008 rebuild exon 895990 896804 . + . gene_id "RvY_13007"; transcript_id "RvY_13007.1"; Scaffold008 rebuild transcript 897067 897393 . + . gene_id "RvY_13008"; transcript_id "RvY_13008.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 897067 897393 . + . gene_id "RvY_13008"; transcript_id "RvY_13008.1"; Scaffold008 rebuild transcript 897523 898869 . - . gene_id "RvY_13009"; transcript_id "RvY_13009.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 897523 898869 . - . gene_id "RvY_13009"; transcript_id "RvY_13009.1"; Scaffold008 rebuild transcript 900628 902355 . + . gene_id "RvY_13010"; transcript_id "RvY_13010.1"; annotation "hypothetical protein."; Pfam "[Glyco_trans_2_3] Glycosyl transferase family group 2"; EC "EC2.4.1.-"; similar_genes "BRE3_CAEBR(e-value:7.6e-24;bit-score:108.0)"; Scaffold008 rebuild exon 900628 900767 . + . gene_id "RvY_13010"; transcript_id "RvY_13010.1"; Scaffold008 rebuild exon 901007 901513 . + . gene_id "RvY_13010"; transcript_id "RvY_13010.1"; Scaffold008 rebuild exon 901593 902355 . + . gene_id "RvY_13010"; transcript_id "RvY_13010.1"; Scaffold008 rebuild transcript 903745 905377 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; product "CAHS12"; annotation "CAHS12 | hypothetical protein."; Scaffold008 rebuild exon 903745 903829 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 903902 904072 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 904162 904226 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 904301 904477 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 904596 904676 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 904762 904959 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 905107 905181 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 905257 905280 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild exon 905360 905377 . - . gene_id "RvY_13011"; transcript_id "RvY_13011.1"; Scaffold008 rebuild transcript 906204 915126 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; annotation "Pecanex-like protein 3"; Pfam "[Pecanex_C] Pecanex protein (C-terminus)"; similar_genes "PCX3_MOUSE(e-value:1.2e-119;bit-score:427.0)"; Scaffold008 rebuild exon 906204 906356 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 906616 906884 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 906945 907198 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 907314 907451 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 907533 907613 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 907826 908395 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 908505 908673 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 908775 908839 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 908913 908969 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 909039 909230 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 909310 909391 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 909470 910335 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 910727 911163 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 911394 911611 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 911695 912104 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 912170 912211 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 912284 912336 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 912445 912580 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 912649 912924 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 912995 913188 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 913283 913510 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 913586 913689 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 913945 914244 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 914320 914503 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 914642 914811 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 914872 914963 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild exon 915077 915126 . + . gene_id "RvY_13012"; transcript_id "RvY_13012.1"; Scaffold008 rebuild transcript 915425 915986 . - . gene_id "RvY_13013"; transcript_id "RvY_13013.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 915425 915552 . - . gene_id "RvY_13013"; transcript_id "RvY_13013.1"; Scaffold008 rebuild exon 915764 915986 . - . gene_id "RvY_13013"; transcript_id "RvY_13013.1"; Scaffold008 rebuild transcript 916104 917672 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; gene_name "K01482"; annotation "dimethylargininase [EC:3.5.3.18]"; Pfam "[Amidinotransf] Amidinotransferase"; EC "EC3.5.3.18"; KO "K01482"; similar_genes "DDAH1_RAT(e-value:6.7e-08;bit-score:55.0)"; Scaffold008 rebuild exon 916104 916208 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 916272 916530 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 916589 916678 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 916749 916858 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 916934 916991 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 917242 917303 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 917427 917473 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild exon 917576 917672 . + . gene_id "RvY_13014"; transcript_id "RvY_13014.1"; Scaffold008 rebuild transcript 918296 922112 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; annotation "putative GRAM domain-containing protein 1A"; Pfam "[GRAM]"; similar_genes "GRM1A_RAT(e-value:1.5e-26;bit-score:117.0)"; Scaffold008 rebuild exon 918296 918367 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 918455 918698 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 918758 918860 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 918932 919111 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 919212 919467 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 919591 919728 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 919801 920289 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 920497 920676 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 920741 920844 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 920923 921007 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 921073 921846 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild exon 921960 922112 . - . gene_id "RvY_13015"; transcript_id "RvY_13015.1"; Scaffold008 rebuild transcript 923522 924792 . + . gene_id "RvY_13016"; transcript_id "RvY_13016.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 923522 923988 . + . gene_id "RvY_13016"; transcript_id "RvY_13016.1"; Scaffold008 rebuild exon 924783 924792 . + . gene_id "RvY_13016"; transcript_id "RvY_13016.1"; Scaffold008 rebuild transcript 923522 923992 . + . gene_id "RvY_13016"; transcript_id "RvY_13016.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 923522 923992 . + . gene_id "RvY_13016"; transcript_id "RvY_13016.2"; Scaffold008 rebuild transcript 925016 928099 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold008 rebuild exon 925016 925429 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 925504 925735 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 925795 926111 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 926187 926723 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 926807 926986 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 927047 927172 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 927256 927486 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 927566 927748 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild exon 927836 928099 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.1"; Scaffold008 rebuild transcript 925016 927891 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold008 rebuild exon 925016 925429 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 925504 925735 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 925795 926111 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 926187 926723 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 926807 926986 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 927047 927172 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 927256 927486 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 927566 927748 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild exon 927865 927891 . + . gene_id "RvY_13017"; transcript_id "RvY_13017.2"; Scaffold008 rebuild transcript 931736 935974 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 931736 932177 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; Scaffold008 rebuild exon 932246 932594 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; Scaffold008 rebuild exon 932718 934038 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; Scaffold008 rebuild exon 934342 934950 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; Scaffold008 rebuild exon 935024 935213 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; Scaffold008 rebuild exon 935289 935974 . + . gene_id "RvY_13018"; transcript_id "RvY_13018.1"; Scaffold008 rebuild transcript 936092 936316 . - . gene_id "RvY_13019"; transcript_id "RvY_13019.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 936092 936316 . - . gene_id "RvY_13019"; transcript_id "RvY_13019.1"; Scaffold008 rebuild transcript 936880 940919 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; gene_name "COG4886"; annotation "hypothetical protein."; Pfam "[LRR_8] Leucine rich repeat|[LRR_4] Leucine Rich repeats (2 copies)"; CDD "Leucine-rich repeat (LRR) protein [Function unknown]"; Scaffold008 rebuild exon 936880 937442 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 937666 938312 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 938394 939089 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 939239 939762 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 939835 939932 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 940124 940299 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 940385 940665 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild exon 940731 940919 . + . gene_id "RvY_13020"; transcript_id "RvY_13020.1"; Scaffold008 rebuild transcript 941497 946544 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold008 rebuild exon 941497 941754 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 941821 942039 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 942099 942440 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 942618 942850 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 942917 943002 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 943089 943159 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 943230 943328 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 943437 943496 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 943576 943827 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 943900 943961 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 944031 944083 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 944145 944229 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 944318 944564 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 944766 944963 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 945029 945077 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 945191 945767 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 945844 946000 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild exon 946287 946544 . - . gene_id "RvY_13021"; transcript_id "RvY_13021.1"; Scaffold008 rebuild transcript 949551 949772 . - . gene_id "RvY_13022"; transcript_id "RvY_13022.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 949551 949772 . - . gene_id "RvY_13022"; transcript_id "RvY_13022.1"; Scaffold008 rebuild transcript 951451 953827 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; gene_name "K00966"; annotation "mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]"; Pfam "[NTP_transferase] Nucleotidyl transferase|[Hexapep] Bacterial transferase hexapeptide (six repeats)"; CDD "N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation."; EC "EC2.7.7.13"; KO "K00966"; similar_genes "GMPPA_XENTR(e-value:3.0e-25;bit-score:113.0)"; Scaffold008 rebuild exon 951451 951493 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 951643 951701 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 951809 951847 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 951938 952041 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 952130 952319 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 952443 952502 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 952596 952741 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 952804 952989 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 953054 953201 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 953309 953471 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 953554 953655 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild exon 953727 953827 . + . gene_id "RvY_13023"; transcript_id "RvY_13023.1"; Scaffold008 rebuild transcript 954262 955444 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 954262 954386 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 954457 954510 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 954573 954615 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 954715 954804 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 954923 954959 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 955042 955074 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 955248 955321 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild exon 955409 955444 . + . gene_id "RvY_13024"; transcript_id "RvY_13024.1"; Scaffold008 rebuild transcript 956013 956418 . + . gene_id "RvY_13025"; transcript_id "RvY_13025.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 956013 956222 . + . gene_id "RvY_13025"; transcript_id "RvY_13025.1"; Scaffold008 rebuild exon 956311 956418 . + . gene_id "RvY_13025"; transcript_id "RvY_13025.1"; Scaffold008 rebuild transcript 956523 958728 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; gene_name "Mon1"; annotation "hypothetical protein."; Pfam "[Mon1] Trafficking protein Mon1"; CDD "Trafficking protein Mon1. Members of this family have been called SAND proteins although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes. describes orthologues in Fugu rubripes."; similar_genes "MON1A_BOVIN(e-value:4.7e-15;bit-score:79.0)"; Scaffold008 rebuild exon 956523 956666 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; Scaffold008 rebuild exon 956730 957014 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; Scaffold008 rebuild exon 957076 957193 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; Scaffold008 rebuild exon 957259 957879 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; Scaffold008 rebuild exon 958052 958317 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; Scaffold008 rebuild exon 958369 958728 . - . gene_id "RvY_13026"; transcript_id "RvY_13026.1"; Scaffold008 rebuild transcript 959069 960191 . + . gene_id "RvY_13027"; transcript_id "RvY_13027.1"; annotation "hypothetical protein."; Pfam "[SNARE_assoc] SNARE associated Golgi protein"; similar_genes "TM41A_BOVIN(e-value:7.3e-18;bit-score:88.0)"; Scaffold008 rebuild exon 959069 959166 . + . gene_id "RvY_13027"; transcript_id "RvY_13027.1"; Scaffold008 rebuild exon 959231 959387 . + . gene_id "RvY_13027"; transcript_id "RvY_13027.1"; Scaffold008 rebuild exon 959455 959616 . + . gene_id "RvY_13027"; transcript_id "RvY_13027.1"; Scaffold008 rebuild exon 959688 959826 . + . gene_id "RvY_13027"; transcript_id "RvY_13027.1"; Scaffold008 rebuild exon 959935 960191 . + . gene_id "RvY_13027"; transcript_id "RvY_13027.1"; Scaffold008 rebuild transcript 960224 962931 . - . gene_id "RvY_13028"; transcript_id "RvY_13028.1"; annotation "hypothetical protein."; Pfam "[Nop14] Nop14-like family"; KO "K14766"; Scaffold008 rebuild exon 960224 960473 . - . gene_id "RvY_13028"; transcript_id "RvY_13028.1"; Scaffold008 rebuild exon 960555 961711 . - . gene_id "RvY_13028"; transcript_id "RvY_13028.1"; Scaffold008 rebuild exon 961767 962131 . - . gene_id "RvY_13028"; transcript_id "RvY_13028.1"; Scaffold008 rebuild exon 962322 962931 . - . gene_id "RvY_13028"; transcript_id "RvY_13028.1"; Scaffold008 rebuild transcript 964195 965653 . + . gene_id "RvY_13029"; transcript_id "RvY_13029.1"; gene_name "SITPEC"; annotation "putative Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial"; Pfam "[ECSIT] Evolutionarily conserved signalling intermediate in Toll pathway"; KO "K04405"; similar_genes "ECSIT_DROME(e-value:6.8e-44;bit-score:175.0)"; Scaffold008 rebuild exon 964195 964717 . + . gene_id "RvY_13029"; transcript_id "RvY_13029.1"; Scaffold008 rebuild exon 964787 965010 . + . gene_id "RvY_13029"; transcript_id "RvY_13029.1"; Scaffold008 rebuild exon 965083 965317 . + . gene_id "RvY_13029"; transcript_id "RvY_13029.1"; Scaffold008 rebuild exon 965382 965653 . + . gene_id "RvY_13029"; transcript_id "RvY_13029.1"; Scaffold008 rebuild transcript 967076 971147 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.1"; gene_name "Egl_like_exo"; annotation "hypothetical protein."; Pfam "[DNA_pol_A_exo1] 3'-5' exonuclease"; CDD "The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the Scaffold008 rebuild exon 967076 967503 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.1"; Scaffold008 rebuild exon 968236 968888 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.1"; Scaffold008 rebuild exon 969198 969589 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.1"; Scaffold008 rebuild exon 970003 970226 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.1"; Scaffold008 rebuild exon 970730 971147 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.1"; Scaffold008 rebuild transcript 967076 970230 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.2"; gene_name "Egl_like_exo"; annotation "hypothetical protein."; Pfam "[DNA_pol_A_exo1] 3'-5' exonuclease"; CDD "The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the Scaffold008 rebuild exon 967076 967503 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.2"; Scaffold008 rebuild exon 968236 968888 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.2"; Scaffold008 rebuild exon 969198 969589 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.2"; Scaffold008 rebuild exon 970003 970230 . + . gene_id "RvY_13030"; transcript_id "RvY_13030.2"; Scaffold008 rebuild transcript 971525 973562 . - . gene_id "RvY_13031"; transcript_id "RvY_13031.1"; gene_name "ALG9"; annotation "putative Alpha-1,2-mannosyltransferase ALG9"; Pfam "[Glyco_transf_22] Alg9-like mannosyltransferase family"; CDD "Alg9-like mannosyltransferase family. Members of this family are mannosyltransferase enzymes. At least some members are localized in endoplasmic reticulum and involved in GPI anchor biosynthesis."; EC "EC2.4.1.-"; KO "K03846"; similar_genes "ALG9_MOUSE(e-value:1.5e-26;bit-score:117.0)"; Scaffold008 rebuild exon 971525 972684 . - . gene_id "RvY_13031"; transcript_id "RvY_13031.1"; Scaffold008 rebuild exon 972848 973562 . - . gene_id "RvY_13031"; transcript_id "RvY_13031.1"; Scaffold008 rebuild transcript 972934 973575 . + . gene_id "RvY_13032"; transcript_id "RvY_13032.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 972934 973024 . + . gene_id "RvY_13032"; transcript_id "RvY_13032.1"; Scaffold008 rebuild exon 973418 973575 . + . gene_id "RvY_13032"; transcript_id "RvY_13032.1"; Scaffold008 rebuild transcript 973985 977704 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; gene_name "AP1G1"; annotation "AP-1 complex subunit gamma-1"; Pfam "[Adaptin_N] Adaptin N terminal region|[HEAT_2] HEAT repeats|[Alpha_adaptinC2] Adaptin C-terminal domain"; KO "K12391"; similar_genes "AP1G1_HUMAN(e-value:2.1e-174;bit-score:608.0)"; Scaffold008 rebuild exon 973985 974191 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 974252 974653 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 974716 974998 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 975057 975427 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 975679 975988 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 976185 976339 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 976428 976508 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 976592 976861 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 976947 977088 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 977177 977301 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 977374 977613 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild exon 977681 977704 . - . gene_id "RvY_13033"; transcript_id "RvY_13033.1"; Scaffold008 rebuild transcript 978371 979742 . + . gene_id "RvY_13034"; transcript_id "RvY_13034.1"; annotation "hypothetical protein."; Pfam "[DUF92] Integral membrane protein DUF92"; similar_genes "TMM19_HUMAN(e-value:6.1e-13;bit-score:72.0)"; Scaffold008 rebuild exon 978371 978614 . + . gene_id "RvY_13034"; transcript_id "RvY_13034.1"; Scaffold008 rebuild exon 978679 978921 . + . gene_id "RvY_13034"; transcript_id "RvY_13034.1"; Scaffold008 rebuild exon 978985 979239 . + . gene_id "RvY_13034"; transcript_id "RvY_13034.1"; Scaffold008 rebuild exon 979330 979742 . + . gene_id "RvY_13034"; transcript_id "RvY_13034.1"; Scaffold008 rebuild transcript 980120 982145 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[SH3_2] Variant SH3 domain|[FCH] Fes/CIP4, and EFC/F-BAR homology domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "PACN2_HUMAN(e-value:1.1e-16;bit-score:85.0)"; Scaffold008 rebuild exon 980120 980167 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild exon 980251 980471 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild exon 980612 980849 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild exon 980909 981136 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild exon 981222 981344 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild exon 981421 981829 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild exon 982009 982145 . - . gene_id "RvY_13035"; transcript_id "RvY_13035.1"; Scaffold008 rebuild transcript 983160 985618 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; annotation "hypothetical protein."; Pfam "[START]|[MENTAL] Cholesterol-capturing domain"; similar_genes "STAR3_DANRE(e-value:7.8e-09;bit-score:58.0)"; Scaffold008 rebuild exon 983160 983267 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 983415 983517 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 983582 983778 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 983851 984099 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 984193 984272 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 984335 984539 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 984648 984704 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 984792 984845 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 984969 985046 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 985214 985294 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 985422 985510 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild exon 985594 985618 . - . gene_id "RvY_13036"; transcript_id "RvY_13036.1"; Scaffold008 rebuild transcript 984399 984665 . + . gene_id "RvY_13037"; transcript_id "RvY_13037.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 984399 984665 . + . gene_id "RvY_13037"; transcript_id "RvY_13037.1"; Scaffold008 rebuild transcript 985647 986218 . - . gene_id "RvY_13038"; transcript_id "RvY_13038.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 985647 985776 . - . gene_id "RvY_13038"; transcript_id "RvY_13038.1"; Scaffold008 rebuild exon 985947 986218 . - . gene_id "RvY_13038"; transcript_id "RvY_13038.1"; Scaffold008 rebuild transcript 986357 990428 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; annotation "putative Uncharacterized protein YMR196W"; Pfam "[Glyco_hydro_63] Mannosyl oligosaccharide glucosidase"; similar_genes "YM54_YEAST(e-value:4.3e-37;bit-score:152.0)"; Scaffold008 rebuild exon 986357 986450 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 986530 986638 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 986701 986801 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 986864 986931 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 986999 987280 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 987516 987842 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 988118 988390 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 988463 988621 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 988743 988970 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 989049 989308 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 989383 989721 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 989805 989979 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 990053 990221 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild exon 990277 990428 . - . gene_id "RvY_13039"; transcript_id "RvY_13039.1"; Scaffold008 rebuild transcript 991353 993351 . + . gene_id "RvY_13040"; transcript_id "RvY_13040.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 991353 992049 . + . gene_id "RvY_13040"; transcript_id "RvY_13040.1"; Scaffold008 rebuild exon 992273 992592 . + . gene_id "RvY_13040"; transcript_id "RvY_13040.1"; Scaffold008 rebuild exon 992695 993351 . + . gene_id "RvY_13040"; transcript_id "RvY_13040.1"; Scaffold008 rebuild transcript 994346 995695 . - . gene_id "RvY_13041"; transcript_id "RvY_13041.3"; gene_name "(1,3,5)SHOX"; annotation "(1,3,5)short stature homeobox protein(2,4)hypothetical protein."; Pfam "[OAR]|[Homeobox]"; KO "(1,3,5)K09331"; similar_genes "(1,3,5)SHOX_HUMAN(e-value:8.8e-25;bit-score:111.0)(4)SHOX_HUMAN(e-value:1.5e-07;bit-score:54.0)"; Scaffold008 rebuild exon 994346 994720 . - . gene_id "RvY_13041"; transcript_id "RvY_13041.3"; Scaffold008 rebuild exon 995390 995695 . - . gene_id "RvY_13041"; transcript_id "RvY_13041.3"; Scaffold008 rebuild transcript 994346 995572 . - . gene_id "RvY_13041"; transcript_id "RvY_13041.5"; gene_name "(1,3,5)SHOX"; annotation "(1,3,5)short stature homeobox protein(2,4)hypothetical protein."; Pfam "[OAR]|[Homeobox]"; KO "(1,3,5)K09331"; similar_genes "(1,3,5)SHOX_HUMAN(e-value:8.8e-25;bit-score:111.0)(4)SHOX_HUMAN(e-value:1.5e-07;bit-score:54.0)"; Scaffold008 rebuild exon 994346 994720 . - . gene_id "RvY_13041"; transcript_id "RvY_13041.5"; Scaffold008 rebuild exon 995390 995572 . - . gene_id "RvY_13041"; transcript_id "RvY_13041.5"; Scaffold008 rebuild transcript 996543 1006307 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 996543 996779 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 996842 997042 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 999400 999540 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 999615 999920 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1000108 1000455 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1000611 1001198 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1001445 1001564 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1001648 1001858 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1001989 1002143 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1002232 1002721 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1003129 1003318 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1003384 1003489 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1003544 1003741 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1003824 1004065 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1004182 1004334 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1004423 1005046 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1005125 1005399 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild exon 1005667 1006307 . - . gene_id "RvY_13042"; transcript_id "RvY_13042.1"; Scaffold008 rebuild transcript 997548 997721 . + . gene_id "RvY_13043"; transcript_id "RvY_13043.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 997548 997721 . + . gene_id "RvY_13043"; transcript_id "RvY_13043.1"; Scaffold008 rebuild transcript 997831 998658 . + . gene_id "RvY_13044"; transcript_id "RvY_13044.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 997831 998658 . + . gene_id "RvY_13044"; transcript_id "RvY_13044.1"; Scaffold008 rebuild transcript 998993 999326 . + . gene_id "RvY_13045"; transcript_id "RvY_13045.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 998993 999221 . + . gene_id "RvY_13045"; transcript_id "RvY_13045.1"; Scaffold008 rebuild exon 999250 999326 . + . gene_id "RvY_13045"; transcript_id "RvY_13045.1"; Scaffold008 rebuild transcript 1006817 1009096 . + . gene_id "RvY_13046"; transcript_id "RvY_13046.1"; annotation "hypothetical protein."; Pfam "[PHD] PHD-finger"; Scaffold008 rebuild exon 1006817 1006956 . + . gene_id "RvY_13046"; transcript_id "RvY_13046.1"; Scaffold008 rebuild exon 1007058 1007158 . + . gene_id "RvY_13046"; transcript_id "RvY_13046.1"; Scaffold008 rebuild exon 1007341 1008438 . + . gene_id "RvY_13046"; transcript_id "RvY_13046.1"; Scaffold008 rebuild exon 1008650 1008922 . + . gene_id "RvY_13046"; transcript_id "RvY_13046.1"; Scaffold008 rebuild exon 1008996 1009096 . + . gene_id "RvY_13046"; transcript_id "RvY_13046.1"; Scaffold008 rebuild transcript 1010792 1015183 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; gene_name "ATPase-IIB_Ca"; annotation "Plasma membrane calcium-transporting ATPase 4"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(2)[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; similar_genes "AT2B4_HUMAN(e-value:1.1e-84;bit-score:310.0)"; Scaffold008 rebuild exon 1010792 1010975 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1011178 1011417 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1011479 1011604 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1011741 1012097 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1012194 1012396 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1012480 1012615 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1012717 1013074 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1013148 1013574 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1013855 1014049 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1014105 1014296 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1014372 1014582 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1014662 1014793 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1014865 1014956 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild exon 1015016 1015183 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.1"; Scaffold008 rebuild transcript 1010370 1014593 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; gene_name "ATPase-IIB_Ca"; annotation "Plasma membrane calcium-transporting ATPase 4"; Pfam "[Cation_ATPase_C] Cation transporting ATPase, C-terminus|(2)[Cation_ATPase_N] Cation transporter/ATPase, N-terminus|[E1-E2_ATPase] E1-E2 ATPase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase|[Hydrolase_like2] Putative hydrolase of sodium-potassium ATPase alpha subunit"; CDD "plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by two corresponding HMMs (TIGR01116 and TIGR01522). This model is well separated from those."; EC "EC3.6.3.8"; similar_genes "AT2B4_HUMAN(e-value:1.1e-84;bit-score:310.0)"; Scaffold008 rebuild exon 1010370 1010547 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1010727 1010975 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1011178 1011417 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1011479 1011604 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1011741 1012097 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1012194 1012396 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1012480 1012615 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1012717 1013074 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1013148 1013574 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1013855 1014049 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1014105 1014296 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild exon 1014372 1014593 . + . gene_id "RvY_13047"; transcript_id "RvY_13047.2"; Scaffold008 rebuild transcript 1015563 1018130 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; Scaffold008 rebuild exon 1015563 1015626 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1015700 1015780 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1015844 1015979 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1016058 1016289 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1016359 1016590 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1016671 1016859 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1016947 1017131 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1017349 1017445 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1017527 1017607 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1017696 1017958 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild exon 1018077 1018130 . + . gene_id "RvY_13048"; transcript_id "RvY_13048.1"; Scaffold008 rebuild transcript 1018481 1023267 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; gene_name "malZ"; annotation "putative Sucrase-isomaltase, intestinal"; Pfam "[Trefoil] Trefoil (P-type) domain|[Glyco_hydro_31] Glycosyl hydrolases family 31"; EC "EC3.2.1.20|EC3.2.1.48"; KO "K01187"; similar_genes "SUIS_HUMAN(e-value:3.9e-42;bit-score:169.0)"; Scaffold008 rebuild exon 1018481 1018779 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1018993 1019206 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1019276 1019370 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1019459 1019654 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1019736 1019852 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1020050 1020348 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1020457 1020596 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1020662 1020948 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1021012 1021118 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1021199 1021349 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1021421 1021533 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1021755 1022172 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1022404 1022719 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1023019 1023070 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild exon 1023153 1023267 . - . gene_id "RvY_13049"; transcript_id "RvY_13049.1"; Scaffold008 rebuild transcript 1023824 1024171 . - . gene_id "RvY_13050"; transcript_id "RvY_13050.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1023824 1024171 . - . gene_id "RvY_13050"; transcript_id "RvY_13050.1"; Scaffold008 rebuild transcript 1024699 1025819 . - . gene_id "RvY_13051"; transcript_id "RvY_13051.1"; gene_name "CALM"; annotation "Calmodulin"; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand_3] Cytoskeletal-regulatory complex EF hand|[efhand] EF hand|[UPF0154] Uncharacterised protein family (UPF0154)|[EF_hand_3] EF hand|[efhand_Ca_insen] Ca2+ insensitive EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "calmodulin; Provisional"; KO "K02183"; similar_genes "CALM_APLCA(e-value:1.5e-79;bit-score:293.0)"; Scaffold008 rebuild exon 1024699 1024970 . - . gene_id "RvY_13051"; transcript_id "RvY_13051.1"; Scaffold008 rebuild exon 1025642 1025819 . - . gene_id "RvY_13051"; transcript_id "RvY_13051.1"; Scaffold008 rebuild transcript 1025223 1025576 . + . gene_id "RvY_13052"; transcript_id "RvY_13052.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1025223 1025576 . + . gene_id "RvY_13052"; transcript_id "RvY_13052.1"; Scaffold008 rebuild transcript 1033732 1037820 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; annotation "hypothetical protein."; Pfam "[DC_STAMP] DC-STAMP-like protein"; Scaffold008 rebuild exon 1033732 1033735 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1033807 1034007 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1034071 1034537 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1034698 1034965 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1035037 1035174 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1035377 1035504 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1035598 1035752 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1036182 1036281 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1036422 1036644 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1036820 1037079 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1037341 1037640 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild exon 1037716 1037820 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.1"; Scaffold008 rebuild transcript 1032403 1035000 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; annotation "hypothetical protein."; Pfam "[DC_STAMP] DC-STAMP-like protein"; Scaffold008 rebuild exon 1032403 1032424 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1032704 1032903 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1033006 1033123 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1033195 1033236 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1033307 1033384 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1033440 1033523 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1033619 1033735 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1033807 1034007 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1034071 1034537 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild exon 1034698 1035000 . + . gene_id "RvY_13053"; transcript_id "RvY_13053.2"; Scaffold008 rebuild transcript 1038303 1042233 . - . gene_id "RvY_13054"; transcript_id "RvY_13054.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1038303 1038721 . - . gene_id "RvY_13054"; transcript_id "RvY_13054.1"; Scaffold008 rebuild exon 1041183 1042233 . - . gene_id "RvY_13054"; transcript_id "RvY_13054.1"; Scaffold008 rebuild transcript 1048145 1051628 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; gene_name "MAD"; annotation "hypothetical protein."; Pfam "[MAD] Mitotic checkpoint protein"; CDD "Mitotic checkpoint protein. This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated."; Scaffold008 rebuild exon 1048145 1048616 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1048991 1049223 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1049283 1049465 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1049523 1049575 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1049658 1049790 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1049857 1049987 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1050055 1050237 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1050338 1050424 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1050510 1050654 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1050737 1051217 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild exon 1051279 1051628 . + . gene_id "RvY_13055"; transcript_id "RvY_13055.1"; Scaffold008 rebuild transcript 1053227 1053502 . + . gene_id "RvY_13056"; transcript_id "RvY_13056.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1053227 1053502 . + . gene_id "RvY_13056"; transcript_id "RvY_13056.1"; Scaffold008 rebuild transcript 1053895 1054157 . - . gene_id "RvY_13057"; transcript_id "RvY_13057.1"; gene_name "UCR_6-4kD"; annotation "hypothetical protein."; Pfam "[UCR_6-4kD] Ubiquinol-cytochrome C reductase complex, 6.4kD protein"; CDD "Ubiquinol-cytochrome C reductase complex, 6.4kD protein. The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4kD protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein binding factor."; Scaffold008 rebuild exon 1053895 1054021 . - . gene_id "RvY_13057"; transcript_id "RvY_13057.1"; Scaffold008 rebuild exon 1054102 1054157 . - . gene_id "RvY_13057"; transcript_id "RvY_13057.1"; Scaffold008 rebuild transcript 1054234 1056365 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1054234 1054416 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.1"; Scaffold008 rebuild exon 1056105 1056365 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.1"; Scaffold008 rebuild transcript 1055833 1056365 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1055833 1055877 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.2"; Scaffold008 rebuild exon 1056105 1056365 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.2"; Scaffold008 rebuild transcript 1055437 1055730 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.3"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1055437 1055730 . + . gene_id "RvY_13058"; transcript_id "RvY_13058.3"; Scaffold008 rebuild transcript 1057046 1060104 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; product "Treh"; gene_name "treA"; annotation "Treh | putative Trehalase"; Pfam "[Trehalase]"; EC "EC3.2.1.28"; KO "K01194"; similar_genes "TREA_HUMAN(e-value:5.4e-31;bit-score:132.0)"; Scaffold008 rebuild exon 1057046 1057335 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1057568 1057904 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1058161 1058354 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1058413 1058723 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1058788 1058973 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1059034 1059269 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1059352 1059469 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1059615 1059721 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild exon 1059949 1060104 . + . gene_id "RvY_13059"; transcript_id "RvY_13059.1"; Scaffold008 rebuild transcript 1063820 1070077 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; product "TPS-TPP"; gene_name "otsA"; annotation "TPS-TPP | alpha,alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]"; Pfam "[Trehalose_PPase] Trehalose-phosphatase|[Hydrolase_3] haloacid dehalogenase-like hydrolase|[Glyco_transf_20] Glycosyltransferase family 20"; CDD "Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain."; EC "EC2.4.1.15"; KO "K00697"; similar_genes "TSL1_YEAST(e-value:5.7e-22;bit-score:102.0)"; Scaffold008 rebuild exon 1063820 1064014 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1064165 1064297 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1064459 1064619 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1065988 1066264 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1066347 1066477 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1066632 1066851 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1066926 1067191 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1067382 1067689 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1067876 1068121 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1068288 1068896 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1069023 1069258 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1069326 1069675 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild exon 1069808 1070077 . + . gene_id "RvY_13060"; transcript_id "RvY_13060.1"; Scaffold008 rebuild transcript 1071708 1072983 . - . gene_id "RvY_13061"; transcript_id "RvY_13061.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1071708 1072213 . - . gene_id "RvY_13061"; transcript_id "RvY_13061.1"; Scaffold008 rebuild exon 1072314 1072983 . - . gene_id "RvY_13061"; transcript_id "RvY_13061.1"; Scaffold008 rebuild transcript 1075631 1078730 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; gene_name "VRK"; annotation "vaccinia related kinase [EC:2.7.11.1]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08816"; similar_genes "VRK1_MOUSE(e-value:6.6e-23;bit-score:105.0)"; Scaffold008 rebuild exon 1075631 1075766 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1075832 1075861 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1075960 1076100 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1076194 1076252 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1076371 1076440 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1076516 1076712 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1076802 1077033 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1077106 1077223 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1077293 1077699 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1077913 1078263 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild exon 1078606 1078730 . + . gene_id "RvY_13062"; transcript_id "RvY_13062.1"; Scaffold008 rebuild transcript 1079118 1079945 . - . gene_id "RvY_13063"; transcript_id "RvY_13063.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1079118 1079945 . - . gene_id "RvY_13063"; transcript_id "RvY_13063.1"; Scaffold008 rebuild transcript 1081013 1082185 . - . gene_id "RvY_13064"; transcript_id "RvY_13064.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1081013 1081455 . - . gene_id "RvY_13064"; transcript_id "RvY_13064.1"; Scaffold008 rebuild exon 1081642 1082185 . - . gene_id "RvY_13064"; transcript_id "RvY_13064.1"; Scaffold008 rebuild transcript 1083337 1083551 . - . gene_id "RvY_13065"; transcript_id "RvY_13065.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1083337 1083443 . - . gene_id "RvY_13065"; transcript_id "RvY_13065.1"; Scaffold008 rebuild exon 1083512 1083551 . - . gene_id "RvY_13065"; transcript_id "RvY_13065.1"; Scaffold008 rebuild transcript 1084047 1084957 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.1"; gene_name "AP1S1_2"; annotation "AP-1 complex subunit sigma-2"; Pfam "[Clat_adaptor_s] Clathrin adaptor complex small chain"; CDD "Clathrin adaptor complex small chain."; KO "K12394"; similar_genes "(1)AP1S2_BOVIN(e-value:1.4e-65;bit-score:247.0)(2)AP1S2_HUMAN(e-value:1.8e-65;bit-score:247.0)"; Scaffold008 rebuild exon 1084047 1084049 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.1"; Scaffold008 rebuild exon 1084156 1084334 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.1"; Scaffold008 rebuild exon 1084399 1084645 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.1"; Scaffold008 rebuild exon 1084913 1084957 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.1"; Scaffold008 rebuild transcript 1084047 1085362 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.2"; gene_name "AP1S1_2"; annotation "AP-1 complex subunit sigma-2"; Pfam "[Clat_adaptor_s] Clathrin adaptor complex small chain"; CDD "Clathrin adaptor complex small chain."; KO "K12394"; similar_genes "(1)AP1S2_BOVIN(e-value:1.4e-65;bit-score:247.0)(2)AP1S2_HUMAN(e-value:1.8e-65;bit-score:247.0)"; Scaffold008 rebuild exon 1084047 1084049 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.2"; Scaffold008 rebuild exon 1084156 1084334 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.2"; Scaffold008 rebuild exon 1084399 1084645 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.2"; Scaffold008 rebuild exon 1085318 1085362 . + . gene_id "RvY_13066"; transcript_id "RvY_13066.2"; Scaffold008 rebuild transcript 1085779 1087956 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; gene_name "FUCA"; annotation "Tissue alpha-L-fucosidase"; Pfam "[Alpha_L_fucos] Alpha-L-fucosidase"; CDD "Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis."; EC "EC3.2.1.51"; KO "K01206"; similar_genes "FUCO_HUMAN(e-value:6.3e-51;bit-score:198.0)"; Scaffold008 rebuild exon 1085779 1086124 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1086220 1086390 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1086501 1086633 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1086739 1086836 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1086918 1087112 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1087193 1087266 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1087325 1087427 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1087503 1087661 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild exon 1087736 1087956 . - . gene_id "RvY_13067"; transcript_id "RvY_13067.1"; Scaffold008 rebuild transcript 1088702 1095294 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; gene_name "VPS36"; annotation "ESCRT-II complex subunit VPS36"; Pfam "[Vps36_ESCRT-II] Vacuolar protein sorting protein 36 Vps36|[EAP30] EAP30/Vps36 family"; KO "K12190"; similar_genes "VPS36_BOVIN(e-value:1.1e-16;bit-score:85.0)"; Scaffold008 rebuild exon 1088702 1088809 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1093451 1093522 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1093686 1093756 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1093877 1093985 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1094075 1094152 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1094270 1094602 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1094659 1094724 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1094808 1094957 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1095058 1095131 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild exon 1095201 1095294 . + . gene_id "RvY_13068"; transcript_id "RvY_13068.1"; Scaffold008 rebuild transcript 1089222 1093026 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; gene_name "COG1444"; annotation "N-acetyltransferase 10"; Pfam "[Acetyltransf_7] Acetyltransferase (GNAT) domain|[tRNA_bind_2] Possible tRNA binding domain|[DUF1726]|[Helicase_RecD] Helicase|[GNAT_acetyltr_2] GNAT acetyltransferase 2"; CDD "Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]"; EC "EC2.3.1.-"; KO "K14521"; similar_genes "NAT10_HUMAN(e-value:1.6e-83;bit-score:307.0)"; Scaffold008 rebuild exon 1089222 1089919 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild exon 1090041 1090350 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild exon 1090420 1090743 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild exon 1090802 1091043 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild exon 1091115 1091544 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild exon 1091754 1092205 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild exon 1092429 1093026 . - . gene_id "RvY_13069"; transcript_id "RvY_13069.1"; Scaffold008 rebuild transcript 1095554 1096267 . + . gene_id "RvY_13070"; transcript_id "RvY_13070.1"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; EC "EC1.15.1.1"; similar_genes "SODC_HALRO(e-value:4.0e-10;bit-score:63.0)"; Scaffold008 rebuild exon 1095554 1095791 . + . gene_id "RvY_13070"; transcript_id "RvY_13070.1"; Scaffold008 rebuild exon 1095850 1096005 . + . gene_id "RvY_13070"; transcript_id "RvY_13070.1"; Scaffold008 rebuild exon 1096077 1096267 . + . gene_id "RvY_13070"; transcript_id "RvY_13070.1"; Scaffold008 rebuild transcript 1096577 1097708 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; gene_name "PSMB3"; annotation "putative Proteasome subunit beta type-3"; Pfam "[Proteasome] Proteasome subunit"; CDD "proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02735"; similar_genes "PSB3_BOVIN(e-value:8.3e-36;bit-score:148.0)"; Scaffold008 rebuild exon 1096577 1096625 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; Scaffold008 rebuild exon 1096740 1096834 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; Scaffold008 rebuild exon 1096928 1097105 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; Scaffold008 rebuild exon 1097266 1097373 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; Scaffold008 rebuild exon 1097439 1097623 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; Scaffold008 rebuild exon 1097706 1097708 . - . gene_id "RvY_13071"; transcript_id "RvY_13071.1"; Scaffold008 rebuild transcript 1098228 1099359 . + . gene_id "RvY_13072"; transcript_id "RvY_13072.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1098228 1098384 . + . gene_id "RvY_13072"; transcript_id "RvY_13072.1"; Scaffold008 rebuild exon 1099103 1099359 . + . gene_id "RvY_13072"; transcript_id "RvY_13072.1"; Scaffold008 rebuild transcript 1100290 1101937 . - . gene_id "RvY_13073"; transcript_id "RvY_13073.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold008 rebuild exon 1100290 1100946 . - . gene_id "RvY_13073"; transcript_id "RvY_13073.1"; Scaffold008 rebuild exon 1101105 1101594 . - . gene_id "RvY_13073"; transcript_id "RvY_13073.1"; Scaffold008 rebuild exon 1101651 1101937 . - . gene_id "RvY_13073"; transcript_id "RvY_13073.1"; Scaffold008 rebuild transcript 1103104 1103436 . - . gene_id "RvY_13074"; transcript_id "RvY_13074.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1103104 1103436 . - . gene_id "RvY_13074"; transcript_id "RvY_13074.1"; Scaffold008 rebuild transcript 1103620 1106153 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; gene_name "CDK8_11"; annotation "Cell division protein kinase 8"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator."; EC "EC2.7.11.22"; KO "K02208"; similar_genes "CDK8_HUMAN(e-value:3.0e-182;bit-score:634.0)"; Scaffold008 rebuild exon 1103620 1103733 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1103917 1104030 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1104111 1104189 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1104246 1104343 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1104413 1104485 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1104571 1104660 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1104737 1104860 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1104947 1105078 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1105161 1105218 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1105301 1105441 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1105548 1105658 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1105728 1105803 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1105926 1105974 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild exon 1106033 1106153 . - . gene_id "RvY_13075"; transcript_id "RvY_13075.1"; Scaffold008 rebuild transcript 1106537 1108812 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; gene_name "WD40"; annotation "Notchless protein homolog 1"; Pfam "[WD40] WD domain, G-beta repeat|[NLE] NLE (NUC135) domain"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14855"; similar_genes "NLE1_MOUSE(e-value:1.2e-102;bit-score:370.0)"; Scaffold008 rebuild exon 1106537 1106686 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1106748 1106965 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1107061 1107140 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1107245 1107321 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1107391 1107681 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1107745 1107880 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1107956 1108002 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1108067 1108272 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1108489 1108719 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild exon 1108800 1108812 . + . gene_id "RvY_13076"; transcript_id "RvY_13076.1"; Scaffold008 rebuild transcript 1108977 1112966 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; gene_name "kgd"; annotation "(1)Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial(2)putative Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial"; Pfam "(1)[Transket_pyr] Transketolase, pyrimidine binding domain|[E1_dh] Dehydrogenase E1 component"; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; EC "EC1.2.4.2"; KO "(1)K15791"; similar_genes "(1)DHTK1_DANRE(e-value:3.5e-79;bit-score:292.0)(2)DHTK1_RAT(e-value:2.1e-30;bit-score:130.0)"; Scaffold008 rebuild exon 1108977 1109078 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1109163 1109312 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1109387 1109662 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1109748 1109875 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1109975 1110019 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1110085 1110192 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1110292 1110480 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1110543 1110795 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1110849 1110950 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1111019 1111119 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1111214 1111304 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1111364 1111549 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1111626 1111840 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1111901 1112062 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1112123 1112502 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1112578 1112710 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild exon 1112825 1112966 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.1"; Scaffold008 rebuild transcript 1110816 1112966 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; gene_name "kgd"; annotation "(1)Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial(2)putative Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial"; Pfam "(1)[Transket_pyr] Transketolase, pyrimidine binding domain|[E1_dh] Dehydrogenase E1 component"; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; EC "EC1.2.4.2"; KO "(1)K15791"; similar_genes "(1)DHTK1_DANRE(e-value:3.5e-79;bit-score:292.0)(2)DHTK1_RAT(e-value:2.1e-30;bit-score:130.0)"; Scaffold008 rebuild exon 1110816 1110950 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1111019 1111119 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1111214 1111304 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1111364 1111549 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1111626 1111840 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1111901 1112062 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1112123 1112502 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1112578 1112710 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild exon 1112825 1112966 . - . gene_id "RvY_13077"; transcript_id "RvY_13077.2"; Scaffold008 rebuild transcript 1113367 1115099 . + . gene_id "RvY_13078"; transcript_id "RvY_13078.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1113367 1113448 . + . gene_id "RvY_13078"; transcript_id "RvY_13078.1"; Scaffold008 rebuild exon 1113552 1114385 . + . gene_id "RvY_13078"; transcript_id "RvY_13078.1"; Scaffold008 rebuild exon 1114483 1115099 . + . gene_id "RvY_13078"; transcript_id "RvY_13078.1"; Scaffold008 rebuild transcript 1116714 1117223 . - . gene_id "RvY_13079"; transcript_id "RvY_13079.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1116714 1116761 . - . gene_id "RvY_13079"; transcript_id "RvY_13079.1"; Scaffold008 rebuild exon 1116906 1117223 . - . gene_id "RvY_13079"; transcript_id "RvY_13079.1"; Scaffold008 rebuild transcript 1117860 1121012 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "ZNF76_RAT(e-value:5.1e-08;bit-score:56.0)"; Scaffold008 rebuild exon 1117860 1118069 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1118174 1118429 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1118529 1118612 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1120076 1120184 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1120277 1120401 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1120473 1120607 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1120691 1120749 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild exon 1120836 1121012 . + . gene_id "RvY_13080"; transcript_id "RvY_13080.1"; Scaffold008 rebuild transcript 1125062 1126652 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.1"; gene_name "(3,4,5)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[Pkinase] Protein kinase domain|(1,2)[Pkinase_Tyr] Protein tyrosine kinase|(3,4,5)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3,4,5)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,2)ANPRB_BOVIN(e-value:1.4e-10;bit-score:64.0)(4)GCY1_CAEEL(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1125062 1125281 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.1"; Scaffold008 rebuild exon 1125524 1125837 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.1"; Scaffold008 rebuild exon 1125925 1126107 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.1"; Scaffold008 rebuild exon 1126195 1126347 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.1"; Scaffold008 rebuild exon 1126524 1126652 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.1"; Scaffold008 rebuild transcript 1125520 1126652 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.2"; gene_name "(3,4,5)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[Pkinase] Protein kinase domain|(1,2)[Pkinase_Tyr] Protein tyrosine kinase|(3,4,5)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3,4,5)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,2)ANPRB_BOVIN(e-value:1.4e-10;bit-score:64.0)(4)GCY1_CAEEL(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1125520 1125837 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.2"; Scaffold008 rebuild exon 1125925 1126107 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.2"; Scaffold008 rebuild exon 1126195 1126347 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.2"; Scaffold008 rebuild exon 1126524 1126652 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.2"; Scaffold008 rebuild transcript 1124538 1125171 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.3"; gene_name "(3,4,5)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[Pkinase] Protein kinase domain|(1,2)[Pkinase_Tyr] Protein tyrosine kinase|(3,4,5)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3,4,5)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,2)ANPRB_BOVIN(e-value:1.4e-10;bit-score:64.0)(4)GCY1_CAEEL(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1124538 1124826 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.3"; Scaffold008 rebuild exon 1124885 1125171 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.3"; Scaffold008 rebuild transcript 1124449 1125171 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.4"; gene_name "(3,4,5)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[Pkinase] Protein kinase domain|(1,2)[Pkinase_Tyr] Protein tyrosine kinase|(3,4,5)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3,4,5)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,2)ANPRB_BOVIN(e-value:1.4e-10;bit-score:64.0)(4)GCY1_CAEEL(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1124449 1124502 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.4"; Scaffold008 rebuild exon 1124604 1124826 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.4"; Scaffold008 rebuild exon 1124885 1125171 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.4"; Scaffold008 rebuild transcript 1124471 1125171 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.5"; gene_name "(3,4,5)CYCc"; annotation "hypothetical protein."; Pfam "(1,2)[Pkinase] Protein kinase domain|(1,2)[Pkinase_Tyr] Protein tyrosine kinase|(3,4,5)[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(3,4,5)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "(1,2,4)EC4.6.1.2"; similar_genes "(1,2)ANPRB_BOVIN(e-value:1.4e-10;bit-score:64.0)(4)GCY1_CAEEL(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1124471 1124502 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.5"; Scaffold008 rebuild exon 1124603 1124826 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.5"; Scaffold008 rebuild exon 1124885 1125171 . - . gene_id "RvY_13081"; transcript_id "RvY_13081.5"; Scaffold008 rebuild transcript 1129367 1130954 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1129367 1129584 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.1"; Scaffold008 rebuild exon 1129832 1130137 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.1"; Scaffold008 rebuild exon 1130540 1130954 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.1"; Scaffold008 rebuild transcript 1129212 1130954 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.2"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1129212 1129298 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.2"; Scaffold008 rebuild exon 1129433 1129471 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.2"; Scaffold008 rebuild exon 1129541 1129584 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.2"; Scaffold008 rebuild exon 1129832 1130137 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.2"; Scaffold008 rebuild exon 1130540 1130954 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.2"; Scaffold008 rebuild transcript 1126708 1129543 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1126708 1126823 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild exon 1126921 1127050 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild exon 1127228 1127458 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild exon 1128993 1129130 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild exon 1129221 1129298 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild exon 1129433 1129471 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild exon 1129541 1129543 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.3"; Scaffold008 rebuild transcript 1127041 1129543 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1127041 1127052 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; Scaffold008 rebuild exon 1127228 1127458 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; Scaffold008 rebuild exon 1128993 1129130 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; Scaffold008 rebuild exon 1129221 1129298 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; Scaffold008 rebuild exon 1129433 1129471 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; Scaffold008 rebuild exon 1129541 1129543 . - . gene_id "RvY_13082"; transcript_id "RvY_13082.4"; Scaffold008 rebuild transcript 1131187 1131459 . + . gene_id "RvY_13083"; transcript_id "RvY_13083.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1131187 1131459 . + . gene_id "RvY_13083"; transcript_id "RvY_13083.1"; Scaffold008 rebuild transcript 1133240 1135077 . + . gene_id "RvY_13084"; transcript_id "RvY_13084.1"; gene_name "STYKc"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase."; EC "EC2.7.11.1"; similar_genes "TSSK2_HUMAN(e-value:5.4e-14;bit-score:76.0)"; Scaffold008 rebuild exon 1133240 1133629 . + . gene_id "RvY_13084"; transcript_id "RvY_13084.1"; Scaffold008 rebuild exon 1133718 1133801 . + . gene_id "RvY_13084"; transcript_id "RvY_13084.1"; Scaffold008 rebuild exon 1134250 1135077 . + . gene_id "RvY_13084"; transcript_id "RvY_13084.1"; Scaffold008 rebuild transcript 1135222 1137441 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; gene_name "SQLE"; annotation "putative Squalene monooxygenase"; Pfam "[FAD_binding_3] FAD binding domain|[DAO] FAD dependent oxidoreductase|[SE] Squalene epoxidase"; CDD "Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus."; EC "EC1.14.99.7"; KO "K00511"; similar_genes "ERG1_MOUSE(e-value:3.7e-36;bit-score:149.0)"; Scaffold008 rebuild exon 1135222 1135420 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild exon 1135499 1135586 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild exon 1135657 1135995 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild exon 1136170 1136555 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild exon 1136617 1136794 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild exon 1136906 1137134 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild exon 1137325 1137441 . - . gene_id "RvY_13085"; transcript_id "RvY_13085.1"; Scaffold008 rebuild transcript 1138021 1140610 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; annotation "hypothetical protein."; Pfam "[FPN1] Ferroportin1 (FPN1)"; KO "(1)K14685"; similar_genes "S40A1_DANRE(e-value:1.1e-16;bit-score:85.0)"; Scaffold008 rebuild exon 1138021 1138363 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1138686 1139040 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1139247 1139565 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1139654 1139727 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1139789 1139858 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1139944 1140104 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1140161 1140320 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1140431 1140492 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild exon 1140568 1140610 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.1"; Scaffold008 rebuild transcript 1139839 1141036 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.2"; annotation "hypothetical protein."; Pfam "[FPN1] Ferroportin1 (FPN1)"; KO "(1)K14685"; similar_genes "S40A1_DANRE(e-value:1.1e-16;bit-score:85.0)"; Scaffold008 rebuild exon 1139839 1140104 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.2"; Scaffold008 rebuild exon 1140161 1140320 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.2"; Scaffold008 rebuild exon 1140431 1140492 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.2"; Scaffold008 rebuild exon 1140568 1141036 . - . gene_id "RvY_13086"; transcript_id "RvY_13086.2"; Scaffold008 rebuild transcript 1142235 1142390 . - . gene_id "RvY_13087"; transcript_id "RvY_13087.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1142235 1142390 . - . gene_id "RvY_13087"; transcript_id "RvY_13087.1"; Scaffold008 rebuild transcript 1142900 1143910 . + . gene_id "RvY_13088"; transcript_id "RvY_13088.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1142900 1143017 . + . gene_id "RvY_13088"; transcript_id "RvY_13088.1"; Scaffold008 rebuild exon 1143084 1143687 . + . gene_id "RvY_13088"; transcript_id "RvY_13088.1"; Scaffold008 rebuild exon 1143745 1143910 . + . gene_id "RvY_13088"; transcript_id "RvY_13088.1"; Scaffold008 rebuild transcript 1144013 1144453 . + . gene_id "RvY_13089"; transcript_id "RvY_13089.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1144013 1144453 . + . gene_id "RvY_13089"; transcript_id "RvY_13089.1"; Scaffold008 rebuild transcript 1145261 1145476 . + . gene_id "RvY_13090"; transcript_id "RvY_13090.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1145261 1145476 . + . gene_id "RvY_13090"; transcript_id "RvY_13090.1"; Scaffold008 rebuild transcript 1145541 1145779 . + . gene_id "RvY_13091"; transcript_id "RvY_13091.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1145541 1145634 . + . gene_id "RvY_13091"; transcript_id "RvY_13091.1"; Scaffold008 rebuild exon 1145733 1145779 . + . gene_id "RvY_13091"; transcript_id "RvY_13091.1"; Scaffold008 rebuild transcript 1145805 1146125 . - . gene_id "RvY_13092"; transcript_id "RvY_13092.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1145805 1146125 . - . gene_id "RvY_13092"; transcript_id "RvY_13092.1"; Scaffold008 rebuild transcript 1146584 1147033 . + . gene_id "RvY_13093"; transcript_id "RvY_13093.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1146584 1147033 . + . gene_id "RvY_13093"; transcript_id "RvY_13093.1"; Scaffold008 rebuild transcript 1147996 1149446 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; gene_name "DHDH"; annotation "dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20 1.1.1.179]"; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; EC "EC1.-.-.-|EC1.1.1.179|EC1.3.1.20"; KO "K00078"; similar_genes "YKJ6_SCHPO(e-value:6.7e-08;bit-score:55.0)"; Scaffold008 rebuild exon 1147996 1148088 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; Scaffold008 rebuild exon 1148189 1148300 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; Scaffold008 rebuild exon 1148400 1148563 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; Scaffold008 rebuild exon 1148643 1148895 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; Scaffold008 rebuild exon 1148955 1149079 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; Scaffold008 rebuild exon 1149156 1149446 . + . gene_id "RvY_13094"; transcript_id "RvY_13094.1"; Scaffold008 rebuild transcript 1150497 1152004 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; gene_name "DHDH"; annotation "dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20 1.1.1.179]"; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; EC "EC1.1.1.179|EC1.3.1.20"; KO "K00078"; similar_genes "DHDH_RABIT(e-value:2.0e-11;bit-score:67.0)"; Scaffold008 rebuild exon 1150497 1150589 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; Scaffold008 rebuild exon 1150688 1150799 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; Scaffold008 rebuild exon 1150890 1151053 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; Scaffold008 rebuild exon 1151129 1151381 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; Scaffold008 rebuild exon 1151470 1151594 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; Scaffold008 rebuild exon 1151714 1152004 . + . gene_id "RvY_13095"; transcript_id "RvY_13095.1"; Scaffold008 rebuild transcript 1152554 1153956 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; gene_name "DHDH"; annotation "dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20 1.1.1.179]"; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; EC "EC1.-.-.-|EC1.1.1.179|EC1.3.1.20"; KO "K00078"; similar_genes "YKJ6_SCHPO(e-value:1.0e-08;bit-score:58.0)"; Scaffold008 rebuild exon 1152554 1152667 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; Scaffold008 rebuild exon 1152742 1152853 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; Scaffold008 rebuild exon 1152925 1153088 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; Scaffold008 rebuild exon 1153152 1153404 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; Scaffold008 rebuild exon 1153462 1153586 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; Scaffold008 rebuild exon 1153666 1153956 . + . gene_id "RvY_13096"; transcript_id "RvY_13096.1"; Scaffold008 rebuild transcript 1154524 1155319 . - . gene_id "RvY_13097"; transcript_id "RvY_13097.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1154524 1154949 . - . gene_id "RvY_13097"; transcript_id "RvY_13097.1"; Scaffold008 rebuild exon 1155275 1155319 . - . gene_id "RvY_13097"; transcript_id "RvY_13097.1"; Scaffold008 rebuild transcript 1154549 1155761 . + . gene_id "RvY_13098"; transcript_id "RvY_13098.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold008 rebuild exon 1154549 1154630 . + . gene_id "RvY_13098"; transcript_id "RvY_13098.1"; Scaffold008 rebuild exon 1154706 1154894 . + . gene_id "RvY_13098"; transcript_id "RvY_13098.1"; Scaffold008 rebuild exon 1155028 1155132 . + . gene_id "RvY_13098"; transcript_id "RvY_13098.1"; Scaffold008 rebuild exon 1155245 1155307 . + . gene_id "RvY_13098"; transcript_id "RvY_13098.1"; Scaffold008 rebuild exon 1155388 1155761 . + . gene_id "RvY_13098"; transcript_id "RvY_13098.1"; Scaffold008 rebuild transcript 1155377 1155769 . - . gene_id "RvY_13099"; transcript_id "RvY_13099.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1155377 1155769 . - . gene_id "RvY_13099"; transcript_id "RvY_13099.1"; Scaffold008 rebuild transcript 1156550 1157066 . - . gene_id "RvY_13100"; transcript_id "RvY_13100.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1156550 1156686 . - . gene_id "RvY_13100"; transcript_id "RvY_13100.1"; Scaffold008 rebuild exon 1156817 1157066 . - . gene_id "RvY_13100"; transcript_id "RvY_13100.1"; Scaffold008 rebuild transcript 1159140 1159520 . + . gene_id "RvY_13101"; transcript_id "RvY_13101.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1159140 1159520 . + . gene_id "RvY_13101"; transcript_id "RvY_13101.1"; Scaffold008 rebuild transcript 1159093 1159428 . + . gene_id "RvY_13101"; transcript_id "RvY_13101.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1159093 1159428 . + . gene_id "RvY_13101"; transcript_id "RvY_13101.2"; Scaffold008 rebuild transcript 1163631 1164008 . - . gene_id "RvY_13102"; transcript_id "RvY_13102.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1163631 1164008 . - . gene_id "RvY_13102"; transcript_id "RvY_13102.1"; Scaffold008 rebuild transcript 1165187 1165423 . + . gene_id "RvY_13103"; transcript_id "RvY_13103.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1165187 1165423 . + . gene_id "RvY_13103"; transcript_id "RvY_13103.1"; Scaffold008 rebuild transcript 1165925 1166248 . + . gene_id "RvY_13104"; transcript_id "RvY_13104.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1165925 1166248 . + . gene_id "RvY_13104"; transcript_id "RvY_13104.1"; Scaffold008 rebuild transcript 1166810 1167052 . - . gene_id "RvY_13105"; transcript_id "RvY_13105.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1166810 1167052 . - . gene_id "RvY_13105"; transcript_id "RvY_13105.1"; Scaffold008 rebuild transcript 1172386 1180205 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; gene_name "RasGAP_DAB2IP"; annotation "putative Ras GTPase-activating protein gap-2"; Pfam "[RasGAP] GTPase-activator protein for Ras-like GTPase|[DUF3498]|[C2]"; CDD "The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known."; similar_genes "GAP2_CAEEL(e-value:9.2e-31;bit-score:131.0)"; Scaffold008 rebuild exon 1172386 1172437 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1174186 1174663 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1174950 1175063 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1175188 1175314 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1175607 1175722 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1175818 1176082 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1176490 1177083 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1177448 1177787 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1178073 1178408 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1178943 1179439 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1179521 1179723 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild exon 1179896 1180205 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.1"; Scaffold008 rebuild transcript 1166861 1180205 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; gene_name "RasGAP_DAB2IP"; annotation "putative Ras GTPase-activating protein gap-2"; Pfam "[RasGAP] GTPase-activator protein for Ras-like GTPase|[DUF3498]|[C2]"; CDD "The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known."; similar_genes "GAP2_CAEEL(e-value:9.2e-31;bit-score:131.0)"; Scaffold008 rebuild exon 1166861 1166909 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1174186 1174663 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1174950 1175063 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1175188 1175314 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1175607 1175722 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1175818 1176082 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1176490 1177083 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1177448 1177787 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1178073 1178408 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1178943 1179439 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1179521 1179723 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild exon 1179896 1180205 . + . gene_id "RvY_13106"; transcript_id "RvY_13106.2"; Scaffold008 rebuild transcript 1180675 1181577 . - . gene_id "RvY_13107"; transcript_id "RvY_13107.1"; annotation "hypothetical protein."; Pfam "[DOMON]"; Scaffold008 rebuild exon 1180675 1180736 . - . gene_id "RvY_13107"; transcript_id "RvY_13107.1"; Scaffold008 rebuild exon 1180815 1180968 . - . gene_id "RvY_13107"; transcript_id "RvY_13107.1"; Scaffold008 rebuild exon 1181088 1181207 . - . gene_id "RvY_13107"; transcript_id "RvY_13107.1"; Scaffold008 rebuild exon 1181317 1181577 . - . gene_id "RvY_13107"; transcript_id "RvY_13107.1"; Scaffold008 rebuild transcript 1181914 1183953 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; gene_name "COG2123"; annotation "hypothetical protein."; CDD "RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]"; Scaffold008 rebuild exon 1181914 1182080 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1182390 1182496 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1182580 1182700 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1182779 1182875 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1182959 1183161 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1183231 1183267 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1183411 1183481 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1183590 1183659 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1183746 1183782 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild exon 1183931 1183953 . - . gene_id "RvY_13108"; transcript_id "RvY_13108.1"; Scaffold008 rebuild transcript 1184712 1186746 . - . gene_id "RvY_13109"; transcript_id "RvY_13109.1"; gene_name "alpha_CA"; annotation "hypothetical protein."; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold008 rebuild exon 1184712 1185046 . - . gene_id "RvY_13109"; transcript_id "RvY_13109.1"; Scaffold008 rebuild exon 1185254 1185419 . - . gene_id "RvY_13109"; transcript_id "RvY_13109.1"; Scaffold008 rebuild exon 1185560 1185714 . - . gene_id "RvY_13109"; transcript_id "RvY_13109.1"; Scaffold008 rebuild exon 1186122 1186301 . - . gene_id "RvY_13109"; transcript_id "RvY_13109.1"; Scaffold008 rebuild exon 1186548 1186746 . - . gene_id "RvY_13109"; transcript_id "RvY_13109.1"; Scaffold008 rebuild transcript 1189554 1190485 . + . gene_id "RvY_13110"; transcript_id "RvY_13110.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1189554 1189836 . + . gene_id "RvY_13110"; transcript_id "RvY_13110.1"; Scaffold008 rebuild exon 1189934 1190111 . + . gene_id "RvY_13110"; transcript_id "RvY_13110.1"; Scaffold008 rebuild exon 1190272 1190485 . + . gene_id "RvY_13110"; transcript_id "RvY_13110.1"; Scaffold008 rebuild transcript 1191110 1191691 . - . gene_id "RvY_13111"; transcript_id "RvY_13111.1"; gene_name "folA"; annotation "dihydrofolate reductase [EC:1.5.1.3]"; Pfam "[DHFR_1] Dihydrofolate reductase"; EC "EC1.5.1.3"; KO "K00287"; similar_genes "DRTS_DAUCA(e-value:5.5e-16;bit-score:82.0)"; Scaffold008 rebuild exon 1191110 1191691 . - . gene_id "RvY_13111"; transcript_id "RvY_13111.1"; Scaffold008 rebuild transcript 1192495 1196051 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; gene_name "PRK02224"; annotation "hypothetical protein."; CDD "chromosome segregation protein; Provisional"; Scaffold008 rebuild exon 1192495 1192560 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1192654 1192720 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1192842 1192906 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1192995 1193417 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1193478 1193705 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1193908 1194424 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1194688 1195047 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1195198 1195548 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1195759 1195919 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild exon 1195989 1196051 . + . gene_id "RvY_13112"; transcript_id "RvY_13112.1"; Scaffold008 rebuild transcript 1196903 1200880 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1196903 1197169 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild exon 1197536 1198774 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild exon 1199539 1199626 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild exon 1199709 1199911 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild exon 1200006 1200242 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild exon 1200450 1200684 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild exon 1200831 1200880 . + . gene_id "RvY_13113"; transcript_id "RvY_13113.1"; Scaffold008 rebuild transcript 1201596 1203764 . + . gene_id "RvY_13114"; transcript_id "RvY_13114.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1201596 1201760 . + . gene_id "RvY_13114"; transcript_id "RvY_13114.1"; Scaffold008 rebuild exon 1201814 1202926 . + . gene_id "RvY_13114"; transcript_id "RvY_13114.1"; Scaffold008 rebuild exon 1203142 1203330 . + . gene_id "RvY_13114"; transcript_id "RvY_13114.1"; Scaffold008 rebuild exon 1203407 1203627 . + . gene_id "RvY_13114"; transcript_id "RvY_13114.1"; Scaffold008 rebuild exon 1203746 1203764 . + . gene_id "RvY_13114"; transcript_id "RvY_13114.1"; Scaffold008 rebuild transcript 1204359 1204887 . + . gene_id "RvY_13115"; transcript_id "RvY_13115.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1204359 1204490 . + . gene_id "RvY_13115"; transcript_id "RvY_13115.1"; Scaffold008 rebuild exon 1204579 1204887 . + . gene_id "RvY_13115"; transcript_id "RvY_13115.1"; Scaffold008 rebuild transcript 1205503 1207563 . - . gene_id "RvY_13116"; transcript_id "RvY_13116.1"; gene_name "CAP_ED"; annotation "hypothetical protein."; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; Scaffold008 rebuild exon 1205503 1206409 . - . gene_id "RvY_13116"; transcript_id "RvY_13116.1"; Scaffold008 rebuild exon 1206734 1207563 . - . gene_id "RvY_13116"; transcript_id "RvY_13116.1"; Scaffold008 rebuild transcript 1207976 1208374 . - . gene_id "RvY_13117"; transcript_id "RvY_13117.1"; gene_name "PHF5A"; annotation "PHD finger-like domain-containing protein 5A"; Pfam "[PHF5] PHF5-like protein"; KO "K12834"; similar_genes "PHF5A_MOUSE(e-value:3.9e-61;bit-score:232.0)"; Scaffold008 rebuild exon 1207976 1207982 . - . gene_id "RvY_13117"; transcript_id "RvY_13117.1"; Scaffold008 rebuild exon 1208046 1208374 . - . gene_id "RvY_13117"; transcript_id "RvY_13117.1"; Scaffold008 rebuild transcript 1208897 1211866 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; gene_name "SrmB"; annotation "Probable ATP-dependent RNA helicase DDX47"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K14777"; similar_genes "DDX47_BOVIN(e-value:3.6e-172;bit-score:601.0)"; Scaffold008 rebuild exon 1208897 1208986 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1209126 1209219 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1209308 1209496 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1209586 1209657 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1209738 1209856 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1209953 1210024 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1210275 1210391 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1210488 1210634 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1210742 1210818 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1211091 1211222 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild exon 1211503 1211866 . + . gene_id "RvY_13118"; transcript_id "RvY_13118.1"; Scaffold008 rebuild transcript 1212933 1221825 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; gene_name "B41"; annotation "putative Band 4.1-like protein 5"; Pfam "[FA] FERM adjacent (FA)|[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "E41L5_BOVIN(e-value:7.9e-47;bit-score:185.0)"; Scaffold008 rebuild exon 1212933 1213082 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1218045 1218149 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1218227 1218269 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1218341 1218419 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1218616 1218713 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1218912 1219038 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1219098 1219280 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1219366 1219842 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1219959 1220191 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1220269 1220545 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1220629 1220706 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1220802 1220919 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1221031 1221318 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild exon 1221571 1221825 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.1"; Scaffold008 rebuild transcript 1212933 1221426 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; gene_name "B41"; annotation "putative Band 4.1-like protein 5"; Pfam "[FA] FERM adjacent (FA)|[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "E41L5_BOVIN(e-value:7.9e-47;bit-score:185.0)"; Scaffold008 rebuild exon 1212933 1213082 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1218045 1218149 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1218227 1218269 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1218341 1218419 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1218616 1218713 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1218912 1219038 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1219098 1219280 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1219366 1219842 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1219959 1220191 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1220269 1220545 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1220629 1220706 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1220802 1220919 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild exon 1221031 1221426 . + . gene_id "RvY_13119"; transcript_id "RvY_13119.2"; Scaffold008 rebuild transcript 1222214 1223601 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; gene_name "RABL3"; annotation "Rab-like protein 3"; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown."; KO "K07933"; Scaffold008 rebuild exon 1222214 1222279 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1222351 1222398 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1222492 1222563 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1222618 1222795 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1222874 1223041 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1223151 1223278 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1223384 1223478 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild exon 1223589 1223601 . - . gene_id "RvY_13120"; transcript_id "RvY_13120.1"; Scaffold008 rebuild transcript 1224190 1225188 . + . gene_id "RvY_13121"; transcript_id "RvY_13121.1"; annotation "hypothetical protein."; Pfam "[DUF3752]"; Scaffold008 rebuild exon 1224190 1224280 . + . gene_id "RvY_13121"; transcript_id "RvY_13121.1"; Scaffold008 rebuild exon 1224356 1225188 . + . gene_id "RvY_13121"; transcript_id "RvY_13121.1"; Scaffold008 rebuild transcript 1227497 1227670 . + . gene_id "RvY_13122"; transcript_id "RvY_13122.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1227497 1227670 . + . gene_id "RvY_13122"; transcript_id "RvY_13122.1"; Scaffold008 rebuild transcript 1228707 1229745 . + . gene_id "RvY_13123"; transcript_id "RvY_13123.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1228707 1228823 . + . gene_id "RvY_13123"; transcript_id "RvY_13123.1"; Scaffold008 rebuild exon 1229587 1229745 . + . gene_id "RvY_13123"; transcript_id "RvY_13123.1"; Scaffold008 rebuild transcript 1231854 1232406 . - . gene_id "RvY_13124"; transcript_id "RvY_13124.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1231854 1232174 . - . gene_id "RvY_13124"; transcript_id "RvY_13124.1"; Scaffold008 rebuild exon 1232347 1232406 . - . gene_id "RvY_13124"; transcript_id "RvY_13124.1"; Scaffold008 rebuild transcript 1235513 1236046 . - . gene_id "RvY_13125"; transcript_id "RvY_13125.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold008 rebuild exon 1235513 1236046 . - . gene_id "RvY_13125"; transcript_id "RvY_13125.1"; Scaffold008 rebuild transcript 1238703 1239059 . - . gene_id "RvY_13126"; transcript_id "RvY_13126.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1238703 1239059 . - . gene_id "RvY_13126"; transcript_id "RvY_13126.1"; Scaffold008 rebuild transcript 1242271 1244170 . + . gene_id "RvY_13127"; transcript_id "RvY_13127.1"; gene_name "USP10"; annotation "ubiquitin carboxyl-terminal hydrolase 10 [EC:3.1.2.15]"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; EC "EC3.1.2.15"; KO "K11841"; Scaffold008 rebuild exon 1242271 1242793 . + . gene_id "RvY_13127"; transcript_id "RvY_13127.1"; Scaffold008 rebuild exon 1242865 1243397 . + . gene_id "RvY_13127"; transcript_id "RvY_13127.1"; Scaffold008 rebuild exon 1243679 1244170 . + . gene_id "RvY_13127"; transcript_id "RvY_13127.1"; Scaffold008 rebuild transcript 1244674 1246560 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; gene_name "STKc_MAPK"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7."; EC "EC2.7.11.24"; similar_genes "MK12_MOUSE(e-value:5.3e-12;bit-score:69.0)"; Scaffold008 rebuild exon 1244674 1244831 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1244903 1245053 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1245112 1245279 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1245374 1245403 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1245483 1245660 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1245727 1245798 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1245900 1245979 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1246078 1246168 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1246284 1246473 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild exon 1246548 1246560 . + . gene_id "RvY_13128"; transcript_id "RvY_13128.1"; Scaffold008 rebuild transcript 1247901 1248693 . + . gene_id "RvY_13129"; transcript_id "RvY_13129.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1247901 1248203 . + . gene_id "RvY_13129"; transcript_id "RvY_13129.1"; Scaffold008 rebuild exon 1248313 1248693 . + . gene_id "RvY_13129"; transcript_id "RvY_13129.1"; Scaffold008 rebuild transcript 1248838 1249941 . + . gene_id "RvY_13130"; transcript_id "RvY_13130.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1248838 1249029 . + . gene_id "RvY_13130"; transcript_id "RvY_13130.1"; Scaffold008 rebuild exon 1249273 1249941 . + . gene_id "RvY_13130"; transcript_id "RvY_13130.1"; Scaffold008 rebuild transcript 1249269 1249505 . - . gene_id "RvY_13131"; transcript_id "RvY_13131.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1249269 1249505 . - . gene_id "RvY_13131"; transcript_id "RvY_13131.1"; Scaffold008 rebuild transcript 1250683 1253643 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; gene_name "STKc_MAPK"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; CDD "The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7."; Scaffold008 rebuild exon 1250683 1250806 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; Scaffold008 rebuild exon 1250878 1250951 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; Scaffold008 rebuild exon 1251038 1251122 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; Scaffold008 rebuild exon 1251957 1252195 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; Scaffold008 rebuild exon 1252519 1252676 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; Scaffold008 rebuild exon 1253004 1253643 . + . gene_id "RvY_13132"; transcript_id "RvY_13132.1"; Scaffold008 rebuild transcript 1254807 1255476 . - . gene_id "RvY_13133"; transcript_id "RvY_13133.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1254807 1255159 . - . gene_id "RvY_13133"; transcript_id "RvY_13133.1"; Scaffold008 rebuild exon 1255290 1255476 . - . gene_id "RvY_13133"; transcript_id "RvY_13133.1"; Scaffold008 rebuild transcript 1255824 1256328 . + . gene_id "RvY_13134"; transcript_id "RvY_13134.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1255824 1256229 . + . gene_id "RvY_13134"; transcript_id "RvY_13134.1"; Scaffold008 rebuild exon 1256294 1256328 . + . gene_id "RvY_13134"; transcript_id "RvY_13134.1"; Scaffold008 rebuild transcript 1256443 1261812 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; gene_name "PDI_a_EFP1_N"; annotation "hypothetical protein."; Pfam "[Thioredoxin]"; CDD "PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox Scaffold008 rebuild exon 1256443 1256594 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1256675 1256888 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1257116 1257242 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1257320 1257426 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1257492 1257582 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1257646 1257758 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1257829 1257900 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1257958 1258086 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1258146 1258428 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1260052 1260440 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1260518 1260566 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1260661 1260848 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1260956 1261068 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1261166 1261246 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild exon 1261371 1261812 . + . gene_id "RvY_13135"; transcript_id "RvY_13135.1"; Scaffold008 rebuild transcript 1262256 1262549 . + . gene_id "RvY_13136"; transcript_id "RvY_13136.1"; annotation "hypothetical protein."; Pfam "[Dpy-30] Dpy-30 motif"; Scaffold008 rebuild exon 1262256 1262549 . + . gene_id "RvY_13136"; transcript_id "RvY_13136.1"; Scaffold008 rebuild transcript 1268111 1271045 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1268111 1268426 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild exon 1268744 1268819 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild exon 1268973 1269132 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild exon 1269822 1270026 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild exon 1270318 1270467 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild exon 1270530 1270616 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild exon 1270813 1271045 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.1"; Scaffold008 rebuild transcript 1268111 1270654 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1268111 1268426 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; Scaffold008 rebuild exon 1268744 1268819 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; Scaffold008 rebuild exon 1268973 1269132 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; Scaffold008 rebuild exon 1269822 1270026 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; Scaffold008 rebuild exon 1270318 1270467 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; Scaffold008 rebuild exon 1270530 1270654 . + . gene_id "RvY_13137"; transcript_id "RvY_13137.2"; Scaffold008 rebuild transcript 1271201 1271893 . - . gene_id "RvY_13138"; transcript_id "RvY_13138.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; similar_genes "EXPI_MOUSE(e-value:3.0e-08;bit-score:56.0)"; Scaffold008 rebuild exon 1271201 1271893 . - . gene_id "RvY_13138"; transcript_id "RvY_13138.1"; Scaffold008 rebuild transcript 1272755 1273582 . + . gene_id "RvY_13139"; transcript_id "RvY_13139.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1272755 1273031 . + . gene_id "RvY_13139"; transcript_id "RvY_13139.1"; Scaffold008 rebuild exon 1273135 1273411 . + . gene_id "RvY_13139"; transcript_id "RvY_13139.1"; Scaffold008 rebuild exon 1273516 1273582 . + . gene_id "RvY_13139"; transcript_id "RvY_13139.1"; Scaffold008 rebuild transcript 1273839 1274729 . - . gene_id "RvY_13140"; transcript_id "RvY_13140.1"; annotation "hypothetical protein."; Pfam "[WAP] WAP-type (Whey Acidic Protein) 'four-disulfide core'"; Scaffold008 rebuild exon 1273839 1274572 . - . gene_id "RvY_13140"; transcript_id "RvY_13140.1"; Scaffold008 rebuild exon 1274633 1274729 . - . gene_id "RvY_13140"; transcript_id "RvY_13140.1"; Scaffold008 rebuild transcript 1275242 1276423 . - . gene_id "RvY_13141"; transcript_id "RvY_13141.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1275242 1276423 . - . gene_id "RvY_13141"; transcript_id "RvY_13141.1"; Scaffold008 rebuild transcript 1276656 1277138 . - . gene_id "RvY_13142"; transcript_id "RvY_13142.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1276656 1276919 . - . gene_id "RvY_13142"; transcript_id "RvY_13142.1"; Scaffold008 rebuild exon 1277052 1277138 . - . gene_id "RvY_13142"; transcript_id "RvY_13142.1"; Scaffold008 rebuild transcript 1278391 1279771 . - . gene_id "RvY_13143"; transcript_id "RvY_13143.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GUC2D_HUMAN(e-value:2.0e-11;bit-score:67.0)"; Scaffold008 rebuild exon 1278391 1278426 . - . gene_id "RvY_13143"; transcript_id "RvY_13143.1"; Scaffold008 rebuild exon 1278716 1279230 . - . gene_id "RvY_13143"; transcript_id "RvY_13143.1"; Scaffold008 rebuild exon 1279558 1279771 . - . gene_id "RvY_13143"; transcript_id "RvY_13143.1"; Scaffold008 rebuild transcript 1282683 1283174 . - . gene_id "RvY_13144"; transcript_id "RvY_13144.1"; gene_name "(2)NDUFA5"; annotation "(1)hypothetical protein.(2)NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [EC:1.6.5.3 1.6.99.3]"; Pfam "[ETC_C1_NDUFA5] ETC complex I subunit conserved region"; EC "(2)EC1.6.5.3|EC1.6.99.3"; KO "(2)K03949"; Scaffold008 rebuild exon 1282683 1283174 . - . gene_id "RvY_13144"; transcript_id "RvY_13144.1"; Scaffold008 rebuild transcript 1282547 1282969 . - . gene_id "RvY_13144"; transcript_id "RvY_13144.2"; gene_name "(2)NDUFA5"; annotation "(1)hypothetical protein.(2)NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [EC:1.6.5.3 1.6.99.3]"; Pfam "[ETC_C1_NDUFA5] ETC complex I subunit conserved region"; EC "(2)EC1.6.5.3|EC1.6.99.3"; KO "(2)K03949"; Scaffold008 rebuild exon 1282547 1282969 . - . gene_id "RvY_13144"; transcript_id "RvY_13144.2"; Scaffold008 rebuild transcript 1283469 1288532 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; gene_name "TFIID2"; annotation "Transcription initiation factor TFIID subunit 2"; Pfam "[Peptidase_M1] Peptidase family M1"; CDD "Aminopeptidase N [Amino acid transport and metabolism]"; KO "K03128"; similar_genes "TAF2_MOUSE(e-value:9.5e-52;bit-score:201.0)"; Scaffold008 rebuild exon 1283469 1283539 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1283600 1283804 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1284070 1284605 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1284673 1284836 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1284926 1285248 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1285373 1285775 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1285908 1286133 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1286207 1286386 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1286614 1286980 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1287160 1287737 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1287986 1288286 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild exon 1288356 1288532 . + . gene_id "RvY_13145"; transcript_id "RvY_13145.1"; Scaffold008 rebuild transcript 1288808 1290134 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; annotation "hypothetical protein."; Pfam "[RRP7] Ribosomal RNA-processing protein 7 (RRP7)"; KO "(1)K14545"; similar_genes "(1)RRP7A_MOUSE(e-value:2.6e-07;bit-score:53.0)"; Scaffold008 rebuild exon 1288808 1288893 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild exon 1288970 1289018 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild exon 1289092 1289339 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild exon 1289419 1289548 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild exon 1289624 1289755 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild exon 1289864 1290003 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild exon 1290122 1290134 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.1"; Scaffold008 rebuild transcript 1288920 1290134 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; annotation "hypothetical protein."; Pfam "[RRP7] Ribosomal RNA-processing protein 7 (RRP7)"; KO "(1)K14545"; similar_genes "(1)RRP7A_MOUSE(e-value:2.6e-07;bit-score:53.0)"; Scaffold008 rebuild exon 1288920 1289018 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; Scaffold008 rebuild exon 1289092 1289339 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; Scaffold008 rebuild exon 1289419 1289548 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; Scaffold008 rebuild exon 1289624 1289755 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; Scaffold008 rebuild exon 1289864 1290003 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; Scaffold008 rebuild exon 1290122 1290134 . - . gene_id "RvY_13146"; transcript_id "RvY_13146.2"; Scaffold008 rebuild transcript 1290042 1290281 . + . gene_id "RvY_13147"; transcript_id "RvY_13147.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1290042 1290281 . + . gene_id "RvY_13147"; transcript_id "RvY_13147.1"; Scaffold008 rebuild transcript 1290602 1290940 . + . gene_id "RvY_13148"; transcript_id "RvY_13148.1"; gene_name "OST2"; annotation "putative Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1"; Pfam "[DAD] DAD family"; EC "EC2.4.1.119"; KO "K12668"; similar_genes "DAD1_DROME(e-value:1.9e-37;bit-score:153.0)"; Scaffold008 rebuild exon 1290602 1290940 . + . gene_id "RvY_13148"; transcript_id "RvY_13148.1"; Scaffold008 rebuild transcript 1292598 1294268 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; gene_name "mnmA"; annotation "putative Mitochondrial tRNA-specific 2-thiouridylase 1"; Pfam "[tRNA_Me_trans] tRNA methyl transferase"; EC "EC2.1.1.61|EC2.8.1.-"; KO "K00566"; similar_genes "MTU1_CHICK(e-value:4.5e-43;bit-score:172.0)"; Scaffold008 rebuild exon 1292598 1292990 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild exon 1293049 1293149 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild exon 1293244 1293364 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild exon 1293450 1293622 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild exon 1293686 1293870 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild exon 1293948 1294113 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild exon 1294187 1294268 . - . gene_id "RvY_13149"; transcript_id "RvY_13149.1"; Scaffold008 rebuild transcript 1294785 1295688 . + . gene_id "RvY_13150"; transcript_id "RvY_13150.1"; gene_name "Ribosomal_L22"; annotation "putative 39S ribosomal protein L22, mitochondrial"; Pfam "[Ribosomal_L22] Ribosomal protein L22p/L17e"; CDD "Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome."; similar_genes "RM22_BOVIN(e-value:2.2e-36;bit-score:150.0)"; Scaffold008 rebuild exon 1294785 1295235 . + . gene_id "RvY_13150"; transcript_id "RvY_13150.1"; Scaffold008 rebuild exon 1295375 1295688 . + . gene_id "RvY_13150"; transcript_id "RvY_13150.1"; Scaffold008 rebuild transcript 1296376 1298564 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; gene_name "AMFR"; annotation "autocrine motility factor receptor [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[CUE]|[zf-RING_2] Ring finger domain|[zf-C3HC4] Zinc finger, C3HC4 type (RING finger)"; CDD "HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.19"; KO "K10636"; similar_genes "AMFR_MOUSE(e-value:8.9e-10;bit-score:62.0)"; Scaffold008 rebuild exon 1296376 1296636 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1296706 1296953 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1297052 1297353 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1297425 1297545 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1297608 1297769 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1297858 1298036 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1298093 1298274 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild exon 1298337 1298564 . + . gene_id "RvY_13151"; transcript_id "RvY_13151.1"; Scaffold008 rebuild transcript 1299077 1300916 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1299077 1299258 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; Scaffold008 rebuild exon 1299330 1299635 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; Scaffold008 rebuild exon 1299849 1299990 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; Scaffold008 rebuild exon 1300054 1300159 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; Scaffold008 rebuild exon 1300232 1300396 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; Scaffold008 rebuild exon 1300690 1300916 . - . gene_id "RvY_13152"; transcript_id "RvY_13152.1"; Scaffold008 rebuild transcript 1300714 1301019 . + . gene_id "RvY_13153"; transcript_id "RvY_13153.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1300714 1301019 . + . gene_id "RvY_13153"; transcript_id "RvY_13153.1"; Scaffold008 rebuild transcript 1302355 1302720 . + . gene_id "RvY_13154"; transcript_id "RvY_13154.1"; annotation "hypothetical protein."; Pfam "[CENP-X] CENP-S associating Centromere protein X"; KO "K15360"; Scaffold008 rebuild exon 1302355 1302720 . + . gene_id "RvY_13154"; transcript_id "RvY_13154.1"; Scaffold008 rebuild transcript 1302910 1305304 . + . gene_id "RvY_13155"; transcript_id "RvY_13155.1"; gene_name "DUS3"; annotation "tRNA-dihydrouridine synthase 3-like"; Pfam "[zf-CCCH] Zinc finger C-x8-C-x5-C-x3-H type (and similar)|[Dus] Dihydrouridine synthase (Dus)"; CDD "Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present."; EC "EC1.-.-.-"; KO "K05544"; similar_genes "DUS3L_MOUSE(e-value:1.1e-56;bit-score:217.0)"; Scaffold008 rebuild exon 1302910 1303005 . + . gene_id "RvY_13155"; transcript_id "RvY_13155.1"; Scaffold008 rebuild exon 1303104 1303776 . + . gene_id "RvY_13155"; transcript_id "RvY_13155.1"; Scaffold008 rebuild exon 1303854 1304442 . + . gene_id "RvY_13155"; transcript_id "RvY_13155.1"; Scaffold008 rebuild exon 1304683 1305080 . + . gene_id "RvY_13155"; transcript_id "RvY_13155.1"; Scaffold008 rebuild exon 1305162 1305304 . + . gene_id "RvY_13155"; transcript_id "RvY_13155.1"; Scaffold008 rebuild transcript 1306191 1308739 . + . gene_id "RvY_13156"; transcript_id "RvY_13156.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold008 rebuild exon 1306191 1306401 . + . gene_id "RvY_13156"; transcript_id "RvY_13156.1"; Scaffold008 rebuild exon 1306516 1306659 . + . gene_id "RvY_13156"; transcript_id "RvY_13156.1"; Scaffold008 rebuild exon 1306765 1307511 . + . gene_id "RvY_13156"; transcript_id "RvY_13156.1"; Scaffold008 rebuild exon 1308549 1308739 . + . gene_id "RvY_13156"; transcript_id "RvY_13156.1"; Scaffold008 rebuild transcript 1312200 1314729 . - . gene_id "RvY_13157"; transcript_id "RvY_13157.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold008 rebuild exon 1312200 1313240 . - . gene_id "RvY_13157"; transcript_id "RvY_13157.1"; Scaffold008 rebuild exon 1313308 1314729 . - . gene_id "RvY_13157"; transcript_id "RvY_13157.1"; Scaffold008 rebuild transcript 1316077 1316669 . + . gene_id "RvY_13158"; transcript_id "RvY_13158.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1316077 1316362 . + . gene_id "RvY_13158"; transcript_id "RvY_13158.1"; Scaffold008 rebuild exon 1316662 1316669 . + . gene_id "RvY_13158"; transcript_id "RvY_13158.1"; Scaffold008 rebuild transcript 1318267 1318680 . + . gene_id "RvY_13159"; transcript_id "RvY_13159.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1318267 1318680 . + . gene_id "RvY_13159"; transcript_id "RvY_13159.1"; Scaffold008 rebuild transcript 1320297 1322315 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold008 rebuild exon 1320297 1320508 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1320553 1320729 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1320776 1320878 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1321091 1321312 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1321449 1321531 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1321560 1321882 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1321913 1321940 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild exon 1321979 1322315 . - . gene_id "RvY_13160"; transcript_id "RvY_13160.1"; Scaffold008 rebuild transcript 1323960 1326666 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; gene_name "2A0303"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease|[AA_permease_C] C-terminus of AA_permease"; CDD "cationic amino acid transport permease."; similar_genes "CTR3_MOUSE(e-value:4.0e-10;bit-score:63.0)"; Scaffold008 rebuild exon 1323960 1324523 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1324683 1324928 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1324986 1325119 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1325312 1325404 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1325471 1325605 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1325687 1325743 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1325955 1326207 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1326283 1326422 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild exon 1326498 1326666 . - . gene_id "RvY_13161"; transcript_id "RvY_13161.1"; Scaffold008 rebuild transcript 1327257 1329911 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; gene_name "LA"; annotation "lupus La protein"; Pfam "[La]|[RRM_3] RNA binding motif"; CDD "Domain in the RNA-binding Lupus La protein; unknown function."; KO "K11090"; Scaffold008 rebuild exon 1327257 1327315 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1327385 1327498 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1327553 1327741 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1327819 1327999 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1328423 1328555 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1328642 1328695 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1328753 1328859 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1328982 1329107 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1329258 1329413 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1329523 1329633 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild exon 1329702 1329911 . - . gene_id "RvY_13162"; transcript_id "RvY_13162.1"; Scaffold008 rebuild transcript 1329604 1330047 . + . gene_id "RvY_13163"; transcript_id "RvY_13163.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1329604 1330047 . + . gene_id "RvY_13163"; transcript_id "RvY_13163.1"; Scaffold008 rebuild transcript 1330308 1330712 . + . gene_id "RvY_13164"; transcript_id "RvY_13164.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1330308 1330350 . + . gene_id "RvY_13164"; transcript_id "RvY_13164.1"; Scaffold008 rebuild exon 1330420 1330712 . + . gene_id "RvY_13164"; transcript_id "RvY_13164.1"; Scaffold008 rebuild transcript 1330550 1330828 . + . gene_id "RvY_13164"; transcript_id "RvY_13164.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1330550 1330828 . + . gene_id "RvY_13164"; transcript_id "RvY_13164.2"; Scaffold008 rebuild transcript 1331460 1332083 . - . gene_id "RvY_13165"; transcript_id "RvY_13165.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1331460 1331767 . - . gene_id "RvY_13165"; transcript_id "RvY_13165.1"; Scaffold008 rebuild exon 1331851 1331946 . - . gene_id "RvY_13165"; transcript_id "RvY_13165.1"; Scaffold008 rebuild exon 1332023 1332083 . - . gene_id "RvY_13165"; transcript_id "RvY_13165.1"; Scaffold008 rebuild transcript 1333531 1338578 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; gene_name "STK11"; annotation "serine/threonine-protein kinase 11 [EC:2.7.11.9]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1|EC2.7.11.9"; KO "K07298"; similar_genes "STK11_HUMAN(e-value:1.1e-16;bit-score:85.0)"; Scaffold008 rebuild exon 1333531 1333859 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild exon 1333972 1334345 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild exon 1334407 1334587 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild exon 1334899 1335089 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild exon 1337035 1337296 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild exon 1337703 1337945 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild exon 1338326 1338578 . + . gene_id "RvY_13166"; transcript_id "RvY_13166.1"; Scaffold008 rebuild transcript 1338586 1339116 . + . gene_id "RvY_13167"; transcript_id "RvY_13167.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1338586 1339116 . + . gene_id "RvY_13167"; transcript_id "RvY_13167.1"; Scaffold008 rebuild transcript 1339198 1342027 . - . gene_id "RvY_13168"; transcript_id "RvY_13168.1"; gene_name "Sec34"; annotation "hypothetical protein."; Pfam "[Sec34] Sec34-like family"; CDD "Sec34-like family. Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tether vesicles to the Golgi."; Scaffold008 rebuild exon 1339198 1340022 . - . gene_id "RvY_13168"; transcript_id "RvY_13168.1"; Scaffold008 rebuild exon 1340290 1341220 . - . gene_id "RvY_13168"; transcript_id "RvY_13168.1"; Scaffold008 rebuild exon 1341432 1342027 . - . gene_id "RvY_13168"; transcript_id "RvY_13168.1"; Scaffold008 rebuild transcript 1342555 1345583 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; gene_name "Kri1"; annotation "putative Protein KRI1 homolog"; Pfam "[Kri1] KRI1-like family|[Kri1_C] KRI1-like family C-terminal"; CDD "KRI1-like family. The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus."; KO "K14786"; similar_genes "KRI1_BOVIN(e-value:3.1e-29;bit-score:126.0)"; Scaffold008 rebuild exon 1342555 1342687 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1342777 1342856 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1342943 1343212 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1343320 1343600 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1343662 1344014 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1344079 1344408 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1344477 1344607 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild exon 1344726 1345583 . + . gene_id "RvY_13169"; transcript_id "RvY_13169.1"; Scaffold008 rebuild transcript 1345864 1346091 . - . gene_id "RvY_13170"; transcript_id "RvY_13170.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1345864 1346091 . - . gene_id "RvY_13170"; transcript_id "RvY_13170.1"; Scaffold008 rebuild transcript 1346738 1348175 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; gene_name "BI-1-like"; annotation "putative Growth hormone-inducible transmembrane protein"; Pfam "[Bax1-I] Inhibitor of apoptosis-promoting Bax1"; CDD "BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes."; similar_genes "GHITM_RAT(e-value:2.6e-43;bit-score:173.0)"; Scaffold008 rebuild exon 1346738 1346918 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild exon 1346979 1347090 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild exon 1347159 1347258 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild exon 1347319 1347544 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild exon 1347629 1347766 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild exon 1347851 1348001 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild exon 1348091 1348175 . + . gene_id "RvY_13171"; transcript_id "RvY_13171.1"; Scaffold008 rebuild transcript 1348479 1350982 . - . gene_id "RvY_13172"; transcript_id "RvY_13172.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1348479 1348714 . - . gene_id "RvY_13172"; transcript_id "RvY_13172.1"; Scaffold008 rebuild exon 1350940 1350982 . - . gene_id "RvY_13172"; transcript_id "RvY_13172.1"; Scaffold008 rebuild transcript 1352243 1352470 . + . gene_id "RvY_13173"; transcript_id "RvY_13173.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1352243 1352470 . + . gene_id "RvY_13173"; transcript_id "RvY_13173.1"; Scaffold008 rebuild transcript 1353152 1355028 . - . gene_id "RvY_13174"; transcript_id "RvY_13174.1"; gene_name "2A0114euk"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(1)[Sugar_tr] Sugar (and other) transporter"; CDD "Na(+)-dependent inorganic phosphate cotransporter."; similar_genes "(1)VGLU2_BOVIN(e-value:2.0e-07;bit-score:54.0)"; Scaffold008 rebuild exon 1353152 1354108 . - . gene_id "RvY_13174"; transcript_id "RvY_13174.1"; Scaffold008 rebuild exon 1354400 1354636 . - . gene_id "RvY_13174"; transcript_id "RvY_13174.1"; Scaffold008 rebuild exon 1354699 1355028 . - . gene_id "RvY_13174"; transcript_id "RvY_13174.1"; Scaffold008 rebuild transcript 1353152 1353994 . - . gene_id "RvY_13174"; transcript_id "RvY_13174.2"; gene_name "2A0114euk"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(1)[Sugar_tr] Sugar (and other) transporter"; CDD "Na(+)-dependent inorganic phosphate cotransporter."; similar_genes "(1)VGLU2_BOVIN(e-value:2.0e-07;bit-score:54.0)"; Scaffold008 rebuild exon 1353152 1353994 . - . gene_id "RvY_13174"; transcript_id "RvY_13174.2"; Scaffold008 rebuild transcript 1355296 1357888 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1355296 1355576 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild exon 1355926 1356091 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild exon 1356203 1356328 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild exon 1356400 1356708 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild exon 1356907 1357034 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild exon 1357427 1357549 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild exon 1357780 1357888 . - . gene_id "RvY_13175"; transcript_id "RvY_13175.1"; Scaffold008 rebuild transcript 1359905 1360751 . - . gene_id "RvY_13176"; transcript_id "RvY_13176.1"; annotation "hypothetical protein."; similar_genes "CX056_BOVIN(e-value:3.1e-14;bit-score:76.0)"; Scaffold008 rebuild exon 1359905 1359955 . - . gene_id "RvY_13176"; transcript_id "RvY_13176.1"; Scaffold008 rebuild exon 1360020 1360377 . - . gene_id "RvY_13176"; transcript_id "RvY_13176.1"; Scaffold008 rebuild exon 1360438 1360552 . - . gene_id "RvY_13176"; transcript_id "RvY_13176.1"; Scaffold008 rebuild exon 1360616 1360751 . - . gene_id "RvY_13176"; transcript_id "RvY_13176.1"; Scaffold008 rebuild transcript 1361788 1363912 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1361788 1361890 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1361973 1362104 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1362334 1362443 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1362534 1362584 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1362789 1363181 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1363257 1363373 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1363448 1363598 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild exon 1363722 1363912 . + . gene_id "RvY_13177"; transcript_id "RvY_13177.1"; Scaffold008 rebuild transcript 1364619 1365438 . - . gene_id "RvY_13178"; transcript_id "RvY_13178.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1364619 1364914 . - . gene_id "RvY_13178"; transcript_id "RvY_13178.1"; Scaffold008 rebuild exon 1364977 1365237 . - . gene_id "RvY_13178"; transcript_id "RvY_13178.1"; Scaffold008 rebuild exon 1365360 1365438 . - . gene_id "RvY_13178"; transcript_id "RvY_13178.1"; Scaffold008 rebuild transcript 1366119 1366478 . - . gene_id "RvY_13179"; transcript_id "RvY_13179.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1366119 1366478 . - . gene_id "RvY_13179"; transcript_id "RvY_13179.1"; Scaffold008 rebuild transcript 1368290 1369208 . - . gene_id "RvY_13180"; transcript_id "RvY_13180.1"; annotation "hypothetical protein."; Pfam "[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold008 rebuild exon 1368290 1368544 . - . gene_id "RvY_13180"; transcript_id "RvY_13180.1"; Scaffold008 rebuild exon 1368737 1368883 . - . gene_id "RvY_13180"; transcript_id "RvY_13180.1"; Scaffold008 rebuild exon 1368963 1369208 . - . gene_id "RvY_13180"; transcript_id "RvY_13180.1"; Scaffold008 rebuild transcript 1370156 1370470 . + . gene_id "RvY_13181"; transcript_id "RvY_13181.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1370156 1370272 . + . gene_id "RvY_13181"; transcript_id "RvY_13181.1"; Scaffold008 rebuild exon 1370336 1370470 . + . gene_id "RvY_13181"; transcript_id "RvY_13181.1"; Scaffold008 rebuild transcript 1370853 1371842 . + . gene_id "RvY_13182"; transcript_id "RvY_13182.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1370853 1370890 . + . gene_id "RvY_13182"; transcript_id "RvY_13182.1"; Scaffold008 rebuild exon 1371068 1371354 . + . gene_id "RvY_13182"; transcript_id "RvY_13182.1"; Scaffold008 rebuild exon 1371562 1371842 . + . gene_id "RvY_13182"; transcript_id "RvY_13182.1"; Scaffold008 rebuild transcript 1372581 1374669 . - . gene_id "RvY_13183"; transcript_id "RvY_13183.1"; gene_name "ERK1_2"; annotation "Mitogen-activated protein kinase 3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion."; EC "EC2.7.11.24"; KO "K04371"; similar_genes "MK03_RAT(e-value:1.3e-165;bit-score:579.0)"; Scaffold008 rebuild exon 1372581 1372898 . - . gene_id "RvY_13183"; transcript_id "RvY_13183.1"; Scaffold008 rebuild exon 1372970 1373049 . - . gene_id "RvY_13183"; transcript_id "RvY_13183.1"; Scaffold008 rebuild exon 1373288 1374123 . - . gene_id "RvY_13183"; transcript_id "RvY_13183.1"; Scaffold008 rebuild exon 1374560 1374669 . - . gene_id "RvY_13183"; transcript_id "RvY_13183.1"; Scaffold008 rebuild transcript 1374821 1376757 . + . gene_id "RvY_13184"; transcript_id "RvY_13184.1"; gene_name "PTZ00199"; annotation "hypothetical protein."; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "high mobility group protein; Provisional"; Scaffold008 rebuild exon 1374821 1375123 . + . gene_id "RvY_13184"; transcript_id "RvY_13184.1"; Scaffold008 rebuild exon 1375518 1375941 . + . gene_id "RvY_13184"; transcript_id "RvY_13184.1"; Scaffold008 rebuild exon 1376315 1376757 . + . gene_id "RvY_13184"; transcript_id "RvY_13184.1"; Scaffold008 rebuild transcript 1377655 1378642 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1377655 1377883 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.1"; Scaffold008 rebuild exon 1377961 1378200 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.1"; Scaffold008 rebuild exon 1378350 1378642 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.1"; Scaffold008 rebuild transcript 1377655 1378241 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1377655 1377883 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.2"; Scaffold008 rebuild exon 1377961 1378241 . + . gene_id "RvY_13185"; transcript_id "RvY_13185.2"; Scaffold008 rebuild transcript 1378627 1379862 . - . gene_id "RvY_13186"; transcript_id "RvY_13186.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold008 rebuild exon 1378627 1379862 . - . gene_id "RvY_13186"; transcript_id "RvY_13186.1"; Scaffold008 rebuild transcript 1380501 1382324 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; gene_name "PINX1"; annotation "Pin2-interacting protein X1"; Pfam "[G-patch]"; KO "K11135"; similar_genes "PINX1_RAT(e-value:6.3e-17;bit-score:85.0)"; Scaffold008 rebuild exon 1380501 1380573 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; Scaffold008 rebuild exon 1380677 1380799 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; Scaffold008 rebuild exon 1380941 1381139 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; Scaffold008 rebuild exon 1381227 1381347 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; Scaffold008 rebuild exon 1381427 1381817 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; Scaffold008 rebuild exon 1381906 1382324 . + . gene_id "RvY_13187"; transcript_id "RvY_13187.1"; Scaffold008 rebuild transcript 1384292 1386192 . + . gene_id "RvY_13188"; transcript_id "RvY_13188.1"; gene_name "NGFR"; annotation "nerve growth factor receptor (TNFR superfamily, member 16)"; Pfam "[TNFR_c6] TNFR/NGFR cysteine-rich region"; CDD "Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers."; KO "K02583"; Scaffold008 rebuild exon 1384292 1384509 . + . gene_id "RvY_13188"; transcript_id "RvY_13188.1"; Scaffold008 rebuild exon 1384623 1384867 . + . gene_id "RvY_13188"; transcript_id "RvY_13188.1"; Scaffold008 rebuild exon 1385060 1385260 . + . gene_id "RvY_13188"; transcript_id "RvY_13188.1"; Scaffold008 rebuild exon 1385786 1386192 . + . gene_id "RvY_13188"; transcript_id "RvY_13188.1"; Scaffold008 rebuild transcript 1385958 1386161 . - . gene_id "RvY_13189"; transcript_id "RvY_13189.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1385958 1386161 . - . gene_id "RvY_13189"; transcript_id "RvY_13189.1"; Scaffold008 rebuild transcript 1386362 1390707 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; gene_name "WDHD1"; annotation "chromosome transmission fidelity protein 4"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11274"; similar_genes "WDHD1_XENLA(e-value:1.7e-08;bit-score:57.0)"; Scaffold008 rebuild exon 1386362 1387211 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1387280 1387488 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1387697 1387898 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1387961 1388249 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1388557 1388920 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1388987 1389135 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1389214 1389510 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1389571 1389999 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1390080 1390365 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1390448 1390556 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild exon 1390637 1390707 . - . gene_id "RvY_13190"; transcript_id "RvY_13190.1"; Scaffold008 rebuild transcript 1391319 1391675 . - . gene_id "RvY_13191"; transcript_id "RvY_13191.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1391319 1391546 . - . gene_id "RvY_13191"; transcript_id "RvY_13191.1"; Scaffold008 rebuild exon 1391649 1391675 . - . gene_id "RvY_13191"; transcript_id "RvY_13191.1"; Scaffold008 rebuild transcript 1391703 1393194 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1391703 1392003 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild exon 1392086 1392208 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild exon 1392277 1392333 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild exon 1392403 1392565 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild exon 1392652 1392856 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild exon 1392987 1393033 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild exon 1393134 1393194 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.1"; Scaffold008 rebuild transcript 1392082 1393194 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1392082 1392208 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; Scaffold008 rebuild exon 1392277 1392333 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; Scaffold008 rebuild exon 1392403 1392565 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; Scaffold008 rebuild exon 1392652 1392856 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; Scaffold008 rebuild exon 1392987 1393033 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; Scaffold008 rebuild exon 1393134 1393194 . - . gene_id "RvY_13192"; transcript_id "RvY_13192.2"; Scaffold008 rebuild transcript 1393357 1394142 . + . gene_id "RvY_13193"; transcript_id "RvY_13193.1"; gene_name "MoaD"; annotation "hypothetical protein."; Pfam "[ThiS] ThiS family"; CDD "MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the Scaffold008 rebuild exon 1393357 1393410 . + . gene_id "RvY_13193"; transcript_id "RvY_13193.1"; Scaffold008 rebuild exon 1393601 1393932 . + . gene_id "RvY_13193"; transcript_id "RvY_13193.1"; Scaffold008 rebuild exon 1394010 1394142 . + . gene_id "RvY_13193"; transcript_id "RvY_13193.1"; Scaffold008 rebuild transcript 1394227 1394949 . + . gene_id "RvY_13194"; transcript_id "RvY_13194.1"; gene_name "moaE"; annotation "molybdenum cofactor biosynthesis protein E"; Pfam "[MoaE] MoaE protein"; CDD "MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits."; KO "K03635"; Scaffold008 rebuild exon 1394227 1394495 . + . gene_id "RvY_13194"; transcript_id "RvY_13194.1"; Scaffold008 rebuild exon 1394567 1394690 . + . gene_id "RvY_13194"; transcript_id "RvY_13194.1"; Scaffold008 rebuild exon 1394827 1394949 . + . gene_id "RvY_13194"; transcript_id "RvY_13194.1"; Scaffold008 rebuild transcript 1394615 1396183 . - . gene_id "RvY_13195"; transcript_id "RvY_13195.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1394615 1394676 . - . gene_id "RvY_13195"; transcript_id "RvY_13195.1"; Scaffold008 rebuild exon 1395286 1396183 . - . gene_id "RvY_13195"; transcript_id "RvY_13195.1"; Scaffold008 rebuild transcript 1396935 1398805 . + . gene_id "RvY_13196"; transcript_id "RvY_13196.1"; gene_name "ASCH_ASC-1_like"; annotation "hypothetical protein."; Pfam "[zf-C2HC5] Putative zinc finger motif, C2HC5-type"; CDD "ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery."; similar_genes "TRIP4_MOUSE(e-value:7.2e-16;bit-score:82.0)"; Scaffold008 rebuild exon 1396935 1397382 . + . gene_id "RvY_13196"; transcript_id "RvY_13196.1"; Scaffold008 rebuild exon 1397526 1397972 . + . gene_id "RvY_13196"; transcript_id "RvY_13196.1"; Scaffold008 rebuild exon 1398035 1398396 . + . gene_id "RvY_13196"; transcript_id "RvY_13196.1"; Scaffold008 rebuild exon 1398476 1398805 . + . gene_id "RvY_13196"; transcript_id "RvY_13196.1"; Scaffold008 rebuild transcript 1399366 1399787 . + . gene_id "RvY_13197"; transcript_id "RvY_13197.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1399366 1399583 . + . gene_id "RvY_13197"; transcript_id "RvY_13197.1"; Scaffold008 rebuild exon 1399673 1399787 . + . gene_id "RvY_13197"; transcript_id "RvY_13197.1"; Scaffold008 rebuild transcript 1399896 1401464 . - . gene_id "RvY_13198"; transcript_id "RvY_13198.1"; annotation "hypothetical protein."; Pfam "[Tektin] Tektin family"; Scaffold008 rebuild exon 1399896 1400252 . - . gene_id "RvY_13198"; transcript_id "RvY_13198.1"; Scaffold008 rebuild exon 1400311 1400533 . - . gene_id "RvY_13198"; transcript_id "RvY_13198.1"; Scaffold008 rebuild exon 1400600 1400743 . - . gene_id "RvY_13198"; transcript_id "RvY_13198.1"; Scaffold008 rebuild exon 1400836 1401133 . - . gene_id "RvY_13198"; transcript_id "RvY_13198.1"; Scaffold008 rebuild exon 1401212 1401464 . - . gene_id "RvY_13198"; transcript_id "RvY_13198.1"; Scaffold008 rebuild transcript 1401554 1403481 . - . gene_id "RvY_13199"; transcript_id "RvY_13199.1"; gene_name "PSMD5"; annotation "26S proteasome non-ATPase regulatory subunit 5"; Pfam "[Proteasom_PSMB] Proteasome non-ATPase 26S subunit"; KO "K06692"; Scaffold008 rebuild exon 1401554 1402350 . - . gene_id "RvY_13199"; transcript_id "RvY_13199.1"; Scaffold008 rebuild exon 1402563 1403481 . - . gene_id "RvY_13199"; transcript_id "RvY_13199.1"; Scaffold008 rebuild transcript 1404327 1405993 . - . gene_id "RvY_13200"; transcript_id "RvY_13200.1"; gene_name "DEDDh"; annotation "hypothetical protein."; Pfam "[Ric8] Guanine nucleotide exchange factor synembryn|[RNase_T] Exonuclease"; CDD "DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the Scaffold008 rebuild exon 1404327 1404575 . - . gene_id "RvY_13200"; transcript_id "RvY_13200.1"; Scaffold008 rebuild exon 1404650 1405130 . - . gene_id "RvY_13200"; transcript_id "RvY_13200.1"; Scaffold008 rebuild exon 1405448 1405863 . - . gene_id "RvY_13200"; transcript_id "RvY_13200.1"; Scaffold008 rebuild exon 1405955 1405993 . - . gene_id "RvY_13200"; transcript_id "RvY_13200.1"; Scaffold008 rebuild transcript 1408858 1416255 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; gene_name "DEDDh"; annotation "hypothetical protein."; Pfam "[DUF1917]|[RNase_T] Exonuclease"; CDD "DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the Scaffold008 rebuild exon 1408858 1409831 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; Scaffold008 rebuild exon 1410081 1410733 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; Scaffold008 rebuild exon 1410824 1411010 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; Scaffold008 rebuild exon 1415642 1415741 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; Scaffold008 rebuild exon 1415836 1416098 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; Scaffold008 rebuild exon 1416195 1416255 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.1"; Scaffold008 rebuild transcript 1408858 1416255 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; gene_name "DEDDh"; annotation "hypothetical protein."; Pfam "[DUF1917]|[RNase_T] Exonuclease"; CDD "DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the Scaffold008 rebuild exon 1408858 1409831 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild exon 1410081 1410733 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild exon 1410824 1411010 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild exon 1415642 1415741 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild exon 1415866 1415993 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild exon 1416057 1416098 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild exon 1416195 1416255 . - . gene_id "RvY_13201"; transcript_id "RvY_13201.2"; Scaffold008 rebuild transcript 1415222 1419562 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; gene_name "FGFR1"; annotation "putative Fibroblast growth factor receptor 3"; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer."; EC "EC2.7.10.1"; KO "K04362"; similar_genes "FGFR3_HUMAN(e-value:9.5e-35;bit-score:145.0)"; Scaffold008 rebuild exon 1415222 1415330 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1415748 1416407 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1416592 1416776 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1416874 1416956 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1417058 1417116 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1417351 1417899 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1418266 1418367 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1418443 1418657 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1418729 1418851 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1418912 1418982 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1419060 1419200 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1419271 1419364 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild exon 1419440 1419562 . + . gene_id "RvY_13202"; transcript_id "RvY_13202.1"; Scaffold008 rebuild transcript 1420558 1421065 . + . gene_id "RvY_13203"; transcript_id "RvY_13203.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1420558 1420800 . + . gene_id "RvY_13203"; transcript_id "RvY_13203.1"; Scaffold008 rebuild exon 1420952 1421065 . + . gene_id "RvY_13203"; transcript_id "RvY_13203.1"; Scaffold008 rebuild transcript 1422154 1422375 . - . gene_id "RvY_13204"; transcript_id "RvY_13204.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1422154 1422375 . - . gene_id "RvY_13204"; transcript_id "RvY_13204.1"; Scaffold008 rebuild transcript 1423007 1426360 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; gene_name "PDCD8"; annotation "putative Apoptosis-inducing factor 1, mitochondrial"; Pfam "[Pyr_redox] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[Pyr_redox_3] Pyridine nucleotide-disulphide oxidoreductase|[DAO] FAD dependent oxidoreductase|[NAD_binding_9] FAD-NAD(P)-binding"; EC "EC1.-.-.-"; KO "K04727"; similar_genes "AIFM1_HUMAN(e-value:4.1e-48;bit-score:189.0)"; Scaffold008 rebuild exon 1423007 1423165 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1423232 1423384 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1423461 1423599 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1423678 1423751 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1423813 1423881 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1423994 1424134 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1424195 1424286 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1424389 1424605 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1424676 1424752 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1424830 1425005 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1425099 1425226 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1425305 1425730 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1425984 1426216 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild exon 1426288 1426360 . - . gene_id "RvY_13205"; transcript_id "RvY_13205.1"; Scaffold008 rebuild transcript 1426414 1426728 . + . gene_id "RvY_13206"; transcript_id "RvY_13206.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1426414 1426728 . + . gene_id "RvY_13206"; transcript_id "RvY_13206.1"; Scaffold008 rebuild transcript 1426935 1428181 . + . gene_id "RvY_13207"; transcript_id "RvY_13207.1"; gene_name "ksgA"; annotation "putative Dimethyladenosine transferase 1, mitochondrial"; Pfam "[RrnaAD] Ribosomal RNA adenine dimethylase"; CDD "dimethyladenosine transferase; Reviewed"; EC "EC2.1.1.-"; KO "K15266"; similar_genes "TFB1M_RAT(e-value:9.6e-37;bit-score:151.0)"; Scaffold008 rebuild exon 1426935 1427604 . + . gene_id "RvY_13207"; transcript_id "RvY_13207.1"; Scaffold008 rebuild exon 1427773 1427926 . + . gene_id "RvY_13207"; transcript_id "RvY_13207.1"; Scaffold008 rebuild exon 1428007 1428181 . + . gene_id "RvY_13207"; transcript_id "RvY_13207.1"; Scaffold008 rebuild transcript 1428548 1433364 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; annotation "hypothetical protein."; similar_genes "C2D2A_HUMAN(e-value:1.8e-10;bit-score:64.0)"; Scaffold008 rebuild exon 1428548 1428742 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1428805 1429179 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1429261 1429518 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1429594 1429683 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1429750 1430115 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1430178 1430471 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1430534 1430842 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1430914 1431245 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1431349 1431558 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1431757 1432552 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild exon 1432618 1433364 . - . gene_id "RvY_13208"; transcript_id "RvY_13208.1"; Scaffold008 rebuild transcript 1434830 1435153 . + . gene_id "RvY_13209"; transcript_id "RvY_13209.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1434830 1435153 . + . gene_id "RvY_13209"; transcript_id "RvY_13209.1"; Scaffold008 rebuild transcript 1435575 1435982 . - . gene_id "RvY_13210"; transcript_id "RvY_13210.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1435575 1435982 . - . gene_id "RvY_13210"; transcript_id "RvY_13210.1"; Scaffold008 rebuild transcript 1435686 1436000 . + . gene_id "RvY_13211"; transcript_id "RvY_13211.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1435686 1436000 . + . gene_id "RvY_13211"; transcript_id "RvY_13211.1"; Scaffold008 rebuild transcript 1436121 1436901 . + . gene_id "RvY_13212"; transcript_id "RvY_13212.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1436121 1436219 . + . gene_id "RvY_13212"; transcript_id "RvY_13212.1"; Scaffold008 rebuild exon 1436554 1436901 . + . gene_id "RvY_13212"; transcript_id "RvY_13212.1"; Scaffold008 rebuild transcript 1440228 1441419 . + . gene_id "RvY_13213"; transcript_id "RvY_13213.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; Scaffold008 rebuild exon 1440228 1440311 . + . gene_id "RvY_13213"; transcript_id "RvY_13213.1"; Scaffold008 rebuild exon 1440383 1440532 . + . gene_id "RvY_13213"; transcript_id "RvY_13213.1"; Scaffold008 rebuild exon 1440625 1440807 . + . gene_id "RvY_13213"; transcript_id "RvY_13213.1"; Scaffold008 rebuild exon 1440876 1441118 . + . gene_id "RvY_13213"; transcript_id "RvY_13213.1"; Scaffold008 rebuild exon 1441315 1441419 . + . gene_id "RvY_13213"; transcript_id "RvY_13213.1"; Scaffold008 rebuild transcript 1441712 1443049 . + . gene_id "RvY_13214"; transcript_id "RvY_13214.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GCY3E_DROME(e-value:2.1e-13;bit-score:74.0)"; Scaffold008 rebuild exon 1441712 1441971 . + . gene_id "RvY_13214"; transcript_id "RvY_13214.1"; Scaffold008 rebuild exon 1442195 1442269 . + . gene_id "RvY_13214"; transcript_id "RvY_13214.1"; Scaffold008 rebuild exon 1442538 1442685 . + . gene_id "RvY_13214"; transcript_id "RvY_13214.1"; Scaffold008 rebuild exon 1442764 1442923 . + . gene_id "RvY_13214"; transcript_id "RvY_13214.1"; Scaffold008 rebuild exon 1442997 1443049 . + . gene_id "RvY_13214"; transcript_id "RvY_13214.1"; Scaffold008 rebuild transcript 1443137 1443375 . + . gene_id "RvY_13215"; transcript_id "RvY_13215.1"; gene_name "CHD"; annotation "hypothetical protein."; Pfam "[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide."; Scaffold008 rebuild exon 1443137 1443247 . + . gene_id "RvY_13215"; transcript_id "RvY_13215.1"; Scaffold008 rebuild exon 1443331 1443375 . + . gene_id "RvY_13215"; transcript_id "RvY_13215.1"; Scaffold008 rebuild transcript 1443799 1444492 . - . gene_id "RvY_13216"; transcript_id "RvY_13216.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1443799 1444132 . - . gene_id "RvY_13216"; transcript_id "RvY_13216.1"; Scaffold008 rebuild exon 1444320 1444492 . - . gene_id "RvY_13216"; transcript_id "RvY_13216.1"; Scaffold008 rebuild transcript 1446739 1451033 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; gene_name "2A1704"; annotation "putative Solute carrier family 15 member 2"; Pfam "[PTR2] POT family"; CDD "Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)."; KO "K14206"; similar_genes "S15A2_MOUSE(e-value:2.3e-29;bit-score:127.0)"; Scaffold008 rebuild exon 1446739 1446810 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1446882 1446963 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1447078 1447219 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1447281 1447367 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1447449 1447548 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1447769 1447859 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1447923 1448003 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1448115 1448197 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1448331 1448408 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1448486 1448602 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1448697 1448786 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1448861 1448909 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1449043 1449163 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1449234 1449315 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1449405 1449542 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1449604 1449777 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1449866 1450098 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1450172 1450355 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1450441 1450515 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1450604 1450711 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild exon 1450824 1451033 . + . gene_id "RvY_13217"; transcript_id "RvY_13217.1"; Scaffold008 rebuild transcript 1451257 1452767 . - . gene_id "RvY_13218"; transcript_id "RvY_13218.1"; gene_name "PPP3R"; annotation "protein phosphatase 3, regulatory subunit"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; KO "K06268"; similar_genes "CHP1_MOUSE(e-value:1.1e-20;bit-score:98.0)"; Scaffold008 rebuild exon 1451257 1451391 . - . gene_id "RvY_13218"; transcript_id "RvY_13218.1"; Scaffold008 rebuild exon 1451872 1452085 . - . gene_id "RvY_13218"; transcript_id "RvY_13218.1"; Scaffold008 rebuild exon 1452183 1452263 . - . gene_id "RvY_13218"; transcript_id "RvY_13218.1"; Scaffold008 rebuild exon 1452413 1452485 . - . gene_id "RvY_13218"; transcript_id "RvY_13218.1"; Scaffold008 rebuild exon 1452701 1452767 . - . gene_id "RvY_13218"; transcript_id "RvY_13218.1"; Scaffold008 rebuild transcript 1455270 1457340 . - . gene_id "RvY_13219"; transcript_id "RvY_13219.1"; gene_name "AKT"; annotation "RAC serine/threonine-protein kinase"; Pfam "[PH]|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis."; EC "EC2.7.11.1"; KO "K04456"; similar_genes "AKT1_DROME(e-value:1.0e-146;bit-score:516.0)"; Scaffold008 rebuild exon 1455270 1455737 . - . gene_id "RvY_13219"; transcript_id "RvY_13219.1"; Scaffold008 rebuild exon 1455980 1456286 . - . gene_id "RvY_13219"; transcript_id "RvY_13219.1"; Scaffold008 rebuild exon 1456352 1456820 . - . gene_id "RvY_13219"; transcript_id "RvY_13219.1"; Scaffold008 rebuild exon 1457094 1457340 . - . gene_id "RvY_13219"; transcript_id "RvY_13219.1"; Scaffold008 rebuild transcript 1457685 1458769 . + . gene_id "RvY_13220"; transcript_id "RvY_13220.1"; gene_name "COG0062"; annotation "hypothetical protein."; Pfam "[YjeF_N] YjeF-related protein N-terminus"; CDD "Uncharacterized conserved protein [Function unknown]"; similar_genes "AIBP_HUMAN(e-value:6.7e-25;bit-score:112.0)"; Scaffold008 rebuild exon 1457685 1457833 . + . gene_id "RvY_13220"; transcript_id "RvY_13220.1"; Scaffold008 rebuild exon 1457895 1458108 . + . gene_id "RvY_13220"; transcript_id "RvY_13220.1"; Scaffold008 rebuild exon 1458252 1458510 . + . gene_id "RvY_13220"; transcript_id "RvY_13220.1"; Scaffold008 rebuild exon 1458567 1458769 . + . gene_id "RvY_13220"; transcript_id "RvY_13220.1"; Scaffold008 rebuild transcript 1459383 1463019 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; gene_name "RhoGAP"; annotation "hypothetical protein."; Pfam "[RhoGAP]"; CDD "RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, Scaffold008 rebuild exon 1459383 1459547 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1459865 1460266 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1460609 1460826 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1460892 1461111 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1461363 1461537 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1461690 1461769 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1461892 1461988 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1462649 1462812 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild exon 1462909 1463019 . - . gene_id "RvY_13221"; transcript_id "RvY_13221.1"; Scaffold008 rebuild transcript 1463960 1464364 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.1"; annotation "hypothetical protein."; Pfam "[Tmemb_14] Transmembrane proteins 14C"; Scaffold008 rebuild exon 1463960 1464234 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.1"; Scaffold008 rebuild exon 1464316 1464364 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.1"; Scaffold008 rebuild transcript 1464192 1465295 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.2"; annotation "hypothetical protein."; Pfam "[Tmemb_14] Transmembrane proteins 14C"; Scaffold008 rebuild exon 1464192 1464234 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.2"; Scaffold008 rebuild exon 1464316 1464403 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.2"; Scaffold008 rebuild exon 1464490 1464591 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.2"; Scaffold008 rebuild exon 1465226 1465295 . - . gene_id "RvY_13222"; transcript_id "RvY_13222.2"; Scaffold008 rebuild transcript 1465976 1467437 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; product "protein phosphatase 1 regulatory subunit 8"; gene_name "PPP1R8"; annotation "protein phosphatase 1 regulatory subunit 8 | putative Nuclear inhibitor of protein phosphatase 1"; Pfam "[FHA]"; CDD "Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation)."; EC "EC3.1.4.-"; KO "K13216"; similar_genes "PP1R8_HUMAN(e-value:2.7e-30;bit-score:130.0)"; Scaffold008 rebuild exon 1465976 1466001 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; Scaffold008 rebuild exon 1466305 1466365 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; Scaffold008 rebuild exon 1466428 1466581 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; Scaffold008 rebuild exon 1466651 1466847 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; Scaffold008 rebuild exon 1466907 1467107 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; Scaffold008 rebuild exon 1467180 1467437 . + . gene_id "RvY_13223"; transcript_id "RvY_13223.1"; Scaffold008 rebuild transcript 1468557 1476074 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; gene_name "CLECT"; annotation "putative Integumentary mucin C.1"; Pfam "[Lectin_C] Lectin C-type domain|[Sushi] Sushi domain (SCR repeat)"; CDD "C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules."; similar_genes "MUC1_XENLA(e-value:2.7e-28;bit-score:123.0)"; Scaffold008 rebuild exon 1468557 1468638 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1468726 1468902 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1469914 1470141 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1470222 1470311 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1470451 1470576 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1470833 1471011 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1471164 1471284 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1471754 1471912 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1472039 1472215 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1472485 1472658 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1472754 1472936 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1473246 1474517 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1474725 1474803 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1474916 1475322 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild exon 1476022 1476074 . + . gene_id "RvY_13224"; transcript_id "RvY_13224.1"; Scaffold008 rebuild transcript 1477276 1486368 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; gene_name "(1)CUB"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain|[CUB]"; CDD "(1)CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold008 rebuild exon 1477276 1477429 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1478353 1478434 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1478852 1478953 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1480516 1480692 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1480798 1481025 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1481100 1481222 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1481818 1481921 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1481998 1482286 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild exon 1486266 1486368 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.1"; Scaffold008 rebuild transcript 1477276 1481005 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.2"; gene_name "(1)CUB"; annotation "hypothetical protein."; Pfam "[Gal_Lectin] Galactose binding lectin domain|[CUB]"; CDD "(1)CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast."; Scaffold008 rebuild exon 1477276 1477429 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.2"; Scaffold008 rebuild exon 1478353 1478434 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.2"; Scaffold008 rebuild exon 1478852 1478953 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.2"; Scaffold008 rebuild exon 1480516 1480692 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.2"; Scaffold008 rebuild exon 1480798 1481005 . - . gene_id "RvY_13225"; transcript_id "RvY_13225.2"; Scaffold008 rebuild transcript 1488782 1492218 . + . gene_id "RvY_13226"; transcript_id "RvY_13226.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold008 rebuild exon 1488782 1489325 . + . gene_id "RvY_13226"; transcript_id "RvY_13226.1"; Scaffold008 rebuild exon 1491364 1491490 . + . gene_id "RvY_13226"; transcript_id "RvY_13226.1"; Scaffold008 rebuild exon 1491572 1491756 . + . gene_id "RvY_13226"; transcript_id "RvY_13226.1"; Scaffold008 rebuild exon 1491866 1492218 . + . gene_id "RvY_13226"; transcript_id "RvY_13226.1"; Scaffold008 rebuild transcript 1492435 1495065 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; gene_name "DHDH"; annotation "dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP) [EC:1.3.1.20 1.1.1.179]"; Pfam "[GFO_IDH_MocA] Oxidoreductase family, NAD-binding Rossmann fold"; CDD "Predicted dehydrogenases and related proteins [General function prediction only]"; EC "EC1.1.1.179|EC1.3.1.20"; KO "K00078"; Scaffold008 rebuild exon 1492435 1492553 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1492641 1492791 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1492891 1493060 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1493329 1493584 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1493648 1493811 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1493876 1493987 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1494888 1494992 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild exon 1495060 1495065 . - . gene_id "RvY_13227"; transcript_id "RvY_13227.1"; Scaffold008 rebuild transcript 1495956 1496834 . - . gene_id "RvY_13228"; transcript_id "RvY_13228.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1495956 1496094 . - . gene_id "RvY_13228"; transcript_id "RvY_13228.1"; Scaffold008 rebuild exon 1496156 1496425 . - . gene_id "RvY_13228"; transcript_id "RvY_13228.1"; Scaffold008 rebuild exon 1496485 1496834 . - . gene_id "RvY_13228"; transcript_id "RvY_13228.1"; Scaffold008 rebuild transcript 1498139 1499011 . + . gene_id "RvY_13229"; transcript_id "RvY_13229.1"; gene_name "cysRS"; annotation "hypothetical protein."; Pfam "[DUF297] TM1410 hypothetical-related protein"; CDD "possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PMID:11333988 but challenged by PMID:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases."; Scaffold008 rebuild exon 1498139 1499011 . + . gene_id "RvY_13229"; transcript_id "RvY_13229.1"; Scaffold008 rebuild transcript 1499161 1500550 . - . gene_id "RvY_13230"; transcript_id "RvY_13230.1"; annotation "hypothetical protein."; Pfam "[Glyco_transf_92] Glycosyltransferase family 92"; Scaffold008 rebuild exon 1499161 1499618 . - . gene_id "RvY_13230"; transcript_id "RvY_13230.1"; Scaffold008 rebuild exon 1499686 1500550 . - . gene_id "RvY_13230"; transcript_id "RvY_13230.1"; Scaffold008 rebuild transcript 1499558 1500550 . - . gene_id "RvY_13230"; transcript_id "RvY_13230.2"; annotation "hypothetical protein."; Pfam "[Glyco_transf_92] Glycosyltransferase family 92"; Scaffold008 rebuild exon 1499558 1500550 . - . gene_id "RvY_13230"; transcript_id "RvY_13230.2"; Scaffold008 rebuild transcript 1502230 1503314 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; annotation "hypothetical protein."; Pfam "[Fip1] Fip1 motif"; KO "(1)K14405"; similar_genes "(1)FIP1_PONAB(e-value:6.3e-17;bit-score:85.0)"; Scaffold008 rebuild exon 1502230 1502245 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild exon 1502315 1502422 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild exon 1502484 1502624 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild exon 1502689 1502794 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild exon 1502871 1502968 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild exon 1503032 1503151 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild exon 1503241 1503314 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.1"; Scaffold008 rebuild transcript 1501451 1502336 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.2"; annotation "hypothetical protein."; Pfam "[Fip1] Fip1 motif"; KO "(1)K14405"; similar_genes "(1)FIP1_PONAB(e-value:6.3e-17;bit-score:85.0)"; Scaffold008 rebuild exon 1501451 1501641 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.2"; Scaffold008 rebuild exon 1501717 1501888 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.2"; Scaffold008 rebuild exon 1502040 1502146 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.2"; Scaffold008 rebuild exon 1502225 1502336 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.2"; Scaffold008 rebuild transcript 1501451 1502150 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.3"; annotation "hypothetical protein."; Pfam "[Fip1] Fip1 motif"; KO "(1)K14405"; similar_genes "(1)FIP1_PONAB(e-value:6.3e-17;bit-score:85.0)"; Scaffold008 rebuild exon 1501451 1501641 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.3"; Scaffold008 rebuild exon 1501717 1501888 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.3"; Scaffold008 rebuild exon 1502040 1502150 . + . gene_id "RvY_13231"; transcript_id "RvY_13231.3"; Scaffold008 rebuild transcript 1503471 1503665 . - . gene_id "RvY_13232"; transcript_id "RvY_13232.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1503471 1503665 . - . gene_id "RvY_13232"; transcript_id "RvY_13232.1"; Scaffold008 rebuild transcript 1503711 1504279 . - . gene_id "RvY_13233"; transcript_id "RvY_13233.1"; annotation "hypothetical protein."; Pfam "[Ost4] Oligosaccaryltransferase"; Scaffold008 rebuild exon 1503711 1503901 . - . gene_id "RvY_13233"; transcript_id "RvY_13233.1"; Scaffold008 rebuild exon 1503959 1504019 . - . gene_id "RvY_13233"; transcript_id "RvY_13233.1"; Scaffold008 rebuild exon 1504214 1504279 . - . gene_id "RvY_13233"; transcript_id "RvY_13233.1"; Scaffold008 rebuild transcript 1504614 1504820 . + . gene_id "RvY_13234"; transcript_id "RvY_13234.1"; gene_name "SEC61G"; annotation "putative Protein transport protein Sec61 subunit gamma"; Pfam "[SecE] SecE/Sec61-gamma subunits of protein translocation complex"; KO "K07342"; similar_genes "S61G1_GRYOR(e-value:4.0e-27;bit-score:119.0)"; Scaffold008 rebuild exon 1504614 1504820 . + . gene_id "RvY_13234"; transcript_id "RvY_13234.1"; Scaffold008 rebuild transcript 1508956 1509168 . + . gene_id "RvY_13235"; transcript_id "RvY_13235.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1508956 1509168 . + . gene_id "RvY_13235"; transcript_id "RvY_13235.1"; Scaffold008 rebuild transcript 1510683 1511024 . + . gene_id "RvY_13236"; transcript_id "RvY_13236.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1510683 1511024 . + . gene_id "RvY_13236"; transcript_id "RvY_13236.1"; Scaffold008 rebuild transcript 1519417 1524474 . + . gene_id "RvY_13237"; transcript_id "RvY_13237.1"; gene_name "SOX4_11_12"; annotation "putative Transcription factor Sox-11-B"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif."; KO "K09268"; similar_genes "SX11B_XENLA(e-value:1.2e-30;bit-score:131.0)"; Scaffold008 rebuild exon 1519417 1519696 . + . gene_id "RvY_13237"; transcript_id "RvY_13237.1"; Scaffold008 rebuild exon 1521271 1521454 . + . gene_id "RvY_13237"; transcript_id "RvY_13237.1"; Scaffold008 rebuild exon 1522768 1523335 . + . gene_id "RvY_13237"; transcript_id "RvY_13237.1"; Scaffold008 rebuild exon 1523690 1524101 . + . gene_id "RvY_13237"; transcript_id "RvY_13237.1"; Scaffold008 rebuild exon 1524362 1524474 . + . gene_id "RvY_13237"; transcript_id "RvY_13237.1"; Scaffold008 rebuild transcript 1534459 1535368 . + . gene_id "RvY_13238"; transcript_id "RvY_13238.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1534459 1534574 . + . gene_id "RvY_13238"; transcript_id "RvY_13238.1"; Scaffold008 rebuild exon 1535233 1535368 . + . gene_id "RvY_13238"; transcript_id "RvY_13238.1"; Scaffold008 rebuild transcript 1535457 1535810 . + . gene_id "RvY_13239"; transcript_id "RvY_13239.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1535457 1535810 . + . gene_id "RvY_13239"; transcript_id "RvY_13239.1"; Scaffold008 rebuild transcript 1543369 1548122 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; gene_name "(1)CAPN7(2)CysPc"; annotation "Calpain-7"; Pfam "[Peptidase_C2] Calpain family cysteine protease|[Calpain_III] Calpain large subunit, domain III|[MIT] MIT (microtubule interacting and transport) domain"; CDD "Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit)."; EC "EC3.4.22.-"; KO "(1)K08576"; similar_genes "CAN7_MOUSE(e-value:1.1e-58;bit-score:224.0)"; Scaffold008 rebuild exon 1543369 1543600 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1543874 1544019 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1544079 1544290 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1544389 1544706 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1544943 1545315 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1545543 1545689 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1546203 1546248 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1546386 1546433 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1546540 1546752 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1546911 1546997 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1547106 1547461 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1547549 1547715 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild exon 1547900 1548122 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.1"; Scaffold008 rebuild transcript 1543870 1548122 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; gene_name "(1)CAPN7(2)CysPc"; annotation "Calpain-7"; Pfam "[Peptidase_C2] Calpain family cysteine protease|[Calpain_III] Calpain large subunit, domain III|[MIT] MIT (microtubule interacting and transport) domain"; CDD "Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit)."; EC "EC3.4.22.-"; KO "(1)K08576"; similar_genes "CAN7_MOUSE(e-value:1.1e-58;bit-score:224.0)"; Scaffold008 rebuild exon 1543870 1544019 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1544079 1544290 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1544389 1544706 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1544943 1545315 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1545543 1545689 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1546203 1546248 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1546386 1546433 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1546540 1546752 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1546911 1546997 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1547106 1547461 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1547549 1547715 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild exon 1547900 1548122 . - . gene_id "RvY_13240"; transcript_id "RvY_13240.2"; Scaffold008 rebuild transcript 1549035 1549890 . - . gene_id "RvY_13241"; transcript_id "RvY_13241.1"; gene_name "NPC2"; annotation "Niemann-Pick C2 protein"; Pfam "[E1_DerP2_DerF2] ML domain"; CDD "Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family."; KO "K13443"; Scaffold008 rebuild exon 1549035 1549124 . - . gene_id "RvY_13241"; transcript_id "RvY_13241.1"; Scaffold008 rebuild exon 1549238 1549413 . - . gene_id "RvY_13241"; transcript_id "RvY_13241.1"; Scaffold008 rebuild exon 1549514 1549657 . - . gene_id "RvY_13241"; transcript_id "RvY_13241.1"; Scaffold008 rebuild exon 1549815 1549890 . - . gene_id "RvY_13241"; transcript_id "RvY_13241.1"; Scaffold008 rebuild transcript 1550525 1551920 . - . gene_id "RvY_13242"; transcript_id "RvY_13242.1"; gene_name "GH18_chitolectin_chitotriosidase"; annotation "hypothetical protein."; Pfam "[LysM]|[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold008 rebuild exon 1550525 1550663 . - . gene_id "RvY_13242"; transcript_id "RvY_13242.1"; Scaffold008 rebuild exon 1550753 1551195 . - . gene_id "RvY_13242"; transcript_id "RvY_13242.1"; Scaffold008 rebuild exon 1551327 1551635 . - . gene_id "RvY_13242"; transcript_id "RvY_13242.1"; Scaffold008 rebuild exon 1551720 1551843 . - . gene_id "RvY_13242"; transcript_id "RvY_13242.1"; Scaffold008 rebuild exon 1551913 1551920 . - . gene_id "RvY_13242"; transcript_id "RvY_13242.1"; Scaffold008 rebuild transcript 1551949 1552311 . + . gene_id "RvY_13243"; transcript_id "RvY_13243.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1551949 1552311 . + . gene_id "RvY_13243"; transcript_id "RvY_13243.1"; Scaffold008 rebuild transcript 1553263 1555034 . - . gene_id "RvY_13244"; transcript_id "RvY_13244.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1553263 1553591 . - . gene_id "RvY_13244"; transcript_id "RvY_13244.1"; Scaffold008 rebuild exon 1554550 1554947 . - . gene_id "RvY_13244"; transcript_id "RvY_13244.1"; Scaffold008 rebuild exon 1555021 1555034 . - . gene_id "RvY_13244"; transcript_id "RvY_13244.1"; Scaffold008 rebuild transcript 1556006 1556395 . - . gene_id "RvY_13245"; transcript_id "RvY_13245.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1556006 1556395 . - . gene_id "RvY_13245"; transcript_id "RvY_13245.1"; Scaffold008 rebuild transcript 1556717 1558698 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; gene_name "GH18_chitolectin_chitotriosidase"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold008 rebuild exon 1556717 1556943 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild exon 1557011 1557491 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild exon 1557561 1557693 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild exon 1557788 1557906 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild exon 1558017 1558267 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild exon 1558345 1558518 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild exon 1558581 1558698 . - . gene_id "RvY_13246"; transcript_id "RvY_13246.1"; Scaffold008 rebuild transcript 1559287 1559912 . + . gene_id "RvY_13247"; transcript_id "RvY_13247.1"; annotation "hypothetical protein."; Pfam "[Tmemb_14] Transmembrane proteins 14C"; similar_genes "TM14C_MOUSE(e-value:8.5e-21;bit-score:98.0)"; Scaffold008 rebuild exon 1559287 1559368 . + . gene_id "RvY_13247"; transcript_id "RvY_13247.1"; Scaffold008 rebuild exon 1559507 1559632 . + . gene_id "RvY_13247"; transcript_id "RvY_13247.1"; Scaffold008 rebuild exon 1559713 1559800 . + . gene_id "RvY_13247"; transcript_id "RvY_13247.1"; Scaffold008 rebuild exon 1559867 1559912 . + . gene_id "RvY_13247"; transcript_id "RvY_13247.1"; Scaffold008 rebuild transcript 1559999 1561632 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14830"; similar_genes "PK1IP_XENLA(e-value:8.2e-17;bit-score:85.0)"; Scaffold008 rebuild exon 1559999 1560337 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; Scaffold008 rebuild exon 1560424 1560693 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; Scaffold008 rebuild exon 1560757 1560967 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; Scaffold008 rebuild exon 1561112 1561232 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; Scaffold008 rebuild exon 1561314 1561473 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; Scaffold008 rebuild exon 1561552 1561632 . - . gene_id "RvY_13248"; transcript_id "RvY_13248.1"; Scaffold008 rebuild transcript 1562026 1564250 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; annotation "hypothetical protein."; Pfam "[Dor1] Dor1-like family"; Scaffold008 rebuild exon 1562026 1562271 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; Scaffold008 rebuild exon 1562399 1562662 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; Scaffold008 rebuild exon 1562729 1562971 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; Scaffold008 rebuild exon 1563038 1563232 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; Scaffold008 rebuild exon 1563386 1563585 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; Scaffold008 rebuild exon 1563692 1564250 . + . gene_id "RvY_13249"; transcript_id "RvY_13249.1"; Scaffold008 rebuild transcript 1566179 1567662 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(1)[Sugar_tr] Sugar (and other) transporter"; Scaffold008 rebuild exon 1566179 1566745 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.1"; Scaffold008 rebuild exon 1566807 1567311 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.1"; Scaffold008 rebuild exon 1567376 1567662 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.1"; Scaffold008 rebuild transcript 1566179 1567265 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.2"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|(1)[Sugar_tr] Sugar (and other) transporter"; Scaffold008 rebuild exon 1566179 1566745 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.2"; Scaffold008 rebuild exon 1566807 1567265 . - . gene_id "RvY_13250"; transcript_id "RvY_13250.2"; Scaffold008 rebuild transcript 1568534 1570263 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; gene_name "pdxK"; annotation "pyridoxine kinase [EC:2.7.1.35]"; Pfam "[PfkB] pfkB family carbohydrate kinase|[Phos_pyr_kin] Phosphomethylpyrimidine kinase"; CDD "Pyridoxal kinase plays a key role in the synthesis of the Scaffold008 rebuild exon 1568534 1568652 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1568729 1568914 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1569098 1569249 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1569375 1569460 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1569545 1569579 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1569654 1569737 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1569814 1569918 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1569987 1570041 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild exon 1570111 1570263 . - . gene_id "RvY_13251"; transcript_id "RvY_13251.1"; Scaffold008 rebuild transcript 1571265 1576640 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; gene_name "NPEPPS"; annotation "Puromycin-sensitive aminopeptidase"; Pfam "[DUF3358]|[Peptidase_MA_2] Peptidase MA superfamily|[Peptidase_M1] Peptidase family M1"; CDD "Aminopeptidase N [Amino acid transport and metabolism]"; EC "EC3.4.11.-"; KO "K08776"; similar_genes "PSA_HUMAN(e-value:1.5e-60;bit-score:230.0)"; Scaffold008 rebuild exon 1571265 1571396 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1571517 1571786 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1571854 1571987 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1572054 1572201 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1572268 1572375 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1572448 1572648 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1572927 1573177 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1573268 1573411 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1573482 1573602 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1573664 1573819 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1573948 1574169 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1574387 1574521 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1574625 1574850 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1575048 1575190 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1575258 1575422 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1575686 1575923 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild exon 1576537 1576640 . + . gene_id "RvY_13252"; transcript_id "RvY_13252.1"; Scaffold008 rebuild transcript 1576674 1576901 . - . gene_id "RvY_13253"; transcript_id "RvY_13253.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1576674 1576901 . - . gene_id "RvY_13253"; transcript_id "RvY_13253.1"; Scaffold008 rebuild transcript 1577914 1579793 . + . gene_id "RvY_13254"; transcript_id "RvY_13254.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1577914 1578994 . + . gene_id "RvY_13254"; transcript_id "RvY_13254.1"; Scaffold008 rebuild exon 1579072 1579494 . + . gene_id "RvY_13254"; transcript_id "RvY_13254.1"; Scaffold008 rebuild exon 1579726 1579793 . + . gene_id "RvY_13254"; transcript_id "RvY_13254.1"; Scaffold008 rebuild transcript 1579851 1580908 . + . gene_id "RvY_13255"; transcript_id "RvY_13255.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1579851 1580202 . + . gene_id "RvY_13255"; transcript_id "RvY_13255.1"; Scaffold008 rebuild exon 1580289 1580908 . + . gene_id "RvY_13255"; transcript_id "RvY_13255.1"; Scaffold008 rebuild transcript 1582258 1582452 . + . gene_id "RvY_13256"; transcript_id "RvY_13256.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1582258 1582452 . + . gene_id "RvY_13256"; transcript_id "RvY_13256.1"; Scaffold008 rebuild transcript 1583368 1584802 . - . gene_id "RvY_13257"; transcript_id "RvY_13257.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1583368 1583509 . - . gene_id "RvY_13257"; transcript_id "RvY_13257.1"; Scaffold008 rebuild exon 1584134 1584549 . - . gene_id "RvY_13257"; transcript_id "RvY_13257.1"; Scaffold008 rebuild exon 1584713 1584802 . - . gene_id "RvY_13257"; transcript_id "RvY_13257.1"; Scaffold008 rebuild transcript 1590613 1593366 . + . gene_id "RvY_13258"; transcript_id "RvY_13258.1"; gene_name "xanthine_xdhB"; annotation "hypothetical protein."; Pfam "[Ald_Xan_dh_C2] Molybdopterin-binding domain of aldehyde dehydrogenase"; CDD "xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase."; Scaffold008 rebuild exon 1590613 1590807 . + . gene_id "RvY_13258"; transcript_id "RvY_13258.1"; Scaffold008 rebuild exon 1592251 1592539 . + . gene_id "RvY_13258"; transcript_id "RvY_13258.1"; Scaffold008 rebuild exon 1593212 1593366 . + . gene_id "RvY_13258"; transcript_id "RvY_13258.1"; Scaffold008 rebuild transcript 1593468 1593719 . + . gene_id "RvY_13259"; transcript_id "RvY_13259.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1593468 1593573 . + . gene_id "RvY_13259"; transcript_id "RvY_13259.1"; Scaffold008 rebuild exon 1593691 1593719 . + . gene_id "RvY_13259"; transcript_id "RvY_13259.1"; Scaffold008 rebuild transcript 1594806 1600977 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; gene_name "(1,2)mam_aldehyde_ox(3)xanthine_xdhB"; annotation "hypothetical protein."; Pfam "[Ald_Xan_dh_C2] Molybdopterin-binding domain of aldehyde dehydrogenase|[Ald_Xan_dh_C] Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain|[CO_deh_flav_C] CO dehydrogenase flavoprotein C-terminal domain|(1,2)[FAD_binding_5] FAD binding domain in molybdopterin dehydrogenase|(1,2)[Fer2_2] [2Fe-2S] binding domain"; CDD "(1,2)aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.(3)xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase."; EC "EC1.17.1.4"; similar_genes "(1,2)XDH_RAT(e-value:8.1e-15;bit-score:78.0)(3)XDH_BOVIN(e-value:1.0e-08;bit-score:58.0)"; Scaffold008 rebuild exon 1594806 1594884 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1594951 1595114 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1595201 1595358 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1595497 1595579 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1595985 1596064 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1596179 1596616 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1596688 1596927 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1596987 1597103 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1597222 1597668 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1597770 1597923 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1598047 1598276 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1598386 1598495 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1598569 1598673 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1598784 1598923 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1599005 1599061 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1599139 1599219 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1599295 1599680 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1599756 1599884 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1599985 1600115 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1600220 1600368 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1600448 1600837 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild exon 1600904 1600977 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.1"; Scaffold008 rebuild transcript 1594806 1600379 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; gene_name "(1,2)mam_aldehyde_ox(3)xanthine_xdhB"; annotation "hypothetical protein."; Pfam "[Ald_Xan_dh_C2] Molybdopterin-binding domain of aldehyde dehydrogenase|[Ald_Xan_dh_C] Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain|[CO_deh_flav_C] CO dehydrogenase flavoprotein C-terminal domain|(1,2)[FAD_binding_5] FAD binding domain in molybdopterin dehydrogenase|(1,2)[Fer2_2] [2Fe-2S] binding domain"; CDD "(1,2)aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.(3)xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase."; EC "EC1.17.1.4"; similar_genes "(1,2)XDH_RAT(e-value:8.1e-15;bit-score:78.0)(3)XDH_BOVIN(e-value:1.0e-08;bit-score:58.0)"; Scaffold008 rebuild exon 1594806 1594884 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1594951 1595114 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1595201 1595358 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1595497 1595579 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1595985 1596064 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1596179 1596616 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1596688 1596927 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1596987 1597103 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1597222 1597668 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1597770 1597923 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1598047 1598276 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1598386 1598495 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1598569 1598673 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1598784 1598923 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1599005 1599061 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1599139 1599219 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1599295 1599680 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1599756 1599884 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1599985 1600115 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild exon 1600220 1600379 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.2"; Scaffold008 rebuild transcript 1596766 1600977 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; gene_name "(1,2)mam_aldehyde_ox(3)xanthine_xdhB"; annotation "hypothetical protein."; Pfam "[Ald_Xan_dh_C2] Molybdopterin-binding domain of aldehyde dehydrogenase|[Ald_Xan_dh_C] Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain|[CO_deh_flav_C] CO dehydrogenase flavoprotein C-terminal domain|(1,2)[FAD_binding_5] FAD binding domain in molybdopterin dehydrogenase|(1,2)[Fer2_2] [2Fe-2S] binding domain"; CDD "(1,2)aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.(3)xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase."; EC "EC1.17.1.4"; similar_genes "(1,2)XDH_RAT(e-value:8.1e-15;bit-score:78.0)(3)XDH_BOVIN(e-value:1.0e-08;bit-score:58.0)"; Scaffold008 rebuild exon 1596766 1596927 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1596987 1597103 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1597222 1597668 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1597770 1597923 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1598047 1598276 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1598386 1598495 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1598569 1598673 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1598784 1598923 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1599005 1599061 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1599139 1599219 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1599295 1599680 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1599756 1599884 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1599985 1600115 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1600220 1600368 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1600448 1600651 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1600730 1600837 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild exon 1600904 1600977 . + . gene_id "RvY_13260"; transcript_id "RvY_13260.3"; Scaffold008 rebuild transcript 1601634 1607530 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; gene_name "K01769"; annotation "Olfactory guanylyl cyclase GC-D"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[HNOBA] Heme NO binding associated|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; KO "K01769"; similar_genes "GUC2D_RAT(e-value:8.3e-87;bit-score:317.0)"; Scaffold008 rebuild exon 1601634 1601754 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1601828 1602063 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1602167 1602201 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1602532 1602721 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1602805 1602886 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1602985 1603095 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1603159 1603299 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1603665 1603836 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1604232 1604829 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1605435 1605693 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1606426 1606864 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild exon 1607323 1607530 . - . gene_id "RvY_13261"; transcript_id "RvY_13261.1"; Scaffold008 rebuild transcript 1612166 1612823 . + . gene_id "RvY_13262"; transcript_id "RvY_13262.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1612166 1612382 . + . gene_id "RvY_13262"; transcript_id "RvY_13262.1"; Scaffold008 rebuild exon 1612509 1612661 . + . gene_id "RvY_13262"; transcript_id "RvY_13262.1"; Scaffold008 rebuild exon 1612723 1612823 . + . gene_id "RvY_13262"; transcript_id "RvY_13262.1"; Scaffold008 rebuild transcript 1613271 1616701 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; gene_name "Aldo_ket_red"; annotation "hypothetical protein."; Pfam "[Aldo_ket_red] Aldo/keto reductase family"; CDD "Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others."; Scaffold008 rebuild exon 1613271 1613458 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1613613 1613719 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1613903 1614048 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1614224 1614394 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1614491 1614621 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1614686 1614920 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1615005 1615090 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1615175 1615261 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild exon 1616569 1616701 . + . gene_id "RvY_13263"; transcript_id "RvY_13263.1"; Scaffold008 rebuild transcript 1618508 1619041 . + . gene_id "RvY_13264"; transcript_id "RvY_13264.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1618508 1619041 . + . gene_id "RvY_13264"; transcript_id "RvY_13264.1"; Scaffold008 rebuild transcript 1619847 1624432 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; gene_name "2A060601"; annotation "Sterol regulatory element-binding protein cleavage-activating protein"; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation"; CDD "Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis."; similar_genes "SCAP_HUMAN(e-value:1.3e-53;bit-score:207.0)"; Scaffold008 rebuild exon 1619847 1619980 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1620054 1620225 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1620293 1620459 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1620524 1620661 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1620725 1620807 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1620874 1621161 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1621240 1621366 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1621432 1621544 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1621694 1621788 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1621951 1622664 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1623007 1623750 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1623820 1624122 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild exon 1624184 1624432 . + . gene_id "RvY_13265"; transcript_id "RvY_13265.1"; Scaffold008 rebuild transcript 1624916 1626193 . - . gene_id "RvY_13266"; transcript_id "RvY_13266.1"; gene_name "kgd"; annotation "hypothetical protein."; CDD "alpha-ketoglutarate decarboxylase; Reviewed"; Scaffold008 rebuild exon 1624916 1625614 . - . gene_id "RvY_13266"; transcript_id "RvY_13266.1"; Scaffold008 rebuild exon 1625680 1625771 . - . gene_id "RvY_13266"; transcript_id "RvY_13266.1"; Scaffold008 rebuild exon 1626166 1626193 . - . gene_id "RvY_13266"; transcript_id "RvY_13266.1"; Scaffold008 rebuild transcript 1626205 1626390 . - . gene_id "RvY_13267"; transcript_id "RvY_13267.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1626205 1626390 . - . gene_id "RvY_13267"; transcript_id "RvY_13267.1"; Scaffold008 rebuild transcript 1626508 1627676 . - . gene_id "RvY_13268"; transcript_id "RvY_13268.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1626508 1627016 . - . gene_id "RvY_13268"; transcript_id "RvY_13268.1"; Scaffold008 rebuild exon 1627179 1627383 . - . gene_id "RvY_13268"; transcript_id "RvY_13268.1"; Scaffold008 rebuild exon 1627452 1627676 . - . gene_id "RvY_13268"; transcript_id "RvY_13268.1"; Scaffold008 rebuild transcript 1628270 1628779 . + . gene_id "RvY_13269"; transcript_id "RvY_13269.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1628270 1628779 . + . gene_id "RvY_13269"; transcript_id "RvY_13269.1"; Scaffold008 rebuild transcript 1629203 1632454 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; gene_name "SOAT"; annotation "putative Sterol O-acyltransferase 2"; Pfam "[MBOAT] MBOAT, membrane-bound O-acyltransferase family"; CDD "Acyl-CoA cholesterol acyltransferase [Lipid metabolism]"; EC "EC2.3.1.26"; KO "K00637"; similar_genes "SOAT2_HUMAN(e-value:2.6e-43;bit-score:173.0)"; Scaffold008 rebuild exon 1629203 1629453 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1629707 1629842 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1629929 1630045 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1630114 1630248 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1630347 1630625 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1630889 1631016 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1631116 1631267 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1631535 1631642 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1631716 1631915 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1631997 1632076 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild exon 1632289 1632454 . - . gene_id "RvY_13270"; transcript_id "RvY_13270.1"; Scaffold008 rebuild transcript 1633512 1634833 . - . gene_id "RvY_13271"; transcript_id "RvY_13271.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1633512 1634283 . - . gene_id "RvY_13271"; transcript_id "RvY_13271.1"; Scaffold008 rebuild exon 1634594 1634675 . - . gene_id "RvY_13271"; transcript_id "RvY_13271.1"; Scaffold008 rebuild exon 1634752 1634833 . - . gene_id "RvY_13271"; transcript_id "RvY_13271.1"; Scaffold008 rebuild transcript 1635386 1637652 . - . gene_id "RvY_13272"; transcript_id "RvY_13272.1"; gene_name "COG1161"; annotation "putative Guanine nucleotide-binding protein-like 1"; Pfam "[FeoB_N] Ferrous iron transport protein B|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "Predicted GTPases [General function prediction only]"; similar_genes "GNL1_HUMAN(e-value:4.9e-38;bit-score:155.0)"; Scaffold008 rebuild exon 1635386 1636230 . - . gene_id "RvY_13272"; transcript_id "RvY_13272.1"; Scaffold008 rebuild exon 1636509 1636923 . - . gene_id "RvY_13272"; transcript_id "RvY_13272.1"; Scaffold008 rebuild exon 1636986 1637255 . - . gene_id "RvY_13272"; transcript_id "RvY_13272.1"; Scaffold008 rebuild exon 1637398 1637652 . - . gene_id "RvY_13272"; transcript_id "RvY_13272.1"; Scaffold008 rebuild transcript 1638381 1639049 . + . gene_id "RvY_13273"; transcript_id "RvY_13273.1"; gene_name "Man-6-P_recep"; annotation "hypothetical protein."; Pfam "[ATG27] Autophagy-related protein 27|[Man-6-P_recep] Mannose-6-phosphate receptor"; CDD "Cation-dependent mannose-6-phosphate receptor."; Scaffold008 rebuild exon 1638381 1638559 . + . gene_id "RvY_13273"; transcript_id "RvY_13273.1"; Scaffold008 rebuild exon 1638671 1638797 . + . gene_id "RvY_13273"; transcript_id "RvY_13273.1"; Scaffold008 rebuild exon 1638990 1639049 . + . gene_id "RvY_13273"; transcript_id "RvY_13273.1"; Scaffold008 rebuild transcript 1643714 1644058 . - . gene_id "RvY_13274"; transcript_id "RvY_13274.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1643714 1644058 . - . gene_id "RvY_13274"; transcript_id "RvY_13274.1"; Scaffold008 rebuild transcript 1643835 1644164 . + . gene_id "RvY_13275"; transcript_id "RvY_13275.1"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold008 rebuild exon 1643835 1644164 . + . gene_id "RvY_13275"; transcript_id "RvY_13275.1"; Scaffold008 rebuild transcript 1646119 1647113 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1646119 1646307 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; Scaffold008 rebuild exon 1646365 1646415 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; Scaffold008 rebuild exon 1646562 1646699 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; Scaffold008 rebuild exon 1646780 1646857 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; Scaffold008 rebuild exon 1646952 1646990 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; Scaffold008 rebuild exon 1647111 1647113 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.1"; Scaffold008 rebuild transcript 1647075 1647446 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1647075 1647446 . - . gene_id "RvY_13276"; transcript_id "RvY_13276.2"; Scaffold008 rebuild transcript 1647786 1648172 . - . gene_id "RvY_13277"; transcript_id "RvY_13277.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1647786 1648172 . - . gene_id "RvY_13277"; transcript_id "RvY_13277.1"; Scaffold008 rebuild transcript 1651282 1652340 . + . gene_id "RvY_13278"; transcript_id "RvY_13278.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1651282 1651420 . + . gene_id "RvY_13278"; transcript_id "RvY_13278.1"; Scaffold008 rebuild exon 1652300 1652340 . + . gene_id "RvY_13278"; transcript_id "RvY_13278.1"; Scaffold008 rebuild transcript 1653311 1653599 . - . gene_id "RvY_13279"; transcript_id "RvY_13279.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1653311 1653352 . - . gene_id "RvY_13279"; transcript_id "RvY_13279.1"; Scaffold008 rebuild exon 1653438 1653599 . - . gene_id "RvY_13279"; transcript_id "RvY_13279.1"; Scaffold008 rebuild transcript 1653649 1654947 . + . gene_id "RvY_13280"; transcript_id "RvY_13280.1"; gene_name "L_HGMIC_fpl"; annotation "putative Lipoma HMGIC fusion partner-like 3 protein"; Pfam "[L_HGMIC_fpl] Lipoma HMGIC fusion partner-like protein"; CDD "Lipoma HMGIC fusion partner-like protein. This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains in this entry. In certain instances, eg in LHFPL5, mutations cause deafness in humans and hypospadias, and LHFPL1 is transcribed in six liver tumour cell lines."; similar_genes "LHPL3_HUMAN(e-value:9.0e-46;bit-score:181.0)"; Scaffold008 rebuild exon 1653649 1653829 . + . gene_id "RvY_13280"; transcript_id "RvY_13280.1"; Scaffold008 rebuild exon 1653895 1653972 . + . gene_id "RvY_13280"; transcript_id "RvY_13280.1"; Scaffold008 rebuild exon 1654047 1654208 . + . gene_id "RvY_13280"; transcript_id "RvY_13280.1"; Scaffold008 rebuild exon 1654399 1654650 . + . gene_id "RvY_13280"; transcript_id "RvY_13280.1"; Scaffold008 rebuild exon 1654751 1654947 . + . gene_id "RvY_13280"; transcript_id "RvY_13280.1"; Scaffold008 rebuild transcript 1655415 1658061 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; annotation "hypothetical protein."; Pfam "[GH3] GH3 auxin-responsive promoter"; Scaffold008 rebuild exon 1655415 1655486 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1655573 1655725 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1655796 1656118 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1656182 1656251 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1656328 1656500 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1656577 1656687 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1656751 1657153 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1657356 1657873 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild exon 1657956 1658061 . - . gene_id "RvY_13281"; transcript_id "RvY_13281.1"; Scaffold008 rebuild transcript 1658349 1659713 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1658349 1658426 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; Scaffold008 rebuild exon 1658493 1658649 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; Scaffold008 rebuild exon 1658757 1658901 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; Scaffold008 rebuild exon 1659036 1659156 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; Scaffold008 rebuild exon 1659248 1659370 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; Scaffold008 rebuild exon 1659594 1659713 . - . gene_id "RvY_13282"; transcript_id "RvY_13282.1"; Scaffold008 rebuild transcript 1659753 1660749 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1659753 1659897 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; Scaffold008 rebuild exon 1659972 1660054 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; Scaffold008 rebuild exon 1660132 1660195 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; Scaffold008 rebuild exon 1660331 1660424 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; Scaffold008 rebuild exon 1660539 1660632 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; Scaffold008 rebuild exon 1660708 1660749 . - . gene_id "RvY_13283"; transcript_id "RvY_13283.1"; Scaffold008 rebuild transcript 1661380 1662529 . - . gene_id "RvY_13284"; transcript_id "RvY_13284.1"; gene_name "DER1"; annotation "Derlin-2"; Pfam "[DER1] Der1-like family"; CDD "Der1-like family. The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.)."; KO "K13989"; similar_genes "DERL2_PONAB(e-value:2.1e-87;bit-score:319.0)"; Scaffold008 rebuild exon 1661380 1661512 . - . gene_id "RvY_13284"; transcript_id "RvY_13284.1"; Scaffold008 rebuild exon 1661575 1661665 . - . gene_id "RvY_13284"; transcript_id "RvY_13284.1"; Scaffold008 rebuild exon 1661747 1661942 . - . gene_id "RvY_13284"; transcript_id "RvY_13284.1"; Scaffold008 rebuild exon 1662143 1662376 . - . gene_id "RvY_13284"; transcript_id "RvY_13284.1"; Scaffold008 rebuild exon 1662437 1662529 . - . gene_id "RvY_13284"; transcript_id "RvY_13284.1"; Scaffold008 rebuild transcript 1662968 1663454 . + . gene_id "RvY_13285"; transcript_id "RvY_13285.1"; gene_name "SRP9"; annotation "signal recognition particle subunit SRP9"; Pfam "[SRP9-21] Signal recognition particle 9 kDa protein (SRP9)"; KO "K03109"; Scaffold008 rebuild exon 1662968 1663039 . + . gene_id "RvY_13285"; transcript_id "RvY_13285.1"; Scaffold008 rebuild exon 1663149 1663217 . + . gene_id "RvY_13285"; transcript_id "RvY_13285.1"; Scaffold008 rebuild exon 1663368 1663454 . + . gene_id "RvY_13285"; transcript_id "RvY_13285.1"; Scaffold008 rebuild transcript 1663609 1664292 . - . gene_id "RvY_13286"; transcript_id "RvY_13286.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1663609 1663949 . - . gene_id "RvY_13286"; transcript_id "RvY_13286.1"; Scaffold008 rebuild exon 1664163 1664292 . - . gene_id "RvY_13286"; transcript_id "RvY_13286.1"; Scaffold008 rebuild transcript 1664431 1665983 . + . gene_id "RvY_13287"; transcript_id "RvY_13287.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1664431 1664641 . + . gene_id "RvY_13287"; transcript_id "RvY_13287.1"; Scaffold008 rebuild exon 1664875 1664954 . + . gene_id "RvY_13287"; transcript_id "RvY_13287.1"; Scaffold008 rebuild exon 1665594 1665983 . + . gene_id "RvY_13287"; transcript_id "RvY_13287.1"; Scaffold008 rebuild transcript 1666397 1667507 . - . gene_id "RvY_13288"; transcript_id "RvY_13288.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1666397 1666728 . - . gene_id "RvY_13288"; transcript_id "RvY_13288.1"; Scaffold008 rebuild exon 1667051 1667507 . - . gene_id "RvY_13288"; transcript_id "RvY_13288.1"; Scaffold008 rebuild transcript 1669414 1677214 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; gene_name "ABCC1"; annotation "Canalicular multispecific organic anion transporter 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[AAA_25] AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; KO "K05665"; similar_genes "MRP2_RAT(e-value:1.1e-92;bit-score:337.0)"; Scaffold008 rebuild exon 1669414 1669525 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1669602 1669796 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1669859 1670050 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1670294 1670812 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1671074 1671273 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1671341 1671409 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1671476 1671717 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1671788 1672085 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1672498 1672930 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1673118 1673161 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1673230 1673451 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1674053 1674361 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1674431 1674649 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1674860 1675290 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1675382 1675515 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1675795 1675944 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1676009 1676322 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1676395 1676682 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1676765 1676941 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild exon 1677107 1677214 . - . gene_id "RvY_13289"; transcript_id "RvY_13289.1"; Scaffold008 rebuild transcript 1680188 1680487 . + . gene_id "RvY_13290"; transcript_id "RvY_13290.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1680188 1680487 . + . gene_id "RvY_13290"; transcript_id "RvY_13290.1"; Scaffold008 rebuild transcript 1680618 1681262 . + . gene_id "RvY_13291"; transcript_id "RvY_13291.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1680618 1681262 . + . gene_id "RvY_13291"; transcript_id "RvY_13291.1"; Scaffold008 rebuild transcript 1681497 1682750 . - . gene_id "RvY_13292"; transcript_id "RvY_13292.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold008 rebuild exon 1681497 1682750 . - . gene_id "RvY_13292"; transcript_id "RvY_13292.1"; Scaffold008 rebuild transcript 1683266 1700422 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1683266 1683556 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1683616 1683732 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1683805 1683886 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1683980 1684101 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1684179 1684256 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1684324 1684524 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1684588 1684729 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1684916 1685229 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1685342 1685454 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1685661 1686018 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1686207 1686459 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1686612 1686872 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1687030 1687405 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1687616 1687952 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1688084 1689154 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1689321 1689603 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1689851 1690246 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1690488 1690707 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1690767 1691037 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1691452 1691778 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1691972 1692283 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1692486 1692909 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1693173 1693471 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1694019 1694493 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1694652 1695073 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1695839 1696075 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1696253 1696683 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1696902 1697193 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1697348 1697574 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1697796 1698072 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1698132 1698345 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1698425 1698549 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1698883 1699464 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1699574 1699744 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1699822 1700025 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild exon 1700222 1700422 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.1"; Scaffold008 rebuild transcript 1683266 1700422 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1683266 1683365 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1683438 1683556 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1683616 1683732 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1683805 1683886 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1683980 1684101 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1684179 1684256 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1684324 1684524 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1684588 1684729 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1684916 1685229 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1685342 1685454 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1685661 1686018 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1686207 1686459 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1686612 1686872 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1687030 1687405 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1687616 1687952 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1688084 1689154 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1689321 1689603 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1689851 1690246 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1690488 1690707 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1690767 1691037 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1691452 1691778 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1691972 1692283 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1692486 1692909 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1693173 1693471 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1694019 1694493 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1694652 1695073 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1695839 1696075 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1696253 1696683 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1696902 1697193 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1697348 1697574 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1697796 1698072 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1698132 1698345 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1698425 1698549 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1698883 1699464 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1699574 1699744 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1699822 1700025 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild exon 1700222 1700422 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.2"; Scaffold008 rebuild transcript 1683266 1700422 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1683266 1683365 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1683438 1683556 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1683616 1683732 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1683805 1683886 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1683980 1684101 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1684179 1684256 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1684324 1684524 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1684588 1684729 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1684916 1685151 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1685342 1685454 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1685661 1686018 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1686207 1686459 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1686612 1686872 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1687030 1687405 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1687616 1687952 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1688084 1689154 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1689321 1689603 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1689851 1690246 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1690488 1690707 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1690767 1691037 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1691452 1691778 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1691972 1692283 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1692486 1692909 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1693173 1693471 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1694019 1694493 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1694652 1695073 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1695839 1696075 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1696253 1696683 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1696902 1697193 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1697348 1697574 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1697796 1698072 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1698132 1698345 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1698425 1698549 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1698883 1699464 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1699574 1699744 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1699822 1700025 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild exon 1700222 1700422 . + . gene_id "RvY_13293"; transcript_id "RvY_13293.3"; Scaffold008 rebuild transcript 1701927 1703767 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; gene_name "B_lectin"; annotation "hypothetical protein."; Pfam "[B_lectin] D-mannose binding lectin"; CDD "Bulb-type mannose-specific lectin."; Scaffold008 rebuild exon 1701927 1701939 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1702033 1702112 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1702193 1702243 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1702322 1702367 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1702563 1702606 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1702719 1702811 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1702902 1702941 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1703110 1703189 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1703284 1703333 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1703405 1703465 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1703554 1703631 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild exon 1703717 1703767 . + . gene_id "RvY_13294"; transcript_id "RvY_13294.1"; Scaffold008 rebuild transcript 1707782 1710632 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; gene_name "K00261"; annotation "Glutamate dehydrogenase, mitochondrial"; Pfam "[ELFV_dehydrog_N] Glu/Leu/Phe/Val dehydrogenase, dimerisation domain|[ELFV_dehydrog] Glutamate/Leucine/Phenylalanine/Valine dehydrogenase"; CDD "Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]"; EC "EC1.4.1.3"; KO "K00261"; similar_genes "DHE3_DROME(e-value:3.0e-165;bit-score:578.0)"; Scaffold008 rebuild exon 1707782 1707901 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1708285 1708347 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1708436 1708732 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1708807 1708947 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1709214 1709380 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1709442 1709722 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1709779 1710037 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild exon 1710236 1710632 . - . gene_id "RvY_13295"; transcript_id "RvY_13295.1"; Scaffold008 rebuild transcript 1711892 1712644 . + . gene_id "RvY_13296"; transcript_id "RvY_13296.1"; gene_name "RT_DIRS1"; annotation "hypothetical protein."; CDD "RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase."; Scaffold008 rebuild exon 1711892 1712644 . + . gene_id "RvY_13296"; transcript_id "RvY_13296.1"; Scaffold008 rebuild transcript 1715988 1719132 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; gene_name "DHX35"; annotation "putative Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[OB_NTP_bind] Oligonucleotide/oligosaccharide-binding (OB)-fold|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K13117"; similar_genes "DHX16_DICDI(e-value:7.1e-50;bit-score:195.0)"; Scaffold008 rebuild exon 1715988 1716129 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; Scaffold008 rebuild exon 1716205 1716385 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; Scaffold008 rebuild exon 1716661 1717092 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; Scaffold008 rebuild exon 1717397 1718444 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; Scaffold008 rebuild exon 1718622 1718929 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; Scaffold008 rebuild exon 1719093 1719132 . - . gene_id "RvY_13297"; transcript_id "RvY_13297.1"; Scaffold008 rebuild transcript 1716180 1716389 . + . gene_id "RvY_13298"; transcript_id "RvY_13298.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1716180 1716389 . + . gene_id "RvY_13298"; transcript_id "RvY_13298.1"; Scaffold008 rebuild transcript 1719595 1721909 . + . gene_id "RvY_13299"; transcript_id "RvY_13299.1"; gene_name "MBTPS2"; annotation "S2P endopeptidase [EC:3.4.24.85]"; Pfam "[Peptidase_M50] Peptidase family M50"; CDD "Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain."; EC "EC3.4.24.85"; KO "K07765"; Scaffold008 rebuild exon 1719595 1720086 . + . gene_id "RvY_13299"; transcript_id "RvY_13299.1"; Scaffold008 rebuild exon 1720379 1720560 . + . gene_id "RvY_13299"; transcript_id "RvY_13299.1"; Scaffold008 rebuild exon 1720632 1720870 . + . gene_id "RvY_13299"; transcript_id "RvY_13299.1"; Scaffold008 rebuild exon 1721182 1721909 . + . gene_id "RvY_13299"; transcript_id "RvY_13299.1"; Scaffold008 rebuild transcript 1720750 1721330 . - . gene_id "RvY_13300"; transcript_id "RvY_13300.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1720750 1720874 . - . gene_id "RvY_13300"; transcript_id "RvY_13300.1"; Scaffold008 rebuild exon 1721186 1721330 . - . gene_id "RvY_13300"; transcript_id "RvY_13300.1"; Scaffold008 rebuild transcript 1723516 1723916 . + . gene_id "RvY_13301"; transcript_id "RvY_13301.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1723516 1723649 . + . gene_id "RvY_13301"; transcript_id "RvY_13301.1"; Scaffold008 rebuild exon 1723700 1723916 . + . gene_id "RvY_13301"; transcript_id "RvY_13301.1"; Scaffold008 rebuild transcript 1723691 1724664 . - . gene_id "RvY_13302"; transcript_id "RvY_13302.1"; gene_name "THI80"; annotation "thiamine pyrophosphokinase [EC:2.7.6.2]"; Pfam "[TPK_catalytic] Thiamin pyrophosphokinase, catalytic domain|[TPK_B1_binding] Thiamin pyrophosphokinase, vitamin B1 binding domain"; CDD "thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the Scaffold008 rebuild exon 1723691 1724071 . - . gene_id "RvY_13302"; transcript_id "RvY_13302.1"; Scaffold008 rebuild exon 1724227 1724664 . - . gene_id "RvY_13302"; transcript_id "RvY_13302.1"; Scaffold008 rebuild transcript 1726498 1731045 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; gene_name "INTS3"; annotation "integrator complex subunit 3"; Pfam "[DUF2356] Conserved protein (DUF2356)"; KO "K13140"; Scaffold008 rebuild exon 1726498 1726908 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1727184 1727612 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1727687 1727774 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1727870 1727967 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1728235 1728732 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1728818 1728927 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1729269 1729777 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1729962 1730127 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1730219 1730398 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1730481 1730602 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1730668 1730752 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild exon 1730826 1731045 . + . gene_id "RvY_13303"; transcript_id "RvY_13303.1"; Scaffold008 rebuild transcript 1731575 1732229 . + . gene_id "RvY_13304"; transcript_id "RvY_13304.1"; gene_name "ZnMc_astacin_like"; annotation "hypothetical protein."; Pfam "[Astacin] Astacin (Peptidase family M12A)"; CDD "Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the Scaffold008 rebuild exon 1731575 1731779 . + . gene_id "RvY_13304"; transcript_id "RvY_13304.1"; Scaffold008 rebuild exon 1731865 1732038 . + . gene_id "RvY_13304"; transcript_id "RvY_13304.1"; Scaffold008 rebuild exon 1732120 1732229 . + . gene_id "RvY_13304"; transcript_id "RvY_13304.1"; Scaffold008 rebuild transcript 1732404 1733183 . + . gene_id "RvY_13305"; transcript_id "RvY_13305.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1732404 1732735 . + . gene_id "RvY_13305"; transcript_id "RvY_13305.1"; Scaffold008 rebuild exon 1732865 1733183 . + . gene_id "RvY_13305"; transcript_id "RvY_13305.1"; Scaffold008 rebuild transcript 1733336 1734720 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14962"; similar_genes "WDR82_CHICK(e-value:4.7e-13;bit-score:72.0)"; Scaffold008 rebuild exon 1733336 1733611 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; Scaffold008 rebuild exon 1733673 1733828 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; Scaffold008 rebuild exon 1733898 1734117 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; Scaffold008 rebuild exon 1734176 1734242 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; Scaffold008 rebuild exon 1734374 1734471 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; Scaffold008 rebuild exon 1734536 1734720 . - . gene_id "RvY_13306"; transcript_id "RvY_13306.1"; Scaffold008 rebuild transcript 1735980 1738547 . - . gene_id "RvY_13307"; transcript_id "RvY_13307.1"; annotation "Mothers against decapentaplegic homolog 4"; Pfam "[MH2]|[MH1]"; similar_genes "SMAD4_RAT(e-value:9.9e-58;bit-score:221.0)"; Scaffold008 rebuild exon 1735980 1736285 . - . gene_id "RvY_13307"; transcript_id "RvY_13307.1"; Scaffold008 rebuild exon 1736617 1736979 . - . gene_id "RvY_13307"; transcript_id "RvY_13307.1"; Scaffold008 rebuild exon 1737323 1737567 . - . gene_id "RvY_13307"; transcript_id "RvY_13307.1"; Scaffold008 rebuild exon 1737629 1738106 . - . gene_id "RvY_13307"; transcript_id "RvY_13307.1"; Scaffold008 rebuild exon 1738272 1738547 . - . gene_id "RvY_13307"; transcript_id "RvY_13307.1"; Scaffold008 rebuild transcript 1739842 1740150 . + . gene_id "RvY_13308"; transcript_id "RvY_13308.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1739842 1740150 . + . gene_id "RvY_13308"; transcript_id "RvY_13308.1"; Scaffold008 rebuild transcript 1741916 1744739 . - . gene_id "RvY_13309"; transcript_id "RvY_13309.1"; annotation "hypothetical protein."; Pfam "[PIF1] PIF1-like helicase"; Scaffold008 rebuild exon 1741916 1742412 . - . gene_id "RvY_13309"; transcript_id "RvY_13309.1"; Scaffold008 rebuild exon 1742628 1743167 . - . gene_id "RvY_13309"; transcript_id "RvY_13309.1"; Scaffold008 rebuild exon 1743438 1743762 . - . gene_id "RvY_13309"; transcript_id "RvY_13309.1"; Scaffold008 rebuild exon 1744049 1744330 . - . gene_id "RvY_13309"; transcript_id "RvY_13309.1"; Scaffold008 rebuild exon 1744527 1744739 . - . gene_id "RvY_13309"; transcript_id "RvY_13309.1"; Scaffold008 rebuild transcript 1745225 1746340 . - . gene_id "RvY_13310"; transcript_id "RvY_13310.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1745225 1746062 . - . gene_id "RvY_13310"; transcript_id "RvY_13310.1"; Scaffold008 rebuild exon 1746234 1746340 . - . gene_id "RvY_13310"; transcript_id "RvY_13310.1"; Scaffold008 rebuild transcript 1747231 1747983 . - . gene_id "RvY_13311"; transcript_id "RvY_13311.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1747231 1747361 . - . gene_id "RvY_13311"; transcript_id "RvY_13311.1"; Scaffold008 rebuild exon 1747443 1747561 . - . gene_id "RvY_13311"; transcript_id "RvY_13311.1"; Scaffold008 rebuild exon 1747949 1747983 . - . gene_id "RvY_13311"; transcript_id "RvY_13311.1"; Scaffold008 rebuild transcript 1749560 1750308 . + . gene_id "RvY_13312"; transcript_id "RvY_13312.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1749560 1749623 . + . gene_id "RvY_13312"; transcript_id "RvY_13312.1"; Scaffold008 rebuild exon 1749722 1749862 . + . gene_id "RvY_13312"; transcript_id "RvY_13312.1"; Scaffold008 rebuild exon 1750118 1750308 . + . gene_id "RvY_13312"; transcript_id "RvY_13312.1"; Scaffold008 rebuild transcript 1758258 1759926 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold008 rebuild exon 1758258 1758422 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.1"; Scaffold008 rebuild exon 1758489 1758652 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.1"; Scaffold008 rebuild exon 1759151 1759477 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.1"; Scaffold008 rebuild exon 1759557 1759926 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.1"; Scaffold008 rebuild transcript 1759086 1759926 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.2"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold008 rebuild exon 1759086 1759477 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.2"; Scaffold008 rebuild exon 1759557 1759926 . - . gene_id "RvY_13313"; transcript_id "RvY_13313.2"; Scaffold008 rebuild transcript 1760327 1760591 . - . gene_id "RvY_13314"; transcript_id "RvY_13314.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1760327 1760390 . - . gene_id "RvY_13314"; transcript_id "RvY_13314.1"; Scaffold008 rebuild exon 1760479 1760591 . - . gene_id "RvY_13314"; transcript_id "RvY_13314.1"; Scaffold008 rebuild transcript 1762633 1763938 . + . gene_id "RvY_13315"; transcript_id "RvY_13315.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1762633 1763455 . + . gene_id "RvY_13315"; transcript_id "RvY_13315.1"; Scaffold008 rebuild exon 1763546 1763605 . + . gene_id "RvY_13315"; transcript_id "RvY_13315.1"; Scaffold008 rebuild exon 1763835 1763938 . + . gene_id "RvY_13315"; transcript_id "RvY_13315.1"; Scaffold008 rebuild transcript 1765540 1771198 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1765540 1765564 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1765624 1765784 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1765928 1766120 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1766208 1766603 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1766669 1767385 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1767456 1768034 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1768339 1768644 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1768990 1769280 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1769357 1769584 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1769650 1770078 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1770145 1770261 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1770340 1770480 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1770548 1770682 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1770743 1770901 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild exon 1771050 1771198 . + . gene_id "RvY_13316"; transcript_id "RvY_13316.1"; Scaffold008 rebuild transcript 1773050 1774918 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1773050 1773108 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.1"; Scaffold008 rebuild exon 1773287 1773364 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.1"; Scaffold008 rebuild exon 1774136 1774383 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.1"; Scaffold008 rebuild exon 1774442 1774649 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.1"; Scaffold008 rebuild exon 1774852 1774918 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.1"; Scaffold008 rebuild transcript 1772990 1774918 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1772990 1772994 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; Scaffold008 rebuild exon 1773061 1773108 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; Scaffold008 rebuild exon 1773287 1773364 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; Scaffold008 rebuild exon 1774136 1774383 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; Scaffold008 rebuild exon 1774442 1774649 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; Scaffold008 rebuild exon 1774852 1774918 . - . gene_id "RvY_13317"; transcript_id "RvY_13317.2"; Scaffold008 rebuild transcript 1775558 1775767 . + . gene_id "RvY_13318"; transcript_id "RvY_13318.1"; annotation "hypothetical protein."; Pfam "[DUF3469]"; Scaffold008 rebuild exon 1775558 1775767 . + . gene_id "RvY_13318"; transcript_id "RvY_13318.1"; Scaffold008 rebuild transcript 1775871 1776212 . - . gene_id "RvY_13319"; transcript_id "RvY_13319.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1775871 1776212 . - . gene_id "RvY_13319"; transcript_id "RvY_13319.1"; Scaffold008 rebuild transcript 1776500 1778082 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; gene_name "ARPC2"; annotation "Actin-related protein 2/3 complex subunit 2"; Pfam "[P34-Arc] Arp2/3 complex, 34 kD subunit p34-Arc"; KO "K05758"; similar_genes "ARPC2_HUMAN(e-value:4.0e-82;bit-score:302.0)"; Scaffold008 rebuild exon 1776500 1776573 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; Scaffold008 rebuild exon 1776656 1776749 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; Scaffold008 rebuild exon 1776811 1777109 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; Scaffold008 rebuild exon 1777308 1777528 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; Scaffold008 rebuild exon 1777610 1777811 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; Scaffold008 rebuild exon 1778052 1778082 . + . gene_id "RvY_13320"; transcript_id "RvY_13320.1"; Scaffold008 rebuild transcript 1778464 1779781 . - . gene_id "RvY_13321"; transcript_id "RvY_13321.1"; annotation "hypothetical protein."; Pfam "[NKAIN] Na,K-Atpase Interacting protein"; Scaffold008 rebuild exon 1778464 1779122 . - . gene_id "RvY_13321"; transcript_id "RvY_13321.1"; Scaffold008 rebuild exon 1779194 1779245 . - . gene_id "RvY_13321"; transcript_id "RvY_13321.1"; Scaffold008 rebuild exon 1779443 1779781 . - . gene_id "RvY_13321"; transcript_id "RvY_13321.1"; Scaffold008 rebuild transcript 1782623 1789700 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; gene_name "CD109"; annotation "CD109 antigen"; Pfam "[A2M_comp] A-macroglobulin complement component|[Prenyltrans_2] Prenyltransferase-like|[A2M_N_2] Alpha-2-macroglobulin family N-terminal region|[Thiol-ester_cl] Alpha-macro-globulin thiol-ester bond-forming region|[A2M_recep] A-macroglobulin receptor|[A2M_N] MG2 domain|[A2M] Alpha-2-macroglobulin family"; CDD "Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation."; KO "K06530"; similar_genes "CD109_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold008 rebuild exon 1782623 1782741 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1782956 1783193 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1783269 1783529 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1783638 1783689 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1783766 1783988 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1784070 1784184 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1784319 1784906 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1785165 1785353 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1785422 1785583 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1785855 1785965 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1786061 1786169 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1786436 1786652 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1786712 1786829 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1787174 1787666 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1787882 1788873 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1788986 1789155 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1789239 1789404 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild exon 1789485 1789700 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.1"; Scaffold008 rebuild transcript 1782623 1789700 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; gene_name "CD109"; annotation "CD109 antigen"; Pfam "[A2M_comp] A-macroglobulin complement component|[Prenyltrans_2] Prenyltransferase-like|[A2M_N_2] Alpha-2-macroglobulin family N-terminal region|[Thiol-ester_cl] Alpha-macro-globulin thiol-ester bond-forming region|[A2M_recep] A-macroglobulin receptor|[A2M_N] MG2 domain|[A2M] Alpha-2-macroglobulin family"; CDD "Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation."; KO "K06530"; similar_genes "CD109_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold008 rebuild exon 1782623 1782741 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1782956 1783193 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1783269 1783529 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1783638 1783689 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1783766 1783988 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1784070 1784184 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1784319 1784906 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1785165 1785353 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1785422 1785583 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1785855 1785965 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1786061 1786205 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1786484 1786652 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1786712 1786829 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1787174 1787666 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1787882 1788873 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1788986 1789155 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1789239 1789404 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild exon 1789485 1789700 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.2"; Scaffold008 rebuild transcript 1782623 1789700 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; gene_name "CD109"; annotation "CD109 antigen"; Pfam "[A2M_comp] A-macroglobulin complement component|[Prenyltrans_2] Prenyltransferase-like|[A2M_N_2] Alpha-2-macroglobulin family N-terminal region|[Thiol-ester_cl] Alpha-macro-globulin thiol-ester bond-forming region|[A2M_recep] A-macroglobulin receptor|[A2M_N] MG2 domain|[A2M] Alpha-2-macroglobulin family"; CDD "Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation."; KO "K06530"; similar_genes "CD109_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold008 rebuild exon 1782623 1782741 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1782956 1783193 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1783269 1783529 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1783638 1783689 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1783766 1783988 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1784070 1784184 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1784319 1784906 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1785165 1785353 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1785422 1785583 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1785855 1785965 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1786061 1786169 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1786484 1786652 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1786712 1786829 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1787174 1787666 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1787882 1788873 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1788986 1789155 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1789239 1789404 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild exon 1789485 1789700 . + . gene_id "RvY_13322"; transcript_id "RvY_13322.3"; Scaffold008 rebuild transcript 1790820 1792321 . - . gene_id "RvY_13323"; transcript_id "RvY_13323.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold008 rebuild exon 1790820 1791295 . - . gene_id "RvY_13323"; transcript_id "RvY_13323.1"; Scaffold008 rebuild exon 1791360 1791418 . - . gene_id "RvY_13323"; transcript_id "RvY_13323.1"; Scaffold008 rebuild exon 1791904 1792008 . - . gene_id "RvY_13323"; transcript_id "RvY_13323.1"; Scaffold008 rebuild exon 1792074 1792321 . - . gene_id "RvY_13323"; transcript_id "RvY_13323.1"; Scaffold008 rebuild transcript 1791435 1791647 . + . gene_id "RvY_13324"; transcript_id "RvY_13324.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1791435 1791647 . + . gene_id "RvY_13324"; transcript_id "RvY_13324.1"; Scaffold008 rebuild transcript 1795834 1797399 . - . gene_id "RvY_13325"; transcript_id "RvY_13325.1"; gene_name "PRK12678"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "transcription termination factor Rho; Provisional"; Scaffold008 rebuild exon 1795834 1796693 . - . gene_id "RvY_13325"; transcript_id "RvY_13325.1"; Scaffold008 rebuild exon 1796762 1796820 . - . gene_id "RvY_13325"; transcript_id "RvY_13325.1"; Scaffold008 rebuild exon 1796949 1797053 . - . gene_id "RvY_13325"; transcript_id "RvY_13325.1"; Scaffold008 rebuild exon 1797119 1797399 . - . gene_id "RvY_13325"; transcript_id "RvY_13325.1"; Scaffold008 rebuild transcript 1800140 1800517 . + . gene_id "RvY_13326"; transcript_id "RvY_13326.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1800140 1800517 . + . gene_id "RvY_13326"; transcript_id "RvY_13326.1"; Scaffold008 rebuild transcript 1802290 1803043 . + . gene_id "RvY_13327"; transcript_id "RvY_13327.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1802290 1802371 . + . gene_id "RvY_13327"; transcript_id "RvY_13327.1"; Scaffold008 rebuild exon 1802570 1802730 . + . gene_id "RvY_13327"; transcript_id "RvY_13327.1"; Scaffold008 rebuild exon 1802846 1803043 . + . gene_id "RvY_13327"; transcript_id "RvY_13327.1"; Scaffold008 rebuild transcript 1803091 1803718 . - . gene_id "RvY_13328"; transcript_id "RvY_13328.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1803091 1803371 . - . gene_id "RvY_13328"; transcript_id "RvY_13328.1"; Scaffold008 rebuild exon 1803592 1803718 . - . gene_id "RvY_13328"; transcript_id "RvY_13328.1"; Scaffold008 rebuild transcript 1815288 1816334 . + . gene_id "RvY_13329"; transcript_id "RvY_13329.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1815288 1816334 . + . gene_id "RvY_13329"; transcript_id "RvY_13329.1"; Scaffold008 rebuild transcript 1818352 1819395 . - . gene_id "RvY_13330"; transcript_id "RvY_13330.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1818352 1818501 . - . gene_id "RvY_13330"; transcript_id "RvY_13330.1"; Scaffold008 rebuild exon 1818607 1818719 . - . gene_id "RvY_13330"; transcript_id "RvY_13330.1"; Scaffold008 rebuild exon 1819341 1819395 . - . gene_id "RvY_13330"; transcript_id "RvY_13330.1"; Scaffold008 rebuild transcript 1820394 1821033 . - . gene_id "RvY_13331"; transcript_id "RvY_13331.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1820394 1820542 . - . gene_id "RvY_13331"; transcript_id "RvY_13331.1"; Scaffold008 rebuild exon 1820723 1820854 . - . gene_id "RvY_13331"; transcript_id "RvY_13331.1"; Scaffold008 rebuild exon 1820979 1821033 . - . gene_id "RvY_13331"; transcript_id "RvY_13331.1"; Scaffold008 rebuild transcript 1821011 1821286 . + . gene_id "RvY_13332"; transcript_id "RvY_13332.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1821011 1821286 . + . gene_id "RvY_13332"; transcript_id "RvY_13332.1"; Scaffold008 rebuild transcript 1821955 1822508 . - . gene_id "RvY_13333"; transcript_id "RvY_13333.1"; annotation "hypothetical protein."; Pfam "[Gly-zipper_YMGG] YMGG-like Gly-zipper|[Gly-zipper_OmpA] Glycine-zipper containing OmpA-like membrane domain|[Gly-zipper_Omp] Glycine zipper"; Scaffold008 rebuild exon 1821955 1822247 . - . gene_id "RvY_13333"; transcript_id "RvY_13333.1"; Scaffold008 rebuild exon 1822454 1822508 . - . gene_id "RvY_13333"; transcript_id "RvY_13333.1"; Scaffold008 rebuild transcript 1822843 1824215 . + . gene_id "RvY_13334"; transcript_id "RvY_13334.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1822843 1822852 . + . gene_id "RvY_13334"; transcript_id "RvY_13334.1"; Scaffold008 rebuild exon 1823914 1824215 . + . gene_id "RvY_13334"; transcript_id "RvY_13334.1"; Scaffold008 rebuild transcript 1824692 1825251 . - . gene_id "RvY_13335"; transcript_id "RvY_13335.1"; annotation "hypothetical protein."; Pfam "[Rick_17kDa_Anti] Glycine zipper 2TM domain"; Scaffold008 rebuild exon 1824692 1825098 . - . gene_id "RvY_13335"; transcript_id "RvY_13335.1"; Scaffold008 rebuild exon 1825197 1825251 . - . gene_id "RvY_13335"; transcript_id "RvY_13335.1"; Scaffold008 rebuild transcript 1827596 1829069 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.1"; gene_name "(1)K00517"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.14.1"; KO "(1)K00517"; similar_genes "(1)CP2CE_RABIT(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1827596 1827777 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.1"; Scaffold008 rebuild exon 1827856 1828119 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.1"; Scaffold008 rebuild exon 1828366 1828542 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.1"; Scaffold008 rebuild exon 1828613 1829069 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.1"; Scaffold008 rebuild transcript 1828548 1829576 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.2"; gene_name "(1)K00517"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.14.1"; KO "(1)K00517"; similar_genes "(1)CP2CE_RABIT(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1828548 1829576 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.2"; Scaffold008 rebuild transcript 1828548 1829576 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.3"; gene_name "(1)K00517"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.14.1"; KO "(1)K00517"; similar_genes "(1)CP2CE_RABIT(e-value:1.3e-06;bit-score:51.0)"; Scaffold008 rebuild exon 1828548 1829386 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.3"; Scaffold008 rebuild exon 1829465 1829576 . - . gene_id "RvY_13336"; transcript_id "RvY_13336.3"; Scaffold008 rebuild transcript 1830203 1831448 . - . gene_id "RvY_13337"; transcript_id "RvY_13337.1"; annotation "hypothetical protein."; Pfam "[Gly-zipper_YMGG] YMGG-like Gly-zipper|[Bacteriocin_IIc] Bacteriocin class II with double-glycine leader peptide|[DUF456]|[Gly-zipper_OmpA] Glycine-zipper containing OmpA-like membrane domain|[Rick_17kDa_Anti] Glycine zipper 2TM domain|[Gly-zipper_Omp] Glycine zipper"; Scaffold008 rebuild exon 1830203 1831005 . - . gene_id "RvY_13337"; transcript_id "RvY_13337.1"; Scaffold008 rebuild exon 1831099 1831188 . - . gene_id "RvY_13337"; transcript_id "RvY_13337.1"; Scaffold008 rebuild exon 1831397 1831448 . - . gene_id "RvY_13337"; transcript_id "RvY_13337.1"; Scaffold008 rebuild transcript 1832331 1833455 . - . gene_id "RvY_13338"; transcript_id "RvY_13338.1"; gene_name "pcp"; annotation "pyroglutamyl-peptidase [EC:3.4.19.3]"; Pfam "[DUF976] Caenorhabditis elegans protein of unknown function (DUF976)|[Peptidase_C15] Pyroglutamyl peptidase"; CDD "Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer."; EC "EC3.4.19.3"; KO "K01304"; Scaffold008 rebuild exon 1832331 1832767 . - . gene_id "RvY_13338"; transcript_id "RvY_13338.1"; Scaffold008 rebuild exon 1832955 1833206 . - . gene_id "RvY_13338"; transcript_id "RvY_13338.1"; Scaffold008 rebuild exon 1833269 1833455 . - . gene_id "RvY_13338"; transcript_id "RvY_13338.1"; Scaffold008 rebuild transcript 1833955 1836976 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; gene_name "phoA"; annotation "alkaline phosphatase [EC:3.1.3.1]"; Pfam "[Alk_phosphatase] Alkaline phosphatase"; CDD "Alkaline phosphatase homologues."; EC "EC3.1.3.1"; KO "K01077"; similar_genes "PPBE_MOUSE(e-value:6.3e-17;bit-score:85.0)"; Scaffold008 rebuild exon 1833955 1834430 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1834501 1834620 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1834693 1834722 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1834811 1834846 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1834936 1835202 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1835594 1835801 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1835866 1836219 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1836374 1836594 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild exon 1836904 1836976 . - . gene_id "RvY_13339"; transcript_id "RvY_13339.1"; Scaffold008 rebuild transcript 1840466 1841879 . + . gene_id "RvY_13340"; transcript_id "RvY_13340.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold008 rebuild exon 1840466 1841298 . + . gene_id "RvY_13340"; transcript_id "RvY_13340.1"; Scaffold008 rebuild exon 1841777 1841879 . + . gene_id "RvY_13340"; transcript_id "RvY_13340.1"; Scaffold008 rebuild transcript 1842265 1852998 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1842265 1842394 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1842489 1842573 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1842657 1843026 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1843117 1843260 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1843325 1843405 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1843483 1843521 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1843629 1843672 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1843787 1844088 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1844214 1844277 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild exon 1852635 1852998 . - . gene_id "RvY_13341"; transcript_id "RvY_13341.1"; Scaffold008 rebuild transcript 1856458 1856927 . - . gene_id "RvY_13342"; transcript_id "RvY_13342.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1856458 1856713 . - . gene_id "RvY_13342"; transcript_id "RvY_13342.1"; Scaffold008 rebuild exon 1856776 1856927 . - . gene_id "RvY_13342"; transcript_id "RvY_13342.1"; Scaffold008 rebuild transcript 1865183 1865755 . + . gene_id "RvY_13343"; transcript_id "RvY_13343.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold008 rebuild exon 1865183 1865755 . + . gene_id "RvY_13343"; transcript_id "RvY_13343.1"; Scaffold008 rebuild transcript 1865762 1866202 . + . gene_id "RvY_13344"; transcript_id "RvY_13344.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)|[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:5.5e-18;bit-score:89.0)"; Scaffold008 rebuild exon 1865762 1866202 . + . gene_id "RvY_13344"; transcript_id "RvY_13344.1"; Scaffold008 rebuild transcript 1869041 1870617 . - . gene_id "RvY_13345"; transcript_id "RvY_13345.1"; gene_name "GT8_like_2"; annotation "hypothetical protein."; Pfam "[Glyco_transf_8] Glycosyl transferase family 8"; CDD "GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed."; KO "K13676"; Scaffold008 rebuild exon 1869041 1869286 . - . gene_id "RvY_13345"; transcript_id "RvY_13345.1"; Scaffold008 rebuild exon 1869366 1869700 . - . gene_id "RvY_13345"; transcript_id "RvY_13345.1"; Scaffold008 rebuild exon 1869799 1869997 . - . gene_id "RvY_13345"; transcript_id "RvY_13345.1"; Scaffold008 rebuild exon 1870156 1870617 . - . gene_id "RvY_13345"; transcript_id "RvY_13345.1"; Scaffold008 rebuild transcript 1872550 1876839 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; annotation "putative Serrate RNA effector molecule homolog"; Pfam "[DUF3546]|[ARS2] Arsenite-resistance protein 2"; similar_genes "SRRT_DROWI(e-value:4.6e-45;bit-score:179.0)"; Scaffold008 rebuild exon 1872550 1872616 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1872682 1872898 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1873176 1873571 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1873893 1874241 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1874317 1874505 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1874595 1874735 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1874837 1875035 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1875177 1875482 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1875835 1875994 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1876221 1876249 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1876353 1876403 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1876486 1876620 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild exon 1876751 1876839 . - . gene_id "RvY_13346"; transcript_id "RvY_13346.1"; Scaffold008 rebuild transcript 1883181 1883522 . - . gene_id "RvY_13347"; transcript_id "RvY_13347.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1883181 1883522 . - . gene_id "RvY_13347"; transcript_id "RvY_13347.1"; Scaffold008 rebuild transcript 1885792 1887682 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1885792 1886073 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1886260 1886344 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1886441 1886579 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1886674 1886941 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1886999 1887049 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1887112 1887249 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1887314 1887391 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1887508 1887546 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild exon 1887620 1887682 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.1"; Scaffold008 rebuild transcript 1887287 1888743 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1887287 1887391 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild exon 1887508 1887546 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild exon 1887620 1887663 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild exon 1887763 1888079 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild exon 1888164 1888188 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild exon 1888262 1888303 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild exon 1888398 1888743 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.2"; Scaffold008 rebuild transcript 1885703 1887249 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; gene_name "(1)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1885703 1886073 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; Scaffold008 rebuild exon 1886441 1886579 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; Scaffold008 rebuild exon 1886674 1886732 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; Scaffold008 rebuild exon 1886830 1886941 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; Scaffold008 rebuild exon 1886999 1887049 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; Scaffold008 rebuild exon 1887112 1887249 . - . gene_id "RvY_13348"; transcript_id "RvY_13348.3"; Scaffold008 rebuild transcript 1890142 1890351 . + . gene_id "RvY_13349"; transcript_id "RvY_13349.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1890142 1890351 . + . gene_id "RvY_13349"; transcript_id "RvY_13349.1"; Scaffold008 rebuild transcript 1892130 1893482 . + . gene_id "RvY_13350"; transcript_id "RvY_13350.1"; gene_name "RhaT"; annotation "hypothetical protein."; Pfam "[EmrE] Multidrug resistance efflux transporter|[EamA] EamA-like transporter family"; CDD "Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]"; Scaffold008 rebuild exon 1892130 1893482 . + . gene_id "RvY_13350"; transcript_id "RvY_13350.1"; Scaffold008 rebuild transcript 1898078 1899157 . - . gene_id "RvY_13351"; transcript_id "RvY_13351.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold008 rebuild exon 1898078 1898147 . - . gene_id "RvY_13351"; transcript_id "RvY_13351.1"; Scaffold008 rebuild exon 1898325 1899157 . - . gene_id "RvY_13351"; transcript_id "RvY_13351.1"; Scaffold008 rebuild transcript 1900769 1903727 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold008 rebuild exon 1900769 1900920 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild exon 1901000 1901610 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild exon 1901697 1902120 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild exon 1902201 1902667 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild exon 1902837 1903097 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild exon 1903397 1903476 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild exon 1903566 1903727 . + . gene_id "RvY_13352"; transcript_id "RvY_13352.1"; Scaffold008 rebuild transcript 1905853 1906158 . - . gene_id "RvY_13353"; transcript_id "RvY_13353.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1905853 1906158 . - . gene_id "RvY_13353"; transcript_id "RvY_13353.1"; Scaffold008 rebuild transcript 1906586 1907418 . - . gene_id "RvY_13354"; transcript_id "RvY_13354.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1906586 1906728 . - . gene_id "RvY_13354"; transcript_id "RvY_13354.1"; Scaffold008 rebuild exon 1907166 1907418 . - . gene_id "RvY_13354"; transcript_id "RvY_13354.1"; Scaffold008 rebuild transcript 1907116 1907418 . - . gene_id "RvY_13354"; transcript_id "RvY_13354.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1907116 1907418 . - . gene_id "RvY_13354"; transcript_id "RvY_13354.2"; Scaffold008 rebuild transcript 1911240 1913471 . + . gene_id "RvY_13355"; transcript_id "RvY_13355.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1911240 1911497 . + . gene_id "RvY_13355"; transcript_id "RvY_13355.1"; Scaffold008 rebuild exon 1913385 1913471 . + . gene_id "RvY_13355"; transcript_id "RvY_13355.1"; Scaffold008 rebuild transcript 1919307 1919681 . - . gene_id "RvY_13356"; transcript_id "RvY_13356.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1919307 1919681 . - . gene_id "RvY_13356"; transcript_id "RvY_13356.1"; Scaffold008 rebuild transcript 1922643 1922894 . + . gene_id "RvY_13357"; transcript_id "RvY_13357.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1922643 1922894 . + . gene_id "RvY_13357"; transcript_id "RvY_13357.1"; Scaffold008 rebuild transcript 1924083 1925005 . - . gene_id "RvY_13358"; transcript_id "RvY_13358.1"; gene_name "MRP_assoc_pro"; annotation "hypothetical protein."; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; Scaffold008 rebuild exon 1924083 1924289 . - . gene_id "RvY_13358"; transcript_id "RvY_13358.1"; Scaffold008 rebuild exon 1924474 1924616 . - . gene_id "RvY_13358"; transcript_id "RvY_13358.1"; Scaffold008 rebuild exon 1924879 1925005 . - . gene_id "RvY_13358"; transcript_id "RvY_13358.1"; Scaffold008 rebuild transcript 1925127 1926487 . - . gene_id "RvY_13359"; transcript_id "RvY_13359.1"; gene_name "PKA"; annotation "cAMP-dependent protein kinase catalytic subunit alpha"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and Scaffold008 rebuild exon 1925127 1925572 . - . gene_id "RvY_13359"; transcript_id "RvY_13359.1"; Scaffold008 rebuild exon 1925863 1926487 . - . gene_id "RvY_13359"; transcript_id "RvY_13359.1"; Scaffold008 rebuild transcript 1927014 1927682 . - . gene_id "RvY_13360"; transcript_id "RvY_13360.1"; annotation "(1)putative B9 domain-containing protein 2(2)hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; similar_genes "(1)B9D2_DANRE(e-value:6.9e-29;bit-score:125.0)"; Scaffold008 rebuild exon 1927014 1927327 . - . gene_id "RvY_13360"; transcript_id "RvY_13360.1"; Scaffold008 rebuild exon 1927396 1927521 . - . gene_id "RvY_13360"; transcript_id "RvY_13360.1"; Scaffold008 rebuild exon 1927595 1927682 . - . gene_id "RvY_13360"; transcript_id "RvY_13360.1"; Scaffold008 rebuild transcript 1926832 1927185 . - . gene_id "RvY_13360"; transcript_id "RvY_13360.2"; annotation "(1)putative B9 domain-containing protein 2(2)hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; similar_genes "(1)B9D2_DANRE(e-value:6.9e-29;bit-score:125.0)"; Scaffold008 rebuild exon 1926832 1927185 . - . gene_id "RvY_13360"; transcript_id "RvY_13360.2"; Scaffold008 rebuild transcript 1928103 1929671 . - . gene_id "RvY_13361"; transcript_id "RvY_13361.1"; gene_name "FARSA"; annotation "putative Phenylalanyl-tRNA synthetase, mitochondrial"; Pfam "[tRNA-synt_2d] tRNA synthetases class II core domain (F)|[FDX-ACB] Ferredoxin-fold anticodon binding domain"; CDD "phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This model models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species."; EC "EC6.1.1.20"; KO "K01889"; similar_genes "SYFM_HUMAN(e-value:6.6e-40;bit-score:162.0)"; Scaffold008 rebuild exon 1928103 1928707 . - . gene_id "RvY_13361"; transcript_id "RvY_13361.1"; Scaffold008 rebuild exon 1928936 1929671 . - . gene_id "RvY_13361"; transcript_id "RvY_13361.1"; Scaffold008 rebuild transcript 1930744 1931247 . + . gene_id "RvY_13362"; transcript_id "RvY_13362.1"; gene_name "nifU"; annotation "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"; Pfam "[NifU_N] NifU-like N terminal domain"; CDD "scaffold protein; Provisional"; KO "K04488"; similar_genes "ISCU_MOUSE(e-value:7.3e-54;bit-score:208.0)"; Scaffold008 rebuild exon 1930744 1931247 . + . gene_id "RvY_13362"; transcript_id "RvY_13362.1"; Scaffold008 rebuild transcript 1931664 1935072 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; gene_name "TMPRSS9"; annotation "transmembrane protease, serine 9 [EC:3.4.21.-]"; Pfam "[CUB]|[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold008 rebuild exon 1931664 1931726 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1931791 1931959 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1932038 1932146 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1932375 1932517 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1932623 1932689 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1932753 1932793 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1932873 1932905 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1933001 1933029 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1933103 1933138 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1933218 1933506 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1933582 1933743 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1933814 1933976 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1934065 1934181 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1934271 1934342 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1934473 1934513 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1934616 1934701 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1934797 1934909 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild exon 1935006 1935072 . - . gene_id "RvY_13363"; transcript_id "RvY_13363.1"; Scaffold008 rebuild transcript 1935651 1937431 . - . gene_id "RvY_13364"; transcript_id "RvY_13364.1"; annotation "Lariat debranching enzyme"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[DBR1] Lariat debranching enzyme, C-terminal domain|[Metallophos_2] Calcineurin-like phosphoesterase superfamily domain"; EC "EC3.1.-.-"; similar_genes "DBR1_DROPS(e-value:2.4e-86;bit-score:316.0)"; Scaffold008 rebuild exon 1935651 1936555 . - . gene_id "RvY_13364"; transcript_id "RvY_13364.1"; Scaffold008 rebuild exon 1936759 1937431 . - . gene_id "RvY_13364"; transcript_id "RvY_13364.1"; Scaffold008 rebuild transcript 1937900 1941419 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; gene_name "COG0679"; annotation "hypothetical protein."; Pfam "[Mem_trans] Membrane transport protein"; CDD "Predicted permeases [General function prediction only]"; similar_genes "GP155_PONAB(e-value:1.2e-13;bit-score:74.0)"; Scaffold008 rebuild exon 1937900 1938335 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1938682 1939105 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1939166 1939331 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1939460 1939615 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1939718 1939801 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1939876 1940087 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1940157 1940247 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1940315 1940555 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1940626 1940972 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1941042 1941143 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1941248 1941315 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild exon 1941386 1941419 . + . gene_id "RvY_13365"; transcript_id "RvY_13365.1"; Scaffold008 rebuild transcript 1946302 1946997 . + . gene_id "RvY_13366"; transcript_id "RvY_13366.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1946302 1946997 . + . gene_id "RvY_13366"; transcript_id "RvY_13366.1"; Scaffold008 rebuild transcript 1947323 1947499 . - . gene_id "RvY_13367"; transcript_id "RvY_13367.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1947323 1947499 . - . gene_id "RvY_13367"; transcript_id "RvY_13367.1"; Scaffold008 rebuild transcript 1949836 1952154 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; annotation "hypothetical protein."; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; Scaffold008 rebuild exon 1949836 1949991 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild exon 1950086 1950493 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild exon 1950568 1950694 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild exon 1950776 1950955 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild exon 1951055 1951425 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild exon 1951496 1951593 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild exon 1952034 1952154 . - . gene_id "RvY_13368"; transcript_id "RvY_13368.1"; Scaffold008 rebuild transcript 1952946 1953275 . - . gene_id "RvY_13369"; transcript_id "RvY_13369.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1952946 1953275 . - . gene_id "RvY_13369"; transcript_id "RvY_13369.1"; Scaffold008 rebuild transcript 1953512 1954721 . - . gene_id "RvY_13370"; transcript_id "RvY_13370.1"; annotation "hypothetical protein."; Pfam "[7tm_3] 7 transmembrane sweet-taste receptor of 3 GCPR"; Scaffold008 rebuild exon 1953512 1953592 . - . gene_id "RvY_13370"; transcript_id "RvY_13370.1"; Scaffold008 rebuild exon 1953670 1953775 . - . gene_id "RvY_13370"; transcript_id "RvY_13370.1"; Scaffold008 rebuild exon 1953841 1954209 . - . gene_id "RvY_13370"; transcript_id "RvY_13370.1"; Scaffold008 rebuild exon 1954424 1954533 . - . gene_id "RvY_13370"; transcript_id "RvY_13370.1"; Scaffold008 rebuild exon 1954620 1954721 . - . gene_id "RvY_13370"; transcript_id "RvY_13370.1"; Scaffold008 rebuild transcript 1955301 1957033 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1955301 1955508 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.1"; Scaffold008 rebuild exon 1955578 1955620 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.1"; Scaffold008 rebuild exon 1955866 1956265 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.1"; Scaffold008 rebuild exon 1956757 1956845 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.1"; Scaffold008 rebuild exon 1956937 1957033 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.1"; Scaffold008 rebuild transcript 1955738 1957033 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.2"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1955738 1956265 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.2"; Scaffold008 rebuild exon 1956757 1956845 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.2"; Scaffold008 rebuild exon 1956937 1957033 . - . gene_id "RvY_13371"; transcript_id "RvY_13371.2"; Scaffold008 rebuild transcript 1957487 1960134 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; gene_name "TDP1"; annotation "tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]"; Pfam "[zf-CCHH] Zinc-finger (CX5CX6HX5H) motif|[Tyr-DNA_phospho] Tyrosyl-DNA phosphodiesterase"; EC "EC3.1.4.-"; KO "K10862"; similar_genes "TYDP1_RAT(e-value:2.5e-20;bit-score:97.0)"; Scaffold008 rebuild exon 1957487 1957559 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1957690 1957986 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1958045 1958152 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1958235 1958350 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1958442 1958700 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1958756 1958908 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1958975 1959102 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1959179 1959337 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1959526 1959569 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1959641 1959958 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild exon 1960020 1960134 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.1"; Scaffold008 rebuild transcript 1957686 1960134 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; gene_name "TDP1"; annotation "tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]"; Pfam "[zf-CCHH] Zinc-finger (CX5CX6HX5H) motif|[Tyr-DNA_phospho] Tyrosyl-DNA phosphodiesterase"; EC "EC3.1.4.-"; KO "K10862"; similar_genes "TYDP1_RAT(e-value:2.5e-20;bit-score:97.0)"; Scaffold008 rebuild exon 1957686 1957986 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1958045 1958152 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1958235 1958350 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1958442 1958700 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1958756 1958908 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1958975 1959102 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1959179 1959337 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1959526 1959569 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1959641 1959958 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild exon 1960020 1960134 . - . gene_id "RvY_13372"; transcript_id "RvY_13372.2"; Scaffold008 rebuild transcript 1960527 1960947 . + . gene_id "RvY_13373"; transcript_id "RvY_13373.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1960527 1960644 . + . gene_id "RvY_13373"; transcript_id "RvY_13373.1"; Scaffold008 rebuild exon 1960844 1960947 . + . gene_id "RvY_13373"; transcript_id "RvY_13373.1"; Scaffold008 rebuild transcript 1960944 1961162 . - . gene_id "RvY_13374"; transcript_id "RvY_13374.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1960944 1961162 . - . gene_id "RvY_13374"; transcript_id "RvY_13374.1"; Scaffold008 rebuild transcript 1961762 1962378 . - . gene_id "RvY_13375"; transcript_id "RvY_13375.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1961762 1962130 . - . gene_id "RvY_13375"; transcript_id "RvY_13375.1"; Scaffold008 rebuild exon 1962247 1962378 . - . gene_id "RvY_13375"; transcript_id "RvY_13375.1"; Scaffold008 rebuild transcript 1963593 1964309 . + . gene_id "RvY_13376"; transcript_id "RvY_13376.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; Scaffold008 rebuild exon 1963593 1963865 . + . gene_id "RvY_13376"; transcript_id "RvY_13376.1"; Scaffold008 rebuild exon 1963933 1964094 . + . gene_id "RvY_13376"; transcript_id "RvY_13376.1"; Scaffold008 rebuild exon 1964160 1964309 . + . gene_id "RvY_13376"; transcript_id "RvY_13376.1"; Scaffold008 rebuild transcript 1965037 1965732 . - . gene_id "RvY_13377"; transcript_id "RvY_13377.1"; gene_name "DoH"; annotation "hypothetical protein."; Pfam "[DOMON]"; CDD "Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press)."; Scaffold008 rebuild exon 1965037 1965198 . - . gene_id "RvY_13377"; transcript_id "RvY_13377.1"; Scaffold008 rebuild exon 1965262 1965420 . - . gene_id "RvY_13377"; transcript_id "RvY_13377.1"; Scaffold008 rebuild exon 1965478 1965732 . - . gene_id "RvY_13377"; transcript_id "RvY_13377.1"; Scaffold008 rebuild transcript 1966266 1967887 . - . gene_id "RvY_13378"; transcript_id "RvY_13378.1"; gene_name "CAP10"; annotation "KTEL motif-containing protein 1"; Pfam "[Glyco_transf_90] Glycosyl transferase family 90"; CDD "Putative lipopolysaccharide-modifying enzyme."; KO "K13667"; similar_genes "KTEL1_MOUSE(e-value:4.8e-68;bit-score:255.0)"; Scaffold008 rebuild exon 1966266 1966407 . - . gene_id "RvY_13378"; transcript_id "RvY_13378.1"; Scaffold008 rebuild exon 1966472 1967447 . - . gene_id "RvY_13378"; transcript_id "RvY_13378.1"; Scaffold008 rebuild exon 1967653 1967887 . - . gene_id "RvY_13378"; transcript_id "RvY_13378.1"; Scaffold008 rebuild transcript 1970258 1970591 . - . gene_id "RvY_13379"; transcript_id "RvY_13379.1"; product "FABP"; annotation "FABP|hypothetical protein."; Pfam "[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; Scaffold008 rebuild exon 1970258 1970439 . - . gene_id "RvY_13379"; transcript_id "RvY_13379.1"; Scaffold008 rebuild exon 1970519 1970591 . - . gene_id "RvY_13379"; transcript_id "RvY_13379.1"; Scaffold008 rebuild transcript 1973704 1974587 . + . gene_id "RvY_13380"; transcript_id "RvY_13380.1"; annotation "hypothetical protein."; Pfam "[DHFR_1] Dihydrofolate reductase"; Scaffold008 rebuild exon 1973704 1973801 . + . gene_id "RvY_13380"; transcript_id "RvY_13380.1"; Scaffold008 rebuild exon 1973879 1973928 . + . gene_id "RvY_13380"; transcript_id "RvY_13380.1"; Scaffold008 rebuild exon 1974006 1974360 . + . gene_id "RvY_13380"; transcript_id "RvY_13380.1"; Scaffold008 rebuild exon 1974473 1974587 . + . gene_id "RvY_13380"; transcript_id "RvY_13380.1"; Scaffold008 rebuild transcript 1975685 1975993 . + . gene_id "RvY_13381"; transcript_id "RvY_13381.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1975685 1975993 . + . gene_id "RvY_13381"; transcript_id "RvY_13381.1"; Scaffold008 rebuild transcript 1979863 1980654 . + . gene_id "RvY_13382"; transcript_id "RvY_13382.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1979863 1980654 . + . gene_id "RvY_13382"; transcript_id "RvY_13382.1"; Scaffold008 rebuild transcript 1981418 1984400 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1981418 1981821 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1981895 1982026 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1982110 1982403 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1982614 1982989 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1983125 1983424 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1983622 1983717 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1984018 1984102 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1984197 1984267 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild exon 1984365 1984400 . - . gene_id "RvY_13383"; transcript_id "RvY_13383.1"; Scaffold008 rebuild transcript 1988228 1989580 . + . gene_id "RvY_13384"; transcript_id "RvY_13384.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold008 rebuild exon 1988228 1988451 . + . gene_id "RvY_13384"; transcript_id "RvY_13384.1"; Scaffold008 rebuild exon 1988529 1988666 . + . gene_id "RvY_13384"; transcript_id "RvY_13384.1"; Scaffold008 rebuild exon 1988729 1988978 . + . gene_id "RvY_13384"; transcript_id "RvY_13384.1"; Scaffold008 rebuild exon 1989035 1989580 . + . gene_id "RvY_13384"; transcript_id "RvY_13384.1"; Scaffold008 rebuild transcript 1989892 1991256 . - . gene_id "RvY_13385"; transcript_id "RvY_13385.1"; gene_name "RhaT"; annotation "hypothetical protein."; Pfam "[EmrE] Multidrug resistance efflux transporter|[EamA] EamA-like transporter family"; CDD "Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]"; Scaffold008 rebuild exon 1989892 1991256 . - . gene_id "RvY_13385"; transcript_id "RvY_13385.1"; Scaffold008 rebuild transcript 1992601 1993106 . - . gene_id "RvY_13386"; transcript_id "RvY_13386.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 1992601 1992654 . - . gene_id "RvY_13386"; transcript_id "RvY_13386.1"; Scaffold008 rebuild exon 1993020 1993106 . - . gene_id "RvY_13386"; transcript_id "RvY_13386.1"; Scaffold008 rebuild transcript 1999003 2001394 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.1"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1999003 1999402 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.1"; Scaffold008 rebuild exon 1999838 1999987 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.1"; Scaffold008 rebuild exon 2000076 2000324 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.1"; Scaffold008 rebuild exon 2000405 2000448 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.1"; Scaffold008 rebuild exon 2001251 2001394 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.1"; Scaffold008 rebuild transcript 1999093 2001394 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.2"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1999093 1999402 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.2"; Scaffold008 rebuild exon 1999838 1999987 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.2"; Scaffold008 rebuild exon 2000076 2000324 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.2"; Scaffold008 rebuild exon 2000405 2000448 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.2"; Scaffold008 rebuild exon 2001251 2001394 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.2"; Scaffold008 rebuild transcript 1999003 2000356 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.3"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 1999003 1999402 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.3"; Scaffold008 rebuild exon 1999838 1999987 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.3"; Scaffold008 rebuild exon 2000076 2000356 . + . gene_id "RvY_13387"; transcript_id "RvY_13387.3"; Scaffold008 rebuild transcript 2001426 2003997 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 2001426 2001428 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild exon 2001490 2001627 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild exon 2001709 2001936 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild exon 2002988 2003141 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild exon 2003206 2003299 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild exon 2003390 2003507 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild exon 2003845 2003997 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.1"; Scaffold008 rebuild transcript 2001426 2003173 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.2"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 2001426 2001428 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.2"; Scaffold008 rebuild exon 2001490 2001627 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.2"; Scaffold008 rebuild exon 2001709 2001936 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.2"; Scaffold008 rebuild exon 2002988 2003173 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.2"; Scaffold008 rebuild transcript 2002849 2003863 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.3"; gene_name "(1,2)PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "(1,2)Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold008 rebuild exon 2002849 2003141 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.3"; Scaffold008 rebuild exon 2003206 2003303 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.3"; Scaffold008 rebuild exon 2003390 2003507 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.3"; Scaffold008 rebuild exon 2003845 2003863 . + . gene_id "RvY_13388"; transcript_id "RvY_13388.3"; Scaffold008 rebuild transcript 2004088 2006284 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; Scaffold008 rebuild exon 2004088 2004234 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2004302 2004541 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2004609 2004731 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2004794 2005017 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2005092 2005169 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2005256 2005481 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2005542 2005738 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2005837 2005886 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2005990 2006132 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild exon 2006237 2006284 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.1"; Scaffold008 rebuild transcript 2004088 2005921 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; Scaffold008 rebuild exon 2004088 2004234 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2004302 2004541 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2004609 2004731 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2004794 2005017 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2005092 2005169 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2005256 2005481 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2005542 2005738 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild exon 2005837 2005921 . + . gene_id "RvY_13389"; transcript_id "RvY_13389.2"; Scaffold008 rebuild transcript 2007464 2007757 . + . gene_id "RvY_13390"; transcript_id "RvY_13390.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2007464 2007757 . + . gene_id "RvY_13390"; transcript_id "RvY_13390.1"; Scaffold008 rebuild transcript 2010785 2015234 . + . gene_id "RvY_13391"; transcript_id "RvY_13391.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2010785 2011330 . + . gene_id "RvY_13391"; transcript_id "RvY_13391.1"; Scaffold008 rebuild exon 2015109 2015234 . + . gene_id "RvY_13391"; transcript_id "RvY_13391.1"; Scaffold008 rebuild transcript 2015396 2016944 . - . gene_id "RvY_13392"; transcript_id "RvY_13392.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2015396 2016038 . - . gene_id "RvY_13392"; transcript_id "RvY_13392.1"; Scaffold008 rebuild exon 2016826 2016944 . - . gene_id "RvY_13392"; transcript_id "RvY_13392.1"; Scaffold008 rebuild transcript 2018667 2018768 . - . gene_id "RvY_13393"; transcript_id "RvY_13393.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2018667 2018768 . - . gene_id "RvY_13393"; transcript_id "RvY_13393.1"; Scaffold008 rebuild transcript 2018867 2019103 . - . gene_id "RvY_13394"; transcript_id "RvY_13394.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2018867 2019103 . - . gene_id "RvY_13394"; transcript_id "RvY_13394.1"; Scaffold008 rebuild transcript 2019525 2025292 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; gene_name "yhhT"; annotation "hypothetical protein."; Pfam "[UPF0118] Domain of unknown function DUF20"; CDD "Predicted permease, member of the PurR regulon [General function prediction only]"; similar_genes "CI005_HUMAN(e-value:2.9e-06;bit-score:50.0)"; Scaffold008 rebuild exon 2019525 2019549 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2019617 2020165 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2020413 2020688 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2020744 2020880 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2022184 2022306 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2022380 2022979 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2023792 2024825 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild exon 2025064 2025292 . - . gene_id "RvY_13395"; transcript_id "RvY_13395.1"; Scaffold008 rebuild transcript 2026022 2028864 . + . gene_id "RvY_13396"; transcript_id "RvY_13396.1"; gene_name "eIF-2BE"; annotation "putative Translation initiation factor eIF-2B subunit epsilon"; Pfam "[NTP_transferase] Nucleotidyl transferase|[Hexapep] Bacterial transferase hexapeptide (six repeats)|[W2] eIF4-gamma/eIF5/eIF2-epsilon"; CDD "The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating Scaffold008 rebuild exon 2026022 2026656 . + . gene_id "RvY_13396"; transcript_id "RvY_13396.1"; Scaffold008 rebuild exon 2026973 2027666 . + . gene_id "RvY_13396"; transcript_id "RvY_13396.1"; Scaffold008 rebuild exon 2027899 2028864 . + . gene_id "RvY_13396"; transcript_id "RvY_13396.1"; Scaffold008 rebuild transcript 2029673 2030483 . + . gene_id "RvY_13397"; transcript_id "RvY_13397.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2029673 2029709 . + . gene_id "RvY_13397"; transcript_id "RvY_13397.1"; Scaffold008 rebuild exon 2030284 2030483 . + . gene_id "RvY_13397"; transcript_id "RvY_13397.1"; Scaffold008 rebuild transcript 2032568 2033292 . - . gene_id "RvY_13398"; transcript_id "RvY_13398.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2032568 2032642 . - . gene_id "RvY_13398"; transcript_id "RvY_13398.1"; Scaffold008 rebuild exon 2033176 2033292 . - . gene_id "RvY_13398"; transcript_id "RvY_13398.1"; Scaffold008 rebuild transcript 2033365 2034831 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold008 rebuild exon 2033365 2033706 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.1"; Scaffold008 rebuild exon 2033763 2034196 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.1"; Scaffold008 rebuild exon 2034666 2034831 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.1"; Scaffold008 rebuild transcript 2033365 2034083 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.2"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold008 rebuild exon 2033365 2033706 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.2"; Scaffold008 rebuild exon 2033763 2034083 . - . gene_id "RvY_13399"; transcript_id "RvY_13399.2"; Scaffold008 rebuild transcript 2035009 2035611 . - . gene_id "RvY_13400"; transcript_id "RvY_13400.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2035009 2035611 . - . gene_id "RvY_13400"; transcript_id "RvY_13400.1"; Scaffold008 rebuild transcript 2042139 2042360 . + . gene_id "RvY_13401"; transcript_id "RvY_13401.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2042139 2042360 . + . gene_id "RvY_13401"; transcript_id "RvY_13401.1"; Scaffold008 rebuild transcript 2043631 2044251 . + . gene_id "RvY_13402"; transcript_id "RvY_13402.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2043631 2043699 . + . gene_id "RvY_13402"; transcript_id "RvY_13402.1"; Scaffold008 rebuild exon 2044069 2044251 . + . gene_id "RvY_13402"; transcript_id "RvY_13402.1"; Scaffold008 rebuild transcript 2045022 2047735 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; annotation "hypothetical protein."; Pfam "[HRM] Hormone receptor domain|[7tm_2] 7 transmembrane receptor (Secretin family)"; Scaffold008 rebuild exon 2045022 2045085 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2045159 2045548 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2045775 2045991 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2046054 2046277 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2046368 2046445 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2046636 2046690 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2046774 2046840 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2046940 2047028 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2047116 2047290 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild exon 2047361 2047735 . + . gene_id "RvY_13403"; transcript_id "RvY_13403.1"; Scaffold008 rebuild transcript 2048197 2048831 . + . gene_id "RvY_13404"; transcript_id "RvY_13404.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2048197 2048293 . + . gene_id "RvY_13404"; transcript_id "RvY_13404.1"; Scaffold008 rebuild exon 2048686 2048831 . + . gene_id "RvY_13404"; transcript_id "RvY_13404.1"; Scaffold008 rebuild transcript 2049592 2051830 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; gene_name "SAKS1_UBX"; annotation "hypothetical protein."; Pfam "[UBA] UBA/TS-N domain|[UBX]"; CDD "SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins."; similar_genes "UBX1A_XENLA(e-value:3.6e-13;bit-score:73.0)"; Scaffold008 rebuild exon 2049592 2049635 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild exon 2050440 2050623 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild exon 2050886 2050996 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild exon 2051072 2051391 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild exon 2051488 2051534 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild exon 2051641 2051694 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild exon 2051766 2051830 . - . gene_id "RvY_13405"; transcript_id "RvY_13405.1"; Scaffold008 rebuild transcript 2051913 2052047 . + . gene_id "RvY_13406"; transcript_id "RvY_13406.1"; annotation "hypothetical protein."; Scaffold008 rebuild exon 2051913 2052047 . + . gene_id "RvY_13406"; transcript_id "RvY_13406.1"; Scaffold009 rebuild transcript 422 3396 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 422 793 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; Scaffold009 rebuild exon 1130 1333 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; Scaffold009 rebuild exon 1410 1596 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; Scaffold009 rebuild exon 1658 2024 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; Scaffold009 rebuild exon 2294 2585 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; Scaffold009 rebuild exon 2710 3396 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.1"; Scaffold009 rebuild transcript 422 2964 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 422 793 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; Scaffold009 rebuild exon 1130 1333 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; Scaffold009 rebuild exon 1410 1596 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; Scaffold009 rebuild exon 1658 2021 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; Scaffold009 rebuild exon 2294 2585 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; Scaffold009 rebuild exon 2710 2964 . - . gene_id "RvY_13407"; transcript_id "RvY_13407.2"; Scaffold009 rebuild transcript 3455 7002 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; gene_name "PGM2"; annotation "putative Glucose 1,6-bisphosphate synthase"; Pfam "[PGM_PMM_III] Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III|[PGM_PMM_II] Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II|[PGM_PMM_I] Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I|[PGM_PMM_IV] Phosphoglucomutase/phosphomannomutase, C-terminal domain"; CDD "This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located Scaffold009 rebuild exon 3455 3535 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 3592 3691 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 3766 3922 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 4174 4258 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 4330 4601 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 4817 4940 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 5040 5105 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 5233 5327 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 5432 5529 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 5609 5915 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 5976 6078 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 6526 6612 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 6688 6821 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild exon 6900 7002 . + . gene_id "RvY_13408"; transcript_id "RvY_13408.1"; Scaffold009 rebuild transcript 8491 9663 . - . gene_id "RvY_13409"; transcript_id "RvY_13409.1"; annotation "hypothetical protein."; Pfam "[Ninjurin]"; Scaffold009 rebuild exon 8491 8885 . - . gene_id "RvY_13409"; transcript_id "RvY_13409.1"; Scaffold009 rebuild exon 9090 9663 . - . gene_id "RvY_13409"; transcript_id "RvY_13409.1"; Scaffold009 rebuild transcript 11257 13198 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold009 rebuild exon 11257 11709 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.1"; Scaffold009 rebuild exon 12070 12654 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.1"; Scaffold009 rebuild exon 12953 13198 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.1"; Scaffold009 rebuild transcript 11609 13198 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold009 rebuild exon 11609 11709 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.2"; Scaffold009 rebuild exon 12081 12654 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.2"; Scaffold009 rebuild exon 12953 13198 . + . gene_id "RvY_13410"; transcript_id "RvY_13410.2"; Scaffold009 rebuild transcript 14639 15977 . + . gene_id "RvY_13411"; transcript_id "RvY_13411.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 14639 15220 . + . gene_id "RvY_13411"; transcript_id "RvY_13411.1"; Scaffold009 rebuild exon 15413 15778 . + . gene_id "RvY_13411"; transcript_id "RvY_13411.1"; Scaffold009 rebuild exon 15960 15977 . + . gene_id "RvY_13411"; transcript_id "RvY_13411.1"; Scaffold009 rebuild transcript 16069 19964 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; annotation "putative Sec1 family domain-containing protein 1"; Pfam "[Sec1] Sec1 family"; similar_genes "SCFD1_RAT(e-value:9.9e-41;bit-score:164.0)"; Scaffold009 rebuild exon 16069 16173 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 16246 16345 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 16440 16546 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 16818 16893 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 16963 17188 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 17333 17369 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 17438 17579 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 17686 17759 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 17862 17952 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 18056 18286 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 18509 18594 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 18660 18715 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 18809 18898 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 18977 19061 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 19176 19298 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 19483 19573 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 19639 19727 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 19789 19874 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild exon 19934 19964 . - . gene_id "RvY_13412"; transcript_id "RvY_13412.1"; Scaffold009 rebuild transcript 20519 25083 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; annotation "hypothetical protein."; Pfam "[zf-H2C2_5] C2H2-type zinc-finger domain"; Scaffold009 rebuild exon 20519 20738 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 20968 21042 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 21133 21243 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 21335 21457 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 21531 21818 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 22132 22482 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 22750 22974 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 23157 23435 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 23610 23870 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 23947 24015 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 24197 24475 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 24687 24896 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild exon 24959 25083 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.1"; Scaffold009 rebuild transcript 20519 25083 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; annotation "hypothetical protein."; Pfam "[zf-H2C2_5] C2H2-type zinc-finger domain"; Scaffold009 rebuild exon 20519 20738 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 20968 21042 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 21133 21243 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 21335 21457 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 21531 21818 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 22132 22482 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 22750 22974 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 23157 23435 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 23610 23870 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 23947 24015 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 24209 24475 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild exon 24959 25083 . + . gene_id "RvY_13413"; transcript_id "RvY_13413.2"; Scaffold009 rebuild transcript 25587 25918 . - . gene_id "RvY_13414"; transcript_id "RvY_13414.1"; annotation "hypothetical protein."; Pfam "[Enkurin] Calmodulin-binding"; Scaffold009 rebuild exon 25587 25747 . - . gene_id "RvY_13414"; transcript_id "RvY_13414.1"; Scaffold009 rebuild exon 25822 25918 . - . gene_id "RvY_13414"; transcript_id "RvY_13414.1"; Scaffold009 rebuild transcript 26231 27171 . - . gene_id "RvY_13415"; transcript_id "RvY_13415.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 26231 26593 . - . gene_id "RvY_13415"; transcript_id "RvY_13415.1"; Scaffold009 rebuild exon 26766 26920 . - . gene_id "RvY_13415"; transcript_id "RvY_13415.1"; Scaffold009 rebuild exon 27003 27171 . - . gene_id "RvY_13415"; transcript_id "RvY_13415.1"; Scaffold009 rebuild transcript 27908 28643 . + . gene_id "RvY_13416"; transcript_id "RvY_13416.1"; gene_name "(1)Ap4A_hydrolase_human_like"; annotation "hypothetical protein."; CDD "(1)Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies."; Scaffold009 rebuild exon 27908 27950 . + . gene_id "RvY_13416"; transcript_id "RvY_13416.1"; Scaffold009 rebuild exon 28052 28180 . + . gene_id "RvY_13416"; transcript_id "RvY_13416.1"; Scaffold009 rebuild exon 28267 28643 . + . gene_id "RvY_13416"; transcript_id "RvY_13416.1"; Scaffold009 rebuild transcript 28151 28444 . + . gene_id "RvY_13416"; transcript_id "RvY_13416.2"; gene_name "(1)Ap4A_hydrolase_human_like"; annotation "hypothetical protein."; CDD "(1)Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies."; Scaffold009 rebuild exon 28151 28444 . + . gene_id "RvY_13416"; transcript_id "RvY_13416.2"; Scaffold009 rebuild transcript 29616 31083 . + . gene_id "RvY_13417"; transcript_id "RvY_13417.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 29616 30257 . + . gene_id "RvY_13417"; transcript_id "RvY_13417.1"; Scaffold009 rebuild exon 30676 31083 . + . gene_id "RvY_13417"; transcript_id "RvY_13417.1"; Scaffold009 rebuild transcript 31740 32784 . - . gene_id "RvY_13418"; transcript_id "RvY_13418.1"; gene_name "CYCLIN"; annotation "hypothetical protein."; CDD "domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control."; similar_genes "CCNL2_RAT(e-value:6.7e-08;bit-score:55.0)"; Scaffold009 rebuild exon 31740 31791 . - . gene_id "RvY_13418"; transcript_id "RvY_13418.1"; Scaffold009 rebuild exon 31862 32193 . - . gene_id "RvY_13418"; transcript_id "RvY_13418.1"; Scaffold009 rebuild exon 32423 32530 . - . gene_id "RvY_13418"; transcript_id "RvY_13418.1"; Scaffold009 rebuild exon 32692 32784 . - . gene_id "RvY_13418"; transcript_id "RvY_13418.1"; Scaffold009 rebuild transcript 33068 35272 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; gene_name "CCL1"; annotation "hypothetical protein."; Pfam "[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]"; similar_genes "CCNL1_XENLA(e-value:9.2e-14;bit-score:75.0)"; Scaffold009 rebuild exon 33068 33068 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; Scaffold009 rebuild exon 33632 33708 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; Scaffold009 rebuild exon 33792 33912 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; Scaffold009 rebuild exon 33974 34083 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; Scaffold009 rebuild exon 34572 34646 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; Scaffold009 rebuild exon 34730 35272 . - . gene_id "RvY_13419"; transcript_id "RvY_13419.1"; Scaffold009 rebuild transcript 36386 38670 . + . gene_id "RvY_13420"; transcript_id "RvY_13420.1"; annotation "hypothetical protein."; Pfam "[XK-related] XK-related protein"; Scaffold009 rebuild exon 36386 36783 . + . gene_id "RvY_13420"; transcript_id "RvY_13420.1"; Scaffold009 rebuild exon 36936 37840 . + . gene_id "RvY_13420"; transcript_id "RvY_13420.1"; Scaffold009 rebuild exon 38174 38670 . + . gene_id "RvY_13420"; transcript_id "RvY_13420.1"; Scaffold009 rebuild transcript 39425 41601 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; annotation "Sphingomyelin synthase-related protein 1"; Pfam "[PAP2_C] PAP2 superfamily C-terminal|[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "SAMD8_MOUSE(e-value:1.5e-54;bit-score:210.0)"; Scaffold009 rebuild exon 39425 39679 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; Scaffold009 rebuild exon 39913 39998 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; Scaffold009 rebuild exon 40080 40230 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; Scaffold009 rebuild exon 40294 40411 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; Scaffold009 rebuild exon 40469 40672 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; Scaffold009 rebuild exon 41036 41601 . - . gene_id "RvY_13421"; transcript_id "RvY_13421.1"; Scaffold009 rebuild transcript 42683 42898 . + . gene_id "RvY_13422"; transcript_id "RvY_13422.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 42683 42898 . + . gene_id "RvY_13422"; transcript_id "RvY_13422.1"; Scaffold009 rebuild transcript 44746 45684 . - . gene_id "RvY_13423"; transcript_id "RvY_13423.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 44746 45684 . - . gene_id "RvY_13423"; transcript_id "RvY_13423.1"; Scaffold009 rebuild transcript 47765 49719 . - . gene_id "RvY_13424"; transcript_id "RvY_13424.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 47765 48249 . - . gene_id "RvY_13424"; transcript_id "RvY_13424.1"; Scaffold009 rebuild exon 49053 49303 . - . gene_id "RvY_13424"; transcript_id "RvY_13424.1"; Scaffold009 rebuild exon 49378 49561 . - . gene_id "RvY_13424"; transcript_id "RvY_13424.1"; Scaffold009 rebuild exon 49635 49719 . - . gene_id "RvY_13424"; transcript_id "RvY_13424.1"; Scaffold009 rebuild transcript 49314 49679 . + . gene_id "RvY_13425"; transcript_id "RvY_13425.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 49314 49679 . + . gene_id "RvY_13425"; transcript_id "RvY_13425.1"; Scaffold009 rebuild transcript 50491 53566 . - . gene_id "RvY_13426"; transcript_id "RvY_13426.1"; gene_name "BAG3"; annotation "BCL2-associated athanogene 3"; Pfam "[BAG]"; KO "K09557"; Scaffold009 rebuild exon 50491 51380 . - . gene_id "RvY_13426"; transcript_id "RvY_13426.1"; Scaffold009 rebuild exon 51801 52332 . - . gene_id "RvY_13426"; transcript_id "RvY_13426.1"; Scaffold009 rebuild exon 53396 53566 . - . gene_id "RvY_13426"; transcript_id "RvY_13426.1"; Scaffold009 rebuild transcript 55412 56378 . - . gene_id "RvY_13427"; transcript_id "RvY_13427.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 55412 55827 . - . gene_id "RvY_13427"; transcript_id "RvY_13427.1"; Scaffold009 rebuild exon 56255 56378 . - . gene_id "RvY_13427"; transcript_id "RvY_13427.1"; Scaffold009 rebuild transcript 60414 62906 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; gene_name "PBP1_NPR_GC_like"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; CDD "Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family."; Scaffold009 rebuild exon 60414 60603 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 60670 60763 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 60851 60998 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 61113 61346 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 61467 61685 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 61754 61792 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 61859 61902 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 61972 62270 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 62378 62441 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild exon 62522 62906 . - . gene_id "RvY_13429"; transcript_id "RvY_13429.1"; Scaffold009 rebuild transcript 64287 65700 . - . gene_id "RvY_13430"; transcript_id "RvY_13430.1"; gene_name "CYB561"; annotation "cytochrome b-561"; Pfam "[Cytochrom_B561] Eukaryotic cytochrome b561"; KO "K08360"; similar_genes "CY561_BOVIN(e-value:7.0e-14;bit-score:75.0)"; Scaffold009 rebuild exon 64287 64446 . - . gene_id "RvY_13430"; transcript_id "RvY_13430.1"; Scaffold009 rebuild exon 64522 64676 . - . gene_id "RvY_13430"; transcript_id "RvY_13430.1"; Scaffold009 rebuild exon 64949 65178 . - . gene_id "RvY_13430"; transcript_id "RvY_13430.1"; Scaffold009 rebuild exon 65460 65700 . - . gene_id "RvY_13430"; transcript_id "RvY_13430.1"; Scaffold009 rebuild transcript 67796 70092 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; gene_name "(2)COG3889"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; CDD "(2)Predicted solute binding protein [General function prediction only]"; similar_genes "DAN4_YEAST(e-value:3.6e-13;bit-score:73.0)"; Scaffold009 rebuild exon 67796 67986 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild exon 68050 68199 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild exon 68402 68569 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild exon 68641 68820 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild exon 68887 69638 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild exon 69829 69949 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild exon 70014 70092 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.1"; Scaffold009 rebuild transcript 68573 70092 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.2"; gene_name "(2)COG3889"; annotation "hypothetical protein."; Pfam "[Sod_Cu] Copper/zinc superoxide dismutase (SODC)"; CDD "(2)Predicted solute binding protein [General function prediction only]"; similar_genes "DAN4_YEAST(e-value:3.6e-13;bit-score:73.0)"; Scaffold009 rebuild exon 68573 68820 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.2"; Scaffold009 rebuild exon 68887 69638 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.2"; Scaffold009 rebuild exon 69829 69949 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.2"; Scaffold009 rebuild exon 70014 70092 . - . gene_id "RvY_13431"; transcript_id "RvY_13431.2"; Scaffold009 rebuild transcript 68081 68779 . + . gene_id "RvY_13432"; transcript_id "RvY_13432.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 68081 68221 . + . gene_id "RvY_13432"; transcript_id "RvY_13432.1"; Scaffold009 rebuild exon 68522 68779 . + . gene_id "RvY_13432"; transcript_id "RvY_13432.1"; Scaffold009 rebuild transcript 70637 72378 . - . gene_id "RvY_13433"; transcript_id "RvY_13433.1"; gene_name "WD40"; annotation "putative DDB1- and CUL4-associated factor 7"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "DCAF7_HUMAN(e-value:1.1e-48;bit-score:191.0)"; Scaffold009 rebuild exon 70637 70860 . - . gene_id "RvY_13433"; transcript_id "RvY_13433.1"; Scaffold009 rebuild exon 71100 71426 . - . gene_id "RvY_13433"; transcript_id "RvY_13433.1"; Scaffold009 rebuild exon 71497 71889 . - . gene_id "RvY_13433"; transcript_id "RvY_13433.1"; Scaffold009 rebuild exon 72162 72378 . - . gene_id "RvY_13433"; transcript_id "RvY_13433.1"; Scaffold009 rebuild transcript 72852 74507 . + . gene_id "RvY_13434"; transcript_id "RvY_13434.1"; gene_name "ACTR6"; annotation "actin-related protein 6"; Pfam "[Actin]"; CDD "Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins."; KO "K11662"; similar_genes "ARP6_MOUSE(e-value:2.0e-07;bit-score:54.0)"; Scaffold009 rebuild exon 72852 73251 . + . gene_id "RvY_13434"; transcript_id "RvY_13434.1"; Scaffold009 rebuild exon 73458 73920 . + . gene_id "RvY_13434"; transcript_id "RvY_13434.1"; Scaffold009 rebuild exon 74117 74507 . + . gene_id "RvY_13434"; transcript_id "RvY_13434.1"; Scaffold009 rebuild transcript 74891 84352 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; gene_name "CLIP2"; annotation "CAP-Gly domain-containing linker protein 2"; Pfam "[CAP_GLY] CAP-Gly domain"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; KO "K10422"; similar_genes "CL190_DROME(e-value:2.9e-23;bit-score:106.0)"; Scaffold009 rebuild exon 74891 75161 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 75428 75573 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 75683 75950 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 76310 76823 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 77085 77343 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 77659 77824 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 77899 78104 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 78362 78707 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 78974 79078 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 79153 79403 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 79677 79842 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 80257 80628 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 80958 81094 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 81181 81382 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 81483 81739 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 81884 82043 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 82243 82539 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 83019 83196 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 83270 83460 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 83732 83951 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild exon 84214 84352 . - . gene_id "RvY_13435"; transcript_id "RvY_13435.1"; Scaffold009 rebuild transcript 86522 88170 . + . gene_id "RvY_13436"; transcript_id "RvY_13436.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold009 rebuild exon 86522 86572 . + . gene_id "RvY_13436"; transcript_id "RvY_13436.1"; Scaffold009 rebuild exon 86654 87518 . + . gene_id "RvY_13436"; transcript_id "RvY_13436.1"; Scaffold009 rebuild exon 87598 87712 . + . gene_id "RvY_13436"; transcript_id "RvY_13436.1"; Scaffold009 rebuild exon 87909 88170 . + . gene_id "RvY_13436"; transcript_id "RvY_13436.1"; Scaffold009 rebuild transcript 88458 90163 . + . gene_id "RvY_13437"; transcript_id "RvY_13437.1"; gene_name "NhaP"; annotation "hypothetical protein."; Pfam "[Na_H_Exchanger] Sodium/hydrogen exchanger family"; CDD "NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]"; Scaffold009 rebuild exon 88458 89076 . + . gene_id "RvY_13437"; transcript_id "RvY_13437.1"; Scaffold009 rebuild exon 89440 89592 . + . gene_id "RvY_13437"; transcript_id "RvY_13437.1"; Scaffold009 rebuild exon 89655 89831 . + . gene_id "RvY_13437"; transcript_id "RvY_13437.1"; Scaffold009 rebuild exon 89943 90163 . + . gene_id "RvY_13437"; transcript_id "RvY_13437.1"; Scaffold009 rebuild transcript 91072 92613 . - . gene_id "RvY_13438"; transcript_id "RvY_13438.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_Tnp_Tc5] Tc5 transposase DNA-binding domain"; Scaffold009 rebuild exon 91072 91655 . - . gene_id "RvY_13438"; transcript_id "RvY_13438.1"; Scaffold009 rebuild exon 91734 91985 . - . gene_id "RvY_13438"; transcript_id "RvY_13438.1"; Scaffold009 rebuild exon 92074 92410 . - . gene_id "RvY_13438"; transcript_id "RvY_13438.1"; Scaffold009 rebuild exon 92497 92613 . - . gene_id "RvY_13438"; transcript_id "RvY_13438.1"; Scaffold009 rebuild transcript 96987 98606 . + . gene_id "RvY_13439"; transcript_id "RvY_13439.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 96987 97001 . + . gene_id "RvY_13439"; transcript_id "RvY_13439.1"; Scaffold009 rebuild exon 97250 97474 . + . gene_id "RvY_13439"; transcript_id "RvY_13439.1"; Scaffold009 rebuild exon 97547 97681 . + . gene_id "RvY_13439"; transcript_id "RvY_13439.1"; Scaffold009 rebuild exon 97842 97918 . + . gene_id "RvY_13439"; transcript_id "RvY_13439.1"; Scaffold009 rebuild exon 98180 98606 . + . gene_id "RvY_13439"; transcript_id "RvY_13439.1"; Scaffold009 rebuild transcript 98704 100182 . - . gene_id "RvY_13440"; transcript_id "RvY_13440.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 98704 98828 . - . gene_id "RvY_13440"; transcript_id "RvY_13440.1"; Scaffold009 rebuild exon 100020 100182 . - . gene_id "RvY_13440"; transcript_id "RvY_13440.1"; Scaffold009 rebuild transcript 103139 105381 . + . gene_id "RvY_13441"; transcript_id "RvY_13441.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 103139 103290 . + . gene_id "RvY_13441"; transcript_id "RvY_13441.1"; Scaffold009 rebuild exon 103527 103975 . + . gene_id "RvY_13441"; transcript_id "RvY_13441.1"; Scaffold009 rebuild exon 104123 104480 . + . gene_id "RvY_13441"; transcript_id "RvY_13441.1"; Scaffold009 rebuild exon 104561 105027 . + . gene_id "RvY_13441"; transcript_id "RvY_13441.1"; Scaffold009 rebuild exon 105197 105381 . + . gene_id "RvY_13441"; transcript_id "RvY_13441.1"; Scaffold009 rebuild transcript 105943 107112 . + . gene_id "RvY_13442"; transcript_id "RvY_13442.1"; gene_name "FtsJ"; annotation "hypothetical protein."; Pfam "[FtsJ] FtsJ-like methyltransferase"; CDD "23S rRNA methylase [Translation, ribosomal structure and biogenesis]"; EC "EC2.1.1.-"; KO "K14864"; similar_genes "RMJ1A_DROME(e-value:4.3e-20;bit-score:96.0)"; Scaffold009 rebuild exon 105943 106133 . + . gene_id "RvY_13442"; transcript_id "RvY_13442.1"; Scaffold009 rebuild exon 106187 106555 . + . gene_id "RvY_13442"; transcript_id "RvY_13442.1"; Scaffold009 rebuild exon 106887 107112 . + . gene_id "RvY_13442"; transcript_id "RvY_13442.1"; Scaffold009 rebuild transcript 107268 107858 . + . gene_id "RvY_13443"; transcript_id "RvY_13443.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 107268 107858 . + . gene_id "RvY_13443"; transcript_id "RvY_13443.1"; Scaffold009 rebuild transcript 108548 110878 . + . gene_id "RvY_13444"; transcript_id "RvY_13444.1"; gene_name "QCR2"; annotation "ubiquinol-cytochrome c reductase core subunit 2 [EC:1.10.2.2]"; Pfam "[Peptidase_M16_C] Peptidase M16 inactive domain|[Peptidase_M16] Insulinase (Peptidase family M16)"; CDD "Predicted Zn-dependent peptidases [General function prediction only]"; EC "EC1.10.2.2"; KO "K00415"; Scaffold009 rebuild exon 108548 108730 . + . gene_id "RvY_13444"; transcript_id "RvY_13444.1"; Scaffold009 rebuild exon 109012 109506 . + . gene_id "RvY_13444"; transcript_id "RvY_13444.1"; Scaffold009 rebuild exon 109778 110364 . + . gene_id "RvY_13444"; transcript_id "RvY_13444.1"; Scaffold009 rebuild exon 110638 110878 . + . gene_id "RvY_13444"; transcript_id "RvY_13444.1"; Scaffold009 rebuild transcript 111212 111937 . - . gene_id "RvY_13445"; transcript_id "RvY_13445.1"; gene_name "ALG13"; annotation "beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]"; Pfam "[Glyco_trans_1_3] Glycosyl transferase family 1|[Glyco_tran_28_C] Glycosyltransferase family 28 C-terminal domain"; EC "EC2.4.1.141"; KO "K07432"; similar_genes "ALG13_HUMAN(e-value:8.0e-13;bit-score:72.0)"; Scaffold009 rebuild exon 111212 111459 . - . gene_id "RvY_13445"; transcript_id "RvY_13445.1"; Scaffold009 rebuild exon 111540 111702 . - . gene_id "RvY_13445"; transcript_id "RvY_13445.1"; Scaffold009 rebuild exon 111842 111937 . - . gene_id "RvY_13445"; transcript_id "RvY_13445.1"; Scaffold009 rebuild transcript 112299 114361 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.1"; gene_name "Sun"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[Nol1_Nop2_Fmu] NOL1/NOP2/sun family"; CDD "tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]"; EC "EC2.1.1.-"; similar_genes "(1)NSUN3_DANRE(e-value:2.4e-12;bit-score:70.0)(2)NSUN4_BOVIN(e-value:1.6e-11;bit-score:67.0)"; Scaffold009 rebuild exon 112299 112439 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.1"; Scaffold009 rebuild exon 112508 113132 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.1"; Scaffold009 rebuild exon 113260 113391 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.1"; Scaffold009 rebuild exon 113465 113753 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.1"; Scaffold009 rebuild exon 114079 114361 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.1"; Scaffold009 rebuild transcript 112176 113399 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.2"; gene_name "Sun"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[Nol1_Nop2_Fmu] NOL1/NOP2/sun family"; CDD "tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]"; EC "EC2.1.1.-"; similar_genes "(1)NSUN3_DANRE(e-value:2.4e-12;bit-score:70.0)(2)NSUN4_BOVIN(e-value:1.6e-11;bit-score:67.0)"; Scaffold009 rebuild exon 112176 112439 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.2"; Scaffold009 rebuild exon 112508 113132 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.2"; Scaffold009 rebuild exon 113260 113399 . + . gene_id "RvY_13446"; transcript_id "RvY_13446.2"; Scaffold009 rebuild transcript 114598 117672 . + . gene_id "RvY_13447"; transcript_id "RvY_13447.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; Scaffold009 rebuild exon 114598 114850 . + . gene_id "RvY_13447"; transcript_id "RvY_13447.1"; Scaffold009 rebuild exon 114983 115175 . + . gene_id "RvY_13447"; transcript_id "RvY_13447.1"; Scaffold009 rebuild exon 115611 115929 . + . gene_id "RvY_13447"; transcript_id "RvY_13447.1"; Scaffold009 rebuild exon 116312 116808 . + . gene_id "RvY_13447"; transcript_id "RvY_13447.1"; Scaffold009 rebuild exon 117198 117672 . + . gene_id "RvY_13447"; transcript_id "RvY_13447.1"; Scaffold009 rebuild transcript 118200 121027 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 118200 118217 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; Scaffold009 rebuild exon 118284 118603 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; Scaffold009 rebuild exon 118789 119059 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; Scaffold009 rebuild exon 119347 119626 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; Scaffold009 rebuild exon 119939 120338 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; Scaffold009 rebuild exon 120685 121027 . + . gene_id "RvY_13448"; transcript_id "RvY_13448.1"; Scaffold009 rebuild transcript 124847 125373 . - . gene_id "RvY_13449"; transcript_id "RvY_13449.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 124847 125005 . - . gene_id "RvY_13449"; transcript_id "RvY_13449.1"; Scaffold009 rebuild exon 125092 125373 . - . gene_id "RvY_13449"; transcript_id "RvY_13449.1"; Scaffold009 rebuild transcript 125505 125989 . + . gene_id "RvY_13450"; transcript_id "RvY_13450.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 125505 125574 . + . gene_id "RvY_13450"; transcript_id "RvY_13450.1"; Scaffold009 rebuild exon 125757 125989 . + . gene_id "RvY_13450"; transcript_id "RvY_13450.1"; Scaffold009 rebuild transcript 130260 131456 . - . gene_id "RvY_13451"; transcript_id "RvY_13451.1"; annotation "hypothetical protein."; Pfam "[Chromo] Chromo (CHRromatin Organisation MOdifier) domain"; Scaffold009 rebuild exon 130260 130756 . - . gene_id "RvY_13451"; transcript_id "RvY_13451.1"; Scaffold009 rebuild exon 130813 131197 . - . gene_id "RvY_13451"; transcript_id "RvY_13451.1"; Scaffold009 rebuild exon 131424 131456 . - . gene_id "RvY_13451"; transcript_id "RvY_13451.1"; Scaffold009 rebuild transcript 135121 135985 . - . gene_id "RvY_13452"; transcript_id "RvY_13452.1"; gene_name "Rho"; annotation "putative Rho-related GTP-binding protein RhoC"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Gtr1_RagA] Gtr1/RagA G protein conserved region|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; similar_genes "RHOC_HUMAN(e-value:4.5e-43;bit-score:172.0)"; Scaffold009 rebuild exon 135121 135309 . - . gene_id "RvY_13452"; transcript_id "RvY_13452.1"; Scaffold009 rebuild exon 135383 135475 . - . gene_id "RvY_13452"; transcript_id "RvY_13452.1"; Scaffold009 rebuild exon 135547 135696 . - . gene_id "RvY_13452"; transcript_id "RvY_13452.1"; Scaffold009 rebuild exon 135815 135985 . - . gene_id "RvY_13452"; transcript_id "RvY_13452.1"; Scaffold009 rebuild transcript 136347 138444 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; gene_name "(1)PPCDC(2)PRK07313"; annotation "(1)phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36](2)hypothetical protein."; Pfam "[Flavoprotein]"; CDD "phosphopantothenoylcysteine decarboxylase; Validated"; EC "(1)EC4.1.1.36"; KO "(1)K01598"; Scaffold009 rebuild exon 136347 136481 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; Scaffold009 rebuild exon 136565 136693 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; Scaffold009 rebuild exon 136801 137315 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; Scaffold009 rebuild exon 137678 137879 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; Scaffold009 rebuild exon 138086 138226 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; Scaffold009 rebuild exon 138280 138444 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.1"; Scaffold009 rebuild transcript 136693 138142 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.2"; gene_name "(1)PPCDC(2)PRK07313"; annotation "(1)phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36](2)hypothetical protein."; Pfam "[Flavoprotein]"; CDD "phosphopantothenoylcysteine decarboxylase; Validated"; EC "(1)EC4.1.1.36"; KO "(1)K01598"; Scaffold009 rebuild exon 136693 136693 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.2"; Scaffold009 rebuild exon 136805 137315 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.2"; Scaffold009 rebuild exon 137678 137879 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.2"; Scaffold009 rebuild exon 138086 138142 . - . gene_id "RvY_13453"; transcript_id "RvY_13453.2"; Scaffold009 rebuild transcript 139185 140261 . - . gene_id "RvY_13454"; transcript_id "RvY_13454.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 139185 140261 . - . gene_id "RvY_13454"; transcript_id "RvY_13454.1"; Scaffold009 rebuild transcript 142135 144549 . - . gene_id "RvY_13455"; transcript_id "RvY_13455.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 142135 142666 . - . gene_id "RvY_13455"; transcript_id "RvY_13455.1"; Scaffold009 rebuild exon 142806 143164 . - . gene_id "RvY_13455"; transcript_id "RvY_13455.1"; Scaffold009 rebuild exon 143473 144026 . - . gene_id "RvY_13455"; transcript_id "RvY_13455.1"; Scaffold009 rebuild exon 144306 144549 . - . gene_id "RvY_13455"; transcript_id "RvY_13455.1"; Scaffold009 rebuild transcript 144931 145595 . + . gene_id "RvY_13456"; transcript_id "RvY_13456.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 144931 145087 . + . gene_id "RvY_13456"; transcript_id "RvY_13456.1"; Scaffold009 rebuild exon 145543 145595 . + . gene_id "RvY_13456"; transcript_id "RvY_13456.1"; Scaffold009 rebuild transcript 148029 148556 . - . gene_id "RvY_13457"; transcript_id "RvY_13457.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 148029 148169 . - . gene_id "RvY_13457"; transcript_id "RvY_13457.1"; Scaffold009 rebuild exon 148260 148556 . - . gene_id "RvY_13457"; transcript_id "RvY_13457.1"; Scaffold009 rebuild transcript 149867 155646 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; annotation "putative Multiple epidermal growth factor-like domains protein 10"; similar_genes "MEG10_XENTR(e-value:6.8e-27;bit-score:118.0)"; Scaffold009 rebuild exon 149867 149970 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild exon 150036 150233 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild exon 151264 151857 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild exon 152317 152599 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild exon 152935 153290 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild exon 153478 153677 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild exon 155522 155646 . - . gene_id "RvY_13458"; transcript_id "RvY_13458.1"; Scaffold009 rebuild transcript 157444 158663 . + . gene_id "RvY_13459"; transcript_id "RvY_13459.1"; annotation "hypothetical protein."; Pfam "[Med19] Mediator of RNA pol II transcription subunit 19"; KO "K15137"; Scaffold009 rebuild exon 157444 157654 . + . gene_id "RvY_13459"; transcript_id "RvY_13459.1"; Scaffold009 rebuild exon 157716 157975 . + . gene_id "RvY_13459"; transcript_id "RvY_13459.1"; Scaffold009 rebuild exon 158222 158321 . + . gene_id "RvY_13459"; transcript_id "RvY_13459.1"; Scaffold009 rebuild exon 158427 158521 . + . gene_id "RvY_13459"; transcript_id "RvY_13459.1"; Scaffold009 rebuild exon 158619 158663 . + . gene_id "RvY_13459"; transcript_id "RvY_13459.1"; Scaffold009 rebuild transcript 159100 164182 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; annotation "putative Breast carcinoma-amplified sequence 3 homolog"; Pfam "[BCAS3] Breast carcinoma amplified sequence 3"; similar_genes "BCAS3_DROME(e-value:1.2e-30;bit-score:131.0)"; Scaffold009 rebuild exon 159100 159197 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 159275 159493 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 159578 159672 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 159823 160191 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 160479 160645 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 160709 160912 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 161165 161448 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 161999 162326 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 162385 162555 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 162659 162739 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 162804 162880 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 162946 163022 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 163089 163263 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 163531 163686 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 163755 163833 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 163956 164016 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild exon 164106 164182 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.1"; Scaffold009 rebuild transcript 160649 163958 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; annotation "putative Breast carcinoma-amplified sequence 3 homolog"; Pfam "[BCAS3] Breast carcinoma amplified sequence 3"; similar_genes "BCAS3_DROME(e-value:1.2e-30;bit-score:131.0)"; Scaffold009 rebuild exon 160649 160912 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 161165 161448 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 161999 162326 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 162385 162555 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 162659 162739 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 162804 162880 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 162946 163022 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 163089 163263 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 163531 163686 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 163755 163833 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild exon 163956 163958 . - . gene_id "RvY_13460"; transcript_id "RvY_13460.2"; Scaffold009 rebuild transcript 164557 170549 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; gene_name "(1)rad3"; annotation "hypothetical protein."; Pfam "[DEAD_2]|(1)[Helicase_C_2] Helicase C-terminal domain"; CDD "(1)DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "(1)K15362"; similar_genes "FANCJ_CHICK(e-value:2.2e-19;bit-score:93.0)"; Scaffold009 rebuild exon 164557 165003 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 165069 165195 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 165442 165659 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 165785 165999 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 166074 166166 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 166246 166273 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 166372 166479 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 166569 166691 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 166760 166927 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 167195 167587 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 167890 168163 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 168242 168329 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 168587 168782 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 168850 169116 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 169360 169459 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 169524 169631 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild exon 170326 170549 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.1"; Scaffold009 rebuild transcript 164557 168862 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; gene_name "(1)rad3"; annotation "hypothetical protein."; Pfam "[DEAD_2]|(1)[Helicase_C_2] Helicase C-terminal domain"; CDD "(1)DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.6.1.-"; KO "(1)K15362"; similar_genes "FANCJ_CHICK(e-value:2.2e-19;bit-score:93.0)"; Scaffold009 rebuild exon 164557 165003 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 165069 165195 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 165442 165659 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 165785 165999 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 166074 166166 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 166246 166273 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 166372 166479 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 166569 166691 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 166760 166927 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 167195 167587 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 167890 168163 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 168242 168329 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild exon 168850 168862 . + . gene_id "RvY_13461"; transcript_id "RvY_13461.2"; Scaffold009 rebuild transcript 170856 172238 . - . gene_id "RvY_13462"; transcript_id "RvY_13462.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 170856 170954 . - . gene_id "RvY_13462"; transcript_id "RvY_13462.1"; Scaffold009 rebuild exon 172194 172238 . - . gene_id "RvY_13462"; transcript_id "RvY_13462.1"; Scaffold009 rebuild transcript 177127 177753 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.1"; gene_name "(2)TBOX"; annotation "hypothetical protein."; Pfam "[T-box]"; CDD "(2)Domain first found in the mice T locus (Brachyury) protein."; similar_genes "(2)TBX2B_XENLA(e-value:8.7e-06;bit-score:48.0)"; Scaffold009 rebuild exon 177127 177753 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.1"; Scaffold009 rebuild transcript 177127 177869 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.2"; gene_name "(2)TBOX"; annotation "hypothetical protein."; Pfam "[T-box]"; CDD "(2)Domain first found in the mice T locus (Brachyury) protein."; similar_genes "(2)TBX2B_XENLA(e-value:8.7e-06;bit-score:48.0)"; Scaffold009 rebuild exon 177127 177679 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.2"; Scaffold009 rebuild exon 177847 177869 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.2"; Scaffold009 rebuild transcript 177127 177768 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.3"; gene_name "(2)TBOX"; annotation "hypothetical protein."; Pfam "[T-box]"; CDD "(2)Domain first found in the mice T locus (Brachyury) protein."; similar_genes "(2)TBX2B_XENLA(e-value:8.7e-06;bit-score:48.0)"; Scaffold009 rebuild exon 177127 177679 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.3"; Scaffold009 rebuild exon 177764 177768 . + . gene_id "RvY_13463"; transcript_id "RvY_13463.3"; Scaffold009 rebuild transcript 181708 187668 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; gene_name "(1)TBX3(2)TBX2"; annotation "T-box transcription factor TBX2"; Pfam "[T-box]"; CDD "T-box. The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations."; KO "(1)K10177(2)K10176"; similar_genes "(1)TBX2_HUMAN(e-value:5.1e-78;bit-score:288.0)(2)TBX2_HUMAN(e-value:3.0e-80;bit-score:296.0)"; Scaffold009 rebuild exon 181708 181799 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild exon 182386 182581 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild exon 185448 185571 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild exon 185653 185675 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild exon 185743 185819 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild exon 186170 186408 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild exon 186842 187668 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.1"; Scaffold009 rebuild transcript 181708 187668 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; gene_name "(1)TBX3(2)TBX2"; annotation "T-box transcription factor TBX2"; Pfam "[T-box]"; CDD "T-box. The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations."; KO "(1)K10177(2)K10176"; similar_genes "(1)TBX2_HUMAN(e-value:5.1e-78;bit-score:288.0)(2)TBX2_HUMAN(e-value:3.0e-80;bit-score:296.0)"; Scaffold009 rebuild exon 181708 181799 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild exon 182386 182557 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild exon 185448 185571 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild exon 185653 185675 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild exon 185743 185819 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild exon 186170 186408 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild exon 186842 187668 . + . gene_id "RvY_13464"; transcript_id "RvY_13464.2"; Scaffold009 rebuild transcript 187885 189646 . - . gene_id "RvY_13465"; transcript_id "RvY_13465.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold009 rebuild exon 187885 188104 . - . gene_id "RvY_13465"; transcript_id "RvY_13465.1"; Scaffold009 rebuild exon 188410 188636 . - . gene_id "RvY_13465"; transcript_id "RvY_13465.1"; Scaffold009 rebuild exon 188832 188983 . - . gene_id "RvY_13465"; transcript_id "RvY_13465.1"; Scaffold009 rebuild exon 189074 189347 . - . gene_id "RvY_13465"; transcript_id "RvY_13465.1"; Scaffold009 rebuild exon 189428 189646 . - . gene_id "RvY_13465"; transcript_id "RvY_13465.1"; Scaffold009 rebuild transcript 190377 194542 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease|[HTH_psq] helix-turn-helix, Psq domain"; Scaffold009 rebuild exon 190377 190384 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; Scaffold009 rebuild exon 192473 192795 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; Scaffold009 rebuild exon 192879 193387 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; Scaffold009 rebuild exon 193524 193745 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; Scaffold009 rebuild exon 193958 194242 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; Scaffold009 rebuild exon 194270 194542 . + . gene_id "RvY_13466"; transcript_id "RvY_13466.1"; Scaffold009 rebuild transcript 197867 198064 . - . gene_id "RvY_13467"; transcript_id "RvY_13467.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 197867 198064 . - . gene_id "RvY_13467"; transcript_id "RvY_13467.1"; Scaffold009 rebuild transcript 198652 199305 . + . gene_id "RvY_13468"; transcript_id "RvY_13468.1"; annotation "hypothetical protein."; Pfam "[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_10] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; Scaffold009 rebuild exon 198652 199305 . + . gene_id "RvY_13468"; transcript_id "RvY_13468.1"; Scaffold009 rebuild transcript 199485 201452 . - . gene_id "RvY_13469"; transcript_id "RvY_13469.1"; gene_name "2A0113"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily"; CDD "monocarboxylate transporter 1."; Scaffold009 rebuild exon 199485 199624 . - . gene_id "RvY_13469"; transcript_id "RvY_13469.1"; Scaffold009 rebuild exon 199912 200664 . - . gene_id "RvY_13469"; transcript_id "RvY_13469.1"; Scaffold009 rebuild exon 200939 201452 . - . gene_id "RvY_13469"; transcript_id "RvY_13469.1"; Scaffold009 rebuild transcript 201921 203766 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; gene_name "PRKAR"; annotation "cAMP-dependent protein kinase regulator"; Pfam "[cNMP_binding] Cyclic nucleotide-binding domain"; CDD "effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels"; KO "K04739"; similar_genes "KAPR_STRPU(e-value:5.6e-20;bit-score:95.0)"; Scaffold009 rebuild exon 201921 202228 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; Scaffold009 rebuild exon 202544 202721 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; Scaffold009 rebuild exon 202804 203040 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; Scaffold009 rebuild exon 203101 203255 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; Scaffold009 rebuild exon 203367 203499 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; Scaffold009 rebuild exon 203614 203766 . - . gene_id "RvY_13470"; transcript_id "RvY_13470.1"; Scaffold009 rebuild transcript 203958 205849 . + . gene_id "RvY_13471"; transcript_id "RvY_13471.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 203958 204723 . + . gene_id "RvY_13471"; transcript_id "RvY_13471.1"; Scaffold009 rebuild exon 204963 205849 . + . gene_id "RvY_13471"; transcript_id "RvY_13471.1"; Scaffold009 rebuild transcript 206237 206672 . - . gene_id "RvY_13472"; transcript_id "RvY_13472.1"; gene_name "LSM8"; annotation "U6 snRNA-associated Sm-like protein LSm8"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K12627"; similar_genes "LSM8_HUMAN(e-value:2.5e-20;bit-score:97.0)"; Scaffold009 rebuild exon 206237 206327 . - . gene_id "RvY_13472"; transcript_id "RvY_13472.1"; Scaffold009 rebuild exon 206403 206530 . - . gene_id "RvY_13472"; transcript_id "RvY_13472.1"; Scaffold009 rebuild exon 206592 206672 . - . gene_id "RvY_13472"; transcript_id "RvY_13472.1"; Scaffold009 rebuild transcript 207099 209437 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.1"; annotation "hypothetical protein."; Pfam "[DUF155] Uncharacterised ACR, YagE family COG1723"; similar_genes "RMND1_PONAB(e-value:4.9e-19;bit-score:92.0)"; Scaffold009 rebuild exon 207099 207173 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.1"; Scaffold009 rebuild exon 207365 207944 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.1"; Scaffold009 rebuild exon 208289 208519 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.1"; Scaffold009 rebuild exon 208606 208670 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.1"; Scaffold009 rebuild exon 209006 209437 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.1"; Scaffold009 rebuild transcript 207122 209437 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.2"; annotation "hypothetical protein."; Pfam "[DUF155] Uncharacterised ACR, YagE family COG1723"; similar_genes "RMND1_PONAB(e-value:4.9e-19;bit-score:92.0)"; Scaffold009 rebuild exon 207122 207173 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.2"; Scaffold009 rebuild exon 207369 207944 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.2"; Scaffold009 rebuild exon 208289 208519 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.2"; Scaffold009 rebuild exon 208606 208670 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.2"; Scaffold009 rebuild exon 209006 209437 . + . gene_id "RvY_13473"; transcript_id "RvY_13473.2"; Scaffold009 rebuild transcript 209797 210190 . - . gene_id "RvY_13474"; transcript_id "RvY_13474.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 209797 210038 . - . gene_id "RvY_13474"; transcript_id "RvY_13474.1"; Scaffold009 rebuild exon 210121 210190 . - . gene_id "RvY_13474"; transcript_id "RvY_13474.1"; Scaffold009 rebuild transcript 211097 212651 . - . gene_id "RvY_13475"; transcript_id "RvY_13475.1"; gene_name "HSPB1"; annotation "heat shock 27kDa protein 1"; Pfam "[HSP20] Hsp20/alpha crystallin family"; CDD "Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally Scaffold009 rebuild exon 211097 211761 . - . gene_id "RvY_13475"; transcript_id "RvY_13475.1"; Scaffold009 rebuild exon 212261 212651 . - . gene_id "RvY_13475"; transcript_id "RvY_13475.1"; Scaffold009 rebuild transcript 214040 214891 . + . gene_id "RvY_13476"; transcript_id "RvY_13476.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 214040 214411 . + . gene_id "RvY_13476"; transcript_id "RvY_13476.1"; Scaffold009 rebuild exon 214670 214891 . + . gene_id "RvY_13476"; transcript_id "RvY_13476.1"; Scaffold009 rebuild transcript 215300 217058 . - . gene_id "RvY_13477"; transcript_id "RvY_13477.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 215300 215592 . - . gene_id "RvY_13477"; transcript_id "RvY_13477.1"; Scaffold009 rebuild exon 216011 216220 . - . gene_id "RvY_13477"; transcript_id "RvY_13477.1"; Scaffold009 rebuild exon 216449 217058 . - . gene_id "RvY_13477"; transcript_id "RvY_13477.1"; Scaffold009 rebuild transcript 219367 220645 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.1"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "BSH_HUMAN(e-value:1.4e-18;bit-score:91.0)"; Scaffold009 rebuild exon 219367 219706 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.1"; Scaffold009 rebuild exon 219787 219933 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.1"; Scaffold009 rebuild exon 220148 220359 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.1"; Scaffold009 rebuild exon 220430 220645 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.1"; Scaffold009 rebuild transcript 219367 220368 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.2"; annotation "hypothetical protein."; Pfam "[Homeobox]"; similar_genes "BSH_HUMAN(e-value:1.4e-18;bit-score:91.0)"; Scaffold009 rebuild exon 219367 219706 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.2"; Scaffold009 rebuild exon 219787 219933 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.2"; Scaffold009 rebuild exon 220148 220368 . + . gene_id "RvY_13478"; transcript_id "RvY_13478.2"; Scaffold009 rebuild transcript 221352 225082 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; gene_name "dass"; annotation "hypothetical protein."; Pfam "[Na_sulph_symp] Sodium:sulfate symporter transmembrane region|[CitMHS] Citrate transporter"; CDD "anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+."; similar_genes "S13A3_RAT(e-value:1.1e-14;bit-score:78.0)"; Scaffold009 rebuild exon 221352 221474 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 221542 221691 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 221970 222262 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 222622 223020 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 223362 223583 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 223670 223774 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 223988 224174 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 224242 224403 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild exon 224681 225082 . + . gene_id "RvY_13479"; transcript_id "RvY_13479.1"; Scaffold009 rebuild transcript 225374 228313 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; gene_name "Na_sulph_symp"; annotation "hypothetical protein."; Pfam "[Na_sulph_symp] Sodium:sulfate symporter transmembrane region|[CitMHS] Citrate transporter"; CDD "Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1."; Scaffold009 rebuild exon 225374 225487 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 225574 225723 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 225780 225954 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 226088 226478 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 226747 226953 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 227014 227118 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 227347 227695 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild exon 227930 228313 . + . gene_id "RvY_13480"; transcript_id "RvY_13480.1"; Scaffold009 rebuild transcript 228473 231456 . - . gene_id "RvY_13481"; transcript_id "RvY_13481.1"; gene_name "MNT"; annotation "MAX-binding protein"; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; KO "K09115"; Scaffold009 rebuild exon 228473 229336 . - . gene_id "RvY_13481"; transcript_id "RvY_13481.1"; Scaffold009 rebuild exon 230684 230798 . - . gene_id "RvY_13481"; transcript_id "RvY_13481.1"; Scaffold009 rebuild exon 230932 230988 . - . gene_id "RvY_13481"; transcript_id "RvY_13481.1"; Scaffold009 rebuild exon 231119 231456 . - . gene_id "RvY_13481"; transcript_id "RvY_13481.1"; Scaffold009 rebuild transcript 235702 242257 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; gene_name "STAG1_2"; annotation "cohesin complex subunit SA-1/2"; Pfam "[STAG]"; CDD "STAG domain. STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version."; KO "K06671"; Scaffold009 rebuild exon 235702 235985 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 236218 236920 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 237107 237311 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 237487 237929 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 238188 238374 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 238527 238885 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 239235 239390 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 239737 240309 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 240745 241035 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 241127 241365 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 241442 241561 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild exon 241795 242257 . + . gene_id "RvY_13482"; transcript_id "RvY_13482.1"; Scaffold009 rebuild transcript 243982 247593 . - . gene_id "RvY_13483"; transcript_id "RvY_13483.1"; gene_name "GH20_GcnA-like"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_20] Glycosyl hydrolase family 20, catalytic domain"; CDD "Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself."; EC "EC3.2.1.52"; KO "K14459"; similar_genes "HEXDC_MOUSE(e-value:9.2e-14;bit-score:75.0)"; Scaffold009 rebuild exon 243982 244625 . - . gene_id "RvY_13483"; transcript_id "RvY_13483.1"; Scaffold009 rebuild exon 244902 245445 . - . gene_id "RvY_13483"; transcript_id "RvY_13483.1"; Scaffold009 rebuild exon 246084 246547 . - . gene_id "RvY_13483"; transcript_id "RvY_13483.1"; Scaffold009 rebuild exon 246825 247593 . - . gene_id "RvY_13483"; transcript_id "RvY_13483.1"; Scaffold009 rebuild transcript 249670 252386 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 249670 249871 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.1"; Scaffold009 rebuild exon 249937 250096 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.1"; Scaffold009 rebuild exon 251599 251744 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.1"; Scaffold009 rebuild exon 252115 252386 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.1"; Scaffold009 rebuild transcript 249670 250178 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 249670 249871 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.2"; Scaffold009 rebuild exon 249937 250178 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.2"; Scaffold009 rebuild transcript 249670 251650 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 249670 249871 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.3"; Scaffold009 rebuild exon 249937 250096 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.3"; Scaffold009 rebuild exon 251599 251650 . - . gene_id "RvY_13484"; transcript_id "RvY_13484.3"; Scaffold009 rebuild transcript 253515 255372 . + . gene_id "RvY_13485"; transcript_id "RvY_13485.1"; annotation "hypothetical protein."; Pfam "[NAP] Nucleosome assembly protein (NAP)"; Scaffold009 rebuild exon 253515 254049 . + . gene_id "RvY_13485"; transcript_id "RvY_13485.1"; Scaffold009 rebuild exon 254270 255372 . + . gene_id "RvY_13485"; transcript_id "RvY_13485.1"; Scaffold009 rebuild transcript 255894 256457 . + . gene_id "RvY_13486"; transcript_id "RvY_13486.1"; gene_name "3a0801s04tom"; annotation "hypothetical protein."; Pfam "[MAS20] MAS20 protein import receptor"; CDD "mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit."; similar_genes "TOM20_BOVIN(e-value:8.7e-06;bit-score:48.0)"; Scaffold009 rebuild exon 255894 256457 . + . gene_id "RvY_13486"; transcript_id "RvY_13486.1"; Scaffold009 rebuild transcript 257504 258423 . + . gene_id "RvY_13487"; transcript_id "RvY_13487.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 257504 257561 . + . gene_id "RvY_13487"; transcript_id "RvY_13487.1"; Scaffold009 rebuild exon 257645 257884 . + . gene_id "RvY_13487"; transcript_id "RvY_13487.1"; Scaffold009 rebuild exon 257972 258423 . + . gene_id "RvY_13487"; transcript_id "RvY_13487.1"; Scaffold009 rebuild transcript 259715 263256 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; gene_name "SSH"; annotation "slingshot"; Pfam "[DEK_C] DEK C terminal domain|[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K05766"; similar_genes "SSH_DROME(e-value:5.0e-23;bit-score:106.0)"; Scaffold009 rebuild exon 259715 259849 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; Scaffold009 rebuild exon 259912 260450 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; Scaffold009 rebuild exon 260742 261252 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; Scaffold009 rebuild exon 261523 262061 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; Scaffold009 rebuild exon 262204 262670 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; Scaffold009 rebuild exon 262916 263256 . + . gene_id "RvY_13488"; transcript_id "RvY_13488.1"; Scaffold009 rebuild transcript 264131 266960 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; gene_name "ATPeV54kD"; annotation "putative V-type proton ATPase subunit H"; Pfam "[V-ATPase_H_C] V-ATPase subunit H|[HEAT_2] HEAT repeats|[V-ATPase_H_N] V-ATPase subunit H"; CDD "VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to Scaffold009 rebuild exon 264131 264157 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 264233 264509 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 264954 265222 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 265293 265517 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 265588 265685 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 265768 265875 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 265957 266011 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 266155 266489 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 266552 266653 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 266710 266823 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild exon 266894 266960 . + . gene_id "RvY_13489"; transcript_id "RvY_13489.1"; Scaffold009 rebuild transcript 267634 270750 . + . gene_id "RvY_13490"; transcript_id "RvY_13490.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 267634 268345 . + . gene_id "RvY_13490"; transcript_id "RvY_13490.1"; Scaffold009 rebuild exon 268593 269483 . + . gene_id "RvY_13490"; transcript_id "RvY_13490.1"; Scaffold009 rebuild exon 269764 270256 . + . gene_id "RvY_13490"; transcript_id "RvY_13490.1"; Scaffold009 rebuild exon 270657 270750 . + . gene_id "RvY_13490"; transcript_id "RvY_13490.1"; Scaffold009 rebuild transcript 271500 273700 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; gene_name "CCNB"; annotation "cyclin B"; Pfam "[Cyclin_C] Cyclin, C-terminal domain|[Cyclin_N] Cyclin, N-terminal domain"; CDD "Cyclin [Cell division and chromosome partitioning]"; KO "K05868"; similar_genes "CCNB_ARBPU(e-value:1.5e-09;bit-score:61.0)"; Scaffold009 rebuild exon 271500 271592 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 271841 271945 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 272016 272168 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 272233 272475 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 272681 272741 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 272807 272901 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 272961 273227 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild exon 273584 273700 . - . gene_id "RvY_13491"; transcript_id "RvY_13491.1"; Scaffold009 rebuild transcript 273864 274064 . + . gene_id "RvY_13492"; transcript_id "RvY_13492.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 273864 274064 . + . gene_id "RvY_13492"; transcript_id "RvY_13492.1"; Scaffold009 rebuild transcript 274766 276547 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; gene_name "TFIIH3"; annotation "transcription initiation factor TFIIH subunit H3"; Pfam "[Tfb4] Transcription factor Tfb4"; KO "K03143"; similar_genes "TF2H3_BOVIN(e-value:1.3e-19;bit-score:94.0)"; Scaffold009 rebuild exon 274766 274947 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 275024 275159 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 275245 275367 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 275432 275506 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 275593 275651 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 275714 275913 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 276139 276245 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 276313 276428 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild exon 276490 276547 . - . gene_id "RvY_13493"; transcript_id "RvY_13493.1"; Scaffold009 rebuild transcript 277054 278731 . - . gene_id "RvY_13494"; transcript_id "RvY_13494.1"; annotation "hypothetical protein."; similar_genes "TMEM5_HUMAN(e-value:4.6e-11;bit-score:66.0)"; Scaffold009 rebuild exon 277054 277449 . - . gene_id "RvY_13494"; transcript_id "RvY_13494.1"; Scaffold009 rebuild exon 277829 278370 . - . gene_id "RvY_13494"; transcript_id "RvY_13494.1"; Scaffold009 rebuild exon 278464 278731 . - . gene_id "RvY_13494"; transcript_id "RvY_13494.1"; Scaffold009 rebuild transcript 279306 280149 . + . gene_id "RvY_13495"; transcript_id "RvY_13495.1"; annotation "hypothetical protein."; Pfam "[Cadherin]"; Scaffold009 rebuild exon 279306 279854 . + . gene_id "RvY_13495"; transcript_id "RvY_13495.1"; Scaffold009 rebuild exon 279937 280149 . + . gene_id "RvY_13495"; transcript_id "RvY_13495.1"; Scaffold009 rebuild transcript 280542 282859 . - . gene_id "RvY_13496"; transcript_id "RvY_13496.1"; gene_name "SNW1"; annotation "Puff-specific protein Bx42"; Pfam "[SKIP_SNW] SKIP/SNW domain"; KO "K06063"; similar_genes "BX42_DROME(e-value:2.2e-89;bit-score:326.0)"; Scaffold009 rebuild exon 280542 280978 . - . gene_id "RvY_13496"; transcript_id "RvY_13496.1"; Scaffold009 rebuild exon 281162 281708 . - . gene_id "RvY_13496"; transcript_id "RvY_13496.1"; Scaffold009 rebuild exon 281985 282412 . - . gene_id "RvY_13496"; transcript_id "RvY_13496.1"; Scaffold009 rebuild exon 282580 282859 . - . gene_id "RvY_13496"; transcript_id "RvY_13496.1"; Scaffold009 rebuild transcript 283434 284223 . + . gene_id "RvY_13497"; transcript_id "RvY_13497.1"; annotation "putative Transmembrane emp24 domain-containing protein"; Pfam "[EMP24_GP25L] emp24/gp25L/p24 family/GOLD"; similar_genes "TMED_NEMVE(e-value:1.8e-31;bit-score:134.0)"; Scaffold009 rebuild exon 283434 283613 . + . gene_id "RvY_13497"; transcript_id "RvY_13497.1"; Scaffold009 rebuild exon 283783 284223 . + . gene_id "RvY_13497"; transcript_id "RvY_13497.1"; Scaffold009 rebuild transcript 284406 285356 . - . gene_id "RvY_13498"; transcript_id "RvY_13498.1"; gene_name "SAM"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; CDD "Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization."; Scaffold009 rebuild exon 284406 284777 . - . gene_id "RvY_13498"; transcript_id "RvY_13498.1"; Scaffold009 rebuild exon 284862 285356 . - . gene_id "RvY_13498"; transcript_id "RvY_13498.1"; Scaffold009 rebuild transcript 285621 286753 . - . gene_id "RvY_13499"; transcript_id "RvY_13499.1"; gene_name "BET4"; annotation "hypothetical protein."; Pfam "[PPTA] Protein prenyltransferase alpha subunit repeat"; CDD "Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]"; KO "K14050"; Scaffold009 rebuild exon 285621 286335 . - . gene_id "RvY_13499"; transcript_id "RvY_13499.1"; Scaffold009 rebuild exon 286509 286753 . - . gene_id "RvY_13499"; transcript_id "RvY_13499.1"; Scaffold009 rebuild transcript 287139 288469 . + . gene_id "RvY_13500"; transcript_id "RvY_13500.1"; gene_name "RP-L8e"; annotation "60S ribosomal protein L8"; Pfam "[Ribosomal_L2_C] Ribosomal Proteins L2, C-terminal domain|[Ribosomal_L2] Ribosomal Proteins L2, RNA binding domain"; CDD "60S ribosomal protein L2; Provisional"; KO "K02938"; similar_genes "RL8_MAMBR(e-value:1.1e-118;bit-score:423.0)"; Scaffold009 rebuild exon 287139 287276 . + . gene_id "RvY_13500"; transcript_id "RvY_13500.1"; Scaffold009 rebuild exon 287358 287499 . + . gene_id "RvY_13500"; transcript_id "RvY_13500.1"; Scaffold009 rebuild exon 287668 287886 . + . gene_id "RvY_13500"; transcript_id "RvY_13500.1"; Scaffold009 rebuild exon 288112 288227 . + . gene_id "RvY_13500"; transcript_id "RvY_13500.1"; Scaffold009 rebuild exon 288302 288469 . + . gene_id "RvY_13500"; transcript_id "RvY_13500.1"; Scaffold009 rebuild transcript 288687 290102 . - . gene_id "RvY_13501"; transcript_id "RvY_13501.1"; gene_name "PSMB1"; annotation "20S proteasome subunit beta 6 [EC:3.4.25.1]"; Pfam "[Proteasome] Proteasome subunit"; CDD "proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each."; EC "EC3.4.25.1"; KO "K02732"; similar_genes "PSB1_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold009 rebuild exon 288687 288884 . - . gene_id "RvY_13501"; transcript_id "RvY_13501.1"; Scaffold009 rebuild exon 289276 289512 . - . gene_id "RvY_13501"; transcript_id "RvY_13501.1"; Scaffold009 rebuild exon 289587 289668 . - . gene_id "RvY_13501"; transcript_id "RvY_13501.1"; Scaffold009 rebuild exon 289860 289967 . - . gene_id "RvY_13501"; transcript_id "RvY_13501.1"; Scaffold009 rebuild exon 290068 290102 . - . gene_id "RvY_13501"; transcript_id "RvY_13501.1"; Scaffold009 rebuild transcript 291799 292005 . + . gene_id "RvY_13502"; transcript_id "RvY_13502.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 291799 292005 . + . gene_id "RvY_13502"; transcript_id "RvY_13502.1"; Scaffold009 rebuild transcript 295438 296952 . + . gene_id "RvY_13503"; transcript_id "RvY_13503.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 295438 295584 . + . gene_id "RvY_13503"; transcript_id "RvY_13503.1"; Scaffold009 rebuild exon 296686 296952 . + . gene_id "RvY_13503"; transcript_id "RvY_13503.1"; Scaffold009 rebuild transcript 297344 299860 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; annotation "hypothetical protein."; Pfam "[Lipocalin] Lipocalin / cytosolic fatty-acid binding protein family"; Scaffold009 rebuild exon 297344 297484 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; Scaffold009 rebuild exon 298130 298272 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; Scaffold009 rebuild exon 298382 298467 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; Scaffold009 rebuild exon 298577 298635 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; Scaffold009 rebuild exon 298722 298764 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; Scaffold009 rebuild exon 299724 299860 . + . gene_id "RvY_13504"; transcript_id "RvY_13504.1"; Scaffold009 rebuild transcript 301401 303556 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; gene_name "(1)CYCc"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|(1)[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GUC2F_RAT(e-value:9.1e-12;bit-score:68.0)(2)GUC2F_RAT(e-value:5.4e-14;bit-score:76.0)"; Scaffold009 rebuild exon 301401 301523 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 301624 301846 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 301909 302042 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 302117 302283 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 302371 302595 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 302685 302754 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 303028 303083 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild exon 303163 303556 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.1"; Scaffold009 rebuild transcript 302028 303828 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; gene_name "(1)CYCc"; annotation "hypothetical protein."; Pfam "[HNOBA] Heme NO binding associated|(1)[HNOB] Heme NO binding|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "(1)Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "(1)GUC2F_RAT(e-value:9.1e-12;bit-score:68.0)(2)GUC2F_RAT(e-value:5.4e-14;bit-score:76.0)"; Scaffold009 rebuild exon 302028 302042 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 302117 302283 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 302371 302595 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 302685 302754 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 303028 303083 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 303163 303530 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 303605 303696 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild exon 303757 303828 . + . gene_id "RvY_13505"; transcript_id "RvY_13505.2"; Scaffold009 rebuild transcript 303950 305314 . - . gene_id "RvY_13506"; transcript_id "RvY_13506.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 303950 305314 . - . gene_id "RvY_13506"; transcript_id "RvY_13506.1"; Scaffold009 rebuild transcript 306012 306197 . + . gene_id "RvY_13507"; transcript_id "RvY_13507.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 306012 306197 . + . gene_id "RvY_13507"; transcript_id "RvY_13507.1"; Scaffold009 rebuild transcript 307570 310580 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; gene_name "K01672"; annotation "carbonic anhydrase [EC:4.2.1.1]"; Pfam "[Carb_anhydrase] Eukaryotic-type carbonic anhydrase"; CDD "Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the Scaffold009 rebuild exon 307570 307833 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; Scaffold009 rebuild exon 308202 308359 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; Scaffold009 rebuild exon 308555 308714 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; Scaffold009 rebuild exon 309099 309250 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; Scaffold009 rebuild exon 309351 309569 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; Scaffold009 rebuild exon 310532 310580 . - . gene_id "RvY_13508"; transcript_id "RvY_13508.1"; Scaffold009 rebuild transcript 311681 312373 . - . gene_id "RvY_13509"; transcript_id "RvY_13509.1"; gene_name "(1)IPT_PCSR"; annotation "hypothetical protein."; Pfam "[TIG] IPT/TIG domain"; CDD "(1)IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains."; Scaffold009 rebuild exon 311681 311793 . - . gene_id "RvY_13509"; transcript_id "RvY_13509.1"; Scaffold009 rebuild exon 311875 312373 . - . gene_id "RvY_13509"; transcript_id "RvY_13509.1"; Scaffold009 rebuild transcript 312346 312769 . - . gene_id "RvY_13509"; transcript_id "RvY_13509.2"; gene_name "(1)IPT_PCSR"; annotation "hypothetical protein."; Pfam "[TIG] IPT/TIG domain"; CDD "(1)IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains."; Scaffold009 rebuild exon 312346 312409 . - . gene_id "RvY_13509"; transcript_id "RvY_13509.2"; Scaffold009 rebuild exon 312498 312769 . - . gene_id "RvY_13509"; transcript_id "RvY_13509.2"; Scaffold009 rebuild transcript 314007 317095 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; gene_name "ACSL"; annotation "long-chain acyl-CoA synthetase [EC:6.2.1.3]"; Pfam "[AMP-binding] AMP-binding enzyme"; CDD "acyl-CoA synthetase; Validated"; EC "EC6.2.1.-|EC6.2.1.3"; KO "K01897"; similar_genes "ACSF2_BOVIN(e-value:7.3e-18;bit-score:88.0)"; Scaffold009 rebuild exon 314007 314059 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 314119 314387 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 314585 314828 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 314892 315159 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 315553 315870 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 315941 316048 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 316139 316287 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 316579 316864 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild exon 316934 317095 . + . gene_id "RvY_13510"; transcript_id "RvY_13510.1"; Scaffold009 rebuild transcript 317233 318585 . - . gene_id "RvY_13511"; transcript_id "RvY_13511.1"; annotation "hypothetical protein."; similar_genes "K1C0_XENLA(e-value:3.4e-09;bit-score:60.0)"; Scaffold009 rebuild exon 317233 317870 . - . gene_id "RvY_13511"; transcript_id "RvY_13511.1"; Scaffold009 rebuild exon 318135 318177 . - . gene_id "RvY_13511"; transcript_id "RvY_13511.1"; Scaffold009 rebuild exon 318286 318585 . - . gene_id "RvY_13511"; transcript_id "RvY_13511.1"; Scaffold009 rebuild transcript 319480 321793 . - . gene_id "RvY_13512"; transcript_id "RvY_13512.1"; annotation "hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; similar_genes "CP255_MOUSE(e-value:1.4e-12;bit-score:71.0)"; Scaffold009 rebuild exon 319480 319790 . - . gene_id "RvY_13512"; transcript_id "RvY_13512.1"; Scaffold009 rebuild exon 320052 320277 . - . gene_id "RvY_13512"; transcript_id "RvY_13512.1"; Scaffold009 rebuild exon 320339 320412 . - . gene_id "RvY_13512"; transcript_id "RvY_13512.1"; Scaffold009 rebuild exon 320629 321152 . - . gene_id "RvY_13512"; transcript_id "RvY_13512.1"; Scaffold009 rebuild exon 321432 321793 . - . gene_id "RvY_13512"; transcript_id "RvY_13512.1"; Scaffold009 rebuild transcript 322285 323694 . - . gene_id "RvY_13513"; transcript_id "RvY_13513.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 322285 322653 . - . gene_id "RvY_13513"; transcript_id "RvY_13513.1"; Scaffold009 rebuild exon 322984 323694 . - . gene_id "RvY_13513"; transcript_id "RvY_13513.1"; Scaffold009 rebuild transcript 324373 325266 . - . gene_id "RvY_13514"; transcript_id "RvY_13514.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold009 rebuild exon 324373 325266 . - . gene_id "RvY_13514"; transcript_id "RvY_13514.1"; Scaffold009 rebuild transcript 325541 326957 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; gene_name "DHRS4"; annotation "Dehydrogenase/reductase SDR family member 4"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "3-ketoacyl-(acyl-carrier-protein) reductase; Provisional"; EC "EC1.1.-.-|EC1.1.1.184"; KO "K11147"; similar_genes "DHRS4_BOVIN(e-value:6.0e-62;bit-score:235.0)"; Scaffold009 rebuild exon 325541 325655 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild exon 325723 325781 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild exon 325849 325983 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild exon 326066 326188 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild exon 326502 326525 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild exon 326590 326845 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild exon 326902 326957 . - . gene_id "RvY_13515"; transcript_id "RvY_13515.1"; Scaffold009 rebuild transcript 327964 330477 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; gene_name "Tryp_SPc"; annotation "hypothetical protein."; Pfam "[Trypsin]"; CDD "Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their Scaffold009 rebuild exon 327964 328072 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; Scaffold009 rebuild exon 328290 328663 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; Scaffold009 rebuild exon 328728 328819 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; Scaffold009 rebuild exon 328993 329125 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; Scaffold009 rebuild exon 329206 329408 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; Scaffold009 rebuild exon 330012 330477 . + . gene_id "RvY_13516"; transcript_id "RvY_13516.1"; Scaffold009 rebuild transcript 331231 334056 . + . gene_id "RvY_13517"; transcript_id "RvY_13517.1"; annotation "putative Potassium voltage-gated channel subfamily A member 4"; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; similar_genes "KCNA4_HUMAN(e-value:7.7e-26;bit-score:115.0)"; Scaffold009 rebuild exon 331231 332250 . + . gene_id "RvY_13517"; transcript_id "RvY_13517.1"; Scaffold009 rebuild exon 333308 333638 . + . gene_id "RvY_13517"; transcript_id "RvY_13517.1"; Scaffold009 rebuild exon 333827 334056 . + . gene_id "RvY_13517"; transcript_id "RvY_13517.1"; Scaffold009 rebuild transcript 334876 336437 . + . gene_id "RvY_13518"; transcript_id "RvY_13518.1"; annotation "hypothetical protein."; Pfam "(1)[Ion_trans_2] Ion channel|(2)[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; similar_genes "(1)KCNF1_MOUSE(e-value:4.6e-11;bit-score:66.0)(2)KCNAS_DROME(e-value:7.3e-18;bit-score:88.0)"; Scaffold009 rebuild exon 334876 335402 . + . gene_id "RvY_13518"; transcript_id "RvY_13518.1"; Scaffold009 rebuild exon 335762 336186 . + . gene_id "RvY_13518"; transcript_id "RvY_13518.1"; Scaffold009 rebuild exon 336268 336437 . + . gene_id "RvY_13518"; transcript_id "RvY_13518.1"; Scaffold009 rebuild transcript 334528 335406 . + . gene_id "RvY_13518"; transcript_id "RvY_13518.2"; annotation "hypothetical protein."; Pfam "(1)[Ion_trans_2] Ion channel|(2)[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; similar_genes "(1)KCNF1_MOUSE(e-value:4.6e-11;bit-score:66.0)(2)KCNAS_DROME(e-value:7.3e-18;bit-score:88.0)"; Scaffold009 rebuild exon 334528 335406 . + . gene_id "RvY_13518"; transcript_id "RvY_13518.2"; Scaffold009 rebuild transcript 337647 338168 . - . gene_id "RvY_13519"; transcript_id "RvY_13519.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 337647 338168 . - . gene_id "RvY_13519"; transcript_id "RvY_13519.1"; Scaffold009 rebuild transcript 339041 341529 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; gene_name "bkdA1"; annotation "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"; Pfam "[Transketolase_N] Transketolase, thiamine diphosphate binding domain|[E1_dh] Dehydrogenase E1 component"; CDD "Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine)."; EC "EC1.2.4.4"; KO "K00166"; similar_genes "ODBA_HUMAN(e-value:2.7e-117;bit-score:419.0)"; Scaffold009 rebuild exon 339041 339340 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; Scaffold009 rebuild exon 339665 339999 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; Scaffold009 rebuild exon 340301 340539 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; Scaffold009 rebuild exon 340653 341022 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; Scaffold009 rebuild exon 341249 341377 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; Scaffold009 rebuild exon 341466 341529 . - . gene_id "RvY_13520"; transcript_id "RvY_13520.1"; Scaffold009 rebuild transcript 342261 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 342261 342424 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild exon 342489 342569 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild exon 343758 343874 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild exon 346763 346967 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild exon 347917 348076 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild exon 348353 348477 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild exon 348987 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.1"; Scaffold009 rebuild transcript 343723 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 343723 343874 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.2"; Scaffold009 rebuild exon 346763 346967 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.2"; Scaffold009 rebuild exon 347917 348076 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.2"; Scaffold009 rebuild exon 348353 348477 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.2"; Scaffold009 rebuild exon 348987 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.2"; Scaffold009 rebuild transcript 342261 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 342261 342424 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.3"; Scaffold009 rebuild exon 342489 342569 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.3"; Scaffold009 rebuild exon 343758 343874 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.3"; Scaffold009 rebuild exon 346763 346967 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.3"; Scaffold009 rebuild exon 348987 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.3"; Scaffold009 rebuild transcript 343723 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.4"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 343723 343874 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.4"; Scaffold009 rebuild exon 346763 346967 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.4"; Scaffold009 rebuild exon 348987 349265 . - . gene_id "RvY_13521"; transcript_id "RvY_13521.4"; Scaffold009 rebuild transcript 349292 349492 . - . gene_id "RvY_13522"; transcript_id "RvY_13522.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 349292 349492 . - . gene_id "RvY_13522"; transcript_id "RvY_13522.1"; Scaffold009 rebuild transcript 350506 352006 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.1"; annotation "hypothetical protein."; Pfam "[SEA]|(2)[Podoplanin]"; Scaffold009 rebuild exon 350506 350715 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.1"; Scaffold009 rebuild exon 350812 351079 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.1"; Scaffold009 rebuild exon 351163 351866 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.1"; Scaffold009 rebuild exon 351932 352006 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.1"; Scaffold009 rebuild transcript 351159 352006 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.2"; annotation "hypothetical protein."; Pfam "[SEA]|(2)[Podoplanin]"; Scaffold009 rebuild exon 351159 351866 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.2"; Scaffold009 rebuild exon 351932 352006 . - . gene_id "RvY_13523"; transcript_id "RvY_13523.2"; Scaffold009 rebuild transcript 352270 364377 . + . gene_id "RvY_13524"; transcript_id "RvY_13524.1"; annotation "hypothetical protein."; similar_genes "GRP1_ARATH(e-value:2.2e-19;bit-score:93.0)"; Scaffold009 rebuild exon 352270 352357 . + . gene_id "RvY_13524"; transcript_id "RvY_13524.1"; Scaffold009 rebuild exon 352419 353242 . + . gene_id "RvY_13524"; transcript_id "RvY_13524.1"; Scaffold009 rebuild exon 353381 354455 . + . gene_id "RvY_13524"; transcript_id "RvY_13524.1"; Scaffold009 rebuild exon 361638 362881 . + . gene_id "RvY_13524"; transcript_id "RvY_13524.1"; Scaffold009 rebuild exon 363163 364377 . + . gene_id "RvY_13524"; transcript_id "RvY_13524.1"; Scaffold009 rebuild transcript 353315 366261 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; gene_name "Herpes_BLLF1"; annotation "hypothetical protein."; CDD "Herpes virus major outer envelope glycoprotein (BLLF1). This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo."; similar_genes "MUA1_XENLA(e-value:6.0e-11;bit-score:65.0)"; Scaffold009 rebuild exon 353315 353692 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; Scaffold009 rebuild exon 363318 363329 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; Scaffold009 rebuild exon 363654 364594 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; Scaffold009 rebuild exon 364892 365338 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; Scaffold009 rebuild exon 365412 365714 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; Scaffold009 rebuild exon 366174 366261 . - . gene_id "RvY_13525"; transcript_id "RvY_13525.1"; Scaffold009 rebuild transcript 368061 368627 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 368061 368627 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.1"; Scaffold009 rebuild transcript 367436 368406 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 367436 367566 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.2"; Scaffold009 rebuild exon 367701 367862 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.2"; Scaffold009 rebuild exon 367934 367971 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.2"; Scaffold009 rebuild exon 368053 368132 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.2"; Scaffold009 rebuild exon 368269 368406 . + . gene_id "RvY_13526"; transcript_id "RvY_13526.2"; Scaffold009 rebuild transcript 369060 370088 . + . gene_id "RvY_13527"; transcript_id "RvY_13527.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold009 rebuild exon 369060 369230 . + . gene_id "RvY_13527"; transcript_id "RvY_13527.1"; Scaffold009 rebuild exon 369453 370088 . + . gene_id "RvY_13527"; transcript_id "RvY_13527.1"; Scaffold009 rebuild transcript 372107 375273 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; gene_name "CwfJ_C_1"; annotation "hypothetical protein."; Pfam "[CwfJ_C_2] Protein similar to CwfJ C-terminus 2|[CwfJ_C_1] Protein similar to CwfJ C-terminus 1"; CDD "Protein similar to CwfJ C-terminus 1. This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved in mRNA splicing."; similar_genes "C19L1_MOUSE(e-value:3.9e-25;bit-score:113.0)"; Scaffold009 rebuild exon 372107 372217 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 372275 372350 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 372438 372539 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 373274 373494 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 373561 373761 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 373968 374310 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 374563 374864 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 374943 375043 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild exon 375132 375273 . + . gene_id "RvY_13528"; transcript_id "RvY_13528.1"; Scaffold009 rebuild transcript 376094 377020 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 376094 376205 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.1"; Scaffold009 rebuild exon 376315 376424 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.1"; Scaffold009 rebuild exon 376748 377020 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.1"; Scaffold009 rebuild transcript 376094 376892 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 376094 376205 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.2"; Scaffold009 rebuild exon 376315 376423 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.2"; Scaffold009 rebuild exon 376748 376892 . + . gene_id "RvY_13529"; transcript_id "RvY_13529.2"; Scaffold009 rebuild transcript 376766 376951 . - . gene_id "RvY_13530"; transcript_id "RvY_13530.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 376766 376951 . - . gene_id "RvY_13530"; transcript_id "RvY_13530.1"; Scaffold009 rebuild transcript 377737 378501 . + . gene_id "RvY_13531"; transcript_id "RvY_13531.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 377737 377824 . + . gene_id "RvY_13531"; transcript_id "RvY_13531.1"; Scaffold009 rebuild exon 377904 378060 . + . gene_id "RvY_13531"; transcript_id "RvY_13531.1"; Scaffold009 rebuild exon 378282 378501 . + . gene_id "RvY_13531"; transcript_id "RvY_13531.1"; Scaffold009 rebuild transcript 378959 381400 . + . gene_id "RvY_13532"; transcript_id "RvY_13532.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; Scaffold009 rebuild exon 378959 379311 . + . gene_id "RvY_13532"; transcript_id "RvY_13532.1"; Scaffold009 rebuild exon 379388 380253 . + . gene_id "RvY_13532"; transcript_id "RvY_13532.1"; Scaffold009 rebuild exon 380351 380686 . + . gene_id "RvY_13532"; transcript_id "RvY_13532.1"; Scaffold009 rebuild exon 380994 381079 . + . gene_id "RvY_13532"; transcript_id "RvY_13532.1"; Scaffold009 rebuild exon 381158 381400 . + . gene_id "RvY_13532"; transcript_id "RvY_13532.1"; Scaffold009 rebuild transcript 382001 382927 . + . gene_id "RvY_13533"; transcript_id "RvY_13533.1"; annotation "hypothetical protein."; Pfam "[L_HGMIC_fpl] Lipoma HMGIC fusion partner-like protein"; similar_genes "CP52A_XENLA(e-value:7.3e-18;bit-score:88.0)"; Scaffold009 rebuild exon 382001 382112 . + . gene_id "RvY_13533"; transcript_id "RvY_13533.1"; Scaffold009 rebuild exon 382170 382382 . + . gene_id "RvY_13533"; transcript_id "RvY_13533.1"; Scaffold009 rebuild exon 382737 382927 . + . gene_id "RvY_13533"; transcript_id "RvY_13533.1"; Scaffold009 rebuild transcript 383278 387959 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; gene_name "ACO"; annotation "Aconitate hydratase, mitochondrial"; Pfam "[Aconitase_C] Aconitase C-terminal domain|[Aconitase] Aconitase family (aconitate hydratase)"; CDD "aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase."; EC "EC4.2.1.3"; KO "K01681"; similar_genes "ACON_MOUSE(e-value:3.9e-131;bit-score:465.0)"; Scaffold009 rebuild exon 383278 383439 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 383994 384115 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 384189 384415 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 384496 384593 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 384827 385145 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 385375 385688 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 385825 386277 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 386626 386877 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 386944 387024 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 387137 387175 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 387447 387585 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 387664 387743 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 387797 387886 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild exon 387957 387959 . - . gene_id "RvY_13534"; transcript_id "RvY_13534.1"; Scaffold009 rebuild transcript 389028 389969 . - . gene_id "RvY_13535"; transcript_id "RvY_13535.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 389028 389548 . - . gene_id "RvY_13535"; transcript_id "RvY_13535.1"; Scaffold009 rebuild exon 389625 389711 . - . gene_id "RvY_13535"; transcript_id "RvY_13535.1"; Scaffold009 rebuild exon 389852 389969 . - . gene_id "RvY_13535"; transcript_id "RvY_13535.1"; Scaffold009 rebuild transcript 390026 390235 . + . gene_id "RvY_13536"; transcript_id "RvY_13536.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 390026 390235 . + . gene_id "RvY_13536"; transcript_id "RvY_13536.1"; Scaffold009 rebuild transcript 390287 390538 . - . gene_id "RvY_13537"; transcript_id "RvY_13537.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 390287 390538 . - . gene_id "RvY_13537"; transcript_id "RvY_13537.1"; Scaffold009 rebuild transcript 391338 391619 . - . gene_id "RvY_13538"; transcript_id "RvY_13538.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 391338 391619 . - . gene_id "RvY_13538"; transcript_id "RvY_13538.1"; Scaffold009 rebuild transcript 395412 396812 . + . gene_id "RvY_13539"; transcript_id "RvY_13539.1"; gene_name "COG3889"; annotation "hypothetical protein."; CDD "Predicted solute binding protein [General function prediction only]"; similar_genes "MUC1_XENLA(e-value:9.2e-14;bit-score:75.0)"; Scaffold009 rebuild exon 395412 396812 . + . gene_id "RvY_13539"; transcript_id "RvY_13539.1"; Scaffold009 rebuild transcript 398179 401550 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; gene_name "CCT1"; annotation "T-complex protein 1 subunit alpha"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes."; KO "K09493"; similar_genes "TCPA_MONDO(e-value:4.9e-229;bit-score:790.0)"; Scaffold009 rebuild exon 398179 398371 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 398800 398963 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 399265 399581 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 399852 400027 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 400082 400390 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 400728 400838 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 400929 401026 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 401097 401225 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 401309 401394 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild exon 401481 401550 . - . gene_id "RvY_13540"; transcript_id "RvY_13540.1"; Scaffold009 rebuild transcript 402052 403052 . + . gene_id "RvY_13541"; transcript_id "RvY_13541.1"; gene_name "MOB1"; annotation "Mps one binder kinase activator-like 1"; Pfam "[Mob1_phocein] Mob1/phocein family"; KO "K06685"; similar_genes "MOB1_DROME(e-value:2.4e-82;bit-score:303.0)"; Scaffold009 rebuild exon 402052 402096 . + . gene_id "RvY_13541"; transcript_id "RvY_13541.1"; Scaffold009 rebuild exon 402161 402460 . + . gene_id "RvY_13541"; transcript_id "RvY_13541.1"; Scaffold009 rebuild exon 402726 403052 . + . gene_id "RvY_13541"; transcript_id "RvY_13541.1"; Scaffold009 rebuild transcript 403581 404588 . - . gene_id "RvY_13542"; transcript_id "RvY_13542.1"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold009 rebuild exon 403581 404101 . - . gene_id "RvY_13542"; transcript_id "RvY_13542.1"; Scaffold009 rebuild exon 404414 404588 . - . gene_id "RvY_13542"; transcript_id "RvY_13542.1"; Scaffold009 rebuild transcript 405068 410905 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; gene_name "POL5"; annotation "DNA polymerase phi subunit [EC:2.7.7.7]"; Pfam "[DNA_pol_phi] DNA polymerase phi"; CDD "DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units."; EC "EC2.7.7.7"; KO "K02331"; Scaffold009 rebuild exon 405068 405450 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 405816 406126 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 406205 406473 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 406530 406808 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 407137 407403 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 407665 407973 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 408272 408543 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 408784 409039 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 409105 409298 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 409368 409638 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 409879 410001 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 410069 410332 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 410392 410499 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild exon 410675 410905 . - . gene_id "RvY_13543"; transcript_id "RvY_13543.1"; Scaffold009 rebuild transcript 411702 415239 . - . gene_id "RvY_13544"; transcript_id "RvY_13544.1"; gene_name "K01021"; annotation "Protein-tyrosine sulfotransferase"; Pfam "[Sulfotransfer_1] Sulfotransferase domain|[Sulfotransfer_3] Sulfotransferase family"; EC "EC2.8.2.20"; KO "K01021"; similar_genes "TPST_DROME(e-value:1.0e-116;bit-score:417.0)"; Scaffold009 rebuild exon 411702 412047 . - . gene_id "RvY_13544"; transcript_id "RvY_13544.1"; Scaffold009 rebuild exon 412430 412648 . - . gene_id "RvY_13544"; transcript_id "RvY_13544.1"; Scaffold009 rebuild exon 412723 412916 . - . gene_id "RvY_13544"; transcript_id "RvY_13544.1"; Scaffold009 rebuild exon 414291 414481 . - . gene_id "RvY_13544"; transcript_id "RvY_13544.1"; Scaffold009 rebuild exon 415023 415239 . - . gene_id "RvY_13544"; transcript_id "RvY_13544.1"; Scaffold009 rebuild transcript 416194 416373 . - . gene_id "RvY_13545"; transcript_id "RvY_13545.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 416194 416373 . - . gene_id "RvY_13545"; transcript_id "RvY_13545.1"; Scaffold009 rebuild transcript 416345 417511 . + . gene_id "RvY_13546"; transcript_id "RvY_13546.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 416345 416474 . + . gene_id "RvY_13546"; transcript_id "RvY_13546.1"; Scaffold009 rebuild exon 416604 416947 . + . gene_id "RvY_13546"; transcript_id "RvY_13546.1"; Scaffold009 rebuild exon 417272 417511 . + . gene_id "RvY_13546"; transcript_id "RvY_13546.1"; Scaffold009 rebuild transcript 418316 420200 . + . gene_id "RvY_13547"; transcript_id "RvY_13547.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold009 rebuild exon 418316 418596 . + . gene_id "RvY_13547"; transcript_id "RvY_13547.1"; Scaffold009 rebuild exon 418803 419209 . + . gene_id "RvY_13547"; transcript_id "RvY_13547.1"; Scaffold009 rebuild exon 419554 420200 . + . gene_id "RvY_13547"; transcript_id "RvY_13547.1"; Scaffold009 rebuild transcript 420720 421887 . + . gene_id "RvY_13548"; transcript_id "RvY_13548.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 420720 420965 . + . gene_id "RvY_13548"; transcript_id "RvY_13548.1"; Scaffold009 rebuild exon 420981 421380 . + . gene_id "RvY_13548"; transcript_id "RvY_13548.1"; Scaffold009 rebuild exon 421637 421887 . + . gene_id "RvY_13548"; transcript_id "RvY_13548.1"; Scaffold009 rebuild transcript 422145 425041 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; gene_name "NGP_1"; annotation "Nucleolar GTP-binding protein 2"; Pfam "[NGP1NT] NGP1NT (NUC091) domain|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus."; KO "K14537"; similar_genes "NOG2_MOUSE(e-value:4.2e-122;bit-score:435.0)"; Scaffold009 rebuild exon 422145 422662 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; Scaffold009 rebuild exon 422926 423304 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; Scaffold009 rebuild exon 423666 424067 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; Scaffold009 rebuild exon 424132 424284 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; Scaffold009 rebuild exon 424440 424618 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; Scaffold009 rebuild exon 424732 425041 . - . gene_id "RvY_13549"; transcript_id "RvY_13549.1"; Scaffold009 rebuild transcript 427820 439942 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; gene_name "MYH"; annotation "Myosin heavy chain, non-muscle"; Pfam "[Myosin_head] Myosin head (motor domain)|[Myosin_N] Myosin N-terminal SH3-like domain|[Myosin_tail_1] Myosin tail"; CDD "Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle."; KO "K10352"; similar_genes "MYSN_DROME(e-value:9.6e-141;bit-score:497.0)"; Scaffold009 rebuild exon 427820 428164 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 428670 428826 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 429888 429915 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 430191 430311 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 430461 430493 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 430591 430683 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 430770 430932 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 431402 431641 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 431709 431980 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 432185 432526 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 432586 432766 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 433017 433500 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 433795 434010 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 434089 434326 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 434565 434987 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 435211 435405 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 435484 435870 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 436152 436313 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 436547 436842 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 437131 437578 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 437899 438278 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 438549 438948 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 439256 439470 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild exon 439777 439942 . + . gene_id "RvY_13550"; transcript_id "RvY_13550.1"; Scaffold009 rebuild transcript 441226 442481 . + . gene_id "RvY_13551"; transcript_id "RvY_13551.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 441226 441237 . + . gene_id "RvY_13551"; transcript_id "RvY_13551.1"; Scaffold009 rebuild exon 441330 441382 . + . gene_id "RvY_13551"; transcript_id "RvY_13551.1"; Scaffold009 rebuild exon 441454 441531 . + . gene_id "RvY_13551"; transcript_id "RvY_13551.1"; Scaffold009 rebuild exon 441595 441679 . + . gene_id "RvY_13551"; transcript_id "RvY_13551.1"; Scaffold009 rebuild exon 441888 442481 . + . gene_id "RvY_13551"; transcript_id "RvY_13551.1"; Scaffold009 rebuild transcript 443585 445296 . + . gene_id "RvY_13552"; transcript_id "RvY_13552.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 443585 443724 . + . gene_id "RvY_13552"; transcript_id "RvY_13552.1"; Scaffold009 rebuild exon 443809 443937 . + . gene_id "RvY_13552"; transcript_id "RvY_13552.1"; Scaffold009 rebuild exon 444082 444250 . + . gene_id "RvY_13552"; transcript_id "RvY_13552.1"; Scaffold009 rebuild exon 444308 444582 . + . gene_id "RvY_13552"; transcript_id "RvY_13552.1"; Scaffold009 rebuild exon 444861 445296 . + . gene_id "RvY_13552"; transcript_id "RvY_13552.1"; Scaffold009 rebuild transcript 445747 447281 . - . gene_id "RvY_13553"; transcript_id "RvY_13553.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 445747 445864 . - . gene_id "RvY_13553"; transcript_id "RvY_13553.1"; Scaffold009 rebuild exon 446020 446787 . - . gene_id "RvY_13553"; transcript_id "RvY_13553.1"; Scaffold009 rebuild exon 447127 447281 . - . gene_id "RvY_13553"; transcript_id "RvY_13553.1"; Scaffold009 rebuild transcript 447967 450263 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 447967 448269 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; Scaffold009 rebuild exon 448621 448703 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; Scaffold009 rebuild exon 448769 449204 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; Scaffold009 rebuild exon 449557 449687 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; Scaffold009 rebuild exon 449858 449962 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; Scaffold009 rebuild exon 450083 450263 . - . gene_id "RvY_13554"; transcript_id "RvY_13554.1"; Scaffold009 rebuild transcript 451155 451433 . + . gene_id "RvY_13555"; transcript_id "RvY_13555.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 451155 451433 . + . gene_id "RvY_13555"; transcript_id "RvY_13555.1"; Scaffold009 rebuild transcript 452203 453485 . - . gene_id "RvY_13556"; transcript_id "RvY_13556.1"; annotation "hypothetical protein."; Pfam "[Translin] Translin family"; Scaffold009 rebuild exon 452203 452576 . - . gene_id "RvY_13556"; transcript_id "RvY_13556.1"; Scaffold009 rebuild exon 452850 453168 . - . gene_id "RvY_13556"; transcript_id "RvY_13556.1"; Scaffold009 rebuild exon 453237 453485 . - . gene_id "RvY_13556"; transcript_id "RvY_13556.1"; Scaffold009 rebuild transcript 454049 456222 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 454049 454212 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; Scaffold009 rebuild exon 454295 454376 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; Scaffold009 rebuild exon 454440 454500 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; Scaffold009 rebuild exon 454627 454787 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; Scaffold009 rebuild exon 455118 455496 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; Scaffold009 rebuild exon 455825 456222 . + . gene_id "RvY_13557"; transcript_id "RvY_13557.1"; Scaffold009 rebuild transcript 456352 456549 . - . gene_id "RvY_13558"; transcript_id "RvY_13558.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 456352 456549 . - . gene_id "RvY_13558"; transcript_id "RvY_13558.1"; Scaffold009 rebuild transcript 456780 458686 . - . gene_id "RvY_13559"; transcript_id "RvY_13559.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 456780 457469 . - . gene_id "RvY_13559"; transcript_id "RvY_13559.1"; Scaffold009 rebuild exon 458189 458328 . - . gene_id "RvY_13559"; transcript_id "RvY_13559.1"; Scaffold009 rebuild exon 458397 458529 . - . gene_id "RvY_13559"; transcript_id "RvY_13559.1"; Scaffold009 rebuild exon 458606 458686 . - . gene_id "RvY_13559"; transcript_id "RvY_13559.1"; Scaffold009 rebuild transcript 459516 460211 . - . gene_id "RvY_13560"; transcript_id "RvY_13560.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 459516 460211 . - . gene_id "RvY_13560"; transcript_id "RvY_13560.1"; Scaffold009 rebuild transcript 460658 461073 . - . gene_id "RvY_13561"; transcript_id "RvY_13561.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 460658 460735 . - . gene_id "RvY_13561"; transcript_id "RvY_13561.1"; Scaffold009 rebuild exon 460852 461073 . - . gene_id "RvY_13561"; transcript_id "RvY_13561.1"; Scaffold009 rebuild transcript 461831 462350 . + . gene_id "RvY_13562"; transcript_id "RvY_13562.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 461831 461948 . + . gene_id "RvY_13562"; transcript_id "RvY_13562.1"; Scaffold009 rebuild exon 462013 462350 . + . gene_id "RvY_13562"; transcript_id "RvY_13562.1"; Scaffold009 rebuild transcript 462510 463006 . + . gene_id "RvY_13563"; transcript_id "RvY_13563.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold009 rebuild exon 462510 462843 . + . gene_id "RvY_13563"; transcript_id "RvY_13563.1"; Scaffold009 rebuild exon 462993 463006 . + . gene_id "RvY_13563"; transcript_id "RvY_13563.1"; Scaffold009 rebuild transcript 463725 464491 . + . gene_id "RvY_13564"; transcript_id "RvY_13564.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 463725 464159 . + . gene_id "RvY_13564"; transcript_id "RvY_13564.1"; Scaffold009 rebuild exon 464336 464491 . + . gene_id "RvY_13564"; transcript_id "RvY_13564.1"; Scaffold009 rebuild transcript 463725 464192 . + . gene_id "RvY_13564"; transcript_id "RvY_13564.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 463725 464192 . + . gene_id "RvY_13564"; transcript_id "RvY_13564.2"; Scaffold009 rebuild transcript 464589 464987 . + . gene_id "RvY_13565"; transcript_id "RvY_13565.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 464589 464987 . + . gene_id "RvY_13565"; transcript_id "RvY_13565.1"; Scaffold009 rebuild transcript 465767 470073 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; gene_name "SpoVK"; annotation "hypothetical protein."; Pfam "[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]"; similar_genes "Y1297_ARCFU(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 465767 465814 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 466048 466221 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 466312 466431 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 466737 466934 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 467019 467181 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 467239 467459 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 467541 467641 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 467895 468175 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 468237 468298 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 468398 468549 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 468766 468934 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 469006 469231 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 469327 469608 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 469715 469801 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild exon 469871 470073 . - . gene_id "RvY_13566"; transcript_id "RvY_13566.1"; Scaffold009 rebuild transcript 474678 475228 . + . gene_id "RvY_13567"; transcript_id "RvY_13567.1"; annotation "hypothetical protein."; Pfam "[CBM_5_12] Carbohydrate binding domain"; Scaffold009 rebuild exon 474678 474690 . + . gene_id "RvY_13567"; transcript_id "RvY_13567.1"; Scaffold009 rebuild exon 474762 475228 . + . gene_id "RvY_13567"; transcript_id "RvY_13567.1"; Scaffold009 rebuild transcript 474972 475337 . + . gene_id "RvY_13567"; transcript_id "RvY_13567.2"; annotation "hypothetical protein."; Pfam "[CBM_5_12] Carbohydrate binding domain"; Scaffold009 rebuild exon 474972 475337 . + . gene_id "RvY_13567"; transcript_id "RvY_13567.2"; Scaffold009 rebuild transcript 475355 475645 . - . gene_id "RvY_13568"; transcript_id "RvY_13568.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 475355 475401 . - . gene_id "RvY_13568"; transcript_id "RvY_13568.1"; Scaffold009 rebuild exon 475465 475645 . - . gene_id "RvY_13568"; transcript_id "RvY_13568.1"; Scaffold009 rebuild transcript 477512 479655 . + . gene_id "RvY_13569"; transcript_id "RvY_13569.1"; gene_name "Qor"; annotation "hypothetical protein."; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N_2] Zinc-binding dehydrogenase|[ADH_zinc_N] Zinc-binding dehydrogenase"; CDD "NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]"; similar_genes "RT4I1_MOUSE(e-value:2.0e-11;bit-score:67.0)"; Scaffold009 rebuild exon 477512 478136 . + . gene_id "RvY_13569"; transcript_id "RvY_13569.1"; Scaffold009 rebuild exon 478389 478879 . + . gene_id "RvY_13569"; transcript_id "RvY_13569.1"; Scaffold009 rebuild exon 479131 479655 . + . gene_id "RvY_13569"; transcript_id "RvY_13569.1"; Scaffold009 rebuild transcript 481795 482264 . + . gene_id "RvY_13570"; transcript_id "RvY_13570.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 481795 481859 . + . gene_id "RvY_13570"; transcript_id "RvY_13570.1"; Scaffold009 rebuild exon 482090 482264 . + . gene_id "RvY_13570"; transcript_id "RvY_13570.1"; Scaffold009 rebuild transcript 483025 484700 . - . gene_id "RvY_13571"; transcript_id "RvY_13571.1"; gene_name "fabF"; annotation "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial"; Pfam "[Ketoacyl-synt_C] Beta-ketoacyl synthase, C-terminal domain|[ketoacyl-synt] Beta-ketoacyl synthase, N-terminal domain"; CDD "3-oxoacyl-(acyl carrier protein) synthase II; Reviewed"; EC "EC2.3.1.179|EC2.3.1.41"; KO "K09458"; similar_genes "KASM_ARATH(e-value:5.0e-74;bit-score:275.0)"; Scaffold009 rebuild exon 483025 483371 . - . gene_id "RvY_13571"; transcript_id "RvY_13571.1"; Scaffold009 rebuild exon 483593 484026 . - . gene_id "RvY_13571"; transcript_id "RvY_13571.1"; Scaffold009 rebuild exon 484204 484700 . - . gene_id "RvY_13571"; transcript_id "RvY_13571.1"; Scaffold009 rebuild transcript 485614 485931 . + . gene_id "RvY_13572"; transcript_id "RvY_13572.1"; annotation "hypothetical protein."; Pfam "[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; Scaffold009 rebuild exon 485614 485931 . + . gene_id "RvY_13572"; transcript_id "RvY_13572.1"; Scaffold009 rebuild transcript 486998 487462 . + . gene_id "RvY_13573"; transcript_id "RvY_13573.1"; annotation "hypothetical protein."; Pfam "[Cyt-b5] Cytochrome b5-like Heme/Steroid binding domain"; similar_genes "CYB5_ALOSE(e-value:3.3e-22;bit-score:103.0)"; Scaffold009 rebuild exon 486998 487462 . + . gene_id "RvY_13573"; transcript_id "RvY_13573.1"; Scaffold009 rebuild transcript 488403 489356 . + . gene_id "RvY_13574"; transcript_id "RvY_13574.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 488403 488573 . + . gene_id "RvY_13574"; transcript_id "RvY_13574.1"; Scaffold009 rebuild exon 489126 489356 . + . gene_id "RvY_13574"; transcript_id "RvY_13574.1"; Scaffold009 rebuild transcript 489729 495007 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 489729 489944 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 490208 490290 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 490356 490791 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 491146 491342 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 491468 491677 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 491916 492332 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 492649 492809 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 492889 493106 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 493194 493473 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 493811 493944 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 494022 494191 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 494326 494491 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 494581 494748 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild exon 494813 495007 . - . gene_id "RvY_13575"; transcript_id "RvY_13575.1"; Scaffold009 rebuild transcript 496152 498551 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; gene_name "manA"; annotation "putative Mannose-6-phosphate isomerase"; Pfam "[PMI_typeI] Phosphomannose isomerase type I"; CDD "Phosphomannose isomerase type I. This is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8)."; EC "EC5.3.1.8"; KO "K01809"; similar_genes "MPI_CANGA(e-value:2.6e-26;bit-score:116.0)"; Scaffold009 rebuild exon 496152 496355 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 496615 496823 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 496896 497069 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 497140 497325 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 497399 497459 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 497547 497627 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 497732 497935 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 498077 498204 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild exon 498353 498551 . - . gene_id "RvY_13576"; transcript_id "RvY_13576.1"; Scaffold009 rebuild transcript 499939 500937 . + . gene_id "RvY_13577"; transcript_id "RvY_13577.1"; gene_name "Keratin_assoc"; annotation "hypothetical protein."; Pfam "[Keratin_assoc] Keratinocyte-associated protein 2"; CDD "Keratinocyte-associated protein 2. Members of this family comprise various keratinocyte-associated proteins. Their exact function has not, as yet, been determined."; similar_genes "KTAP2_AEDAE(e-value:5.4e-14;bit-score:76.0)"; Scaffold009 rebuild exon 499939 499942 . + . gene_id "RvY_13577"; transcript_id "RvY_13577.1"; Scaffold009 rebuild exon 500020 500174 . + . gene_id "RvY_13577"; transcript_id "RvY_13577.1"; Scaffold009 rebuild exon 500299 500362 . + . gene_id "RvY_13577"; transcript_id "RvY_13577.1"; Scaffold009 rebuild exon 500427 500493 . + . gene_id "RvY_13577"; transcript_id "RvY_13577.1"; Scaffold009 rebuild exon 500835 500937 . + . gene_id "RvY_13577"; transcript_id "RvY_13577.1"; Scaffold009 rebuild transcript 504316 510825 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold009 rebuild exon 504316 504621 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; Scaffold009 rebuild exon 504947 505174 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; Scaffold009 rebuild exon 507909 507984 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; Scaffold009 rebuild exon 508126 508290 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; Scaffold009 rebuild exon 509473 510065 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; Scaffold009 rebuild exon 510427 510825 . + . gene_id "RvY_13578"; transcript_id "RvY_13578.1"; Scaffold009 rebuild transcript 511104 511295 . + . gene_id "RvY_13579"; transcript_id "RvY_13579.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 511104 511295 . + . gene_id "RvY_13579"; transcript_id "RvY_13579.1"; Scaffold009 rebuild transcript 511845 514968 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; gene_name "FKBP8"; annotation "FK506-binding protein 8 [EC:5.2.1.8]"; Pfam "[TPR_11] TPR repeat|[FKBP_C] FKBP-type peptidyl-prolyl cis-trans isomerase"; EC "EC5.2.1.8"; KO "K09574"; Scaffold009 rebuild exon 511845 512141 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild exon 512206 512388 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild exon 512639 512828 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild exon 512904 513017 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild exon 513111 513370 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild exon 513635 513942 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild exon 514374 514968 . - . gene_id "RvY_13580"; transcript_id "RvY_13580.1"; Scaffold009 rebuild transcript 515126 516383 . - . gene_id "RvY_13581"; transcript_id "RvY_13581.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 515126 515241 . - . gene_id "RvY_13581"; transcript_id "RvY_13581.1"; Scaffold009 rebuild exon 516239 516383 . - . gene_id "RvY_13581"; transcript_id "RvY_13581.1"; Scaffold009 rebuild transcript 516286 517712 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; gene_name "CSNK2B"; annotation "Casein kinase II subunit beta"; Pfam "[CK_II_beta] Casein kinase II regulatory subunit"; KO "K03115"; similar_genes "CSK2B_XENLA(e-value:3.0e-114;bit-score:409.0)"; Scaffold009 rebuild exon 516286 516357 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild exon 516434 516536 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild exon 516599 516657 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild exon 516778 516834 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild exon 516913 517006 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild exon 517108 517279 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild exon 517493 517712 . + . gene_id "RvY_13582"; transcript_id "RvY_13582.1"; Scaffold009 rebuild transcript 518439 519373 . + . gene_id "RvY_13583"; transcript_id "RvY_13583.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 518439 518964 . + . gene_id "RvY_13583"; transcript_id "RvY_13583.1"; Scaffold009 rebuild exon 519069 519373 . + . gene_id "RvY_13583"; transcript_id "RvY_13583.1"; Scaffold009 rebuild transcript 519461 519934 . - . gene_id "RvY_13584"; transcript_id "RvY_13584.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold009 rebuild exon 519461 519934 . - . gene_id "RvY_13584"; transcript_id "RvY_13584.1"; Scaffold009 rebuild transcript 521084 523741 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; gene_name "K00486"; annotation "putative Kynurenine 3-monooxygenase"; Pfam "[FAD_binding_3] FAD binding domain"; CDD "2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]"; EC "EC1.14.13.9"; KO "K00486"; similar_genes "KMO_MOUSE(e-value:4.0e-27;bit-score:119.0)"; Scaffold009 rebuild exon 521084 521209 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 521306 521375 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 521441 521631 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 521829 522137 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 522209 522402 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 522484 522541 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 522818 522904 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 522988 523045 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 523136 523218 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 523301 523462 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild exon 523541 523741 . + . gene_id "RvY_13585"; transcript_id "RvY_13585.1"; Scaffold009 rebuild transcript 523829 524275 . - . gene_id "RvY_13586"; transcript_id "RvY_13586.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 523829 524275 . - . gene_id "RvY_13586"; transcript_id "RvY_13586.1"; Scaffold009 rebuild transcript 524451 525897 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 524451 524480 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; Scaffold009 rebuild exon 524556 524674 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; Scaffold009 rebuild exon 524756 524953 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; Scaffold009 rebuild exon 525074 525208 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; Scaffold009 rebuild exon 525303 525504 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; Scaffold009 rebuild exon 525862 525897 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.1"; Scaffold009 rebuild transcript 525306 526436 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 525306 525504 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.2"; Scaffold009 rebuild exon 525862 526011 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.2"; Scaffold009 rebuild exon 526174 526436 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.2"; Scaffold009 rebuild transcript 525810 526436 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 525810 526011 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.3"; Scaffold009 rebuild exon 526174 526436 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.3"; Scaffold009 rebuild transcript 526252 526617 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.4"; annotation "hypothetical protein."; Scaffold009 rebuild exon 526252 526617 . - . gene_id "RvY_13587"; transcript_id "RvY_13587.4"; Scaffold009 rebuild transcript 526925 528772 . + . gene_id "RvY_13588"; transcript_id "RvY_13588.1"; gene_name "RT_nLTR_like"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; CDD "RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities."; Scaffold009 rebuild exon 526925 528772 . + . gene_id "RvY_13588"; transcript_id "RvY_13588.1"; Scaffold009 rebuild transcript 528808 529539 . + . gene_id "RvY_13589"; transcript_id "RvY_13589.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 528808 528892 . + . gene_id "RvY_13589"; transcript_id "RvY_13589.1"; Scaffold009 rebuild exon 529199 529539 . + . gene_id "RvY_13589"; transcript_id "RvY_13589.1"; Scaffold009 rebuild transcript 529666 530442 . + . gene_id "RvY_13590"; transcript_id "RvY_13590.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 529666 530442 . + . gene_id "RvY_13590"; transcript_id "RvY_13590.1"; Scaffold009 rebuild transcript 530850 533746 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 530850 530895 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 530985 531140 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 531209 531313 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 531396 531641 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 531697 531839 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 531922 532102 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 532188 532318 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 532548 532667 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 532731 532830 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 533301 533494 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild exon 533564 533746 . + . gene_id "RvY_13591"; transcript_id "RvY_13591.1"; Scaffold009 rebuild transcript 533917 534780 . - . gene_id "RvY_13592"; transcript_id "RvY_13592.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold009 rebuild exon 533917 534780 . - . gene_id "RvY_13592"; transcript_id "RvY_13592.1"; Scaffold009 rebuild transcript 535782 536570 . + . gene_id "RvY_13593"; transcript_id "RvY_13593.1"; gene_name "MBF1"; annotation "putative transcription factor"; Pfam "[HTH_31] Helix-turn-helix domain|[HTH_3] Helix-turn-helix|[MBF1] Multiprotein bridging factor 1|[HTH_19] Helix-turn-helix domain"; CDD "Multiprotein bridging factor 1. This domain is found in the multiprotein bridging factor 1 (MBF1) which forms a heterodimer with MBF2. It has been shown to make direct contact with the TATA-box binding protein (TBP) and interacts with Ftz-F1, stabilising the Ftz-F1-DNA complex. It is also found in the endothelial differentiation-related factor (EDF-1). Human EDF-1 is involved in the repression of endothelial differentiation, interacts with CaM and is phosphorylated by PKC. The domain is found in a wide range of eukaryotic proteins including metazoans, fungi and plants. A helix-turn-helix motif (pfam01381) is found to its C-terminus."; KO "K03627"; similar_genes "EDF1_CHICK(e-value:7.3e-18;bit-score:88.0)"; Scaffold009 rebuild exon 535782 535859 . + . gene_id "RvY_13593"; transcript_id "RvY_13593.1"; Scaffold009 rebuild exon 535919 535970 . + . gene_id "RvY_13593"; transcript_id "RvY_13593.1"; Scaffold009 rebuild exon 536042 536139 . + . gene_id "RvY_13593"; transcript_id "RvY_13593.1"; Scaffold009 rebuild exon 536234 536410 . + . gene_id "RvY_13593"; transcript_id "RvY_13593.1"; Scaffold009 rebuild exon 536511 536570 . + . gene_id "RvY_13593"; transcript_id "RvY_13593.1"; Scaffold009 rebuild transcript 537305 540651 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; gene_name "(1)PRK02224"; annotation "hypothetical protein."; CDD "(1)chromosome segregation protein; Provisional"; Scaffold009 rebuild exon 537305 537448 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 537533 537636 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 537715 537895 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 538295 538658 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 538920 539077 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 539140 539508 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 539706 539954 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 540018 540145 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 540344 540446 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild exon 540526 540651 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.1"; Scaffold009 rebuild transcript 538493 540651 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; gene_name "(1)PRK02224"; annotation "hypothetical protein."; CDD "(1)chromosome segregation protein; Provisional"; Scaffold009 rebuild exon 538493 538658 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild exon 538920 539077 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild exon 539140 539508 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild exon 539706 539954 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild exon 540018 540145 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild exon 540344 540446 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild exon 540526 540651 . + . gene_id "RvY_13594"; transcript_id "RvY_13594.2"; Scaffold009 rebuild transcript 541453 543610 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; gene_name "MAP3K7IP1"; annotation "TAK1-binding protein 1"; Pfam "[PP2C] Protein phosphatase 2C"; CDD "Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity."; KO "K04403"; Scaffold009 rebuild exon 541453 541464 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild exon 541537 541673 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild exon 541902 542011 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild exon 542108 542377 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild exon 542465 542684 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild exon 542754 542861 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild exon 543106 543610 . + . gene_id "RvY_13595"; transcript_id "RvY_13595.1"; Scaffold009 rebuild transcript 544020 545749 . - . gene_id "RvY_13596"; transcript_id "RvY_13596.1"; gene_name "G-alpha"; annotation "hypothetical protein."; Pfam "[G-alpha] G-protein alpha subunit|[Arf] ADP-ribosylation factor family"; CDD "G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute."; similar_genes "GNAQ_MOUSE(e-value:5.3e-12;bit-score:69.0)"; Scaffold009 rebuild exon 544020 544592 . - . gene_id "RvY_13596"; transcript_id "RvY_13596.1"; Scaffold009 rebuild exon 544661 544718 . - . gene_id "RvY_13596"; transcript_id "RvY_13596.1"; Scaffold009 rebuild exon 544918 545002 . - . gene_id "RvY_13596"; transcript_id "RvY_13596.1"; Scaffold009 rebuild exon 545058 545324 . - . gene_id "RvY_13596"; transcript_id "RvY_13596.1"; Scaffold009 rebuild exon 545599 545749 . - . gene_id "RvY_13596"; transcript_id "RvY_13596.1"; Scaffold009 rebuild transcript 547188 548013 . + . gene_id "RvY_13597"; transcript_id "RvY_13597.1"; gene_name "ATG12"; annotation "autophagy-related protein 12"; Pfam "[APG12] Ubiquitin-like autophagy protein Apg12|[Atg8] Autophagy protein Atg8 ubiquitin like"; KO "K08336"; similar_genes "ATG12_HUMAN(e-value:5.5e-16;bit-score:82.0)"; Scaffold009 rebuild exon 547188 547544 . + . gene_id "RvY_13597"; transcript_id "RvY_13597.1"; Scaffold009 rebuild exon 547817 547879 . + . gene_id "RvY_13597"; transcript_id "RvY_13597.1"; Scaffold009 rebuild exon 547954 548013 . + . gene_id "RvY_13597"; transcript_id "RvY_13597.1"; Scaffold009 rebuild transcript 548706 550667 . + . gene_id "RvY_13598"; transcript_id "RvY_13598.1"; gene_name "SMYD"; annotation "SET and MYND domain-containing protein"; Pfam "[zf-MYND] MYND finger"; KO "K11426"; Scaffold009 rebuild exon 548706 548779 . + . gene_id "RvY_13598"; transcript_id "RvY_13598.1"; Scaffold009 rebuild exon 548969 549251 . + . gene_id "RvY_13598"; transcript_id "RvY_13598.1"; Scaffold009 rebuild exon 549348 549513 . + . gene_id "RvY_13598"; transcript_id "RvY_13598.1"; Scaffold009 rebuild exon 549790 550667 . + . gene_id "RvY_13598"; transcript_id "RvY_13598.1"; Scaffold009 rebuild transcript 550683 551913 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.1"; annotation "hypothetical protein."; Pfam "[Acetyltransf_10] Acetyltransferase (GNAT) domain|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; Scaffold009 rebuild exon 550683 550955 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.1"; Scaffold009 rebuild exon 551057 551183 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.1"; Scaffold009 rebuild exon 551257 551332 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.1"; Scaffold009 rebuild exon 551393 551535 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.1"; Scaffold009 rebuild exon 551903 551913 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.1"; Scaffold009 rebuild transcript 551349 552045 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.2"; annotation "hypothetical protein."; Pfam "[Acetyltransf_10] Acetyltransferase (GNAT) domain|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; Scaffold009 rebuild exon 551349 551535 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.2"; Scaffold009 rebuild exon 551903 552045 . - . gene_id "RvY_13599"; transcript_id "RvY_13599.2"; Scaffold009 rebuild transcript 553368 553916 . + . gene_id "RvY_13600"; transcript_id "RvY_13600.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 553368 553431 . + . gene_id "RvY_13600"; transcript_id "RvY_13600.1"; Scaffold009 rebuild exon 553651 553916 . + . gene_id "RvY_13600"; transcript_id "RvY_13600.1"; Scaffold009 rebuild transcript 553997 558221 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 553997 554192 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; Scaffold009 rebuild exon 554574 555196 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; Scaffold009 rebuild exon 555447 555988 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; Scaffold009 rebuild exon 556270 557063 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; Scaffold009 rebuild exon 557328 557431 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; Scaffold009 rebuild exon 557691 558221 . + . gene_id "RvY_13601"; transcript_id "RvY_13601.1"; Scaffold009 rebuild transcript 558492 559019 . + . gene_id "RvY_13602"; transcript_id "RvY_13602.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 558492 559019 . + . gene_id "RvY_13602"; transcript_id "RvY_13602.1"; Scaffold009 rebuild transcript 559356 560441 . - . gene_id "RvY_13603"; transcript_id "RvY_13603.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srv] Serpentine type 7TM GPCR chemoreceptor Srv|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold009 rebuild exon 559356 560441 . - . gene_id "RvY_13603"; transcript_id "RvY_13603.1"; Scaffold009 rebuild transcript 561209 561622 . + . gene_id "RvY_13604"; transcript_id "RvY_13604.1"; annotation "hypothetical protein."; Pfam "[SWIM] SWIM zinc finger"; KO "K15716"; Scaffold009 rebuild exon 561209 561364 . + . gene_id "RvY_13604"; transcript_id "RvY_13604.1"; Scaffold009 rebuild exon 561446 561622 . + . gene_id "RvY_13604"; transcript_id "RvY_13604.1"; Scaffold009 rebuild transcript 561857 562357 . + . gene_id "RvY_13605"; transcript_id "RvY_13605.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 561857 562357 . + . gene_id "RvY_13605"; transcript_id "RvY_13605.1"; Scaffold009 rebuild transcript 562993 564037 . - . gene_id "RvY_13606"; transcript_id "RvY_13606.1"; gene_name "idi"; annotation "putative Isopentenyl-diphosphate Delta-isomerase 1"; Pfam "[NUDIX]"; CDD "Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its Scaffold009 rebuild exon 562993 563129 . - . gene_id "RvY_13606"; transcript_id "RvY_13606.1"; Scaffold009 rebuild exon 563279 563874 . - . gene_id "RvY_13606"; transcript_id "RvY_13606.1"; Scaffold009 rebuild exon 563931 564037 . - . gene_id "RvY_13606"; transcript_id "RvY_13606.1"; Scaffold009 rebuild transcript 564254 564583 . - . gene_id "RvY_13607"; transcript_id "RvY_13607.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 564254 564583 . - . gene_id "RvY_13607"; transcript_id "RvY_13607.1"; Scaffold009 rebuild transcript 565848 566180 . + . gene_id "RvY_13608"; transcript_id "RvY_13608.1"; annotation "hypothetical protein."; Pfam "[Rab5ip] Rab5-interacting protein (Rab5ip)"; similar_genes "TMM93_BOVIN(e-value:2.9e-06;bit-score:50.0)"; Scaffold009 rebuild exon 565848 566180 . + . gene_id "RvY_13608"; transcript_id "RvY_13608.1"; Scaffold009 rebuild transcript 566685 569796 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; annotation "hypothetical protein."; Pfam "[DUF647]"; similar_genes "CP058_RAT(e-value:2.1e-15;bit-score:80.0)"; Scaffold009 rebuild exon 566685 566983 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 567164 567486 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 567562 567661 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 567723 567795 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 567883 568021 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 568809 568854 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 568931 569045 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 569113 569190 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 569468 569653 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild exon 569734 569796 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.1"; Scaffold009 rebuild transcript 566685 569836 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; annotation "hypothetical protein."; Pfam "[DUF647]"; similar_genes "CP058_RAT(e-value:2.1e-15;bit-score:80.0)"; Scaffold009 rebuild exon 566685 566983 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 567164 567486 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 567562 567661 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 567723 567795 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 567883 568021 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 568809 568854 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 568931 569045 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 569113 569190 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 569468 569653 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild exon 569789 569836 . - . gene_id "RvY_13609"; transcript_id "RvY_13609.2"; Scaffold009 rebuild transcript 570357 572599 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; annotation "putative UPF0420 protein C16orf58"; Pfam "[DUF647]"; similar_genes "CP058_HUMAN(e-value:2.1e-32;bit-score:137.0)"; Scaffold009 rebuild exon 570357 570535 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 570636 570740 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 570957 571279 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 571348 571441 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 571534 571751 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 571814 571859 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 571950 572064 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 572280 572357 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild exon 572465 572599 . - . gene_id "RvY_13610"; transcript_id "RvY_13610.1"; Scaffold009 rebuild transcript 573933 575251 . + . gene_id "RvY_13611"; transcript_id "RvY_13611.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 573933 574723 . + . gene_id "RvY_13611"; transcript_id "RvY_13611.1"; Scaffold009 rebuild exon 574996 575251 . + . gene_id "RvY_13611"; transcript_id "RvY_13611.1"; Scaffold009 rebuild transcript 575747 576042 . - . gene_id "RvY_13612"; transcript_id "RvY_13612.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 575747 575862 . - . gene_id "RvY_13612"; transcript_id "RvY_13612.1"; Scaffold009 rebuild exon 575985 576042 . - . gene_id "RvY_13612"; transcript_id "RvY_13612.1"; Scaffold009 rebuild transcript 577593 578669 . + . gene_id "RvY_13613"; transcript_id "RvY_13613.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 577593 577728 . + . gene_id "RvY_13613"; transcript_id "RvY_13613.1"; Scaffold009 rebuild exon 578044 578669 . + . gene_id "RvY_13613"; transcript_id "RvY_13613.1"; Scaffold009 rebuild transcript 579167 582122 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 579167 579602 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild exon 579769 579844 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild exon 579918 579991 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild exon 580048 580072 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild exon 580156 580937 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild exon 581156 581438 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild exon 582020 582122 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.1"; Scaffold009 rebuild transcript 579167 582122 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 579167 579602 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 579769 579844 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 579918 579991 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 580048 580072 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 580156 580607 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 580818 580937 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 581156 581438 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild exon 582020 582122 . - . gene_id "RvY_13614"; transcript_id "RvY_13614.2"; Scaffold009 rebuild transcript 582958 583545 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 582958 583017 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.1"; Scaffold009 rebuild exon 583129 583545 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.1"; Scaffold009 rebuild transcript 583093 583545 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 583093 583545 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.2"; Scaffold009 rebuild transcript 583517 583816 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 583517 583816 . - . gene_id "RvY_13615"; transcript_id "RvY_13615.3"; Scaffold009 rebuild transcript 584931 587454 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; gene_name "MAM"; annotation "hypothetical protein."; Pfam "[MAM]|[Sushi] Sushi domain (SCR repeat)"; CDD "Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region."; Scaffold009 rebuild exon 584931 585180 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild exon 585466 585630 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild exon 585706 585942 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild exon 586012 586149 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild exon 586222 586361 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild exon 586428 586473 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild exon 586748 587454 . + . gene_id "RvY_13616"; transcript_id "RvY_13616.1"; Scaffold009 rebuild transcript 587780 593877 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; gene_name "POLG1"; annotation "DNA polymerase subunit gamma-1"; Pfam "[DNA_pol_A] DNA polymerase family A"; EC "EC2.7.7.7"; KO "K02332"; similar_genes "DPOG1_XENLA(e-value:7.3e-54;bit-score:208.0)"; Scaffold009 rebuild exon 587780 588826 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild exon 589116 589431 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild exon 589700 590186 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild exon 590435 590998 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild exon 592253 592541 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild exon 592600 593081 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild exon 593349 593877 . - . gene_id "RvY_13617"; transcript_id "RvY_13617.1"; Scaffold009 rebuild transcript 594361 595094 . + . gene_id "RvY_13618"; transcript_id "RvY_13618.1"; annotation "hypothetical protein."; Pfam "[DUF543]"; similar_genes "CA151_HUMAN(e-value:9.8e-22;bit-score:101.0)"; Scaffold009 rebuild exon 594361 594451 . + . gene_id "RvY_13618"; transcript_id "RvY_13618.1"; Scaffold009 rebuild exon 594664 594848 . + . gene_id "RvY_13618"; transcript_id "RvY_13618.1"; Scaffold009 rebuild exon 594939 595094 . + . gene_id "RvY_13618"; transcript_id "RvY_13618.1"; Scaffold009 rebuild transcript 595349 597032 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.1"; gene_name "2A0303"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease|(1)[AA_permease_C] C-terminus of AA_permease"; CDD "cationic amino acid transport permease."; Scaffold009 rebuild exon 595349 595452 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.1"; Scaffold009 rebuild exon 595654 596396 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.1"; Scaffold009 rebuild exon 596653 597032 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.1"; Scaffold009 rebuild transcript 595577 597032 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.2"; gene_name "2A0303"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease|(1)[AA_permease_C] C-terminus of AA_permease"; CDD "cationic amino acid transport permease."; Scaffold009 rebuild exon 595577 596396 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.2"; Scaffold009 rebuild exon 596653 597032 . - . gene_id "RvY_13619"; transcript_id "RvY_13619.2"; Scaffold009 rebuild transcript 595743 596333 . + . gene_id "RvY_13620"; transcript_id "RvY_13620.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 595743 595901 . + . gene_id "RvY_13620"; transcript_id "RvY_13620.1"; Scaffold009 rebuild exon 596163 596333 . + . gene_id "RvY_13620"; transcript_id "RvY_13620.1"; Scaffold009 rebuild transcript 597333 597837 . - . gene_id "RvY_13621"; transcript_id "RvY_13621.1"; gene_name "(1)2A0303"; annotation "hypothetical protein."; CDD "(1)cationic amino acid transport permease."; Scaffold009 rebuild exon 597333 597500 . - . gene_id "RvY_13621"; transcript_id "RvY_13621.1"; Scaffold009 rebuild exon 597568 597837 . - . gene_id "RvY_13621"; transcript_id "RvY_13621.1"; Scaffold009 rebuild transcript 597439 597837 . - . gene_id "RvY_13621"; transcript_id "RvY_13621.2"; gene_name "(1)2A0303"; annotation "hypothetical protein."; CDD "(1)cationic amino acid transport permease."; Scaffold009 rebuild exon 597439 597837 . - . gene_id "RvY_13621"; transcript_id "RvY_13621.2"; Scaffold009 rebuild transcript 597957 598671 . - . gene_id "RvY_13622"; transcript_id "RvY_13622.1"; gene_name "2A0303"; annotation "hypothetical protein."; CDD "cationic amino acid transport permease."; Scaffold009 rebuild exon 597957 598243 . - . gene_id "RvY_13622"; transcript_id "RvY_13622.1"; Scaffold009 rebuild exon 598554 598671 . - . gene_id "RvY_13622"; transcript_id "RvY_13622.1"; Scaffold009 rebuild transcript 600858 601769 . - . gene_id "RvY_13623"; transcript_id "RvY_13623.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 600858 601769 . - . gene_id "RvY_13623"; transcript_id "RvY_13623.1"; Scaffold009 rebuild transcript 601820 603242 . - . gene_id "RvY_13624"; transcript_id "RvY_13624.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 601820 602328 . - . gene_id "RvY_13624"; transcript_id "RvY_13624.1"; Scaffold009 rebuild exon 602465 602555 . - . gene_id "RvY_13624"; transcript_id "RvY_13624.1"; Scaffold009 rebuild exon 603057 603242 . - . gene_id "RvY_13624"; transcript_id "RvY_13624.1"; Scaffold009 rebuild transcript 603415 608093 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; product "sid-1b"; annotation "sid-1b | putative SID1 transmembrane family member 1"; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; similar_genes "SIDT1_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold009 rebuild exon 603415 603841 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 603960 604284 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 604556 604832 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 604895 605121 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 605320 606042 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 606350 606779 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 606992 607233 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 607323 607427 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild exon 607709 608093 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.1"; Scaffold009 rebuild transcript 603558 608093 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; product "sid-1b"; annotation "sid-1b | putative SID1 transmembrane family member 1"; Pfam "[SID-1_RNA_chan] dsRNA-gated channel SID-1"; similar_genes "SIDT1_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold009 rebuild exon 603558 603602 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 603694 603841 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 603960 604284 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 604556 604832 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 604895 605121 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 605320 606042 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 606350 606779 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 606992 607233 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 607323 607427 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild exon 607709 608093 . - . gene_id "RvY_13625"; transcript_id "RvY_13625.2"; Scaffold009 rebuild transcript 608733 610408 . + . gene_id "RvY_13626"; transcript_id "RvY_13626.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 608733 608759 . + . gene_id "RvY_13626"; transcript_id "RvY_13626.1"; Scaffold009 rebuild exon 610127 610408 . + . gene_id "RvY_13626"; transcript_id "RvY_13626.1"; Scaffold009 rebuild transcript 615754 616950 . + . gene_id "RvY_13627"; transcript_id "RvY_13627.1"; annotation "hypothetical protein."; Pfam "[DGCR6] DiGeorge syndrome critical region 6 (DGCR6) protein"; Scaffold009 rebuild exon 615754 616142 . + . gene_id "RvY_13627"; transcript_id "RvY_13627.1"; Scaffold009 rebuild exon 616313 616420 . + . gene_id "RvY_13627"; transcript_id "RvY_13627.1"; Scaffold009 rebuild exon 616505 616673 . + . gene_id "RvY_13627"; transcript_id "RvY_13627.1"; Scaffold009 rebuild exon 616738 616950 . + . gene_id "RvY_13627"; transcript_id "RvY_13627.1"; Scaffold009 rebuild transcript 617799 619674 . + . gene_id "RvY_13628"; transcript_id "RvY_13628.1"; gene_name "CALR"; annotation "Calreticulin"; Pfam "[Calreticulin] Calreticulin family"; KO "K08057"; similar_genes "CALR_BOMMO(e-value:3.8e-125;bit-score:445.0)"; Scaffold009 rebuild exon 617799 618168 . + . gene_id "RvY_13628"; transcript_id "RvY_13628.1"; Scaffold009 rebuild exon 618448 618749 . + . gene_id "RvY_13628"; transcript_id "RvY_13628.1"; Scaffold009 rebuild exon 618811 618954 . + . gene_id "RvY_13628"; transcript_id "RvY_13628.1"; Scaffold009 rebuild exon 619015 619057 . + . gene_id "RvY_13628"; transcript_id "RvY_13628.1"; Scaffold009 rebuild exon 619289 619674 . + . gene_id "RvY_13628"; transcript_id "RvY_13628.1"; Scaffold009 rebuild transcript 620751 622711 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; annotation "putative Calreticulin"; Pfam "[Calreticulin] Calreticulin family"; similar_genes "CALR_CAEBR(e-value:2.2e-40;bit-score:163.0)"; Scaffold009 rebuild exon 620751 620971 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; Scaffold009 rebuild exon 621248 621552 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; Scaffold009 rebuild exon 621640 621771 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; Scaffold009 rebuild exon 621851 622150 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; Scaffold009 rebuild exon 622213 622290 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; Scaffold009 rebuild exon 622485 622711 . + . gene_id "RvY_13629"; transcript_id "RvY_13629.1"; Scaffold009 rebuild transcript 624101 626145 . - . gene_id "RvY_13630"; transcript_id "RvY_13630.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 624101 624324 . - . gene_id "RvY_13630"; transcript_id "RvY_13630.1"; Scaffold009 rebuild exon 624832 625029 . - . gene_id "RvY_13630"; transcript_id "RvY_13630.1"; Scaffold009 rebuild exon 625099 625255 . - . gene_id "RvY_13630"; transcript_id "RvY_13630.1"; Scaffold009 rebuild exon 625516 625556 . - . gene_id "RvY_13630"; transcript_id "RvY_13630.1"; Scaffold009 rebuild exon 625848 626145 . - . gene_id "RvY_13630"; transcript_id "RvY_13630.1"; Scaffold009 rebuild transcript 626528 626930 . + . gene_id "RvY_13631"; transcript_id "RvY_13631.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 626528 626641 . + . gene_id "RvY_13631"; transcript_id "RvY_13631.1"; Scaffold009 rebuild exon 626724 626930 . + . gene_id "RvY_13631"; transcript_id "RvY_13631.1"; Scaffold009 rebuild transcript 627340 629038 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; gene_name "COG3001"; annotation "(1)hypothetical protein.(2)putative Ketosamine-3-kinase"; Pfam "[APH] Phosphotransferase enzyme family|[Fructosamin_kin] Fructosamine kinase"; CDD "Uncharacterized protein conserved in bacteria [Function unknown]"; EC "EC2.7.1.-"; KO "K15523"; similar_genes "(1)KT3K_MOUSE(e-value:6.6e-23;bit-score:105.0)(2)KT3K_MOUSE(e-value:4.0e-27;bit-score:119.0)"; Scaffold009 rebuild exon 627340 627483 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild exon 627567 627650 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild exon 627847 627950 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild exon 628036 628183 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild exon 628405 628557 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild exon 628616 628816 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild exon 628904 629038 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.1"; Scaffold009 rebuild transcript 627340 629038 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; gene_name "COG3001"; annotation "(1)hypothetical protein.(2)putative Ketosamine-3-kinase"; Pfam "[APH] Phosphotransferase enzyme family|[Fructosamin_kin] Fructosamine kinase"; CDD "Uncharacterized protein conserved in bacteria [Function unknown]"; EC "EC2.7.1.-"; KO "K15523"; similar_genes "(1)KT3K_MOUSE(e-value:6.6e-23;bit-score:105.0)(2)KT3K_MOUSE(e-value:4.0e-27;bit-score:119.0)"; Scaffold009 rebuild exon 627340 627483 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 627567 627650 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 627847 627950 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 628036 628183 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 628405 628557 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 628616 628816 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 628904 628941 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild exon 628993 629038 . + . gene_id "RvY_13632"; transcript_id "RvY_13632.2"; Scaffold009 rebuild transcript 629287 629773 . - . gene_id "RvY_13633"; transcript_id "RvY_13633.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 629287 629370 . - . gene_id "RvY_13633"; transcript_id "RvY_13633.1"; Scaffold009 rebuild exon 629472 629525 . - . gene_id "RvY_13633"; transcript_id "RvY_13633.1"; Scaffold009 rebuild exon 629651 629773 . - . gene_id "RvY_13633"; transcript_id "RvY_13633.1"; Scaffold009 rebuild transcript 630277 631624 . + . gene_id "RvY_13634"; transcript_id "RvY_13634.1"; gene_name "COG5285"; annotation "hypothetical protein."; Pfam "[PhyH] Phytanoyl-CoA dioxygenase (PhyH)"; CDD "Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]"; Scaffold009 rebuild exon 630277 630651 . + . gene_id "RvY_13634"; transcript_id "RvY_13634.1"; Scaffold009 rebuild exon 630830 631034 . + . gene_id "RvY_13634"; transcript_id "RvY_13634.1"; Scaffold009 rebuild exon 631115 631267 . + . gene_id "RvY_13634"; transcript_id "RvY_13634.1"; Scaffold009 rebuild exon 631539 631624 . + . gene_id "RvY_13634"; transcript_id "RvY_13634.1"; Scaffold009 rebuild transcript 632227 635794 . - . gene_id "RvY_13635"; transcript_id "RvY_13635.1"; annotation "hypothetical protein."; similar_genes "K1C9_HUMAN(e-value:3.4e-09;bit-score:60.0)"; Scaffold009 rebuild exon 632227 632480 . - . gene_id "RvY_13635"; transcript_id "RvY_13635.1"; Scaffold009 rebuild exon 632550 632650 . - . gene_id "RvY_13635"; transcript_id "RvY_13635.1"; Scaffold009 rebuild exon 632881 633869 . - . gene_id "RvY_13635"; transcript_id "RvY_13635.1"; Scaffold009 rebuild exon 634222 635468 . - . gene_id "RvY_13635"; transcript_id "RvY_13635.1"; Scaffold009 rebuild exon 635743 635794 . - . gene_id "RvY_13635"; transcript_id "RvY_13635.1"; Scaffold009 rebuild transcript 637187 637970 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.1"; annotation "hypothetical protein."; similar_genes "(2)GRP1_HORVU(e-value:1.6e-11;bit-score:67.0)"; Scaffold009 rebuild exon 637187 637387 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.1"; Scaffold009 rebuild exon 637650 637970 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.1"; Scaffold009 rebuild transcript 637353 638328 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.2"; annotation "hypothetical protein."; similar_genes "(2)GRP1_HORVU(e-value:1.6e-11;bit-score:67.0)"; Scaffold009 rebuild exon 637353 637387 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.2"; Scaffold009 rebuild exon 637650 638060 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.2"; Scaffold009 rebuild exon 638280 638328 . - . gene_id "RvY_13636"; transcript_id "RvY_13636.2"; Scaffold009 rebuild transcript 639938 640917 . + . gene_id "RvY_13637"; transcript_id "RvY_13637.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 639938 640151 . + . gene_id "RvY_13637"; transcript_id "RvY_13637.1"; Scaffold009 rebuild exon 640301 640917 . + . gene_id "RvY_13637"; transcript_id "RvY_13637.1"; Scaffold009 rebuild transcript 642401 643205 . + . gene_id "RvY_13638"; transcript_id "RvY_13638.1"; annotation "hypothetical protein."; similar_genes "GRP1_ARATH(e-value:3.8e-23;bit-score:106.0)"; Scaffold009 rebuild exon 642401 642467 . + . gene_id "RvY_13638"; transcript_id "RvY_13638.1"; Scaffold009 rebuild exon 642584 642676 . + . gene_id "RvY_13638"; transcript_id "RvY_13638.1"; Scaffold009 rebuild exon 642757 643205 . + . gene_id "RvY_13638"; transcript_id "RvY_13638.1"; Scaffold009 rebuild transcript 644491 647573 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; gene_name "CDC20"; annotation "putative Cell division cycle protein 20 homolog"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K03363"; similar_genes "CDC20_RAT(e-value:2.5e-39;bit-score:160.0)"; Scaffold009 rebuild exon 644491 644674 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 644755 645000 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 645106 645243 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 645465 645670 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 645752 645934 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 645998 646165 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 646750 646875 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 646979 647096 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild exon 647392 647573 . + . gene_id "RvY_13639"; transcript_id "RvY_13639.1"; Scaffold009 rebuild transcript 647983 648460 . + . gene_id "RvY_13640"; transcript_id "RvY_13640.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 647983 648135 . + . gene_id "RvY_13640"; transcript_id "RvY_13640.1"; Scaffold009 rebuild exon 648407 648460 . + . gene_id "RvY_13640"; transcript_id "RvY_13640.1"; Scaffold009 rebuild transcript 649428 649797 . + . gene_id "RvY_13641"; transcript_id "RvY_13641.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 649428 649596 . + . gene_id "RvY_13641"; transcript_id "RvY_13641.1"; Scaffold009 rebuild exon 649676 649797 . + . gene_id "RvY_13641"; transcript_id "RvY_13641.1"; Scaffold009 rebuild transcript 649446 649797 . + . gene_id "RvY_13641"; transcript_id "RvY_13641.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 649446 649596 . + . gene_id "RvY_13641"; transcript_id "RvY_13641.2"; Scaffold009 rebuild exon 649676 649797 . + . gene_id "RvY_13641"; transcript_id "RvY_13641.2"; Scaffold009 rebuild transcript 650170 651662 . - . gene_id "RvY_13642"; transcript_id "RvY_13642.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 650170 650615 . - . gene_id "RvY_13642"; transcript_id "RvY_13642.1"; Scaffold009 rebuild exon 650815 651309 . - . gene_id "RvY_13642"; transcript_id "RvY_13642.1"; Scaffold009 rebuild exon 651578 651662 . - . gene_id "RvY_13642"; transcript_id "RvY_13642.1"; Scaffold009 rebuild transcript 653750 653932 . + . gene_id "RvY_13643"; transcript_id "RvY_13643.1"; gene_name "deoA"; annotation "hypothetical protein."; CDD "thymidine phosphorylase; Reviewed"; Scaffold009 rebuild exon 653750 653932 . + . gene_id "RvY_13643"; transcript_id "RvY_13643.1"; Scaffold009 rebuild transcript 653932 654420 . + . gene_id "RvY_13644"; transcript_id "RvY_13644.1"; gene_name "deoA"; annotation "thymidine phosphorylase [EC:2.4.2.4]"; Pfam "[Glycos_trans_3N] Glycosyl transferase family, helical bundle domain"; CDD "pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff."; EC "EC2.4.2.4"; KO "K00758"; Scaffold009 rebuild exon 653932 654070 . + . gene_id "RvY_13644"; transcript_id "RvY_13644.1"; Scaffold009 rebuild exon 654323 654420 . + . gene_id "RvY_13644"; transcript_id "RvY_13644.1"; Scaffold009 rebuild transcript 656144 661324 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; gene_name "PRK12678"; annotation "hypothetical protein."; Pfam "[YLP] YLP motif"; CDD "transcription termination factor Rho; Provisional"; similar_genes "SGS3_DROYA(e-value:7.8e-09;bit-score:58.0)"; Scaffold009 rebuild exon 656144 656206 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; Scaffold009 rebuild exon 656481 656610 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; Scaffold009 rebuild exon 656993 657016 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; Scaffold009 rebuild exon 657236 660332 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; Scaffold009 rebuild exon 660545 660997 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; Scaffold009 rebuild exon 661165 661324 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.1"; Scaffold009 rebuild transcript 657241 660336 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.2"; gene_name "PRK12678"; annotation "hypothetical protein."; Pfam "[YLP] YLP motif"; CDD "transcription termination factor Rho; Provisional"; similar_genes "SGS3_DROYA(e-value:7.8e-09;bit-score:58.0)"; Scaffold009 rebuild exon 657241 660336 . + . gene_id "RvY_13645"; transcript_id "RvY_13645.2"; Scaffold009 rebuild transcript 661903 662271 . - . gene_id "RvY_13646"; transcript_id "RvY_13646.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 661903 662271 . - . gene_id "RvY_13646"; transcript_id "RvY_13646.1"; Scaffold009 rebuild transcript 662748 665851 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 662748 663080 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild exon 664301 664466 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild exon 664575 664642 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild exon 664738 664804 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild exon 665079 665142 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild exon 665451 665479 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild exon 665556 665851 . - . gene_id "RvY_13647"; transcript_id "RvY_13647.1"; Scaffold009 rebuild transcript 666541 666969 . - . gene_id "RvY_13648"; transcript_id "RvY_13648.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 666541 666969 . - . gene_id "RvY_13648"; transcript_id "RvY_13648.1"; Scaffold009 rebuild transcript 667839 668240 . - . gene_id "RvY_13649"; transcript_id "RvY_13649.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 667839 668240 . - . gene_id "RvY_13649"; transcript_id "RvY_13649.1"; Scaffold009 rebuild transcript 669256 669726 . - . gene_id "RvY_13650"; transcript_id "RvY_13650.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 669256 669374 . - . gene_id "RvY_13650"; transcript_id "RvY_13650.1"; Scaffold009 rebuild exon 669690 669726 . - . gene_id "RvY_13650"; transcript_id "RvY_13650.1"; Scaffold009 rebuild transcript 669665 670556 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 669665 669752 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.1"; Scaffold009 rebuild exon 669856 669921 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.1"; Scaffold009 rebuild exon 670003 670106 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.1"; Scaffold009 rebuild exon 670314 670556 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.1"; Scaffold009 rebuild transcript 669665 670078 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 669665 670078 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.2"; Scaffold009 rebuild transcript 669879 670556 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 669879 669921 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.3"; Scaffold009 rebuild exon 670003 670106 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.3"; Scaffold009 rebuild exon 670314 670556 . + . gene_id "RvY_13651"; transcript_id "RvY_13651.3"; Scaffold009 rebuild transcript 671313 678538 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; annotation "hypothetical protein."; Pfam "[DOMON]|[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain"; Scaffold009 rebuild exon 671313 671490 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 671907 673001 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 673240 673293 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 673588 673782 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 673887 674375 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 674661 674950 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 675010 675349 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 675590 676318 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 676397 676483 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 676564 676611 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 676688 676787 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 676853 676968 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 677026 677343 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 677645 677907 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 677984 678423 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild exon 678496 678538 . + . gene_id "RvY_13652"; transcript_id "RvY_13652.1"; Scaffold009 rebuild transcript 679770 686215 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; gene_name "KU"; annotation "hypothetical protein."; Pfam "[Kunitz_BPTI] Kunitz/Bovine pancreatic trypsin inhibitor domain"; CDD "BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein."; similar_genes "KUSPI_HADGE(e-value:1.1e-14;bit-score:78.0)"; Scaffold009 rebuild exon 679770 679875 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 680412 680636 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 680778 680858 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 680943 681033 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 682394 682527 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 682596 682694 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 682768 683031 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 683225 683342 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 683440 683624 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 683710 683868 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 684041 684131 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 684216 684376 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 684723 684839 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 684930 685025 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 685104 685202 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 685290 685445 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 685523 685611 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 685741 685972 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild exon 686049 686215 . + . gene_id "RvY_13653"; transcript_id "RvY_13653.1"; Scaffold009 rebuild transcript 687513 689900 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; gene_name "DEADc"; annotation "hypothetical protein."; Pfam "[DEAD] DEAD/DEAH box helicase"; CDD "DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region."; Scaffold009 rebuild exon 687513 687623 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 687912 688030 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 688115 688286 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 688382 688524 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 688746 688884 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 688985 689146 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 689226 689318 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 689561 689710 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild exon 689817 689900 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.1"; Scaffold009 rebuild transcript 687513 688929 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.2"; gene_name "DEADc"; annotation "hypothetical protein."; Pfam "[DEAD] DEAD/DEAH box helicase"; CDD "DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region."; Scaffold009 rebuild exon 687513 687623 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.2"; Scaffold009 rebuild exon 687912 688030 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.2"; Scaffold009 rebuild exon 688115 688286 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.2"; Scaffold009 rebuild exon 688382 688524 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.2"; Scaffold009 rebuild exon 688746 688929 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.2"; Scaffold009 rebuild transcript 687513 688905 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.3"; gene_name "DEADc"; annotation "hypothetical protein."; Pfam "[DEAD] DEAD/DEAH box helicase"; CDD "DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region."; Scaffold009 rebuild exon 687513 687623 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.3"; Scaffold009 rebuild exon 687912 688030 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.3"; Scaffold009 rebuild exon 688115 688286 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.3"; Scaffold009 rebuild exon 688382 688524 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.3"; Scaffold009 rebuild exon 688743 688905 . - . gene_id "RvY_13654"; transcript_id "RvY_13654.3"; Scaffold009 rebuild transcript 694479 696768 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; gene_name "SMPD2"; annotation "sphingomyelin phosphodiesterase 2 [EC:3.1.4.12]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; EC "EC3.1.4.12"; KO "K12351"; similar_genes "NSMA_CAEEL(e-value:4.1e-14;bit-score:76.0)"; Scaffold009 rebuild exon 694479 694513 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 694587 694689 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 694899 695027 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 695139 695270 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 695348 695417 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 695509 695651 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 695749 695875 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 695941 696066 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild exon 696329 696768 . + . gene_id "RvY_13655"; transcript_id "RvY_13655.1"; Scaffold009 rebuild transcript 696318 696632 . - . gene_id "RvY_13656"; transcript_id "RvY_13656.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 696318 696632 . - . gene_id "RvY_13656"; transcript_id "RvY_13656.1"; Scaffold009 rebuild transcript 697239 697893 . + . gene_id "RvY_13657"; transcript_id "RvY_13657.1"; annotation "hypothetical protein."; Pfam "[Pep_M12B_propep] Reprolysin family propeptide"; Scaffold009 rebuild exon 697239 697759 . + . gene_id "RvY_13657"; transcript_id "RvY_13657.1"; Scaffold009 rebuild exon 697878 697893 . + . gene_id "RvY_13657"; transcript_id "RvY_13657.1"; Scaffold009 rebuild transcript 697239 697763 . + . gene_id "RvY_13657"; transcript_id "RvY_13657.2"; annotation "hypothetical protein."; Pfam "[Pep_M12B_propep] Reprolysin family propeptide"; Scaffold009 rebuild exon 697239 697763 . + . gene_id "RvY_13657"; transcript_id "RvY_13657.2"; Scaffold009 rebuild transcript 698039 699269 . + . gene_id "RvY_13658"; transcript_id "RvY_13658.1"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; Scaffold009 rebuild exon 698039 698420 . + . gene_id "RvY_13658"; transcript_id "RvY_13658.1"; Scaffold009 rebuild exon 698690 698781 . + . gene_id "RvY_13658"; transcript_id "RvY_13658.1"; Scaffold009 rebuild exon 698889 699269 . + . gene_id "RvY_13658"; transcript_id "RvY_13658.1"; Scaffold009 rebuild transcript 702331 704325 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 702331 702524 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 702596 702754 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 702843 702947 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 703051 703170 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 703789 703827 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 703935 704054 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 704123 704245 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild exon 704316 704325 . - . gene_id "RvY_13659"; transcript_id "RvY_13659.1"; Scaffold009 rebuild transcript 705482 707137 . + . gene_id "RvY_13660"; transcript_id "RvY_13660.1"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; Scaffold009 rebuild exon 705482 705712 . + . gene_id "RvY_13660"; transcript_id "RvY_13660.1"; Scaffold009 rebuild exon 705981 706353 . + . gene_id "RvY_13660"; transcript_id "RvY_13660.1"; Scaffold009 rebuild exon 706428 706647 . + . gene_id "RvY_13660"; transcript_id "RvY_13660.1"; Scaffold009 rebuild exon 706864 707137 . + . gene_id "RvY_13660"; transcript_id "RvY_13660.1"; Scaffold009 rebuild transcript 707209 709055 . + . gene_id "RvY_13661"; transcript_id "RvY_13661.1"; gene_name "ZnMc_ADAMTS_like"; annotation "hypothetical protein."; Pfam "[Reprolysin_2] Metallo-peptidase family M12B Reprolysin-like|[Peptidase_M84] Metallo-peptidase family M84|[Pep_M12B_propep] Reprolysin family propeptide|[Reprolysin] Reprolysin (M12B) family zinc metalloprotease|[Reprolysin_3] Metallo-peptidase family M12B Reprolysin-like|[Reprolysin_4] Metallo-peptidase family M12B Reprolysin-like"; CDD "Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix."; Scaffold009 rebuild exon 707209 707744 . + . gene_id "RvY_13661"; transcript_id "RvY_13661.1"; Scaffold009 rebuild exon 708120 708688 . + . gene_id "RvY_13661"; transcript_id "RvY_13661.1"; Scaffold009 rebuild exon 708772 709055 . + . gene_id "RvY_13661"; transcript_id "RvY_13661.1"; Scaffold009 rebuild transcript 710370 711956 . + . gene_id "RvY_13662"; transcript_id "RvY_13662.1"; gene_name "PRK10673"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "hypothetical protein; Provisional"; Scaffold009 rebuild exon 710370 710614 . + . gene_id "RvY_13662"; transcript_id "RvY_13662.1"; Scaffold009 rebuild exon 710692 710733 . + . gene_id "RvY_13662"; transcript_id "RvY_13662.1"; Scaffold009 rebuild exon 710805 711144 . + . gene_id "RvY_13662"; transcript_id "RvY_13662.1"; Scaffold009 rebuild exon 711378 711551 . + . gene_id "RvY_13662"; transcript_id "RvY_13662.1"; Scaffold009 rebuild exon 711621 711956 . + . gene_id "RvY_13662"; transcript_id "RvY_13662.1"; Scaffold009 rebuild transcript 712998 713339 . - . gene_id "RvY_13663"; transcript_id "RvY_13663.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 712998 713170 . - . gene_id "RvY_13663"; transcript_id "RvY_13663.1"; Scaffold009 rebuild exon 713252 713339 . - . gene_id "RvY_13663"; transcript_id "RvY_13663.1"; Scaffold009 rebuild transcript 715952 716716 . + . gene_id "RvY_13664"; transcript_id "RvY_13664.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 715952 716074 . + . gene_id "RvY_13664"; transcript_id "RvY_13664.1"; Scaffold009 rebuild exon 716145 716298 . + . gene_id "RvY_13664"; transcript_id "RvY_13664.1"; Scaffold009 rebuild exon 716490 716716 . + . gene_id "RvY_13664"; transcript_id "RvY_13664.1"; Scaffold009 rebuild transcript 717025 718076 . - . gene_id "RvY_13665"; transcript_id "RvY_13665.1"; annotation "hypothetical protein."; Pfam "[RIIa] Regulatory subunit of type II PKA R-subunit"; Scaffold009 rebuild exon 717025 717326 . - . gene_id "RvY_13665"; transcript_id "RvY_13665.1"; Scaffold009 rebuild exon 717531 717713 . - . gene_id "RvY_13665"; transcript_id "RvY_13665.1"; Scaffold009 rebuild exon 717821 718076 . - . gene_id "RvY_13665"; transcript_id "RvY_13665.1"; Scaffold009 rebuild transcript 718503 719177 . - . gene_id "RvY_13666"; transcript_id "RvY_13666.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 718503 718570 . - . gene_id "RvY_13666"; transcript_id "RvY_13666.1"; Scaffold009 rebuild exon 718870 719031 . - . gene_id "RvY_13666"; transcript_id "RvY_13666.1"; Scaffold009 rebuild exon 719120 719177 . - . gene_id "RvY_13666"; transcript_id "RvY_13666.1"; Scaffold009 rebuild transcript 719944 723227 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; gene_name "CDT1"; annotation "chromatin licensing and DNA replication factor 1"; Pfam "[CDT1] DNA replication factor CDT1 like"; KO "K10727"; Scaffold009 rebuild exon 719944 720107 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; Scaffold009 rebuild exon 720190 720278 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; Scaffold009 rebuild exon 720650 721363 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; Scaffold009 rebuild exon 721677 721865 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; Scaffold009 rebuild exon 722067 722485 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; Scaffold009 rebuild exon 722751 723227 . - . gene_id "RvY_13667"; transcript_id "RvY_13667.1"; Scaffold009 rebuild transcript 724030 724792 . + . gene_id "RvY_13668"; transcript_id "RvY_13668.1"; gene_name "Commd2"; annotation "hypothetical protein."; Pfam "[HCaRG] HCaRG protein"; CDD "COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB."; Scaffold009 rebuild exon 724030 724263 . + . gene_id "RvY_13668"; transcript_id "RvY_13668.1"; Scaffold009 rebuild exon 724343 724516 . + . gene_id "RvY_13668"; transcript_id "RvY_13668.1"; Scaffold009 rebuild exon 724592 724792 . + . gene_id "RvY_13668"; transcript_id "RvY_13668.1"; Scaffold009 rebuild transcript 726161 727625 . + . gene_id "RvY_13669"; transcript_id "RvY_13669.1"; gene_name "K06883"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[ATP_bind_1] Conserved hypothetical ATP binding protein"; KO "K06883"; similar_genes "GPN2_DANRE(e-value:1.3e-21;bit-score:101.0)"; Scaffold009 rebuild exon 726161 726515 . + . gene_id "RvY_13669"; transcript_id "RvY_13669.1"; Scaffold009 rebuild exon 726659 727056 . + . gene_id "RvY_13669"; transcript_id "RvY_13669.1"; Scaffold009 rebuild exon 727266 727364 . + . gene_id "RvY_13669"; transcript_id "RvY_13669.1"; Scaffold009 rebuild exon 727428 727625 . + . gene_id "RvY_13669"; transcript_id "RvY_13669.1"; Scaffold009 rebuild transcript 727712 730368 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[UTP15_C] UTP15 C terminal"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K14549"; similar_genes "UTP15_CHICK(e-value:8.8e-25;bit-score:111.0)"; Scaffold009 rebuild exon 727712 727950 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 728015 728207 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 728290 728391 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 728589 728747 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 728809 729029 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 729217 729397 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 729458 729581 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 729679 729761 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 729845 729946 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 730108 730200 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild exon 730279 730368 . - . gene_id "RvY_13670"; transcript_id "RvY_13670.1"; Scaffold009 rebuild transcript 730985 733247 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; gene_name "GH18_SI-CLP"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages."; similar_genes "CHID1_DICDI(e-value:1.0e-06;bit-score:51.0)"; Scaffold009 rebuild exon 730985 731077 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 731220 731411 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 731523 731658 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 731798 731842 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 731913 732019 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 732110 732174 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 732269 732361 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 732437 732535 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 732630 732791 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 732862 732939 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 733007 733119 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild exon 733219 733247 . + . gene_id "RvY_13671"; transcript_id "RvY_13671.1"; Scaffold009 rebuild transcript 734633 738740 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; gene_name "NEDD4"; annotation "E3 ubiquitin-protein ligase Nedd-4"; Pfam "[WW]|[HECT] HECT-domain (ubiquitin-transferase)|[C2]"; CDD "Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10591"; similar_genes "NEDD4_DROME(e-value:6.6e-197;bit-score:683.0)"; Scaffold009 rebuild exon 734633 734749 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 734812 734991 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 735263 735323 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 735393 735834 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 736034 736238 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 736319 736549 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 736625 736738 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 737055 737350 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 737414 737606 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 737691 737981 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 738057 738164 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 738417 738586 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild exon 738638 738740 . + . gene_id "RvY_13672"; transcript_id "RvY_13672.1"; Scaffold009 rebuild transcript 739530 741497 . - . gene_id "RvY_13673"; transcript_id "RvY_13673.1"; annotation "hypothetical protein."; Pfam "[LicD] LicD family"; EC "EC2.-.-.-"; similar_genes "FKRP_MOUSE(e-value:6.0e-11;bit-score:65.0)"; Scaffold009 rebuild exon 739530 739996 . - . gene_id "RvY_13673"; transcript_id "RvY_13673.1"; Scaffold009 rebuild exon 740167 740778 . - . gene_id "RvY_13673"; transcript_id "RvY_13673.1"; Scaffold009 rebuild exon 741059 741497 . - . gene_id "RvY_13673"; transcript_id "RvY_13673.1"; Scaffold009 rebuild transcript 742363 743831 . + . gene_id "RvY_13674"; transcript_id "RvY_13674.1"; annotation "hypothetical protein."; Pfam "[Frag1] Frag1/DRAM/Sfk1 family"; Scaffold009 rebuild exon 742363 742573 . + . gene_id "RvY_13674"; transcript_id "RvY_13674.1"; Scaffold009 rebuild exon 742642 742757 . + . gene_id "RvY_13674"; transcript_id "RvY_13674.1"; Scaffold009 rebuild exon 742964 743089 . + . gene_id "RvY_13674"; transcript_id "RvY_13674.1"; Scaffold009 rebuild exon 743316 743831 . + . gene_id "RvY_13674"; transcript_id "RvY_13674.1"; Scaffold009 rebuild transcript 744158 745777 . - . gene_id "RvY_13675"; transcript_id "RvY_13675.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 744158 745777 . - . gene_id "RvY_13675"; transcript_id "RvY_13675.1"; Scaffold009 rebuild transcript 748777 752736 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; gene_name "DHX15"; annotation "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[OB_NTP_bind] Oligonucleotide/oligosaccharide-binding (OB)-fold|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; EC "EC3.6.1.-"; KO "K12820"; similar_genes "DHX15_MOUSE(e-value:0.0e+00;bit-score:1099.0)"; Scaffold009 rebuild exon 748777 748897 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 748978 749147 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 749324 749514 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 749585 749707 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 750214 750405 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 750470 750728 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 751035 751289 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 751550 752128 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 752319 752580 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild exon 752681 752736 . - . gene_id "RvY_13676"; transcript_id "RvY_13676.1"; Scaffold009 rebuild transcript 752910 753092 . + . gene_id "RvY_13677"; transcript_id "RvY_13677.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 752910 753092 . + . gene_id "RvY_13677"; transcript_id "RvY_13677.1"; Scaffold009 rebuild transcript 753851 755464 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; annotation "hypothetical protein."; Pfam "[Motile_Sperm] MSP (Major sperm protein) domain"; Scaffold009 rebuild exon 753851 753868 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; Scaffold009 rebuild exon 753951 754024 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; Scaffold009 rebuild exon 754398 754558 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; Scaffold009 rebuild exon 754617 754652 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; Scaffold009 rebuild exon 754763 755049 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; Scaffold009 rebuild exon 755321 755464 . + . gene_id "RvY_13678"; transcript_id "RvY_13678.1"; Scaffold009 rebuild transcript 756069 756472 . + . gene_id "RvY_13679"; transcript_id "RvY_13679.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 756069 756350 . + . gene_id "RvY_13679"; transcript_id "RvY_13679.1"; Scaffold009 rebuild exon 756392 756472 . + . gene_id "RvY_13679"; transcript_id "RvY_13679.1"; Scaffold009 rebuild transcript 756737 759122 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; annotation "hypothetical protein."; Pfam "[PHD] PHD-finger"; Scaffold009 rebuild exon 756737 757192 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 757431 757584 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 757660 757778 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 757919 758003 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 758239 758331 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 758465 758522 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 758590 758791 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild exon 758982 759122 . + . gene_id "RvY_13680"; transcript_id "RvY_13680.1"; Scaffold009 rebuild transcript 760961 761983 . - . gene_id "RvY_13681"; transcript_id "RvY_13681.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 760961 760971 . - . gene_id "RvY_13681"; transcript_id "RvY_13681.1"; Scaffold009 rebuild exon 761055 761124 . - . gene_id "RvY_13681"; transcript_id "RvY_13681.1"; Scaffold009 rebuild exon 761211 761626 . - . gene_id "RvY_13681"; transcript_id "RvY_13681.1"; Scaffold009 rebuild exon 761803 761983 . - . gene_id "RvY_13681"; transcript_id "RvY_13681.1"; Scaffold009 rebuild transcript 762293 763286 . + . gene_id "RvY_13682"; transcript_id "RvY_13682.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 762293 762485 . + . gene_id "RvY_13682"; transcript_id "RvY_13682.1"; Scaffold009 rebuild exon 762591 762642 . + . gene_id "RvY_13682"; transcript_id "RvY_13682.1"; Scaffold009 rebuild exon 762757 762886 . + . gene_id "RvY_13682"; transcript_id "RvY_13682.1"; Scaffold009 rebuild exon 762960 763106 . + . gene_id "RvY_13682"; transcript_id "RvY_13682.1"; Scaffold009 rebuild exon 763173 763286 . + . gene_id "RvY_13682"; transcript_id "RvY_13682.1"; Scaffold009 rebuild transcript 763533 769827 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; gene_name "MYSc"; annotation "hypothetical protein."; Pfam "[Myosin_head] Myosin head (motor domain)|(1,2,4)[SH2]"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; similar_genes "(1,2,3)MYOI_DICDI(e-value:2.5e-20;bit-score:97.0)"; Scaffold009 rebuild exon 763533 763697 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 763789 763866 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 763940 764110 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 764305 764461 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 764541 764697 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 764768 765008 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 765214 765322 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 765395 765615 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 765702 765788 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 765861 766376 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 766620 767073 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 767279 767606 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 768938 769030 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 769257 769446 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild exon 769735 769827 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.1"; Scaffold009 rebuild transcript 763533 769509 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; gene_name "MYSc"; annotation "hypothetical protein."; Pfam "[Myosin_head] Myosin head (motor domain)|(1,2,4)[SH2]"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; similar_genes "(1,2,3)MYOI_DICDI(e-value:2.5e-20;bit-score:97.0)"; Scaffold009 rebuild exon 763533 763697 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 763789 763866 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 763940 764110 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 764302 764461 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 764541 764697 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 764768 765008 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 765214 765322 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 765395 765615 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 765702 765788 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 765861 766376 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 766620 766739 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 766803 767073 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 767279 767606 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 768938 769030 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild exon 769257 769509 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.2"; Scaffold009 rebuild transcript 763533 766403 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; gene_name "MYSc"; annotation "hypothetical protein."; Pfam "[Myosin_head] Myosin head (motor domain)|(1,2,4)[SH2]"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; similar_genes "(1,2,3)MYOI_DICDI(e-value:2.5e-20;bit-score:97.0)"; Scaffold009 rebuild exon 763533 763697 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 763789 763866 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 763940 764110 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 764305 764461 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 764541 764697 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 764768 765008 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 765214 765322 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 765395 765615 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 765702 765788 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild exon 765861 766403 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.3"; Scaffold009 rebuild transcript 765509 769827 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; gene_name "MYSc"; annotation "hypothetical protein."; Pfam "[Myosin_head] Myosin head (motor domain)|(1,2,4)[SH2]"; CDD "Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin."; similar_genes "(1,2,3)MYOI_DICDI(e-value:2.5e-20;bit-score:97.0)"; Scaffold009 rebuild exon 765509 765550 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 765702 765788 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 765861 766134 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 766192 766376 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 766620 767073 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 767279 767606 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 768938 769030 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 769257 769446 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild exon 769735 769827 . + . gene_id "RvY_13683"; transcript_id "RvY_13683.4"; Scaffold009 rebuild transcript 770297 772006 . - . gene_id "RvY_13684"; transcript_id "RvY_13684.1"; gene_name "SH2"; annotation "hypothetical protein."; Pfam "[SH2]"; CDD "Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites."; Scaffold009 rebuild exon 770297 770483 . - . gene_id "RvY_13684"; transcript_id "RvY_13684.1"; Scaffold009 rebuild exon 771111 771233 . - . gene_id "RvY_13684"; transcript_id "RvY_13684.1"; Scaffold009 rebuild exon 771321 772006 . - . gene_id "RvY_13684"; transcript_id "RvY_13684.1"; Scaffold009 rebuild transcript 774581 784230 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin_2] Cadherin-like|[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "(1)PCDGJ_PANTR(e-value:7.8e-09;bit-score:58.0)(2,3)CAD23_MOUSE(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 774581 774946 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 775132 775524 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 775624 775746 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 775997 776227 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 776293 776508 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 776865 777580 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 777833 777991 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 778050 778380 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 778459 778644 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 778916 779440 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 779618 780011 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 780288 780622 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 780706 780824 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 781668 782247 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 782522 782857 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 783219 783790 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild exon 784038 784230 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.1"; Scaffold009 rebuild transcript 774581 780798 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin_2] Cadherin-like|[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "(1)PCDGJ_PANTR(e-value:7.8e-09;bit-score:58.0)(2,3)CAD23_MOUSE(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 774581 774946 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 775132 775524 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 775624 775746 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 775997 776227 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 776293 776508 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 776865 777580 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 777833 777991 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 778050 778380 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 778459 778644 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 778916 779440 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 779618 780011 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 780288 780622 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild exon 780706 780798 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.2"; Scaffold009 rebuild transcript 774581 780598 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin_2] Cadherin-like|[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; similar_genes "(1)PCDGJ_PANTR(e-value:7.8e-09;bit-score:58.0)(2,3)CAD23_MOUSE(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 774581 774946 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 775132 775524 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 775624 775746 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 775997 776227 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 776293 776508 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 776865 777580 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 777833 777991 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 778050 778380 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 778459 778644 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 778916 779440 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 779618 779683 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 779756 780011 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild exon 780288 780598 . - . gene_id "RvY_13685"; transcript_id "RvY_13685.3"; Scaffold009 rebuild transcript 786977 787537 . - . gene_id "RvY_13686"; transcript_id "RvY_13686.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 786977 787062 . - . gene_id "RvY_13686"; transcript_id "RvY_13686.1"; Scaffold009 rebuild exon 787144 787269 . - . gene_id "RvY_13686"; transcript_id "RvY_13686.1"; Scaffold009 rebuild exon 787345 787392 . - . gene_id "RvY_13686"; transcript_id "RvY_13686.1"; Scaffold009 rebuild exon 787468 787537 . - . gene_id "RvY_13686"; transcript_id "RvY_13686.1"; Scaffold009 rebuild transcript 788212 790395 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold009 rebuild exon 788212 788534 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; Scaffold009 rebuild exon 788620 789003 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; Scaffold009 rebuild exon 789452 789609 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; Scaffold009 rebuild exon 789681 789835 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; Scaffold009 rebuild exon 790015 790226 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; Scaffold009 rebuild exon 790320 790395 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.1"; Scaffold009 rebuild transcript 788212 789372 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.2"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold009 rebuild exon 788212 788534 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.2"; Scaffold009 rebuild exon 788620 789003 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.2"; Scaffold009 rebuild exon 789339 789372 . - . gene_id "RvY_13687"; transcript_id "RvY_13687.2"; Scaffold009 rebuild transcript 790575 792436 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold009 rebuild exon 790575 790921 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; Scaffold009 rebuild exon 790985 791356 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; Scaffold009 rebuild exon 791653 791810 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; Scaffold009 rebuild exon 791868 792022 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; Scaffold009 rebuild exon 792091 792257 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; Scaffold009 rebuild exon 792346 792436 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.1"; Scaffold009 rebuild transcript 790575 792186 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.2"; annotation "hypothetical protein."; Pfam "[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; Scaffold009 rebuild exon 790575 790921 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.2"; Scaffold009 rebuild exon 790985 791356 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.2"; Scaffold009 rebuild exon 791653 791810 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.2"; Scaffold009 rebuild exon 791868 792022 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.2"; Scaffold009 rebuild exon 792091 792186 . - . gene_id "RvY_13688"; transcript_id "RvY_13688.2"; Scaffold009 rebuild transcript 792911 797005 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; annotation "hypothetical protein."; Pfam "[Clathrin] Region in Clathrin and VPS|[CNH]|[Vps39_1] Vacuolar sorting protein 39 domain 1|[Vps39_2] Vacuolar sorting protein 39 domain 2"; similar_genes "VPS39_MOUSE(e-value:9.4e-16;bit-score:81.0)"; Scaffold009 rebuild exon 792911 792977 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 793036 793458 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 793697 793799 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 793892 794195 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 794260 794420 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 794618 794879 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 794954 795226 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 795366 795797 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 796075 796170 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 796235 796279 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 796340 796558 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 796617 796687 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 796776 796853 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild exon 796933 797005 . - . gene_id "RvY_13689"; transcript_id "RvY_13689.1"; Scaffold009 rebuild transcript 797522 797701 . - . gene_id "RvY_13690"; transcript_id "RvY_13690.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 797522 797701 . - . gene_id "RvY_13690"; transcript_id "RvY_13690.1"; Scaffold009 rebuild transcript 797568 799125 . + . gene_id "RvY_13691"; transcript_id "RvY_13691.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 797568 797766 . + . gene_id "RvY_13691"; transcript_id "RvY_13691.1"; Scaffold009 rebuild exon 798016 798386 . + . gene_id "RvY_13691"; transcript_id "RvY_13691.1"; Scaffold009 rebuild exon 798709 799125 . + . gene_id "RvY_13691"; transcript_id "RvY_13691.1"; Scaffold009 rebuild transcript 799806 800192 . + . gene_id "RvY_13692"; transcript_id "RvY_13692.1"; annotation "hypothetical protein."; similar_genes "KRCL_CHICK(e-value:1.7e-06;bit-score:51.0)"; Scaffold009 rebuild exon 799806 800192 . + . gene_id "RvY_13692"; transcript_id "RvY_13692.1"; Scaffold009 rebuild transcript 801005 802562 . - . gene_id "RvY_13693"; transcript_id "RvY_13693.1"; gene_name "DUS4"; annotation "tRNA-dihydrouridine synthase 4 [EC:1.-.-.-]"; Pfam "[Dus] Dihydrouridine synthase (Dus)"; CDD "Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present."; EC "EC1.-.-.-"; KO "K05545"; similar_genes "DUS4L_MOUSE(e-value:8.2e-17;bit-score:85.0)"; Scaffold009 rebuild exon 801005 801524 . - . gene_id "RvY_13693"; transcript_id "RvY_13693.1"; Scaffold009 rebuild exon 801773 801919 . - . gene_id "RvY_13693"; transcript_id "RvY_13693.1"; Scaffold009 rebuild exon 802005 802046 . - . gene_id "RvY_13693"; transcript_id "RvY_13693.1"; Scaffold009 rebuild exon 802116 802313 . - . gene_id "RvY_13693"; transcript_id "RvY_13693.1"; Scaffold009 rebuild exon 802396 802562 . - . gene_id "RvY_13693"; transcript_id "RvY_13693.1"; Scaffold009 rebuild transcript 803148 807053 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; gene_name "ERCC5"; annotation "DNA excision repair protein ERCC-5"; Pfam "[XPG_I] XPG I-region|[XPG_N] XPG N-terminal domain"; CDD "DNA excision repair protein (rad2). All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; EC "EC3.1.-.-"; KO "K10846"; similar_genes "ERCC5_MOUSE(e-value:1.7e-21;bit-score:100.0)"; Scaffold009 rebuild exon 803148 803723 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; Scaffold009 rebuild exon 803886 804741 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; Scaffold009 rebuild exon 804943 805213 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; Scaffold009 rebuild exon 805273 805633 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; Scaffold009 rebuild exon 805700 805913 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; Scaffold009 rebuild exon 806218 807053 . + . gene_id "RvY_13694"; transcript_id "RvY_13694.1"; Scaffold009 rebuild transcript 807593 811164 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; annotation "hypothetical protein."; Pfam "[Sad1_UNC] Sad1 / UNC-like C-terminal"; similar_genes "UN84A_HUMAN(e-value:1.8e-10;bit-score:64.0)"; Scaffold009 rebuild exon 807593 807724 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 807788 808045 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 808195 808310 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 808382 808526 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 808602 808724 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 808797 808937 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 809279 809415 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 809485 809588 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 809668 809728 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 809930 810190 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 810248 810451 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 810520 810698 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 810985 811023 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild exon 811094 811164 . - . gene_id "RvY_13695"; transcript_id "RvY_13695.1"; Scaffold009 rebuild transcript 814067 816081 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; annotation "hypothetical protein."; Pfam "[zf-C3HC] C3HC zinc finger-like"; Scaffold009 rebuild exon 814067 814246 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild exon 814576 814897 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild exon 814979 815100 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild exon 815197 815318 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild exon 815418 815501 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild exon 815606 815783 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild exon 815857 816081 . - . gene_id "RvY_13696"; transcript_id "RvY_13696.1"; Scaffold009 rebuild transcript 816603 817075 . + . gene_id "RvY_13697"; transcript_id "RvY_13697.1"; gene_name "SNRPD3"; annotation "putative Small nuclear ribonucleoprotein Sm D3"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K11088"; similar_genes "SMD3_HUMAN(e-value:2.4e-33;bit-score:140.0)"; Scaffold009 rebuild exon 816603 816942 . + . gene_id "RvY_13697"; transcript_id "RvY_13697.1"; Scaffold009 rebuild exon 817011 817075 . + . gene_id "RvY_13697"; transcript_id "RvY_13697.1"; Scaffold009 rebuild transcript 817626 819696 . - . gene_id "RvY_13698"; transcript_id "RvY_13698.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold009 rebuild exon 817626 818426 . - . gene_id "RvY_13698"; transcript_id "RvY_13698.1"; Scaffold009 rebuild exon 818642 818715 . - . gene_id "RvY_13698"; transcript_id "RvY_13698.1"; Scaffold009 rebuild exon 818837 818876 . - . gene_id "RvY_13698"; transcript_id "RvY_13698.1"; Scaffold009 rebuild exon 819230 819436 . - . gene_id "RvY_13698"; transcript_id "RvY_13698.1"; Scaffold009 rebuild exon 819529 819696 . - . gene_id "RvY_13698"; transcript_id "RvY_13698.1"; Scaffold009 rebuild transcript 819074 819457 . + . gene_id "RvY_13699"; transcript_id "RvY_13699.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 819074 819091 . + . gene_id "RvY_13699"; transcript_id "RvY_13699.1"; Scaffold009 rebuild exon 819317 819457 . + . gene_id "RvY_13699"; transcript_id "RvY_13699.1"; Scaffold009 rebuild transcript 824006 828466 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; gene_name "USP43"; annotation "ubiquitin carboxyl-terminal hydrolase 43 [EC:3.1.2.15]"; Pfam "[UCH_1] Ubiquitin carboxyl-terminal hydrolase|[UCH] Ubiquitin carboxyl-terminal hydrolase"; CDD "Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.1.2.15"; KO "K11856"; similar_genes "UBP31_HUMAN(e-value:1.7e-06;bit-score:51.0)"; Scaffold009 rebuild exon 824006 824370 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 824634 824876 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 824992 825250 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 825602 826071 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 826361 826919 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 827099 827470 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 827550 827765 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild exon 828281 828466 . - . gene_id "RvY_13700"; transcript_id "RvY_13700.1"; Scaffold009 rebuild transcript 828555 828770 . + . gene_id "RvY_13701"; transcript_id "RvY_13701.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 828555 828770 . + . gene_id "RvY_13701"; transcript_id "RvY_13701.1"; Scaffold009 rebuild transcript 829382 830430 . + . gene_id "RvY_13702"; transcript_id "RvY_13702.1"; annotation "hypothetical protein."; Pfam "[DUF1077]"; similar_genes "TMM85_XENTR(e-value:1.8e-10;bit-score:64.0)"; Scaffold009 rebuild exon 829382 829479 . + . gene_id "RvY_13702"; transcript_id "RvY_13702.1"; Scaffold009 rebuild exon 829573 829723 . + . gene_id "RvY_13702"; transcript_id "RvY_13702.1"; Scaffold009 rebuild exon 829935 830088 . + . gene_id "RvY_13702"; transcript_id "RvY_13702.1"; Scaffold009 rebuild exon 830175 830332 . + . gene_id "RvY_13702"; transcript_id "RvY_13702.1"; Scaffold009 rebuild exon 830398 830430 . + . gene_id "RvY_13702"; transcript_id "RvY_13702.1"; Scaffold009 rebuild transcript 831351 834261 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; gene_name "metF"; annotation "putative Methylenetetrahydrofolate reductase"; Pfam "[MTHFR] Methylenetetrahydrofolate reductase"; EC "EC1.5.1.20"; KO "K00297"; similar_genes "MTHR_MOUSE(e-value:4.6e-45;bit-score:179.0)"; Scaffold009 rebuild exon 831351 831601 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 831750 831988 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 832107 832223 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 832317 832510 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 832791 833534 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 833606 833704 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 833905 834021 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild exon 834085 834261 . + . gene_id "RvY_13703"; transcript_id "RvY_13703.1"; Scaffold009 rebuild transcript 834590 836259 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; gene_name "K07152"; annotation "putative Protein SCO1 homolog, mitochondrial"; Pfam "[SCO1-SenC] SCO1/SenC"; CDD "SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II."; KO "K07152"; similar_genes "SCO1_BOVIN(e-value:5.3e-29;bit-score:125.0)"; Scaffold009 rebuild exon 834590 834843 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; Scaffold009 rebuild exon 834902 834994 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; Scaffold009 rebuild exon 835293 835490 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; Scaffold009 rebuild exon 835561 835651 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; Scaffold009 rebuild exon 835841 836047 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; Scaffold009 rebuild exon 836167 836259 . - . gene_id "RvY_13704"; transcript_id "RvY_13704.1"; Scaffold009 rebuild transcript 838601 839574 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 838601 838752 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.1"; Scaffold009 rebuild exon 838860 838934 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.1"; Scaffold009 rebuild exon 839208 839574 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.1"; Scaffold009 rebuild transcript 838852 839574 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 838852 838934 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.2"; Scaffold009 rebuild exon 839208 839574 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.2"; Scaffold009 rebuild transcript 838591 839360 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 838591 838752 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.3"; Scaffold009 rebuild exon 838860 838934 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.3"; Scaffold009 rebuild exon 839208 839360 . - . gene_id "RvY_13705"; transcript_id "RvY_13705.3"; Scaffold009 rebuild transcript 839930 840451 . - . gene_id "RvY_13706"; transcript_id "RvY_13706.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 839930 840097 . - . gene_id "RvY_13706"; transcript_id "RvY_13706.1"; Scaffold009 rebuild exon 840386 840451 . - . gene_id "RvY_13706"; transcript_id "RvY_13706.1"; Scaffold009 rebuild transcript 841145 844085 . + . gene_id "RvY_13707"; transcript_id "RvY_13707.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 841145 841600 . + . gene_id "RvY_13707"; transcript_id "RvY_13707.1"; Scaffold009 rebuild exon 841940 842228 . + . gene_id "RvY_13707"; transcript_id "RvY_13707.1"; Scaffold009 rebuild exon 842527 843038 . + . gene_id "RvY_13707"; transcript_id "RvY_13707.1"; Scaffold009 rebuild exon 843225 843562 . + . gene_id "RvY_13707"; transcript_id "RvY_13707.1"; Scaffold009 rebuild exon 843824 844085 . + . gene_id "RvY_13707"; transcript_id "RvY_13707.1"; Scaffold009 rebuild transcript 847008 849851 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 847008 847106 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; Scaffold009 rebuild exon 847470 847786 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; Scaffold009 rebuild exon 847851 847910 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; Scaffold009 rebuild exon 847981 848105 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; Scaffold009 rebuild exon 849089 849415 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; Scaffold009 rebuild exon 849658 849851 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.1"; Scaffold009 rebuild transcript 847008 849691 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 847008 847106 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; Scaffold009 rebuild exon 847470 847786 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; Scaffold009 rebuild exon 847851 847910 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; Scaffold009 rebuild exon 847981 848105 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; Scaffold009 rebuild exon 849089 849416 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; Scaffold009 rebuild exon 849658 849691 . + . gene_id "RvY_13708"; transcript_id "RvY_13708.2"; Scaffold009 rebuild transcript 850215 852495 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 850215 850716 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; Scaffold009 rebuild exon 851034 851252 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; Scaffold009 rebuild exon 851325 851609 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; Scaffold009 rebuild exon 851687 851806 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; Scaffold009 rebuild exon 852072 852220 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; Scaffold009 rebuild exon 852283 852495 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.1"; Scaffold009 rebuild transcript 850215 851614 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 850215 850716 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.2"; Scaffold009 rebuild exon 851034 851252 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.2"; Scaffold009 rebuild exon 851325 851614 . + . gene_id "RvY_13709"; transcript_id "RvY_13709.2"; Scaffold009 rebuild transcript 856327 866346 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; gene_name "APC"; annotation "adenomatosis polyposis coli protein"; Pfam "[Arm] Armadillo/beta-catenin-like repeat"; CDD "Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model."; KO "K02085"; Scaffold009 rebuild exon 856327 856604 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 857554 857812 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 857913 858107 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 858390 858729 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 858972 859363 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 859834 860063 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 860469 860970 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 861348 861813 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 862148 862624 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 862767 863141 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 863219 864136 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 864421 865008 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 865370 865566 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild exon 865789 866346 . + . gene_id "RvY_13710"; transcript_id "RvY_13710.1"; Scaffold009 rebuild transcript 867151 867682 . - . gene_id "RvY_13711"; transcript_id "RvY_13711.1"; gene_name "Eclosion"; annotation "hypothetical protein."; Pfam "[Eclosion] Eclosion hormone"; CDD "Eclosion hormone. Eclosion hormone is an insect neuropeptide that triggers the performance of ecdysis behaviour, which causes shedding of the old cuticle at the end of a molt."; Scaffold009 rebuild exon 867151 867259 . - . gene_id "RvY_13711"; transcript_id "RvY_13711.1"; Scaffold009 rebuild exon 867423 867480 . - . gene_id "RvY_13711"; transcript_id "RvY_13711.1"; Scaffold009 rebuild exon 867562 867682 . - . gene_id "RvY_13711"; transcript_id "RvY_13711.1"; Scaffold009 rebuild transcript 868577 869923 . - . gene_id "RvY_13712"; transcript_id "RvY_13712.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 868577 869923 . - . gene_id "RvY_13712"; transcript_id "RvY_13712.1"; Scaffold009 rebuild transcript 870691 878999 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; annotation "hypothetical protein."; Pfam "[SAM_2] SAM domain (Sterile alpha motif)|[SAM_1] SAM domain (Sterile alpha motif)"; similar_genes "CSKI1_HUMAN(e-value:1.4e-10;bit-score:64.0)"; Scaffold009 rebuild exon 870691 871296 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 871466 872010 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 872348 872486 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 872580 872684 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 873045 873155 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 873442 873776 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 874279 874869 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild exon 878717 878999 . - . gene_id "RvY_13713"; transcript_id "RvY_13713.1"; Scaffold009 rebuild transcript 881037 885153 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 881037 881425 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild exon 881708 882127 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild exon 882201 882482 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild exon 882765 882822 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild exon 882905 883608 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild exon 883950 884435 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild exon 884865 885153 . - . gene_id "RvY_13714"; transcript_id "RvY_13714.1"; Scaffold009 rebuild transcript 886504 889074 . - . gene_id "RvY_13715"; transcript_id "RvY_13715.1"; gene_name "CA"; annotation "hypothetical protein."; Pfam "[Cadherin]"; CDD "Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here"; Scaffold009 rebuild exon 886504 886648 . - . gene_id "RvY_13715"; transcript_id "RvY_13715.1"; Scaffold009 rebuild exon 886998 888322 . - . gene_id "RvY_13715"; transcript_id "RvY_13715.1"; Scaffold009 rebuild exon 888598 888885 . - . gene_id "RvY_13715"; transcript_id "RvY_13715.1"; Scaffold009 rebuild exon 888976 889074 . - . gene_id "RvY_13715"; transcript_id "RvY_13715.1"; Scaffold009 rebuild transcript 889629 890629 . - . gene_id "RvY_13716"; transcript_id "RvY_13716.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 889629 889759 . - . gene_id "RvY_13716"; transcript_id "RvY_13716.1"; Scaffold009 rebuild exon 890119 890258 . - . gene_id "RvY_13716"; transcript_id "RvY_13716.1"; Scaffold009 rebuild exon 890339 890369 . - . gene_id "RvY_13716"; transcript_id "RvY_13716.1"; Scaffold009 rebuild exon 890482 890629 . - . gene_id "RvY_13716"; transcript_id "RvY_13716.1"; Scaffold009 rebuild transcript 892207 893006 . + . gene_id "RvY_13717"; transcript_id "RvY_13717.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 892207 892441 . + . gene_id "RvY_13717"; transcript_id "RvY_13717.1"; Scaffold009 rebuild exon 892680 892865 . + . gene_id "RvY_13717"; transcript_id "RvY_13717.1"; Scaffold009 rebuild exon 892933 893006 . + . gene_id "RvY_13717"; transcript_id "RvY_13717.1"; Scaffold009 rebuild transcript 893744 895466 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; gene_name "gloB"; annotation "hydroxyacylglutathione hydrolase [EC:3.1.2.6]"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily"; CDD "hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753)."; EC "EC3.1.2.6"; KO "K01069"; similar_genes "GLO2_ALISL(e-value:5.5e-18;bit-score:89.0)"; Scaffold009 rebuild exon 893744 893875 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 893956 894057 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 894119 894198 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 894276 894344 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 894417 894474 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 894534 894651 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 894820 894884 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 895027 895054 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 895120 895155 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 895222 895275 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild exon 895342 895466 . - . gene_id "RvY_13718"; transcript_id "RvY_13718.1"; Scaffold009 rebuild transcript 895905 898410 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; gene_name "SRR"; annotation "serine racemase [EC:5.1.1.18]"; Pfam "[PALP] Pyridoxal-phosphate dependent enzyme"; CDD "Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions."; EC "EC5.1.1.18"; KO "K12235"; similar_genes "SRR_DICDI(e-value:6.0e-11;bit-score:65.0)"; Scaffold009 rebuild exon 895905 895979 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 896736 896811 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 896916 896947 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 897078 897119 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 897178 897218 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 897291 897416 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 897483 897573 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 897798 897866 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 897921 897969 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild exon 898046 898410 . + . gene_id "RvY_13719"; transcript_id "RvY_13719.1"; Scaffold009 rebuild transcript 898717 899489 . - . gene_id "RvY_13720"; transcript_id "RvY_13720.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 898717 898865 . - . gene_id "RvY_13720"; transcript_id "RvY_13720.1"; Scaffold009 rebuild exon 899150 899326 . - . gene_id "RvY_13720"; transcript_id "RvY_13720.1"; Scaffold009 rebuild exon 899399 899489 . - . gene_id "RvY_13720"; transcript_id "RvY_13720.1"; Scaffold009 rebuild transcript 900238 900582 . - . gene_id "RvY_13721"; transcript_id "RvY_13721.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 900238 900582 . - . gene_id "RvY_13721"; transcript_id "RvY_13721.1"; Scaffold009 rebuild transcript 901987 904045 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; annotation "(1)Bardet-Biedl syndrome 5 protein homolog(2)hypothetical protein."; Pfam "(1)[Vps36_ESCRT-II] Vacuolar protein sorting protein 36 Vps36|(1)[GRAM]|[DUF1448]"; similar_genes "(1)BBS5_XENLA(e-value:1.2e-64;bit-score:244.0)(2)BBS5_XENLA(e-value:6.7e-08;bit-score:55.0)"; Scaffold009 rebuild exon 901987 902101 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902155 902212 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902310 902392 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902486 902551 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902609 902658 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902731 902811 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902876 902922 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 902986 903217 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 903499 903696 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 903766 903852 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild exon 903923 904045 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.1"; Scaffold009 rebuild transcript 901987 903056 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; annotation "(1)Bardet-Biedl syndrome 5 protein homolog(2)hypothetical protein."; Pfam "(1)[Vps36_ESCRT-II] Vacuolar protein sorting protein 36 Vps36|(1)[GRAM]|[DUF1448]"; similar_genes "(1)BBS5_XENLA(e-value:1.2e-64;bit-score:244.0)(2)BBS5_XENLA(e-value:6.7e-08;bit-score:55.0)"; Scaffold009 rebuild exon 901987 902101 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild exon 902155 902212 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild exon 902310 902392 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild exon 902473 902551 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild exon 902609 902658 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild exon 902731 902922 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild exon 902986 903056 . + . gene_id "RvY_13722"; transcript_id "RvY_13722.2"; Scaffold009 rebuild transcript 906324 907005 . + . gene_id "RvY_13723"; transcript_id "RvY_13723.1"; gene_name "Eclosion"; annotation "hypothetical protein."; Pfam "[Eclosion] Eclosion hormone"; CDD "Eclosion hormone. Eclosion hormone is an insect neuropeptide that triggers the performance of ecdysis behaviour, which causes shedding of the old cuticle at the end of a molt."; Scaffold009 rebuild exon 906324 906444 . + . gene_id "RvY_13723"; transcript_id "RvY_13723.1"; Scaffold009 rebuild exon 906532 906644 . + . gene_id "RvY_13723"; transcript_id "RvY_13723.1"; Scaffold009 rebuild exon 906958 907005 . + . gene_id "RvY_13723"; transcript_id "RvY_13723.1"; Scaffold009 rebuild transcript 907662 911115 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; annotation "hypothetical protein."; Pfam "[HRM] Hormone receptor domain|[Sushi] Sushi domain (SCR repeat)"; Scaffold009 rebuild exon 907662 907734 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 907812 908029 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 908223 908294 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 908352 908790 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 909329 909368 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 909450 909522 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 909620 909722 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 909840 910124 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 910380 910426 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 910506 910668 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 910737 910882 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild exon 911011 911115 . + . gene_id "RvY_13724"; transcript_id "RvY_13724.1"; Scaffold009 rebuild transcript 911582 912664 . - . gene_id "RvY_13725"; transcript_id "RvY_13725.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 911582 911730 . - . gene_id "RvY_13725"; transcript_id "RvY_13725.1"; Scaffold009 rebuild exon 911830 911957 . - . gene_id "RvY_13725"; transcript_id "RvY_13725.1"; Scaffold009 rebuild exon 912050 912092 . - . gene_id "RvY_13725"; transcript_id "RvY_13725.1"; Scaffold009 rebuild exon 912325 912664 . - . gene_id "RvY_13725"; transcript_id "RvY_13725.1"; Scaffold009 rebuild transcript 917008 917295 . - . gene_id "RvY_13726"; transcript_id "RvY_13726.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 917008 917295 . - . gene_id "RvY_13726"; transcript_id "RvY_13726.1"; Scaffold009 rebuild transcript 917642 918144 . - . gene_id "RvY_13727"; transcript_id "RvY_13727.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 917642 918006 . - . gene_id "RvY_13727"; transcript_id "RvY_13727.1"; Scaffold009 rebuild exon 918081 918144 . - . gene_id "RvY_13727"; transcript_id "RvY_13727.1"; Scaffold009 rebuild transcript 919007 919615 . + . gene_id "RvY_13728"; transcript_id "RvY_13728.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 919007 919087 . + . gene_id "RvY_13728"; transcript_id "RvY_13728.1"; Scaffold009 rebuild exon 919499 919615 . + . gene_id "RvY_13728"; transcript_id "RvY_13728.1"; Scaffold009 rebuild transcript 920038 920440 . + . gene_id "RvY_13729"; transcript_id "RvY_13729.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 920038 920085 . + . gene_id "RvY_13729"; transcript_id "RvY_13729.1"; Scaffold009 rebuild exon 920291 920440 . + . gene_id "RvY_13729"; transcript_id "RvY_13729.1"; Scaffold009 rebuild transcript 924417 925619 . + . gene_id "RvY_13730"; transcript_id "RvY_13730.1"; gene_name "RCOR1"; annotation "REST corepressor 1"; Pfam "[ELM2]"; KO "K11829"; Scaffold009 rebuild exon 924417 925619 . + . gene_id "RvY_13730"; transcript_id "RvY_13730.1"; Scaffold009 rebuild transcript 926031 927736 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 926031 926314 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.1"; Scaffold009 rebuild exon 926561 926950 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.1"; Scaffold009 rebuild exon 927250 927736 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.1"; Scaffold009 rebuild transcript 926031 927736 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 926031 926314 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.2"; Scaffold009 rebuild exon 926561 926950 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.2"; Scaffold009 rebuild exon 927250 927306 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.2"; Scaffold009 rebuild exon 927418 927736 . - . gene_id "RvY_13731"; transcript_id "RvY_13731.2"; Scaffold009 rebuild transcript 928427 928696 . - . gene_id "RvY_13732"; transcript_id "RvY_13732.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 928427 928696 . - . gene_id "RvY_13732"; transcript_id "RvY_13732.1"; Scaffold009 rebuild transcript 928698 931110 . - . gene_id "RvY_13733"; transcript_id "RvY_13733.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 928698 928906 . - . gene_id "RvY_13733"; transcript_id "RvY_13733.1"; Scaffold009 rebuild exon 928966 930345 . - . gene_id "RvY_13733"; transcript_id "RvY_13733.1"; Scaffold009 rebuild exon 931068 931110 . - . gene_id "RvY_13733"; transcript_id "RvY_13733.1"; Scaffold009 rebuild transcript 932289 934565 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; gene_name "truD"; annotation "tRNA pseudouridine synthase D [EC:5.4.99.12]"; Pfam "[TruD] tRNA pseudouridine synthase D (TruD)"; CDD "PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35."; EC "EC5.4.99.-|EC5.4.99.12"; KO "K06176"; similar_genes "PUS7_BOVIN(e-value:1.3e-06;bit-score:51.0)"; Scaffold009 rebuild exon 932289 932473 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; Scaffold009 rebuild exon 932687 932841 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; Scaffold009 rebuild exon 932921 932987 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; Scaffold009 rebuild exon 933056 933288 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; Scaffold009 rebuild exon 933560 934178 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; Scaffold009 rebuild exon 934316 934565 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.1"; Scaffold009 rebuild transcript 931553 934565 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; gene_name "truD"; annotation "tRNA pseudouridine synthase D [EC:5.4.99.12]"; Pfam "[TruD] tRNA pseudouridine synthase D (TruD)"; CDD "PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35."; EC "EC5.4.99.-|EC5.4.99.12"; KO "K06176"; similar_genes "PUS7_BOVIN(e-value:1.3e-06;bit-score:51.0)"; Scaffold009 rebuild exon 931553 931579 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild exon 932328 932473 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild exon 932687 932841 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild exon 932921 932987 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild exon 933056 933288 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild exon 933560 934178 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild exon 934316 934565 . - . gene_id "RvY_13734"; transcript_id "RvY_13734.2"; Scaffold009 rebuild transcript 934570 934963 . - . gene_id "RvY_13735"; transcript_id "RvY_13735.1"; gene_name "PseudoU_synth_ScPUS7"; annotation "hypothetical protein."; CDD "PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35."; Scaffold009 rebuild exon 934570 934819 . - . gene_id "RvY_13735"; transcript_id "RvY_13735.1"; Scaffold009 rebuild exon 934881 934963 . - . gene_id "RvY_13735"; transcript_id "RvY_13735.1"; Scaffold009 rebuild transcript 935888 937899 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; gene_name "UAA"; annotation "putative Adenosine 3'-phospho 5'-phosphosulfate transporter 2"; Pfam "[UAA] UAA transporter family"; CDD "UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine."; KO "K15277"; similar_genes "S35B3_PONAB(e-value:1.3e-38;bit-score:157.0)"; Scaffold009 rebuild exon 935888 936132 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 936326 936434 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 936511 936701 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 936774 936881 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 936979 937090 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 937165 937207 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 937287 937411 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild exon 937588 937899 . - . gene_id "RvY_13736"; transcript_id "RvY_13736.1"; Scaffold009 rebuild transcript 938440 940388 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; gene_name "PDSS1"; annotation "putative Decaprenyl-diphosphate synthase subunit 1"; Pfam "[polyprenyl_synt] Polyprenyl synthetase"; CDD "solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase."; EC "EC2.5.1.-"; KO "K12504"; similar_genes "DPS1_HUMAN(e-value:4.5e-26;bit-score:116.0)"; Scaffold009 rebuild exon 938440 938733 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild exon 938812 938942 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild exon 939021 939165 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild exon 939250 939474 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild exon 939675 939869 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild exon 939943 940023 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild exon 940248 940388 . + . gene_id "RvY_13737"; transcript_id "RvY_13737.1"; Scaffold009 rebuild transcript 940991 944825 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 940991 941257 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 941319 941510 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 941710 941836 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 941927 942058 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 942132 942218 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 942285 942469 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 942690 942955 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 943054 943216 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 943282 943322 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 943503 943892 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 944081 944181 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 944259 944314 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 944375 944720 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild exon 944782 944825 . - . gene_id "RvY_13738"; transcript_id "RvY_13738.1"; Scaffold009 rebuild transcript 945229 946401 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 945229 945362 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.3"; Scaffold009 rebuild exon 945498 945749 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.3"; Scaffold009 rebuild exon 946046 946271 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.3"; Scaffold009 rebuild exon 946363 946401 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.3"; Scaffold009 rebuild transcript 945229 946277 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.4"; annotation "hypothetical protein."; Scaffold009 rebuild exon 945229 945362 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.4"; Scaffold009 rebuild exon 945498 945749 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.4"; Scaffold009 rebuild exon 946046 946277 . + . gene_id "RvY_13739"; transcript_id "RvY_13739.4"; Scaffold009 rebuild transcript 947450 948085 . - . gene_id "RvY_13740"; transcript_id "RvY_13740.4"; annotation "hypothetical protein."; Pfam "[Med20] TATA-binding related factor (TRF) of subunit 20 of Mediator complex"; KO "(4)K13528"; Scaffold009 rebuild exon 947450 948085 . - . gene_id "RvY_13740"; transcript_id "RvY_13740.4"; Scaffold009 rebuild transcript 948983 950566 . + . gene_id "RvY_13741"; transcript_id "RvY_13741.1"; annotation "hypothetical protein."; Pfam "[DUF1762]"; Scaffold009 rebuild exon 948983 949174 . + . gene_id "RvY_13741"; transcript_id "RvY_13741.1"; Scaffold009 rebuild exon 949255 949650 . + . gene_id "RvY_13741"; transcript_id "RvY_13741.1"; Scaffold009 rebuild exon 949719 949846 . + . gene_id "RvY_13741"; transcript_id "RvY_13741.1"; Scaffold009 rebuild exon 949911 950113 . + . gene_id "RvY_13741"; transcript_id "RvY_13741.1"; Scaffold009 rebuild exon 950373 950566 . + . gene_id "RvY_13741"; transcript_id "RvY_13741.1"; Scaffold009 rebuild transcript 954153 955818 . + . gene_id "RvY_13742"; transcript_id "RvY_13742.1"; gene_name "K07001"; annotation "Unclassified; Poorly Characterized; General function prediction only"; Pfam "[Patatin] Patatin-like phospholipase"; CDD "Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes PNPLA6 and PNPLA7 from Homo sapiens, YMF9 from Yeast, and Swiss Cheese protein (sws) from Drosophila melanogaster."; EC "EC3.1.1.5"; KO "K07001"; similar_genes "SWS_DROMO(e-value:4.3e-20;bit-score:96.0)"; Scaffold009 rebuild exon 954153 954624 . + . gene_id "RvY_13742"; transcript_id "RvY_13742.1"; Scaffold009 rebuild exon 954880 955368 . + . gene_id "RvY_13742"; transcript_id "RvY_13742.1"; Scaffold009 rebuild exon 955612 955668 . + . gene_id "RvY_13742"; transcript_id "RvY_13742.1"; Scaffold009 rebuild exon 955751 955818 . + . gene_id "RvY_13742"; transcript_id "RvY_13742.1"; Scaffold009 rebuild transcript 955887 956989 . + . gene_id "RvY_13743"; transcript_id "RvY_13743.1"; gene_name "Pat_PNPLA6_PNPLA7"; annotation "hypothetical protein."; CDD "Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes PNPLA6 and PNPLA7 from Homo sapiens, YMF9 from Yeast, and Swiss Cheese protein (sws) from Drosophila melanogaster."; Scaffold009 rebuild exon 955887 956338 . + . gene_id "RvY_13743"; transcript_id "RvY_13743.1"; Scaffold009 rebuild exon 956707 956989 . + . gene_id "RvY_13743"; transcript_id "RvY_13743.1"; Scaffold009 rebuild transcript 958257 959411 . + . gene_id "RvY_13744"; transcript_id "RvY_13744.1"; gene_name "RASL10B"; annotation "Ras-like, family 10, member B"; Pfam "[Miro] Miro-like protein|[Ras] Ras family"; CDD "RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; KO "K07851"; Scaffold009 rebuild exon 958257 958350 . + . gene_id "RvY_13744"; transcript_id "RvY_13744.1"; Scaffold009 rebuild exon 958774 959411 . + . gene_id "RvY_13744"; transcript_id "RvY_13744.1"; Scaffold009 rebuild transcript 961020 962149 . - . gene_id "RvY_13745"; transcript_id "RvY_13745.1"; gene_name "RheB"; annotation "hypothetical protein."; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family"; CDD "Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a"; Scaffold009 rebuild exon 961020 961441 . - . gene_id "RvY_13745"; transcript_id "RvY_13745.1"; Scaffold009 rebuild exon 961846 962149 . - . gene_id "RvY_13745"; transcript_id "RvY_13745.1"; Scaffold009 rebuild transcript 964081 965257 . + . gene_id "RvY_13746"; transcript_id "RvY_13746.1"; annotation "hypothetical protein."; Pfam "[Bromo_TP] Bromodomain associated|[TAF8_C] Transcription factor TFIID complex subunit 8 C-term"; KO "K14649"; Scaffold009 rebuild exon 964081 964461 . + . gene_id "RvY_13746"; transcript_id "RvY_13746.1"; Scaffold009 rebuild exon 964658 965257 . + . gene_id "RvY_13746"; transcript_id "RvY_13746.1"; Scaffold009 rebuild transcript 965539 966264 . - . gene_id "RvY_13747"; transcript_id "RvY_13747.1"; annotation "hypothetical protein."; Pfam "[DUF1301]"; Scaffold009 rebuild exon 965539 966264 . - . gene_id "RvY_13747"; transcript_id "RvY_13747.1"; Scaffold009 rebuild transcript 966986 968471 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; annotation "hypothetical protein."; Pfam "[PCI_Csn8] COP9 signalosome, subunit CSN8|[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; KO "K15028"; similar_genes "EIF3K_XENTR(e-value:5.9e-09;bit-score:59.0)"; Scaffold009 rebuild exon 966986 967065 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild exon 967148 967246 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild exon 967614 967743 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild exon 967829 967903 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild exon 967997 968063 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild exon 968132 968209 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild exon 968308 968471 . + . gene_id "RvY_13748"; transcript_id "RvY_13748.1"; Scaffold009 rebuild transcript 968752 974372 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; gene_name "REV1"; annotation "DNA repair protein REV1 [EC:2.7.7.-]"; Pfam "[BRCT] BRCA1 C Terminus (BRCT) domain|[IMS] impB/mucB/samB family|[IMS_C] impB/mucB/samB family C-terminal"; CDD "Pol_zeta, a member of the Y-family of DNA polymerases. Y-family polymerases can transverse normal replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at higher error rate. The Y-family has no 3'->5' exonuclease activity. Pol zeta has also been named Rev1; this subfamily is mainly present in eukaryotes."; EC "EC2.7.7.-"; KO "K03515"; similar_genes "REV1_PONAB(e-value:5.0e-23;bit-score:106.0)"; Scaffold009 rebuild exon 968752 969359 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; Scaffold009 rebuild exon 969619 970615 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; Scaffold009 rebuild exon 970926 970988 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; Scaffold009 rebuild exon 971052 971659 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; Scaffold009 rebuild exon 972821 973192 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; Scaffold009 rebuild exon 973418 974372 . - . gene_id "RvY_13749"; transcript_id "RvY_13749.1"; Scaffold009 rebuild transcript 974560 975000 . - . gene_id "RvY_13750"; transcript_id "RvY_13750.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 974560 975000 . - . gene_id "RvY_13750"; transcript_id "RvY_13750.1"; Scaffold009 rebuild transcript 975270 978624 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; annotation "hypothetical protein."; Pfam "[TACC] Transforming acidic coiled-coil-containing protein (TACC)"; KO "K14283"; Scaffold009 rebuild exon 975270 975312 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 975452 976129 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 976390 976625 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 977108 977278 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 977560 977907 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 977967 978167 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 978363 978436 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild exon 978498 978624 . + . gene_id "RvY_13751"; transcript_id "RvY_13751.1"; Scaffold009 rebuild transcript 979252 980649 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; annotation "hypothetical protein."; Pfam "[Far-17a_AIG1] FAR-17a/AIG1-like protein"; Scaffold009 rebuild exon 979252 979331 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 979453 979607 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 979698 979816 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 979885 979938 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 980021 980068 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 980141 980278 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 980353 980392 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 980466 980493 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild exon 980568 980649 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.1"; Scaffold009 rebuild transcript 979145 979748 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.2"; annotation "hypothetical protein."; Pfam "[Far-17a_AIG1] FAR-17a/AIG1-like protein"; Scaffold009 rebuild exon 979145 979331 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.2"; Scaffold009 rebuild exon 979453 979607 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.2"; Scaffold009 rebuild exon 979698 979748 . - . gene_id "RvY_13752"; transcript_id "RvY_13752.2"; Scaffold009 rebuild transcript 982614 982868 . - . gene_id "RvY_13753"; transcript_id "RvY_13753.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 982614 982868 . - . gene_id "RvY_13753"; transcript_id "RvY_13753.1"; Scaffold009 rebuild transcript 984276 985013 . + . gene_id "RvY_13754"; transcript_id "RvY_13754.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 984276 984311 . + . gene_id "RvY_13754"; transcript_id "RvY_13754.1"; Scaffold009 rebuild exon 984481 984573 . + . gene_id "RvY_13754"; transcript_id "RvY_13754.1"; Scaffold009 rebuild exon 984939 985013 . + . gene_id "RvY_13754"; transcript_id "RvY_13754.1"; Scaffold009 rebuild transcript 990646 990891 . + . gene_id "RvY_13755"; transcript_id "RvY_13755.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 990646 990891 . + . gene_id "RvY_13755"; transcript_id "RvY_13755.1"; Scaffold009 rebuild transcript 989869 990919 . + . gene_id "RvY_13755"; transcript_id "RvY_13755.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 989869 989908 . + . gene_id "RvY_13755"; transcript_id "RvY_13755.2"; Scaffold009 rebuild exon 990780 990919 . + . gene_id "RvY_13755"; transcript_id "RvY_13755.2"; Scaffold009 rebuild transcript 995137 1000839 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 995137 995718 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 996213 996572 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 996829 997240 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 997544 997986 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 998276 998614 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 998876 999371 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 999659 1000201 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild exon 1000559 1000839 . + . gene_id "RvY_13756"; transcript_id "RvY_13756.1"; Scaffold009 rebuild transcript 1002353 1002556 . + . gene_id "RvY_13757"; transcript_id "RvY_13757.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1002353 1002556 . + . gene_id "RvY_13757"; transcript_id "RvY_13757.1"; Scaffold009 rebuild transcript 1002899 1003222 . + . gene_id "RvY_13758"; transcript_id "RvY_13758.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1002899 1003222 . + . gene_id "RvY_13758"; transcript_id "RvY_13758.1"; Scaffold009 rebuild transcript 1013093 1015290 . + . gene_id "RvY_13759"; transcript_id "RvY_13759.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1013093 1014009 . + . gene_id "RvY_13759"; transcript_id "RvY_13759.1"; Scaffold009 rebuild exon 1014477 1015290 . + . gene_id "RvY_13759"; transcript_id "RvY_13759.1"; Scaffold009 rebuild transcript 1016938 1019068 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; annotation "hypothetical protein."; Pfam "[CENP-B_N] CENP-B N-terminal DNA-binding domain"; Scaffold009 rebuild exon 1016938 1017153 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; Scaffold009 rebuild exon 1017494 1017952 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; Scaffold009 rebuild exon 1018029 1018050 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; Scaffold009 rebuild exon 1018344 1018434 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; Scaffold009 rebuild exon 1018520 1018625 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; Scaffold009 rebuild exon 1018811 1019068 . - . gene_id "RvY_13760"; transcript_id "RvY_13760.1"; Scaffold009 rebuild transcript 1019569 1022674 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; gene_name "BDF1"; annotation "putative Bromodomain-containing protein 3"; Pfam "[Bromodomain]"; CDD "Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; KO "K11684"; similar_genes "BRD3_MOUSE(e-value:1.0e-25;bit-score:115.0)"; Scaffold009 rebuild exon 1019569 1019941 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; Scaffold009 rebuild exon 1020220 1020435 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; Scaffold009 rebuild exon 1020498 1020826 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; Scaffold009 rebuild exon 1020980 1021192 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; Scaffold009 rebuild exon 1021256 1021791 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; Scaffold009 rebuild exon 1022071 1022674 . - . gene_id "RvY_13761"; transcript_id "RvY_13761.1"; Scaffold009 rebuild transcript 1023439 1023781 . + . gene_id "RvY_13762"; transcript_id "RvY_13762.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1023439 1023551 . + . gene_id "RvY_13762"; transcript_id "RvY_13762.1"; Scaffold009 rebuild exon 1023646 1023781 . + . gene_id "RvY_13762"; transcript_id "RvY_13762.1"; Scaffold009 rebuild transcript 1023989 1025521 . + . gene_id "RvY_13763"; transcript_id "RvY_13763.1"; annotation "hypothetical protein."; Pfam "[Radial_spoke_3] Radial spoke protein 3"; Scaffold009 rebuild exon 1023989 1024342 . + . gene_id "RvY_13763"; transcript_id "RvY_13763.1"; Scaffold009 rebuild exon 1024410 1024547 . + . gene_id "RvY_13763"; transcript_id "RvY_13763.1"; Scaffold009 rebuild exon 1024732 1024894 . + . gene_id "RvY_13763"; transcript_id "RvY_13763.1"; Scaffold009 rebuild exon 1024980 1025521 . + . gene_id "RvY_13763"; transcript_id "RvY_13763.1"; Scaffold009 rebuild transcript 1025874 1027595 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; annotation "hypothetical protein."; Pfam "[zf-U11-48K] U11-48K-like CHHC zinc finger"; Scaffold009 rebuild exon 1025874 1026085 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; Scaffold009 rebuild exon 1026303 1026454 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; Scaffold009 rebuild exon 1026528 1026647 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; Scaffold009 rebuild exon 1026706 1026781 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; Scaffold009 rebuild exon 1026999 1027170 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; Scaffold009 rebuild exon 1027425 1027595 . - . gene_id "RvY_13764"; transcript_id "RvY_13764.1"; Scaffold009 rebuild transcript 1027597 1028721 . + . gene_id "RvY_13765"; transcript_id "RvY_13765.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1027597 1027683 . + . gene_id "RvY_13765"; transcript_id "RvY_13765.1"; Scaffold009 rebuild exon 1028494 1028721 . + . gene_id "RvY_13765"; transcript_id "RvY_13765.1"; Scaffold009 rebuild transcript 1029020 1032593 . + . gene_id "RvY_13766"; transcript_id "RvY_13766.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1029020 1029350 . + . gene_id "RvY_13766"; transcript_id "RvY_13766.1"; Scaffold009 rebuild exon 1032568 1032593 . + . gene_id "RvY_13766"; transcript_id "RvY_13766.1"; Scaffold009 rebuild transcript 1029985 1031928 . - . gene_id "RvY_13767"; transcript_id "RvY_13767.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1029985 1030194 . - . gene_id "RvY_13767"; transcript_id "RvY_13767.1"; Scaffold009 rebuild exon 1031701 1031928 . - . gene_id "RvY_13767"; transcript_id "RvY_13767.1"; Scaffold009 rebuild transcript 1039804 1043532 . + . gene_id "RvY_13768"; transcript_id "RvY_13768.1"; gene_name "ZIC5"; annotation "Zinc finger protein ZIC 5"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09226"; similar_genes "ZIC5_HUMAN(e-value:9.7e-73;bit-score:271.0)"; Scaffold009 rebuild exon 1039804 1040057 . + . gene_id "RvY_13768"; transcript_id "RvY_13768.1"; Scaffold009 rebuild exon 1040367 1040785 . + . gene_id "RvY_13768"; transcript_id "RvY_13768.1"; Scaffold009 rebuild exon 1042988 1043532 . + . gene_id "RvY_13768"; transcript_id "RvY_13768.1"; Scaffold009 rebuild transcript 1049124 1052100 . - . gene_id "RvY_13769"; transcript_id "RvY_13769.1"; gene_name "HRH2"; annotation "histamine receptor H2"; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; KO "K04150"; similar_genes "OCTB2_DROME(e-value:1.8e-12;bit-score:70.0)"; Scaffold009 rebuild exon 1049124 1049254 . - . gene_id "RvY_13769"; transcript_id "RvY_13769.1"; Scaffold009 rebuild exon 1049481 1049677 . - . gene_id "RvY_13769"; transcript_id "RvY_13769.1"; Scaffold009 rebuild exon 1050037 1050434 . - . gene_id "RvY_13769"; transcript_id "RvY_13769.1"; Scaffold009 rebuild exon 1051272 1051416 . - . gene_id "RvY_13769"; transcript_id "RvY_13769.1"; Scaffold009 rebuild exon 1051808 1052100 . - . gene_id "RvY_13769"; transcript_id "RvY_13769.1"; Scaffold009 rebuild transcript 1053665 1061628 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; gene_name "CACNA1S"; annotation "Voltage-dependent L-type calcium channel subunit alpha-1C"; Pfam "[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; KO "K04857"; similar_genes "CAC1C_RABIT(e-value:5.4e-67;bit-score:252.0)"; Scaffold009 rebuild exon 1053665 1053957 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1054023 1054227 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1054668 1055147 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1055470 1055658 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1055725 1055811 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1055888 1055998 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1056306 1056464 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1056530 1056875 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1056998 1057059 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1057130 1057228 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1057303 1057390 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1057459 1057625 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1057825 1058357 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1058649 1058769 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1058879 1059315 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1059715 1060076 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1060168 1060271 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1060352 1060390 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1060634 1060782 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1060850 1061267 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1061328 1061433 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild exon 1061525 1061628 . - . gene_id "RvY_13770"; transcript_id "RvY_13770.1"; Scaffold009 rebuild transcript 1063065 1068082 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; annotation "hypothetical protein."; Pfam "[NHL] NHL repeat"; similar_genes "NCL1_CAEEL(e-value:1.0e-08;bit-score:58.0)"; Scaffold009 rebuild exon 1063065 1063208 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1063306 1063413 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1063557 1063748 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1064087 1064425 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1064494 1064648 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1064935 1065098 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1065227 1065400 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1065643 1065742 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1065827 1065933 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1066287 1066555 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1067222 1067572 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild exon 1067918 1068082 . + . gene_id "RvY_13771"; transcript_id "RvY_13771.1"; Scaffold009 rebuild transcript 1068702 1068896 . - . gene_id "RvY_13772"; transcript_id "RvY_13772.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1068702 1068896 . - . gene_id "RvY_13772"; transcript_id "RvY_13772.1"; Scaffold009 rebuild transcript 1069209 1072795 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; gene_name "M2_ACE"; annotation "Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold009 rebuild exon 1069209 1069245 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1069313 1069548 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1070000 1070309 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1070399 1070542 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1070605 1070817 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1071119 1071389 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1071449 1071499 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1071610 1071851 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1071941 1072085 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1072282 1072405 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1072460 1072557 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild exon 1072624 1072795 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.1"; Scaffold009 rebuild transcript 1069209 1072795 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; gene_name "M2_ACE"; annotation "Angiotensin-converting enzyme"; Pfam "[Peptidase_M2] Angiotensin-converting enzyme"; CDD "Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem Scaffold009 rebuild exon 1069209 1069245 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1069313 1069548 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1070000 1070309 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1070399 1070542 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1070605 1070817 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1071119 1071389 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1071449 1071499 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1071610 1071698 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1071768 1071851 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1071941 1072085 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1072282 1072405 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1072460 1072557 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild exon 1072624 1072795 . + . gene_id "RvY_13773"; transcript_id "RvY_13773.2"; Scaffold009 rebuild transcript 1073266 1078401 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; annotation "hypothetical protein."; Pfam "[TRAPPC9-Trs120] Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit"; Scaffold009 rebuild exon 1073266 1073468 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1073668 1074132 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1074386 1074792 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1075147 1075654 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1075880 1076135 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1076202 1076527 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1076802 1077149 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild exon 1077432 1078401 . - . gene_id "RvY_13774"; transcript_id "RvY_13774.1"; Scaffold009 rebuild transcript 1079152 1083516 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; annotation "putative Trimethylguanosine synthase"; Pfam "[Met_10] Met-10+ like-protein|[Methyltransf_26] Methyltransferase domain|[Methyltransf_15] RNA cap guanine-N2 methyltransferase|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[UPF0020] Putative RNA methylase family UPF0020"; EC "EC2.1.1.-"; KO "K14292"; similar_genes "TGS1_RAT(e-value:3.1e-29;bit-score:126.0)"; Scaffold009 rebuild exon 1079152 1079372 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1079451 1079775 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1079892 1080198 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1080448 1080854 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1081103 1081204 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1081530 1081747 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1081995 1082341 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1082829 1082960 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1083037 1083329 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild exon 1083397 1083516 . + . gene_id "RvY_13775"; transcript_id "RvY_13775.1"; Scaffold009 rebuild transcript 1083577 1085582 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; annotation "hypothetical protein."; Pfam "[GAS] Growth-arrest specific micro-tubule binding"; Scaffold009 rebuild exon 1083577 1083729 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; Scaffold009 rebuild exon 1083795 1084070 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; Scaffold009 rebuild exon 1084280 1084795 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; Scaffold009 rebuild exon 1084857 1085063 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; Scaffold009 rebuild exon 1085132 1085329 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; Scaffold009 rebuild exon 1085511 1085582 . - . gene_id "RvY_13776"; transcript_id "RvY_13776.1"; Scaffold009 rebuild transcript 1086019 1086414 . + . gene_id "RvY_13777"; transcript_id "RvY_13777.1"; annotation "hypothetical protein."; Pfam "[DUF3253]"; Scaffold009 rebuild exon 1086019 1086414 . + . gene_id "RvY_13777"; transcript_id "RvY_13777.1"; Scaffold009 rebuild transcript 1086073 1086414 . + . gene_id "RvY_13777"; transcript_id "RvY_13777.2"; annotation "hypothetical protein."; Pfam "[DUF3253]"; Scaffold009 rebuild exon 1086073 1086414 . + . gene_id "RvY_13777"; transcript_id "RvY_13777.2"; Scaffold009 rebuild transcript 1086455 1087428 . - . gene_id "RvY_13778"; transcript_id "RvY_13778.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1086455 1086858 . - . gene_id "RvY_13778"; transcript_id "RvY_13778.1"; Scaffold009 rebuild exon 1087335 1087428 . - . gene_id "RvY_13778"; transcript_id "RvY_13778.1"; Scaffold009 rebuild transcript 1086768 1087205 . + . gene_id "RvY_13779"; transcript_id "RvY_13779.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1086768 1087205 . + . gene_id "RvY_13779"; transcript_id "RvY_13779.1"; Scaffold009 rebuild transcript 1087796 1089432 . + . gene_id "RvY_13780"; transcript_id "RvY_13780.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1087796 1087864 . + . gene_id "RvY_13780"; transcript_id "RvY_13780.1"; Scaffold009 rebuild exon 1088885 1089119 . + . gene_id "RvY_13780"; transcript_id "RvY_13780.1"; Scaffold009 rebuild exon 1089413 1089432 . + . gene_id "RvY_13780"; transcript_id "RvY_13780.1"; Scaffold009 rebuild transcript 1089489 1089998 . + . gene_id "RvY_13781"; transcript_id "RvY_13781.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1089489 1089998 . + . gene_id "RvY_13781"; transcript_id "RvY_13781.1"; Scaffold009 rebuild transcript 1091103 1094044 . - . gene_id "RvY_13782"; transcript_id "RvY_13782.1"; gene_name "2A0120"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Nuc_H_symport] Nucleoside H+ symporter|[LacY_symp] LacY proton/sugar symporter|[MFS_1_like] MFS_1 like family"; CDD "sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria."; Scaffold009 rebuild exon 1091103 1091278 . - . gene_id "RvY_13782"; transcript_id "RvY_13782.1"; Scaffold009 rebuild exon 1091553 1091944 . - . gene_id "RvY_13782"; transcript_id "RvY_13782.1"; Scaffold009 rebuild exon 1092852 1093734 . - . gene_id "RvY_13782"; transcript_id "RvY_13782.1"; Scaffold009 rebuild exon 1093957 1094044 . - . gene_id "RvY_13782"; transcript_id "RvY_13782.1"; Scaffold009 rebuild transcript 1094770 1100516 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; gene_name "COPA"; annotation "Coatomer subunit alpha"; Pfam "[COPI_C] Coatomer (COPI) alpha subunit C-terminus|[WD40] WD domain, G-beta repeat|[Coatomer_WDAD] Coatomer WD associated region"; KO "K05236"; similar_genes "COPA_HUMAN(e-value:7.6e-111;bit-score:397.0)"; Scaffold009 rebuild exon 1094770 1095183 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1095625 1096250 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1096648 1097197 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1097524 1097745 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1097831 1097993 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1098062 1098200 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1098282 1098367 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1098564 1098706 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1098776 1099371 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1099596 1099975 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild exon 1100188 1100516 . - . gene_id "RvY_13783"; transcript_id "RvY_13783.1"; Scaffold009 rebuild transcript 1101295 1102251 . + . gene_id "RvY_13784"; transcript_id "RvY_13784.1"; annotation "putative OTU domain-containing protein 6B"; Pfam "[Peptidase_C65] Peptidase C65 Otubain|[OTU] OTU-like cysteine protease"; similar_genes "OTU6B_XENLA(e-value:4.0e-27;bit-score:119.0)"; Scaffold009 rebuild exon 1101295 1102251 . + . gene_id "RvY_13784"; transcript_id "RvY_13784.1"; Scaffold009 rebuild transcript 1103132 1104602 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; annotation "putative Transmembrane protein 111"; Pfam "[DUF106] Integral membrane protein DUF106"; similar_genes "TM111_DANRE(e-value:4.4e-39;bit-score:159.0)"; Scaffold009 rebuild exon 1103132 1103280 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild exon 1103373 1103530 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild exon 1103762 1103866 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild exon 1103946 1104027 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild exon 1104137 1104216 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild exon 1104298 1104374 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild exon 1104492 1104602 . + . gene_id "RvY_13785"; transcript_id "RvY_13785.1"; Scaffold009 rebuild transcript 1106741 1107515 . - . gene_id "RvY_13786"; transcript_id "RvY_13786.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1106741 1106979 . - . gene_id "RvY_13786"; transcript_id "RvY_13786.1"; Scaffold009 rebuild exon 1107042 1107164 . - . gene_id "RvY_13786"; transcript_id "RvY_13786.1"; Scaffold009 rebuild exon 1107440 1107515 . - . gene_id "RvY_13786"; transcript_id "RvY_13786.1"; Scaffold009 rebuild transcript 1109095 1109412 . + . gene_id "RvY_13787"; transcript_id "RvY_13787.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1109095 1109412 . + . gene_id "RvY_13787"; transcript_id "RvY_13787.1"; Scaffold009 rebuild transcript 1109505 1111396 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; gene_name "PDZ"; annotation "hypothetical protein."; Pfam "(1)[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; Scaffold009 rebuild exon 1109505 1109535 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1109611 1109723 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1109990 1110073 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1110266 1110395 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1110550 1110628 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1110733 1110760 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1110851 1110967 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1111026 1111192 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild exon 1111252 1111396 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.1"; Scaffold009 rebuild transcript 1109505 1110851 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; gene_name "PDZ"; annotation "hypothetical protein."; Pfam "(1)[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; Scaffold009 rebuild exon 1109505 1109535 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; Scaffold009 rebuild exon 1109611 1109723 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; Scaffold009 rebuild exon 1109990 1110073 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; Scaffold009 rebuild exon 1110266 1110395 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; Scaffold009 rebuild exon 1110550 1110760 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; Scaffold009 rebuild exon 1110851 1110851 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.2"; Scaffold009 rebuild transcript 1109505 1110769 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; gene_name "PDZ"; annotation "hypothetical protein."; Pfam "(1)[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities."; Scaffold009 rebuild exon 1109505 1109535 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; Scaffold009 rebuild exon 1109611 1109723 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; Scaffold009 rebuild exon 1109990 1110073 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; Scaffold009 rebuild exon 1110266 1110395 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; Scaffold009 rebuild exon 1110550 1110628 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; Scaffold009 rebuild exon 1110733 1110769 . + . gene_id "RvY_13788"; transcript_id "RvY_13788.3"; Scaffold009 rebuild transcript 1112141 1115113 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; gene_name "GlpA"; annotation "(1)putative Glycerol-3-phosphate dehydrogenase, mitochondrial(2)Glycerol-3-phosphate dehydrogenase, mitochondrial"; Pfam "(2)[FAD_binding_2] FAD binding domain|(2)[FAD_oxidored] FAD dependent oxidoreductase|[DAO] FAD dependent oxidoreductase"; CDD "Glycerol-3-phosphate dehydrogenase [Energy production and conversion]"; EC "EC1.1.5.3"; similar_genes "(1)GPDM_MOUSE(e-value:1.7e-38;bit-score:157.0)(2)GPDM_MOUSE(e-value:2.8e-70;bit-score:263.0)"; Scaffold009 rebuild exon 1112141 1112143 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild exon 1112222 1112339 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild exon 1112547 1113064 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild exon 1113249 1113475 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild exon 1113691 1113854 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild exon 1113945 1114009 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild exon 1114289 1115113 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.1"; Scaffold009 rebuild transcript 1111591 1113360 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.2"; gene_name "GlpA"; annotation "(1)putative Glycerol-3-phosphate dehydrogenase, mitochondrial(2)Glycerol-3-phosphate dehydrogenase, mitochondrial"; Pfam "(2)[FAD_binding_2] FAD binding domain|(2)[FAD_oxidored] FAD dependent oxidoreductase|[DAO] FAD dependent oxidoreductase"; CDD "Glycerol-3-phosphate dehydrogenase [Energy production and conversion]"; EC "EC1.1.5.3"; similar_genes "(1)GPDM_MOUSE(e-value:1.7e-38;bit-score:157.0)(2)GPDM_MOUSE(e-value:2.8e-70;bit-score:263.0)"; Scaffold009 rebuild exon 1111591 1111834 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.2"; Scaffold009 rebuild exon 1111983 1112143 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.2"; Scaffold009 rebuild exon 1112222 1112339 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.2"; Scaffold009 rebuild exon 1112547 1113064 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.2"; Scaffold009 rebuild exon 1113271 1113360 . + . gene_id "RvY_13789"; transcript_id "RvY_13789.2"; Scaffold009 rebuild transcript 1115566 1117093 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.1"; annotation "hypothetical protein."; Pfam "(1)[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|(2,3)[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "(2,3)ACHA2_MOUSE(e-value:4.2e-16;bit-score:83.0)"; Scaffold009 rebuild exon 1115566 1116114 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.1"; Scaffold009 rebuild exon 1116535 1116664 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.1"; Scaffold009 rebuild exon 1116749 1116980 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.1"; Scaffold009 rebuild exon 1117057 1117093 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.1"; Scaffold009 rebuild transcript 1117158 1118770 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; annotation "hypothetical protein."; Pfam "(1)[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|(2,3)[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "(2,3)ACHA2_MOUSE(e-value:4.2e-16;bit-score:83.0)"; Scaffold009 rebuild exon 1117158 1117186 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1117319 1117373 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1117459 1117509 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1117615 1117704 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1117780 1117819 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1117961 1118070 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1118366 1118559 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild exon 1118638 1118770 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.2"; Scaffold009 rebuild transcript 1117046 1118506 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; annotation "hypothetical protein."; Pfam "(1)[Neur_chan_memb] Neurotransmitter-gated ion-channel transmembrane region|(2,3)[Neur_chan_LBD] Neurotransmitter-gated ion-channel ligand binding domain"; similar_genes "(2,3)ACHA2_MOUSE(e-value:4.2e-16;bit-score:83.0)"; Scaffold009 rebuild exon 1117046 1117094 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1117162 1117186 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1117319 1117373 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1117459 1117509 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1117615 1117704 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1117780 1117819 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1117961 1118070 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild exon 1118366 1118506 . - . gene_id "RvY_13790"; transcript_id "RvY_13790.3"; Scaffold009 rebuild transcript 1120121 1121918 . + . gene_id "RvY_13791"; transcript_id "RvY_13791.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_2] MFS/sugar transport protein"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold009 rebuild exon 1120121 1120404 . + . gene_id "RvY_13791"; transcript_id "RvY_13791.1"; Scaffold009 rebuild exon 1120463 1121030 . + . gene_id "RvY_13791"; transcript_id "RvY_13791.1"; Scaffold009 rebuild exon 1121372 1121625 . + . gene_id "RvY_13791"; transcript_id "RvY_13791.1"; Scaffold009 rebuild exon 1121690 1121918 . + . gene_id "RvY_13791"; transcript_id "RvY_13791.1"; Scaffold009 rebuild transcript 1123163 1127587 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; gene_name "(1)CPT1"; annotation "putative Carnitine O-palmitoyltransferase 1, liver isoform"; Pfam "[Carn_acyltransf] Choline/Carnitine o-acyltransferase"; EC "EC2.3.1.21"; KO "(1)K08765"; similar_genes "(1)CPT1A_HUMAN(e-value:1.5e-43;bit-score:174.0)(2)CPT1A_HUMAN(e-value:4.9e-36;bit-score:149.0)"; Scaffold009 rebuild exon 1123163 1123303 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1123365 1123516 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1123591 1123762 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1124124 1124228 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1124320 1124457 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1124538 1124615 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1124677 1124784 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1124844 1124933 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1125016 1125125 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1125251 1125331 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1125416 1125491 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1125554 1125601 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1125657 1125764 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1125853 1126029 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1126307 1126471 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1126536 1126667 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1126741 1126929 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1126986 1127156 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild exon 1127438 1127587 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.1"; Scaffold009 rebuild transcript 1123163 1125527 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; gene_name "(1)CPT1"; annotation "putative Carnitine O-palmitoyltransferase 1, liver isoform"; Pfam "[Carn_acyltransf] Choline/Carnitine o-acyltransferase"; EC "EC2.3.1.21"; KO "(1)K08765"; similar_genes "(1)CPT1A_HUMAN(e-value:1.5e-43;bit-score:174.0)(2)CPT1A_HUMAN(e-value:4.9e-36;bit-score:149.0)"; Scaffold009 rebuild exon 1123163 1123303 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1123365 1123516 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1123591 1123762 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1124124 1124228 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1124320 1124457 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1124538 1124615 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1124677 1124784 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1124844 1124933 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1125016 1125125 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1125251 1125331 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild exon 1125416 1125527 . + . gene_id "RvY_13792"; transcript_id "RvY_13792.2"; Scaffold009 rebuild transcript 1128214 1129851 . - . gene_id "RvY_13793"; transcript_id "RvY_13793.1"; annotation "hypothetical protein."; Pfam "[Atg14] UV radiation resistance protein and autophagy-related subunit 14"; Scaffold009 rebuild exon 1128214 1128538 . - . gene_id "RvY_13793"; transcript_id "RvY_13793.1"; Scaffold009 rebuild exon 1128830 1129851 . - . gene_id "RvY_13793"; transcript_id "RvY_13793.1"; Scaffold009 rebuild transcript 1130336 1131640 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; gene_name "K07023"; annotation "putative hydrolases of HD superfamily"; Pfam "[HD_3] HD domain|[HD]"; CDD "Predicted hydrolases of HD superfamily [General function prediction only]"; KO "K07023"; similar_genes "HDDC2_DICDI(e-value:3.4e-09;bit-score:60.0)"; Scaffold009 rebuild exon 1130336 1130395 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; Scaffold009 rebuild exon 1130563 1130717 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; Scaffold009 rebuild exon 1130797 1130899 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; Scaffold009 rebuild exon 1130964 1131032 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; Scaffold009 rebuild exon 1131257 1131404 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; Scaffold009 rebuild exon 1131498 1131640 . + . gene_id "RvY_13794"; transcript_id "RvY_13794.1"; Scaffold009 rebuild transcript 1132938 1136624 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; gene_name "GCLC"; annotation "Glutamate--cysteine ligase catalytic subunit"; Pfam "[GCS] Glutamate-cysteine ligase"; EC "EC6.3.2.2"; KO "K11204"; similar_genes "GSH1_HUMAN(e-value:6.6e-57;bit-score:218.0)"; Scaffold009 rebuild exon 1132938 1132955 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1133113 1133228 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1133510 1133707 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1133809 1133928 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1133996 1134054 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1134125 1134267 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1134369 1134443 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1134683 1134799 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1134881 1135019 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1135091 1135203 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1135487 1135579 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1135642 1135828 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1135894 1136112 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild exon 1136383 1136624 . + . gene_id "RvY_13795"; transcript_id "RvY_13795.1"; Scaffold009 rebuild transcript 1137191 1139350 . - . gene_id "RvY_13796"; transcript_id "RvY_13796.1"; gene_name "COG5273"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[zf-DHHC] DHHC palmitoyltransferase|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDH17_MOUSE(e-value:5.6e-20;bit-score:95.0)"; Scaffold009 rebuild exon 1137191 1138038 . - . gene_id "RvY_13796"; transcript_id "RvY_13796.1"; Scaffold009 rebuild exon 1138257 1138931 . - . gene_id "RvY_13796"; transcript_id "RvY_13796.1"; Scaffold009 rebuild exon 1139065 1139350 . - . gene_id "RvY_13796"; transcript_id "RvY_13796.1"; Scaffold009 rebuild transcript 1139896 1140364 . + . gene_id "RvY_13797"; transcript_id "RvY_13797.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1139896 1140046 . + . gene_id "RvY_13797"; transcript_id "RvY_13797.1"; Scaffold009 rebuild exon 1140123 1140364 . + . gene_id "RvY_13797"; transcript_id "RvY_13797.1"; Scaffold009 rebuild transcript 1142879 1148579 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; gene_name "MgtA"; annotation "hypothetical protein."; CDD "Cation transport ATPase [Inorganic ion transport and metabolism]"; similar_genes "K0195_HUMAN(e-value:1.4e-18;bit-score:91.0)"; Scaffold009 rebuild exon 1142879 1143727 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1144005 1144174 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1144245 1144580 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1144799 1145054 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1145331 1145593 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1145703 1145905 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1146069 1146463 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1146612 1146833 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1146928 1147248 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1147520 1147872 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1148020 1148500 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild exon 1148568 1148579 . - . gene_id "RvY_13798"; transcript_id "RvY_13798.1"; Scaffold009 rebuild transcript 1151332 1153043 . - . gene_id "RvY_13799"; transcript_id "RvY_13799.1"; gene_name "MFS"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; Scaffold009 rebuild exon 1151332 1151955 . - . gene_id "RvY_13799"; transcript_id "RvY_13799.1"; Scaffold009 rebuild exon 1152046 1152532 . - . gene_id "RvY_13799"; transcript_id "RvY_13799.1"; Scaffold009 rebuild exon 1152685 1153043 . - . gene_id "RvY_13799"; transcript_id "RvY_13799.1"; Scaffold009 rebuild transcript 1154374 1156195 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold009 rebuild exon 1154374 1154668 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1154744 1154824 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1154886 1155004 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1155077 1155215 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1155298 1155494 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1155611 1155770 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1155856 1155975 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild exon 1156050 1156195 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.1"; Scaffold009 rebuild transcript 1154740 1156195 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold009 rebuild exon 1154740 1154824 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild exon 1154886 1155004 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild exon 1155077 1155215 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild exon 1155298 1155494 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild exon 1155611 1155770 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild exon 1155856 1155975 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild exon 1156050 1156195 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.2"; Scaffold009 rebuild transcript 1154374 1155839 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold009 rebuild exon 1154374 1154668 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; Scaffold009 rebuild exon 1154744 1154824 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; Scaffold009 rebuild exon 1154886 1155004 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; Scaffold009 rebuild exon 1155077 1155215 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; Scaffold009 rebuild exon 1155298 1155494 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; Scaffold009 rebuild exon 1155798 1155839 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.3"; Scaffold009 rebuild transcript 1155299 1156195 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.4"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold009 rebuild exon 1155299 1155770 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.4"; Scaffold009 rebuild exon 1155856 1155975 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.4"; Scaffold009 rebuild exon 1156050 1156195 . - . gene_id "RvY_13800"; transcript_id "RvY_13800.4"; Scaffold009 rebuild transcript 1156563 1158824 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; gene_name "gadB"; annotation "putative Glutamate decarboxylase-like protein 1"; Pfam "[Pyridoxal_deC] Pyridoxal-dependent decarboxylase conserved domain|[Beta_elim_lyase] Beta-eliminating lyase|[Aminotran_5] Aminotransferase class-V"; CDD "DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is Scaffold009 rebuild exon 1156563 1156712 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1156771 1156864 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1157059 1157149 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1157240 1157358 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1157457 1157827 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1157937 1158001 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1158072 1158150 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1158224 1158574 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild exon 1158642 1158824 . + . gene_id "RvY_13801"; transcript_id "RvY_13801.1"; Scaffold009 rebuild transcript 1162091 1162303 . - . gene_id "RvY_13802"; transcript_id "RvY_13802.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1162091 1162303 . - . gene_id "RvY_13802"; transcript_id "RvY_13802.1"; Scaffold009 rebuild transcript 1163302 1172163 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1163302 1163888 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild exon 1164289 1164946 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild exon 1165303 1165984 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild exon 1166234 1166573 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild exon 1169620 1170124 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild exon 1170494 1171210 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild exon 1171468 1172163 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.1"; Scaffold009 rebuild transcript 1163302 1166577 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1163302 1163888 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.2"; Scaffold009 rebuild exon 1164289 1164946 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.2"; Scaffold009 rebuild exon 1165303 1165984 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.2"; Scaffold009 rebuild exon 1166234 1166577 . + . gene_id "RvY_13803"; transcript_id "RvY_13803.2"; Scaffold009 rebuild transcript 1166996 1168657 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; annotation "putative Mps one binder kinase activator-like 2B"; Pfam "[Mob1_phocein] Mob1/phocein family"; similar_genes "MOL2B_BOVIN(e-value:1.3e-38;bit-score:157.0)"; Scaffold009 rebuild exon 1166996 1167052 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1167158 1167244 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1167353 1167468 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1167824 1167957 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1168054 1168106 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1168229 1168269 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1168335 1168485 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild exon 1168583 1168657 . - . gene_id "RvY_13804"; transcript_id "RvY_13804.1"; Scaffold009 rebuild transcript 1172992 1176682 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; gene_name "2a30"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "K-Cl cotransporter."; KO "(1)K14428"; Scaffold009 rebuild exon 1172992 1173108 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1173384 1173524 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1173634 1173828 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1173928 1173955 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1174052 1174147 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1174221 1174334 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1174399 1174504 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1174568 1174602 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1174672 1174732 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1174855 1174942 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1175019 1175114 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1175209 1175259 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1175322 1175431 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1175598 1175890 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1175957 1176030 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1176314 1176431 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild exon 1176495 1176682 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.1"; Scaffold009 rebuild transcript 1174087 1176682 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; gene_name "2a30"; annotation "hypothetical protein."; Pfam "[AA_permease] Amino acid permease|[AA_permease_2] Amino acid permease"; CDD "K-Cl cotransporter."; KO "(1)K14428"; Scaffold009 rebuild exon 1174087 1174147 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1174221 1174334 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1174399 1174504 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1174568 1174602 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1174672 1174732 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1174855 1174942 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1175019 1175114 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1175209 1175259 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1175322 1175431 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1175598 1175890 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1175957 1176030 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1176314 1176431 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild exon 1176495 1176682 . + . gene_id "RvY_13805"; transcript_id "RvY_13805.2"; Scaffold009 rebuild transcript 1174655 1174975 . - . gene_id "RvY_13806"; transcript_id "RvY_13806.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1174655 1174975 . - . gene_id "RvY_13806"; transcript_id "RvY_13806.1"; Scaffold009 rebuild transcript 1177194 1177439 . - . gene_id "RvY_13807"; transcript_id "RvY_13807.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1177194 1177439 . - . gene_id "RvY_13807"; transcript_id "RvY_13807.1"; Scaffold009 rebuild transcript 1177721 1178099 . - . gene_id "RvY_13808"; transcript_id "RvY_13808.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1177721 1177953 . - . gene_id "RvY_13808"; transcript_id "RvY_13808.1"; Scaffold009 rebuild exon 1178069 1178099 . - . gene_id "RvY_13808"; transcript_id "RvY_13808.1"; Scaffold009 rebuild transcript 1179246 1180854 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; annotation "hypothetical protein."; Pfam "[ApoO] Apolipoprotein O"; Scaffold009 rebuild exon 1179246 1179385 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild exon 1179471 1179596 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild exon 1179788 1179883 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild exon 1180098 1180152 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild exon 1180269 1180400 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild exon 1180587 1180712 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild exon 1180849 1180854 . - . gene_id "RvY_13809"; transcript_id "RvY_13809.1"; Scaffold009 rebuild transcript 1181434 1184139 . + . gene_id "RvY_13810"; transcript_id "RvY_13810.1"; annotation "hypothetical protein."; Pfam "[PRKCSH-like] Glucosidase II beta subunit-like"; Scaffold009 rebuild exon 1181434 1181827 . + . gene_id "RvY_13810"; transcript_id "RvY_13810.1"; Scaffold009 rebuild exon 1183536 1183827 . + . gene_id "RvY_13810"; transcript_id "RvY_13810.1"; Scaffold009 rebuild exon 1183923 1184139 . + . gene_id "RvY_13810"; transcript_id "RvY_13810.1"; Scaffold009 rebuild transcript 1182290 1188434 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; annotation "hypothetical protein."; Pfam "[zf-C2HC_2] zinc-finger of a C2HC-type"; Scaffold009 rebuild exon 1182290 1182555 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1184350 1184429 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1184501 1184779 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1185087 1185859 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1186152 1186306 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1186375 1186405 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1186525 1186761 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild exon 1188288 1188434 . - . gene_id "RvY_13811"; transcript_id "RvY_13811.1"; Scaffold009 rebuild transcript 1190881 1193668 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; annotation "putative Myotubularin-related protein 9"; Pfam "[Y_phosphatase_m] Myotubularin Y_phosphatase-like|[Myotub-related] Myotubularin-related"; similar_genes "MTMR9_BOVIN(e-value:7.0e-48;bit-score:188.0)"; Scaffold009 rebuild exon 1190881 1191042 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1191128 1191445 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1191497 1191779 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1191876 1192031 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1192313 1192784 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1193176 1193275 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1193374 1193501 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild exon 1193566 1193668 . + . gene_id "RvY_13812"; transcript_id "RvY_13812.1"; Scaffold009 rebuild transcript 1198583 1201897 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; gene_name "HEY"; annotation "hairy and enhancer of split related with YRPW motif"; Pfam "[Hairy_orange] Hairy Orange|[HLH] Helix-loop-helix DNA-binding domain"; KO "K09091"; similar_genes "HEY1_BOVIN(e-value:3.7e-19;bit-score:93.0)"; Scaffold009 rebuild exon 1198583 1198782 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; Scaffold009 rebuild exon 1199119 1199502 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; Scaffold009 rebuild exon 1200592 1200652 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; Scaffold009 rebuild exon 1200771 1200854 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; Scaffold009 rebuild exon 1201462 1201537 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; Scaffold009 rebuild exon 1201683 1201897 . - . gene_id "RvY_13813"; transcript_id "RvY_13813.1"; Scaffold009 rebuild transcript 1201489 1202555 . + . gene_id "RvY_13814"; transcript_id "RvY_13814.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1201489 1201560 . + . gene_id "RvY_13814"; transcript_id "RvY_13814.1"; Scaffold009 rebuild exon 1201661 1201910 . + . gene_id "RvY_13814"; transcript_id "RvY_13814.1"; Scaffold009 rebuild exon 1202104 1202255 . + . gene_id "RvY_13814"; transcript_id "RvY_13814.1"; Scaffold009 rebuild exon 1202535 1202555 . + . gene_id "RvY_13814"; transcript_id "RvY_13814.1"; Scaffold009 rebuild transcript 1205147 1213983 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[DUF3166]|[IncA] IncA protein"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold009 rebuild exon 1205147 1206137 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1206212 1206268 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1206471 1206538 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1206614 1206838 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1206899 1207078 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1207154 1207414 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1207483 1207659 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1207833 1208816 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1209179 1209292 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1209391 1209623 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1209708 1210244 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1210735 1211278 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1211358 1211417 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1211991 1212378 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild exon 1212764 1213983 . - . gene_id "RvY_13815"; transcript_id "RvY_13815.1"; Scaffold009 rebuild transcript 1216628 1217086 . + . gene_id "RvY_13816"; transcript_id "RvY_13816.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1216628 1217086 . + . gene_id "RvY_13816"; transcript_id "RvY_13816.1"; Scaffold009 rebuild transcript 1217209 1217856 . + . gene_id "RvY_13817"; transcript_id "RvY_13817.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1217209 1217856 . + . gene_id "RvY_13817"; transcript_id "RvY_13817.1"; Scaffold009 rebuild transcript 1218091 1218623 . - . gene_id "RvY_13818"; transcript_id "RvY_13818.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold009 rebuild exon 1218091 1218450 . - . gene_id "RvY_13818"; transcript_id "RvY_13818.1"; Scaffold009 rebuild exon 1218564 1218623 . - . gene_id "RvY_13818"; transcript_id "RvY_13818.1"; Scaffold009 rebuild transcript 1218670 1219244 . - . gene_id "RvY_13819"; transcript_id "RvY_13819.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:8.2e-17;bit-score:85.0)"; Scaffold009 rebuild exon 1218670 1218791 . - . gene_id "RvY_13819"; transcript_id "RvY_13819.1"; Scaffold009 rebuild exon 1218905 1219244 . - . gene_id "RvY_13819"; transcript_id "RvY_13819.1"; Scaffold009 rebuild transcript 1219316 1219885 . - . gene_id "RvY_13820"; transcript_id "RvY_13820.1"; annotation "hypothetical protein."; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:8.4e-19;bit-score:92.0)"; Scaffold009 rebuild exon 1219316 1219885 . - . gene_id "RvY_13820"; transcript_id "RvY_13820.1"; Scaffold009 rebuild transcript 1220056 1220610 . - . gene_id "RvY_13821"; transcript_id "RvY_13821.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1220056 1220610 . - . gene_id "RvY_13821"; transcript_id "RvY_13821.1"; Scaffold009 rebuild transcript 1221200 1225438 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; gene_name "PREP"; annotation "Prolyl endopeptidase"; Pfam "[Peptidase_S9] Prolyl oligopeptidase family|[Peptidase_S9_N] Prolyl oligopeptidase, N-terminal beta-propeller domain"; CDD "Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]"; EC "EC3.4.21.26"; KO "K01322"; similar_genes "PPCE_HUMAN(e-value:1.0e-76;bit-score:284.0)"; Scaffold009 rebuild exon 1221200 1221511 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1221605 1221732 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1221836 1221931 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1222018 1222189 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1222264 1222365 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1222663 1222974 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1223041 1223136 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1223338 1223442 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1223506 1223610 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1223714 1223794 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1223868 1223981 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1224078 1224226 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1224291 1224407 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1224547 1224597 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1224671 1224715 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1224788 1224889 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1224949 1225174 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild exon 1225364 1225438 . + . gene_id "RvY_13822"; transcript_id "RvY_13822.1"; Scaffold009 rebuild transcript 1225843 1228212 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; gene_name "TLC"; annotation "hypothetical protein."; Pfam "[TRAM_LAG1_CLN8] TLC domain|[TRAM1] TRAM1-like protein"; CDD "TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains."; KO "K14010"; similar_genes "TR1L1_XENLA(e-value:2.7e-11;bit-score:67.0)"; Scaffold009 rebuild exon 1225843 1226143 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1226414 1226557 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1226631 1226741 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1226814 1226884 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1226955 1227008 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1227088 1227118 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1227181 1227239 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1227307 1227423 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1227485 1227597 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1227681 1227753 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1227969 1228043 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild exon 1228141 1228212 . - . gene_id "RvY_13823"; transcript_id "RvY_13823.1"; Scaffold009 rebuild transcript 1228375 1228632 . - . gene_id "RvY_13824"; transcript_id "RvY_13824.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1228375 1228632 . - . gene_id "RvY_13824"; transcript_id "RvY_13824.1"; Scaffold009 rebuild transcript 1228846 1235532 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; gene_name "Bromo_RACK7"; annotation "hypothetical protein."; Pfam "[Bromodomain]"; CDD "Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine."; Scaffold009 rebuild exon 1228846 1229321 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1229398 1229560 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1229771 1230016 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1230088 1230201 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1230288 1230404 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1230474 1230561 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1230633 1230909 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1231005 1231112 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1231364 1231733 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1232073 1232738 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1233071 1233602 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1233686 1234086 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1234293 1234466 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1234697 1234769 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1234840 1234919 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild exon 1235203 1235532 . + . gene_id "RvY_13825"; transcript_id "RvY_13825.1"; Scaffold009 rebuild transcript 1238532 1241884 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1238532 1238684 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1238763 1238948 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1239083 1239196 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1239280 1239366 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1239437 1239524 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1239588 1239745 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1240211 1240323 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1240392 1240520 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1240604 1241699 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild exon 1241780 1241884 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.1"; Scaffold009 rebuild transcript 1239107 1241884 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1239107 1239196 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1239280 1239366 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1239437 1239524 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1239588 1239745 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1240211 1240323 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1240392 1240520 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1240604 1241103 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1241185 1241699 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild exon 1241780 1241884 . + . gene_id "RvY_13826"; transcript_id "RvY_13826.2"; Scaffold009 rebuild transcript 1238877 1239520 . - . gene_id "RvY_13827"; transcript_id "RvY_13827.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1238877 1238992 . - . gene_id "RvY_13827"; transcript_id "RvY_13827.1"; Scaffold009 rebuild exon 1239463 1239520 . - . gene_id "RvY_13827"; transcript_id "RvY_13827.1"; Scaffold009 rebuild transcript 1244578 1244835 . + . gene_id "RvY_13828"; transcript_id "RvY_13828.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1244578 1244835 . + . gene_id "RvY_13828"; transcript_id "RvY_13828.1"; Scaffold009 rebuild transcript 1244912 1246148 . + . gene_id "RvY_13829"; transcript_id "RvY_13829.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1244912 1245216 . + . gene_id "RvY_13829"; transcript_id "RvY_13829.1"; Scaffold009 rebuild exon 1246139 1246148 . + . gene_id "RvY_13829"; transcript_id "RvY_13829.1"; Scaffold009 rebuild transcript 1246514 1249192 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1246514 1246753 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild exon 1246777 1246987 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild exon 1247215 1247420 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild exon 1247476 1247624 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild exon 1247868 1248216 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild exon 1248490 1248782 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild exon 1248922 1249192 . - . gene_id "RvY_13830"; transcript_id "RvY_13830.1"; Scaffold009 rebuild transcript 1249622 1250221 . + . gene_id "RvY_13831"; transcript_id "RvY_13831.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1249622 1249762 . + . gene_id "RvY_13831"; transcript_id "RvY_13831.1"; Scaffold009 rebuild exon 1249877 1250048 . + . gene_id "RvY_13831"; transcript_id "RvY_13831.1"; Scaffold009 rebuild exon 1250133 1250221 . + . gene_id "RvY_13831"; transcript_id "RvY_13831.1"; Scaffold009 rebuild transcript 1253024 1264165 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; gene_name "HD"; annotation "huntingtin"; KO "K04533"; Scaffold009 rebuild exon 1253024 1253392 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1253655 1253858 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1253943 1254022 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1254092 1254159 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1254217 1254471 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1254659 1254843 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1254912 1255067 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1255140 1255819 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1256108 1256432 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1256494 1257576 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1257951 1258451 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1258505 1258997 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1259279 1259563 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1259632 1260282 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1260492 1261204 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1261475 1262617 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1262960 1263102 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1263173 1263453 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1263543 1263688 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1263763 1263982 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild exon 1264050 1264165 . - . gene_id "RvY_13832"; transcript_id "RvY_13832.1"; Scaffold009 rebuild transcript 1264563 1265787 . + . gene_id "RvY_13833"; transcript_id "RvY_13833.1"; gene_name "SEC20"; annotation "protein transport protein SEC20"; Pfam "[Sec20]"; CDD "Sec20. Sec20 is a membrane glycoprotein associated with secretory pathway."; KO "K08497"; Scaffold009 rebuild exon 1264563 1264745 . + . gene_id "RvY_13833"; transcript_id "RvY_13833.1"; Scaffold009 rebuild exon 1264862 1264953 . + . gene_id "RvY_13833"; transcript_id "RvY_13833.1"; Scaffold009 rebuild exon 1265182 1265423 . + . gene_id "RvY_13833"; transcript_id "RvY_13833.1"; Scaffold009 rebuild exon 1265486 1265787 . + . gene_id "RvY_13833"; transcript_id "RvY_13833.1"; Scaffold009 rebuild transcript 1265841 1266059 . - . gene_id "RvY_13834"; transcript_id "RvY_13834.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1265841 1266059 . - . gene_id "RvY_13834"; transcript_id "RvY_13834.1"; Scaffold009 rebuild transcript 1266999 1269368 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; gene_name "K01106"; annotation "inositol-1,4,5-trisphosphate 5-phosphatase [EC:3.1.3.56]"; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; CDD "Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes."; EC "EC3.1.3.56"; KO "K01106"; Scaffold009 rebuild exon 1266999 1267153 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1267257 1267349 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1267446 1267646 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1267732 1267960 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1268058 1268165 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1268248 1268321 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1268381 1268602 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1268671 1268824 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1268897 1268943 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1269021 1269108 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild exon 1269183 1269368 . + . gene_id "RvY_13835"; transcript_id "RvY_13835.1"; Scaffold009 rebuild transcript 1269582 1273553 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; gene_name "SF-CC1"; annotation "hypothetical protein."; Pfam "[NRDE-2] NRDE-2, necessary for RNA interference|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed."; Scaffold009 rebuild exon 1269582 1269777 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1269842 1269996 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1270072 1270155 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1270228 1270506 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1270607 1270849 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1270930 1270968 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1271089 1271193 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1271277 1271475 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1271558 1271711 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1271798 1271980 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1272043 1272190 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1272265 1272551 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1272650 1272934 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1273012 1273122 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1273211 1273337 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild exon 1273416 1273553 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.1"; Scaffold009 rebuild transcript 1270192 1273553 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; gene_name "SF-CC1"; annotation "hypothetical protein."; Pfam "[NRDE-2] NRDE-2, necessary for RNA interference|[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed."; Scaffold009 rebuild exon 1270192 1270506 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1270607 1270849 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1270930 1270968 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1271089 1271193 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1271277 1271475 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1271558 1271711 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1271798 1271980 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1272043 1272190 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1272265 1272551 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1272650 1272934 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1273012 1273122 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1273211 1273337 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild exon 1273416 1273553 . - . gene_id "RvY_13836"; transcript_id "RvY_13836.2"; Scaffold009 rebuild transcript 1275045 1276026 . + . gene_id "RvY_13837"; transcript_id "RvY_13837.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1275045 1275143 . + . gene_id "RvY_13837"; transcript_id "RvY_13837.1"; Scaffold009 rebuild exon 1275997 1276026 . + . gene_id "RvY_13837"; transcript_id "RvY_13837.1"; Scaffold009 rebuild transcript 1277772 1284055 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; gene_name "CYP2U"; annotation "cytochrome P450, family 2, subfamily U"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.14.1"; KO "K07422"; similar_genes "CP2D3_RAT(e-value:1.6e-13;bit-score:74.0)"; Scaffold009 rebuild exon 1277772 1278174 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; Scaffold009 rebuild exon 1282152 1282445 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; Scaffold009 rebuild exon 1282508 1282756 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; Scaffold009 rebuild exon 1283230 1283575 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; Scaffold009 rebuild exon 1283654 1283745 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; Scaffold009 rebuild exon 1283817 1284055 . + . gene_id "RvY_13838"; transcript_id "RvY_13838.1"; Scaffold009 rebuild transcript 1277858 1278040 . - . gene_id "RvY_13839"; transcript_id "RvY_13839.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1277858 1278040 . - . gene_id "RvY_13839"; transcript_id "RvY_13839.1"; Scaffold009 rebuild transcript 1285180 1287066 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; gene_name "SrmB"; annotation "putative Spliceosome RNA helicase BAT1 homolog"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; similar_genes "UAP56_CAEEL(e-value:8.7e-42;bit-score:168.0)"; Scaffold009 rebuild exon 1285180 1285301 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1285370 1285464 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1285585 1285665 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1285746 1286029 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1286102 1286260 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1286345 1286487 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1286569 1286747 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild exon 1286807 1287066 . + . gene_id "RvY_13840"; transcript_id "RvY_13840.1"; Scaffold009 rebuild transcript 1289112 1292635 . + . gene_id "RvY_13841"; transcript_id "RvY_13841.1"; gene_name "SAC3"; annotation "hypothetical protein."; Pfam "[SAC3_GANP] SAC3/GANP/Nin1/mts3/eIF-3 p25 family"; CDD "Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]"; Scaffold009 rebuild exon 1289112 1289401 . + . gene_id "RvY_13841"; transcript_id "RvY_13841.1"; Scaffold009 rebuild exon 1289464 1290547 . + . gene_id "RvY_13841"; transcript_id "RvY_13841.1"; Scaffold009 rebuild exon 1290613 1291023 . + . gene_id "RvY_13841"; transcript_id "RvY_13841.1"; Scaffold009 rebuild exon 1291123 1292082 . + . gene_id "RvY_13841"; transcript_id "RvY_13841.1"; Scaffold009 rebuild exon 1292159 1292635 . + . gene_id "RvY_13841"; transcript_id "RvY_13841.1"; Scaffold009 rebuild transcript 1293875 1294443 . + . gene_id "RvY_13842"; transcript_id "RvY_13842.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1293875 1294265 . + . gene_id "RvY_13842"; transcript_id "RvY_13842.1"; Scaffold009 rebuild exon 1294421 1294443 . + . gene_id "RvY_13842"; transcript_id "RvY_13842.1"; Scaffold009 rebuild transcript 1293875 1294282 . + . gene_id "RvY_13842"; transcript_id "RvY_13842.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1293875 1294282 . + . gene_id "RvY_13842"; transcript_id "RvY_13842.2"; Scaffold009 rebuild transcript 1294630 1295743 . + . gene_id "RvY_13843"; transcript_id "RvY_13843.1"; gene_name "MRP_assoc_pro"; annotation "hypothetical protein."; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; Scaffold009 rebuild exon 1294630 1294890 . + . gene_id "RvY_13843"; transcript_id "RvY_13843.1"; Scaffold009 rebuild exon 1295054 1295185 . + . gene_id "RvY_13843"; transcript_id "RvY_13843.1"; Scaffold009 rebuild exon 1295273 1295410 . + . gene_id "RvY_13843"; transcript_id "RvY_13843.1"; Scaffold009 rebuild exon 1295466 1295582 . + . gene_id "RvY_13843"; transcript_id "RvY_13843.1"; Scaffold009 rebuild exon 1295645 1295743 . + . gene_id "RvY_13843"; transcript_id "RvY_13843.1"; Scaffold009 rebuild transcript 1295818 1301311 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; gene_name "ABCC1"; annotation "Multidrug resistance-associated protein 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[AAA_25] AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; KO "K05665"; similar_genes "MRP1_CHICK(e-value:3.0e-112;bit-score:402.0)"; Scaffold009 rebuild exon 1295818 1295951 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1296045 1296212 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1296315 1296462 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1296546 1296785 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1296906 1296950 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1297016 1297242 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1297349 1297411 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1297480 1297540 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1297709 1297747 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1297833 1298374 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1298443 1298912 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1298985 1299239 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1299324 1299490 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1299564 1299638 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1299708 1300520 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1300587 1300753 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1300813 1300913 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1300990 1301083 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild exon 1301200 1301311 . + . gene_id "RvY_13844"; transcript_id "RvY_13844.1"; Scaffold009 rebuild transcript 1303155 1304247 . + . gene_id "RvY_13845"; transcript_id "RvY_13845.1"; gene_name "MRP_assoc_pro"; annotation "hypothetical protein."; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; Scaffold009 rebuild exon 1303155 1303415 . + . gene_id "RvY_13845"; transcript_id "RvY_13845.1"; Scaffold009 rebuild exon 1303579 1303710 . + . gene_id "RvY_13845"; transcript_id "RvY_13845.1"; Scaffold009 rebuild exon 1303790 1303927 . + . gene_id "RvY_13845"; transcript_id "RvY_13845.1"; Scaffold009 rebuild exon 1303983 1304099 . + . gene_id "RvY_13845"; transcript_id "RvY_13845.1"; Scaffold009 rebuild exon 1304173 1304247 . + . gene_id "RvY_13845"; transcript_id "RvY_13845.1"; Scaffold009 rebuild transcript 1303871 1304137 . - . gene_id "RvY_13846"; transcript_id "RvY_13846.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1303871 1304137 . - . gene_id "RvY_13846"; transcript_id "RvY_13846.1"; Scaffold009 rebuild transcript 1304263 1309480 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; gene_name "ABCC1"; annotation "Multidrug resistance-associated protein 1"; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_16] AAA ATPase domain|[AAA_29] P-loop containing region of AAA domain|[AAA_25] AAA domain|[ABC_membrane] ABC transporter transmembrane region|[MMR_HSR1] 50S ribosome-binding GTPase|[AAA_21] AAA domain|[ABC_tran] ABC transporter"; CDD "multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved."; KO "K05665"; similar_genes "MRP1_CHICK(e-value:2.3e-114;bit-score:409.0)"; Scaffold009 rebuild exon 1304263 1304324 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1304415 1304546 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1304609 1304776 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1304857 1305004 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1305089 1305373 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1305439 1305665 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1305801 1306505 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1306574 1307061 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1307123 1307377 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1307437 1307603 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1307690 1307764 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1307848 1308116 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1308179 1308722 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1308789 1308955 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1309012 1309112 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1309169 1309262 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild exon 1309369 1309480 . + . gene_id "RvY_13847"; transcript_id "RvY_13847.1"; Scaffold009 rebuild transcript 1310870 1314515 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; gene_name "KIF3_17"; annotation "putative Kinesin-like protein Klp68D"; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division."; KO "K10394"; similar_genes "KLP68_DROME(e-value:1.4e-46;bit-score:184.0)"; Scaffold009 rebuild exon 1310870 1310958 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1311012 1311113 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1311197 1311321 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1311442 1311557 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1311660 1311755 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1311871 1311950 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1312020 1312182 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1312248 1312377 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1312450 1312537 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1312621 1312716 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1312781 1312964 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1313029 1313229 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1313316 1313435 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1313498 1313616 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1313723 1313821 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1313892 1313982 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1314045 1314211 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1314286 1314384 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild exon 1314455 1314515 . + . gene_id "RvY_13848"; transcript_id "RvY_13848.1"; Scaffold009 rebuild transcript 1314886 1319193 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; gene_name "(1)MAN2B1"; annotation "putative Lysosomal alpha-mannosidase"; Pfam "[Alpha-mann_mid] Alpha mannosidase, middle domain|[Glyco_hydro_38C] Glycosyl hydrolases family 38 C-terminal domain|[Glyco_hydro_38] Glycosyl hydrolases family 38 N-terminal domain"; EC "EC3.2.1.24"; KO "(1)K12311"; similar_genes "MA2B1_MOUSE(e-value:7.5e-39;bit-score:158.0)"; Scaffold009 rebuild exon 1314886 1315017 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1315292 1315362 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1315447 1315495 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1315572 1315728 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1315817 1315950 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1316013 1316043 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1316127 1316197 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1316262 1316423 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1316506 1316694 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1316787 1317097 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1317165 1317348 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1317435 1317669 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1317782 1317885 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1317961 1318188 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1318247 1318365 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1318428 1318529 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1318607 1318781 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild exon 1318951 1319193 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.1"; Scaffold009 rebuild transcript 1316153 1319668 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; gene_name "(1)MAN2B1"; annotation "putative Lysosomal alpha-mannosidase"; Pfam "[Alpha-mann_mid] Alpha mannosidase, middle domain|[Glyco_hydro_38C] Glycosyl hydrolases family 38 C-terminal domain|[Glyco_hydro_38] Glycosyl hydrolases family 38 N-terminal domain"; EC "EC3.2.1.24"; KO "(1)K12311"; similar_genes "MA2B1_MOUSE(e-value:7.5e-39;bit-score:158.0)"; Scaffold009 rebuild exon 1316153 1316197 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1316262 1316423 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1316506 1316694 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1316787 1317097 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1317165 1317348 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1317435 1317669 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1317782 1317885 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1317961 1318188 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1318247 1318365 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1318428 1318529 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1318607 1318781 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1318951 1319184 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1319246 1319504 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild exon 1319574 1319668 . + . gene_id "RvY_13849"; transcript_id "RvY_13849.2"; Scaffold009 rebuild transcript 1319912 1320760 . - . gene_id "RvY_13850"; transcript_id "RvY_13850.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1319912 1319983 . - . gene_id "RvY_13850"; transcript_id "RvY_13850.1"; Scaffold009 rebuild exon 1320719 1320760 . - . gene_id "RvY_13850"; transcript_id "RvY_13850.1"; Scaffold009 rebuild transcript 1320836 1321009 . - . gene_id "RvY_13851"; transcript_id "RvY_13851.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1320836 1321009 . - . gene_id "RvY_13851"; transcript_id "RvY_13851.1"; Scaffold009 rebuild transcript 1322907 1325485 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; gene_name "(1)ERG5"; annotation "(1)C-22 sterol desaturase [EC:1.14.14.-](2)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.14.-"; KO "(1)K09831"; Scaffold009 rebuild exon 1322907 1323273 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; Scaffold009 rebuild exon 1323819 1323851 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; Scaffold009 rebuild exon 1323925 1324467 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; Scaffold009 rebuild exon 1324704 1324964 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; Scaffold009 rebuild exon 1325048 1325233 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; Scaffold009 rebuild exon 1325301 1325485 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.1"; Scaffold009 rebuild transcript 1322907 1325113 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.2"; gene_name "(1)ERG5"; annotation "(1)C-22 sterol desaturase [EC:1.14.14.-](2)hypothetical protein."; Pfam "[p450] Cytochrome P450"; EC "(1)EC1.14.14.-"; KO "(1)K09831"; Scaffold009 rebuild exon 1322907 1323273 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.2"; Scaffold009 rebuild exon 1323819 1323851 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.2"; Scaffold009 rebuild exon 1323925 1324467 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.2"; Scaffold009 rebuild exon 1324704 1325113 . + . gene_id "RvY_13852"; transcript_id "RvY_13852.2"; Scaffold009 rebuild transcript 1325662 1327323 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; gene_name "K06883"; annotation "GPN-loop GTPase 3"; Pfam "[ATP_bind_1] Conserved hypothetical ATP binding protein"; KO "K06883"; similar_genes "GPN3_MOUSE(e-value:3.7e-70;bit-score:262.0)"; Scaffold009 rebuild exon 1325662 1325910 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild exon 1326046 1326139 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild exon 1326218 1326458 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild exon 1326515 1326594 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild exon 1326677 1326764 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild exon 1326847 1326955 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild exon 1327078 1327323 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.1"; Scaffold009 rebuild transcript 1325662 1327122 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; gene_name "K06883"; annotation "GPN-loop GTPase 3"; Pfam "[ATP_bind_1] Conserved hypothetical ATP binding protein"; KO "K06883"; similar_genes "GPN3_MOUSE(e-value:3.7e-70;bit-score:262.0)"; Scaffold009 rebuild exon 1325662 1325718 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1325782 1325910 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1326046 1326139 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1326218 1326458 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1326515 1326594 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1326677 1326764 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1326847 1326955 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild exon 1327078 1327122 . - . gene_id "RvY_13853"; transcript_id "RvY_13853.2"; Scaffold009 rebuild transcript 1327530 1328507 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; gene_name "ARPC3"; annotation "Actin-related protein 2/3 complex subunit 3"; Pfam "[P21-Arc] ARP2/3 complex ARPC3 (21 kDa) subunit"; KO "K05756"; similar_genes "ARPC3_MOUSE(e-value:4.9e-55;bit-score:212.0)"; Scaffold009 rebuild exon 1327530 1327535 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; Scaffold009 rebuild exon 1327615 1327717 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; Scaffold009 rebuild exon 1327846 1327991 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; Scaffold009 rebuild exon 1328067 1328193 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; Scaffold009 rebuild exon 1328282 1328376 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; Scaffold009 rebuild exon 1328445 1328507 . + . gene_id "RvY_13854"; transcript_id "RvY_13854.1"; Scaffold009 rebuild transcript 1328817 1330791 . - . gene_id "RvY_13855"; transcript_id "RvY_13855.1"; gene_name "HflX"; annotation "putative Putative GTP-binding protein 6"; Pfam "[Miro] Miro-like protein|[MMR_HSR1] 50S ribosome-binding GTPase"; CDD "GTPases [General function prediction only]"; similar_genes "GTPB6_XENLA(e-value:7.4e-37;bit-score:152.0)"; Scaffold009 rebuild exon 1328817 1328961 . - . gene_id "RvY_13855"; transcript_id "RvY_13855.1"; Scaffold009 rebuild exon 1329065 1329235 . - . gene_id "RvY_13855"; transcript_id "RvY_13855.1"; Scaffold009 rebuild exon 1329343 1329476 . - . gene_id "RvY_13855"; transcript_id "RvY_13855.1"; Scaffold009 rebuild exon 1329572 1329916 . - . gene_id "RvY_13855"; transcript_id "RvY_13855.1"; Scaffold009 rebuild exon 1330102 1330791 . - . gene_id "RvY_13855"; transcript_id "RvY_13855.1"; Scaffold009 rebuild transcript 1331693 1333145 . + . gene_id "RvY_13856"; transcript_id "RvY_13856.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1331693 1331946 . + . gene_id "RvY_13856"; transcript_id "RvY_13856.1"; Scaffold009 rebuild exon 1332236 1332422 . + . gene_id "RvY_13856"; transcript_id "RvY_13856.1"; Scaffold009 rebuild exon 1332510 1333145 . + . gene_id "RvY_13856"; transcript_id "RvY_13856.1"; Scaffold009 rebuild transcript 1333332 1334098 . + . gene_id "RvY_13857"; transcript_id "RvY_13857.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1333332 1333467 . + . gene_id "RvY_13857"; transcript_id "RvY_13857.1"; Scaffold009 rebuild exon 1333619 1333681 . + . gene_id "RvY_13857"; transcript_id "RvY_13857.1"; Scaffold009 rebuild exon 1333763 1333869 . + . gene_id "RvY_13857"; transcript_id "RvY_13857.1"; Scaffold009 rebuild exon 1333976 1334098 . + . gene_id "RvY_13857"; transcript_id "RvY_13857.1"; Scaffold009 rebuild transcript 1334406 1335036 . - . gene_id "RvY_13858"; transcript_id "RvY_13858.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1334406 1334573 . - . gene_id "RvY_13858"; transcript_id "RvY_13858.1"; Scaffold009 rebuild exon 1334658 1334803 . - . gene_id "RvY_13858"; transcript_id "RvY_13858.1"; Scaffold009 rebuild exon 1334880 1335036 . - . gene_id "RvY_13858"; transcript_id "RvY_13858.1"; Scaffold009 rebuild transcript 1337317 1337864 . - . gene_id "RvY_13859"; transcript_id "RvY_13859.1"; gene_name "aden_kin_iso1"; annotation "hypothetical protein."; Pfam "[ADK] Adenylate kinase"; CDD "adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351."; Scaffold009 rebuild exon 1337317 1337388 . - . gene_id "RvY_13859"; transcript_id "RvY_13859.1"; Scaffold009 rebuild exon 1337466 1337657 . - . gene_id "RvY_13859"; transcript_id "RvY_13859.1"; Scaffold009 rebuild exon 1337748 1337864 . - . gene_id "RvY_13859"; transcript_id "RvY_13859.1"; Scaffold009 rebuild transcript 1338660 1339707 . - . gene_id "RvY_13860"; transcript_id "RvY_13860.1"; gene_name "FRQ1"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; CDD "Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]"; Scaffold009 rebuild exon 1338660 1338763 . - . gene_id "RvY_13860"; transcript_id "RvY_13860.1"; Scaffold009 rebuild exon 1338836 1339094 . - . gene_id "RvY_13860"; transcript_id "RvY_13860.1"; Scaffold009 rebuild exon 1339160 1339345 . - . gene_id "RvY_13860"; transcript_id "RvY_13860.1"; Scaffold009 rebuild exon 1339657 1339707 . - . gene_id "RvY_13860"; transcript_id "RvY_13860.1"; Scaffold009 rebuild transcript 1340130 1344434 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; annotation "hypothetical protein."; Pfam "[WWE]|[DDHD]"; similar_genes "S23IP_HUMAN(e-value:1.1e-16;bit-score:85.0)"; Scaffold009 rebuild exon 1340130 1340301 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1340467 1340648 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1341239 1341470 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1341591 1341784 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1341926 1342060 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1342131 1342240 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1342305 1342351 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1342433 1342616 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1342678 1342738 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1342856 1342961 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1343058 1343246 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1343338 1343407 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1343488 1343632 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1343704 1343809 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1343887 1344265 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild exon 1344329 1344434 . + . gene_id "RvY_13861"; transcript_id "RvY_13861.1"; Scaffold009 rebuild transcript 1344806 1345132 . - . gene_id "RvY_13862"; transcript_id "RvY_13862.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1344806 1344877 . - . gene_id "RvY_13862"; transcript_id "RvY_13862.1"; Scaffold009 rebuild exon 1345064 1345132 . - . gene_id "RvY_13862"; transcript_id "RvY_13862.1"; Scaffold009 rebuild transcript 1346259 1347549 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1346259 1346364 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild exon 1346443 1346517 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild exon 1346580 1346627 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild exon 1346939 1346993 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild exon 1347103 1347192 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild exon 1347334 1347397 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild exon 1347463 1347549 . + . gene_id "RvY_13863"; transcript_id "RvY_13863.1"; Scaffold009 rebuild transcript 1347584 1350267 . - . gene_id "RvY_13864"; transcript_id "RvY_13864.1"; gene_name "CwfJ_C_1"; annotation "CWF19-like protein 2"; Pfam "[CwfJ_C_2] Protein similar to CwfJ C-terminus 2|[CwfJ_C_1] Protein similar to CwfJ C-terminus 1"; CDD "Protein similar to CwfJ C-terminus 1. This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved in mRNA splicing."; similar_genes "C19L2_DANRE(e-value:3.2e-69;bit-score:259.0)"; Scaffold009 rebuild exon 1347584 1347835 . - . gene_id "RvY_13864"; transcript_id "RvY_13864.1"; Scaffold009 rebuild exon 1347924 1348318 . - . gene_id "RvY_13864"; transcript_id "RvY_13864.1"; Scaffold009 rebuild exon 1348620 1350267 . - . gene_id "RvY_13864"; transcript_id "RvY_13864.1"; Scaffold009 rebuild transcript 1351021 1351218 . - . gene_id "RvY_13865"; transcript_id "RvY_13865.1"; annotation "hypothetical protein."; Pfam "[DUF3695]"; Scaffold009 rebuild exon 1351021 1351218 . - . gene_id "RvY_13865"; transcript_id "RvY_13865.1"; Scaffold009 rebuild transcript 1352347 1354849 . + . gene_id "RvY_13866"; transcript_id "RvY_13866.1"; gene_name "NR_DBD_PNR_like_1"; annotation "hypothetical protein."; Pfam "[zf-C4] Zinc finger, C4 type (two domains)"; CDD "DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD)."; similar_genes "USP_CHOFU(e-value:5.1e-25;bit-score:112.0)"; Scaffold009 rebuild exon 1352347 1352380 . + . gene_id "RvY_13866"; transcript_id "RvY_13866.1"; Scaffold009 rebuild exon 1352754 1353080 . + . gene_id "RvY_13866"; transcript_id "RvY_13866.1"; Scaffold009 rebuild exon 1354209 1354849 . + . gene_id "RvY_13866"; transcript_id "RvY_13866.1"; Scaffold009 rebuild transcript 1355770 1358765 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; gene_name "KLHL20"; annotation "Kelch-like protein diablo"; Pfam "[Kelch_2] Kelch motif|[Kelch_3] Galactose oxidase, central domain|[BTB] BTB/POZ domain|[Kelch_5] Kelch motif|[BACK] BTB And C-terminal Kelch|[Kelch_6] Kelch motif|[Kelch_4] Galactose oxidase, central domain|[Kelch_1] Kelch motif"; KO "K10457"; similar_genes "KLHDB_DROPE(e-value:3.7e-157;bit-score:551.0)"; Scaffold009 rebuild exon 1355770 1355888 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1355961 1356030 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1356299 1356428 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1356504 1356583 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1356647 1356702 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1356780 1356924 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1357030 1357141 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1357235 1357415 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1357519 1357620 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1357689 1357857 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1357920 1357963 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1358035 1358420 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild exon 1358518 1358765 . - . gene_id "RvY_13867"; transcript_id "RvY_13867.1"; Scaffold009 rebuild transcript 1358887 1359642 . - . gene_id "RvY_13868"; transcript_id "RvY_13868.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1358887 1359087 . - . gene_id "RvY_13868"; transcript_id "RvY_13868.1"; Scaffold009 rebuild exon 1359565 1359642 . - . gene_id "RvY_13868"; transcript_id "RvY_13868.1"; Scaffold009 rebuild transcript 1361074 1361746 . - . gene_id "RvY_13869"; transcript_id "RvY_13869.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1361074 1361222 . - . gene_id "RvY_13869"; transcript_id "RvY_13869.1"; Scaffold009 rebuild exon 1361641 1361746 . - . gene_id "RvY_13869"; transcript_id "RvY_13869.1"; Scaffold009 rebuild transcript 1364917 1369281 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; gene_name "(2,3)SMC_prok_B"; annotation "(1)putative Cytospin-A-A(2,3)hypothetical protein."; Pfam "[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain"; CDD "(2,3)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; similar_genes "(1)CYTSA_DANRE(e-value:2.4e-31;bit-score:133.0)(2,3)CYTSB_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 1364917 1365915 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild exon 1366262 1366816 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild exon 1366981 1367337 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild exon 1367559 1367942 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild exon 1368103 1368423 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild exon 1368931 1369047 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild exon 1369129 1369281 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.1"; Scaffold009 rebuild transcript 1364917 1368441 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.2"; gene_name "(2,3)SMC_prok_B"; annotation "(1)putative Cytospin-A-A(2,3)hypothetical protein."; Pfam "[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain"; CDD "(2,3)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; similar_genes "(1)CYTSA_DANRE(e-value:2.4e-31;bit-score:133.0)(2,3)CYTSB_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 1364917 1365915 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.2"; Scaffold009 rebuild exon 1366262 1366816 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.2"; Scaffold009 rebuild exon 1366981 1367337 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.2"; Scaffold009 rebuild exon 1367559 1367942 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.2"; Scaffold009 rebuild exon 1368103 1368441 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.2"; Scaffold009 rebuild transcript 1364917 1367951 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.3"; gene_name "(2,3)SMC_prok_B"; annotation "(1)putative Cytospin-A-A(2,3)hypothetical protein."; Pfam "[CAMSAP_CH] CAMSAP CH domain|[CH] Calponin homology (CH) domain"; CDD "(2,3)chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; similar_genes "(1)CYTSA_DANRE(e-value:2.4e-31;bit-score:133.0)(2,3)CYTSB_HUMAN(e-value:2.2e-06;bit-score:50.0)"; Scaffold009 rebuild exon 1364917 1365915 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.3"; Scaffold009 rebuild exon 1366262 1366816 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.3"; Scaffold009 rebuild exon 1366981 1367337 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.3"; Scaffold009 rebuild exon 1367559 1367951 . + . gene_id "RvY_13870"; transcript_id "RvY_13870.3"; Scaffold009 rebuild transcript 1369339 1370428 . - . gene_id "RvY_13871"; transcript_id "RvY_13871.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1369339 1369373 . - . gene_id "RvY_13871"; transcript_id "RvY_13871.1"; Scaffold009 rebuild exon 1370311 1370428 . - . gene_id "RvY_13871"; transcript_id "RvY_13871.1"; Scaffold009 rebuild transcript 1370938 1380495 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; gene_name "(1)K00888"; annotation "(1)putative Phosphatidylinositol 4-kinase alpha(2)hypothetical protein."; Pfam "[PI3Ka] Phosphoinositide 3-kinase family, accessory domain (PIK domain)|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase"; CDD "(1)Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system."; EC "EC2.7.1.67"; KO "(1)K00888"; similar_genes "(1)PI4KA_HUMAN(e-value:7.4e-37;bit-score:152.0)(2)PI4KA_BOVIN(e-value:4.7e-13;bit-score:72.0)"; Scaffold009 rebuild exon 1370938 1371033 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1371102 1371293 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1371360 1371453 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1371526 1371702 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1371788 1372183 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1372283 1372638 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1372708 1372899 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1372969 1373167 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1373235 1373858 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1373945 1374332 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1374411 1374505 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1374580 1374860 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1374928 1375236 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1375314 1375572 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1375637 1375816 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1375886 1376380 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1376442 1376576 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1376653 1377239 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1377515 1377839 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1377906 1378192 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1378297 1378754 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild exon 1380270 1380495 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.1"; Scaffold009 rebuild transcript 1370938 1375419 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; gene_name "(1)K00888"; annotation "(1)putative Phosphatidylinositol 4-kinase alpha(2)hypothetical protein."; Pfam "[PI3Ka] Phosphoinositide 3-kinase family, accessory domain (PIK domain)|[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase"; CDD "(1)Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system."; EC "EC2.7.1.67"; KO "(1)K00888"; similar_genes "(1)PI4KA_HUMAN(e-value:7.4e-37;bit-score:152.0)(2)PI4KA_BOVIN(e-value:4.7e-13;bit-score:72.0)"; Scaffold009 rebuild exon 1370938 1371033 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1371102 1371293 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1371360 1371453 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1371526 1371702 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1371788 1372183 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1372283 1372638 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1372708 1372899 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1372969 1373167 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1373235 1373858 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1373945 1374332 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1374411 1374505 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1374580 1374860 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild exon 1374928 1375419 . + . gene_id "RvY_13872"; transcript_id "RvY_13872.2"; Scaffold009 rebuild transcript 1381256 1383094 . - . gene_id "RvY_13873"; transcript_id "RvY_13873.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1381256 1382142 . - . gene_id "RvY_13873"; transcript_id "RvY_13873.1"; Scaffold009 rebuild exon 1382227 1383094 . - . gene_id "RvY_13873"; transcript_id "RvY_13873.1"; Scaffold009 rebuild transcript 1383827 1386412 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; gene_name "K01431"; annotation "Beta-ureidopropionase"; Pfam "[CN_hydrolase] Carbon-nitrogen hydrolase"; CDD "mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily."; EC "EC3.5.1.6"; KO "K01431"; similar_genes "BUP1_RAT(e-value:4.6e-115;bit-score:411.0)"; Scaffold009 rebuild exon 1383827 1383936 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1384009 1384151 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1384213 1384335 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1384417 1384511 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1384577 1384661 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1384759 1384835 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1384911 1384965 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385059 1385085 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385217 1385304 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385408 1385455 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385558 1385591 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385666 1385708 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385776 1385802 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1385904 1385944 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1386072 1386158 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild exon 1386227 1386412 . + . gene_id "RvY_13874"; transcript_id "RvY_13874.1"; Scaffold009 rebuild transcript 1386764 1387207 . + . gene_id "RvY_13875"; transcript_id "RvY_13875.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1386764 1387207 . + . gene_id "RvY_13875"; transcript_id "RvY_13875.1"; Scaffold009 rebuild transcript 1388137 1390890 . + . gene_id "RvY_13876"; transcript_id "RvY_13876.1"; gene_name "B41"; annotation "hypothetical protein."; Pfam "[FERM_N] FERM N-terminal domain|[FERM_M] FERM central domain|[FERM_C] FERM C-terminal PH-like domain"; CDD "Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs."; similar_genes "E41L1_HUMAN(e-value:4.5e-09;bit-score:59.0)"; Scaffold009 rebuild exon 1388137 1388517 . + . gene_id "RvY_13876"; transcript_id "RvY_13876.1"; Scaffold009 rebuild exon 1389475 1390890 . + . gene_id "RvY_13876"; transcript_id "RvY_13876.1"; Scaffold009 rebuild transcript 1391102 1391422 . - . gene_id "RvY_13877"; transcript_id "RvY_13877.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1391102 1391422 . - . gene_id "RvY_13877"; transcript_id "RvY_13877.1"; Scaffold009 rebuild transcript 1392088 1394008 . - . gene_id "RvY_13878"; transcript_id "RvY_13878.1"; gene_name "PTZ00146"; annotation "hypothetical protein."; Pfam "[KH_1] KH domain"; CDD "fibrillarin; Provisional"; KO "K15516"; similar_genes "FMR1_HUMAN(e-value:7.0e-14;bit-score:75.0)"; Scaffold009 rebuild exon 1392088 1393269 . - . gene_id "RvY_13878"; transcript_id "RvY_13878.1"; Scaffold009 rebuild exon 1393520 1394008 . - . gene_id "RvY_13878"; transcript_id "RvY_13878.1"; Scaffold009 rebuild transcript 1395075 1395824 . + . gene_id "RvY_13879"; transcript_id "RvY_13879.1"; annotation "hypothetical protein."; Pfam "[Cgr1] Cgr1 family"; KO "K14822"; similar_genes "CCD86_BOVIN(e-value:1.3e-06;bit-score:51.0)"; Scaffold009 rebuild exon 1395075 1395223 . + . gene_id "RvY_13879"; transcript_id "RvY_13879.1"; Scaffold009 rebuild exon 1395437 1395566 . + . gene_id "RvY_13879"; transcript_id "RvY_13879.1"; Scaffold009 rebuild exon 1395684 1395824 . + . gene_id "RvY_13879"; transcript_id "RvY_13879.1"; Scaffold009 rebuild transcript 1396324 1398604 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; gene_name "ALDO"; annotation "Fructose-bisphosphate aldolase A"; Pfam "[Glycolytic] Fructose-bisphosphate aldolase class-I"; EC "EC4.1.2.13"; KO "K01623"; similar_genes "ALDOA_RABIT(e-value:1.5e-124;bit-score:443.0)"; Scaffold009 rebuild exon 1396324 1396419 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild exon 1396514 1396713 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild exon 1396783 1396957 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild exon 1397074 1397318 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild exon 1397398 1397676 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild exon 1397753 1397876 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild exon 1398590 1398604 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.1"; Scaffold009 rebuild transcript 1396324 1398604 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; gene_name "ALDO"; annotation "Fructose-bisphosphate aldolase A"; Pfam "[Glycolytic] Fructose-bisphosphate aldolase class-I"; EC "EC4.1.2.13"; KO "K01623"; similar_genes "ALDOA_RABIT(e-value:1.5e-124;bit-score:443.0)"; Scaffold009 rebuild exon 1396324 1396419 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild exon 1396514 1396713 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild exon 1396783 1396957 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild exon 1397074 1397318 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild exon 1397398 1397676 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild exon 1397753 1397873 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild exon 1398590 1398604 . - . gene_id "RvY_13880"; transcript_id "RvY_13880.2"; Scaffold009 rebuild transcript 1399136 1401704 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M28] Peptidase family M28"; similar_genes "NCLN_RAT(e-value:5.8e-07;bit-score:52.0)"; Scaffold009 rebuild exon 1399136 1399316 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1399374 1399564 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1399637 1399781 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1399914 1400159 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1400254 1400513 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1400598 1400681 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1400813 1400916 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1401001 1401118 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1401181 1401341 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1401399 1401531 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild exon 1401606 1401704 . + . gene_id "RvY_13881"; transcript_id "RvY_13881.1"; Scaffold009 rebuild transcript 1402020 1404337 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; gene_name "mmsA"; annotation "Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"; Pfam "[Aldedh] Aldehyde dehydrogenase family"; CDD "Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC"; EC "EC1.2.1.27"; KO "K00140"; similar_genes "MMSA_ANOGA(e-value:1.3e-227;bit-score:785.0)"; Scaffold009 rebuild exon 1402020 1402191 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1402268 1402370 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1402436 1402591 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1402674 1402935 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1403026 1403084 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1403147 1403435 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1403517 1403651 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1403731 1403898 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1403963 1404024 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild exon 1404154 1404337 . - . gene_id "RvY_13882"; transcript_id "RvY_13882.1"; Scaffold009 rebuild transcript 1404828 1406748 . + . gene_id "RvY_13883"; transcript_id "RvY_13883.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1404828 1405239 . + . gene_id "RvY_13883"; transcript_id "RvY_13883.1"; Scaffold009 rebuild exon 1405397 1405421 . + . gene_id "RvY_13883"; transcript_id "RvY_13883.1"; Scaffold009 rebuild exon 1405560 1406053 . + . gene_id "RvY_13883"; transcript_id "RvY_13883.1"; Scaffold009 rebuild exon 1406135 1406273 . + . gene_id "RvY_13883"; transcript_id "RvY_13883.1"; Scaffold009 rebuild exon 1406334 1406748 . + . gene_id "RvY_13883"; transcript_id "RvY_13883.1"; Scaffold009 rebuild transcript 1406946 1407146 . - . gene_id "RvY_13884"; transcript_id "RvY_13884.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1406946 1407146 . - . gene_id "RvY_13884"; transcript_id "RvY_13884.1"; Scaffold009 rebuild transcript 1407422 1407856 . + . gene_id "RvY_13885"; transcript_id "RvY_13885.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1407422 1407856 . + . gene_id "RvY_13885"; transcript_id "RvY_13885.1"; Scaffold009 rebuild transcript 1408295 1410107 . + . gene_id "RvY_13886"; transcript_id "RvY_13886.1"; gene_name "PTKc_PDGFR"; annotation "hypothetical protein."; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells"; EC "EC2.7.10.1"; similar_genes "FGFR1_DUGJA(e-value:1.0e-08;bit-score:58.0)"; Scaffold009 rebuild exon 1408295 1408376 . + . gene_id "RvY_13886"; transcript_id "RvY_13886.1"; Scaffold009 rebuild exon 1408560 1408766 . + . gene_id "RvY_13886"; transcript_id "RvY_13886.1"; Scaffold009 rebuild exon 1408838 1409053 . + . gene_id "RvY_13886"; transcript_id "RvY_13886.1"; Scaffold009 rebuild exon 1409185 1409494 . + . gene_id "RvY_13886"; transcript_id "RvY_13886.1"; Scaffold009 rebuild exon 1409630 1410107 . + . gene_id "RvY_13886"; transcript_id "RvY_13886.1"; Scaffold009 rebuild transcript 1410683 1411835 . + . gene_id "RvY_13887"; transcript_id "RvY_13887.1"; gene_name "VTA1"; annotation "putative Vacuolar protein sorting-associated protein VTA1 homolog"; Pfam "[DUF605] Vta1 like"; KO "K12199"; similar_genes "VTA1_BOVIN(e-value:1.3e-36;bit-score:151.0)"; Scaffold009 rebuild exon 1410683 1410936 . + . gene_id "RvY_13887"; transcript_id "RvY_13887.1"; Scaffold009 rebuild exon 1411044 1411217 . + . gene_id "RvY_13887"; transcript_id "RvY_13887.1"; Scaffold009 rebuild exon 1411286 1411835 . + . gene_id "RvY_13887"; transcript_id "RvY_13887.1"; Scaffold009 rebuild transcript 1412168 1413034 . - . gene_id "RvY_13888"; transcript_id "RvY_13888.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1412168 1412254 . - . gene_id "RvY_13888"; transcript_id "RvY_13888.1"; Scaffold009 rebuild exon 1412326 1412564 . - . gene_id "RvY_13888"; transcript_id "RvY_13888.1"; Scaffold009 rebuild exon 1412637 1412748 . - . gene_id "RvY_13888"; transcript_id "RvY_13888.1"; Scaffold009 rebuild exon 1412810 1413034 . - . gene_id "RvY_13888"; transcript_id "RvY_13888.1"; Scaffold009 rebuild transcript 1413035 1418543 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; annotation "hypothetical protein."; Pfam "[DUF3414]"; KO "K14310"; Scaffold009 rebuild exon 1413035 1413345 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1413430 1413716 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1413789 1413928 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1413999 1414333 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1414421 1414507 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1414597 1414834 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1414897 1415088 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1415256 1415707 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1415776 1416006 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1416083 1416211 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1416344 1416558 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1416634 1416826 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1416902 1416959 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1417020 1417169 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1417241 1417341 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1417419 1417524 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1417590 1417631 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1417697 1417879 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1417963 1418138 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1418213 1418363 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild exon 1418460 1418543 . - . gene_id "RvY_13889"; transcript_id "RvY_13889.1"; Scaffold009 rebuild transcript 1419013 1419368 . + . gene_id "RvY_13890"; transcript_id "RvY_13890.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1419013 1419177 . + . gene_id "RvY_13890"; transcript_id "RvY_13890.1"; Scaffold009 rebuild exon 1419243 1419368 . + . gene_id "RvY_13890"; transcript_id "RvY_13890.1"; Scaffold009 rebuild transcript 1419657 1419920 . - . gene_id "RvY_13891"; transcript_id "RvY_13891.1"; gene_name "UFM1"; annotation "putative Ubiquitin-fold modifier 1"; Pfam "[Ufm1] Ubiquitin fold modifier 1 protein"; CDD "Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1."; KO "K12162"; similar_genes "UFM1_DANRE(e-value:6.4e-36;bit-score:148.0)"; Scaffold009 rebuild exon 1419657 1419920 . - . gene_id "RvY_13891"; transcript_id "RvY_13891.1"; Scaffold009 rebuild transcript 1420665 1421781 . - . gene_id "RvY_13892"; transcript_id "RvY_13892.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1420665 1421296 . - . gene_id "RvY_13892"; transcript_id "RvY_13892.1"; Scaffold009 rebuild exon 1421412 1421781 . - . gene_id "RvY_13892"; transcript_id "RvY_13892.1"; Scaffold009 rebuild transcript 1422719 1423375 . + . gene_id "RvY_13893"; transcript_id "RvY_13893.1"; gene_name "LSM7"; annotation "U6 snRNA-associated Sm-like protein LSm7"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes."; KO "K12626"; similar_genes "LSM7_MOUSE(e-value:3.5e-11;bit-score:66.0)"; Scaffold009 rebuild exon 1422719 1422733 . + . gene_id "RvY_13893"; transcript_id "RvY_13893.1"; Scaffold009 rebuild exon 1422837 1423107 . + . gene_id "RvY_13893"; transcript_id "RvY_13893.1"; Scaffold009 rebuild exon 1423233 1423375 . + . gene_id "RvY_13893"; transcript_id "RvY_13893.1"; Scaffold009 rebuild transcript 1423839 1426744 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1423839 1424162 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1424250 1424424 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1424482 1424553 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1424612 1424686 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1424745 1424858 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1424930 1425465 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1425572 1425773 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1425847 1425951 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1426012 1426152 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1426243 1426283 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1426352 1426424 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild exon 1426482 1426744 . - . gene_id "RvY_13894"; transcript_id "RvY_13894.1"; Scaffold009 rebuild transcript 1427170 1427571 . + . gene_id "RvY_13895"; transcript_id "RvY_13895.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1427170 1427571 . + . gene_id "RvY_13895"; transcript_id "RvY_13895.1"; Scaffold009 rebuild transcript 1427599 1428872 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.1"; gene_name "RDH13"; annotation "retinol dehydrogenase 13 [EC:1.1.1.-]"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.1.1.-"; KO "K11161"; similar_genes "(1)RDH14_MOUSE(e-value:1.3e-08;bit-score:58.0)(2)RDH11_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold009 rebuild exon 1427599 1428198 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.1"; Scaffold009 rebuild exon 1428357 1428872 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.1"; Scaffold009 rebuild transcript 1427599 1428895 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.2"; gene_name "RDH13"; annotation "retinol dehydrogenase 13 [EC:1.1.1.-]"; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "short chain dehydrogenase; Provisional"; EC "EC1.1.1.-"; KO "K11161"; similar_genes "(1)RDH14_MOUSE(e-value:1.3e-08;bit-score:58.0)(2)RDH11_MOUSE(e-value:2.3e-10;bit-score:63.0)"; Scaffold009 rebuild exon 1427599 1428198 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.2"; Scaffold009 rebuild exon 1428357 1428673 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.2"; Scaffold009 rebuild exon 1428760 1428895 . - . gene_id "RvY_13896"; transcript_id "RvY_13896.2"; Scaffold009 rebuild transcript 1429344 1431085 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1429344 1429400 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1429460 1429835 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1429953 1430062 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1430145 1430262 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1430326 1430439 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1430511 1430571 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1430636 1430891 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild exon 1430960 1431085 . + . gene_id "RvY_13897"; transcript_id "RvY_13897.1"; Scaffold009 rebuild transcript 1431772 1434379 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold009 rebuild exon 1431772 1431891 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; Scaffold009 rebuild exon 1431999 1432175 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; Scaffold009 rebuild exon 1432235 1432357 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; Scaffold009 rebuild exon 1432474 1432638 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; Scaffold009 rebuild exon 1432766 1432875 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; Scaffold009 rebuild exon 1432951 1434379 . + . gene_id "RvY_13898"; transcript_id "RvY_13898.1"; Scaffold009 rebuild transcript 1434612 1437674 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; annotation "hypothetical protein."; Pfam "[TLD]"; Scaffold009 rebuild exon 1434612 1434663 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1434734 1434855 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1434961 1435118 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1435255 1435328 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1435417 1435542 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1435619 1435893 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1435958 1436128 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1436208 1436320 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1436382 1436694 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild exon 1437549 1437674 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.1"; Scaffold009 rebuild transcript 1434612 1436902 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; annotation "hypothetical protein."; Pfam "[TLD]"; Scaffold009 rebuild exon 1434612 1434663 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1434734 1434855 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1434961 1435118 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1435255 1435328 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1435417 1435542 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1435619 1435893 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1435958 1436128 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1436208 1436320 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1436382 1436694 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild exon 1436807 1436902 . - . gene_id "RvY_13899"; transcript_id "RvY_13899.2"; Scaffold009 rebuild transcript 1438676 1439383 . + . gene_id "RvY_13900"; transcript_id "RvY_13900.1"; annotation "hypothetical protein."; Pfam "[zf-HIT] HIT zinc finger"; Scaffold009 rebuild exon 1438676 1438749 . + . gene_id "RvY_13900"; transcript_id "RvY_13900.1"; Scaffold009 rebuild exon 1438836 1439113 . + . gene_id "RvY_13900"; transcript_id "RvY_13900.1"; Scaffold009 rebuild exon 1439199 1439383 . + . gene_id "RvY_13900"; transcript_id "RvY_13900.1"; Scaffold009 rebuild transcript 1439521 1440590 . - . gene_id "RvY_13901"; transcript_id "RvY_13901.1"; gene_name "GST_N_Omega"; annotation "hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_2] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain|[GST_C_2] Glutathione S-transferase, C-terminal domain"; CDD "GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold009 rebuild exon 1439521 1439762 . - . gene_id "RvY_13901"; transcript_id "RvY_13901.1"; Scaffold009 rebuild exon 1439852 1439957 . - . gene_id "RvY_13901"; transcript_id "RvY_13901.1"; Scaffold009 rebuild exon 1440029 1440257 . - . gene_id "RvY_13901"; transcript_id "RvY_13901.1"; Scaffold009 rebuild exon 1440354 1440459 . - . gene_id "RvY_13901"; transcript_id "RvY_13901.1"; Scaffold009 rebuild exon 1440551 1440590 . - . gene_id "RvY_13901"; transcript_id "RvY_13901.1"; Scaffold009 rebuild transcript 1442004 1442483 . + . gene_id "RvY_13902"; transcript_id "RvY_13902.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1442004 1442483 . + . gene_id "RvY_13902"; transcript_id "RvY_13902.1"; Scaffold009 rebuild transcript 1442101 1442580 . + . gene_id "RvY_13902"; transcript_id "RvY_13902.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1442101 1442580 . + . gene_id "RvY_13902"; transcript_id "RvY_13902.2"; Scaffold009 rebuild transcript 1443057 1443666 . - . gene_id "RvY_13903"; transcript_id "RvY_13903.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1443057 1443253 . - . gene_id "RvY_13903"; transcript_id "RvY_13903.1"; Scaffold009 rebuild exon 1443326 1443520 . - . gene_id "RvY_13903"; transcript_id "RvY_13903.1"; Scaffold009 rebuild exon 1443591 1443666 . - . gene_id "RvY_13903"; transcript_id "RvY_13903.1"; Scaffold009 rebuild transcript 1443712 1444111 . + . gene_id "RvY_13904"; transcript_id "RvY_13904.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1443712 1443797 . + . gene_id "RvY_13904"; transcript_id "RvY_13904.1"; Scaffold009 rebuild exon 1443997 1444111 . + . gene_id "RvY_13904"; transcript_id "RvY_13904.1"; Scaffold009 rebuild transcript 1444303 1446044 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; annotation "hypothetical protein."; Pfam "[Maelstrom] piRNA pathway germ-plasm component"; Scaffold009 rebuild exon 1444303 1444381 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild exon 1444467 1444529 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild exon 1444591 1444732 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild exon 1444841 1445098 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild exon 1445180 1445380 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild exon 1445489 1445849 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild exon 1445913 1446044 . - . gene_id "RvY_13905"; transcript_id "RvY_13905.1"; Scaffold009 rebuild transcript 1448007 1449399 . + . gene_id "RvY_13906"; transcript_id "RvY_13906.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1448007 1448092 . + . gene_id "RvY_13906"; transcript_id "RvY_13906.1"; Scaffold009 rebuild exon 1448697 1448827 . + . gene_id "RvY_13906"; transcript_id "RvY_13906.1"; Scaffold009 rebuild exon 1448919 1449002 . + . gene_id "RvY_13906"; transcript_id "RvY_13906.1"; Scaffold009 rebuild exon 1449185 1449300 . + . gene_id "RvY_13906"; transcript_id "RvY_13906.1"; Scaffold009 rebuild exon 1449394 1449399 . + . gene_id "RvY_13906"; transcript_id "RvY_13906.1"; Scaffold009 rebuild transcript 1449513 1449947 . + . gene_id "RvY_13907"; transcript_id "RvY_13907.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1449513 1449674 . + . gene_id "RvY_13907"; transcript_id "RvY_13907.1"; Scaffold009 rebuild exon 1449777 1449947 . + . gene_id "RvY_13907"; transcript_id "RvY_13907.1"; Scaffold009 rebuild transcript 1452031 1452393 . - . gene_id "RvY_13908"; transcript_id "RvY_13908.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1452031 1452393 . - . gene_id "RvY_13908"; transcript_id "RvY_13908.1"; Scaffold009 rebuild transcript 1452893 1453459 . + . gene_id "RvY_13909"; transcript_id "RvY_13909.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1452893 1452962 . + . gene_id "RvY_13909"; transcript_id "RvY_13909.1"; Scaffold009 rebuild exon 1453257 1453459 . + . gene_id "RvY_13909"; transcript_id "RvY_13909.1"; Scaffold009 rebuild transcript 1456256 1456885 . + . gene_id "RvY_13910"; transcript_id "RvY_13910.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1456256 1456885 . + . gene_id "RvY_13910"; transcript_id "RvY_13910.1"; Scaffold009 rebuild transcript 1456256 1457085 . + . gene_id "RvY_13910"; transcript_id "RvY_13910.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1456256 1456697 . + . gene_id "RvY_13910"; transcript_id "RvY_13910.2"; Scaffold009 rebuild exon 1456940 1457085 . + . gene_id "RvY_13910"; transcript_id "RvY_13910.2"; Scaffold009 rebuild transcript 1459428 1462861 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1459428 1459473 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild exon 1460303 1460669 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild exon 1460767 1461009 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild exon 1461091 1461281 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild exon 1461401 1461488 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild exon 1462543 1462605 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild exon 1462684 1462861 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.1"; Scaffold009 rebuild transcript 1460254 1462621 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1460254 1460669 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.2"; Scaffold009 rebuild exon 1460767 1461009 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.2"; Scaffold009 rebuild exon 1461091 1461281 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.2"; Scaffold009 rebuild exon 1461401 1461488 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.2"; Scaffold009 rebuild exon 1462543 1462621 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.2"; Scaffold009 rebuild transcript 1459428 1462621 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1459428 1459473 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; Scaffold009 rebuild exon 1460303 1460669 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; Scaffold009 rebuild exon 1460767 1461009 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; Scaffold009 rebuild exon 1461091 1461281 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; Scaffold009 rebuild exon 1461401 1461488 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; Scaffold009 rebuild exon 1462543 1462621 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.3"; Scaffold009 rebuild transcript 1461131 1463080 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.4"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1461131 1461281 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.4"; Scaffold009 rebuild exon 1461401 1461488 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.4"; Scaffold009 rebuild exon 1462543 1462605 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.4"; Scaffold009 rebuild exon 1462684 1462813 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.4"; Scaffold009 rebuild exon 1462880 1463080 . + . gene_id "RvY_13911"; transcript_id "RvY_13911.4"; Scaffold009 rebuild transcript 1460308 1460700 . - . gene_id "RvY_13912"; transcript_id "RvY_13912.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1460308 1460700 . - . gene_id "RvY_13912"; transcript_id "RvY_13912.1"; Scaffold009 rebuild transcript 1463247 1463940 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1463247 1463345 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.1"; Scaffold009 rebuild exon 1463426 1463508 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.1"; Scaffold009 rebuild exon 1463634 1463777 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.1"; Scaffold009 rebuild exon 1463856 1463940 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.1"; Scaffold009 rebuild transcript 1462996 1463453 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1462996 1463345 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.2"; Scaffold009 rebuild exon 1463426 1463453 . - . gene_id "RvY_13913"; transcript_id "RvY_13913.2"; Scaffold009 rebuild transcript 1464718 1465831 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1464718 1464846 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.1"; Scaffold009 rebuild exon 1465187 1465263 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.1"; Scaffold009 rebuild exon 1465392 1465428 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.1"; Scaffold009 rebuild exon 1465508 1465623 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.1"; Scaffold009 rebuild exon 1465768 1465831 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.1"; Scaffold009 rebuild transcript 1464497 1464838 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.2"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1464497 1464838 . - . gene_id "RvY_13914"; transcript_id "RvY_13914.2"; Scaffold009 rebuild transcript 1467708 1471853 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; gene_name "SET"; annotation "hypothetical protein."; Pfam "[SET]|[Pre-SET] Pre-SET motif"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; Scaffold009 rebuild exon 1467708 1467901 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1468003 1468140 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1469162 1469229 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1469319 1469447 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1469508 1469581 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1469646 1469688 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1470113 1470235 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1470294 1470427 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1470524 1470616 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1470710 1470869 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1470958 1471782 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild exon 1471852 1471853 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.1"; Scaffold009 rebuild transcript 1469079 1472034 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; gene_name "SET"; annotation "hypothetical protein."; Pfam "[SET]|[Pre-SET] Pre-SET motif"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; Scaffold009 rebuild exon 1469079 1469229 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1469319 1469447 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1469508 1469581 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1469646 1469688 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1470113 1470235 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1470294 1470427 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1470524 1470616 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1470710 1470869 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1470958 1471782 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1471852 1471953 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild exon 1472012 1472034 . - . gene_id "RvY_13915"; transcript_id "RvY_13915.2"; Scaffold009 rebuild transcript 1472960 1475689 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; gene_name "TUBB"; annotation "Tubulin beta-4 chain"; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Misat_Myo_SegII] Misato Segment II myosin-like domain|[Tubulin_C] Tubulin C-terminal domain"; CDD "The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins."; KO "K07375"; similar_genes "TBB4_HUMAN(e-value:5.5e-243;bit-score:836.0)"; Scaffold009 rebuild exon 1472960 1473028 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1473140 1473258 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1473322 1473464 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1473535 1473713 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1473772 1473879 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1473940 1474146 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1474262 1474506 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1474607 1474700 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1474771 1474790 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1474863 1474971 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1475512 1475544 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild exon 1475666 1475689 . - . gene_id "RvY_13916"; transcript_id "RvY_13916.1"; Scaffold009 rebuild transcript 1476366 1482384 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[SET]|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold009 rebuild exon 1476366 1476567 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1476724 1477188 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1477265 1477349 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1477441 1477618 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1477683 1477856 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1477977 1478294 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1478417 1478568 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1478633 1478812 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1478889 1479042 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1479265 1479387 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1479478 1479576 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1479637 1479854 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1479931 1480197 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1480274 1480766 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1480841 1481080 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1481153 1481604 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1481717 1481777 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1481859 1481929 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1482000 1482119 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild exon 1482177 1482384 . + . gene_id "RvY_13917"; transcript_id "RvY_13917.1"; Scaffold009 rebuild transcript 1483361 1487501 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; gene_name "PP2Ac"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[Metallophos] Calcineurin-like phosphoesterase|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; similar_genes "PP2BA_BOVIN(e-value:9.1e-12;bit-score:68.0)"; Scaffold009 rebuild exon 1483361 1483501 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1483593 1483655 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1483827 1484114 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1484217 1484330 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1484429 1484540 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1484612 1484770 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1484872 1485004 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1485096 1485577 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1485669 1485826 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1485896 1486005 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1486091 1486287 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1486478 1486715 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1486771 1487013 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1487123 1487300 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild exon 1487376 1487501 . + . gene_id "RvY_13918"; transcript_id "RvY_13918.1"; Scaffold009 rebuild transcript 1487695 1488961 . - . gene_id "RvY_13919"; transcript_id "RvY_13919.1"; gene_name "EFh"; annotation "hypothetical protein."; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 Scaffold009 rebuild exon 1487695 1488095 . - . gene_id "RvY_13919"; transcript_id "RvY_13919.1"; Scaffold009 rebuild exon 1488159 1488313 . - . gene_id "RvY_13919"; transcript_id "RvY_13919.1"; Scaffold009 rebuild exon 1488831 1488961 . - . gene_id "RvY_13919"; transcript_id "RvY_13919.1"; Scaffold009 rebuild transcript 1489081 1490904 . + . gene_id "RvY_13920"; transcript_id "RvY_13920.1"; gene_name "UST"; annotation "dermatan/chondrotin sulfate uronyl 2-O-sulfotransferase UST [EC:2.8.2.-]"; Pfam "[Sulfotransfer_2] Sulfotransferase family|[Gal-3-0_sulfotr] Galactose-3-O-sulfotransferase"; EC "EC2.8.2.-"; KO "K03193"; Scaffold009 rebuild exon 1489081 1489503 . + . gene_id "RvY_13920"; transcript_id "RvY_13920.1"; Scaffold009 rebuild exon 1489568 1489647 . + . gene_id "RvY_13920"; transcript_id "RvY_13920.1"; Scaffold009 rebuild exon 1489732 1489864 . + . gene_id "RvY_13920"; transcript_id "RvY_13920.1"; Scaffold009 rebuild exon 1490410 1490519 . + . gene_id "RvY_13920"; transcript_id "RvY_13920.1"; Scaffold009 rebuild exon 1490595 1490904 . + . gene_id "RvY_13920"; transcript_id "RvY_13920.1"; Scaffold009 rebuild transcript 1491243 1492534 . - . gene_id "RvY_13921"; transcript_id "RvY_13921.1"; gene_name "Porin3_VDAC"; annotation "hypothetical protein."; Pfam "[Porin_3] Eukaryotic porin"; CDD "Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies."; KO "K15040"; similar_genes "VDAC2_XENLA(e-value:3.9e-06;bit-score:49.0)"; Scaffold009 rebuild exon 1491243 1491597 . - . gene_id "RvY_13921"; transcript_id "RvY_13921.1"; Scaffold009 rebuild exon 1491818 1492247 . - . gene_id "RvY_13921"; transcript_id "RvY_13921.1"; Scaffold009 rebuild exon 1492322 1492364 . - . gene_id "RvY_13921"; transcript_id "RvY_13921.1"; Scaffold009 rebuild exon 1492460 1492534 . - . gene_id "RvY_13921"; transcript_id "RvY_13921.1"; Scaffold009 rebuild transcript 1493207 1496688 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; gene_name "APC2"; annotation "anaphase-promoting complex subunit 2"; Pfam "[Cullin] Cullin family|[APC2] Anaphase promoting complex (APC) subunit 2"; KO "K03349"; Scaffold009 rebuild exon 1493207 1493254 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild exon 1493321 1493771 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild exon 1493830 1494457 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild exon 1494528 1495084 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild exon 1495287 1495680 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild exon 1495745 1496231 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild exon 1496296 1496688 . + . gene_id "RvY_13922"; transcript_id "RvY_13922.1"; Scaffold009 rebuild transcript 1496986 1499046 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; gene_name "SWP1"; annotation "oligosaccharyltransferase complex subunit delta (ribophorin II)"; Pfam "[Ribophorin_II] Oligosaccharyltransferase subunit Ribophorin II"; KO "K12667"; Scaffold009 rebuild exon 1496986 1497010 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1497186 1497315 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1497522 1497597 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1497655 1497750 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1497816 1497899 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1498076 1498180 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1498275 1498358 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1498435 1498549 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1498655 1498722 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1498838 1498968 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild exon 1499031 1499046 . - . gene_id "RvY_13923"; transcript_id "RvY_13923.1"; Scaffold009 rebuild transcript 1501581 1504179 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; gene_name "K00654"; annotation "putative Serine palmitoyltransferase 1"; Pfam "[Aminotran_1_2] Aminotransferase class I and II"; CDD "7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]"; EC "EC2.3.1.50"; KO "K00654"; similar_genes "SPTC1_MOUSE(e-value:2.6e-41;bit-score:166.0)"; Scaffold009 rebuild exon 1501581 1501661 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1501748 1501909 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1502028 1502137 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1502233 1502326 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1502398 1502470 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1502565 1502697 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1502808 1502976 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1503052 1503249 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1503326 1503518 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1503581 1503635 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1503701 1503818 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1503891 1503964 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild exon 1504086 1504179 . + . gene_id "RvY_13924"; transcript_id "RvY_13924.1"; Scaffold009 rebuild transcript 1504602 1505730 . - . gene_id "RvY_13925"; transcript_id "RvY_13925.1"; annotation "hypothetical protein."; Pfam "[Miff] Mitochondrial and peroxisomal fission factor Mff"; Scaffold009 rebuild exon 1504602 1504818 . - . gene_id "RvY_13925"; transcript_id "RvY_13925.1"; Scaffold009 rebuild exon 1504874 1505156 . - . gene_id "RvY_13925"; transcript_id "RvY_13925.1"; Scaffold009 rebuild exon 1505254 1505374 . - . gene_id "RvY_13925"; transcript_id "RvY_13925.1"; Scaffold009 rebuild exon 1505464 1505730 . - . gene_id "RvY_13925"; transcript_id "RvY_13925.1"; Scaffold009 rebuild transcript 1507865 1509583 . + . gene_id "RvY_13926"; transcript_id "RvY_13926.1"; gene_name "IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold009 rebuild exon 1507865 1508461 . + . gene_id "RvY_13926"; transcript_id "RvY_13926.1"; Scaffold009 rebuild exon 1508568 1508655 . + . gene_id "RvY_13926"; transcript_id "RvY_13926.1"; Scaffold009 rebuild exon 1508857 1509230 . + . gene_id "RvY_13926"; transcript_id "RvY_13926.1"; Scaffold009 rebuild exon 1509293 1509326 . + . gene_id "RvY_13926"; transcript_id "RvY_13926.1"; Scaffold009 rebuild exon 1509390 1509583 . + . gene_id "RvY_13926"; transcript_id "RvY_13926.1"; Scaffold009 rebuild transcript 1510576 1511641 . + . gene_id "RvY_13927"; transcript_id "RvY_13927.1"; gene_name "K00670"; annotation "putative N-acetyltransferase MAK3 homolog"; Pfam "[Acetyltransf_10] Acetyltransferase (GNAT) domain|[Acetyltransf_7] Acetyltransferase (GNAT) domain|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "Acetyltransferases [General function prediction only]"; EC "EC2.3.1.-|EC2.3.1.88"; KO "K00670"; similar_genes "MAK3_DROME(e-value:7.7e-26;bit-score:115.0)"; Scaffold009 rebuild exon 1510576 1510968 . + . gene_id "RvY_13927"; transcript_id "RvY_13927.1"; Scaffold009 rebuild exon 1511060 1511204 . + . gene_id "RvY_13927"; transcript_id "RvY_13927.1"; Scaffold009 rebuild exon 1511271 1511326 . + . gene_id "RvY_13927"; transcript_id "RvY_13927.1"; Scaffold009 rebuild exon 1511405 1511641 . + . gene_id "RvY_13927"; transcript_id "RvY_13927.1"; Scaffold009 rebuild transcript 1511685 1512807 . - . gene_id "RvY_13928"; transcript_id "RvY_13928.1"; gene_name "GST_N_Sigma_like"; annotation "hypothetical protein."; Pfam "[GST_C] Glutathione S-transferase, C-terminal domain|[GST_N] Glutathione S-transferase, N-terminal domain|[GST_N_3] Glutathione S-transferase, N-terminal domain"; CDD "GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an Scaffold009 rebuild exon 1511685 1511858 . - . gene_id "RvY_13928"; transcript_id "RvY_13928.1"; Scaffold009 rebuild exon 1511978 1512204 . - . gene_id "RvY_13928"; transcript_id "RvY_13928.1"; Scaffold009 rebuild exon 1512270 1512452 . - . gene_id "RvY_13928"; transcript_id "RvY_13928.1"; Scaffold009 rebuild exon 1512516 1512807 . - . gene_id "RvY_13928"; transcript_id "RvY_13928.1"; Scaffold009 rebuild transcript 1513683 1514794 . - . gene_id "RvY_13929"; transcript_id "RvY_13929.1"; gene_name "MPV17"; annotation "protein Mpv17"; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; KO "K13348"; Scaffold009 rebuild exon 1513683 1513788 . - . gene_id "RvY_13929"; transcript_id "RvY_13929.1"; Scaffold009 rebuild exon 1513857 1513989 . - . gene_id "RvY_13929"; transcript_id "RvY_13929.1"; Scaffold009 rebuild exon 1514069 1514320 . - . gene_id "RvY_13929"; transcript_id "RvY_13929.1"; Scaffold009 rebuild exon 1514419 1514574 . - . gene_id "RvY_13929"; transcript_id "RvY_13929.1"; Scaffold009 rebuild exon 1514707 1514794 . - . gene_id "RvY_13929"; transcript_id "RvY_13929.1"; Scaffold009 rebuild transcript 1515534 1516528 . + . gene_id "RvY_13930"; transcript_id "RvY_13930.1"; annotation "hypothetical protein."; Pfam "[DUF1075]"; Scaffold009 rebuild exon 1515534 1515675 . + . gene_id "RvY_13930"; transcript_id "RvY_13930.1"; Scaffold009 rebuild exon 1515832 1515910 . + . gene_id "RvY_13930"; transcript_id "RvY_13930.1"; Scaffold009 rebuild exon 1516016 1516123 . + . gene_id "RvY_13930"; transcript_id "RvY_13930.1"; Scaffold009 rebuild exon 1516444 1516528 . + . gene_id "RvY_13930"; transcript_id "RvY_13930.1"; Scaffold009 rebuild transcript 1517073 1517433 . + . gene_id "RvY_13931"; transcript_id "RvY_13931.1"; annotation "hypothetical protein."; Pfam "[GFRP] GTP cyclohydrolase I feedback regulatory protein (GFRP)"; similar_genes "GFRP_XENTR(e-value:6.4e-19;bit-score:92.0)"; Scaffold009 rebuild exon 1517073 1517279 . + . gene_id "RvY_13931"; transcript_id "RvY_13931.1"; Scaffold009 rebuild exon 1517365 1517433 . + . gene_id "RvY_13931"; transcript_id "RvY_13931.1"; Scaffold009 rebuild transcript 1517600 1518451 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.1"; annotation "hypothetical protein."; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; Scaffold009 rebuild exon 1517600 1518451 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.1"; Scaffold009 rebuild transcript 1517600 1518440 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.2"; annotation "hypothetical protein."; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; Scaffold009 rebuild exon 1517600 1518247 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.2"; Scaffold009 rebuild exon 1518333 1518440 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.2"; Scaffold009 rebuild transcript 1517600 1518440 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.3"; annotation "hypothetical protein."; Pfam "[Mpv17_PMP22] Mpv17 / PMP22 family"; Scaffold009 rebuild exon 1517600 1518247 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.3"; Scaffold009 rebuild exon 1518336 1518440 . + . gene_id "RvY_13932"; transcript_id "RvY_13932.3"; Scaffold009 rebuild transcript 1518683 1519977 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; gene_name "maf"; annotation "septum formation protein"; Pfam "[Maf] Maf-like protein"; CDD "Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins."; KO "K06287"; similar_genes "Y1188_THET8(e-value:6.8e-10;bit-score:62.0)"; Scaffold009 rebuild exon 1518683 1518827 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild exon 1518908 1519034 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild exon 1519119 1519192 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild exon 1519321 1519399 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild exon 1519526 1519562 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild exon 1519629 1519808 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild exon 1519882 1519977 . - . gene_id "RvY_13933"; transcript_id "RvY_13933.1"; Scaffold009 rebuild transcript 1520995 1521240 . - . gene_id "RvY_13934"; transcript_id "RvY_13934.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1520995 1521240 . - . gene_id "RvY_13934"; transcript_id "RvY_13934.1"; Scaffold009 rebuild transcript 1521393 1521689 . - . gene_id "RvY_13935"; transcript_id "RvY_13935.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1521393 1521689 . - . gene_id "RvY_13935"; transcript_id "RvY_13935.1"; Scaffold009 rebuild transcript 1522251 1524455 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; annotation "Fatty-acid amide hydrolase 2"; Pfam "[Amidase]"; EC "EC3.5.1.n2"; similar_genes "FAAH2_HUMAN(e-value:7.4e-56;bit-score:215.0)"; Scaffold009 rebuild exon 1522251 1522334 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1522412 1522476 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1522535 1523108 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1523233 1523312 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1523393 1523530 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1523612 1523746 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1523829 1523954 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild exon 1524032 1524455 . - . gene_id "RvY_13936"; transcript_id "RvY_13936.1"; Scaffold009 rebuild transcript 1524900 1526908 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; gene_name "NDUFA9"; annotation "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 [EC:1.6.5.3 1.6.99.3]"; Pfam "[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|[NAD_binding_10] NADH(P)-binding|[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family"; CDD "Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03953"; similar_genes "NDUA9_RAT(e-value:9.7e-20;bit-score:95.0)"; Scaffold009 rebuild exon 1524900 1524915 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1525040 1525330 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1525426 1525615 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1525692 1525854 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1525936 1526112 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1526180 1526256 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1526325 1526432 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1526508 1526716 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild exon 1526793 1526908 . + . gene_id "RvY_13937"; transcript_id "RvY_13937.1"; Scaffold009 rebuild transcript 1527210 1527863 . - . gene_id "RvY_13938"; transcript_id "RvY_13938.1"; gene_name "(1)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold009 rebuild exon 1527210 1527863 . - . gene_id "RvY_13938"; transcript_id "RvY_13938.1"; Scaffold009 rebuild transcript 1527731 1528108 . - . gene_id "RvY_13938"; transcript_id "RvY_13938.2"; gene_name "(1)ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "(1)ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; Scaffold009 rebuild exon 1527731 1528108 . - . gene_id "RvY_13938"; transcript_id "RvY_13938.2"; Scaffold009 rebuild transcript 1528343 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; annotation "hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; Scaffold009 rebuild exon 1528343 1528410 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1528504 1528684 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1528744 1528902 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1528989 1529083 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1529152 1529268 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1529331 1529467 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1529551 1529596 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1529681 1529774 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1529845 1529887 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1530252 1530314 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1530455 1530531 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1530605 1530925 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1530996 1531078 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1531160 1531243 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild exon 1531324 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.1"; Scaffold009 rebuild transcript 1528687 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; annotation "hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; Scaffold009 rebuild exon 1528687 1528902 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1528989 1529083 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1529152 1529268 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1529331 1529467 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1529551 1529596 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1529681 1529774 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1529845 1529887 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1530252 1530314 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1530455 1530531 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1530605 1530925 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1530996 1531078 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1531160 1531243 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild exon 1531324 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.2"; Scaffold009 rebuild transcript 1529368 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; annotation "hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; Scaffold009 rebuild exon 1529368 1529467 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1529551 1529596 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1529678 1529774 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1529845 1529887 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1530252 1530314 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1530455 1530531 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1530605 1530925 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1530996 1531078 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1531160 1531243 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild exon 1531324 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.3"; Scaffold009 rebuild transcript 1529589 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; annotation "hypothetical protein."; Pfam "[B9-C2] Ciliary basal body-associated, B9 protein"; Scaffold009 rebuild exon 1529589 1529596 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1529681 1529774 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1529845 1529887 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1530252 1530314 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1530455 1530531 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1530605 1530925 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1530996 1531078 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1531160 1531243 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild exon 1531324 1531423 . + . gene_id "RvY_13939"; transcript_id "RvY_13939.4"; Scaffold009 rebuild transcript 1531599 1531946 . - . gene_id "RvY_13940"; transcript_id "RvY_13940.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1531599 1531946 . - . gene_id "RvY_13940"; transcript_id "RvY_13940.1"; Scaffold009 rebuild transcript 1532378 1532832 . + . gene_id "RvY_13941"; transcript_id "RvY_13941.1"; gene_name "CKS1"; annotation "putative Cyclin-dependent kinases regulatory subunit 2"; Pfam "[CKS] Cyclin-dependent kinase regulatory subunit"; KO "K02219"; similar_genes "CKS2_XENLA(e-value:2.3e-27;bit-score:120.0)"; Scaffold009 rebuild exon 1532378 1532436 . + . gene_id "RvY_13941"; transcript_id "RvY_13941.1"; Scaffold009 rebuild exon 1532504 1532631 . + . gene_id "RvY_13941"; transcript_id "RvY_13941.1"; Scaffold009 rebuild exon 1532693 1532832 . + . gene_id "RvY_13941"; transcript_id "RvY_13941.1"; Scaffold009 rebuild transcript 1533222 1535333 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; gene_name "HEX"; annotation "putative Beta-hexosaminidase subunit alpha"; Pfam "[Glyco_hydro_20b] Glycosyl hydrolase family 20, domain 2|[Glyco_hydro_20] Glycosyl hydrolase family 20, catalytic domain"; CDD "Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in Tay-Sachs, mutations in the beta-subunit cause in a deficiency in both HexA and HexB enzymes and result in Sandhoff disease. In both disorders GM(2) gangliosides accumulate in lysosomes. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself."; EC "EC3.2.1.52"; KO "K12373"; similar_genes "HEXA_BOVIN(e-value:7.1e-50;bit-score:195.0)"; Scaffold009 rebuild exon 1533222 1533730 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; Scaffold009 rebuild exon 1533812 1533973 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; Scaffold009 rebuild exon 1534049 1534790 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; Scaffold009 rebuild exon 1534857 1534941 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; Scaffold009 rebuild exon 1535051 1535177 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; Scaffold009 rebuild exon 1535255 1535333 . + . gene_id "RvY_13942"; transcript_id "RvY_13942.1"; Scaffold009 rebuild transcript 1535603 1543419 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; annotation "Cullin-associated NEDD8-dissociated protein 1"; Pfam "[TIP120] TATA-binding protein interacting (TIP20)|[Arm] Armadillo/beta-catenin-like repeat|[CLASP_N] CLASP N terminal|[HEAT_2] HEAT repeats|[Vac14_Fab1_bd] Vacuolar 14 Fab1-binding region|[HEAT_EZ] HEAT-like repeat|[HEAT] HEAT repeat"; similar_genes "CAND1_RAT(e-value:1.2e-51;bit-score:201.0)"; Scaffold009 rebuild exon 1535603 1535724 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1536017 1536407 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1536530 1536718 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1536797 1536989 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1538032 1538203 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1538410 1538507 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1538579 1538808 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1538899 1539105 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1539397 1539482 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1539557 1539656 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1539859 1540024 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1540142 1540259 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1540440 1540533 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1540619 1540730 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1540797 1540982 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1541246 1541372 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1541575 1541729 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1541830 1541912 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1541990 1542152 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1542215 1542344 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1542437 1542602 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1542668 1542774 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1542861 1542982 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1543076 1543143 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1543211 1543312 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild exon 1543378 1543419 . - . gene_id "RvY_13943"; transcript_id "RvY_13943.1"; Scaffold009 rebuild transcript 1546855 1548297 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; gene_name "S_TKc"; annotation "putative Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.12.1"; similar_genes "MBK2_CAEEL(e-value:1.6e-30;bit-score:130.0)"; Scaffold009 rebuild exon 1546855 1547110 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; Scaffold009 rebuild exon 1547187 1547316 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; Scaffold009 rebuild exon 1547624 1547657 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; Scaffold009 rebuild exon 1547726 1547842 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; Scaffold009 rebuild exon 1547919 1548057 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; Scaffold009 rebuild exon 1548134 1548297 . - . gene_id "RvY_13944"; transcript_id "RvY_13944.1"; Scaffold009 rebuild transcript 1548531 1549483 . - . gene_id "RvY_13945"; transcript_id "RvY_13945.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1548531 1548560 . - . gene_id "RvY_13945"; transcript_id "RvY_13945.1"; Scaffold009 rebuild exon 1548636 1548796 . - . gene_id "RvY_13945"; transcript_id "RvY_13945.1"; Scaffold009 rebuild exon 1548855 1549161 . - . gene_id "RvY_13945"; transcript_id "RvY_13945.1"; Scaffold009 rebuild exon 1549229 1549324 . - . gene_id "RvY_13945"; transcript_id "RvY_13945.1"; Scaffold009 rebuild exon 1549397 1549483 . - . gene_id "RvY_13945"; transcript_id "RvY_13945.1"; Scaffold009 rebuild transcript 1549825 1553106 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; gene_name "SrmB"; annotation "ATP-dependent RNA helicase DDX54"; Pfam "[DBP10CT] DBP10CT (NUC160) domain|[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K14808"; similar_genes "DDX54_HUMAN(e-value:1.8e-150;bit-score:529.0)"; Scaffold009 rebuild exon 1549825 1550033 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1550106 1550341 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1550412 1550519 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1550595 1550725 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1550806 1550988 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1551059 1551492 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1551562 1551772 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1551885 1552016 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1552077 1552637 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1552702 1552772 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild exon 1552968 1553106 . - . gene_id "RvY_13946"; transcript_id "RvY_13946.1"; Scaffold009 rebuild transcript 1553545 1556765 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; annotation "putative mRNA-capping enzyme"; Pfam "[mRNA_cap_enzyme] mRNA capping enzyme, catalytic domain|[DSPc] Dual specificity phosphatase, catalytic domain|[mRNA_cap_C] mRNA capping enzyme, C-terminal domain"; EC "EC3.1.3.33"; KO "K13917"; similar_genes "MCE1_MOUSE(e-value:6.9e-29;bit-score:125.0)"; Scaffold009 rebuild exon 1553545 1553656 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1553757 1553866 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1553934 1554126 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1554193 1554268 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1554349 1554429 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1554518 1554576 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1554653 1554753 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1554879 1554985 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1555041 1555142 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1555205 1555418 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1555488 1555682 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1555799 1555870 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1556001 1556101 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1556198 1556264 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1556365 1556494 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild exon 1556563 1556765 . + . gene_id "RvY_13947"; transcript_id "RvY_13947.1"; Scaffold009 rebuild transcript 1557104 1558621 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; gene_name "UAA"; annotation "GDP-fucose transporter"; Pfam "[UAA] UAA transporter family|[TPT] Triose-phosphate Transporter family|[EamA] EamA-like transporter family"; CDD "UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine."; KO "K15279"; similar_genes "FUCT1_CAEEL(e-value:4.4e-94;bit-score:342.0)"; Scaffold009 rebuild exon 1557104 1557382 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild exon 1557452 1557516 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild exon 1557580 1557916 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild exon 1558005 1558121 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild exon 1558189 1558329 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild exon 1558412 1558472 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild exon 1558557 1558621 . - . gene_id "RvY_13948"; transcript_id "RvY_13948.1"; Scaffold009 rebuild transcript 1559744 1562120 . + . gene_id "RvY_13949"; transcript_id "RvY_13949.1"; gene_name "PRMT5"; annotation "protein arginine N-methyltransferase 5 [EC:2.1.1.125]"; Pfam "[PRMT5] PRMT5 arginine-N-methyltransferase"; EC "EC2.1.1.-|EC2.1.1.125"; KO "K02516"; similar_genes "ANM5_HUMAN(e-value:1.2e-15;bit-score:81.0)"; Scaffold009 rebuild exon 1559744 1560207 . + . gene_id "RvY_13949"; transcript_id "RvY_13949.1"; Scaffold009 rebuild exon 1560395 1560981 . + . gene_id "RvY_13949"; transcript_id "RvY_13949.1"; Scaffold009 rebuild exon 1561182 1561712 . + . gene_id "RvY_13949"; transcript_id "RvY_13949.1"; Scaffold009 rebuild exon 1561780 1562120 . + . gene_id "RvY_13949"; transcript_id "RvY_13949.1"; Scaffold009 rebuild transcript 1564887 1567958 . - . gene_id "RvY_13950"; transcript_id "RvY_13950.1"; gene_name "YWHA"; annotation "14-3-3 protein zeta"; Pfam "[14-3-3] 14-3-3 protein"; KO "K06630"; similar_genes "1433Z_BOMMO(e-value:3.2e-120;bit-score:428.0)"; Scaffold009 rebuild exon 1564887 1564946 . - . gene_id "RvY_13950"; transcript_id "RvY_13950.1"; Scaffold009 rebuild exon 1565158 1565253 . - . gene_id "RvY_13950"; transcript_id "RvY_13950.1"; Scaffold009 rebuild exon 1565374 1565537 . - . gene_id "RvY_13950"; transcript_id "RvY_13950.1"; Scaffold009 rebuild exon 1566493 1566616 . - . gene_id "RvY_13950"; transcript_id "RvY_13950.1"; Scaffold009 rebuild exon 1567665 1567958 . - . gene_id "RvY_13950"; transcript_id "RvY_13950.1"; Scaffold009 rebuild transcript 1569604 1570697 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; gene_name "Ribosomal_P0_like"; annotation "hypothetical protein."; Pfam "[Ribosomal_L10] Ribosomal protein L10"; CDD "Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2."; KO "K14815"; similar_genes "MRT4_BOVIN(e-value:1.1e-22;bit-score:104.0)"; Scaffold009 rebuild exon 1569604 1569631 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; Scaffold009 rebuild exon 1569713 1569771 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; Scaffold009 rebuild exon 1569833 1569936 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; Scaffold009 rebuild exon 1570007 1570156 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; Scaffold009 rebuild exon 1570233 1570461 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; Scaffold009 rebuild exon 1570527 1570697 . + . gene_id "RvY_13951"; transcript_id "RvY_13951.1"; Scaffold009 rebuild transcript 1570985 1573183 . - . gene_id "RvY_13952"; transcript_id "RvY_13952.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1570985 1571512 . - . gene_id "RvY_13952"; transcript_id "RvY_13952.1"; Scaffold009 rebuild exon 1571573 1572246 . - . gene_id "RvY_13952"; transcript_id "RvY_13952.1"; Scaffold009 rebuild exon 1572308 1572455 . - . gene_id "RvY_13952"; transcript_id "RvY_13952.1"; Scaffold009 rebuild exon 1572536 1573183 . - . gene_id "RvY_13952"; transcript_id "RvY_13952.1"; Scaffold009 rebuild transcript 1576737 1578034 . - . gene_id "RvY_13953"; transcript_id "RvY_13953.1"; gene_name "LamG"; annotation "hypothetical protein."; Pfam "[Laminin_G_2] Laminin G domain|[Laminin_G_1] Laminin G domain"; CDD "Laminin G domain."; Scaffold009 rebuild exon 1576737 1576903 . - . gene_id "RvY_13953"; transcript_id "RvY_13953.1"; Scaffold009 rebuild exon 1576996 1577739 . - . gene_id "RvY_13953"; transcript_id "RvY_13953.1"; Scaffold009 rebuild exon 1577848 1578034 . - . gene_id "RvY_13953"; transcript_id "RvY_13953.1"; Scaffold009 rebuild transcript 1579180 1582973 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; annotation "hypothetical protein."; Pfam "[EGF_2] EGF-like domain|[EGF] EGF-like domain"; Scaffold009 rebuild exon 1579180 1579247 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1579343 1579488 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1579573 1579872 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1579934 1581062 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1581158 1581277 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1581357 1581488 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1581570 1581827 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1581920 1582024 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1582091 1582268 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1582405 1582586 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild exon 1582682 1582973 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.1"; Scaffold009 rebuild transcript 1579548 1582853 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; annotation "hypothetical protein."; Pfam "[EGF_2] EGF-like domain|[EGF] EGF-like domain"; Scaffold009 rebuild exon 1579548 1579872 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1579934 1581062 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1581158 1581277 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1581357 1581488 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1581570 1581827 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1581920 1582024 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1582091 1582268 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1582405 1582586 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild exon 1582682 1582853 . - . gene_id "RvY_13954"; transcript_id "RvY_13954.2"; Scaffold009 rebuild transcript 1584187 1584723 . - . gene_id "RvY_13955"; transcript_id "RvY_13955.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1584187 1584723 . - . gene_id "RvY_13955"; transcript_id "RvY_13955.1"; Scaffold009 rebuild transcript 1585536 1586198 . - . gene_id "RvY_13956"; transcript_id "RvY_13956.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1585536 1585807 . - . gene_id "RvY_13956"; transcript_id "RvY_13956.1"; Scaffold009 rebuild exon 1585958 1586198 . - . gene_id "RvY_13956"; transcript_id "RvY_13956.1"; Scaffold009 rebuild transcript 1586447 1586986 . - . gene_id "RvY_13957"; transcript_id "RvY_13957.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1586447 1586986 . - . gene_id "RvY_13957"; transcript_id "RvY_13957.1"; Scaffold009 rebuild transcript 1587003 1587233 . - . gene_id "RvY_13958"; transcript_id "RvY_13958.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1587003 1587233 . - . gene_id "RvY_13958"; transcript_id "RvY_13958.1"; Scaffold009 rebuild transcript 1587938 1588603 . + . gene_id "RvY_13959"; transcript_id "RvY_13959.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1587938 1588112 . + . gene_id "RvY_13959"; transcript_id "RvY_13959.1"; Scaffold009 rebuild exon 1588341 1588603 . + . gene_id "RvY_13959"; transcript_id "RvY_13959.1"; Scaffold009 rebuild transcript 1588887 1589906 . - . gene_id "RvY_13960"; transcript_id "RvY_13960.1"; gene_name "SETMAR"; annotation "histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43]"; Pfam "[Transposase_1] Transposase (partial DDE domain)|[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; KO "K11433"; similar_genes "SETMR_HUMAN(e-value:2.2e-19;bit-score:93.0)"; Scaffold009 rebuild exon 1588887 1589906 . - . gene_id "RvY_13960"; transcript_id "RvY_13960.1"; Scaffold009 rebuild transcript 1590265 1591162 . + . gene_id "RvY_13961"; transcript_id "RvY_13961.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1590265 1590267 . + . gene_id "RvY_13961"; transcript_id "RvY_13961.1"; Scaffold009 rebuild exon 1590289 1590510 . + . gene_id "RvY_13961"; transcript_id "RvY_13961.1"; Scaffold009 rebuild exon 1590572 1591162 . + . gene_id "RvY_13961"; transcript_id "RvY_13961.1"; Scaffold009 rebuild transcript 1592225 1599568 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; gene_name "MYST4"; annotation "Histone acetyltransferase MYST4"; Pfam "[MOZ_SAS] MOZ/SAS family"; CDD "Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]"; EC "EC2.3.1.48"; KO "K11306"; similar_genes "MYST4_MOUSE(e-value:1.2e-51;bit-score:201.0)"; Scaffold009 rebuild exon 1592225 1592715 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1592821 1592977 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1593064 1593956 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1594191 1594636 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1594720 1594829 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1594913 1595098 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1595158 1595421 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1595487 1595580 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1595658 1595813 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1595909 1596198 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1596258 1596302 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1596767 1597054 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1597125 1597259 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1597319 1597469 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1597564 1598100 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1598170 1598536 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1598599 1598963 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1599037 1599345 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild exon 1599417 1599568 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.1"; Scaffold009 rebuild transcript 1592225 1596395 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; gene_name "MYST4"; annotation "Histone acetyltransferase MYST4"; Pfam "[MOZ_SAS] MOZ/SAS family"; CDD "Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]"; EC "EC2.3.1.48"; KO "K11306"; similar_genes "MYST4_MOUSE(e-value:1.2e-51;bit-score:201.0)"; Scaffold009 rebuild exon 1592225 1592715 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1592821 1592977 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1593064 1593956 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1594191 1594636 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1594720 1594829 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1594913 1595098 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1595158 1595421 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1595487 1595580 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1595658 1595813 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1595909 1596198 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1596258 1596302 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild exon 1596378 1596395 . + . gene_id "RvY_13962"; transcript_id "RvY_13962.2"; Scaffold009 rebuild transcript 1600619 1608278 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; gene_name "DGK"; annotation "diacylglycerol kinase [EC:2.7.1.107]"; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[DAGK_cat] Diacylglycerol kinase catalytic domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[DAGK_acc] Diacylglycerol kinase accessory domain"; CDD "Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known."; EC "EC2.7.1.107"; KO "K00901"; similar_genes "DGKQ_HUMAN(e-value:2.0e-24;bit-score:110.0)"; Scaffold009 rebuild exon 1600619 1600702 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1600827 1600925 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1600999 1601164 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1601244 1601411 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1601504 1601707 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1601794 1601902 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1601978 1602281 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1602362 1602519 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1602609 1602821 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1602905 1603047 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1603236 1603447 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1603519 1603817 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1603903 1604143 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1604435 1604655 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1604736 1604838 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1607669 1607748 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild exon 1608041 1608278 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.1"; Scaffold009 rebuild transcript 1600567 1608278 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; gene_name "DGK"; annotation "diacylglycerol kinase [EC:2.7.1.107]"; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[DAGK_cat] Diacylglycerol kinase catalytic domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[DAGK_acc] Diacylglycerol kinase accessory domain"; CDD "Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known."; EC "EC2.7.1.107"; KO "K00901"; similar_genes "DGKQ_HUMAN(e-value:2.0e-24;bit-score:110.0)"; Scaffold009 rebuild exon 1600567 1600656 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1600827 1600925 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1600999 1601164 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1601244 1601411 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1601504 1601707 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1601794 1601902 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1601978 1602281 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1602362 1602519 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1602609 1602821 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1602905 1603047 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1603236 1603447 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1603519 1603817 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1603915 1604143 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1604435 1604655 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1604736 1604838 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1607669 1607748 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild exon 1608041 1608278 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.2"; Scaffold009 rebuild transcript 1600619 1608278 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; gene_name "DGK"; annotation "diacylglycerol kinase [EC:2.7.1.107]"; Pfam "[RA] Ras association (RalGDS/AF-6) domain|[DAGK_cat] Diacylglycerol kinase catalytic domain|[C1_1] Phorbol esters/diacylglycerol binding domain (C1 domain)|[DAGK_acc] Diacylglycerol kinase accessory domain"; CDD "Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known."; EC "EC2.7.1.107"; KO "K00901"; similar_genes "DGKQ_HUMAN(e-value:2.0e-24;bit-score:110.0)"; Scaffold009 rebuild exon 1600619 1600702 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1600827 1600925 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1600999 1601164 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1601244 1601411 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1601504 1601707 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1601794 1601902 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1601978 1602281 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1602362 1602519 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1602609 1602821 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1602905 1603047 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1603236 1603447 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1603519 1603817 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1603915 1604143 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1604435 1604655 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1604736 1604838 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1607669 1607748 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild exon 1608041 1608278 . - . gene_id "RvY_13963"; transcript_id "RvY_13963.3"; Scaffold009 rebuild transcript 1610357 1611697 . - . gene_id "RvY_13964"; transcript_id "RvY_13964.1"; gene_name "p23_DYX1C1_like"; annotation "hypothetical protein."; Pfam "[TPR_11] TPR repeat|[CS]"; CDD "p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region."; similar_genes "DYXC1_MOUSE(e-value:6.8e-10;bit-score:62.0)"; Scaffold009 rebuild exon 1610357 1611697 . - . gene_id "RvY_13964"; transcript_id "RvY_13964.1"; Scaffold009 rebuild transcript 1612102 1612761 . - . gene_id "RvY_13965"; transcript_id "RvY_13965.1"; gene_name "GOSR2"; annotation "golgi SNAP receptor complex member 2"; Pfam "[V-SNARE_C] Snare region anchored in the vesicle membrane C-terminus"; KO "K08496"; Scaffold009 rebuild exon 1612102 1612761 . - . gene_id "RvY_13965"; transcript_id "RvY_13965.1"; Scaffold009 rebuild transcript 1613702 1615755 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; gene_name "MAP2K4"; annotation "mitogen-activated protein kinase kinase 4 [EC:2.7.12.2]"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic."; EC "EC2.7.12.2"; KO "K04430"; similar_genes "MP2K4_HUMAN(e-value:3.3e-20;bit-score:96.0)"; Scaffold009 rebuild exon 1613702 1613821 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1613892 1613937 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1614036 1614190 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1614260 1614337 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1614428 1614552 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1614618 1614789 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1614857 1614973 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1615044 1615105 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1615182 1615233 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1615298 1615358 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1615432 1615585 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild exon 1615668 1615755 . - . gene_id "RvY_13966"; transcript_id "RvY_13966.1"; Scaffold009 rebuild transcript 1616868 1618945 . + . gene_id "RvY_13967"; transcript_id "RvY_13967.1"; gene_name "eRF-3"; annotation "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A"; Pfam "[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU_D3] Elongation factor Tu C-terminal domain|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]"; KO "K03267"; similar_genes "ERF3A_HUMAN(e-value:8.9e-97;bit-score:351.0)"; Scaffold009 rebuild exon 1616868 1617045 . + . gene_id "RvY_13967"; transcript_id "RvY_13967.1"; Scaffold009 rebuild exon 1617152 1617331 . + . gene_id "RvY_13967"; transcript_id "RvY_13967.1"; Scaffold009 rebuild exon 1617407 1617517 . + . gene_id "RvY_13967"; transcript_id "RvY_13967.1"; Scaffold009 rebuild exon 1617611 1617722 . + . gene_id "RvY_13967"; transcript_id "RvY_13967.1"; Scaffold009 rebuild exon 1617808 1618945 . + . gene_id "RvY_13967"; transcript_id "RvY_13967.1"; Scaffold009 rebuild transcript 1619442 1622252 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; gene_name "(1)FHIT(2)K01506"; annotation "Nitrilase homolog 1"; Pfam "(1)[HIT]|[CN_hydrolase] Carbon-nitrogen hydrolase|(1)[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10."; EC "(1)EC3.5.-.-|EC3.6.1.29(2)EC3.5.-.-"; KO "(1)K01522(2)K01506"; similar_genes "NIT1_RAT(e-value:2.0e-58;bit-score:223.0)"; Scaffold009 rebuild exon 1619442 1619573 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1619701 1620001 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1620105 1620160 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1620240 1620350 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1620408 1620509 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1621031 1621313 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1621678 1621743 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1621827 1621906 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild exon 1622025 1622252 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.1"; Scaffold009 rebuild transcript 1619442 1621477 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; gene_name "(1)FHIT(2)K01506"; annotation "Nitrilase homolog 1"; Pfam "(1)[HIT]|[CN_hydrolase] Carbon-nitrogen hydrolase|(1)[DcpS_C] Scavenger mRNA decapping enzyme C-term binding"; CDD "Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10."; EC "(1)EC3.5.-.-|EC3.6.1.29(2)EC3.5.-.-"; KO "(1)K01522(2)K01506"; similar_genes "NIT1_RAT(e-value:2.0e-58;bit-score:223.0)"; Scaffold009 rebuild exon 1619442 1619573 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; Scaffold009 rebuild exon 1619701 1620001 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; Scaffold009 rebuild exon 1620105 1620160 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; Scaffold009 rebuild exon 1620240 1620350 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; Scaffold009 rebuild exon 1620408 1620509 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; Scaffold009 rebuild exon 1621031 1621477 . + . gene_id "RvY_13968"; transcript_id "RvY_13968.2"; Scaffold009 rebuild transcript 1623204 1623758 . - . gene_id "RvY_13969"; transcript_id "RvY_13969.1"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold009 rebuild exon 1623204 1623758 . - . gene_id "RvY_13969"; transcript_id "RvY_13969.1"; Scaffold009 rebuild transcript 1623130 1623519 . - . gene_id "RvY_13969"; transcript_id "RvY_13969.2"; annotation "hypothetical protein."; Pfam "[HLH] Helix-loop-helix DNA-binding domain"; Scaffold009 rebuild exon 1623130 1623519 . - . gene_id "RvY_13969"; transcript_id "RvY_13969.2"; Scaffold009 rebuild transcript 1624607 1641484 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; annotation "putative Pseudouridine-metabolizing bifunctional protein C1861.05"; Pfam "[PfkB] pfkB family carbohydrate kinase|[Indigoidine_A] Indigoidine synthase A like protein"; EC "EC3.2.-.-"; similar_genes "YOW5_SCHPO(e-value:2.7e-28;bit-score:123.0)"; Scaffold009 rebuild exon 1624607 1624661 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1624718 1624814 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1624874 1625229 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1625301 1625410 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1625476 1625602 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1625675 1625795 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1625876 1625961 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1626036 1626229 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1626308 1626364 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1630554 1630605 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1630705 1630814 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1630895 1631026 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1631199 1631313 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1640770 1640916 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1640990 1641236 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild exon 1641304 1641484 . + . gene_id "RvY_13970"; transcript_id "RvY_13970.1"; Scaffold009 rebuild transcript 1625902 1626339 . - . gene_id "RvY_13971"; transcript_id "RvY_13971.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1625902 1626339 . - . gene_id "RvY_13971"; transcript_id "RvY_13971.1"; Scaffold009 rebuild transcript 1626601 1628599 . - . gene_id "RvY_13972"; transcript_id "RvY_13972.1"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; Scaffold009 rebuild exon 1626601 1626921 . - . gene_id "RvY_13972"; transcript_id "RvY_13972.1"; Scaffold009 rebuild exon 1626993 1627075 . - . gene_id "RvY_13972"; transcript_id "RvY_13972.1"; Scaffold009 rebuild exon 1627292 1627720 . - . gene_id "RvY_13972"; transcript_id "RvY_13972.1"; Scaffold009 rebuild exon 1628080 1628277 . - . gene_id "RvY_13972"; transcript_id "RvY_13972.1"; Scaffold009 rebuild exon 1628419 1628599 . - . gene_id "RvY_13972"; transcript_id "RvY_13972.1"; Scaffold009 rebuild transcript 1631648 1632079 . - . gene_id "RvY_13973"; transcript_id "RvY_13973.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1631648 1632079 . - . gene_id "RvY_13973"; transcript_id "RvY_13973.1"; Scaffold009 rebuild transcript 1632160 1632390 . - . gene_id "RvY_13974"; transcript_id "RvY_13974.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1632160 1632390 . - . gene_id "RvY_13974"; transcript_id "RvY_13974.1"; Scaffold009 rebuild transcript 1633139 1634048 . - . gene_id "RvY_13975"; transcript_id "RvY_13975.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold009 rebuild exon 1633139 1633704 . - . gene_id "RvY_13975"; transcript_id "RvY_13975.1"; Scaffold009 rebuild exon 1633769 1634048 . - . gene_id "RvY_13975"; transcript_id "RvY_13975.1"; Scaffold009 rebuild transcript 1633515 1634048 . - . gene_id "RvY_13975"; transcript_id "RvY_13975.2"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold009 rebuild exon 1633515 1634048 . - . gene_id "RvY_13975"; transcript_id "RvY_13975.2"; Scaffold009 rebuild transcript 1635999 1638062 . - . gene_id "RvY_13976"; transcript_id "RvY_13976.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold009 rebuild exon 1635999 1636172 . - . gene_id "RvY_13976"; transcript_id "RvY_13976.1"; Scaffold009 rebuild exon 1636416 1636735 . - . gene_id "RvY_13976"; transcript_id "RvY_13976.1"; Scaffold009 rebuild exon 1637232 1637372 . - . gene_id "RvY_13976"; transcript_id "RvY_13976.1"; Scaffold009 rebuild exon 1637729 1638062 . - . gene_id "RvY_13976"; transcript_id "RvY_13976.1"; Scaffold009 rebuild transcript 1639521 1640487 . - . gene_id "RvY_13977"; transcript_id "RvY_13977.1"; annotation "hypothetical protein."; Pfam "[Claudin_2] PMP-22/EMP/MP20/Claudin tight junction"; Scaffold009 rebuild exon 1639521 1639849 . - . gene_id "RvY_13977"; transcript_id "RvY_13977.1"; Scaffold009 rebuild exon 1640184 1640487 . - . gene_id "RvY_13977"; transcript_id "RvY_13977.1"; Scaffold009 rebuild transcript 1641873 1642762 . - . gene_id "RvY_13978"; transcript_id "RvY_13978.1"; annotation "hypothetical protein."; Pfam "[Frag1] Frag1/DRAM/Sfk1 family"; Scaffold009 rebuild exon 1641873 1642091 . - . gene_id "RvY_13978"; transcript_id "RvY_13978.1"; Scaffold009 rebuild exon 1642154 1642762 . - . gene_id "RvY_13978"; transcript_id "RvY_13978.1"; Scaffold009 rebuild transcript 1643901 1644413 . - . gene_id "RvY_13979"; transcript_id "RvY_13979.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1643901 1644413 . - . gene_id "RvY_13979"; transcript_id "RvY_13979.1"; Scaffold009 rebuild transcript 1645721 1650145 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; gene_name "ATP7"; annotation "Copper-transporting ATPase 1"; Pfam "[HMA] Heavy-metal-associated domain|[E1-E2_ATPase] E1-E2 ATPase|[HAD] haloacid dehalogenase-like hydrolase|[Hydrolase] haloacid dehalogenase-like hydrolase"; CDD "copper-(or silver)-translocating P-type ATPase. A member from Halobacterium is annotated as ""molybdenum-binding protein"" although no evidence can be found for this classification."; EC "EC3.6.3.4"; KO "K01533"; similar_genes "ATP7A_CRIGR(e-value:1.8e-63;bit-score:240.0)"; Scaffold009 rebuild exon 1645721 1645777 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1645858 1646019 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1646105 1646185 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1646300 1646461 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1646535 1646774 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1646839 1647069 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1647134 1647383 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1647447 1647817 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1647880 1648098 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1648329 1648511 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1648573 1648939 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1648999 1649141 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1649204 1649413 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1649486 1649603 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild exon 1649799 1650145 . + . gene_id "RvY_13980"; transcript_id "RvY_13980.1"; Scaffold009 rebuild transcript 1651071 1651340 . - . gene_id "RvY_13981"; transcript_id "RvY_13981.1"; gene_name "SNRPF"; annotation "putative Small nuclear ribonucleoprotein F"; Pfam "[LSM]"; CDD "The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers."; KO "K11098"; similar_genes "RUXF_HUMAN(e-value:1.4e-35;bit-score:147.0)"; Scaffold009 rebuild exon 1651071 1651340 . - . gene_id "RvY_13981"; transcript_id "RvY_13981.1"; Scaffold009 rebuild transcript 1652182 1653669 . + . gene_id "RvY_13982"; transcript_id "RvY_13982.1"; annotation "putative Brain protein 16-like"; Pfam "[DUF384]|[DUF383]"; similar_genes "BP16L_HUMAN(e-value:2.2e-38;bit-score:157.0)"; Scaffold009 rebuild exon 1652182 1652911 . + . gene_id "RvY_13982"; transcript_id "RvY_13982.1"; Scaffold009 rebuild exon 1653092 1653282 . + . gene_id "RvY_13982"; transcript_id "RvY_13982.1"; Scaffold009 rebuild exon 1653427 1653669 . + . gene_id "RvY_13982"; transcript_id "RvY_13982.1"; Scaffold009 rebuild transcript 1655726 1656839 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; gene_name "HMGB1"; annotation "putative High mobility group protein B1"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box"; CDD "HMG (high mobility group) box."; KO "K10802"; similar_genes "HMGB1_PAPAN(e-value:5.8e-41;bit-score:165.0)"; Scaffold009 rebuild exon 1655726 1655797 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; Scaffold009 rebuild exon 1655872 1655958 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; Scaffold009 rebuild exon 1656018 1656172 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; Scaffold009 rebuild exon 1656270 1656444 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; Scaffold009 rebuild exon 1656634 1656741 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; Scaffold009 rebuild exon 1656804 1656839 . + . gene_id "RvY_13983"; transcript_id "RvY_13983.1"; Scaffold009 rebuild transcript 1657284 1658086 . - . gene_id "RvY_13984"; transcript_id "RvY_13984.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1657284 1657946 . - . gene_id "RvY_13984"; transcript_id "RvY_13984.1"; Scaffold009 rebuild exon 1658069 1658086 . - . gene_id "RvY_13984"; transcript_id "RvY_13984.1"; Scaffold009 rebuild transcript 1659183 1666412 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; gene_name "SUPT6H"; annotation "putative Transcription elongation factor SPT6"; Pfam "[HHH_3] Helix-hairpin-helix motif"; CDD "Transcriptional accessory protein [Transcription]"; KO "K11292"; similar_genes "SPT6H_DANRE(e-value:4.1e-31;bit-score:132.0)"; Scaffold009 rebuild exon 1659183 1659509 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1659572 1659952 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1660011 1660165 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1660234 1660366 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1660454 1660666 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1660753 1660945 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1661017 1661325 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1661391 1661520 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1661582 1661732 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1661913 1662128 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1662334 1662632 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1662695 1662906 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1662971 1663218 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1663278 1663520 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1663592 1664029 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1664171 1664509 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1664571 1664767 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1664959 1665211 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1665313 1665688 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1665759 1665928 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild exon 1666149 1666412 . + . gene_id "RvY_13985"; transcript_id "RvY_13985.1"; Scaffold009 rebuild transcript 1666751 1667655 . - . gene_id "RvY_13986"; transcript_id "RvY_13986.1"; annotation "hypothetical protein."; Pfam "[F-box-like]|[F-box]"; Scaffold009 rebuild exon 1666751 1667186 . - . gene_id "RvY_13986"; transcript_id "RvY_13986.1"; Scaffold009 rebuild exon 1667369 1667655 . - . gene_id "RvY_13986"; transcript_id "RvY_13986.1"; Scaffold009 rebuild transcript 1668276 1670826 . - . gene_id "RvY_13987"; transcript_id "RvY_13987.1"; annotation "hypothetical protein."; Pfam "[PUF] Pumilio-family RNA binding repeat"; KO "K14790"; Scaffold009 rebuild exon 1668276 1668617 . - . gene_id "RvY_13987"; transcript_id "RvY_13987.1"; Scaffold009 rebuild exon 1668805 1669575 . - . gene_id "RvY_13987"; transcript_id "RvY_13987.1"; Scaffold009 rebuild exon 1669716 1670239 . - . gene_id "RvY_13987"; transcript_id "RvY_13987.1"; Scaffold009 rebuild exon 1670318 1670525 . - . gene_id "RvY_13987"; transcript_id "RvY_13987.1"; Scaffold009 rebuild exon 1670584 1670826 . - . gene_id "RvY_13987"; transcript_id "RvY_13987.1"; Scaffold009 rebuild transcript 1671291 1673229 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1671291 1671791 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1671862 1671958 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1672042 1672093 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1672176 1672275 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1672360 1672427 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1672499 1672611 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1672687 1672807 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1672879 1673008 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild exon 1673065 1673229 . + . gene_id "RvY_13988"; transcript_id "RvY_13988.1"; Scaffold009 rebuild transcript 1674019 1674838 . - . gene_id "RvY_13989"; transcript_id "RvY_13989.1"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"; Scaffold009 rebuild exon 1674019 1674158 . - . gene_id "RvY_13989"; transcript_id "RvY_13989.1"; Scaffold009 rebuild exon 1674247 1674379 . - . gene_id "RvY_13989"; transcript_id "RvY_13989.1"; Scaffold009 rebuild exon 1674446 1674582 . - . gene_id "RvY_13989"; transcript_id "RvY_13989.1"; Scaffold009 rebuild exon 1674685 1674838 . - . gene_id "RvY_13989"; transcript_id "RvY_13989.1"; Scaffold009 rebuild transcript 1675644 1677725 . + . gene_id "RvY_13990"; transcript_id "RvY_13990.1"; annotation "putative Zinc transporter ZIP14"; Pfam "[Zip] ZIP Zinc transporter"; KO "K14720"; similar_genes "S39AE_MOUSE(e-value:1.2e-28;bit-score:124.0)"; Scaffold009 rebuild exon 1675644 1676207 . + . gene_id "RvY_13990"; transcript_id "RvY_13990.1"; Scaffold009 rebuild exon 1676400 1676665 . + . gene_id "RvY_13990"; transcript_id "RvY_13990.1"; Scaffold009 rebuild exon 1676749 1676757 . + . gene_id "RvY_13990"; transcript_id "RvY_13990.1"; Scaffold009 rebuild exon 1677000 1677288 . + . gene_id "RvY_13990"; transcript_id "RvY_13990.1"; Scaffold009 rebuild exon 1677567 1677725 . + . gene_id "RvY_13990"; transcript_id "RvY_13990.1"; Scaffold009 rebuild transcript 1678086 1679037 . - . gene_id "RvY_13991"; transcript_id "RvY_13991.1"; annotation "hypothetical protein."; Pfam "[Tektin] Tektin family"; Scaffold009 rebuild exon 1678086 1678314 . - . gene_id "RvY_13991"; transcript_id "RvY_13991.1"; Scaffold009 rebuild exon 1678383 1678602 . - . gene_id "RvY_13991"; transcript_id "RvY_13991.1"; Scaffold009 rebuild exon 1678667 1678893 . - . gene_id "RvY_13991"; transcript_id "RvY_13991.1"; Scaffold009 rebuild exon 1678991 1679037 . - . gene_id "RvY_13991"; transcript_id "RvY_13991.1"; Scaffold009 rebuild transcript 1680071 1686657 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; annotation "putative Oxysterol-binding protein-related protein 1"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Oxysterol_BP] Oxysterol-binding protein|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; similar_genes "OSBL1_RAT(e-value:1.9e-37;bit-score:153.0)"; Scaffold009 rebuild exon 1680071 1680267 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1680544 1680667 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1680727 1681039 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1681111 1681229 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1681361 1681439 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1681497 1681673 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1681744 1681877 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1682015 1682113 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1682215 1682290 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1683346 1683472 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1683939 1684218 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1684588 1684896 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1684967 1685062 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1685134 1685197 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1685275 1685348 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1685470 1685582 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1685737 1685967 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1686058 1686333 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild exon 1686411 1686657 . - . gene_id "RvY_13992"; transcript_id "RvY_13992.1"; Scaffold009 rebuild transcript 1686503 1687145 . + . gene_id "RvY_13993"; transcript_id "RvY_13993.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1686503 1686718 . + . gene_id "RvY_13993"; transcript_id "RvY_13993.1"; Scaffold009 rebuild exon 1687023 1687145 . + . gene_id "RvY_13993"; transcript_id "RvY_13993.1"; Scaffold009 rebuild transcript 1687244 1688017 . + . gene_id "RvY_13994"; transcript_id "RvY_13994.1"; gene_name "RP-L17e"; annotation "60S ribosomal protein L17"; Pfam "[Ribosomal_L22] Ribosomal protein L22p/L17e"; CDD "60S ribosomal protein L22/L17e; Provisional"; KO "K02880"; similar_genes "RL17_IXOSC(e-value:1.2e-64;bit-score:244.0)"; Scaffold009 rebuild exon 1687244 1687459 . + . gene_id "RvY_13994"; transcript_id "RvY_13994.1"; Scaffold009 rebuild exon 1687576 1687771 . + . gene_id "RvY_13994"; transcript_id "RvY_13994.1"; Scaffold009 rebuild exon 1687869 1688017 . + . gene_id "RvY_13994"; transcript_id "RvY_13994.1"; Scaffold009 rebuild transcript 1688242 1691104 . - . gene_id "RvY_13995"; transcript_id "RvY_13995.1"; gene_name "elaC"; annotation "ribonuclease Z [EC:3.1.26.11]"; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Lactamase_B_2] Beta-lactamase superfamily domain|[Lactamase_B_4] Family description"; CDD "Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]"; EC "EC3.1.26.11"; KO "K00784"; similar_genes "RNZ2_MOUSE(e-value:1.1e-24;bit-score:111.0)"; Scaffold009 rebuild exon 1688242 1688657 . - . gene_id "RvY_13995"; transcript_id "RvY_13995.1"; Scaffold009 rebuild exon 1688732 1689502 . - . gene_id "RvY_13995"; transcript_id "RvY_13995.1"; Scaffold009 rebuild exon 1689747 1690455 . - . gene_id "RvY_13995"; transcript_id "RvY_13995.1"; Scaffold009 rebuild exon 1690551 1690667 . - . gene_id "RvY_13995"; transcript_id "RvY_13995.1"; Scaffold009 rebuild exon 1690739 1691104 . - . gene_id "RvY_13995"; transcript_id "RvY_13995.1"; Scaffold009 rebuild transcript 1692002 1693088 . + . gene_id "RvY_13996"; transcript_id "RvY_13996.1"; gene_name "TIPIN"; annotation "TIMELESS-interacting protein"; Pfam "[Swi3] Replication Fork Protection Component Swi3"; KO "K10904"; Scaffold009 rebuild exon 1692002 1692331 . + . gene_id "RvY_13996"; transcript_id "RvY_13996.1"; Scaffold009 rebuild exon 1692450 1692572 . + . gene_id "RvY_13996"; transcript_id "RvY_13996.1"; Scaffold009 rebuild exon 1692654 1693088 . + . gene_id "RvY_13996"; transcript_id "RvY_13996.1"; Scaffold009 rebuild transcript 1693476 1695733 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; annotation "hypothetical protein."; Pfam "[DUF2404] Putative integral membrane protein conserved region (DUF2404)"; Scaffold009 rebuild exon 1693476 1693589 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; Scaffold009 rebuild exon 1693657 1693823 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; Scaffold009 rebuild exon 1693902 1694160 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; Scaffold009 rebuild exon 1694439 1694716 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; Scaffold009 rebuild exon 1694781 1695325 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; Scaffold009 rebuild exon 1695411 1695733 . - . gene_id "RvY_13997"; transcript_id "RvY_13997.1"; Scaffold009 rebuild transcript 1696309 1696702 . + . gene_id "RvY_13998"; transcript_id "RvY_13998.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1696309 1696410 . + . gene_id "RvY_13998"; transcript_id "RvY_13998.1"; Scaffold009 rebuild exon 1696541 1696702 . + . gene_id "RvY_13998"; transcript_id "RvY_13998.1"; Scaffold009 rebuild transcript 1697317 1697688 . + . gene_id "RvY_13999"; transcript_id "RvY_13999.1"; gene_name "FAM32A"; annotation "protein FAM32A"; Pfam "[DUF1754] Eukaryotic family of unknown function (DUF1754)"; KO "K13120"; similar_genes "FA32A_PONAB(e-value:1.1e-18;bit-score:91.0)"; Scaffold009 rebuild exon 1697317 1697688 . + . gene_id "RvY_13999"; transcript_id "RvY_13999.1"; Scaffold009 rebuild transcript 1698770 1698910 . + . gene_id "RvY_14000"; transcript_id "RvY_14000.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1698770 1698910 . + . gene_id "RvY_14000"; transcript_id "RvY_14000.1"; Scaffold009 rebuild transcript 1700571 1700849 . + . gene_id "RvY_14001"; transcript_id "RvY_14001.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1700571 1700849 . + . gene_id "RvY_14001"; transcript_id "RvY_14001.1"; Scaffold009 rebuild transcript 1702009 1703595 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; annotation "hypothetical protein."; Pfam "[Med18] Med18 protein"; KO "K15135"; Scaffold009 rebuild exon 1702009 1702186 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild exon 1702259 1702328 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild exon 1702606 1702728 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild exon 1702847 1702925 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild exon 1703000 1703095 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild exon 1703179 1703234 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild exon 1703559 1703595 . + . gene_id "RvY_14002"; transcript_id "RvY_14002.1"; Scaffold009 rebuild transcript 1703661 1704080 . + . gene_id "RvY_14003"; transcript_id "RvY_14003.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1703661 1704080 . + . gene_id "RvY_14003"; transcript_id "RvY_14003.1"; Scaffold009 rebuild transcript 1704670 1707149 . + . gene_id "RvY_14004"; transcript_id "RvY_14004.1"; gene_name "HSPA1_8"; annotation "Heat shock protein 70 B2"; Pfam "[HSP70] Hsp70 protein|[MreB_Mbl] MreB/Mbl protein"; CDD "heat shock 70 kDa protein; Provisional"; KO "K03283"; similar_genes "HSP74_ANOAL(e-value:4.8e-261;bit-score:896.0)"; Scaffold009 rebuild exon 1704670 1705083 . + . gene_id "RvY_14004"; transcript_id "RvY_14004.1"; Scaffold009 rebuild exon 1705174 1705473 . + . gene_id "RvY_14004"; transcript_id "RvY_14004.1"; Scaffold009 rebuild exon 1705726 1706233 . + . gene_id "RvY_14004"; transcript_id "RvY_14004.1"; Scaffold009 rebuild exon 1706446 1707149 . + . gene_id "RvY_14004"; transcript_id "RvY_14004.1"; Scaffold009 rebuild transcript 1707931 1709443 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; annotation "hypothetical protein."; Pfam "[TPD52] Tumour protein D52 family"; Scaffold009 rebuild exon 1707931 1708123 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; Scaffold009 rebuild exon 1708209 1708310 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; Scaffold009 rebuild exon 1708378 1708437 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; Scaffold009 rebuild exon 1708582 1708730 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; Scaffold009 rebuild exon 1708803 1708912 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; Scaffold009 rebuild exon 1709374 1709443 . - . gene_id "RvY_14005"; transcript_id "RvY_14005.1"; Scaffold009 rebuild transcript 1711980 1712591 . + . gene_id "RvY_14006"; transcript_id "RvY_14006.1"; gene_name "NDUFB8"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUF_B8] NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03964"; Scaffold009 rebuild exon 1711980 1712591 . + . gene_id "RvY_14006"; transcript_id "RvY_14006.1"; Scaffold009 rebuild transcript 1712776 1717838 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; annotation "hypothetical protein."; Pfam "[MMS1_N] Mono-functional DNA-alkylating methyl methanesulfonate N-term|[CPSF_A] CPSF A subunit region"; Scaffold009 rebuild exon 1712776 1712856 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; Scaffold009 rebuild exon 1713217 1714233 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; Scaffold009 rebuild exon 1714516 1714850 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; Scaffold009 rebuild exon 1715105 1716037 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; Scaffold009 rebuild exon 1716332 1717210 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; Scaffold009 rebuild exon 1717541 1717838 . + . gene_id "RvY_14007"; transcript_id "RvY_14007.1"; Scaffold009 rebuild transcript 1718013 1720455 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; gene_name "ELP3"; annotation "Elongator complex protein 3"; Pfam "[Radical_SAM] Radical SAM superfamily|[Acetyltransf_1] Acetyltransferase (GNAT) family"; CDD "histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases."; EC "EC2.3.1.48"; KO "K07739"; similar_genes "ELP3_CHICK(e-value:2.3e-269;bit-score:924.0)"; Scaffold009 rebuild exon 1718013 1718522 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1718594 1718750 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1718825 1719018 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1719093 1719381 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1719452 1719627 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1719718 1719927 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1719992 1720079 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1720146 1720290 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild exon 1720368 1720455 . - . gene_id "RvY_14008"; transcript_id "RvY_14008.1"; Scaffold009 rebuild transcript 1720917 1721126 . - . gene_id "RvY_14009"; transcript_id "RvY_14009.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1720917 1721126 . - . gene_id "RvY_14009"; transcript_id "RvY_14009.1"; Scaffold009 rebuild transcript 1721274 1725538 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; gene_name "STT3"; annotation "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A"; Pfam "[STT3] Oligosaccharyl transferase STT3 subunit|[PMT_2] Dolichyl-phosphate-mannose-protein mannosyltransferase"; EC "EC2.4.1.119"; KO "K07151"; similar_genes "STT3A_HUMAN(e-value:8.0e-117;bit-score:417.0)"; Scaffold009 rebuild exon 1721274 1721288 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1721357 1721543 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1721757 1721807 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1721897 1722028 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1722200 1722345 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1722414 1722611 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1722797 1722907 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1723109 1723189 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1723419 1723728 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1723909 1724171 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1724374 1724562 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1724767 1724805 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1724867 1725047 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1725119 1725307 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild exon 1725393 1725538 . + . gene_id "RvY_14010"; transcript_id "RvY_14010.1"; Scaffold009 rebuild transcript 1726378 1729977 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; product "Ku80"; gene_name "XRCC5"; annotation "Ku80 | ATP-dependent DNA helicase 2 subunit 2"; Pfam "[Ku_C] Ku70/Ku80 C-terminal arm|[Ku] Ku70/Ku80 beta-barrel domain|[Ku_PK_bind] Ku C terminal domain like|[Ku_N] Ku70/Ku80 N-terminal alpha/beta domain"; CDD "Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity."; KO "K10885"; Scaffold009 rebuild exon 1726378 1726392 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1726458 1726571 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1726640 1726832 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1726900 1726960 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1727026 1727154 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1727213 1727483 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1727578 1727716 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1727903 1728228 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1728290 1728441 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1728709 1728978 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1729031 1729194 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1729397 1729509 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1729584 1729680 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1729747 1729886 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild exon 1729957 1729977 . + . gene_id "RvY_14011"; transcript_id "RvY_14011.1"; Scaffold009 rebuild transcript 1730371 1731218 . - . gene_id "RvY_14012"; transcript_id "RvY_14012.1"; gene_name "SF3B14"; annotation "putative Pre-mRNA branch site p14-like protein"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold009 rebuild exon 1730371 1730596 . - . gene_id "RvY_14012"; transcript_id "RvY_14012.1"; Scaffold009 rebuild exon 1730701 1730819 . - . gene_id "RvY_14012"; transcript_id "RvY_14012.1"; Scaffold009 rebuild exon 1731195 1731218 . - . gene_id "RvY_14012"; transcript_id "RvY_14012.1"; Scaffold009 rebuild transcript 1731417 1732920 . + . gene_id "RvY_14013"; transcript_id "RvY_14013.1"; annotation "hypothetical protein."; Pfam "[DDE_4] DDE superfamily endonuclease"; Scaffold009 rebuild exon 1731417 1731486 . + . gene_id "RvY_14013"; transcript_id "RvY_14013.1"; Scaffold009 rebuild exon 1732478 1732920 . + . gene_id "RvY_14013"; transcript_id "RvY_14013.1"; Scaffold009 rebuild transcript 1733211 1734453 . - . gene_id "RvY_14014"; transcript_id "RvY_14014.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1733211 1733767 . - . gene_id "RvY_14014"; transcript_id "RvY_14014.1"; Scaffold009 rebuild exon 1734018 1734453 . - . gene_id "RvY_14014"; transcript_id "RvY_14014.1"; Scaffold009 rebuild transcript 1735090 1736416 . + . gene_id "RvY_14015"; transcript_id "RvY_14015.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1735090 1736188 . + . gene_id "RvY_14015"; transcript_id "RvY_14015.1"; Scaffold009 rebuild exon 1736259 1736416 . + . gene_id "RvY_14015"; transcript_id "RvY_14015.1"; Scaffold009 rebuild transcript 1736698 1738956 . - . gene_id "RvY_14016"; transcript_id "RvY_14016.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1736698 1737987 . - . gene_id "RvY_14016"; transcript_id "RvY_14016.1"; Scaffold009 rebuild exon 1738311 1738494 . - . gene_id "RvY_14016"; transcript_id "RvY_14016.1"; Scaffold009 rebuild exon 1738568 1738956 . - . gene_id "RvY_14016"; transcript_id "RvY_14016.1"; Scaffold009 rebuild transcript 1739443 1741654 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; annotation "hypothetical protein."; similar_genes "PTTG_HUMAN(e-value:1.0e-06;bit-score:51.0)"; Scaffold009 rebuild exon 1739443 1739614 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild exon 1739675 1739727 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild exon 1741002 1741122 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild exon 1741188 1741287 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild exon 1741354 1741428 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild exon 1741502 1741548 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild exon 1741614 1741654 . + . gene_id "RvY_14017"; transcript_id "RvY_14017.1"; Scaffold009 rebuild transcript 1739493 1739750 . - . gene_id "RvY_14018"; transcript_id "RvY_14018.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1739493 1739750 . - . gene_id "RvY_14018"; transcript_id "RvY_14018.1"; Scaffold009 rebuild transcript 1739893 1740306 . - . gene_id "RvY_14019"; transcript_id "RvY_14019.1"; gene_name "PRK13912"; annotation "hypothetical protein."; Pfam "[PLDc_2] PLD-like domain"; CDD "nuclease NucT; Provisional"; Scaffold009 rebuild exon 1739893 1740306 . - . gene_id "RvY_14019"; transcript_id "RvY_14019.1"; Scaffold009 rebuild transcript 1740470 1741209 . - . gene_id "RvY_14020"; transcript_id "RvY_14020.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1740470 1740693 . - . gene_id "RvY_14020"; transcript_id "RvY_14020.1"; Scaffold009 rebuild exon 1741047 1741209 . - . gene_id "RvY_14020"; transcript_id "RvY_14020.1"; Scaffold009 rebuild transcript 1743574 1745639 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1743574 1743672 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; Scaffold009 rebuild exon 1744184 1744546 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; Scaffold009 rebuild exon 1744618 1744808 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; Scaffold009 rebuild exon 1744883 1745111 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; Scaffold009 rebuild exon 1745178 1745425 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; Scaffold009 rebuild exon 1745501 1745639 . - . gene_id "RvY_14021"; transcript_id "RvY_14021.1"; Scaffold009 rebuild transcript 1745714 1748092 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; gene_name "KISc_KIF9_like"; annotation "hypothetical protein."; Pfam "[Kinesin] Kinesin motor domain"; CDD "Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward."; Scaffold009 rebuild exon 1745714 1745881 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild exon 1745965 1746111 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild exon 1746185 1746409 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild exon 1746477 1746569 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild exon 1746826 1746988 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild exon 1747051 1747361 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild exon 1747577 1748092 . - . gene_id "RvY_14022"; transcript_id "RvY_14022.1"; Scaffold009 rebuild transcript 1748441 1750000 . - . gene_id "RvY_14023"; transcript_id "RvY_14023.1"; annotation "putative Zinc transporter ZIP10"; Pfam "[Zip] ZIP Zinc transporter"; KO "K14716"; similar_genes "S39AA_MOUSE(e-value:3.4e-26;bit-score:116.0)"; Scaffold009 rebuild exon 1748441 1748891 . - . gene_id "RvY_14023"; transcript_id "RvY_14023.1"; Scaffold009 rebuild exon 1749135 1749324 . - . gene_id "RvY_14023"; transcript_id "RvY_14023.1"; Scaffold009 rebuild exon 1749406 1750000 . - . gene_id "RvY_14023"; transcript_id "RvY_14023.1"; Scaffold009 rebuild transcript 1753293 1756727 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; gene_name "GALNT"; annotation "Probable N-acetylgalactosaminyltransferase 7"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.-|EC2.4.1.41"; KO "K00710"; similar_genes "GALT7_CAEEL(e-value:1.2e-60;bit-score:231.0)"; Scaffold009 rebuild exon 1753293 1753517 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1753638 1754248 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1754345 1754474 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1754530 1754566 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1754664 1754871 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1755177 1755350 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1755476 1755620 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1755710 1755862 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1755950 1756048 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1756140 1756199 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1756301 1756478 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild exon 1756543 1756727 . + . gene_id "RvY_14024"; transcript_id "RvY_14024.1"; Scaffold009 rebuild transcript 1759020 1759403 . + . gene_id "RvY_14025"; transcript_id "RvY_14025.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1759020 1759403 . + . gene_id "RvY_14025"; transcript_id "RvY_14025.1"; Scaffold009 rebuild transcript 1760305 1760768 . - . gene_id "RvY_14026"; transcript_id "RvY_14026.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1760305 1760386 . - . gene_id "RvY_14026"; transcript_id "RvY_14026.1"; Scaffold009 rebuild exon 1760485 1760768 . - . gene_id "RvY_14026"; transcript_id "RvY_14026.1"; Scaffold009 rebuild transcript 1760856 1761158 . - . gene_id "RvY_14027"; transcript_id "RvY_14027.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1760856 1761158 . - . gene_id "RvY_14027"; transcript_id "RvY_14027.1"; Scaffold009 rebuild transcript 1761698 1765028 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; gene_name "K01104"; annotation "protein-tyrosine phosphatase [EC:3.1.3.48]"; Pfam "[CRAL_TRIO_2] Divergent CRAL/TRIO domain|[CRAL_TRIO] CRAL/TRIO domain|[Y_phosphatase] Protein-tyrosine phosphatase"; CDD "Protein tyrosine phosphatase, catalytic domain."; EC "EC3.1.3.48"; KO "K01104"; similar_genes "PTPRS_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold009 rebuild exon 1761698 1761745 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1761852 1762010 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1762096 1762185 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1762540 1762658 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1762732 1762837 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1762911 1763021 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1763098 1763337 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1763470 1763660 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1763741 1763889 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1763969 1764198 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1764273 1764324 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1764394 1764543 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1764610 1764689 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild exon 1764873 1765028 . + . gene_id "RvY_14028"; transcript_id "RvY_14028.1"; Scaffold009 rebuild transcript 1765297 1767746 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; gene_name "COG5273"; annotation "putative Palmitoyltransferase ZDHHC2"; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDHC2_HUMAN(e-value:1.9e-39;bit-score:160.0)"; Scaffold009 rebuild exon 1765297 1765441 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1765516 1765617 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1765874 1766000 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1766101 1766236 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1766323 1766426 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1766503 1766519 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1766589 1766621 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1766897 1766966 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1767046 1767175 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1767373 1767467 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1767527 1767553 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild exon 1767629 1767746 . - . gene_id "RvY_14029"; transcript_id "RvY_14029.1"; Scaffold009 rebuild transcript 1772319 1774932 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; gene_name "pp-GalNAc-T"; annotation "N-acetylgalactosaminyltransferase 7"; Pfam "[Glyco_transf_7C] N-terminal domain of galactosyltransferase|[Glycos_transf_2] Glycosyl transferase family 2|[Glyco_tranf_2_3] Glycosyltransferase like family 2|[Glyco_tranf_2_2] Glycosyltransferase like family 2|[Ricin_B_lectin] Ricin-type beta-trefoil lectin domain"; CDD "pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins."; EC "EC2.4.1.-"; similar_genes "GALT7_DROME(e-value:5.0e-91;bit-score:331.0)"; Scaffold009 rebuild exon 1772319 1772459 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1772526 1772755 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1772832 1773114 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1773183 1773277 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1773346 1773374 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1773462 1773609 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1773674 1773983 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1774135 1774233 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1774299 1774358 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1774432 1774548 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1774613 1774698 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild exon 1774776 1774932 . + . gene_id "RvY_14030"; transcript_id "RvY_14030.1"; Scaffold009 rebuild transcript 1776536 1777828 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; gene_name "OTUB1"; annotation "ubiquitin thioesterase protein OTUB1 [EC:3.4.-.-]"; Pfam "[Peptidase_C65] Peptidase C65 Otubain"; EC "EC3.4.-.-"; KO "K09602"; Scaffold009 rebuild exon 1776536 1776611 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; Scaffold009 rebuild exon 1776706 1776980 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; Scaffold009 rebuild exon 1777059 1777151 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; Scaffold009 rebuild exon 1777261 1777331 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; Scaffold009 rebuild exon 1777431 1777484 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; Scaffold009 rebuild exon 1777558 1777828 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.1"; Scaffold009 rebuild transcript 1776536 1777828 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; gene_name "OTUB1"; annotation "ubiquitin thioesterase protein OTUB1 [EC:3.4.-.-]"; Pfam "[Peptidase_C65] Peptidase C65 Otubain"; EC "EC3.4.-.-"; KO "K09602"; Scaffold009 rebuild exon 1776536 1776611 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild exon 1776706 1776980 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild exon 1777059 1777151 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild exon 1777261 1777331 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild exon 1777431 1777484 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild exon 1777558 1777630 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild exon 1777709 1777828 . + . gene_id "RvY_14031"; transcript_id "RvY_14031.2"; Scaffold009 rebuild transcript 1777264 1777539 . - . gene_id "RvY_14032"; transcript_id "RvY_14032.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1777264 1777539 . - . gene_id "RvY_14032"; transcript_id "RvY_14032.1"; Scaffold009 rebuild transcript 1778156 1778395 . + . gene_id "RvY_14033"; transcript_id "RvY_14033.1"; gene_name "OTUB1"; annotation "ubiquitin thioesterase protein OTUB1 [EC:3.4.-.-]"; Pfam "[Peptidase_C65] Peptidase C65 Otubain"; EC "EC3.4.-.-"; KO "K09602"; Scaffold009 rebuild exon 1778156 1778395 . + . gene_id "RvY_14033"; transcript_id "RvY_14033.1"; Scaffold009 rebuild transcript 1778620 1779672 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; annotation "rRNA-processing protein FCF1 homolog"; Pfam "[Fcf1]"; KO "K14566"; similar_genes "FCF1_BOVIN(e-value:1.2e-64;bit-score:244.0)"; Scaffold009 rebuild exon 1778620 1778763 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; Scaffold009 rebuild exon 1778836 1778923 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; Scaffold009 rebuild exon 1778992 1779213 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; Scaffold009 rebuild exon 1779309 1779380 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; Scaffold009 rebuild exon 1779487 1779554 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; Scaffold009 rebuild exon 1779670 1779672 . - . gene_id "RvY_14034"; transcript_id "RvY_14034.1"; Scaffold009 rebuild transcript 1780849 1783870 . + . gene_id "RvY_14035"; transcript_id "RvY_14035.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1780849 1780938 . + . gene_id "RvY_14035"; transcript_id "RvY_14035.1"; Scaffold009 rebuild exon 1781003 1781147 . + . gene_id "RvY_14035"; transcript_id "RvY_14035.1"; Scaffold009 rebuild exon 1781531 1781604 . + . gene_id "RvY_14035"; transcript_id "RvY_14035.1"; Scaffold009 rebuild exon 1783431 1783485 . + . gene_id "RvY_14035"; transcript_id "RvY_14035.1"; Scaffold009 rebuild exon 1783818 1783870 . + . gene_id "RvY_14035"; transcript_id "RvY_14035.1"; Scaffold009 rebuild transcript 1783922 1784965 . + . gene_id "RvY_14036"; transcript_id "RvY_14036.1"; annotation "hypothetical protein."; Pfam "[Nop25] Nucleolar protein 12 (25kDa)"; Scaffold009 rebuild exon 1783922 1783971 . + . gene_id "RvY_14036"; transcript_id "RvY_14036.1"; Scaffold009 rebuild exon 1784045 1784150 . + . gene_id "RvY_14036"; transcript_id "RvY_14036.1"; Scaffold009 rebuild exon 1784344 1784511 . + . gene_id "RvY_14036"; transcript_id "RvY_14036.1"; Scaffold009 rebuild exon 1784617 1784756 . + . gene_id "RvY_14036"; transcript_id "RvY_14036.1"; Scaffold009 rebuild exon 1784857 1784965 . + . gene_id "RvY_14036"; transcript_id "RvY_14036.1"; Scaffold009 rebuild transcript 1785212 1803484 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; gene_name "LRP1"; annotation "putative Low-density lipoprotein receptor-related protein 1"; Pfam "[Ldl_recept_b] Low-density lipoprotein receptor repeat class B|[Ldl_recept_a] Low-density lipoprotein receptor domain class A"; CDD "Low-density lipoprotein-receptor YWTD domain. Type ""B"" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin."; KO "K04550"; similar_genes "LRP1_CHICK(e-value:5.3e-29;bit-score:125.0)"; Scaffold009 rebuild exon 1785212 1785665 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1785843 1785959 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1786034 1786127 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1786191 1786501 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1786721 1786954 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1787034 1787249 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1787323 1787533 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1787620 1787799 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1787858 1788260 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1788553 1788965 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1789155 1789406 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1789482 1789585 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1789658 1789787 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1789849 1789962 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1790029 1790283 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1790365 1790533 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1790729 1790958 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1791035 1791337 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1791527 1791898 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1792168 1792576 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1792850 1793046 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1793110 1793153 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1793234 1793330 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1793397 1793653 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1793708 1793828 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1793891 1793919 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1793991 1794099 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1794284 1794803 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1794925 1795316 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1795577 1796055 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1796251 1796800 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1797113 1797994 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1798274 1798498 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1798569 1798697 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1798770 1798866 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1798947 1799094 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1799257 1799295 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1799369 1799488 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1799745 1799771 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1799851 1799939 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1800050 1800141 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1800210 1800267 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1800486 1800640 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1800735 1800869 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1800948 1801073 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1801388 1801525 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1801791 1801901 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1802009 1802089 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1802582 1802633 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1802701 1802823 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1802961 1803049 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1803108 1803251 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild exon 1803400 1803484 . - . gene_id "RvY_14037"; transcript_id "RvY_14037.1"; Scaffold009 rebuild transcript 1804459 1804638 . - . gene_id "RvY_14038"; transcript_id "RvY_14038.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1804459 1804638 . - . gene_id "RvY_14038"; transcript_id "RvY_14038.1"; Scaffold009 rebuild transcript 1805003 1805302 . - . gene_id "RvY_14039"; transcript_id "RvY_14039.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1805003 1805302 . - . gene_id "RvY_14039"; transcript_id "RvY_14039.1"; Scaffold009 rebuild transcript 1805735 1808497 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.1"; gene_name "trp"; annotation "hypothetical protein."; Pfam "(1)[TRP_2] Transient receptor ion channel II|(1)[Ank_2] Ankyrin repeats (3 copies)|(1)[Ank] Ankyrin repeat|[Ion_trans] Ion transport protein"; CDD "transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; similar_genes "(1)TRPC4_BOVIN(e-value:7.4e-20;bit-score:95.0)"; Scaffold009 rebuild exon 1805735 1805844 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.1"; Scaffold009 rebuild exon 1805962 1806053 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.1"; Scaffold009 rebuild exon 1806455 1806722 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.1"; Scaffold009 rebuild exon 1806837 1807821 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.1"; Scaffold009 rebuild exon 1807889 1808497 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.1"; Scaffold009 rebuild transcript 1806455 1807872 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.2"; gene_name "trp"; annotation "hypothetical protein."; Pfam "(1)[TRP_2] Transient receptor ion channel II|(1)[Ank_2] Ankyrin repeats (3 copies)|(1)[Ank] Ankyrin repeat|[Ion_trans] Ion transport protein"; CDD "transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999)."; similar_genes "(1)TRPC4_BOVIN(e-value:7.4e-20;bit-score:95.0)"; Scaffold009 rebuild exon 1806455 1806726 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.2"; Scaffold009 rebuild exon 1806837 1807608 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.2"; Scaffold009 rebuild exon 1807681 1807872 . + . gene_id "RvY_14040"; transcript_id "RvY_14040.2"; Scaffold009 rebuild transcript 1808698 1813147 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; gene_name "SENP7"; annotation "sentrin-specific protease 7 [EC:3.4.22.-]"; Pfam "[Peptidase_C48] Ulp1 protease family, C-terminal catalytic domain"; CDD "Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]"; EC "EC3.4.22.-"; KO "K08596"; Scaffold009 rebuild exon 1808698 1809116 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild exon 1809251 1809373 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild exon 1809717 1810210 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild exon 1810439 1810809 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild exon 1811025 1811297 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild exon 1811452 1812949 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild exon 1813032 1813147 . - . gene_id "RvY_14041"; transcript_id "RvY_14041.1"; Scaffold009 rebuild transcript 1814111 1815813 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; gene_name "Alpha_ANH_like_II"; annotation "Cytoplasmic tRNA 2-thiolation protein 1"; Pfam "[ATP_bind_3] PP-loop family"; CDD "This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus."; EC "EC2.7.7.-"; KO "K14168"; similar_genes "CTU1_XENTR(e-value:7.2e-122;bit-score:434.0)"; Scaffold009 rebuild exon 1814111 1814167 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1814292 1814415 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1814490 1814665 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1814761 1814938 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1815055 1815235 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1815334 1815452 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1815556 1815689 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild exon 1815769 1815813 . + . gene_id "RvY_14042"; transcript_id "RvY_14042.1"; Scaffold009 rebuild transcript 1816575 1817358 . + . gene_id "RvY_14043"; transcript_id "RvY_14043.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1816575 1816641 . + . gene_id "RvY_14043"; transcript_id "RvY_14043.1"; Scaffold009 rebuild exon 1816713 1816857 . + . gene_id "RvY_14043"; transcript_id "RvY_14043.1"; Scaffold009 rebuild exon 1817005 1817056 . + . gene_id "RvY_14043"; transcript_id "RvY_14043.1"; Scaffold009 rebuild exon 1817206 1817358 . + . gene_id "RvY_14043"; transcript_id "RvY_14043.1"; Scaffold009 rebuild transcript 1819434 1821209 . + . gene_id "RvY_14044"; transcript_id "RvY_14044.1"; gene_name "ACTL6B"; annotation "actin-like protein 6B"; Pfam "[Actin]"; KO "K11652"; similar_genes "ACL6B_BOVIN(e-value:2.4e-16;bit-score:83.0)"; Scaffold009 rebuild exon 1819434 1819596 . + . gene_id "RvY_14044"; transcript_id "RvY_14044.1"; Scaffold009 rebuild exon 1819694 1819874 . + . gene_id "RvY_14044"; transcript_id "RvY_14044.1"; Scaffold009 rebuild exon 1819962 1820085 . + . gene_id "RvY_14044"; transcript_id "RvY_14044.1"; Scaffold009 rebuild exon 1820277 1821209 . + . gene_id "RvY_14044"; transcript_id "RvY_14044.1"; Scaffold009 rebuild transcript 1821539 1823631 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1821539 1821855 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1821936 1822155 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1822239 1822298 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1822427 1822576 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1822677 1822787 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1822889 1822991 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1823218 1823534 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild exon 1823629 1823631 . - . gene_id "RvY_14045"; transcript_id "RvY_14045.1"; Scaffold009 rebuild transcript 1825084 1825437 . + . gene_id "RvY_14046"; transcript_id "RvY_14046.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1825084 1825437 . + . gene_id "RvY_14046"; transcript_id "RvY_14046.1"; Scaffold009 rebuild transcript 1825459 1826373 . - . gene_id "RvY_14047"; transcript_id "RvY_14047.1"; gene_name "UBE2M"; annotation "putative NEDD8-conjugating enzyme Ubc12"; Pfam "[UQ_con] Ubiquitin-conjugating enzyme"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10579"; similar_genes "UBC12_XENLA(e-value:6.5e-38;bit-score:155.0)"; Scaffold009 rebuild exon 1825459 1825809 . - . gene_id "RvY_14047"; transcript_id "RvY_14047.1"; Scaffold009 rebuild exon 1826015 1826109 . - . gene_id "RvY_14047"; transcript_id "RvY_14047.1"; Scaffold009 rebuild exon 1826271 1826373 . - . gene_id "RvY_14047"; transcript_id "RvY_14047.1"; Scaffold009 rebuild transcript 1826947 1827656 . - . gene_id "RvY_14048"; transcript_id "RvY_14048.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold009 rebuild exon 1826947 1827392 . - . gene_id "RvY_14048"; transcript_id "RvY_14048.1"; Scaffold009 rebuild exon 1827467 1827656 . - . gene_id "RvY_14048"; transcript_id "RvY_14048.1"; Scaffold009 rebuild transcript 1827865 1828815 . - . gene_id "RvY_14049"; transcript_id "RvY_14049.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1827865 1827951 . - . gene_id "RvY_14049"; transcript_id "RvY_14049.1"; Scaffold009 rebuild exon 1828035 1828377 . - . gene_id "RvY_14049"; transcript_id "RvY_14049.1"; Scaffold009 rebuild exon 1828637 1828815 . - . gene_id "RvY_14049"; transcript_id "RvY_14049.1"; Scaffold009 rebuild transcript 1829634 1830930 . - . gene_id "RvY_14050"; transcript_id "RvY_14050.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1829634 1829995 . - . gene_id "RvY_14050"; transcript_id "RvY_14050.1"; Scaffold009 rebuild exon 1830888 1830930 . - . gene_id "RvY_14050"; transcript_id "RvY_14050.1"; Scaffold009 rebuild transcript 1831588 1832121 . + . gene_id "RvY_14051"; transcript_id "RvY_14051.1"; gene_name "COG5216"; annotation "hypothetical protein."; Pfam "[zf-CSL] CSL zinc finger"; CDD "Uncharacterized conserved protein [Function unknown]"; KO "K15455"; similar_genes "DPH3_DROME(e-value:3.3e-20;bit-score:96.0)"; Scaffold009 rebuild exon 1831588 1831652 . + . gene_id "RvY_14051"; transcript_id "RvY_14051.1"; Scaffold009 rebuild exon 1831742 1831781 . + . gene_id "RvY_14051"; transcript_id "RvY_14051.1"; Scaffold009 rebuild exon 1831913 1831987 . + . gene_id "RvY_14051"; transcript_id "RvY_14051.1"; Scaffold009 rebuild exon 1832059 1832121 . + . gene_id "RvY_14051"; transcript_id "RvY_14051.1"; Scaffold009 rebuild transcript 1832444 1834566 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; annotation "hypothetical protein."; Pfam "[Peptidase_M48] Peptidase family M48"; Scaffold009 rebuild exon 1832444 1832587 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1832658 1832888 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1832953 1833033 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1833088 1833135 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1833210 1833317 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1833390 1833493 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1833558 1833627 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1833684 1833823 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1833942 1834021 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1834103 1834333 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild exon 1834490 1834566 . - . gene_id "RvY_14052"; transcript_id "RvY_14052.1"; Scaffold009 rebuild transcript 1833958 1834638 . + . gene_id "RvY_14053"; transcript_id "RvY_14053.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1833958 1834215 . + . gene_id "RvY_14053"; transcript_id "RvY_14053.1"; Scaffold009 rebuild exon 1834495 1834638 . + . gene_id "RvY_14053"; transcript_id "RvY_14053.1"; Scaffold009 rebuild transcript 1834926 1836267 . + . gene_id "RvY_14054"; transcript_id "RvY_14054.1"; gene_name "UBLE1A"; annotation "ubiquitin-like 1-activating enzyme E1 A [EC:6.3.2.19]"; Pfam "[ThiF] ThiF family"; CDD "Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain."; EC "EC6.3.2.19"; KO "K10684"; similar_genes "SAE1_DANRE(e-value:3.9e-08;bit-score:56.0)"; Scaffold009 rebuild exon 1834926 1835565 . + . gene_id "RvY_14054"; transcript_id "RvY_14054.1"; Scaffold009 rebuild exon 1835726 1836267 . + . gene_id "RvY_14054"; transcript_id "RvY_14054.1"; Scaffold009 rebuild transcript 1836649 1838066 . - . gene_id "RvY_14055"; transcript_id "RvY_14055.1"; gene_name "COPS4"; annotation "COP9 signalosome complex subunit 4"; Pfam "[PCI]"; KO "K12178"; similar_genes "CSN4_PIG(e-value:1.4e-16;bit-score:84.0)"; Scaffold009 rebuild exon 1836649 1837242 . - . gene_id "RvY_14055"; transcript_id "RvY_14055.1"; Scaffold009 rebuild exon 1837446 1838066 . - . gene_id "RvY_14055"; transcript_id "RvY_14055.1"; Scaffold009 rebuild transcript 1838495 1841289 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; gene_name "MUS81"; annotation "crossover junction endonuclease MUS81 [EC:3.1.22.-]"; Pfam "[ERCC4]"; CDD "ERCC4-type nuclease [DNA replication, recombination, and repair]"; EC "EC3.1.22.-"; KO "K08991"; similar_genes "MUS81_XENTR(e-value:2.6e-09;bit-score:60.0)"; Scaffold009 rebuild exon 1838495 1838620 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1838684 1838756 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1839053 1839118 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1839274 1839564 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1839642 1839876 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1839946 1840171 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1840384 1840596 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1840666 1840794 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1840883 1840986 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1841064 1841147 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild exon 1841223 1841289 . + . gene_id "RvY_14056"; transcript_id "RvY_14056.1"; Scaffold009 rebuild transcript 1841602 1842875 . - . gene_id "RvY_14057"; transcript_id "RvY_14057.1"; gene_name "NCBP2"; annotation "Nuclear cap-binding protein subunit 2"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The Scaffold009 rebuild exon 1841602 1842265 . - . gene_id "RvY_14057"; transcript_id "RvY_14057.1"; Scaffold009 rebuild exon 1842556 1842737 . - . gene_id "RvY_14057"; transcript_id "RvY_14057.1"; Scaffold009 rebuild exon 1842819 1842875 . - . gene_id "RvY_14057"; transcript_id "RvY_14057.1"; Scaffold009 rebuild transcript 1843074 1843256 . - . gene_id "RvY_14058"; transcript_id "RvY_14058.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1843074 1843256 . - . gene_id "RvY_14058"; transcript_id "RvY_14058.1"; Scaffold009 rebuild transcript 1846190 1850314 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold009 rebuild exon 1846190 1846331 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1846440 1846660 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1846731 1846856 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1846923 1847089 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1847186 1847337 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1847413 1847550 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1847638 1847936 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1848168 1848389 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1848593 1848779 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1848834 1849061 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1849137 1849445 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild exon 1849683 1850314 . - . gene_id "RvY_14059"; transcript_id "RvY_14059.1"; Scaffold009 rebuild transcript 1852028 1855853 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold009 rebuild exon 1852028 1852157 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1852370 1852897 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1852961 1853046 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1853444 1853653 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1853861 1854407 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1854474 1854558 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1854866 1855053 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1855152 1855297 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1855537 1855716 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild exon 1855785 1855853 . + . gene_id "RvY_14060"; transcript_id "RvY_14060.1"; Scaffold009 rebuild transcript 1856397 1858225 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1856397 1856563 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; Scaffold009 rebuild exon 1856785 1856933 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; Scaffold009 rebuild exon 1857133 1857248 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; Scaffold009 rebuild exon 1857326 1857515 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; Scaffold009 rebuild exon 1857727 1857816 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; Scaffold009 rebuild exon 1857903 1858225 . + . gene_id "RvY_14061"; transcript_id "RvY_14061.1"; Scaffold009 rebuild transcript 1858315 1861293 . - . gene_id "RvY_14062"; transcript_id "RvY_14062.1"; gene_name "APC5"; annotation "anaphase-promoting complex subunit 5"; Pfam "[Apc5] Anaphase-promoting complex subunit 5|[TPR_12] Tetratricopeptide repeat"; KO "K03352"; Scaffold009 rebuild exon 1858315 1858733 . - . gene_id "RvY_14062"; transcript_id "RvY_14062.1"; Scaffold009 rebuild exon 1859016 1860104 . - . gene_id "RvY_14062"; transcript_id "RvY_14062.1"; Scaffold009 rebuild exon 1860463 1860826 . - . gene_id "RvY_14062"; transcript_id "RvY_14062.1"; Scaffold009 rebuild exon 1860889 1861293 . - . gene_id "RvY_14062"; transcript_id "RvY_14062.1"; Scaffold009 rebuild transcript 1862615 1866227 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; gene_name "(1,2)RPO41(3)POLRMT"; annotation "(1,2)hypothetical protein.(3)putative DNA-directed RNA polymerase, mitochondrial"; Pfam "(3)[RNA_pol] DNA-dependent RNA polymerase|(1,2)[PPR_2] PPR repeat family"; CDD "Mitochondrial DNA-directed RNA polymerase [Transcription]"; EC "(3)EC2.7.7.6"; KO "(3)K10908"; similar_genes "(3)RPOM_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold009 rebuild exon 1862615 1862738 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1862806 1862979 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1863048 1863451 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1863621 1863743 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1863830 1863988 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1864150 1864638 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1864699 1864830 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1864933 1865052 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1865117 1865302 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1865499 1865634 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1865696 1865832 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1865904 1866004 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild exon 1866074 1866227 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.1"; Scaffold009 rebuild transcript 1862615 1865666 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; gene_name "(1,2)RPO41(3)POLRMT"; annotation "(1,2)hypothetical protein.(3)putative DNA-directed RNA polymerase, mitochondrial"; Pfam "(3)[RNA_pol] DNA-dependent RNA polymerase|(1,2)[PPR_2] PPR repeat family"; CDD "Mitochondrial DNA-directed RNA polymerase [Transcription]"; EC "(3)EC2.7.7.6"; KO "(3)K10908"; similar_genes "(3)RPOM_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold009 rebuild exon 1862615 1862738 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1862806 1862979 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1863048 1863451 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1863621 1863743 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1863830 1863988 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1864150 1864638 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1864699 1864830 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1864933 1865052 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1865117 1865302 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild exon 1865499 1865666 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.2"; Scaffold009 rebuild transcript 1865680 1868618 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; gene_name "(1,2)RPO41(3)POLRMT"; annotation "(1,2)hypothetical protein.(3)putative DNA-directed RNA polymerase, mitochondrial"; Pfam "(3)[RNA_pol] DNA-dependent RNA polymerase|(1,2)[PPR_2] PPR repeat family"; CDD "Mitochondrial DNA-directed RNA polymerase [Transcription]"; EC "(3)EC2.7.7.6"; KO "(3)K10908"; similar_genes "(3)RPOM_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold009 rebuild exon 1865680 1865832 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1865904 1866004 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1866074 1866194 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1866270 1866466 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1866528 1866606 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1866698 1866946 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1867014 1867091 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1867154 1867342 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1867403 1867557 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1867896 1868067 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1868128 1868219 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1868306 1868379 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild exon 1868569 1868618 . + . gene_id "RvY_14063"; transcript_id "RvY_14063.3"; Scaffold009 rebuild transcript 1868949 1870549 . - . gene_id "RvY_14064"; transcript_id "RvY_14064.1"; gene_name "CLYBL"; annotation "putative Citrate lyase subunit beta-like protein, mitochondrial"; Pfam "[HpcH_HpaI] HpcH/HpaI aldolase/citrate lyase family"; CDD "Citrate lyase beta subunit [Carbohydrate transport and metabolism]"; EC "EC4.1.-.-"; KO "K11390"; similar_genes "CLYBL_MOUSE(e-value:6.9e-29;bit-score:125.0)"; Scaffold009 rebuild exon 1868949 1869050 . - . gene_id "RvY_14064"; transcript_id "RvY_14064.1"; Scaffold009 rebuild exon 1869116 1869294 . - . gene_id "RvY_14064"; transcript_id "RvY_14064.1"; Scaffold009 rebuild exon 1869508 1870036 . - . gene_id "RvY_14064"; transcript_id "RvY_14064.1"; Scaffold009 rebuild exon 1870108 1870240 . - . gene_id "RvY_14064"; transcript_id "RvY_14064.1"; Scaffold009 rebuild exon 1870341 1870549 . - . gene_id "RvY_14064"; transcript_id "RvY_14064.1"; Scaffold009 rebuild transcript 1872153 1872523 . + . gene_id "RvY_14065"; transcript_id "RvY_14065.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1872153 1872272 . + . gene_id "RvY_14065"; transcript_id "RvY_14065.1"; Scaffold009 rebuild exon 1872410 1872523 . + . gene_id "RvY_14065"; transcript_id "RvY_14065.1"; Scaffold009 rebuild transcript 1872714 1873405 . - . gene_id "RvY_14066"; transcript_id "RvY_14066.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1872714 1873130 . - . gene_id "RvY_14066"; transcript_id "RvY_14066.1"; Scaffold009 rebuild exon 1873172 1873405 . - . gene_id "RvY_14066"; transcript_id "RvY_14066.1"; Scaffold009 rebuild transcript 1873478 1874679 . - . gene_id "RvY_14067"; transcript_id "RvY_14067.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1873478 1873714 . - . gene_id "RvY_14067"; transcript_id "RvY_14067.1"; Scaffold009 rebuild exon 1874059 1874195 . - . gene_id "RvY_14067"; transcript_id "RvY_14067.1"; Scaffold009 rebuild exon 1874493 1874679 . - . gene_id "RvY_14067"; transcript_id "RvY_14067.1"; Scaffold009 rebuild transcript 1874768 1876112 . - . gene_id "RvY_14068"; transcript_id "RvY_14068.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1874768 1875272 . - . gene_id "RvY_14068"; transcript_id "RvY_14068.1"; Scaffold009 rebuild exon 1875622 1875780 . - . gene_id "RvY_14068"; transcript_id "RvY_14068.1"; Scaffold009 rebuild exon 1875859 1876112 . - . gene_id "RvY_14068"; transcript_id "RvY_14068.1"; Scaffold009 rebuild transcript 1876129 1876449 . - . gene_id "RvY_14069"; transcript_id "RvY_14069.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1876129 1876449 . - . gene_id "RvY_14069"; transcript_id "RvY_14069.1"; Scaffold009 rebuild transcript 1877119 1879186 . + . gene_id "RvY_14070"; transcript_id "RvY_14070.1"; gene_name "CNP"; annotation "2',3'-cyclic-nucleotide 3'-phosphodiesterase [EC:3.1.4.37]"; Pfam "[CNPase] 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)|[AAA_33] AAA domain"; EC "EC3.1.4.37"; KO "K01121"; Scaffold009 rebuild exon 1877119 1877664 . + . gene_id "RvY_14070"; transcript_id "RvY_14070.1"; Scaffold009 rebuild exon 1877761 1877848 . + . gene_id "RvY_14070"; transcript_id "RvY_14070.1"; Scaffold009 rebuild exon 1877980 1878336 . + . gene_id "RvY_14070"; transcript_id "RvY_14070.1"; Scaffold009 rebuild exon 1878433 1878687 . + . gene_id "RvY_14070"; transcript_id "RvY_14070.1"; Scaffold009 rebuild exon 1878894 1879186 . + . gene_id "RvY_14070"; transcript_id "RvY_14070.1"; Scaffold009 rebuild transcript 1880014 1881602 . - . gene_id "RvY_14071"; transcript_id "RvY_14071.1"; gene_name "TRX_family"; annotation "hypothetical protein."; Pfam "[Thioredoxin]"; CDD "TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an Scaffold009 rebuild exon 1880014 1880276 . - . gene_id "RvY_14071"; transcript_id "RvY_14071.1"; Scaffold009 rebuild exon 1880352 1880485 . - . gene_id "RvY_14071"; transcript_id "RvY_14071.1"; Scaffold009 rebuild exon 1880598 1880877 . - . gene_id "RvY_14071"; transcript_id "RvY_14071.1"; Scaffold009 rebuild exon 1881061 1881480 . - . gene_id "RvY_14071"; transcript_id "RvY_14071.1"; Scaffold009 rebuild exon 1881560 1881602 . - . gene_id "RvY_14071"; transcript_id "RvY_14071.1"; Scaffold009 rebuild transcript 1882151 1883031 . + . gene_id "RvY_14072"; transcript_id "RvY_14072.1"; gene_name "SDHD"; annotation "succinate dehydrogenase (ubiquinone) membrane anchor subunit [EC:1.3.5.1]"; Pfam "[CybS]"; EC "EC1.3.5.1"; KO "K00237"; Scaffold009 rebuild exon 1882151 1882172 . + . gene_id "RvY_14072"; transcript_id "RvY_14072.1"; Scaffold009 rebuild exon 1882256 1882372 . + . gene_id "RvY_14072"; transcript_id "RvY_14072.1"; Scaffold009 rebuild exon 1882443 1882632 . + . gene_id "RvY_14072"; transcript_id "RvY_14072.1"; Scaffold009 rebuild exon 1882854 1883031 . + . gene_id "RvY_14072"; transcript_id "RvY_14072.1"; Scaffold009 rebuild transcript 1883321 1884767 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; annotation "(1,2)putative Phytanoyl-CoA dioxygenase domain-containing protein 1(3)hypothetical protein."; Pfam "[PhyH] Phytanoyl-CoA dioxygenase (PhyH)"; EC "EC1.-.-.-"; similar_genes "(1,2)PHYD1_MOUSE(e-value:2.9e-38;bit-score:156.0)(3)PHYD1_CAEBR(e-value:5.8e-07;bit-score:52.0)"; Scaffold009 rebuild exon 1883321 1883378 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; Scaffold009 rebuild exon 1883490 1883736 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; Scaffold009 rebuild exon 1883940 1884083 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; Scaffold009 rebuild exon 1884153 1884284 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; Scaffold009 rebuild exon 1884410 1884677 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; Scaffold009 rebuild exon 1884738 1884767 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.1"; Scaffold009 rebuild transcript 1883835 1884767 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.2"; annotation "(1,2)putative Phytanoyl-CoA dioxygenase domain-containing protein 1(3)hypothetical protein."; Pfam "[PhyH] Phytanoyl-CoA dioxygenase (PhyH)"; EC "EC1.-.-.-"; similar_genes "(1,2)PHYD1_MOUSE(e-value:2.9e-38;bit-score:156.0)(3)PHYD1_CAEBR(e-value:5.8e-07;bit-score:52.0)"; Scaffold009 rebuild exon 1883835 1883851 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.2"; Scaffold009 rebuild exon 1883940 1884083 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.2"; Scaffold009 rebuild exon 1884153 1884284 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.2"; Scaffold009 rebuild exon 1884410 1884677 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.2"; Scaffold009 rebuild exon 1884738 1884767 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.2"; Scaffold009 rebuild transcript 1884066 1884767 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.3"; annotation "(1,2)putative Phytanoyl-CoA dioxygenase domain-containing protein 1(3)hypothetical protein."; Pfam "[PhyH] Phytanoyl-CoA dioxygenase (PhyH)"; EC "EC1.-.-.-"; similar_genes "(1,2)PHYD1_MOUSE(e-value:2.9e-38;bit-score:156.0)(3)PHYD1_CAEBR(e-value:5.8e-07;bit-score:52.0)"; Scaffold009 rebuild exon 1884066 1884083 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.3"; Scaffold009 rebuild exon 1884153 1884677 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.3"; Scaffold009 rebuild exon 1884738 1884767 . - . gene_id "RvY_14073"; transcript_id "RvY_14073.3"; Scaffold009 rebuild transcript 1885487 1888861 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; gene_name "SSRP1"; annotation "putative FACT complex subunit SSRP1"; Pfam "[DUF1898]|[HMG_box] HMG (high mobility group) box|[SSrecog] Structure-specific recognition protein (SSRP1)|[Rtt106] Histone chaperone Rttp106-like"; CDD "Structure-specific recognition protein (SSRP1). SSRP1 has been implicated in transcriptional initiation and elongation and in DNA replication and repair."; KO "K09272"; similar_genes "SSRP1_CHICK(e-value:5.1e-42;bit-score:169.0)"; Scaffold009 rebuild exon 1885487 1885525 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1885605 1885841 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1885927 1886100 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1886303 1886508 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1886593 1886713 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1886793 1886865 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1886934 1887114 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1887213 1887379 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1887453 1887559 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1887628 1887858 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1888044 1888231 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1888320 1888425 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1888504 1888689 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild exon 1888805 1888861 . - . gene_id "RvY_14074"; transcript_id "RvY_14074.1"; Scaffold009 rebuild transcript 1890340 1895832 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; gene_name "eIF-3A"; annotation "putative Eukaryotic translation initiation factor 3 subunit A"; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; KO "K03254"; similar_genes "EIF3A_DANRE(e-value:1.1e-31;bit-score:134.0)"; Scaffold009 rebuild exon 1890340 1890388 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1890461 1890812 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1890877 1891099 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1891318 1891461 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1891541 1891749 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1892006 1892177 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1892241 1892441 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1892799 1892915 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1892977 1893174 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1893458 1893799 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1894080 1894307 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1894497 1894773 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1894830 1894989 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1895259 1895473 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1895539 1895586 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild exon 1895657 1895832 . + . gene_id "RvY_14075"; transcript_id "RvY_14075.1"; Scaffold009 rebuild transcript 1896154 1898266 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; annotation "hypothetical protein."; Scaffold009 rebuild exon 1896154 1896383 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; Scaffold009 rebuild exon 1896601 1896690 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; Scaffold009 rebuild exon 1896780 1897221 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; Scaffold009 rebuild exon 1897479 1897710 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; Scaffold009 rebuild exon 1897775 1898087 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; Scaffold009 rebuild exon 1898158 1898266 . - . gene_id "RvY_14076"; transcript_id "RvY_14076.1"; Scaffold009 rebuild transcript 1900968 1903716 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; gene_name "SPPL2B"; annotation "signal peptide peptidase-like 2B [EC:3.4.23.-]"; Pfam "[Peptidase_A22B] Signal peptide peptidase"; CDD "Signal peptide peptidase. The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080."; EC "EC3.4.23.-"; KO "K09597"; similar_genes "PSL1_MOUSE(e-value:4.6e-11;bit-score:66.0)"; Scaffold009 rebuild exon 1900968 1901042 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1901122 1901259 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1901357 1901536 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1901814 1902043 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1902101 1902263 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1902322 1902352 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1902429 1902525 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1902740 1903287 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1903360 1903514 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold009 rebuild exon 1903582 1903716 . + . gene_id "RvY_14077"; transcript_id "RvY_14077.1"; Scaffold010 rebuild transcript 142 1113 . - . gene_id "RvY_14078"; transcript_id "RvY_14078.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 142 377 . - . gene_id "RvY_14078"; transcript_id "RvY_14078.1"; Scaffold010 rebuild exon 750 1001 . - . gene_id "RvY_14078"; transcript_id "RvY_14078.1"; Scaffold010 rebuild exon 1086 1113 . - . gene_id "RvY_14078"; transcript_id "RvY_14078.1"; Scaffold010 rebuild transcript 3622 3828 . - . gene_id "RvY_14079"; transcript_id "RvY_14079.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 3622 3828 . - . gene_id "RvY_14079"; transcript_id "RvY_14079.1"; Scaffold010 rebuild transcript 4071 4652 . - . gene_id "RvY_14080"; transcript_id "RvY_14080.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 4071 4652 . - . gene_id "RvY_14080"; transcript_id "RvY_14080.1"; Scaffold010 rebuild transcript 8694 9500 . - . gene_id "RvY_14081"; transcript_id "RvY_14081.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)"; Scaffold010 rebuild exon 8694 8997 . - . gene_id "RvY_14081"; transcript_id "RvY_14081.1"; Scaffold010 rebuild exon 9412 9500 . - . gene_id "RvY_14081"; transcript_id "RvY_14081.1"; Scaffold010 rebuild transcript 10528 10743 . + . gene_id "RvY_14082"; transcript_id "RvY_14082.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 10528 10743 . + . gene_id "RvY_14082"; transcript_id "RvY_14082.1"; Scaffold010 rebuild transcript 28706 29643 . - . gene_id "RvY_14083"; transcript_id "RvY_14083.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 28706 28942 . - . gene_id "RvY_14083"; transcript_id "RvY_14083.1"; Scaffold010 rebuild exon 29191 29643 . - . gene_id "RvY_14083"; transcript_id "RvY_14083.1"; Scaffold010 rebuild transcript 31429 31638 . - . gene_id "RvY_14085"; transcript_id "RvY_14085.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 31429 31638 . - . gene_id "RvY_14085"; transcript_id "RvY_14085.1"; Scaffold010 rebuild transcript 32744 33079 . + . gene_id "RvY_14086"; transcript_id "RvY_14086.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 32744 33079 . + . gene_id "RvY_14086"; transcript_id "RvY_14086.1"; Scaffold010 rebuild transcript 33507 38403 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; similar_genes "(1)SMC5_XENLA(e-value:1.4e-16;bit-score:84.0)"; Scaffold010 rebuild exon 33507 33659 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 33739 33840 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 34068 34214 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 34274 34645 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 35134 35388 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 35463 35610 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 35874 36181 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 36308 36521 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 36764 36975 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 37251 37423 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 37488 37980 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild exon 38215 38403 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.1"; Scaffold010 rebuild transcript 35415 38403 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; gene_name "Smc"; annotation "hypothetical protein."; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain"; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; similar_genes "(1)SMC5_XENLA(e-value:1.4e-16;bit-score:84.0)"; Scaffold010 rebuild exon 35415 35610 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild exon 35874 36181 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild exon 36308 36521 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild exon 36764 36975 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild exon 37251 37423 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild exon 37488 37980 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild exon 38215 38403 . - . gene_id "RvY_14087"; transcript_id "RvY_14087.2"; Scaffold010 rebuild transcript 38439 39312 . - . gene_id "RvY_14088"; transcript_id "RvY_14088.1"; annotation "hypothetical protein."; Pfam "[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_23] AAA domain|[AAA_15] AAA ATPase domain"; Scaffold010 rebuild exon 38439 38736 . - . gene_id "RvY_14088"; transcript_id "RvY_14088.1"; Scaffold010 rebuild exon 38879 39118 . - . gene_id "RvY_14088"; transcript_id "RvY_14088.1"; Scaffold010 rebuild exon 39176 39312 . - . gene_id "RvY_14088"; transcript_id "RvY_14088.1"; Scaffold010 rebuild transcript 42015 44413 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 42015 42618 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.1"; Scaffold010 rebuild exon 42682 43996 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.1"; Scaffold010 rebuild exon 44329 44413 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.1"; Scaffold010 rebuild transcript 42015 44006 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 42015 42618 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.2"; Scaffold010 rebuild exon 42682 44006 . + . gene_id "RvY_14089"; transcript_id "RvY_14089.2"; Scaffold010 rebuild transcript 44325 44501 . - . gene_id "RvY_14090"; transcript_id "RvY_14090.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 44325 44501 . - . gene_id "RvY_14090"; transcript_id "RvY_14090.1"; Scaffold010 rebuild transcript 45063 49415 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; gene_name "GAS2"; annotation "hypothetical protein."; Pfam "[CH] Calponin homology (CH) domain|[GAS2] Growth-Arrest-Specific Protein 2 Domain"; CDD "Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain"; similar_genes "GA2L1_MOUSE(e-value:9.5e-18;bit-score:88.0)"; Scaffold010 rebuild exon 45063 45876 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; Scaffold010 rebuild exon 45986 46145 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; Scaffold010 rebuild exon 46523 46586 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; Scaffold010 rebuild exon 46664 46771 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; Scaffold010 rebuild exon 48437 48761 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; Scaffold010 rebuild exon 49021 49415 . - . gene_id "RvY_14091"; transcript_id "RvY_14091.1"; Scaffold010 rebuild transcript 51026 54339 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; annotation "hypothetical protein."; Pfam "[UFD1] Ubiquitin fusion degradation protein UFD1"; KO "K14016"; similar_genes "UFD1_DICDI(e-value:7.5e-22;bit-score:102.0)"; Scaffold010 rebuild exon 51026 51127 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 51190 51432 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 51524 51571 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 51654 51754 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 51932 52154 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 52217 52516 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 53895 54063 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild exon 54191 54339 . - . gene_id "RvY_14092"; transcript_id "RvY_14092.1"; Scaffold010 rebuild transcript 55866 56528 . + . gene_id "RvY_14093"; transcript_id "RvY_14093.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 55866 56528 . + . gene_id "RvY_14093"; transcript_id "RvY_14093.1"; Scaffold010 rebuild transcript 62496 63188 . + . gene_id "RvY_14094"; transcript_id "RvY_14094.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 62496 63188 . + . gene_id "RvY_14094"; transcript_id "RvY_14094.1"; Scaffold010 rebuild transcript 63741 64226 . - . gene_id "RvY_14095"; transcript_id "RvY_14095.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 63741 64226 . - . gene_id "RvY_14095"; transcript_id "RvY_14095.1"; Scaffold010 rebuild transcript 64732 65507 . - . gene_id "RvY_14096"; transcript_id "RvY_14096.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 64732 64914 . - . gene_id "RvY_14096"; transcript_id "RvY_14096.1"; Scaffold010 rebuild exon 64995 65204 . - . gene_id "RvY_14096"; transcript_id "RvY_14096.1"; Scaffold010 rebuild exon 65319 65507 . - . gene_id "RvY_14096"; transcript_id "RvY_14096.1"; Scaffold010 rebuild transcript 65549 66352 . - . gene_id "RvY_14097"; transcript_id "RvY_14097.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold010 rebuild exon 65549 65791 . - . gene_id "RvY_14097"; transcript_id "RvY_14097.1"; Scaffold010 rebuild exon 65981 66352 . - . gene_id "RvY_14097"; transcript_id "RvY_14097.1"; Scaffold010 rebuild transcript 67755 67919 . - . gene_id "RvY_14098"; transcript_id "RvY_14098.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 67755 67919 . - . gene_id "RvY_14098"; transcript_id "RvY_14098.1"; Scaffold010 rebuild transcript 69595 71248 . + . gene_id "RvY_14099"; transcript_id "RvY_14099.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold010 rebuild exon 69595 70158 . + . gene_id "RvY_14099"; transcript_id "RvY_14099.1"; Scaffold010 rebuild exon 70252 70436 . + . gene_id "RvY_14099"; transcript_id "RvY_14099.1"; Scaffold010 rebuild exon 70969 71248 . + . gene_id "RvY_14099"; transcript_id "RvY_14099.1"; Scaffold010 rebuild transcript 71651 72179 . - . gene_id "RvY_14100"; transcript_id "RvY_14100.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 71651 71814 . - . gene_id "RvY_14100"; transcript_id "RvY_14100.1"; Scaffold010 rebuild exon 71905 72036 . - . gene_id "RvY_14100"; transcript_id "RvY_14100.1"; Scaffold010 rebuild exon 72125 72179 . - . gene_id "RvY_14100"; transcript_id "RvY_14100.1"; Scaffold010 rebuild transcript 72948 73280 . + . gene_id "RvY_14101"; transcript_id "RvY_14101.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold010 rebuild exon 72948 73280 . + . gene_id "RvY_14101"; transcript_id "RvY_14101.1"; Scaffold010 rebuild transcript 75019 75867 . + . gene_id "RvY_14102"; transcript_id "RvY_14102.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 75019 75867 . + . gene_id "RvY_14102"; transcript_id "RvY_14102.1"; Scaffold010 rebuild transcript 78129 78458 . + . gene_id "RvY_14103"; transcript_id "RvY_14103.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 78129 78458 . + . gene_id "RvY_14103"; transcript_id "RvY_14103.1"; Scaffold010 rebuild transcript 85273 85806 . - . gene_id "RvY_14104"; transcript_id "RvY_14104.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 85273 85806 . - . gene_id "RvY_14104"; transcript_id "RvY_14104.1"; Scaffold010 rebuild transcript 87267 88099 . - . gene_id "RvY_14105"; transcript_id "RvY_14105.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 87267 87682 . - . gene_id "RvY_14105"; transcript_id "RvY_14105.1"; Scaffold010 rebuild exon 87754 88099 . - . gene_id "RvY_14105"; transcript_id "RvY_14105.1"; Scaffold010 rebuild transcript 88864 89963 . + . gene_id "RvY_14106"; transcript_id "RvY_14106.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 88864 88975 . + . gene_id "RvY_14106"; transcript_id "RvY_14106.1"; Scaffold010 rebuild exon 89065 89255 . + . gene_id "RvY_14106"; transcript_id "RvY_14106.1"; Scaffold010 rebuild exon 89817 89963 . + . gene_id "RvY_14106"; transcript_id "RvY_14106.1"; Scaffold010 rebuild transcript 90846 91154 . - . gene_id "RvY_14107"; transcript_id "RvY_14107.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 90846 91154 . - . gene_id "RvY_14107"; transcript_id "RvY_14107.1"; Scaffold010 rebuild transcript 91919 95194 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; product "MRE11B"; gene_name "MRE11"; annotation "MRE11B | putative Double-strand break repair protein MRE11"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[Mre11_DNA_bind] Mre11 DNA-binding presumed domain|[Metallophos_2] Calcineurin-like phosphoesterase superfamily domain"; CDD "DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria."; KO "K10865"; similar_genes "MRE11_XENLA(e-value:2.1e-32;bit-score:137.0)"; Scaffold010 rebuild exon 91919 92221 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; Scaffold010 rebuild exon 92546 92800 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; Scaffold010 rebuild exon 93060 93655 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; Scaffold010 rebuild exon 93951 94274 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; Scaffold010 rebuild exon 94364 94628 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; Scaffold010 rebuild exon 94832 95194 . - . gene_id "RvY_14108"; transcript_id "RvY_14108.1"; Scaffold010 rebuild transcript 95856 97124 . + . gene_id "RvY_14109"; transcript_id "RvY_14109.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 95856 96009 . + . gene_id "RvY_14109"; transcript_id "RvY_14109.1"; Scaffold010 rebuild exon 96145 96220 . + . gene_id "RvY_14109"; transcript_id "RvY_14109.1"; Scaffold010 rebuild exon 96282 96354 . + . gene_id "RvY_14109"; transcript_id "RvY_14109.1"; Scaffold010 rebuild exon 96557 96932 . + . gene_id "RvY_14109"; transcript_id "RvY_14109.1"; Scaffold010 rebuild exon 97006 97124 . + . gene_id "RvY_14109"; transcript_id "RvY_14109.1"; Scaffold010 rebuild transcript 97685 99000 . - . gene_id "RvY_14110"; transcript_id "RvY_14110.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 97685 97814 . - . gene_id "RvY_14110"; transcript_id "RvY_14110.1"; Scaffold010 rebuild exon 97911 98451 . - . gene_id "RvY_14110"; transcript_id "RvY_14110.1"; Scaffold010 rebuild exon 98607 98815 . - . gene_id "RvY_14110"; transcript_id "RvY_14110.1"; Scaffold010 rebuild exon 98948 99000 . - . gene_id "RvY_14110"; transcript_id "RvY_14110.1"; Scaffold010 rebuild transcript 103743 105723 . + . gene_id "RvY_14111"; transcript_id "RvY_14111.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 103743 103850 . + . gene_id "RvY_14111"; transcript_id "RvY_14111.1"; Scaffold010 rebuild exon 103919 104084 . + . gene_id "RvY_14111"; transcript_id "RvY_14111.1"; Scaffold010 rebuild exon 104846 105215 . + . gene_id "RvY_14111"; transcript_id "RvY_14111.1"; Scaffold010 rebuild exon 105276 105393 . + . gene_id "RvY_14111"; transcript_id "RvY_14111.1"; Scaffold010 rebuild exon 105463 105723 . + . gene_id "RvY_14111"; transcript_id "RvY_14111.1"; Scaffold010 rebuild transcript 105931 106835 . - . gene_id "RvY_14112"; transcript_id "RvY_14112.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 105931 106167 . - . gene_id "RvY_14112"; transcript_id "RvY_14112.1"; Scaffold010 rebuild exon 106416 106835 . - . gene_id "RvY_14112"; transcript_id "RvY_14112.1"; Scaffold010 rebuild transcript 107464 109758 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.1"; product "MRE11A"; gene_name "mre11"; annotation "MRE11A | putative Double-strand break repair protein MRE11"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[Mre11_DNA_bind] Mre11 DNA-binding presumed domain"; CDD "DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria."; similar_genes "MRE11_XENLA(e-value:1.4e-31;bit-score:134.0)"; Scaffold010 rebuild exon 107464 107676 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.1"; Scaffold010 rebuild exon 108206 108801 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.1"; Scaffold010 rebuild exon 109097 109420 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.1"; Scaffold010 rebuild exon 109524 109758 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.1"; Scaffold010 rebuild transcript 107863 109758 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.2"; product "MRE11A"; gene_name "mre11"; annotation "MRE11A | putative Double-strand break repair protein MRE11"; Pfam "[Metallophos] Calcineurin-like phosphoesterase|[Mre11_DNA_bind] Mre11 DNA-binding presumed domain"; CDD "DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria."; similar_genes "MRE11_XENLA(e-value:1.4e-31;bit-score:134.0)"; Scaffold010 rebuild exon 107863 107946 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.2"; Scaffold010 rebuild exon 108206 108801 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.2"; Scaffold010 rebuild exon 109097 109420 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.2"; Scaffold010 rebuild exon 109524 109758 . - . gene_id "RvY_14113"; transcript_id "RvY_14113.2"; Scaffold010 rebuild transcript 109963 110682 . - . gene_id "RvY_14114"; transcript_id "RvY_14114.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 109963 110682 . - . gene_id "RvY_14114"; transcript_id "RvY_14114.1"; Scaffold010 rebuild transcript 110723 111049 . + . gene_id "RvY_14115"; transcript_id "RvY_14115.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 110723 110804 . + . gene_id "RvY_14115"; transcript_id "RvY_14115.1"; Scaffold010 rebuild exon 110994 111049 . + . gene_id "RvY_14115"; transcript_id "RvY_14115.1"; Scaffold010 rebuild transcript 113450 114006 . + . gene_id "RvY_14116"; transcript_id "RvY_14116.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 113450 113657 . + . gene_id "RvY_14116"; transcript_id "RvY_14116.1"; Scaffold010 rebuild exon 113861 114006 . + . gene_id "RvY_14116"; transcript_id "RvY_14116.1"; Scaffold010 rebuild transcript 115389 115849 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 115389 115569 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.1"; Scaffold010 rebuild exon 115665 115849 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.1"; Scaffold010 rebuild transcript 115193 115588 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 115193 115256 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.2"; Scaffold010 rebuild exon 115359 115588 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.2"; Scaffold010 rebuild transcript 115021 115416 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.3"; annotation "hypothetical protein."; Scaffold010 rebuild exon 115021 115256 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.3"; Scaffold010 rebuild exon 115359 115416 . + . gene_id "RvY_14117"; transcript_id "RvY_14117.3"; Scaffold010 rebuild transcript 116654 117103 . + . gene_id "RvY_14118"; transcript_id "RvY_14118.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 116654 117103 . + . gene_id "RvY_14118"; transcript_id "RvY_14118.1"; Scaffold010 rebuild transcript 116654 117074 . + . gene_id "RvY_14118"; transcript_id "RvY_14118.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 116654 116926 . + . gene_id "RvY_14118"; transcript_id "RvY_14118.2"; Scaffold010 rebuild exon 116991 117074 . + . gene_id "RvY_14118"; transcript_id "RvY_14118.2"; Scaffold010 rebuild transcript 117601 117891 . - . gene_id "RvY_14119"; transcript_id "RvY_14119.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 117601 117891 . - . gene_id "RvY_14119"; transcript_id "RvY_14119.1"; Scaffold010 rebuild transcript 120333 121424 . - . gene_id "RvY_14120"; transcript_id "RvY_14120.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 120333 121424 . - . gene_id "RvY_14120"; transcript_id "RvY_14120.1"; Scaffold010 rebuild transcript 124087 124302 . - . gene_id "RvY_14121"; transcript_id "RvY_14121.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 124087 124302 . - . gene_id "RvY_14121"; transcript_id "RvY_14121.1"; Scaffold010 rebuild transcript 125202 126518 . - . gene_id "RvY_14122"; transcript_id "RvY_14122.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 125202 125541 . - . gene_id "RvY_14122"; transcript_id "RvY_14122.1"; Scaffold010 rebuild exon 125657 126322 . - . gene_id "RvY_14122"; transcript_id "RvY_14122.1"; Scaffold010 rebuild exon 126379 126518 . - . gene_id "RvY_14122"; transcript_id "RvY_14122.1"; Scaffold010 rebuild transcript 127760 127936 . - . gene_id "RvY_14123"; transcript_id "RvY_14123.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 127760 127936 . - . gene_id "RvY_14123"; transcript_id "RvY_14123.1"; Scaffold010 rebuild transcript 128537 129982 . + . gene_id "RvY_14124"; transcript_id "RvY_14124.1"; gene_name "ARHGDI"; annotation "Rho GDP-dissociation inhibitor"; Pfam "[Rho_GDI] RHO protein GDP dissociation inhibitor"; KO "K12462"; similar_genes "GDIR3_HUMAN(e-value:3.6e-15;bit-score:79.0)"; Scaffold010 rebuild exon 128537 128807 . + . gene_id "RvY_14124"; transcript_id "RvY_14124.1"; Scaffold010 rebuild exon 128999 129136 . + . gene_id "RvY_14124"; transcript_id "RvY_14124.1"; Scaffold010 rebuild exon 129786 129982 . + . gene_id "RvY_14124"; transcript_id "RvY_14124.1"; Scaffold010 rebuild transcript 131176 134757 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.1"; gene_name "(1)LHX3_4"; annotation "(1)LIM homeobox protein 3/4(2,3)hypothetical protein."; Pfam "[LIM]|[Homeobox]"; KO "(1)K09374"; similar_genes "(1)LHX1_HUMAN(e-value:1.7e-25;bit-score:114.0)(2,3)LHX3_PIG(e-value:5.9e-09;bit-score:59.0)"; Scaffold010 rebuild exon 131176 131339 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.1"; Scaffold010 rebuild exon 131419 131621 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.1"; Scaffold010 rebuild exon 131698 131881 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.1"; Scaffold010 rebuild exon 134583 134757 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.1"; Scaffold010 rebuild transcript 130371 131208 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.2"; gene_name "(1)LHX3_4"; annotation "(1)LIM homeobox protein 3/4(2,3)hypothetical protein."; Pfam "[LIM]|[Homeobox]"; KO "(1)K09374"; similar_genes "(1)LHX1_HUMAN(e-value:1.7e-25;bit-score:114.0)(2,3)LHX3_PIG(e-value:5.9e-09;bit-score:59.0)"; Scaffold010 rebuild exon 130371 130645 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.2"; Scaffold010 rebuild exon 130943 131111 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.2"; Scaffold010 rebuild exon 131194 131208 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.2"; Scaffold010 rebuild transcript 130761 131208 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.3"; gene_name "(1)LHX3_4"; annotation "(1)LIM homeobox protein 3/4(2,3)hypothetical protein."; Pfam "[LIM]|[Homeobox]"; KO "(1)K09374"; similar_genes "(1)LHX1_HUMAN(e-value:1.7e-25;bit-score:114.0)(2,3)LHX3_PIG(e-value:5.9e-09;bit-score:59.0)"; Scaffold010 rebuild exon 130761 131111 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.3"; Scaffold010 rebuild exon 131194 131208 . - . gene_id "RvY_14125"; transcript_id "RvY_14125.3"; Scaffold010 rebuild transcript 136280 137773 . + . gene_id "RvY_14126"; transcript_id "RvY_14126.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 136280 136650 . + . gene_id "RvY_14126"; transcript_id "RvY_14126.1"; Scaffold010 rebuild exon 136737 136949 . + . gene_id "RvY_14126"; transcript_id "RvY_14126.1"; Scaffold010 rebuild exon 137170 137773 . + . gene_id "RvY_14126"; transcript_id "RvY_14126.1"; Scaffold010 rebuild transcript 140585 143555 . + . gene_id "RvY_14127"; transcript_id "RvY_14127.1"; annotation "hypothetical protein."; Pfam "[PAN_1] PAN domain"; Scaffold010 rebuild exon 140585 140846 . + . gene_id "RvY_14127"; transcript_id "RvY_14127.1"; Scaffold010 rebuild exon 140942 141126 . + . gene_id "RvY_14127"; transcript_id "RvY_14127.1"; Scaffold010 rebuild exon 141213 142542 . + . gene_id "RvY_14127"; transcript_id "RvY_14127.1"; Scaffold010 rebuild exon 142764 143087 . + . gene_id "RvY_14127"; transcript_id "RvY_14127.1"; Scaffold010 rebuild exon 143287 143555 . + . gene_id "RvY_14127"; transcript_id "RvY_14127.1"; Scaffold010 rebuild transcript 143579 146383 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; gene_name "NT_PAP_TUTase"; annotation "hypothetical protein."; Pfam "[PAP_assoc] Cid1 family poly A polymerase|[NTP_transf_2] Nucleotidyltransferase domain"; CDD "Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved."; Scaffold010 rebuild exon 143579 143996 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; Scaffold010 rebuild exon 144312 144731 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; Scaffold010 rebuild exon 145052 145269 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; Scaffold010 rebuild exon 145347 145562 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; Scaffold010 rebuild exon 145757 145984 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; Scaffold010 rebuild exon 146042 146383 . - . gene_id "RvY_14128"; transcript_id "RvY_14128.1"; Scaffold010 rebuild transcript 147363 149142 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; gene_name "RFC3_5"; annotation "putative Replication factor C subunit 3"; Pfam "[Rep_fac_C] Replication factor C C-terminal domain|[AAA] ATPase family associated with various cellular activities (AAA)|[DNA_pol3_delta2] DNA polymerase III, delta subunit"; CDD "replication factor C small subunit; Reviewed"; KO "K10756"; similar_genes "RFC3_HUMAN(e-value:2.5e-37;bit-score:153.0)"; Scaffold010 rebuild exon 147363 147545 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild exon 147609 147777 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild exon 148010 148146 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild exon 148214 148395 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild exon 148474 148571 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild exon 148782 148987 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild exon 149056 149142 . - . gene_id "RvY_14129"; transcript_id "RvY_14129.1"; Scaffold010 rebuild transcript 149479 152526 . + . gene_id "RvY_14130"; transcript_id "RvY_14130.1"; annotation "hypothetical protein."; Pfam "[Zip] ZIP Zinc transporter"; KO "K14709"; similar_genes "S39A1_DANRE(e-value:1.3e-06;bit-score:51.0)"; Scaffold010 rebuild exon 149479 150057 . + . gene_id "RvY_14130"; transcript_id "RvY_14130.1"; Scaffold010 rebuild exon 151772 152038 . + . gene_id "RvY_14130"; transcript_id "RvY_14130.1"; Scaffold010 rebuild exon 152149 152526 . + . gene_id "RvY_14130"; transcript_id "RvY_14130.1"; Scaffold010 rebuild transcript 153469 155834 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; gene_name "psd"; annotation "putative Phosphatidylserine decarboxylase proenzyme"; Pfam "[PS_Dcarbxylase] Phosphatidylserine decarboxylase"; CDD "phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl Scaffold010 rebuild exon 153469 153494 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 153657 153877 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 153944 154221 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 154285 154521 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 154685 154837 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 154920 155076 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 155348 155508 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild exon 155586 155834 . + . gene_id "RvY_14131"; transcript_id "RvY_14131.1"; Scaffold010 rebuild transcript 156658 159106 . - . gene_id "RvY_14132"; transcript_id "RvY_14132.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel"; Scaffold010 rebuild exon 156658 156896 . - . gene_id "RvY_14132"; transcript_id "RvY_14132.1"; Scaffold010 rebuild exon 157296 157697 . - . gene_id "RvY_14132"; transcript_id "RvY_14132.1"; Scaffold010 rebuild exon 158064 158373 . - . gene_id "RvY_14132"; transcript_id "RvY_14132.1"; Scaffold010 rebuild exon 158546 159106 . - . gene_id "RvY_14132"; transcript_id "RvY_14132.1"; Scaffold010 rebuild transcript 163205 165844 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[Ion_trans] Ion transport protein"; similar_genes "KCNKA_HUMAN(e-value:5.8e-07;bit-score:52.0)"; Scaffold010 rebuild exon 163205 163977 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.1"; Scaffold010 rebuild exon 164352 164523 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.1"; Scaffold010 rebuild exon 164616 164783 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.1"; Scaffold010 rebuild exon 165294 165473 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.1"; Scaffold010 rebuild exon 165662 165844 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.1"; Scaffold010 rebuild transcript 163205 164804 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.2"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[Ion_trans] Ion transport protein"; similar_genes "KCNKA_HUMAN(e-value:5.8e-07;bit-score:52.0)"; Scaffold010 rebuild exon 163205 163977 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.2"; Scaffold010 rebuild exon 164352 164523 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.2"; Scaffold010 rebuild exon 164616 164804 . - . gene_id "RvY_14133"; transcript_id "RvY_14133.2"; Scaffold010 rebuild transcript 165997 166200 . - . gene_id "RvY_14134"; transcript_id "RvY_14134.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 165997 166200 . - . gene_id "RvY_14134"; transcript_id "RvY_14134.1"; Scaffold010 rebuild transcript 169388 169711 . - . gene_id "RvY_14135"; transcript_id "RvY_14135.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 169388 169522 . - . gene_id "RvY_14135"; transcript_id "RvY_14135.1"; Scaffold010 rebuild exon 169670 169711 . - . gene_id "RvY_14135"; transcript_id "RvY_14135.1"; Scaffold010 rebuild transcript 169834 175810 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold010 rebuild exon 169834 170079 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.1"; Scaffold010 rebuild exon 170136 170730 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.1"; Scaffold010 rebuild exon 172018 172113 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.1"; Scaffold010 rebuild exon 172815 172873 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.1"; Scaffold010 rebuild exon 175601 175810 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.1"; Scaffold010 rebuild transcript 169834 175810 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold010 rebuild exon 169834 170079 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.2"; Scaffold010 rebuild exon 170136 170730 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.2"; Scaffold010 rebuild exon 172815 172873 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.2"; Scaffold010 rebuild exon 175601 175810 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.2"; Scaffold010 rebuild transcript 170121 175810 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.3"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)|(1,2)[7TM_GPCR_Srsx] Serpentine type 7TM GPCR chemoreceptor Srsx"; Scaffold010 rebuild exon 170121 170730 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.3"; Scaffold010 rebuild exon 172018 172113 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.3"; Scaffold010 rebuild exon 172815 172873 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.3"; Scaffold010 rebuild exon 175601 175810 . - . gene_id "RvY_14136"; transcript_id "RvY_14136.3"; Scaffold010 rebuild transcript 174195 174494 . + . gene_id "RvY_14137"; transcript_id "RvY_14137.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 174195 174494 . + . gene_id "RvY_14137"; transcript_id "RvY_14137.1"; Scaffold010 rebuild transcript 177890 178435 . - . gene_id "RvY_14138"; transcript_id "RvY_14138.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 177890 178435 . - . gene_id "RvY_14138"; transcript_id "RvY_14138.1"; Scaffold010 rebuild transcript 179434 179944 . + . gene_id "RvY_14139"; transcript_id "RvY_14139.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 179434 179454 . + . gene_id "RvY_14139"; transcript_id "RvY_14139.1"; Scaffold010 rebuild exon 179834 179944 . + . gene_id "RvY_14139"; transcript_id "RvY_14139.1"; Scaffold010 rebuild transcript 180567 180803 . + . gene_id "RvY_14140"; transcript_id "RvY_14140.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 180567 180803 . + . gene_id "RvY_14140"; transcript_id "RvY_14140.1"; Scaffold010 rebuild transcript 181445 181732 . + . gene_id "RvY_14141"; transcript_id "RvY_14141.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 181445 181732 . + . gene_id "RvY_14141"; transcript_id "RvY_14141.1"; Scaffold010 rebuild transcript 181784 182424 . + . gene_id "RvY_14142"; transcript_id "RvY_14142.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 181784 182185 . + . gene_id "RvY_14142"; transcript_id "RvY_14142.1"; Scaffold010 rebuild exon 182257 182424 . + . gene_id "RvY_14142"; transcript_id "RvY_14142.1"; Scaffold010 rebuild transcript 182474 182695 . + . gene_id "RvY_14143"; transcript_id "RvY_14143.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 182474 182695 . + . gene_id "RvY_14143"; transcript_id "RvY_14143.1"; Scaffold010 rebuild transcript 183653 183985 . - . gene_id "RvY_14144"; transcript_id "RvY_14144.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 183653 183756 . - . gene_id "RvY_14144"; transcript_id "RvY_14144.1"; Scaffold010 rebuild exon 183901 183985 . - . gene_id "RvY_14144"; transcript_id "RvY_14144.1"; Scaffold010 rebuild transcript 184976 185599 . + . gene_id "RvY_14145"; transcript_id "RvY_14145.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 184976 185054 . + . gene_id "RvY_14145"; transcript_id "RvY_14145.1"; Scaffold010 rebuild exon 185433 185599 . + . gene_id "RvY_14145"; transcript_id "RvY_14145.1"; Scaffold010 rebuild transcript 185993 187107 . + . gene_id "RvY_14146"; transcript_id "RvY_14146.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 185993 186247 . + . gene_id "RvY_14146"; transcript_id "RvY_14146.1"; Scaffold010 rebuild exon 186306 186488 . + . gene_id "RvY_14146"; transcript_id "RvY_14146.1"; Scaffold010 rebuild exon 186601 187107 . + . gene_id "RvY_14146"; transcript_id "RvY_14146.1"; Scaffold010 rebuild transcript 190600 192038 . + . gene_id "RvY_14147"; transcript_id "RvY_14147.1"; annotation "hypothetical protein."; Pfam "[zf-BED] BED zinc finger"; Scaffold010 rebuild exon 190600 191035 . + . gene_id "RvY_14147"; transcript_id "RvY_14147.1"; Scaffold010 rebuild exon 191180 191461 . + . gene_id "RvY_14147"; transcript_id "RvY_14147.1"; Scaffold010 rebuild exon 191536 192038 . + . gene_id "RvY_14147"; transcript_id "RvY_14147.1"; Scaffold010 rebuild transcript 192312 192515 . + . gene_id "RvY_14148"; transcript_id "RvY_14148.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 192312 192515 . + . gene_id "RvY_14148"; transcript_id "RvY_14148.1"; Scaffold010 rebuild transcript 194503 194970 . - . gene_id "RvY_14149"; transcript_id "RvY_14149.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 194503 194970 . - . gene_id "RvY_14149"; transcript_id "RvY_14149.1"; Scaffold010 rebuild transcript 195527 196975 . - . gene_id "RvY_14150"; transcript_id "RvY_14150.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 195527 195532 . - . gene_id "RvY_14150"; transcript_id "RvY_14150.1"; Scaffold010 rebuild exon 196382 196975 . - . gene_id "RvY_14150"; transcript_id "RvY_14150.1"; Scaffold010 rebuild transcript 197348 197794 . - . gene_id "RvY_14151"; transcript_id "RvY_14151.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 197348 197410 . - . gene_id "RvY_14151"; transcript_id "RvY_14151.1"; Scaffold010 rebuild exon 197576 197794 . - . gene_id "RvY_14151"; transcript_id "RvY_14151.1"; Scaffold010 rebuild transcript 199031 199216 . + . gene_id "RvY_14152"; transcript_id "RvY_14152.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 199031 199216 . + . gene_id "RvY_14152"; transcript_id "RvY_14152.1"; Scaffold010 rebuild transcript 204976 205416 . - . gene_id "RvY_14153"; transcript_id "RvY_14153.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)|[DDE_3] DDE superfamily endonuclease"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:7.3e-18;bit-score:88.0)"; Scaffold010 rebuild exon 204976 205416 . - . gene_id "RvY_14153"; transcript_id "RvY_14153.1"; Scaffold010 rebuild transcript 205423 205995 . - . gene_id "RvY_14154"; transcript_id "RvY_14154.1"; annotation "hypothetical protein."; Pfam "[Transposase_1] Transposase (partial DDE domain)"; EC "EC2.1.1.43"; similar_genes "SETMR_HUMAN(e-value:1.9e-18;bit-score:90.0)"; Scaffold010 rebuild exon 205423 205995 . - . gene_id "RvY_14154"; transcript_id "RvY_14154.1"; Scaffold010 rebuild transcript 206894 207632 . + . gene_id "RvY_14155"; transcript_id "RvY_14155.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 206894 206946 . + . gene_id "RvY_14155"; transcript_id "RvY_14155.1"; Scaffold010 rebuild exon 207326 207632 . + . gene_id "RvY_14155"; transcript_id "RvY_14155.1"; Scaffold010 rebuild transcript 208110 208304 . + . gene_id "RvY_14156"; transcript_id "RvY_14156.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 208110 208304 . + . gene_id "RvY_14156"; transcript_id "RvY_14156.1"; Scaffold010 rebuild transcript 209635 210462 . + . gene_id "RvY_14157"; transcript_id "RvY_14157.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 209635 210462 . + . gene_id "RvY_14157"; transcript_id "RvY_14157.1"; Scaffold010 rebuild transcript 215197 217223 . + . gene_id "RvY_14158"; transcript_id "RvY_14158.1"; gene_name "PSAP"; annotation "saposin"; Pfam "[SapB_2] Saposin-like type B, region 2|[SapA] Saposin A-type domain|[SapB_1] Saposin-like type B, region 1"; CDD "Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present."; KO "K12382"; Scaffold010 rebuild exon 215197 215682 . + . gene_id "RvY_14158"; transcript_id "RvY_14158.1"; Scaffold010 rebuild exon 215877 216324 . + . gene_id "RvY_14158"; transcript_id "RvY_14158.1"; Scaffold010 rebuild exon 216402 216632 . + . gene_id "RvY_14158"; transcript_id "RvY_14158.1"; Scaffold010 rebuild exon 216937 217223 . + . gene_id "RvY_14158"; transcript_id "RvY_14158.1"; Scaffold010 rebuild transcript 221483 223006 . + . gene_id "RvY_14159"; transcript_id "RvY_14159.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 221483 221552 . + . gene_id "RvY_14159"; transcript_id "RvY_14159.1"; Scaffold010 rebuild exon 221925 222083 . + . gene_id "RvY_14159"; transcript_id "RvY_14159.1"; Scaffold010 rebuild exon 222789 223006 . + . gene_id "RvY_14159"; transcript_id "RvY_14159.1"; Scaffold010 rebuild transcript 223782 226464 . - . gene_id "RvY_14160"; transcript_id "RvY_14160.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 223782 224482 . - . gene_id "RvY_14160"; transcript_id "RvY_14160.1"; Scaffold010 rebuild exon 224858 225799 . - . gene_id "RvY_14160"; transcript_id "RvY_14160.1"; Scaffold010 rebuild exon 226365 226464 . - . gene_id "RvY_14160"; transcript_id "RvY_14160.1"; Scaffold010 rebuild transcript 227144 227717 . - . gene_id "RvY_14161"; transcript_id "RvY_14161.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 227144 227301 . - . gene_id "RvY_14161"; transcript_id "RvY_14161.1"; Scaffold010 rebuild exon 227402 227545 . - . gene_id "RvY_14161"; transcript_id "RvY_14161.1"; Scaffold010 rebuild exon 227639 227717 . - . gene_id "RvY_14161"; transcript_id "RvY_14161.1"; Scaffold010 rebuild transcript 228146 230894 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; annotation "putative Transmembrane protein 184C"; Pfam "[Solute_trans_a] Organic solute transporter Ostalpha"; similar_genes "T184C_PONAB(e-value:2.8e-36;bit-score:150.0)"; Scaffold010 rebuild exon 228146 228435 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 229142 229283 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 229353 229485 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 229559 229765 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 229973 230047 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 230127 230269 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 230346 230408 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild exon 230601 230894 . - . gene_id "RvY_14162"; transcript_id "RvY_14162.1"; Scaffold010 rebuild transcript 232188 235445 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; gene_name "(1)JMJD2"; annotation "(1)Lysine-specific demethylase 4C(2)hypothetical protein."; Pfam "[JmjC] JmjC domain, hydroxylase|[JmjN] jmjN domain"; EC "(1)EC1.14.11.-"; KO "(1)K06709"; similar_genes "(1)KDM4C_MOUSE(e-value:1.3e-59;bit-score:227.0)"; Scaffold010 rebuild exon 232188 232370 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 232669 232980 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 233035 233257 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 233326 233429 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 233625 233789 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 233872 234014 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 234341 234692 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild exon 234801 235445 . + . gene_id "RvY_14163"; transcript_id "RvY_14163.1"; Scaffold010 rebuild transcript 236714 238141 . - . gene_id "RvY_14164"; transcript_id "RvY_14164.1"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[ig] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[Ig_3] Immunoglobulin domain"; Scaffold010 rebuild exon 236714 236913 . - . gene_id "RvY_14164"; transcript_id "RvY_14164.1"; Scaffold010 rebuild exon 237111 237473 . - . gene_id "RvY_14164"; transcript_id "RvY_14164.1"; Scaffold010 rebuild exon 237665 238021 . - . gene_id "RvY_14164"; transcript_id "RvY_14164.1"; Scaffold010 rebuild exon 238081 238141 . - . gene_id "RvY_14164"; transcript_id "RvY_14164.1"; Scaffold010 rebuild transcript 238922 239586 . - . gene_id "RvY_14165"; transcript_id "RvY_14165.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 238922 239057 . - . gene_id "RvY_14165"; transcript_id "RvY_14165.1"; Scaffold010 rebuild exon 239135 239586 . - . gene_id "RvY_14165"; transcript_id "RvY_14165.1"; Scaffold010 rebuild transcript 240973 242768 . - . gene_id "RvY_14166"; transcript_id "RvY_14166.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 240973 241035 . - . gene_id "RvY_14166"; transcript_id "RvY_14166.1"; Scaffold010 rebuild exon 241374 241592 . - . gene_id "RvY_14166"; transcript_id "RvY_14166.1"; Scaffold010 rebuild exon 242261 242467 . - . gene_id "RvY_14166"; transcript_id "RvY_14166.1"; Scaffold010 rebuild exon 242646 242768 . - . gene_id "RvY_14166"; transcript_id "RvY_14166.1"; Scaffold010 rebuild transcript 243264 244118 . - . gene_id "RvY_14167"; transcript_id "RvY_14167.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 243264 243589 . - . gene_id "RvY_14167"; transcript_id "RvY_14167.1"; Scaffold010 rebuild exon 243753 243984 . - . gene_id "RvY_14167"; transcript_id "RvY_14167.1"; Scaffold010 rebuild exon 244104 244118 . - . gene_id "RvY_14167"; transcript_id "RvY_14167.1"; Scaffold010 rebuild transcript 244789 247681 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; annotation "putative Coiled-coil domain-containing protein 22 homolog"; Pfam "[DUF812]"; similar_genes "CCD22_NEMVE(e-value:4.0e-27;bit-score:119.0)"; Scaffold010 rebuild exon 244789 244920 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 244995 245435 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 245682 245921 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 246081 246191 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 246448 246789 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 246868 246980 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 247093 247222 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 247381 247558 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild exon 247629 247681 . - . gene_id "RvY_14168"; transcript_id "RvY_14168.1"; Scaffold010 rebuild transcript 248090 248527 . - . gene_id "RvY_14169"; transcript_id "RvY_14169.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 248090 248527 . - . gene_id "RvY_14169"; transcript_id "RvY_14169.1"; Scaffold010 rebuild transcript 248154 248483 . - . gene_id "RvY_14169"; transcript_id "RvY_14169.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 248154 248483 . - . gene_id "RvY_14169"; transcript_id "RvY_14169.2"; Scaffold010 rebuild transcript 248124 249412 . + . gene_id "RvY_14170"; transcript_id "RvY_14170.1"; gene_name "ubiE"; annotation "hypothetical protein."; Pfam "[Ubie_methyltran] ubiE/COQ5 methyltransferase family"; CDD "ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed"; EC "EC2.1.1.-"; similar_genes "COQ5_DROME(e-value:1.4e-14;bit-score:78.0)"; Scaffold010 rebuild exon 248124 248298 . + . gene_id "RvY_14170"; transcript_id "RvY_14170.1"; Scaffold010 rebuild exon 248417 248566 . + . gene_id "RvY_14170"; transcript_id "RvY_14170.1"; Scaffold010 rebuild exon 248770 248955 . + . gene_id "RvY_14170"; transcript_id "RvY_14170.1"; Scaffold010 rebuild exon 249240 249412 . + . gene_id "RvY_14170"; transcript_id "RvY_14170.1"; Scaffold010 rebuild transcript 248699 249091 . - . gene_id "RvY_14171"; transcript_id "RvY_14171.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 248699 249091 . - . gene_id "RvY_14171"; transcript_id "RvY_14171.1"; Scaffold010 rebuild transcript 250796 253256 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; annotation "hypothetical protein."; Pfam "[JmjC] JmjC domain, hydroxylase|[JmjN] jmjN domain"; Scaffold010 rebuild exon 250796 251026 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; Scaffold010 rebuild exon 251302 251439 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; Scaffold010 rebuild exon 251516 251625 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; Scaffold010 rebuild exon 251926 252202 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; Scaffold010 rebuild exon 252542 252964 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; Scaffold010 rebuild exon 253026 253256 . - . gene_id "RvY_14172"; transcript_id "RvY_14172.1"; Scaffold010 rebuild transcript 253497 253685 . + . gene_id "RvY_14173"; transcript_id "RvY_14173.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 253497 253685 . + . gene_id "RvY_14173"; transcript_id "RvY_14173.1"; Scaffold010 rebuild transcript 254109 256714 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; gene_name "EF-TU"; annotation "Elongation factor Tu, mitochondrial"; Pfam "[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU_D3] Elongation factor Tu C-terminal domain|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "elongation factor Tu; Reviewed"; EC "EC3.6.5.3"; KO "K02358"; similar_genes "EFTU_MOUSE(e-value:2.3e-148;bit-score:522.0)"; Scaffold010 rebuild exon 254109 254262 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 254389 254529 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 254619 254785 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 254849 254890 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 254954 255311 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 255624 255845 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 255914 255948 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 256016 256164 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild exon 256459 256714 . + . gene_id "RvY_14174"; transcript_id "RvY_14174.1"; Scaffold010 rebuild transcript 257388 259434 . + . gene_id "RvY_14175"; transcript_id "RvY_14175.1"; annotation "hypothetical protein."; Pfam "[AKAP28] 28 kDa A-kinase anchor"; Scaffold010 rebuild exon 257388 257714 . + . gene_id "RvY_14175"; transcript_id "RvY_14175.1"; Scaffold010 rebuild exon 257879 258706 . + . gene_id "RvY_14175"; transcript_id "RvY_14175.1"; Scaffold010 rebuild exon 258998 259180 . + . gene_id "RvY_14175"; transcript_id "RvY_14175.1"; Scaffold010 rebuild exon 259225 259434 . + . gene_id "RvY_14175"; transcript_id "RvY_14175.1"; Scaffold010 rebuild transcript 259555 261182 . - . gene_id "RvY_14176"; transcript_id "RvY_14176.1"; gene_name "argK"; annotation "Methylmalonic aciduria type A protein, mitochondrial"; Pfam "[ArgK] ArgK protein|[cobW] CobW/HypB/UreG, nucleotide-binding domain"; CDD "arginine/ornithine transport system ATPase; Provisional"; EC "EC2.7.-.-"; KO "K07588"; similar_genes "MMAA_HUMAN(e-value:3.1e-63;bit-score:239.0)"; Scaffold010 rebuild exon 259555 259842 . - . gene_id "RvY_14176"; transcript_id "RvY_14176.1"; Scaffold010 rebuild exon 260096 260331 . - . gene_id "RvY_14176"; transcript_id "RvY_14176.1"; Scaffold010 rebuild exon 260397 260567 . - . gene_id "RvY_14176"; transcript_id "RvY_14176.1"; Scaffold010 rebuild exon 260654 260776 . - . gene_id "RvY_14176"; transcript_id "RvY_14176.1"; Scaffold010 rebuild exon 260936 261182 . - . gene_id "RvY_14176"; transcript_id "RvY_14176.1"; Scaffold010 rebuild transcript 262951 263106 . - . gene_id "RvY_14177"; transcript_id "RvY_14177.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 262951 263106 . - . gene_id "RvY_14177"; transcript_id "RvY_14177.1"; Scaffold010 rebuild transcript 263340 263675 . + . gene_id "RvY_14178"; transcript_id "RvY_14178.1"; gene_name "DYNLL"; annotation "putative Dynein light chain 2, cytoplasmic"; Pfam "[Dynein_light] Dynein light chain type 1"; CDD "dynein light chain; Provisional"; KO "K10418"; similar_genes "DYL2_DROME(e-value:1.3e-44;bit-score:177.0)"; Scaffold010 rebuild exon 263340 263534 . + . gene_id "RvY_14178"; transcript_id "RvY_14178.1"; Scaffold010 rebuild exon 263601 263675 . + . gene_id "RvY_14178"; transcript_id "RvY_14178.1"; Scaffold010 rebuild transcript 264702 265159 . + . gene_id "RvY_14179"; transcript_id "RvY_14179.1"; annotation "hypothetical protein."; similar_genes "KR161_MOUSE(e-value:1.2e-09;bit-score:61.0)"; Scaffold010 rebuild exon 264702 264901 . + . gene_id "RvY_14179"; transcript_id "RvY_14179.1"; Scaffold010 rebuild exon 265093 265159 . + . gene_id "RvY_14179"; transcript_id "RvY_14179.1"; Scaffold010 rebuild transcript 265906 267306 . - . gene_id "RvY_14180"; transcript_id "RvY_14180.1"; gene_name "COQ5"; annotation "Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"; Pfam "[Methyltransf_26] Methyltransferase domain|[Methyltransf_18] Methyltransferase domain|[Methyltransf_31] Methyltransferase domain|[Ubie_methyltran] ubiE/COQ5 methyltransferase family|[Methyltransf_12] Methyltransferase domain|[Methyltransf_23] Methyltransferase domain|[Methyltransf_11] Methyltransferase domain|[Methyltransf_25] Methyltransferase domain"; CDD "ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed"; EC "EC2.1.1.-"; KO "K06127"; similar_genes "COQ5_MOUSE(e-value:7.2e-52;bit-score:201.0)"; Scaffold010 rebuild exon 265906 266119 . - . gene_id "RvY_14180"; transcript_id "RvY_14180.1"; Scaffold010 rebuild exon 266202 266397 . - . gene_id "RvY_14180"; transcript_id "RvY_14180.1"; Scaffold010 rebuild exon 266479 266664 . - . gene_id "RvY_14180"; transcript_id "RvY_14180.1"; Scaffold010 rebuild exon 266860 267009 . - . gene_id "RvY_14180"; transcript_id "RvY_14180.1"; Scaffold010 rebuild exon 267081 267306 . - . gene_id "RvY_14180"; transcript_id "RvY_14180.1"; Scaffold010 rebuild transcript 268591 271064 . - . gene_id "RvY_14181"; transcript_id "RvY_14181.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 268591 268945 . - . gene_id "RvY_14181"; transcript_id "RvY_14181.1"; Scaffold010 rebuild exon 270647 270941 . - . gene_id "RvY_14181"; transcript_id "RvY_14181.1"; Scaffold010 rebuild exon 271025 271064 . - . gene_id "RvY_14181"; transcript_id "RvY_14181.1"; Scaffold010 rebuild transcript 271890 275881 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; annotation "hypothetical protein."; Pfam "[DUF4371]"; Scaffold010 rebuild exon 271890 272086 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 272146 272273 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 272334 272683 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 272873 273117 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 273386 273754 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 273902 274046 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 274097 274358 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 274484 274637 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 274717 274986 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 275060 275325 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild exon 275442 275881 . - . gene_id "RvY_14182"; transcript_id "RvY_14182.1"; Scaffold010 rebuild transcript 276040 276441 . - . gene_id "RvY_14183"; transcript_id "RvY_14183.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 276040 276441 . - . gene_id "RvY_14183"; transcript_id "RvY_14183.1"; Scaffold010 rebuild transcript 280209 281219 . - . gene_id "RvY_14184"; transcript_id "RvY_14184.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 280209 280339 . - . gene_id "RvY_14184"; transcript_id "RvY_14184.1"; Scaffold010 rebuild exon 281171 281219 . - . gene_id "RvY_14184"; transcript_id "RvY_14184.1"; Scaffold010 rebuild transcript 282131 282496 . - . gene_id "RvY_14185"; transcript_id "RvY_14185.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 282131 282496 . - . gene_id "RvY_14185"; transcript_id "RvY_14185.1"; Scaffold010 rebuild transcript 283125 288491 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; annotation "hypothetical protein."; Pfam "[NatB_MDM20] N-acetyltransferase B complex (NatB) non catalytic subunit"; Scaffold010 rebuild exon 283125 283298 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 283367 283675 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 283745 283845 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 283992 284159 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 284252 284405 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 284691 285120 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 285433 285754 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 285863 285979 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 286048 286363 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 286562 286698 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 286778 287137 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 287333 287540 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 287598 287797 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 288060 288299 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild exon 288362 288491 . - . gene_id "RvY_14186"; transcript_id "RvY_14186.1"; Scaffold010 rebuild transcript 288842 290575 . + . gene_id "RvY_14187"; transcript_id "RvY_14187.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 288842 289038 . + . gene_id "RvY_14187"; transcript_id "RvY_14187.1"; Scaffold010 rebuild exon 290383 290450 . + . gene_id "RvY_14187"; transcript_id "RvY_14187.1"; Scaffold010 rebuild exon 290532 290575 . + . gene_id "RvY_14187"; transcript_id "RvY_14187.1"; Scaffold010 rebuild transcript 293356 298831 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; gene_name "ANK"; annotation "putative KN motif and ankyrin repeat domain-containing protein 2"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "KANK2_BOVIN(e-value:2.7e-32;bit-score:136.0)"; Scaffold010 rebuild exon 293356 293528 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 293906 294266 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 294354 294840 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 295100 295596 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 295655 295972 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 296237 296931 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 296998 297414 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 297472 297589 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 297652 297801 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 297869 298081 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 298144 298236 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 298420 298683 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild exon 298772 298831 . + . gene_id "RvY_14188"; transcript_id "RvY_14188.1"; Scaffold010 rebuild transcript 299313 299519 . - . gene_id "RvY_14189"; transcript_id "RvY_14189.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 299313 299519 . - . gene_id "RvY_14189"; transcript_id "RvY_14189.1"; Scaffold010 rebuild transcript 300007 300798 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.1"; gene_name "(1)RFK"; annotation "(1)riboflavin kinase [EC:2.7.1.26](2)hypothetical protein."; Pfam "[Flavokinase] Riboflavin kinase"; EC "(1)EC2.7.1.26"; KO "(1)K00861"; similar_genes "(1)RIFK_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold010 rebuild exon 300007 300276 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.1"; Scaffold010 rebuild exon 300342 300444 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.1"; Scaffold010 rebuild exon 300641 300798 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.1"; Scaffold010 rebuild transcript 299991 300373 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.2"; gene_name "(1)RFK"; annotation "(1)riboflavin kinase [EC:2.7.1.26](2)hypothetical protein."; Pfam "[Flavokinase] Riboflavin kinase"; EC "(1)EC2.7.1.26"; KO "(1)K00861"; similar_genes "(1)RIFK_MOUSE(e-value:4.8e-17;bit-score:86.0)"; Scaffold010 rebuild exon 299991 300276 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.2"; Scaffold010 rebuild exon 300342 300373 . + . gene_id "RvY_14190"; transcript_id "RvY_14190.2"; Scaffold010 rebuild transcript 301735 301914 . - . gene_id "RvY_14191"; transcript_id "RvY_14191.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 301735 301914 . - . gene_id "RvY_14191"; transcript_id "RvY_14191.1"; Scaffold010 rebuild transcript 302201 306721 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold010 rebuild exon 302201 302279 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild exon 302357 302457 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild exon 302522 302968 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild exon 303655 304006 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild exon 304566 305219 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild exon 305564 306013 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild exon 306168 306721 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.1"; Scaffold010 rebuild transcript 302543 306027 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold010 rebuild exon 302543 302968 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.2"; Scaffold010 rebuild exon 303655 304006 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.2"; Scaffold010 rebuild exon 304566 305219 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.2"; Scaffold010 rebuild exon 305564 306027 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.2"; Scaffold010 rebuild transcript 302201 305299 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.3"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; Scaffold010 rebuild exon 302201 302279 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.3"; Scaffold010 rebuild exon 302357 302457 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.3"; Scaffold010 rebuild exon 302522 302968 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.3"; Scaffold010 rebuild exon 303655 304006 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.3"; Scaffold010 rebuild exon 304566 305299 . + . gene_id "RvY_14192"; transcript_id "RvY_14192.3"; Scaffold010 rebuild transcript 310990 311433 . - . gene_id "RvY_14193"; transcript_id "RvY_14193.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 310990 311433 . - . gene_id "RvY_14193"; transcript_id "RvY_14193.1"; Scaffold010 rebuild transcript 311757 315538 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; gene_name "ChtBD2"; annotation "hypothetical protein."; Pfam "[CBM_14] Chitin binding Peritrophin-A domain"; CDD "Chitin-binding domain type 2."; Scaffold010 rebuild exon 311757 311841 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild exon 312008 312153 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild exon 312244 312445 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild exon 312613 313165 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild exon 313423 314051 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild exon 314272 314679 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild exon 314928 315538 . + . gene_id "RvY_14194"; transcript_id "RvY_14194.1"; Scaffold010 rebuild transcript 316998 317621 . - . gene_id "RvY_14195"; transcript_id "RvY_14195.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 316998 317156 . - . gene_id "RvY_14195"; transcript_id "RvY_14195.1"; Scaffold010 rebuild exon 317218 317290 . - . gene_id "RvY_14195"; transcript_id "RvY_14195.1"; Scaffold010 rebuild exon 317536 317621 . - . gene_id "RvY_14195"; transcript_id "RvY_14195.1"; Scaffold010 rebuild transcript 318833 319334 . - . gene_id "RvY_14196"; transcript_id "RvY_14196.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 318833 319220 . - . gene_id "RvY_14196"; transcript_id "RvY_14196.1"; Scaffold010 rebuild exon 319246 319334 . - . gene_id "RvY_14196"; transcript_id "RvY_14196.1"; Scaffold010 rebuild transcript 320366 320809 . - . gene_id "RvY_14197"; transcript_id "RvY_14197.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 320366 320809 . - . gene_id "RvY_14197"; transcript_id "RvY_14197.1"; Scaffold010 rebuild transcript 320828 321412 . - . gene_id "RvY_14198"; transcript_id "RvY_14198.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 320828 321014 . - . gene_id "RvY_14198"; transcript_id "RvY_14198.1"; Scaffold010 rebuild exon 321135 321412 . - . gene_id "RvY_14198"; transcript_id "RvY_14198.1"; Scaffold010 rebuild transcript 322349 326017 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; gene_name "PAS"; annotation "hypothetical protein."; Pfam "[PAS_3] PAS fold|[PAS_9] PAS domain"; CDD "PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction."; Scaffold010 rebuild exon 322349 322994 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild exon 323160 323433 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild exon 323709 323818 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild exon 323893 324128 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild exon 324184 324447 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild exon 325561 325876 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild exon 325956 326017 . - . gene_id "RvY_14199"; transcript_id "RvY_14199.1"; Scaffold010 rebuild transcript 326897 331661 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; gene_name "AP2B1"; annotation "AP-2 complex subunit beta"; Pfam "[Arm] Armadillo/beta-catenin-like repeat|[Adaptin_N] Adaptin N terminal region|[CLASP_N] CLASP N terminal|[HEAT_2] HEAT repeats|[Cnd1] non-SMC mitotic condensation complex subunit 1|[Cnd3] Nuclear condensing complex subunits, C-term domain|[HEAT] HEAT repeat|[Alpha_adaptinC2] Adaptin C-terminal domain|[B2-adapt-app_C] Beta2-adaptin appendage, C-terminal sub-domain"; KO "K11825"; similar_genes "AP2B1_RAT(e-value:5.4e-190;bit-score:660.0)"; Scaffold010 rebuild exon 326897 327126 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 327492 327663 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 327775 327904 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 328081 328427 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 328737 328942 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 329178 329647 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 329820 329908 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 329990 330296 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 330356 330577 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 330642 330829 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 330890 331271 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 331436 331541 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild exon 331625 331661 . - . gene_id "RvY_14200"; transcript_id "RvY_14200.1"; Scaffold010 rebuild transcript 331971 332261 . + . gene_id "RvY_14201"; transcript_id "RvY_14201.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 331971 332261 . + . gene_id "RvY_14201"; transcript_id "RvY_14201.1"; Scaffold010 rebuild transcript 334981 338136 . + . gene_id "RvY_14202"; transcript_id "RvY_14202.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 334981 335363 . + . gene_id "RvY_14202"; transcript_id "RvY_14202.1"; Scaffold010 rebuild exon 335467 336043 . + . gene_id "RvY_14202"; transcript_id "RvY_14202.1"; Scaffold010 rebuild exon 336331 336941 . + . gene_id "RvY_14202"; transcript_id "RvY_14202.1"; Scaffold010 rebuild exon 337103 337470 . + . gene_id "RvY_14202"; transcript_id "RvY_14202.1"; Scaffold010 rebuild exon 337703 338136 . + . gene_id "RvY_14202"; transcript_id "RvY_14202.1"; Scaffold010 rebuild transcript 338597 339062 . - . gene_id "RvY_14203"; transcript_id "RvY_14203.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 338597 338701 . - . gene_id "RvY_14203"; transcript_id "RvY_14203.1"; Scaffold010 rebuild exon 338997 339062 . - . gene_id "RvY_14203"; transcript_id "RvY_14203.1"; Scaffold010 rebuild transcript 340235 344061 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; gene_name "(2)EXTL3"; annotation "Exostosin-like 3"; Pfam "[Exostosin] Exostosin family|[Glyco_transf_64] Glycosyl transferase family 64 domain"; EC "(1)EC2.4.1.223(2)EC2.4.1.223|EC2.4.1.224"; KO "(2)K02370"; similar_genes "EXTL3_HUMAN(e-value:8.0e-83;bit-score:304.0)"; Scaffold010 rebuild exon 340235 340972 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild exon 341096 341323 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild exon 341410 341911 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild exon 342149 342577 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild exon 342888 343042 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild exon 343117 343389 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild exon 343570 344061 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.1"; Scaffold010 rebuild transcript 340121 343990 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; gene_name "(2)EXTL3"; annotation "Exostosin-like 3"; Pfam "[Exostosin] Exostosin family|[Glyco_transf_64] Glycosyl transferase family 64 domain"; EC "(1)EC2.4.1.223(2)EC2.4.1.223|EC2.4.1.224"; KO "(2)K02370"; similar_genes "EXTL3_HUMAN(e-value:8.0e-83;bit-score:304.0)"; Scaffold010 rebuild exon 340121 340972 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 341096 341323 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 341410 341911 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 342149 342577 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 342888 343042 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 343117 343389 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 343570 343698 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild exon 343781 343990 . + . gene_id "RvY_14204"; transcript_id "RvY_14204.2"; Scaffold010 rebuild transcript 344898 346362 . + . gene_id "RvY_14205"; transcript_id "RvY_14205.1"; annotation "hypothetical protein."; Pfam "[DUF862] PPPDE putative peptidase domain"; similar_genes "PPDE1_PIG(e-value:1.3e-21;bit-score:101.0)"; Scaffold010 rebuild exon 344898 345150 . + . gene_id "RvY_14205"; transcript_id "RvY_14205.1"; Scaffold010 rebuild exon 345914 346362 . + . gene_id "RvY_14205"; transcript_id "RvY_14205.1"; Scaffold010 rebuild transcript 348005 348259 . - . gene_id "RvY_14206"; transcript_id "RvY_14206.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 348005 348259 . - . gene_id "RvY_14206"; transcript_id "RvY_14206.1"; Scaffold010 rebuild transcript 348996 353669 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; gene_name "SH2"; annotation "hypothetical protein."; Pfam "[SH2]"; CDD "Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites."; Scaffold010 rebuild exon 348996 349220 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; Scaffold010 rebuild exon 349305 350499 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; Scaffold010 rebuild exon 350739 350889 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; Scaffold010 rebuild exon 352309 352424 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; Scaffold010 rebuild exon 353134 353520 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; Scaffold010 rebuild exon 353611 353669 . - . gene_id "RvY_14207"; transcript_id "RvY_14207.1"; Scaffold010 rebuild transcript 355381 356593 . - . gene_id "RvY_14208"; transcript_id "RvY_14208.1"; gene_name "EGD2"; annotation "nascent polypeptide-associated complex subunit alpha"; Pfam "[NAC]"; KO "K03626"; similar_genes "NACA1_ARATH(e-value:2.2e-23;bit-score:107.0)"; Scaffold010 rebuild exon 355381 355403 . - . gene_id "RvY_14208"; transcript_id "RvY_14208.1"; Scaffold010 rebuild exon 355466 355832 . - . gene_id "RvY_14208"; transcript_id "RvY_14208.1"; Scaffold010 rebuild exon 355909 355992 . - . gene_id "RvY_14208"; transcript_id "RvY_14208.1"; Scaffold010 rebuild exon 356282 356593 . - . gene_id "RvY_14208"; transcript_id "RvY_14208.1"; Scaffold010 rebuild transcript 356919 358329 . + . gene_id "RvY_14209"; transcript_id "RvY_14209.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 356919 356985 . + . gene_id "RvY_14209"; transcript_id "RvY_14209.1"; Scaffold010 rebuild exon 358199 358329 . + . gene_id "RvY_14209"; transcript_id "RvY_14209.1"; Scaffold010 rebuild transcript 358703 360696 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold010 rebuild exon 358703 359097 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; Scaffold010 rebuild exon 359168 359369 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; Scaffold010 rebuild exon 359470 359619 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; Scaffold010 rebuild exon 359830 360034 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; Scaffold010 rebuild exon 360139 360538 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; Scaffold010 rebuild exon 360618 360696 . - . gene_id "RvY_14210"; transcript_id "RvY_14210.1"; Scaffold010 rebuild transcript 360920 361432 . - . gene_id "RvY_14211"; transcript_id "RvY_14211.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 360920 361432 . - . gene_id "RvY_14211"; transcript_id "RvY_14211.1"; Scaffold010 rebuild transcript 362163 362369 . + . gene_id "RvY_14212"; transcript_id "RvY_14212.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 362163 362369 . + . gene_id "RvY_14212"; transcript_id "RvY_14212.1"; Scaffold010 rebuild transcript 362555 363145 . + . gene_id "RvY_14213"; transcript_id "RvY_14213.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 362555 363145 . + . gene_id "RvY_14213"; transcript_id "RvY_14213.1"; Scaffold010 rebuild transcript 364444 367805 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; gene_name "glgB"; annotation "1,4-alpha-glucan-branching enzyme"; Pfam "[CBM_48] Carbohydrate-binding module 48 (Isoamylase N-terminal domain)|[Alpha-amylase_C] Alpha amylase, C-terminal all-beta domain|[Alpha-amylase] Alpha amylase, catalytic domain"; CDD "1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]"; EC "EC2.4.1.18"; KO "K00700"; similar_genes "GLGB_FELCA(e-value:1.1e-226;bit-score:782.0)"; Scaffold010 rebuild exon 364444 364740 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 365081 365265 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 365321 365603 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 365827 365925 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 366003 366249 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 366385 366685 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 366836 366980 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 367059 367187 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild exon 367389 367805 . - . gene_id "RvY_14214"; transcript_id "RvY_14214.1"; Scaffold010 rebuild transcript 370242 373253 . + . gene_id "RvY_14215"; transcript_id "RvY_14215.1"; gene_name "Rab"; annotation "hypothetical protein."; Pfam "[Ras] Ras family|[Miro] Miro-like protein"; CDD "Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible."; similar_genes "PARF_BOVIN(e-value:1.9e-16;bit-score:84.0)"; Scaffold010 rebuild exon 370242 370373 . + . gene_id "RvY_14215"; transcript_id "RvY_14215.1"; Scaffold010 rebuild exon 370440 370752 . + . gene_id "RvY_14215"; transcript_id "RvY_14215.1"; Scaffold010 rebuild exon 371285 372321 . + . gene_id "RvY_14215"; transcript_id "RvY_14215.1"; Scaffold010 rebuild exon 372501 373253 . + . gene_id "RvY_14215"; transcript_id "RvY_14215.1"; Scaffold010 rebuild transcript 374421 374741 . - . gene_id "RvY_14216"; transcript_id "RvY_14216.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 374421 374741 . - . gene_id "RvY_14216"; transcript_id "RvY_14216.1"; Scaffold010 rebuild transcript 375139 376033 . - . gene_id "RvY_14217"; transcript_id "RvY_14217.1"; gene_name "DEADc"; annotation "hypothetical protein."; CDD "DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region."; Scaffold010 rebuild exon 375139 375404 . - . gene_id "RvY_14217"; transcript_id "RvY_14217.1"; Scaffold010 rebuild exon 375976 376033 . - . gene_id "RvY_14217"; transcript_id "RvY_14217.1"; Scaffold010 rebuild transcript 377158 380307 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; gene_name "CPT2"; annotation "putative Carnitine O-palmitoyltransferase 2, mitochondrial"; Pfam "[Carn_acyltransf] Choline/Carnitine o-acyltransferase"; EC "EC2.3.1.21"; KO "K08766"; similar_genes "CPT2_XENTR(e-value:2.4e-31;bit-score:133.0)"; Scaffold010 rebuild exon 377158 377515 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 377571 377734 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 377909 378042 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 378115 378317 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 378385 378652 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 378781 378977 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 379045 379214 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 379297 379537 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild exon 379892 380307 . + . gene_id "RvY_14218"; transcript_id "RvY_14218.1"; Scaffold010 rebuild transcript 380579 381882 . - . gene_id "RvY_14219"; transcript_id "RvY_14219.1"; gene_name "B3GNT1"; annotation "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase [EC:2.4.1.149]"; Pfam "[Glyco_transf_49] Glycosyl-transferase for dystroglycan"; EC "EC2.4.1.149"; KO "K00741"; Scaffold010 rebuild exon 380579 381173 . - . gene_id "RvY_14219"; transcript_id "RvY_14219.1"; Scaffold010 rebuild exon 381365 381882 . - . gene_id "RvY_14219"; transcript_id "RvY_14219.1"; Scaffold010 rebuild transcript 382619 388048 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; gene_name "hnRNP-L_PTB"; annotation "putative Polypyrimidine tract-binding protein 1"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067)."; similar_genes "PTBP1_PIG(e-value:1.9e-35;bit-score:147.0)"; Scaffold010 rebuild exon 382619 382630 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 383827 384018 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 384198 384620 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 384682 384831 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 385114 385359 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 385416 385467 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 385542 385600 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 385862 386075 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 386132 386305 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 386611 386729 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 386913 386946 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 387151 387243 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 387306 387525 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 387581 387658 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 387734 387797 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild exon 387968 388048 . + . gene_id "RvY_14220"; transcript_id "RvY_14220.1"; Scaffold010 rebuild transcript 389115 392987 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; gene_name "PXN"; annotation "Transforming growth factor beta-1-induced transcript 1 protein"; Pfam "[LIM]"; KO "K05760"; similar_genes "TGFI1_MOUSE(e-value:1.8e-61;bit-score:233.0)"; Scaffold010 rebuild exon 389115 389160 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 389660 389922 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 389996 390133 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 390211 390303 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 390575 390748 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 391508 391831 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 392283 392584 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild exon 392924 392987 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.1"; Scaffold010 rebuild transcript 389656 392987 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; gene_name "PXN"; annotation "Transforming growth factor beta-1-induced transcript 1 protein"; Pfam "[LIM]"; KO "K05760"; similar_genes "TGFI1_MOUSE(e-value:1.8e-61;bit-score:233.0)"; Scaffold010 rebuild exon 389656 389922 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild exon 389996 390133 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild exon 390211 390303 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild exon 390575 390748 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild exon 391508 391831 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild exon 392283 392584 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild exon 392924 392987 . - . gene_id "RvY_14221"; transcript_id "RvY_14221.2"; Scaffold010 rebuild transcript 395277 397129 . - . gene_id "RvY_14222"; transcript_id "RvY_14222.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 395277 395648 . - . gene_id "RvY_14222"; transcript_id "RvY_14222.1"; Scaffold010 rebuild exon 395938 396278 . - . gene_id "RvY_14222"; transcript_id "RvY_14222.1"; Scaffold010 rebuild exon 396333 396617 . - . gene_id "RvY_14222"; transcript_id "RvY_14222.1"; Scaffold010 rebuild exon 396922 397129 . - . gene_id "RvY_14222"; transcript_id "RvY_14222.1"; Scaffold010 rebuild transcript 400704 400871 . + . gene_id "RvY_14223"; transcript_id "RvY_14223.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 400704 400871 . + . gene_id "RvY_14223"; transcript_id "RvY_14223.1"; Scaffold010 rebuild transcript 400961 403471 . - . gene_id "RvY_14224"; transcript_id "RvY_14224.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 400961 401207 . - . gene_id "RvY_14224"; transcript_id "RvY_14224.1"; Scaffold010 rebuild exon 401369 401499 . - . gene_id "RvY_14224"; transcript_id "RvY_14224.1"; Scaffold010 rebuild exon 402655 402990 . - . gene_id "RvY_14224"; transcript_id "RvY_14224.1"; Scaffold010 rebuild exon 403412 403471 . - . gene_id "RvY_14224"; transcript_id "RvY_14224.1"; Scaffold010 rebuild transcript 403264 403982 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 403264 403562 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.1"; Scaffold010 rebuild exon 403802 403982 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.1"; Scaffold010 rebuild transcript 403919 404395 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 403919 404395 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.2"; Scaffold010 rebuild transcript 402924 404151 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.3"; annotation "hypothetical protein."; Scaffold010 rebuild exon 402924 402978 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.3"; Scaffold010 rebuild exon 403802 404151 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.3"; Scaffold010 rebuild transcript 403264 403584 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.4"; annotation "hypothetical protein."; Scaffold010 rebuild exon 403264 403584 . + . gene_id "RvY_14225"; transcript_id "RvY_14225.4"; Scaffold010 rebuild transcript 404883 405701 . - . gene_id "RvY_14226"; transcript_id "RvY_14226.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 404883 405134 . - . gene_id "RvY_14226"; transcript_id "RvY_14226.1"; Scaffold010 rebuild exon 405558 405701 . - . gene_id "RvY_14226"; transcript_id "RvY_14226.1"; Scaffold010 rebuild transcript 411529 412964 . + . gene_id "RvY_14227"; transcript_id "RvY_14227.1"; gene_name "BUB3"; annotation "cell cycle arrest protein BUB3"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K02180"; similar_genes "BUB3_HUMAN(e-value:4.0e-12;bit-score:69.0)"; Scaffold010 rebuild exon 411529 411750 . + . gene_id "RvY_14227"; transcript_id "RvY_14227.1"; Scaffold010 rebuild exon 411821 412039 . + . gene_id "RvY_14227"; transcript_id "RvY_14227.1"; Scaffold010 rebuild exon 412330 412519 . + . gene_id "RvY_14227"; transcript_id "RvY_14227.1"; Scaffold010 rebuild exon 412585 412964 . + . gene_id "RvY_14227"; transcript_id "RvY_14227.1"; Scaffold010 rebuild transcript 413640 416123 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; gene_name "(1)YBX1"; annotation "(1)putative DNA-binding protein A(2)hypothetical protein."; Pfam "[CSD] 'Cold-shock' DNA-binding domain"; KO "(1)K09276"; similar_genes "(1)DBPA_HUMAN(e-value:7.5e-39;bit-score:158.0)"; Scaffold010 rebuild exon 413640 413760 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild exon 414307 414370 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild exon 414432 414555 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild exon 414793 414960 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild exon 415196 415408 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild exon 415670 415975 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild exon 416040 416123 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.1"; Scaffold010 rebuild transcript 415227 416220 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.2"; gene_name "(1)YBX1"; annotation "(1)putative DNA-binding protein A(2)hypothetical protein."; Pfam "[CSD] 'Cold-shock' DNA-binding domain"; KO "(1)K09276"; similar_genes "(1)DBPA_HUMAN(e-value:7.5e-39;bit-score:158.0)"; Scaffold010 rebuild exon 415227 415408 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.2"; Scaffold010 rebuild exon 415670 415975 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.2"; Scaffold010 rebuild exon 416040 416220 . + . gene_id "RvY_14228"; transcript_id "RvY_14228.2"; Scaffold010 rebuild transcript 416548 416904 . + . gene_id "RvY_14229"; transcript_id "RvY_14229.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 416548 416904 . + . gene_id "RvY_14229"; transcript_id "RvY_14229.1"; Scaffold010 rebuild transcript 417003 425863 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[HELP] HELP motif"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "EMAL1_HUMAN(e-value:5.8e-24;bit-score:109.0)"; Scaffold010 rebuild exon 417003 417063 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 418159 418248 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 418424 418528 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 419557 419971 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 420255 420433 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 420535 420664 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 420735 420884 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 420996 421071 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 421238 421510 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 421580 421720 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 421998 422097 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 422184 422467 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 423277 423408 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 423514 423679 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 424962 425147 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 425210 425454 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild exon 425711 425863 . + . gene_id "RvY_14230"; transcript_id "RvY_14230.1"; Scaffold010 rebuild transcript 426836 427348 . - . gene_id "RvY_14231"; transcript_id "RvY_14231.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 426836 427348 . - . gene_id "RvY_14231"; transcript_id "RvY_14231.1"; Scaffold010 rebuild transcript 426550 426999 . - . gene_id "RvY_14231"; transcript_id "RvY_14231.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 426550 426999 . - . gene_id "RvY_14231"; transcript_id "RvY_14231.2"; Scaffold010 rebuild transcript 428830 429150 . - . gene_id "RvY_14232"; transcript_id "RvY_14232.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 428830 429150 . - . gene_id "RvY_14232"; transcript_id "RvY_14232.1"; Scaffold010 rebuild transcript 429151 437280 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; gene_name "C2_1"; annotation "hypothetical protein."; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)|[C2]"; CDD "Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "PCLO_HUMAN(e-value:4.0e-10;bit-score:63.0)"; Scaffold010 rebuild exon 429151 429227 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 429308 429492 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 429556 429722 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 429796 429956 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 430044 430126 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 430188 430296 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 430364 430553 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 430628 431658 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 431811 432285 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 432681 433045 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 433334 433999 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 434070 435027 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 435099 435404 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 435489 435557 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 435634 435782 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 435874 436057 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 436282 436745 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild exon 437166 437280 . - . gene_id "RvY_14233"; transcript_id "RvY_14233.1"; Scaffold010 rebuild transcript 438536 440962 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; gene_name "PAFAH"; annotation "Lissencephaly-1 homolog"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A|[Nucleoporin_N] Nup133 N terminal like|[Nup160] Nucleoporin Nup120/160"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; EC "EC3.1.1.47"; KO "K01062"; similar_genes "LIS1_DICDI(e-value:4.7e-66;bit-score:249.0)"; Scaffold010 rebuild exon 438536 438609 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 438737 438893 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 438956 439054 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 439119 439256 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 439327 439598 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 439928 440024 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 440111 440317 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 440557 440634 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 440719 440797 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild exon 440889 440962 . - . gene_id "RvY_14234"; transcript_id "RvY_14234.1"; Scaffold010 rebuild transcript 442151 444562 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; annotation "putative Transmembrane protein 49"; Pfam "[SNARE_assoc] SNARE associated Golgi protein"; similar_genes "TMM49_RAT(e-value:5.4e-33;bit-score:139.0)"; Scaffold010 rebuild exon 442151 442650 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 442776 442863 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 442956 443146 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 443235 443346 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 443429 443560 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 443629 443709 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 443786 443964 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 444045 444156 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild exon 444371 444562 . + . gene_id "RvY_14235"; transcript_id "RvY_14235.1"; Scaffold010 rebuild transcript 445370 445621 . - . gene_id "RvY_14236"; transcript_id "RvY_14236.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 445370 445469 . - . gene_id "RvY_14236"; transcript_id "RvY_14236.1"; Scaffold010 rebuild exon 445527 445621 . - . gene_id "RvY_14236"; transcript_id "RvY_14236.1"; Scaffold010 rebuild transcript 446025 447365 . - . gene_id "RvY_14237"; transcript_id "RvY_14237.1"; annotation "hypothetical protein."; Pfam "[TPR_10] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat"; Scaffold010 rebuild exon 446025 446135 . - . gene_id "RvY_14237"; transcript_id "RvY_14237.1"; Scaffold010 rebuild exon 446906 447020 . - . gene_id "RvY_14237"; transcript_id "RvY_14237.1"; Scaffold010 rebuild exon 447082 447365 . - . gene_id "RvY_14237"; transcript_id "RvY_14237.1"; Scaffold010 rebuild transcript 449542 451473 . - . gene_id "RvY_14238"; transcript_id "RvY_14238.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 449542 450158 . - . gene_id "RvY_14238"; transcript_id "RvY_14238.1"; Scaffold010 rebuild exon 450294 450486 . - . gene_id "RvY_14238"; transcript_id "RvY_14238.1"; Scaffold010 rebuild exon 450624 451132 . - . gene_id "RvY_14238"; transcript_id "RvY_14238.1"; Scaffold010 rebuild exon 451218 451473 . - . gene_id "RvY_14238"; transcript_id "RvY_14238.1"; Scaffold010 rebuild transcript 453651 454328 . - . gene_id "RvY_14239"; transcript_id "RvY_14239.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 453651 454328 . - . gene_id "RvY_14239"; transcript_id "RvY_14239.1"; Scaffold010 rebuild transcript 453658 453963 . + . gene_id "RvY_14240"; transcript_id "RvY_14240.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 453658 453963 . + . gene_id "RvY_14240"; transcript_id "RvY_14240.1"; Scaffold010 rebuild transcript 454641 454841 . + . gene_id "RvY_14241"; transcript_id "RvY_14241.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 454641 454841 . + . gene_id "RvY_14241"; transcript_id "RvY_14241.1"; Scaffold010 rebuild transcript 455657 462435 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; gene_name "eIF-3X"; annotation "translation initiation factor eIF-3 subunit P135"; Pfam "[TPR_12] Tetratricopeptide repeat|[CLU] Clustered mitochondria|[eIF3_p135] Translation initiation factor eIF3 subunit 135|[DUF727]"; KO "K03255"; similar_genes "K0664_ANOGA(e-value:1.9e-22;bit-score:104.0)"; Scaffold010 rebuild exon 455657 455765 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 455974 456359 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 456424 456595 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 457022 457168 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 457242 457509 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 457569 457697 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 457762 457865 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 458067 458218 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 458308 458502 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 458575 458698 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 458835 459022 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 459142 459226 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 459311 459416 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 459488 459572 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 459654 460071 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 460316 460464 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 460544 460604 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 460689 460779 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 460853 461039 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 461107 461298 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 461378 461467 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 461934 462223 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild exon 462285 462435 . + . gene_id "RvY_14242"; transcript_id "RvY_14242.1"; Scaffold010 rebuild transcript 455704 455919 . - . gene_id "RvY_14243"; transcript_id "RvY_14243.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 455704 455919 . - . gene_id "RvY_14243"; transcript_id "RvY_14243.1"; Scaffold010 rebuild transcript 464932 466961 . + . gene_id "RvY_14244"; transcript_id "RvY_14244.1"; gene_name "CSNK1G"; annotation "Casein kinase I isoform gamma-3"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail."; EC "EC2.7.11.1"; KO "K08958"; similar_genes "KC1G3_RAT(e-value:2.6e-147;bit-score:518.0)"; Scaffold010 rebuild exon 464932 465325 . + . gene_id "RvY_14244"; transcript_id "RvY_14244.1"; Scaffold010 rebuild exon 465622 466005 . + . gene_id "RvY_14244"; transcript_id "RvY_14244.1"; Scaffold010 rebuild exon 466198 466961 . + . gene_id "RvY_14244"; transcript_id "RvY_14244.1"; Scaffold010 rebuild transcript 469288 479801 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; gene_name "LHX1_5"; annotation "putative LIM/homeobox protein Lhx5"; Pfam "[Homeobox_KN] Homeobox KN domain|[LIM]|[Homeobox]"; KO "K09372"; similar_genes "LHX5_MOUSE(e-value:6.8e-27;bit-score:118.0)"; Scaffold010 rebuild exon 469288 469460 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 471557 471807 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 472858 473051 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 473111 473372 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 473923 474008 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 476726 476966 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 479135 479449 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild exon 479665 479801 . + . gene_id "RvY_14245"; transcript_id "RvY_14245.1"; Scaffold010 rebuild transcript 480278 484724 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; gene_name "CYP11A"; annotation "cytochrome P450, family 11, subfamily A (cholesterol monooxygenase (side-chain-cleaving)) [EC:1.14.15.6]"; Pfam "[p450] Cytochrome P450"; EC "EC1.14.15.6"; KO "K00498"; similar_genes "CP11A_DASAM(e-value:8.0e-13;bit-score:72.0)"; Scaffold010 rebuild exon 480278 480397 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 480477 480520 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 480718 480970 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 481051 481129 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 481201 481298 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 481383 481454 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 481509 481681 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 481758 481970 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 482164 482399 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild exon 484183 484724 . - . gene_id "RvY_14246"; transcript_id "RvY_14246.1"; Scaffold010 rebuild transcript 486278 486640 . - . gene_id "RvY_14247"; transcript_id "RvY_14247.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 486278 486640 . - . gene_id "RvY_14247"; transcript_id "RvY_14247.1"; Scaffold010 rebuild transcript 491375 492493 . + . gene_id "RvY_14248"; transcript_id "RvY_14248.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 491375 492493 . + . gene_id "RvY_14248"; transcript_id "RvY_14248.1"; Scaffold010 rebuild transcript 493039 493797 . - . gene_id "RvY_14249"; transcript_id "RvY_14249.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 493039 493292 . - . gene_id "RvY_14249"; transcript_id "RvY_14249.1"; Scaffold010 rebuild exon 493710 493797 . - . gene_id "RvY_14249"; transcript_id "RvY_14249.1"; Scaffold010 rebuild transcript 495763 496281 . + . gene_id "RvY_14250"; transcript_id "RvY_14250.1"; gene_name "intradiol_dioxygenase_like"; annotation "hypothetical protein."; CDD "Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown."; Scaffold010 rebuild exon 495763 496281 . + . gene_id "RvY_14250"; transcript_id "RvY_14250.1"; Scaffold010 rebuild transcript 497637 498480 . + . gene_id "RvY_14251"; transcript_id "RvY_14251.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 497637 498162 . + . gene_id "RvY_14251"; transcript_id "RvY_14251.1"; Scaffold010 rebuild exon 498260 498480 . + . gene_id "RvY_14251"; transcript_id "RvY_14251.1"; Scaffold010 rebuild transcript 502448 504156 . + . gene_id "RvY_14252"; transcript_id "RvY_14252.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 502448 502856 . + . gene_id "RvY_14252"; transcript_id "RvY_14252.1"; Scaffold010 rebuild exon 502965 503314 . + . gene_id "RvY_14252"; transcript_id "RvY_14252.1"; Scaffold010 rebuild exon 504112 504156 . + . gene_id "RvY_14252"; transcript_id "RvY_14252.1"; Scaffold010 rebuild transcript 508432 512186 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; annotation "hypothetical protein."; Pfam "[Otopetrin] Protein of unknown function, DUF270"; Scaffold010 rebuild exon 508432 508582 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 508647 508756 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 508821 509096 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 509162 509526 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 509629 509983 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 510255 510623 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 510702 510816 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 510896 511366 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild exon 511684 512186 . - . gene_id "RvY_14253"; transcript_id "RvY_14253.1"; Scaffold010 rebuild transcript 513917 514312 . + . gene_id "RvY_14254"; transcript_id "RvY_14254.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 513917 514312 . + . gene_id "RvY_14254"; transcript_id "RvY_14254.1"; Scaffold010 rebuild transcript 518384 520104 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; gene_name "WDR68"; annotation "DDB1- and CUL4-associated factor 7"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K11805"; similar_genes "DCAF7_HUMAN(e-value:3.7e-121;bit-score:432.0)"; Scaffold010 rebuild exon 518384 518659 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild exon 518724 518825 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild exon 518887 519000 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild exon 519204 519336 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild exon 519417 519568 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild exon 519744 520028 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild exon 520099 520104 . + . gene_id "RvY_14255"; transcript_id "RvY_14255.1"; Scaffold010 rebuild transcript 520589 521239 . - . gene_id "RvY_14256"; transcript_id "RvY_14256.1"; gene_name "RPB4"; annotation "DNA-directed RNA polymerase II subunit D"; Pfam "[RNA_pol_Rpb4] RNA polymerase Rpb4"; KO "K03012"; Scaffold010 rebuild exon 520589 520855 . - . gene_id "RvY_14256"; transcript_id "RvY_14256.1"; Scaffold010 rebuild exon 521087 521239 . - . gene_id "RvY_14256"; transcript_id "RvY_14256.1"; Scaffold010 rebuild transcript 521728 522684 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.1"; gene_name "(1)IMP1(2)sigpep_I_bact"; annotation "(1)mitochondrial inner membrane protease subunit 1 [EC:3.4.99.-](2)hypothetical protein."; Pfam "[Peptidase_S24] Peptidase S24-like"; CDD "signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes."; EC "(1)EC3.4.21.-|EC3.4.99.-"; KO "(1)K09647"; similar_genes "(1)IMP1L_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold010 rebuild exon 521728 521937 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.1"; Scaffold010 rebuild exon 522065 522153 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.1"; Scaffold010 rebuild exon 522208 522319 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.1"; Scaffold010 rebuild exon 522410 522476 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.1"; Scaffold010 rebuild exon 522551 522684 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.1"; Scaffold010 rebuild transcript 521728 522535 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.2"; gene_name "(1)IMP1(2)sigpep_I_bact"; annotation "(1)mitochondrial inner membrane protease subunit 1 [EC:3.4.99.-](2)hypothetical protein."; Pfam "[Peptidase_S24] Peptidase S24-like"; CDD "signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes."; EC "(1)EC3.4.21.-|EC3.4.99.-"; KO "(1)K09647"; similar_genes "(1)IMP1L_HUMAN(e-value:1.0e-12;bit-score:71.0)"; Scaffold010 rebuild exon 521728 521937 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.2"; Scaffold010 rebuild exon 522065 522153 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.2"; Scaffold010 rebuild exon 522208 522319 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.2"; Scaffold010 rebuild exon 522410 522535 . + . gene_id "RvY_14257"; transcript_id "RvY_14257.2"; Scaffold010 rebuild transcript 522985 526508 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; annotation "hypothetical protein."; Pfam "[Phtf-FEM1B_bdg] Male germ-cell putative homeodomain transcription factor"; similar_genes "PHTF_DROME(e-value:5.5e-18;bit-score:89.0)"; Scaffold010 rebuild exon 522985 523131 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 523193 523288 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 523380 523622 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 523695 523826 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 524037 525050 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 525349 525637 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 525713 525926 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 526095 526164 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 526245 526307 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild exon 526362 526508 . - . gene_id "RvY_14258"; transcript_id "RvY_14258.1"; Scaffold010 rebuild transcript 527170 528283 . - . gene_id "RvY_14259"; transcript_id "RvY_14259.1"; gene_name "MNAT1"; annotation "putative CDK-activating kinase assembly factor MAT1"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[MAT1] CDK-activating kinase assembly factor MAT1"; CDD "CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)."; KO "K10842"; similar_genes "MAT1_MARGL(e-value:3.1e-31;bit-score:133.0)"; Scaffold010 rebuild exon 527170 527601 . - . gene_id "RvY_14259"; transcript_id "RvY_14259.1"; Scaffold010 rebuild exon 527777 528283 . - . gene_id "RvY_14259"; transcript_id "RvY_14259.1"; Scaffold010 rebuild transcript 528721 530313 . + . gene_id "RvY_14260"; transcript_id "RvY_14260.1"; gene_name "UppS"; annotation "hypothetical protein."; Pfam "[Prenyltransf] Putative undecaprenyl diphosphate synthase"; CDD "Undecaprenyl pyrophosphate synthase [Lipid metabolism]"; Scaffold010 rebuild exon 528721 529042 . + . gene_id "RvY_14260"; transcript_id "RvY_14260.1"; Scaffold010 rebuild exon 529104 529274 . + . gene_id "RvY_14260"; transcript_id "RvY_14260.1"; Scaffold010 rebuild exon 529557 529697 . + . gene_id "RvY_14260"; transcript_id "RvY_14260.1"; Scaffold010 rebuild exon 529765 529864 . + . gene_id "RvY_14260"; transcript_id "RvY_14260.1"; Scaffold010 rebuild exon 530223 530313 . + . gene_id "RvY_14260"; transcript_id "RvY_14260.1"; Scaffold010 rebuild transcript 530924 531973 . + . gene_id "RvY_14261"; transcript_id "RvY_14261.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 530924 531424 . + . gene_id "RvY_14261"; transcript_id "RvY_14261.1"; Scaffold010 rebuild exon 531588 531672 . + . gene_id "RvY_14261"; transcript_id "RvY_14261.1"; Scaffold010 rebuild exon 531879 531973 . + . gene_id "RvY_14261"; transcript_id "RvY_14261.1"; Scaffold010 rebuild transcript 532609 532767 . - . gene_id "RvY_14262"; transcript_id "RvY_14262.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 532609 532767 . - . gene_id "RvY_14262"; transcript_id "RvY_14262.1"; Scaffold010 rebuild transcript 537779 539054 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 537779 537870 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.1"; Scaffold010 rebuild exon 537959 539054 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.1"; Scaffold010 rebuild transcript 537779 539054 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 537779 537870 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.2"; Scaffold010 rebuild exon 537959 538534 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.2"; Scaffold010 rebuild exon 538610 539054 . - . gene_id "RvY_14263"; transcript_id "RvY_14263.2"; Scaffold010 rebuild transcript 540156 541600 . + . gene_id "RvY_14264"; transcript_id "RvY_14264.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 540156 540718 . + . gene_id "RvY_14264"; transcript_id "RvY_14264.1"; Scaffold010 rebuild exon 540834 540986 . + . gene_id "RvY_14264"; transcript_id "RvY_14264.1"; Scaffold010 rebuild exon 541060 541600 . + . gene_id "RvY_14264"; transcript_id "RvY_14264.1"; Scaffold010 rebuild transcript 541774 542875 . - . gene_id "RvY_14265"; transcript_id "RvY_14265.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 541774 542448 . - . gene_id "RvY_14265"; transcript_id "RvY_14265.1"; Scaffold010 rebuild exon 542516 542875 . - . gene_id "RvY_14265"; transcript_id "RvY_14265.1"; Scaffold010 rebuild transcript 543222 545637 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; annotation "hypothetical protein."; Pfam "[Arrestin_N] Arrestin (or S-antigen), N-terminal domain|[Arrestin_C] Arrestin (or S-antigen), C-terminal domain"; Scaffold010 rebuild exon 543222 543478 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; Scaffold010 rebuild exon 543589 543703 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; Scaffold010 rebuild exon 543767 544012 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; Scaffold010 rebuild exon 544666 544845 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; Scaffold010 rebuild exon 544974 545209 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; Scaffold010 rebuild exon 545403 545637 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.1"; Scaffold010 rebuild transcript 543222 545637 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; annotation "hypothetical protein."; Pfam "[Arrestin_N] Arrestin (or S-antigen), N-terminal domain|[Arrestin_C] Arrestin (or S-antigen), C-terminal domain"; Scaffold010 rebuild exon 543222 543478 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; Scaffold010 rebuild exon 543589 543703 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; Scaffold010 rebuild exon 543770 544012 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; Scaffold010 rebuild exon 544666 544845 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; Scaffold010 rebuild exon 544974 545209 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; Scaffold010 rebuild exon 545403 545637 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.2"; Scaffold010 rebuild transcript 543993 545637 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.3"; annotation "hypothetical protein."; Pfam "[Arrestin_N] Arrestin (or S-antigen), N-terminal domain|[Arrestin_C] Arrestin (or S-antigen), C-terminal domain"; Scaffold010 rebuild exon 543993 544012 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.3"; Scaffold010 rebuild exon 544665 544845 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.3"; Scaffold010 rebuild exon 544974 545209 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.3"; Scaffold010 rebuild exon 545403 545637 . - . gene_id "RvY_14266"; transcript_id "RvY_14266.3"; Scaffold010 rebuild transcript 548062 549411 . + . gene_id "RvY_14267"; transcript_id "RvY_14267.1"; gene_name "GT1_Gtf_like"; annotation "hypothetical protein."; Pfam "[UDPGT] UDP-glucoronosyl and UDP-glucosyl transferase"; CDD "This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics."; Scaffold010 rebuild exon 548062 549065 . + . gene_id "RvY_14267"; transcript_id "RvY_14267.1"; Scaffold010 rebuild exon 549135 549411 . + . gene_id "RvY_14267"; transcript_id "RvY_14267.1"; Scaffold010 rebuild transcript 552346 553043 . - . gene_id "RvY_14268"; transcript_id "RvY_14268.1"; gene_name "K01446"; annotation "N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]"; Pfam "[Amidase_2] N-acetylmuramoyl-L-alanine amidase"; CDD "Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine."; EC "EC3.5.1.28"; KO "K01446"; similar_genes "PGRP2_MOUSE(e-value:4.2e-18;bit-score:89.0)"; Scaffold010 rebuild exon 552346 552643 . - . gene_id "RvY_14268"; transcript_id "RvY_14268.1"; Scaffold010 rebuild exon 552726 552846 . - . gene_id "RvY_14268"; transcript_id "RvY_14268.1"; Scaffold010 rebuild exon 552932 553043 . - . gene_id "RvY_14268"; transcript_id "RvY_14268.1"; Scaffold010 rebuild transcript 553939 555985 . + . gene_id "RvY_14269"; transcript_id "RvY_14269.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 553939 554047 . + . gene_id "RvY_14269"; transcript_id "RvY_14269.1"; Scaffold010 rebuild exon 554059 554235 . + . gene_id "RvY_14269"; transcript_id "RvY_14269.1"; Scaffold010 rebuild exon 554372 554886 . + . gene_id "RvY_14269"; transcript_id "RvY_14269.1"; Scaffold010 rebuild exon 554952 555155 . + . gene_id "RvY_14269"; transcript_id "RvY_14269.1"; Scaffold010 rebuild exon 555272 555985 . + . gene_id "RvY_14269"; transcript_id "RvY_14269.1"; Scaffold010 rebuild transcript 556476 558880 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.12"; similar_genes "(1)ARSB_RAT(e-value:2.4e-12;bit-score:70.0)(2)ARSB_FELCA(e-value:2.3e-10;bit-score:63.0)"; Scaffold010 rebuild exon 556476 556773 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 556850 557170 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 557233 557419 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 557481 557607 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 557729 557854 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 557977 558047 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 558107 558256 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 558358 558395 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 558472 558593 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild exon 558665 558880 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.1"; Scaffold010 rebuild transcript 557476 558880 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; gene_name "AslA"; annotation "hypothetical protein."; Pfam "[Sulfatase]|(1)[Phosphodiest] Type I phosphodiesterase / nucleotide pyrophosphatase"; CDD "Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]"; EC "EC3.1.6.12"; similar_genes "(1)ARSB_RAT(e-value:2.4e-12;bit-score:70.0)(2)ARSB_FELCA(e-value:2.3e-10;bit-score:63.0)"; Scaffold010 rebuild exon 557476 557607 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild exon 557729 557854 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild exon 557977 558047 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild exon 558107 558256 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild exon 558358 558395 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild exon 558472 558593 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild exon 558665 558880 . - . gene_id "RvY_14270"; transcript_id "RvY_14270.2"; Scaffold010 rebuild transcript 559989 561283 . - . gene_id "RvY_14271"; transcript_id "RvY_14271.1"; gene_name "DltE"; annotation "hypothetical protein."; Pfam "[adh_short_C2] Enoyl-(Acyl carrier protein) reductase|[adh_short] short chain dehydrogenase|[KR]"; CDD "Short-chain dehydrogenases of various substrate specificities [General function prediction only]"; EC "EC1.1.-.-"; similar_genes "DHB13_HUMAN(e-value:8.1e-15;bit-score:78.0)"; Scaffold010 rebuild exon 559989 560139 . - . gene_id "RvY_14271"; transcript_id "RvY_14271.1"; Scaffold010 rebuild exon 560195 560320 . - . gene_id "RvY_14271"; transcript_id "RvY_14271.1"; Scaffold010 rebuild exon 560381 560625 . - . gene_id "RvY_14271"; transcript_id "RvY_14271.1"; Scaffold010 rebuild exon 560819 561283 . - . gene_id "RvY_14271"; transcript_id "RvY_14271.1"; Scaffold010 rebuild transcript 561237 568108 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; annotation "hypothetical protein."; similar_genes "RBGPR_HUMAN(e-value:6.0e-11;bit-score:65.0)"; Scaffold010 rebuild exon 561237 561312 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 561683 561841 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 561900 562459 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 562663 563039 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 563314 563640 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 563706 564055 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 564154 564307 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 564477 565042 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 565329 565594 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 565900 566359 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 566640 566821 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 566883 567197 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 567547 567891 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild exon 567956 568108 . + . gene_id "RvY_14272"; transcript_id "RvY_14272.1"; Scaffold010 rebuild transcript 570410 570865 . - . gene_id "RvY_14273"; transcript_id "RvY_14273.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 570410 570865 . - . gene_id "RvY_14273"; transcript_id "RvY_14273.1"; Scaffold010 rebuild transcript 571230 573307 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; gene_name "PSMC4"; annotation "26S protease regulatory subunit 6B"; Pfam "[AAA_16] AAA ATPase domain|[AAA_22] AAA domain|[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)|[AAA_2] AAA domain (Cdc48 subfamily)"; CDD "ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]"; KO "K03063"; similar_genes "PRS6B_MANSE(e-value:3.8e-195;bit-score:677.0)"; Scaffold010 rebuild exon 571230 571274 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 571341 571433 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 571605 571791 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 571849 571995 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 572062 572265 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 572393 572637 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 572900 573124 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild exon 573194 573307 . + . gene_id "RvY_14274"; transcript_id "RvY_14274.1"; Scaffold010 rebuild transcript 573501 575599 . - . gene_id "RvY_14275"; transcript_id "RvY_14275.1"; gene_name "SUMF1"; annotation "Sulfatase-modifying factor 1"; Pfam "[FGE-sulfatase] Formylglycine-generating sulfatase enzyme"; EC "EC1.8.99.-"; KO "K13444"; similar_genes "SUMF1_BOVIN(e-value:5.8e-58;bit-score:222.0)"; Scaffold010 rebuild exon 573501 573740 . - . gene_id "RvY_14275"; transcript_id "RvY_14275.1"; Scaffold010 rebuild exon 574459 574853 . - . gene_id "RvY_14275"; transcript_id "RvY_14275.1"; Scaffold010 rebuild exon 575077 575599 . - . gene_id "RvY_14275"; transcript_id "RvY_14275.1"; Scaffold010 rebuild transcript 576499 578696 . + . gene_id "RvY_14276"; transcript_id "RvY_14276.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 576499 576547 . + . gene_id "RvY_14276"; transcript_id "RvY_14276.1"; Scaffold010 rebuild exon 576868 577458 . + . gene_id "RvY_14276"; transcript_id "RvY_14276.1"; Scaffold010 rebuild exon 577680 578097 . + . gene_id "RvY_14276"; transcript_id "RvY_14276.1"; Scaffold010 rebuild exon 578168 578696 . + . gene_id "RvY_14276"; transcript_id "RvY_14276.1"; Scaffold010 rebuild transcript 580008 580450 . - . gene_id "RvY_14277"; transcript_id "RvY_14277.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 580008 580188 . - . gene_id "RvY_14277"; transcript_id "RvY_14277.1"; Scaffold010 rebuild exon 580302 580450 . - . gene_id "RvY_14277"; transcript_id "RvY_14277.1"; Scaffold010 rebuild transcript 581524 582855 . + . gene_id "RvY_14278"; transcript_id "RvY_14278.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 581524 581700 . + . gene_id "RvY_14278"; transcript_id "RvY_14278.1"; Scaffold010 rebuild exon 582081 582283 . + . gene_id "RvY_14278"; transcript_id "RvY_14278.1"; Scaffold010 rebuild exon 582512 582649 . + . gene_id "RvY_14278"; transcript_id "RvY_14278.1"; Scaffold010 rebuild exon 582765 582855 . + . gene_id "RvY_14278"; transcript_id "RvY_14278.1"; Scaffold010 rebuild transcript 583313 585338 . - . gene_id "RvY_14279"; transcript_id "RvY_14279.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 583313 583479 . - . gene_id "RvY_14279"; transcript_id "RvY_14279.1"; Scaffold010 rebuild exon 584086 584230 . - . gene_id "RvY_14279"; transcript_id "RvY_14279.1"; Scaffold010 rebuild exon 584398 584600 . - . gene_id "RvY_14279"; transcript_id "RvY_14279.1"; Scaffold010 rebuild exon 585119 585338 . - . gene_id "RvY_14279"; transcript_id "RvY_14279.1"; Scaffold010 rebuild transcript 587202 589705 . + . gene_id "RvY_14280"; transcript_id "RvY_14280.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; similar_genes "OCT1_CAEEL(e-value:1.4e-10;bit-score:64.0)"; Scaffold010 rebuild exon 587202 587318 . + . gene_id "RvY_14280"; transcript_id "RvY_14280.1"; Scaffold010 rebuild exon 587936 589705 . + . gene_id "RvY_14280"; transcript_id "RvY_14280.1"; Scaffold010 rebuild transcript 590493 592847 . + . gene_id "RvY_14281"; transcript_id "RvY_14281.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; similar_genes "S22A2_PONAB(e-value:2.7e-13;bit-score:73.0)"; Scaffold010 rebuild exon 590493 590516 . + . gene_id "RvY_14281"; transcript_id "RvY_14281.1"; Scaffold010 rebuild exon 590590 590682 . + . gene_id "RvY_14281"; transcript_id "RvY_14281.1"; Scaffold010 rebuild exon 590976 591457 . + . gene_id "RvY_14281"; transcript_id "RvY_14281.1"; Scaffold010 rebuild exon 591515 591904 . + . gene_id "RvY_14281"; transcript_id "RvY_14281.1"; Scaffold010 rebuild exon 592097 592847 . + . gene_id "RvY_14281"; transcript_id "RvY_14281.1"; Scaffold010 rebuild transcript 593109 593591 . - . gene_id "RvY_14282"; transcript_id "RvY_14282.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 593109 593591 . - . gene_id "RvY_14282"; transcript_id "RvY_14282.1"; Scaffold010 rebuild transcript 596639 597987 . + . gene_id "RvY_14283"; transcript_id "RvY_14283.1"; gene_name "TRAF4"; annotation "TNF receptor-associated factor 4"; Pfam "[MATH]|[zf-TRAF] TRAF-type zinc finger"; CDD "Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TRIF. DTRAF1 plays a pivotal role in the development of eye imaginal discs and photosensory neuron arrays in Drosophila. TRAF4 contains a RING finger domain, seven zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors."; KO "K09848"; similar_genes "TRAF4_HUMAN(e-value:1.4e-18;bit-score:91.0)"; Scaffold010 rebuild exon 596639 596725 . + . gene_id "RvY_14283"; transcript_id "RvY_14283.1"; Scaffold010 rebuild exon 596986 597306 . + . gene_id "RvY_14283"; transcript_id "RvY_14283.1"; Scaffold010 rebuild exon 597373 597987 . + . gene_id "RvY_14283"; transcript_id "RvY_14283.1"; Scaffold010 rebuild transcript 599099 599429 . - . gene_id "RvY_14284"; transcript_id "RvY_14284.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 599099 599245 . - . gene_id "RvY_14284"; transcript_id "RvY_14284.1"; Scaffold010 rebuild exon 599367 599429 . - . gene_id "RvY_14284"; transcript_id "RvY_14284.1"; Scaffold010 rebuild transcript 599714 599884 . - . gene_id "RvY_14285"; transcript_id "RvY_14285.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 599714 599884 . - . gene_id "RvY_14285"; transcript_id "RvY_14285.1"; Scaffold010 rebuild transcript 600561 600884 . - . gene_id "RvY_14286"; transcript_id "RvY_14286.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 600561 600884 . - . gene_id "RvY_14286"; transcript_id "RvY_14286.1"; Scaffold010 rebuild transcript 600893 605464 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; annotation "hypothetical protein."; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; similar_genes "PLAG1_CHICK(e-value:9.2e-14;bit-score:75.0)"; Scaffold010 rebuild exon 600893 601687 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 601799 602083 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 602401 602960 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 603349 603430 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 603573 603725 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 604020 604132 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 604218 604373 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild exon 605446 605464 . - . gene_id "RvY_14287"; transcript_id "RvY_14287.1"; Scaffold010 rebuild transcript 606562 611033 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; gene_name "BRE1"; annotation "E3 ubiquitin-protein ligase BRE1 [EC:6.3.2.19]"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)"; CDD "Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)"; EC "EC6.3.2.-|EC6.3.2.19"; KO "K10696"; similar_genes "BRE1_DROME(e-value:1.1e-18;bit-score:91.0)"; Scaffold010 rebuild exon 606562 606780 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 606842 607009 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 607072 607333 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 607442 607545 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 607632 607871 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 607972 608097 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 608166 608339 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 608426 608561 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 608665 608783 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 608872 609122 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 609291 609804 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 610086 610436 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild exon 610752 611033 . + . gene_id "RvY_14288"; transcript_id "RvY_14288.1"; Scaffold010 rebuild transcript 611887 613283 . + . gene_id "RvY_14289"; transcript_id "RvY_14289.1"; annotation "Putative tricarboxylate transport protein, mitochondrial"; Pfam "[Mito_carr] Mitochondrial carrier protein"; KO "K15100"; similar_genes "TXTP_CAEEL(e-value:1.0e-76;bit-score:284.0)"; Scaffold010 rebuild exon 611887 612129 . + . gene_id "RvY_14289"; transcript_id "RvY_14289.1"; Scaffold010 rebuild exon 612194 612270 . + . gene_id "RvY_14289"; transcript_id "RvY_14289.1"; Scaffold010 rebuild exon 612350 612687 . + . gene_id "RvY_14289"; transcript_id "RvY_14289.1"; Scaffold010 rebuild exon 612800 613094 . + . gene_id "RvY_14289"; transcript_id "RvY_14289.1"; Scaffold010 rebuild exon 613172 613283 . + . gene_id "RvY_14289"; transcript_id "RvY_14289.1"; Scaffold010 rebuild transcript 613729 614830 . - . gene_id "RvY_14290"; transcript_id "RvY_14290.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 613729 614417 . - . gene_id "RvY_14290"; transcript_id "RvY_14290.1"; Scaffold010 rebuild exon 614671 614830 . - . gene_id "RvY_14290"; transcript_id "RvY_14290.1"; Scaffold010 rebuild transcript 615194 617516 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; annotation "hypothetical protein."; Pfam "[DUF1682]|[Caldesmon]"; similar_genes "CCD47_XENLA(e-value:2.5e-22;bit-score:103.0)"; Scaffold010 rebuild exon 615194 615538 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 615594 615707 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 615851 616025 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 616116 616336 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 616492 616701 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 616757 616901 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 616979 617088 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 617171 617338 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild exon 617445 617516 . + . gene_id "RvY_14291"; transcript_id "RvY_14291.1"; Scaffold010 rebuild transcript 619166 620647 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.1"; gene_name "(2)TM4SF2_6_like_LEL"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; CDD "(2)Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the ""tetraspanin web"". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation."; Scaffold010 rebuild exon 619166 619587 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.1"; Scaffold010 rebuild exon 619753 619837 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.1"; Scaffold010 rebuild exon 619927 619998 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.1"; Scaffold010 rebuild exon 620144 620647 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.1"; Scaffold010 rebuild transcript 619166 620459 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.2"; gene_name "(2)TM4SF2_6_like_LEL"; annotation "hypothetical protein."; Pfam "[Tetraspannin] Tetraspanin family"; CDD "(2)Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the ""tetraspanin web"". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation."; Scaffold010 rebuild exon 619166 619587 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.2"; Scaffold010 rebuild exon 619753 619837 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.2"; Scaffold010 rebuild exon 619927 619998 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.2"; Scaffold010 rebuild exon 620144 620267 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.2"; Scaffold010 rebuild exon 620380 620459 . + . gene_id "RvY_14292"; transcript_id "RvY_14292.2"; Scaffold010 rebuild transcript 621167 628731 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PXDN_HUMAN(e-value:3.7e-17;bit-score:86.0)"; Scaffold010 rebuild exon 621167 621482 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 621802 621919 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 622179 622594 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 622716 623009 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 624098 624257 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 624324 624529 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 624697 624854 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 624916 625208 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 625281 625450 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 625528 625636 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 625704 625768 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 625831 626074 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 626145 626487 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 626553 626895 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 626990 627171 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 627284 628018 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 628086 628191 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild exon 628292 628731 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.1"; Scaffold010 rebuild transcript 621091 628731 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; annotation "hypothetical protein."; Pfam "[An_peroxidase] Animal haem peroxidase"; EC "EC1.11.1.7"; similar_genes "PXDN_HUMAN(e-value:3.7e-17;bit-score:86.0)"; Scaffold010 rebuild exon 621091 621101 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 621187 621482 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 621802 621919 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 622179 622594 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 622716 623009 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 624098 624257 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 624324 624529 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 624697 624854 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 624916 625208 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 625281 625450 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 625528 625636 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 625704 625768 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 625831 626074 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 626145 626487 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 626553 626895 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 626990 627171 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 627284 628018 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 628086 628191 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild exon 628292 628731 . + . gene_id "RvY_14293"; transcript_id "RvY_14293.2"; Scaffold010 rebuild transcript 629735 633032 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; annotation "putative Cullin-3"; Pfam "[Cullin] Cullin family|[Cullin_Nedd8] Cullin protein neddylation domain"; similar_genes "CUL3_MOUSE(e-value:5.3e-48;bit-score:189.0)"; Scaffold010 rebuild exon 629735 629764 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 629851 630048 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 630140 630253 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 630318 630596 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 630666 630894 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 631083 631408 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 631464 631742 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 631921 632045 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 632126 632475 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 632536 632604 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 632680 632947 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild exon 633008 633032 . + . gene_id "RvY_14294"; transcript_id "RvY_14294.1"; Scaffold010 rebuild transcript 633362 639517 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "RIMB2_MOUSE(e-value:1.5e-07;bit-score:54.0)"; Scaffold010 rebuild exon 633362 633694 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 633873 634157 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 634213 634832 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 635065 635811 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 635876 636370 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 636714 637555 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 637759 637813 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 637888 638170 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 638538 638588 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 638727 638831 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 639145 639267 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild exon 639485 639517 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.1"; Scaffold010 rebuild transcript 633362 638101 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; gene_name "SH3"; annotation "hypothetical protein."; Pfam "[fn3] Fibronectin type III domain|[SH3_2] Variant SH3 domain|[SH3_1] SH3 domain"; CDD "Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations."; similar_genes "RIMB2_MOUSE(e-value:1.5e-07;bit-score:54.0)"; Scaffold010 rebuild exon 633362 633694 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 633873 634157 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 634213 634832 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 635065 635811 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 635876 636370 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 636714 637555 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 637759 637810 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild exon 637888 638101 . - . gene_id "RvY_14295"; transcript_id "RvY_14295.2"; Scaffold010 rebuild transcript 644917 645300 . + . gene_id "RvY_14296"; transcript_id "RvY_14296.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 644917 645300 . + . gene_id "RvY_14296"; transcript_id "RvY_14296.1"; Scaffold010 rebuild transcript 647375 648512 . - . gene_id "RvY_14297"; transcript_id "RvY_14297.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 647375 647503 . - . gene_id "RvY_14297"; transcript_id "RvY_14297.1"; Scaffold010 rebuild exon 647796 648512 . - . gene_id "RvY_14297"; transcript_id "RvY_14297.1"; Scaffold010 rebuild transcript 647476 648512 . - . gene_id "RvY_14297"; transcript_id "RvY_14297.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 647476 647503 . - . gene_id "RvY_14297"; transcript_id "RvY_14297.2"; Scaffold010 rebuild exon 647791 648512 . - . gene_id "RvY_14297"; transcript_id "RvY_14297.2"; Scaffold010 rebuild transcript 649495 651528 . - . gene_id "RvY_14298"; transcript_id "RvY_14298.1"; gene_name "K10758"; annotation "thiol oxidase [EC:1.8.3.2]"; Pfam "[Thioredoxin]|[Evr1_Alr] Erv1 / Alr family"; CDD "PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox Scaffold010 rebuild exon 649495 650474 . - . gene_id "RvY_14298"; transcript_id "RvY_14298.1"; Scaffold010 rebuild exon 650772 651528 . - . gene_id "RvY_14298"; transcript_id "RvY_14298.1"; Scaffold010 rebuild transcript 652143 653251 . + . gene_id "RvY_14299"; transcript_id "RvY_14299.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 652143 652408 . + . gene_id "RvY_14299"; transcript_id "RvY_14299.1"; Scaffold010 rebuild exon 652472 652510 . + . gene_id "RvY_14299"; transcript_id "RvY_14299.1"; Scaffold010 rebuild exon 652574 652729 . + . gene_id "RvY_14299"; transcript_id "RvY_14299.1"; Scaffold010 rebuild exon 652792 652950 . + . gene_id "RvY_14299"; transcript_id "RvY_14299.1"; Scaffold010 rebuild exon 653035 653251 . + . gene_id "RvY_14299"; transcript_id "RvY_14299.1"; Scaffold010 rebuild transcript 653685 660214 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; annotation "putative Oxysterol-binding protein 1"; Pfam "[PH]|[Oxysterol_BP] Oxysterol-binding protein"; similar_genes "OSBP1_RABIT(e-value:8.1e-49;bit-score:191.0)"; Scaffold010 rebuild exon 653685 653848 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 653960 654177 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 654393 654556 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 654686 654809 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 654915 654967 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 655395 655535 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 655643 655888 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 656438 656596 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 656736 656913 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 657144 657258 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 657785 658007 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 658909 659150 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 659424 659650 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild exon 659985 660214 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.1"; Scaffold010 rebuild transcript 653685 660214 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; annotation "putative Oxysterol-binding protein 1"; Pfam "[PH]|[Oxysterol_BP] Oxysterol-binding protein"; similar_genes "OSBP1_RABIT(e-value:8.1e-49;bit-score:191.0)"; Scaffold010 rebuild exon 653685 653848 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 653960 654177 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 654393 654556 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 654686 654809 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 654915 654967 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 655395 655535 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 655643 655888 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 656438 656596 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 656736 656913 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 657144 657258 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 657785 658007 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 658909 659150 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 659442 659650 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild exon 659985 660214 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.2"; Scaffold010 rebuild transcript 653842 660214 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; annotation "putative Oxysterol-binding protein 1"; Pfam "[PH]|[Oxysterol_BP] Oxysterol-binding protein"; similar_genes "OSBP1_RABIT(e-value:8.1e-49;bit-score:191.0)"; Scaffold010 rebuild exon 653842 653849 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 653960 654177 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 654393 654556 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 654686 654809 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 654915 654967 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 655395 655535 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 655643 655888 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 656438 656596 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 656736 656913 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 657144 657258 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 657785 658007 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 658909 659150 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 659424 659650 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild exon 659985 660214 . - . gene_id "RvY_14300"; transcript_id "RvY_14300.3"; Scaffold010 rebuild transcript 660632 662122 . + . gene_id "RvY_14301"; transcript_id "RvY_14301.1"; annotation "hypothetical protein."; Pfam "[EMP24_GP25L] emp24/gp25L/p24 family/GOLD"; KO "K14825"; similar_genes "TMED5_BOVIN(e-value:2.0e-07;bit-score:54.0)"; Scaffold010 rebuild exon 660632 660761 . + . gene_id "RvY_14301"; transcript_id "RvY_14301.1"; Scaffold010 rebuild exon 660824 660858 . + . gene_id "RvY_14301"; transcript_id "RvY_14301.1"; Scaffold010 rebuild exon 661519 661945 . + . gene_id "RvY_14301"; transcript_id "RvY_14301.1"; Scaffold010 rebuild exon 662010 662122 . + . gene_id "RvY_14301"; transcript_id "RvY_14301.1"; Scaffold010 rebuild transcript 662826 664165 . + . gene_id "RvY_14302"; transcript_id "RvY_14302.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 662826 662909 . + . gene_id "RvY_14302"; transcript_id "RvY_14302.1"; Scaffold010 rebuild exon 662989 663251 . + . gene_id "RvY_14302"; transcript_id "RvY_14302.1"; Scaffold010 rebuild exon 663450 663920 . + . gene_id "RvY_14302"; transcript_id "RvY_14302.1"; Scaffold010 rebuild exon 663994 664165 . + . gene_id "RvY_14302"; transcript_id "RvY_14302.1"; Scaffold010 rebuild transcript 664539 666568 . - . gene_id "RvY_14303"; transcript_id "RvY_14303.1"; gene_name "ARIH1"; annotation "Protein ariadne-1 homolog"; Pfam "[zf-C3HC4_2] Zinc finger, C3HC4 type (RING finger)|[IBR]"; KO "K11968"; similar_genes "ARI1_BOVIN(e-value:7.9e-98;bit-score:354.0)"; Scaffold010 rebuild exon 664539 664910 . - . gene_id "RvY_14303"; transcript_id "RvY_14303.1"; Scaffold010 rebuild exon 665089 665306 . - . gene_id "RvY_14303"; transcript_id "RvY_14303.1"; Scaffold010 rebuild exon 665371 665908 . - . gene_id "RvY_14303"; transcript_id "RvY_14303.1"; Scaffold010 rebuild exon 666082 666240 . - . gene_id "RvY_14303"; transcript_id "RvY_14303.1"; Scaffold010 rebuild exon 666305 666568 . - . gene_id "RvY_14303"; transcript_id "RvY_14303.1"; Scaffold010 rebuild transcript 668435 669402 . + . gene_id "RvY_14304"; transcript_id "RvY_14304.1"; annotation "putative Protein unc-119 homolog"; Pfam "[GMP_PDE_delta] GMP-PDE, delta subunit"; similar_genes "UN119_DROME(e-value:7.1e-50;bit-score:195.0)"; Scaffold010 rebuild exon 668435 668615 . + . gene_id "RvY_14304"; transcript_id "RvY_14304.1"; Scaffold010 rebuild exon 668694 668916 . + . gene_id "RvY_14304"; transcript_id "RvY_14304.1"; Scaffold010 rebuild exon 669034 669206 . + . gene_id "RvY_14304"; transcript_id "RvY_14304.1"; Scaffold010 rebuild exon 669269 669402 . + . gene_id "RvY_14304"; transcript_id "RvY_14304.1"; Scaffold010 rebuild transcript 670126 670717 . - . gene_id "RvY_14305"; transcript_id "RvY_14305.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 670126 670463 . - . gene_id "RvY_14305"; transcript_id "RvY_14305.1"; Scaffold010 rebuild exon 670633 670717 . - . gene_id "RvY_14305"; transcript_id "RvY_14305.1"; Scaffold010 rebuild transcript 671305 671511 . + . gene_id "RvY_14306"; transcript_id "RvY_14306.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 671305 671511 . + . gene_id "RvY_14306"; transcript_id "RvY_14306.1"; Scaffold010 rebuild transcript 671819 672163 . - . gene_id "RvY_14307"; transcript_id "RvY_14307.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 671819 672163 . - . gene_id "RvY_14307"; transcript_id "RvY_14307.1"; Scaffold010 rebuild transcript 673910 674995 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; gene_name "(1)GLO1(2,3)glyox_I"; annotation "(1,3)Lactoylglutathione lyase(2)putative Lactoylglutathione lyase"; Pfam "[Glyoxalase] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|(1,3)[Glyoxalase_4] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|(1,3)[Glyoxalase_2] Glyoxalase-like domain"; CDD "lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this HMM twice."; EC "EC4.4.1.5"; KO "(1)K01759"; similar_genes "(1)LGUL_RAT(e-value:2.1e-68;bit-score:256.0)(2)LGUL_RAT(e-value:2.2e-40;bit-score:163.0)(3)LGUL_RAT(e-value:8.6e-57;bit-score:218.0)"; Scaffold010 rebuild exon 673910 673969 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; Scaffold010 rebuild exon 674036 674118 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; Scaffold010 rebuild exon 674231 674371 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; Scaffold010 rebuild exon 674491 674558 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; Scaffold010 rebuild exon 674729 674818 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; Scaffold010 rebuild exon 674913 674995 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.1"; Scaffold010 rebuild transcript 673910 674707 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.2"; gene_name "(1)GLO1(2,3)glyox_I"; annotation "(1,3)Lactoylglutathione lyase(2)putative Lactoylglutathione lyase"; Pfam "[Glyoxalase] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|(1,3)[Glyoxalase_4] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|(1,3)[Glyoxalase_2] Glyoxalase-like domain"; CDD "lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this HMM twice."; EC "EC4.4.1.5"; KO "(1)K01759"; similar_genes "(1)LGUL_RAT(e-value:2.1e-68;bit-score:256.0)(2)LGUL_RAT(e-value:2.2e-40;bit-score:163.0)(3)LGUL_RAT(e-value:8.6e-57;bit-score:218.0)"; Scaffold010 rebuild exon 673910 673969 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.2"; Scaffold010 rebuild exon 674036 674118 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.2"; Scaffold010 rebuild exon 674231 674371 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.2"; Scaffold010 rebuild exon 674491 674707 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.2"; Scaffold010 rebuild transcript 673910 674832 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.3"; gene_name "(1)GLO1(2,3)glyox_I"; annotation "(1,3)Lactoylglutathione lyase(2)putative Lactoylglutathione lyase"; Pfam "[Glyoxalase] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|(1,3)[Glyoxalase_4] Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily|(1,3)[Glyoxalase_2] Glyoxalase-like domain"; CDD "lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this HMM twice."; EC "EC4.4.1.5"; KO "(1)K01759"; similar_genes "(1)LGUL_RAT(e-value:2.1e-68;bit-score:256.0)(2)LGUL_RAT(e-value:2.2e-40;bit-score:163.0)(3)LGUL_RAT(e-value:8.6e-57;bit-score:218.0)"; Scaffold010 rebuild exon 673910 673969 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.3"; Scaffold010 rebuild exon 674036 674118 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.3"; Scaffold010 rebuild exon 674231 674371 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.3"; Scaffold010 rebuild exon 674491 674558 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.3"; Scaffold010 rebuild exon 674729 674832 . + . gene_id "RvY_14308"; transcript_id "RvY_14308.3"; Scaffold010 rebuild transcript 675076 676465 . - . gene_id "RvY_14309"; transcript_id "RvY_14309.1"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 675076 675536 . - . gene_id "RvY_14309"; transcript_id "RvY_14309.1"; Scaffold010 rebuild exon 676216 676465 . - . gene_id "RvY_14309"; transcript_id "RvY_14309.1"; Scaffold010 rebuild transcript 676398 676823 . - . gene_id "RvY_14309"; transcript_id "RvY_14309.2"; annotation "hypothetical protein."; Pfam "[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 676398 676823 . - . gene_id "RvY_14309"; transcript_id "RvY_14309.2"; Scaffold010 rebuild transcript 678322 678720 . + . gene_id "RvY_14310"; transcript_id "RvY_14310.1"; gene_name "SAA"; annotation "hypothetical protein."; Pfam "[SAA] Serum amyloid A protein"; CDD "Serum amyloid A proteins. Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins."; Scaffold010 rebuild exon 678322 678720 . + . gene_id "RvY_14310"; transcript_id "RvY_14310.1"; Scaffold010 rebuild transcript 678916 680334 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.1"; annotation "hypothetical protein."; Pfam "[Clp1] Pre-mRNA cleavage complex II protein Clp1"; Scaffold010 rebuild exon 678916 679135 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.1"; Scaffold010 rebuild exon 679386 679533 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.1"; Scaffold010 rebuild exon 679607 679867 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.1"; Scaffold010 rebuild exon 679945 680200 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.1"; Scaffold010 rebuild exon 680266 680334 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.1"; Scaffold010 rebuild transcript 679028 680334 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.2"; annotation "hypothetical protein."; Pfam "[Clp1] Pre-mRNA cleavage complex II protein Clp1"; Scaffold010 rebuild exon 679028 679135 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.2"; Scaffold010 rebuild exon 679490 679533 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.2"; Scaffold010 rebuild exon 679607 679867 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.2"; Scaffold010 rebuild exon 679945 680200 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.2"; Scaffold010 rebuild exon 680266 680334 . - . gene_id "RvY_14311"; transcript_id "RvY_14311.2"; Scaffold010 rebuild transcript 681118 682919 . + . gene_id "RvY_14312"; transcript_id "RvY_14312.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 681118 681354 . + . gene_id "RvY_14312"; transcript_id "RvY_14312.1"; Scaffold010 rebuild exon 682761 682919 . + . gene_id "RvY_14312"; transcript_id "RvY_14312.1"; Scaffold010 rebuild transcript 683237 683455 . - . gene_id "RvY_14313"; transcript_id "RvY_14313.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 683237 683455 . - . gene_id "RvY_14313"; transcript_id "RvY_14313.1"; Scaffold010 rebuild transcript 684245 685355 . + . gene_id "RvY_14314"; transcript_id "RvY_14314.1"; annotation "hypothetical protein."; Pfam "[RVT_1] Reverse transcriptase (RNA-dependent DNA polymerase)"; Scaffold010 rebuild exon 684245 684453 . + . gene_id "RvY_14314"; transcript_id "RvY_14314.1"; Scaffold010 rebuild exon 684551 685355 . + . gene_id "RvY_14314"; transcript_id "RvY_14314.1"; Scaffold010 rebuild transcript 685557 686502 . + . gene_id "RvY_14315"; transcript_id "RvY_14315.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 685557 685713 . + . gene_id "RvY_14315"; transcript_id "RvY_14315.1"; Scaffold010 rebuild exon 685931 686502 . + . gene_id "RvY_14315"; transcript_id "RvY_14315.1"; Scaffold010 rebuild transcript 687555 688124 . - . gene_id "RvY_14316"; transcript_id "RvY_14316.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 687555 688124 . - . gene_id "RvY_14316"; transcript_id "RvY_14316.1"; Scaffold010 rebuild transcript 688276 688658 . - . gene_id "RvY_14317"; transcript_id "RvY_14317.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 688276 688562 . - . gene_id "RvY_14317"; transcript_id "RvY_14317.1"; Scaffold010 rebuild exon 688637 688658 . - . gene_id "RvY_14317"; transcript_id "RvY_14317.1"; Scaffold010 rebuild transcript 689010 689627 . + . gene_id "RvY_14318"; transcript_id "RvY_14318.1"; annotation "hypothetical protein."; similar_genes "(1)YKX2_SCHPO(e-value:8.9e-10;bit-score:62.0)"; Scaffold010 rebuild exon 689010 689072 . + . gene_id "RvY_14318"; transcript_id "RvY_14318.1"; Scaffold010 rebuild exon 689277 689627 . + . gene_id "RvY_14318"; transcript_id "RvY_14318.1"; Scaffold010 rebuild transcript 689093 689338 . + . gene_id "RvY_14318"; transcript_id "RvY_14318.2"; annotation "hypothetical protein."; similar_genes "(1)YKX2_SCHPO(e-value:8.9e-10;bit-score:62.0)"; Scaffold010 rebuild exon 689093 689338 . + . gene_id "RvY_14318"; transcript_id "RvY_14318.2"; Scaffold010 rebuild transcript 690074 692113 . - . gene_id "RvY_14319"; transcript_id "RvY_14319.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[MFS_2] MFS/sugar transport protein|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold010 rebuild exon 690074 690824 . - . gene_id "RvY_14319"; transcript_id "RvY_14319.1"; Scaffold010 rebuild exon 691008 691933 . - . gene_id "RvY_14319"; transcript_id "RvY_14319.1"; Scaffold010 rebuild exon 691994 692113 . - . gene_id "RvY_14319"; transcript_id "RvY_14319.1"; Scaffold010 rebuild transcript 692611 694107 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; gene_name "GNPTG"; annotation "N-acetylglucosamine-1-phosphate transferase, gamma subunit"; Pfam "[PRKCSH_1] Glucosidase II beta subunit-like protein"; KO "K10087"; Scaffold010 rebuild exon 692611 692689 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild exon 692764 692980 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild exon 693063 693140 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild exon 693282 693378 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild exon 693483 693680 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild exon 693756 693965 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild exon 694033 694107 . + . gene_id "RvY_14320"; transcript_id "RvY_14320.1"; Scaffold010 rebuild transcript 694772 696453 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; gene_name "SNRNP40"; annotation "putative U5 small nuclear ribonucleoprotein 40 kDa protein"; Pfam "[WD40] WD domain, G-beta repeat"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K12857"; similar_genes "SNR40_BOVIN(e-value:5.4e-50;bit-score:195.0)"; Scaffold010 rebuild exon 694772 694915 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild exon 694982 695111 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild exon 695180 695273 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild exon 695503 695794 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild exon 695880 696000 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild exon 696058 696306 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild exon 696398 696453 . + . gene_id "RvY_14321"; transcript_id "RvY_14321.1"; Scaffold010 rebuild transcript 696560 698562 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; gene_name "K00471"; annotation "gamma-butyrobetaine dioxygenase [EC:1.14.11.1]"; Pfam "[CsiD]|[TauD] Taurine catabolism dioxygenase TauD, TfdA family"; CDD "gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism."; EC "EC1.14.11.1"; KO "K00471"; Scaffold010 rebuild exon 696560 696664 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 696737 696910 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 696984 697239 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 697308 697432 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 697648 697839 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 697924 698045 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 698127 698252 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild exon 698322 698562 . - . gene_id "RvY_14322"; transcript_id "RvY_14322.1"; Scaffold010 rebuild transcript 699180 710023 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; gene_name "UTX"; annotation "Lysine-specific demethylase 6A"; Pfam "[TPR_9] Tetratricopeptide repeat|[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[JmjC] JmjC domain, hydroxylase|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_6] Tetratricopeptide repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; EC "EC1.14.11.-"; KO "K11447"; similar_genes "KDM6A_HUMAN(e-value:9.8e-92;bit-score:334.0)"; Scaffold010 rebuild exon 699180 699271 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 699358 699424 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 699514 699646 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 699724 699773 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 699856 699914 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 703284 703459 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 703840 704194 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 704540 704797 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 704883 705060 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 705262 705560 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 705700 705991 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 706062 706248 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 706529 706853 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 709190 709652 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild exon 709841 710023 . + . gene_id "RvY_14323"; transcript_id "RvY_14323.1"; Scaffold010 rebuild transcript 711193 712042 . + . gene_id "RvY_14324"; transcript_id "RvY_14324.1"; gene_name "TPR"; annotation "hypothetical protein."; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_9] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; Scaffold010 rebuild exon 711193 711335 . + . gene_id "RvY_14324"; transcript_id "RvY_14324.1"; Scaffold010 rebuild exon 711405 711562 . + . gene_id "RvY_14324"; transcript_id "RvY_14324.1"; Scaffold010 rebuild exon 711900 712042 . + . gene_id "RvY_14324"; transcript_id "RvY_14324.1"; Scaffold010 rebuild transcript 713273 713519 . + . gene_id "RvY_14325"; transcript_id "RvY_14325.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 713273 713371 . + . gene_id "RvY_14325"; transcript_id "RvY_14325.1"; Scaffold010 rebuild exon 713454 713519 . + . gene_id "RvY_14325"; transcript_id "RvY_14325.1"; Scaffold010 rebuild transcript 714482 718430 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; gene_name "COG0429"; annotation "hypothetical protein."; Pfam "[Abhydrolase_5] Alpha/beta hydrolase family|[Abhydrolase_6] Alpha/beta hydrolase family|[Abhydrolase_1] alpha/beta hydrolase fold"; CDD "Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]"; EC "EC3.1.1.-"; KO "K13696"; similar_genes "ABHD3_BOVIN(e-value:2.0e-09;bit-score:60.0)"; Scaffold010 rebuild exon 714482 714834 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 714898 715112 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 715931 716113 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 716409 716499 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 716690 716745 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 716813 717124 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 717191 717488 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 717554 717927 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 718060 718226 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild exon 718326 718430 . - . gene_id "RvY_14326"; transcript_id "RvY_14326.1"; Scaffold010 rebuild transcript 719973 722142 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; gene_name "COG5141"; annotation "hypothetical protein."; Pfam "[PHD] PHD-finger"; CDD "PHD zinc finger-containing protein [General function prediction only]"; similar_genes "PHF10_HUMAN(e-value:1.0e-08;bit-score:58.0)"; Scaffold010 rebuild exon 719973 720069 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 720184 720245 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 720404 720580 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 720645 720757 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 720850 721078 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 721136 721475 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 721542 721723 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild exon 721837 722142 . - . gene_id "RvY_14327"; transcript_id "RvY_14327.1"; Scaffold010 rebuild transcript 724104 724502 . + . gene_id "RvY_14328"; transcript_id "RvY_14328.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 724104 724502 . + . gene_id "RvY_14328"; transcript_id "RvY_14328.1"; Scaffold010 rebuild transcript 725077 728406 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; gene_name "TFIP11"; annotation "putative Tuftelin-interacting protein 11"; Pfam "[G-patch]|[TIP_N] Tuftelin interacting protein N terminal|[GCFC] GC-rich sequence DNA-binding factor-like protein"; KO "K13103"; similar_genes "TFP11_BOVIN(e-value:2.7e-28;bit-score:123.0)"; Scaffold010 rebuild exon 725077 725185 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 725250 725449 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 725527 725651 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 725790 726139 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 726208 726472 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 726535 726667 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 726736 726920 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 727116 727394 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 727570 727880 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild exon 727955 728406 . + . gene_id "RvY_14329"; transcript_id "RvY_14329.1"; Scaffold010 rebuild transcript 728856 729283 . + . gene_id "RvY_14330"; transcript_id "RvY_14330.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 728856 729003 . + . gene_id "RvY_14330"; transcript_id "RvY_14330.1"; Scaffold010 rebuild exon 729087 729283 . + . gene_id "RvY_14330"; transcript_id "RvY_14330.1"; Scaffold010 rebuild transcript 729426 729596 . + . gene_id "RvY_14331"; transcript_id "RvY_14331.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 729426 729596 . + . gene_id "RvY_14331"; transcript_id "RvY_14331.1"; Scaffold010 rebuild transcript 733794 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; gene_name "(4,5)C2_1"; annotation "Double C2-like domain-containing protein beta"; Pfam "(1,2,3)[RPH3A_effect_N] Rabphilin-3A effector domain N-terminal|[C2]"; CDD "(4,5)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "DOC2B_RAT(e-value:1.1e-52;bit-score:204.0)"; Scaffold010 rebuild exon 733794 733888 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 734029 734181 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 734264 734398 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 734612 734698 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 734820 735220 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 735339 735449 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 736080 736376 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 736504 736550 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 736829 736861 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 736949 737415 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 737486 737567 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 737703 737799 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild exon 737899 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.1"; Scaffold010 rebuild transcript 733794 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; gene_name "(4,5)C2_1"; annotation "Double C2-like domain-containing protein beta"; Pfam "(1,2,3)[RPH3A_effect_N] Rabphilin-3A effector domain N-terminal|[C2]"; CDD "(4,5)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "DOC2B_RAT(e-value:1.1e-52;bit-score:204.0)"; Scaffold010 rebuild exon 733794 733888 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 734029 734181 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 734264 734396 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 734612 734698 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 734821 735220 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 735339 735449 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 736080 736376 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 736504 736550 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 736829 736861 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 736949 737415 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 737486 737567 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 737703 737799 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild exon 737899 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.2"; Scaffold010 rebuild transcript 734153 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; gene_name "(4,5)C2_1"; annotation "Double C2-like domain-containing protein beta"; Pfam "(1,2,3)[RPH3A_effect_N] Rabphilin-3A effector domain N-terminal|[C2]"; CDD "(4,5)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "DOC2B_RAT(e-value:1.1e-52;bit-score:204.0)"; Scaffold010 rebuild exon 734153 734181 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 734264 734396 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 734612 734698 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 734821 735220 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 735339 735449 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 736080 736376 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 736504 736550 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 736829 736861 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 736949 737415 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 737486 737567 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 737703 737799 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild exon 737899 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.3"; Scaffold010 rebuild transcript 734992 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; gene_name "(4,5)C2_1"; annotation "Double C2-like domain-containing protein beta"; Pfam "(1,2,3)[RPH3A_effect_N] Rabphilin-3A effector domain N-terminal|[C2]"; CDD "(4,5)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "DOC2B_RAT(e-value:1.1e-52;bit-score:204.0)"; Scaffold010 rebuild exon 734992 735220 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 735339 735449 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 736080 736376 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 736504 736550 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 736829 736861 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 736949 737415 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 737486 737567 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 737703 737799 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild exon 737899 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.4"; Scaffold010 rebuild transcript 736082 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; gene_name "(4,5)C2_1"; annotation "Double C2-like domain-containing protein beta"; Pfam "(1,2,3)[RPH3A_effect_N] Rabphilin-3A effector domain N-terminal|[C2]"; CDD "(4,5)Protein kinase C conserved region 2, subgroup 1; C2 Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (amongst others); some PKCs lack calcium dependence. Particular C2s appear to bind phospholipids, inositol polyphosphates,and intracellular proteins. Two distinct C2 topologies generated by permutation of the sequence with respect to the N- and C-terminal beta strands are seen. In this subgroup, containing synaptotagmins, specific protein kinases C (PKC) subtypes and other proteins, the N-terminal beta strand occupies the position of what is the C-terminal strand in subgroup 2."; similar_genes "DOC2B_RAT(e-value:1.1e-52;bit-score:204.0)"; Scaffold010 rebuild exon 736082 736376 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild exon 736504 736550 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild exon 736829 736861 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild exon 736949 737415 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild exon 737486 737567 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild exon 737703 737799 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild exon 737899 738029 . + . gene_id "RvY_14332"; transcript_id "RvY_14332.5"; Scaffold010 rebuild transcript 740433 742904 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; gene_name "P38"; annotation "Mitogen-activated protein kinase 14"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "The catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine."; EC "EC2.7.11.24"; KO "K04441"; similar_genes "MK14_MOUSE(e-value:2.1e-134;bit-score:476.0)"; Scaffold010 rebuild exon 740433 740614 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 740798 740927 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 741010 741075 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 741224 741328 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 741437 741466 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 741591 741684 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 741820 741888 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 741999 742070 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 742173 742252 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 742323 742401 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 742622 742798 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild exon 742864 742904 . + . gene_id "RvY_14333"; transcript_id "RvY_14333.1"; Scaffold010 rebuild transcript 743625 743879 . + . gene_id "RvY_14334"; transcript_id "RvY_14334.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 743625 743879 . + . gene_id "RvY_14334"; transcript_id "RvY_14334.1"; Scaffold010 rebuild transcript 744404 746047 . + . gene_id "RvY_14335"; transcript_id "RvY_14335.1"; gene_name "sacC"; annotation "putative Levanase"; Pfam "[Glyco_hydro_32C] Glycosyl hydrolases family 32 C terminal|[Glyco_hydro_32N] Glycosyl hydrolases family 32 N-terminal domain"; CDD "Glycosyl hydrolases family 32."; EC "EC3.2.1.65|EC3.2.1.80"; KO "K01212"; similar_genes "SACC_BACSU(e-value:8.2e-34;bit-score:141.0)"; Scaffold010 rebuild exon 744404 746047 . + . gene_id "RvY_14335"; transcript_id "RvY_14335.1"; Scaffold010 rebuild transcript 746306 747355 . - . gene_id "RvY_14336"; transcript_id "RvY_14336.1"; annotation "hypothetical protein."; Pfam "[7TM_GPCR_Srx] Serpentine type 7TM GPCR chemoreceptor Srx|[7tm_1] 7 transmembrane receptor (rhodopsin family)"; Scaffold010 rebuild exon 746306 747355 . - . gene_id "RvY_14336"; transcript_id "RvY_14336.1"; Scaffold010 rebuild transcript 749076 750233 . + . gene_id "RvY_14337"; transcript_id "RvY_14337.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 749076 749312 . + . gene_id "RvY_14337"; transcript_id "RvY_14337.1"; Scaffold010 rebuild exon 750171 750233 . + . gene_id "RvY_14337"; transcript_id "RvY_14337.1"; Scaffold010 rebuild transcript 750609 750839 . + . gene_id "RvY_14338"; transcript_id "RvY_14338.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 750609 750839 . + . gene_id "RvY_14338"; transcript_id "RvY_14338.1"; Scaffold010 rebuild transcript 753788 754210 . + . gene_id "RvY_14339"; transcript_id "RvY_14339.1"; gene_name "Glyco_32"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_32C] Glycosyl hydrolases family 32 C terminal"; CDD "Glycosyl hydrolases family 32."; Scaffold010 rebuild exon 753788 754210 . + . gene_id "RvY_14339"; transcript_id "RvY_14339.1"; Scaffold010 rebuild transcript 755067 756888 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; annotation "(1)putative Sodium-dependent dopamine transporter(2)hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "(1)NTDO_CAEEL(e-value:1.9e-39;bit-score:160.0)"; Scaffold010 rebuild exon 755067 755157 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 755245 755401 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 755479 755549 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 755843 755881 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 755960 756055 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 756165 756203 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 756284 756662 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild exon 756738 756888 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.1"; Scaffold010 rebuild transcript 756261 757775 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.2"; annotation "(1)putative Sodium-dependent dopamine transporter(2)hypothetical protein."; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "(1)NTDO_CAEEL(e-value:1.9e-39;bit-score:160.0)"; Scaffold010 rebuild exon 756261 756662 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.2"; Scaffold010 rebuild exon 756738 756876 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.2"; Scaffold010 rebuild exon 757666 757775 . + . gene_id "RvY_14340"; transcript_id "RvY_14340.2"; Scaffold010 rebuild transcript 758280 759414 . + . gene_id "RvY_14341"; transcript_id "RvY_14341.1"; annotation "putative Sodium-dependent dopamine transporter"; Pfam "[SNF] Sodium:neurotransmitter symporter family"; similar_genes "NTDO_CAEEL(e-value:3.5e-28;bit-score:123.0)"; Scaffold010 rebuild exon 758280 758570 . + . gene_id "RvY_14341"; transcript_id "RvY_14341.1"; Scaffold010 rebuild exon 758629 758728 . + . gene_id "RvY_14341"; transcript_id "RvY_14341.1"; Scaffold010 rebuild exon 758814 758914 . + . gene_id "RvY_14341"; transcript_id "RvY_14341.1"; Scaffold010 rebuild exon 759069 759236 . + . gene_id "RvY_14341"; transcript_id "RvY_14341.1"; Scaffold010 rebuild exon 759304 759414 . + . gene_id "RvY_14341"; transcript_id "RvY_14341.1"; Scaffold010 rebuild transcript 760246 760906 . + . gene_id "RvY_14342"; transcript_id "RvY_14342.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 760246 760488 . + . gene_id "RvY_14342"; transcript_id "RvY_14342.1"; Scaffold010 rebuild exon 760658 760906 . + . gene_id "RvY_14342"; transcript_id "RvY_14342.1"; Scaffold010 rebuild transcript 761195 762591 . - . gene_id "RvY_14343"; transcript_id "RvY_14343.1"; gene_name "STAMBP"; annotation "STAM-binding protein [EC:3.1.2.15]"; Pfam "[JAB] JAB1/Mov34/MPN/PAD-1 ubiquitin protease"; CDD "JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function."; EC "EC3.1.2.15"; KO "K11866"; similar_genes "STABP_XENLA(e-value:8.5e-21;bit-score:98.0)"; Scaffold010 rebuild exon 761195 761983 . - . gene_id "RvY_14343"; transcript_id "RvY_14343.1"; Scaffold010 rebuild exon 762217 762591 . - . gene_id "RvY_14343"; transcript_id "RvY_14343.1"; Scaffold010 rebuild transcript 763214 763529 . + . gene_id "RvY_14344"; transcript_id "RvY_14344.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 763214 763331 . + . gene_id "RvY_14344"; transcript_id "RvY_14344.1"; Scaffold010 rebuild exon 763396 763529 . + . gene_id "RvY_14344"; transcript_id "RvY_14344.1"; Scaffold010 rebuild transcript 763569 764705 . + . gene_id "RvY_14345"; transcript_id "RvY_14345.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 763569 764705 . + . gene_id "RvY_14345"; transcript_id "RvY_14345.1"; Scaffold010 rebuild transcript 765350 768896 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; gene_name "AXIN1"; annotation "axin 1"; Pfam "[DIX]|[RGS] Regulator of G protein signaling domain"; CDD "Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits."; KO "K02157"; Scaffold010 rebuild exon 765350 765389 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild exon 765568 766127 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild exon 766414 766901 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild exon 766976 767201 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild exon 767408 768045 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild exon 768226 768576 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild exon 768782 768896 . + . gene_id "RvY_14346"; transcript_id "RvY_14346.1"; Scaffold010 rebuild transcript 769210 771710 . - . gene_id "RvY_14347"; transcript_id "RvY_14347.1"; annotation "hypothetical protein."; Pfam "[Utp14] Utp14 protein"; KO "K14567"; similar_genes "UT14B_MOUSE(e-value:4.6e-11;bit-score:66.0)"; Scaffold010 rebuild exon 769210 770154 . - . gene_id "RvY_14347"; transcript_id "RvY_14347.1"; Scaffold010 rebuild exon 770247 771113 . - . gene_id "RvY_14347"; transcript_id "RvY_14347.1"; Scaffold010 rebuild exon 771312 771710 . - . gene_id "RvY_14347"; transcript_id "RvY_14347.1"; Scaffold010 rebuild transcript 772222 775703 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; gene_name "PPP1C"; annotation "Serine/threonine-protein phosphatase PP1-gamma catalytic subunit"; Pfam "[Metallophos] Calcineurin-like phosphoesterase"; CDD "Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members."; EC "EC3.1.3.16"; KO "K06269"; similar_genes "PP1G_HUMAN(e-value:6.1e-170;bit-score:594.0)"; Scaffold010 rebuild exon 772222 772265 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; Scaffold010 rebuild exon 772583 772725 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; Scaffold010 rebuild exon 773506 773736 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; Scaffold010 rebuild exon 773995 774323 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; Scaffold010 rebuild exon 775028 775162 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; Scaffold010 rebuild exon 775578 775703 . + . gene_id "RvY_14348"; transcript_id "RvY_14348.1"; Scaffold010 rebuild transcript 777174 777659 . - . gene_id "RvY_14349"; transcript_id "RvY_14349.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 777174 777659 . - . gene_id "RvY_14349"; transcript_id "RvY_14349.1"; Scaffold010 rebuild transcript 778308 783085 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; annotation "hypothetical protein."; Pfam "[Clathrin] Region in Clathrin and VPS|[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)"; Scaffold010 rebuild exon 778308 778480 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 778541 778666 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 778750 778945 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 779230 779443 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 779630 779961 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 780030 780141 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 780226 780351 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 780426 780565 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 780638 780865 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 780959 781420 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 781486 781659 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 781874 782152 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 782212 782516 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 782730 782982 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild exon 783035 783085 . - . gene_id "RvY_14350"; transcript_id "RvY_14350.1"; Scaffold010 rebuild transcript 783842 784867 . - . gene_id "RvY_14351"; transcript_id "RvY_14351.1"; annotation "hypothetical protein."; Pfam "[Med8] Mediator of RNA polymerase II transcription complex subunit 8"; KO "K15129"; Scaffold010 rebuild exon 783842 784011 . - . gene_id "RvY_14351"; transcript_id "RvY_14351.1"; Scaffold010 rebuild exon 784073 784307 . - . gene_id "RvY_14351"; transcript_id "RvY_14351.1"; Scaffold010 rebuild exon 784367 784511 . - . gene_id "RvY_14351"; transcript_id "RvY_14351.1"; Scaffold010 rebuild exon 784570 784781 . - . gene_id "RvY_14351"; transcript_id "RvY_14351.1"; Scaffold010 rebuild exon 784865 784867 . - . gene_id "RvY_14351"; transcript_id "RvY_14351.1"; Scaffold010 rebuild transcript 784676 785006 . + . gene_id "RvY_14352"; transcript_id "RvY_14352.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 784676 784722 . + . gene_id "RvY_14352"; transcript_id "RvY_14352.1"; Scaffold010 rebuild exon 784841 785006 . + . gene_id "RvY_14352"; transcript_id "RvY_14352.1"; Scaffold010 rebuild transcript 785518 786269 . - . gene_id "RvY_14353"; transcript_id "RvY_14353.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 785518 785713 . - . gene_id "RvY_14353"; transcript_id "RvY_14353.1"; Scaffold010 rebuild exon 786166 786269 . - . gene_id "RvY_14353"; transcript_id "RvY_14353.1"; Scaffold010 rebuild transcript 787276 787965 . - . gene_id "RvY_14354"; transcript_id "RvY_14354.1"; annotation "hypothetical protein."; similar_genes "K1C10_MOUSE(e-value:5.1e-08;bit-score:56.0)"; Scaffold010 rebuild exon 787276 787538 . - . gene_id "RvY_14354"; transcript_id "RvY_14354.1"; Scaffold010 rebuild exon 787603 787897 . - . gene_id "RvY_14354"; transcript_id "RvY_14354.1"; Scaffold010 rebuild exon 787963 787965 . - . gene_id "RvY_14354"; transcript_id "RvY_14354.1"; Scaffold010 rebuild transcript 788792 791289 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; gene_name "PRPF19"; annotation "pre-mRNA-processing factor 19 [EC:6.3.2.19]"; Pfam "[WD40] WD domain, G-beta repeat|[Prp19] Prp19/Pso4-like"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; EC "EC6.3.2.19"; KO "K10599"; similar_genes "PRP19_BOVIN(e-value:5.0e-21;bit-score:99.0)"; Scaffold010 rebuild exon 788792 789013 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 789227 789486 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 789594 789660 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 789742 789924 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 790007 790192 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 790274 790396 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 790481 790689 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 790781 790838 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 790899 790975 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 791041 791193 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild exon 791271 791289 . - . gene_id "RvY_14355"; transcript_id "RvY_14355.1"; Scaffold010 rebuild transcript 792182 793110 . + . gene_id "RvY_14356"; transcript_id "RvY_14356.1"; gene_name "CHMP2A"; annotation "Charged multivesicular body protein 2a"; Pfam "[Snf7]"; KO "K12191"; similar_genes "CHM2A_XENLA(e-value:6.5e-74;bit-score:275.0)"; Scaffold010 rebuild exon 792182 792349 . + . gene_id "RvY_14356"; transcript_id "RvY_14356.1"; Scaffold010 rebuild exon 792460 792639 . + . gene_id "RvY_14356"; transcript_id "RvY_14356.1"; Scaffold010 rebuild exon 792722 792852 . + . gene_id "RvY_14356"; transcript_id "RvY_14356.1"; Scaffold010 rebuild exon 792921 793110 . + . gene_id "RvY_14356"; transcript_id "RvY_14356.1"; Scaffold010 rebuild transcript 793641 795524 . - . gene_id "RvY_14357"; transcript_id "RvY_14357.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 793641 793768 . - . gene_id "RvY_14357"; transcript_id "RvY_14357.1"; Scaffold010 rebuild exon 794327 794576 . - . gene_id "RvY_14357"; transcript_id "RvY_14357.1"; Scaffold010 rebuild exon 794766 794962 . - . gene_id "RvY_14357"; transcript_id "RvY_14357.1"; Scaffold010 rebuild exon 795020 795374 . - . gene_id "RvY_14357"; transcript_id "RvY_14357.1"; Scaffold010 rebuild exon 795432 795524 . - . gene_id "RvY_14357"; transcript_id "RvY_14357.1"; Scaffold010 rebuild transcript 798705 801319 . + . gene_id "RvY_14358"; transcript_id "RvY_14358.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 798705 798910 . + . gene_id "RvY_14358"; transcript_id "RvY_14358.1"; Scaffold010 rebuild exon 799419 799780 . + . gene_id "RvY_14358"; transcript_id "RvY_14358.1"; Scaffold010 rebuild exon 800805 801319 . + . gene_id "RvY_14358"; transcript_id "RvY_14358.1"; Scaffold010 rebuild transcript 801371 801580 . - . gene_id "RvY_14359"; transcript_id "RvY_14359.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 801371 801580 . - . gene_id "RvY_14359"; transcript_id "RvY_14359.1"; Scaffold010 rebuild transcript 801800 803603 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; annotation "hypothetical protein."; Pfam "[RRS1] Ribosome biogenesis regulatory protein (RRS1)"; KO "K14852"; Scaffold010 rebuild exon 801800 801894 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 801963 802074 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 802157 802195 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 802599 802782 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 802859 802963 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 803038 803201 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 803263 803390 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild exon 803450 803603 . + . gene_id "RvY_14360"; transcript_id "RvY_14360.1"; Scaffold010 rebuild transcript 803892 804733 . - . gene_id "RvY_14361"; transcript_id "RvY_14361.1"; gene_name "SNF8"; annotation "putative Vacuolar-sorting protein SNF8"; Pfam "[EAP30] EAP30/Vps36 family"; KO "K12188"; similar_genes "SNF8_RAT(e-value:1.5e-45;bit-score:180.0)"; Scaffold010 rebuild exon 803892 804310 . - . gene_id "RvY_14361"; transcript_id "RvY_14361.1"; Scaffold010 rebuild exon 804388 804733 . - . gene_id "RvY_14361"; transcript_id "RvY_14361.1"; Scaffold010 rebuild transcript 805289 817832 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; gene_name "MRS6"; annotation "putative Vacuolar protein sorting-associated protein 13B"; Pfam "[Chorein_N] N-terminal region of Chorein, a TM vesicle-mediated sorter"; CDD "Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]"; similar_genes "VP13B_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold010 rebuild exon 805289 805789 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 806011 806407 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 806467 806723 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 806788 806988 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 807055 807289 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 807425 807601 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 807663 807835 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 807933 808112 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 808184 808505 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 808578 808697 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 808778 808869 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 808950 809016 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 809111 809652 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 809742 809892 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 810699 810853 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 810922 811106 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 811179 811336 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 811490 811839 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 811902 812066 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 812129 812284 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 812359 812616 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 812702 812955 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 813137 813701 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 813762 813905 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 813975 814589 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 814869 815204 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 815330 815696 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 815902 816264 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 816442 816627 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 816696 816893 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 817193 817295 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild exon 817358 817832 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.1"; Scaffold010 rebuild transcript 805289 817832 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; gene_name "MRS6"; annotation "putative Vacuolar protein sorting-associated protein 13B"; Pfam "[Chorein_N] N-terminal region of Chorein, a TM vesicle-mediated sorter"; CDD "Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]"; similar_genes "VP13B_HUMAN(e-value:1.0e-27;bit-score:121.0)"; Scaffold010 rebuild exon 805289 805789 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 806011 806407 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 806467 806723 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 806788 806988 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 807055 807289 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 807425 807601 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 807663 807835 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 807933 808112 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 808184 808505 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 808578 808697 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 808778 808821 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 808950 809016 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 809111 809652 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 809742 809892 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 810699 810853 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 810922 811106 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 811179 811336 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 811490 811839 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 811902 812066 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 812129 812284 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 812359 812616 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 812702 812955 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 813137 813701 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 813762 813905 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 813975 814589 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 814869 815204 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 815330 815696 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 815902 816264 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 816442 816627 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 816696 816893 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 817193 817295 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild exon 817358 817832 . + . gene_id "RvY_14362"; transcript_id "RvY_14362.2"; Scaffold010 rebuild transcript 818359 818910 . - . gene_id "RvY_14363"; transcript_id "RvY_14363.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 818359 818910 . - . gene_id "RvY_14363"; transcript_id "RvY_14363.1"; Scaffold010 rebuild transcript 818956 819638 . - . gene_id "RvY_14364"; transcript_id "RvY_14364.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 818956 819318 . - . gene_id "RvY_14364"; transcript_id "RvY_14364.1"; Scaffold010 rebuild exon 819438 819638 . - . gene_id "RvY_14364"; transcript_id "RvY_14364.1"; Scaffold010 rebuild transcript 819764 820468 . - . gene_id "RvY_14365"; transcript_id "RvY_14365.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 819764 820090 . - . gene_id "RvY_14365"; transcript_id "RvY_14365.1"; Scaffold010 rebuild exon 820286 820468 . - . gene_id "RvY_14365"; transcript_id "RvY_14365.1"; Scaffold010 rebuild transcript 824421 833425 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel"; similar_genes "KCNKI_MOUSE(e-value:4.4e-07;bit-score:53.0)"; Scaffold010 rebuild exon 824421 824567 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild exon 825139 825252 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild exon 825520 825967 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild exon 831887 831974 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild exon 832087 832376 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild exon 832437 833040 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild exon 833191 833425 . + . gene_id "RvY_14366"; transcript_id "RvY_14366.1"; Scaffold010 rebuild transcript 826796 826981 . - . gene_id "RvY_14367"; transcript_id "RvY_14367.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 826796 826981 . - . gene_id "RvY_14367"; transcript_id "RvY_14367.1"; Scaffold010 rebuild transcript 833892 837424 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; similar_genes "SO4C1_MOUSE(e-value:3.4e-07;bit-score:53.0)"; Scaffold010 rebuild exon 833892 834017 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 834107 834285 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 834381 834445 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 834523 834779 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 834840 834981 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 835039 835306 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 835375 835464 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 835534 835651 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 835729 835916 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 836092 836601 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild exon 837082 837424 . - . gene_id "RvY_14368"; transcript_id "RvY_14368.1"; Scaffold010 rebuild transcript 837993 838527 . - . gene_id "RvY_14369"; transcript_id "RvY_14369.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 837993 838082 . - . gene_id "RvY_14369"; transcript_id "RvY_14369.1"; Scaffold010 rebuild exon 838168 838527 . - . gene_id "RvY_14369"; transcript_id "RvY_14369.1"; Scaffold010 rebuild transcript 838316 839704 . + . gene_id "RvY_14370"; transcript_id "RvY_14370.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 838316 838350 . + . gene_id "RvY_14370"; transcript_id "RvY_14370.1"; Scaffold010 rebuild exon 839296 839704 . + . gene_id "RvY_14370"; transcript_id "RvY_14370.1"; Scaffold010 rebuild transcript 839339 839704 . + . gene_id "RvY_14370"; transcript_id "RvY_14370.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 839339 839704 . + . gene_id "RvY_14370"; transcript_id "RvY_14370.2"; Scaffold010 rebuild transcript 840820 846697 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; annotation "Coronin-6"; Pfam "[WD40] WD domain, G-beta repeat|[DUF1900]|[DUF1899]"; KO "K13887"; similar_genes "CORO6_HUMAN(e-value:2.6e-60;bit-score:229.0)"; Scaffold010 rebuild exon 840820 841017 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 844314 844566 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 844641 844819 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 844883 844999 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 845069 845173 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 845270 845311 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 845394 845561 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 845769 845873 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 845939 846169 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild exon 846536 846697 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.1"; Scaffold010 rebuild transcript 840820 846697 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; annotation "Coronin-6"; Pfam "[WD40] WD domain, G-beta repeat|[DUF1900]|[DUF1899]"; KO "K13887"; similar_genes "CORO6_HUMAN(e-value:2.6e-60;bit-score:229.0)"; Scaffold010 rebuild exon 840820 841017 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 844314 844566 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 844641 844819 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 844883 844999 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 845069 845173 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 845270 845311 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 845394 845561 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 845769 845873 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 845939 846052 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild exon 846536 846697 . + . gene_id "RvY_14371"; transcript_id "RvY_14371.2"; Scaffold010 rebuild transcript 849306 850904 . - . gene_id "RvY_14372"; transcript_id "RvY_14372.1"; gene_name "HOX"; annotation "Protein sine oculis"; Pfam "[Homeobox_KN] Homeobox KN domain|[Homeobox]"; CDD "Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes"; KO "K15614"; similar_genes "SO_DROME(e-value:1.5e-62;bit-score:237.0)"; Scaffold010 rebuild exon 849306 849663 . - . gene_id "RvY_14372"; transcript_id "RvY_14372.1"; Scaffold010 rebuild exon 850204 850904 . - . gene_id "RvY_14372"; transcript_id "RvY_14372.1"; Scaffold010 rebuild transcript 856497 858108 . + . gene_id "RvY_14373"; transcript_id "RvY_14373.1"; annotation "hypothetical protein."; Pfam "[Sad1_UNC] Sad1 / UNC-like C-terminal"; Scaffold010 rebuild exon 856497 856582 . + . gene_id "RvY_14373"; transcript_id "RvY_14373.1"; Scaffold010 rebuild exon 856652 856805 . + . gene_id "RvY_14373"; transcript_id "RvY_14373.1"; Scaffold010 rebuild exon 856918 857043 . + . gene_id "RvY_14373"; transcript_id "RvY_14373.1"; Scaffold010 rebuild exon 857243 857614 . + . gene_id "RvY_14373"; transcript_id "RvY_14373.1"; Scaffold010 rebuild exon 857872 858108 . + . gene_id "RvY_14373"; transcript_id "RvY_14373.1"; Scaffold010 rebuild transcript 859431 861843 . + . gene_id "RvY_14374"; transcript_id "RvY_14374.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 859431 860681 . + . gene_id "RvY_14374"; transcript_id "RvY_14374.1"; Scaffold010 rebuild exon 861068 861335 . + . gene_id "RvY_14374"; transcript_id "RvY_14374.1"; Scaffold010 rebuild exon 861611 861843 . + . gene_id "RvY_14374"; transcript_id "RvY_14374.1"; Scaffold010 rebuild transcript 859431 860702 . + . gene_id "RvY_14374"; transcript_id "RvY_14374.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 859431 860702 . + . gene_id "RvY_14374"; transcript_id "RvY_14374.2"; Scaffold010 rebuild transcript 861064 861822 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 861064 861397 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.1"; Scaffold010 rebuild exon 861755 861822 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.1"; Scaffold010 rebuild transcript 861387 862181 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 861387 861397 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.2"; Scaffold010 rebuild exon 861755 861914 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.2"; Scaffold010 rebuild exon 862005 862181 . - . gene_id "RvY_14375"; transcript_id "RvY_14375.2"; Scaffold010 rebuild transcript 862881 863810 . - . gene_id "RvY_14376"; transcript_id "RvY_14376.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold010 rebuild exon 862881 863431 . - . gene_id "RvY_14376"; transcript_id "RvY_14376.1"; Scaffold010 rebuild exon 863492 863810 . - . gene_id "RvY_14376"; transcript_id "RvY_14376.1"; Scaffold010 rebuild transcript 865409 866383 . - . gene_id "RvY_14377"; transcript_id "RvY_14377.1"; annotation "hypothetical protein."; Pfam "[HTH_psq] helix-turn-helix, Psq domain"; Scaffold010 rebuild exon 865409 865980 . - . gene_id "RvY_14377"; transcript_id "RvY_14377.1"; Scaffold010 rebuild exon 866065 866383 . - . gene_id "RvY_14377"; transcript_id "RvY_14377.1"; Scaffold010 rebuild transcript 866385 867044 . + . gene_id "RvY_14378"; transcript_id "RvY_14378.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 866385 866414 . + . gene_id "RvY_14378"; transcript_id "RvY_14378.1"; Scaffold010 rebuild exon 866625 867044 . + . gene_id "RvY_14378"; transcript_id "RvY_14378.1"; Scaffold010 rebuild transcript 867790 868020 . + . gene_id "RvY_14379"; transcript_id "RvY_14379.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 867790 868020 . + . gene_id "RvY_14379"; transcript_id "RvY_14379.1"; Scaffold010 rebuild transcript 868261 870867 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; gene_name "CCT8"; annotation "T-complex protein 1 subunit theta"; Pfam "[Cpn60_TCP1] TCP-1/cpn60 chaperonin family"; CDD "T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes."; KO "K09500"; similar_genes "TCPQ_CHICK(e-value:1.1e-107;bit-score:387.0)"; Scaffold010 rebuild exon 868261 868449 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 868520 868684 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 868918 868989 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 869056 869433 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 869639 869913 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 869988 870116 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 870175 870244 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 870364 870495 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 870561 870640 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild exon 870717 870867 . - . gene_id "RvY_14380"; transcript_id "RvY_14380.1"; Scaffold010 rebuild transcript 871134 871559 . + . gene_id "RvY_14381"; transcript_id "RvY_14381.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 871134 871559 . + . gene_id "RvY_14381"; transcript_id "RvY_14381.1"; Scaffold010 rebuild transcript 871206 871559 . + . gene_id "RvY_14381"; transcript_id "RvY_14381.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 871206 871559 . + . gene_id "RvY_14381"; transcript_id "RvY_14381.2"; Scaffold010 rebuild transcript 871797 876368 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 871797 871989 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 872053 872285 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 872359 872497 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 872574 872651 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 872744 872795 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 872865 872936 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 873021 873076 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 873155 873476 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 873703 874000 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 874402 874965 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 875043 875111 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 875180 875320 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild exon 876258 876368 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.1"; Scaffold010 rebuild transcript 871797 876368 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 871797 871989 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 872053 872285 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 872359 872497 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 872574 872651 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 872744 872795 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 872865 872936 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 873021 873076 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 873155 873476 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 873703 874000 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 874402 874965 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 875043 875111 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 875180 875320 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild exon 876261 876368 . + . gene_id "RvY_14382"; transcript_id "RvY_14382.2"; Scaffold010 rebuild transcript 875651 875857 . - . gene_id "RvY_14383"; transcript_id "RvY_14383.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 875651 875857 . - . gene_id "RvY_14383"; transcript_id "RvY_14383.1"; Scaffold010 rebuild transcript 876785 878419 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.1"; annotation "hypothetical protein."; Pfam "[MazG] MazG nucleotide pyrophosphohydrolase domain"; EC "(1)EC3.6.1.12"; similar_genes "(1)DCTP1_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold010 rebuild exon 876785 877075 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.1"; Scaffold010 rebuild exon 877293 877347 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.1"; Scaffold010 rebuild exon 877416 877934 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.1"; Scaffold010 rebuild exon 877990 878232 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.1"; Scaffold010 rebuild exon 878322 878419 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.1"; Scaffold010 rebuild transcript 877412 878419 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.2"; annotation "hypothetical protein."; Pfam "[MazG] MazG nucleotide pyrophosphohydrolase domain"; EC "(1)EC3.6.1.12"; similar_genes "(1)DCTP1_BOVIN(e-value:1.2e-07;bit-score:55.0)"; Scaffold010 rebuild exon 877412 877934 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.2"; Scaffold010 rebuild exon 877990 878232 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.2"; Scaffold010 rebuild exon 878322 878419 . - . gene_id "RvY_14384"; transcript_id "RvY_14384.2"; Scaffold010 rebuild transcript 878876 880662 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 878876 879264 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; Scaffold010 rebuild exon 879489 879815 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; Scaffold010 rebuild exon 879912 880033 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; Scaffold010 rebuild exon 880088 880170 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; Scaffold010 rebuild exon 880237 880447 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; Scaffold010 rebuild exon 880511 880662 . + . gene_id "RvY_14385"; transcript_id "RvY_14385.1"; Scaffold010 rebuild transcript 880975 884290 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; gene_name "2A0119"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; Scaffold010 rebuild exon 880975 881202 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 881266 881459 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 881633 881853 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 881934 882060 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 882262 882565 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 883056 883225 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 883328 883388 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild exon 883775 884290 . - . gene_id "RvY_14386"; transcript_id "RvY_14386.1"; Scaffold010 rebuild transcript 885864 888483 . + . gene_id "RvY_14387"; transcript_id "RvY_14387.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 885864 885881 . + . gene_id "RvY_14387"; transcript_id "RvY_14387.1"; Scaffold010 rebuild exon 885943 886321 . + . gene_id "RvY_14387"; transcript_id "RvY_14387.1"; Scaffold010 rebuild exon 886551 887092 . + . gene_id "RvY_14387"; transcript_id "RvY_14387.1"; Scaffold010 rebuild exon 887177 887549 . + . gene_id "RvY_14387"; transcript_id "RvY_14387.1"; Scaffold010 rebuild exon 888032 888483 . + . gene_id "RvY_14387"; transcript_id "RvY_14387.1"; Scaffold010 rebuild transcript 889453 889950 . - . gene_id "RvY_14388"; transcript_id "RvY_14388.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 889453 889950 . - . gene_id "RvY_14388"; transcript_id "RvY_14388.1"; Scaffold010 rebuild transcript 891524 893514 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.1"; annotation "hypothetical protein."; Pfam "[Med15] ARC105 or Med15 subunit of Mediator complex non-fungal"; Scaffold010 rebuild exon 891524 891621 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.1"; Scaffold010 rebuild exon 891774 891861 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.1"; Scaffold010 rebuild exon 891930 891984 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.1"; Scaffold010 rebuild exon 892612 893305 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.1"; Scaffold010 rebuild exon 893463 893514 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.1"; Scaffold010 rebuild transcript 891524 893514 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.2"; annotation "hypothetical protein."; Pfam "[Med15] ARC105 or Med15 subunit of Mediator complex non-fungal"; Scaffold010 rebuild exon 891524 891621 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.2"; Scaffold010 rebuild exon 891774 891861 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.2"; Scaffold010 rebuild exon 891930 891984 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.2"; Scaffold010 rebuild exon 892624 893305 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.2"; Scaffold010 rebuild exon 893463 893514 . + . gene_id "RvY_14389"; transcript_id "RvY_14389.2"; Scaffold010 rebuild transcript 894009 894746 . - . gene_id "RvY_14390"; transcript_id "RvY_14390.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 894009 894746 . - . gene_id "RvY_14390"; transcript_id "RvY_14390.1"; Scaffold010 rebuild transcript 895301 895695 . - . gene_id "RvY_14391"; transcript_id "RvY_14391.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 895301 895436 . - . gene_id "RvY_14391"; transcript_id "RvY_14391.1"; Scaffold010 rebuild exon 895511 895695 . - . gene_id "RvY_14391"; transcript_id "RvY_14391.1"; Scaffold010 rebuild transcript 896279 902025 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; gene_name "LARS"; annotation "Putative leucyl-tRNA synthetase, cytoplasmic"; Pfam "[tRNA-synt_1g] tRNA synthetases class I (M)|[Anticodon_1] Anticodon-binding domain of tRNA|[tRNA-synt_1e] tRNA synthetases class I (C) catalytic domain|[tRNA-synt_1] tRNA synthetases class I (I, L, M and V)"; CDD "leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS."; EC "EC6.1.1.4"; KO "K01869"; similar_genes "SYLC_SCHPO(e-value:7.8e-62;bit-score:234.0)"; Scaffold010 rebuild exon 896279 896881 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 897583 898333 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 898646 898781 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 899044 899527 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 899717 899767 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 899969 900133 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 900203 900446 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 900508 900575 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 900688 900864 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 901048 901209 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 901363 901512 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 901588 901668 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 901744 901834 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild exon 901904 902025 . - . gene_id "RvY_14392"; transcript_id "RvY_14392.1"; Scaffold010 rebuild transcript 902656 904287 . + . gene_id "RvY_14393"; transcript_id "RvY_14393.1"; gene_name "SMC_prok_B"; annotation "hypothetical protein."; CDD "chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle."; Scaffold010 rebuild exon 902656 903051 . + . gene_id "RvY_14393"; transcript_id "RvY_14393.1"; Scaffold010 rebuild exon 903108 903557 . + . gene_id "RvY_14393"; transcript_id "RvY_14393.1"; Scaffold010 rebuild exon 903619 904287 . + . gene_id "RvY_14393"; transcript_id "RvY_14393.1"; Scaffold010 rebuild transcript 904827 912019 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; gene_name "IP_trans"; annotation "Membrane-associated phosphatidylinositol transfer protein 1"; Pfam "[IP_trans] Phosphatidylinositol transfer protein|[LNS2] LNS2 (Lipin/Ned1/Smp2)|[DDHD]"; CDD "Phosphatidylinositol transfer protein. Along with the structurally unrelated Sec14p family (found in pfam00650), this family can bind/exchange one molecule of phosphatidylinositol (PI) or phosphatidylcholine (PC) and thus aids their transfer between different membrane compartments. There are three sub-families - all share an N-terminal PITP-like domain, whose sequence is highly conserved. It is described as consisting of three regions. The N-terminal region is thought to bind the lipid and contains two helices and an eight-stranded, mostly antiparallel beta-sheet. An intervening loop region, which is thought to play a role in protein-protein interactions, separates this from the C-terminal region, which exhibits the greatest sequence variation and may be involved in membrane binding. PITP alpha has a 16-fold greater affinity for PI than PC. Together with PITP beta, it is expressed ubiquitously in all tissues."; similar_genes "PITM1_MOUSE(e-value:6.8e-80;bit-score:294.0)"; Scaffold010 rebuild exon 904827 905192 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 905715 905843 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 905910 906076 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 906142 906308 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 906371 906636 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 906862 906975 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 907050 907198 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 907260 907541 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 908033 908345 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 908604 909036 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 909351 909666 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 909811 909921 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 910237 910329 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 910416 910616 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 910709 910846 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 911283 911853 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild exon 911942 912019 . - . gene_id "RvY_14394"; transcript_id "RvY_14394.1"; Scaffold010 rebuild transcript 913518 916050 . - . gene_id "RvY_14395"; transcript_id "RvY_14395.1"; gene_name "TFIID5"; annotation "putative Transcription initiation factor TFIID subunit 6"; Pfam "[TAF] TATA box binding protein associated factor (TAF)|[DUF1546]"; CDD "Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]"; KO "K03131"; similar_genes "TAF6_DROME(e-value:4.6e-45;bit-score:179.0)"; Scaffold010 rebuild exon 913518 914054 . - . gene_id "RvY_14395"; transcript_id "RvY_14395.1"; Scaffold010 rebuild exon 914144 914269 . - . gene_id "RvY_14395"; transcript_id "RvY_14395.1"; Scaffold010 rebuild exon 914378 914510 . - . gene_id "RvY_14395"; transcript_id "RvY_14395.1"; Scaffold010 rebuild exon 914590 915035 . - . gene_id "RvY_14395"; transcript_id "RvY_14395.1"; Scaffold010 rebuild exon 915178 916050 . - . gene_id "RvY_14395"; transcript_id "RvY_14395.1"; Scaffold010 rebuild transcript 916770 921326 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; gene_name "GROUCHO"; annotation "Transducin-like enhancer protein 4"; Pfam "[WD40] WD domain, G-beta repeat|[TLE_N] Groucho/TLE N-terminal Q-rich domain"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K04497"; similar_genes "TLE4_XENLA(e-value:6.3e-87;bit-score:318.0)"; Scaffold010 rebuild exon 916770 917303 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; Scaffold010 rebuild exon 917463 917738 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; Scaffold010 rebuild exon 917927 918440 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; Scaffold010 rebuild exon 918751 919077 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; Scaffold010 rebuild exon 919404 919980 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; Scaffold010 rebuild exon 920891 921326 . + . gene_id "RvY_14396"; transcript_id "RvY_14396.1"; Scaffold010 rebuild transcript 922087 922853 . + . gene_id "RvY_14397"; transcript_id "RvY_14397.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 922087 922257 . + . gene_id "RvY_14397"; transcript_id "RvY_14397.1"; Scaffold010 rebuild exon 922773 922853 . + . gene_id "RvY_14397"; transcript_id "RvY_14397.1"; Scaffold010 rebuild transcript 923346 932251 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; gene_name "HIP1"; annotation "putative Huntingtin-interacting protein 1"; Pfam "[ANTH]|[ENTH]|[I_LWEQ] I/LWEQ domain"; CDD "I/LWEQ domain. Thought to possess an F-actin binding function."; KO "K04559"; similar_genes "HIP1_HUMAN(e-value:1.8e-46;bit-score:183.0)"; Scaffold010 rebuild exon 923346 923539 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 923608 923837 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 923907 924070 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 924261 924598 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 924693 924800 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 924894 924971 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 925053 925142 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 925212 925392 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 927107 927340 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 927400 927633 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 927830 927967 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 928051 928208 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 928297 928375 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 928469 928625 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 928709 928794 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 929037 929162 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 929290 929423 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 929511 929713 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 929796 929872 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 929960 930040 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 930120 930386 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild exon 932132 932251 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.1"; Scaffold010 rebuild transcript 923346 932251 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; gene_name "HIP1"; annotation "putative Huntingtin-interacting protein 1"; Pfam "[ANTH]|[ENTH]|[I_LWEQ] I/LWEQ domain"; CDD "I/LWEQ domain. Thought to possess an F-actin binding function."; KO "K04559"; similar_genes "HIP1_HUMAN(e-value:1.8e-46;bit-score:183.0)"; Scaffold010 rebuild exon 923346 923539 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 923608 923837 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 923907 924070 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 924261 924598 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 924693 924800 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 924894 924971 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 925053 925142 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 925212 925392 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 927830 927967 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 928051 928208 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 928297 928375 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 928469 928625 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 928709 928794 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 929037 929162 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 929290 929423 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 929511 929713 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 929796 929872 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 929960 930040 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 930120 930386 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild exon 932132 932251 . - . gene_id "RvY_14398"; transcript_id "RvY_14398.2"; Scaffold010 rebuild transcript 932848 933360 . + . gene_id "RvY_14399"; transcript_id "RvY_14399.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 932848 933360 . + . gene_id "RvY_14399"; transcript_id "RvY_14399.1"; Scaffold010 rebuild transcript 934620 934976 . + . gene_id "RvY_14400"; transcript_id "RvY_14400.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 934620 934976 . + . gene_id "RvY_14400"; transcript_id "RvY_14400.1"; Scaffold010 rebuild transcript 936422 938042 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; annotation "putative Nucleolar complex protein 4 homolog"; Pfam "[CBF] CBF/Mak21 family"; KO "K14771"; similar_genes "NOC4L_HUMAN(e-value:5.3e-29;bit-score:125.0)"; Scaffold010 rebuild exon 936422 936556 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 936624 936827 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 936908 937019 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 937114 937285 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 937349 937512 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 937579 937661 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 937728 937841 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild exon 937926 938042 . + . gene_id "RvY_14401"; transcript_id "RvY_14401.1"; Scaffold010 rebuild transcript 938292 940310 . - . gene_id "RvY_14402"; transcript_id "RvY_14402.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 938292 938671 . - . gene_id "RvY_14402"; transcript_id "RvY_14402.1"; Scaffold010 rebuild exon 938857 939264 . - . gene_id "RvY_14402"; transcript_id "RvY_14402.1"; Scaffold010 rebuild exon 939428 939862 . - . gene_id "RvY_14402"; transcript_id "RvY_14402.1"; Scaffold010 rebuild exon 939983 940310 . - . gene_id "RvY_14402"; transcript_id "RvY_14402.1"; Scaffold010 rebuild transcript 940800 944542 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 940800 940818 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 940904 941121 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 941258 941347 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 941466 941661 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 941746 941880 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 941979 942179 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 942244 942509 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 942581 943886 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 944079 944230 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild exon 944315 944542 . + . gene_id "RvY_14403"; transcript_id "RvY_14403.1"; Scaffold010 rebuild transcript 944864 945174 . - . gene_id "RvY_14404"; transcript_id "RvY_14404.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 944864 945039 . - . gene_id "RvY_14404"; transcript_id "RvY_14404.1"; Scaffold010 rebuild exon 945114 945174 . - . gene_id "RvY_14404"; transcript_id "RvY_14404.1"; Scaffold010 rebuild transcript 945629 948389 . - . gene_id "RvY_14405"; transcript_id "RvY_14405.1"; gene_name "EXOC3"; annotation "putative Exocyst complex component 3"; Pfam "[Sec6] Exocyst complex component Sec6"; KO "K06110"; similar_genes "EXOC3_HUMAN(e-value:8.0e-30;bit-score:128.0)"; Scaffold010 rebuild exon 945629 946418 . - . gene_id "RvY_14405"; transcript_id "RvY_14405.1"; Scaffold010 rebuild exon 946670 947409 . - . gene_id "RvY_14405"; transcript_id "RvY_14405.1"; Scaffold010 rebuild exon 947580 948389 . - . gene_id "RvY_14405"; transcript_id "RvY_14405.1"; Scaffold010 rebuild transcript 950156 951527 . - . gene_id "RvY_14406"; transcript_id "RvY_14406.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 950156 950275 . - . gene_id "RvY_14406"; transcript_id "RvY_14406.1"; Scaffold010 rebuild exon 951435 951527 . - . gene_id "RvY_14406"; transcript_id "RvY_14406.1"; Scaffold010 rebuild transcript 952087 964404 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; gene_name "SRCAP"; annotation "Helicase SRCAP"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain"; EC "EC3.6.1.-"; KO "K11661"; similar_genes "SRCAP_HUMAN(e-value:4.7e-83;bit-score:305.0)"; Scaffold010 rebuild exon 952087 952632 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 952695 952880 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 953005 953145 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 953214 953394 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 953679 953966 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 954035 954087 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 954277 954366 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 954499 954813 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 955004 955366 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 955537 955866 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 956162 956528 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 956784 957104 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 957381 957822 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 958039 958269 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 958348 958462 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 958644 958979 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 959271 959399 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 960411 960446 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 960986 961145 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 961207 961454 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 961522 961776 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 961873 962439 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 962634 963248 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 963440 963712 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild exon 964003 964404 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.1"; Scaffold010 rebuild transcript 952087 959792 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; gene_name "SRCAP"; annotation "Helicase SRCAP"; Pfam "[SNF2_N] SNF2 family N-terminal domain|[Helicase_C] Helicase conserved C-terminal domain"; EC "EC3.6.1.-"; KO "K11661"; similar_genes "SRCAP_HUMAN(e-value:4.7e-83;bit-score:305.0)"; Scaffold010 rebuild exon 952087 952632 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 952695 952880 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 953005 953145 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 953214 953394 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 953679 953966 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 954035 954087 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 954277 954366 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 954499 954813 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 955004 955366 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 955537 955866 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 956162 956528 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 956784 957104 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 957381 957822 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 958039 958269 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 958348 958462 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 958644 958979 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild exon 959271 959792 . + . gene_id "RvY_14407"; transcript_id "RvY_14407.2"; Scaffold010 rebuild transcript 965655 966305 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 965655 965874 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.1"; Scaffold010 rebuild exon 965953 966137 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.1"; Scaffold010 rebuild exon 966195 966305 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.1"; Scaffold010 rebuild transcript 966197 966531 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 966197 966386 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.2"; Scaffold010 rebuild exon 966452 966531 . - . gene_id "RvY_14408"; transcript_id "RvY_14408.2"; Scaffold010 rebuild transcript 967774 969823 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; gene_name "WSB1"; annotation "WD repeat and SOCS box-containing protein 1"; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; KO "K10341"; similar_genes "WSB1_DANRE(e-value:5.1e-06;bit-score:49.0)"; Scaffold010 rebuild exon 967774 967939 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild exon 968041 968151 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild exon 968265 968551 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild exon 968745 968974 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild exon 969157 969383 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild exon 969502 969673 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild exon 969787 969823 . - . gene_id "RvY_14409"; transcript_id "RvY_14409.1"; Scaffold010 rebuild transcript 970781 973692 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; gene_name "RPS6KB"; annotation "Ribosomal protein S6 kinase beta-1"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_p70S6K: Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta)."; EC "EC2.7.11.1"; KO "K04688"; similar_genes "KS6B1_HUMAN(e-value:1.7e-144;bit-score:509.0)"; Scaffold010 rebuild exon 970781 970879 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 970971 971002 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 971260 971368 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 971585 971653 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 971739 971826 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 971893 971987 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972055 972164 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972241 972321 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972411 972434 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972505 972595 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972714 972755 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972836 972901 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 972979 973119 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 973202 973309 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild exon 973537 973692 . + . gene_id "RvY_14410"; transcript_id "RvY_14410.1"; Scaffold010 rebuild transcript 974171 976071 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 974171 974592 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 974650 974914 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 974998 975029 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 975105 975167 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 975236 975277 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 975391 975429 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 975516 975599 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 975693 975731 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 975804 975924 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild exon 976030 976071 . - . gene_id "RvY_14411"; transcript_id "RvY_14411.1"; Scaffold010 rebuild transcript 976454 977059 . - . gene_id "RvY_14412"; transcript_id "RvY_14412.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 976454 977059 . - . gene_id "RvY_14412"; transcript_id "RvY_14412.1"; Scaffold010 rebuild transcript 977964 979344 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; gene_name "(1,2)metK(3,4)rfbD"; annotation "(1,2)S-adenosylmethionine synthetase [EC:2.5.1.6](3,4)dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|(1,4)[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family|[NAD_binding_10] NADH(P)-binding"; CDD "RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide."; EC "(1,2)EC2.5.1.6(3,4)EC1.1.1.133"; KO "(1,2)K00789(3,4)K00067"; similar_genes "MAT2B_RAT(e-value:7.6e-24;bit-score:108.0)"; Scaffold010 rebuild exon 977964 978158 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; Scaffold010 rebuild exon 978246 978360 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; Scaffold010 rebuild exon 978446 978598 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; Scaffold010 rebuild exon 978707 978894 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; Scaffold010 rebuild exon 978997 979159 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; Scaffold010 rebuild exon 979241 979344 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.1"; Scaffold010 rebuild transcript 977964 979344 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; gene_name "(1,2)metK(3,4)rfbD"; annotation "(1,2)S-adenosylmethionine synthetase [EC:2.5.1.6](3,4)dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|(1,4)[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family|[NAD_binding_10] NADH(P)-binding"; CDD "RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide."; EC "(1,2)EC2.5.1.6(3,4)EC1.1.1.133"; KO "(1,2)K00789(3,4)K00067"; similar_genes "MAT2B_RAT(e-value:7.6e-24;bit-score:108.0)"; Scaffold010 rebuild exon 977964 978158 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; Scaffold010 rebuild exon 978246 978360 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; Scaffold010 rebuild exon 978446 978598 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; Scaffold010 rebuild exon 978707 978894 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; Scaffold010 rebuild exon 979006 979159 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; Scaffold010 rebuild exon 979241 979344 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.2"; Scaffold010 rebuild transcript 977964 979197 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.3"; gene_name "(1,2)metK(3,4)rfbD"; annotation "(1,2)S-adenosylmethionine synthetase [EC:2.5.1.6](3,4)dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|(1,4)[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family|[NAD_binding_10] NADH(P)-binding"; CDD "RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide."; EC "(1,2)EC2.5.1.6(3,4)EC1.1.1.133"; KO "(1,2)K00789(3,4)K00067"; similar_genes "MAT2B_RAT(e-value:7.6e-24;bit-score:108.0)"; Scaffold010 rebuild exon 977964 978158 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.3"; Scaffold010 rebuild exon 978246 978360 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.3"; Scaffold010 rebuild exon 978446 978598 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.3"; Scaffold010 rebuild exon 978707 978894 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.3"; Scaffold010 rebuild exon 979006 979197 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.3"; Scaffold010 rebuild transcript 977964 978987 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.4"; gene_name "(1,2)metK(3,4)rfbD"; annotation "(1,2)S-adenosylmethionine synthetase [EC:2.5.1.6](3,4)dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]"; Pfam "[NAD_binding_4] Male sterility protein|[Polysacc_synt_2] Polysaccharide biosynthesis protein|[Epimerase] NAD dependent epimerase/dehydratase family|[RmlD_sub_bind] RmlD substrate binding domain|(1,4)[3Beta_HSD] 3-beta hydroxysteroid dehydrogenase/isomerase family|[NAD_binding_10] NADH(P)-binding"; CDD "RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide."; EC "(1,2)EC2.5.1.6(3,4)EC1.1.1.133"; KO "(1,2)K00789(3,4)K00067"; similar_genes "MAT2B_RAT(e-value:7.6e-24;bit-score:108.0)"; Scaffold010 rebuild exon 977964 978158 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.4"; Scaffold010 rebuild exon 978246 978360 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.4"; Scaffold010 rebuild exon 978446 978598 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.4"; Scaffold010 rebuild exon 978707 978987 . + . gene_id "RvY_14413"; transcript_id "RvY_14413.4"; Scaffold010 rebuild transcript 979774 980073 . - . gene_id "RvY_14414"; transcript_id "RvY_14414.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 979774 980073 . - . gene_id "RvY_14414"; transcript_id "RvY_14414.1"; Scaffold010 rebuild transcript 981579 989411 . + . gene_id "RvY_14415"; transcript_id "RvY_14415.1"; gene_name "CCND2"; annotation "cyclin D2"; Pfam "[Cyclin_C] Cyclin, C-terminal domain|[Cyclin_N] Cyclin, N-terminal domain"; KO "K10151"; similar_genes "CCNA_SPISO(e-value:1.0e-06;bit-score:51.0)"; Scaffold010 rebuild exon 981579 981818 . + . gene_id "RvY_14415"; transcript_id "RvY_14415.1"; Scaffold010 rebuild exon 982031 982243 . + . gene_id "RvY_14415"; transcript_id "RvY_14415.1"; Scaffold010 rebuild exon 984240 984399 . + . gene_id "RvY_14415"; transcript_id "RvY_14415.1"; Scaffold010 rebuild exon 988710 988840 . + . gene_id "RvY_14415"; transcript_id "RvY_14415.1"; Scaffold010 rebuild exon 988998 989411 . + . gene_id "RvY_14415"; transcript_id "RvY_14415.1"; Scaffold010 rebuild transcript 990340 990769 . - . gene_id "RvY_14416"; transcript_id "RvY_14416.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 990340 990485 . - . gene_id "RvY_14416"; transcript_id "RvY_14416.1"; Scaffold010 rebuild exon 990760 990769 . - . gene_id "RvY_14416"; transcript_id "RvY_14416.1"; Scaffold010 rebuild transcript 990940 993145 . - . gene_id "RvY_14417"; transcript_id "RvY_14417.1"; gene_name "BRLZ"; annotation "hypothetical protein."; CDD "basic region leucin zipper."; Scaffold010 rebuild exon 990940 991409 . - . gene_id "RvY_14417"; transcript_id "RvY_14417.1"; Scaffold010 rebuild exon 991636 991867 . - . gene_id "RvY_14417"; transcript_id "RvY_14417.1"; Scaffold010 rebuild exon 991954 992335 . - . gene_id "RvY_14417"; transcript_id "RvY_14417.1"; Scaffold010 rebuild exon 992712 993145 . - . gene_id "RvY_14417"; transcript_id "RvY_14417.1"; Scaffold010 rebuild transcript 993944 994207 . - . gene_id "RvY_14418"; transcript_id "RvY_14418.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 993944 994207 . - . gene_id "RvY_14418"; transcript_id "RvY_14418.1"; Scaffold010 rebuild transcript 994995 995651 . + . gene_id "RvY_14419"; transcript_id "RvY_14419.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 994995 995651 . + . gene_id "RvY_14419"; transcript_id "RvY_14419.1"; Scaffold010 rebuild transcript 995942 996231 . + . gene_id "RvY_14420"; transcript_id "RvY_14420.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 995942 996080 . + . gene_id "RvY_14420"; transcript_id "RvY_14420.1"; Scaffold010 rebuild exon 996149 996231 . + . gene_id "RvY_14420"; transcript_id "RvY_14420.1"; Scaffold010 rebuild transcript 996765 998367 . - . gene_id "RvY_14421"; transcript_id "RvY_14421.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 996765 997297 . - . gene_id "RvY_14421"; transcript_id "RvY_14421.1"; Scaffold010 rebuild exon 998220 998367 . - . gene_id "RvY_14421"; transcript_id "RvY_14421.1"; Scaffold010 rebuild transcript 999273 1001596 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; gene_name "LAP3"; annotation "putative Probable cytosol aminopeptidase"; Pfam "[Peptidase_M17_N] Cytosol aminopeptidase family, N-terminal domain|[Peptidase_M17] Cytosol aminopeptidase family, catalytic domain"; CDD "leucyl aminopeptidase; Provisional"; EC "EC3.4.11.1|EC3.4.11.5"; KO "K11142"; similar_genes "AMPA_RICTY(e-value:1.0e-42;bit-score:171.0)"; Scaffold010 rebuild exon 999273 999401 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 999460 999596 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 999665 999728 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 999793 999898 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 999979 1000047 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 1000122 1000551 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 1000625 1000749 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 1000867 1001141 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 1001199 1001442 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild exon 1001508 1001596 . + . gene_id "RvY_14422"; transcript_id "RvY_14422.1"; Scaffold010 rebuild transcript 1001827 1003131 . - . gene_id "RvY_14423"; transcript_id "RvY_14423.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1001827 1002681 . - . gene_id "RvY_14423"; transcript_id "RvY_14423.1"; Scaffold010 rebuild exon 1002742 1002936 . - . gene_id "RvY_14423"; transcript_id "RvY_14423.1"; Scaffold010 rebuild exon 1003006 1003131 . - . gene_id "RvY_14423"; transcript_id "RvY_14423.1"; Scaffold010 rebuild transcript 1003619 1004691 . + . gene_id "RvY_14424"; transcript_id "RvY_14424.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1003619 1003996 . + . gene_id "RvY_14424"; transcript_id "RvY_14424.1"; Scaffold010 rebuild exon 1004095 1004164 . + . gene_id "RvY_14424"; transcript_id "RvY_14424.1"; Scaffold010 rebuild exon 1004304 1004359 . + . gene_id "RvY_14424"; transcript_id "RvY_14424.1"; Scaffold010 rebuild exon 1004437 1004584 . + . gene_id "RvY_14424"; transcript_id "RvY_14424.1"; Scaffold010 rebuild exon 1004654 1004691 . + . gene_id "RvY_14424"; transcript_id "RvY_14424.1"; Scaffold010 rebuild transcript 1005007 1007074 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.1"; annotation "hypothetical protein."; Pfam "[zf-HC5HC2H] PHD-like zinc-binding domain"; Scaffold010 rebuild exon 1005007 1005167 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.1"; Scaffold010 rebuild exon 1005446 1005542 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.1"; Scaffold010 rebuild exon 1005618 1006409 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.1"; Scaffold010 rebuild exon 1006733 1007074 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.1"; Scaffold010 rebuild transcript 1004903 1007074 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.2"; annotation "hypothetical protein."; Pfam "[zf-HC5HC2H] PHD-like zinc-binding domain"; Scaffold010 rebuild exon 1004903 1004992 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.2"; Scaffold010 rebuild exon 1005118 1005167 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.2"; Scaffold010 rebuild exon 1005446 1005542 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.2"; Scaffold010 rebuild exon 1005618 1006409 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.2"; Scaffold010 rebuild exon 1006733 1007074 . - . gene_id "RvY_14425"; transcript_id "RvY_14425.2"; Scaffold010 rebuild transcript 1008409 1008974 . - . gene_id "RvY_14426"; transcript_id "RvY_14426.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1008409 1008551 . - . gene_id "RvY_14426"; transcript_id "RvY_14426.1"; Scaffold010 rebuild exon 1008624 1008689 . - . gene_id "RvY_14426"; transcript_id "RvY_14426.1"; Scaffold010 rebuild exon 1008785 1008974 . - . gene_id "RvY_14426"; transcript_id "RvY_14426.1"; Scaffold010 rebuild transcript 1009860 1011962 . + . gene_id "RvY_14427"; transcript_id "RvY_14427.1"; annotation "hypothetical protein."; Pfam "[VPS9] Vacuolar sorting protein 9 (VPS9) domain|[zf-A20] A20-like zinc finger"; similar_genes "RABX5_MOUSE(e-value:3.8e-23;bit-score:106.0)"; Scaffold010 rebuild exon 1009860 1010238 . + . gene_id "RvY_14427"; transcript_id "RvY_14427.1"; Scaffold010 rebuild exon 1010430 1010684 . + . gene_id "RvY_14427"; transcript_id "RvY_14427.1"; Scaffold010 rebuild exon 1010764 1010991 . + . gene_id "RvY_14427"; transcript_id "RvY_14427.1"; Scaffold010 rebuild exon 1011242 1011687 . + . gene_id "RvY_14427"; transcript_id "RvY_14427.1"; Scaffold010 rebuild exon 1011753 1011962 . + . gene_id "RvY_14427"; transcript_id "RvY_14427.1"; Scaffold010 rebuild transcript 1013966 1016811 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; gene_name "APC8"; annotation "anaphase-promoting complex subunit 8"; Pfam "[TPR_16] Tetratricopeptide repeat|[TPR_2] Tetratricopeptide repeat|[TPR_12] Tetratricopeptide repeat|[TPR_1] Tetratricopeptide repeat|[TPR_15] Tetratricopeptide repeat|[TPR_7] Tetratricopeptide repeat|[TPR_14] Tetratricopeptide repeat|[TPR_11] TPR repeat|[TPR_8] Tetratricopeptide repeat|[TPR_17] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; KO "K03355"; similar_genes "APC8_SCHPO(e-value:5.4e-14;bit-score:76.0)"; Scaffold010 rebuild exon 1013966 1014401 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1014459 1014593 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1014810 1014918 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1014986 1015150 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1015216 1015395 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1015483 1015663 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1015748 1015880 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1015946 1016054 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1016121 1016310 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1016408 1016630 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild exon 1016687 1016811 . - . gene_id "RvY_14428"; transcript_id "RvY_14428.1"; Scaffold010 rebuild transcript 1017721 1019610 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; gene_name "2A0119"; annotation "(1,2)Synaptic vesicle 2-related protein(3)putative Synaptic vesicle 2-related protein"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; similar_genes "(1,2)SVOP_RAT(e-value:1.9e-86;bit-score:316.0)(3)SVOP_MOUSE(e-value:2.2e-40;bit-score:163.0)"; Scaffold010 rebuild exon 1017721 1017809 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1017908 1018050 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1018112 1018170 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1018255 1018380 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1018472 1018668 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1018826 1019233 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1019311 1019479 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild exon 1019554 1019610 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.1"; Scaffold010 rebuild transcript 1017721 1019485 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; gene_name "2A0119"; annotation "(1,2)Synaptic vesicle 2-related protein(3)putative Synaptic vesicle 2-related protein"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; similar_genes "(1,2)SVOP_RAT(e-value:1.9e-86;bit-score:316.0)(3)SVOP_MOUSE(e-value:2.2e-40;bit-score:163.0)"; Scaffold010 rebuild exon 1017721 1017809 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild exon 1017908 1018050 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild exon 1018112 1018170 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild exon 1018255 1018380 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild exon 1018472 1018668 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild exon 1018826 1019233 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild exon 1019311 1019485 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.2"; Scaffold010 rebuild transcript 1019199 1020298 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.3"; gene_name "2A0119"; annotation "(1,2)Synaptic vesicle 2-related protein(3)putative Synaptic vesicle 2-related protein"; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "cation transport protein."; similar_genes "(1,2)SVOP_RAT(e-value:1.9e-86;bit-score:316.0)(3)SVOP_MOUSE(e-value:2.2e-40;bit-score:163.0)"; Scaffold010 rebuild exon 1019199 1019233 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.3"; Scaffold010 rebuild exon 1019311 1019479 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.3"; Scaffold010 rebuild exon 1019554 1019569 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.3"; Scaffold010 rebuild exon 1019639 1020036 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.3"; Scaffold010 rebuild exon 1020278 1020298 . + . gene_id "RvY_14429"; transcript_id "RvY_14429.3"; Scaffold010 rebuild transcript 1023123 1026452 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; gene_name "TBX1"; annotation "T-box transcription factor TBX1-A"; Pfam "[T-box]"; CDD "T-box. The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations."; KO "K10175"; similar_genes "TBX1A_XENLA(e-value:5.4e-67;bit-score:252.0)"; Scaffold010 rebuild exon 1023123 1023261 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1023671 1023981 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1024255 1024413 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1024530 1024652 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1025178 1025330 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1025396 1025435 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1025558 1025585 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1025672 1025835 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild exon 1026085 1026452 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.1"; Scaffold010 rebuild transcript 1023123 1026452 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; gene_name "TBX1"; annotation "T-box transcription factor TBX1-A"; Pfam "[T-box]"; CDD "T-box. The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations."; KO "K10175"; similar_genes "TBX1A_XENLA(e-value:5.4e-67;bit-score:252.0)"; Scaffold010 rebuild exon 1023123 1023261 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1023671 1023981 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1024255 1024413 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1024530 1024652 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1025178 1025330 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1025396 1025435 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1025558 1025585 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1025675 1025835 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild exon 1026085 1026452 . + . gene_id "RvY_14430"; transcript_id "RvY_14430.2"; Scaffold010 rebuild transcript 1026819 1027523 . - . gene_id "RvY_14431"; transcript_id "RvY_14431.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1026819 1026937 . - . gene_id "RvY_14431"; transcript_id "RvY_14431.1"; Scaffold010 rebuild exon 1027008 1027437 . - . gene_id "RvY_14431"; transcript_id "RvY_14431.1"; Scaffold010 rebuild exon 1027509 1027523 . - . gene_id "RvY_14431"; transcript_id "RvY_14431.1"; Scaffold010 rebuild transcript 1028272 1028442 . + . gene_id "RvY_14432"; transcript_id "RvY_14432.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1028272 1028442 . + . gene_id "RvY_14432"; transcript_id "RvY_14432.1"; Scaffold010 rebuild transcript 1028476 1029235 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.1"; annotation "hypothetical protein."; Pfam "[DUF2781]"; Scaffold010 rebuild exon 1028476 1028595 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.1"; Scaffold010 rebuild exon 1028677 1028821 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.1"; Scaffold010 rebuild exon 1028955 1029235 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.1"; Scaffold010 rebuild transcript 1028689 1029235 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.2"; annotation "hypothetical protein."; Pfam "[DUF2781]"; Scaffold010 rebuild exon 1028689 1028821 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.2"; Scaffold010 rebuild exon 1028952 1029235 . + . gene_id "RvY_14433"; transcript_id "RvY_14433.2"; Scaffold010 rebuild transcript 1030340 1030945 . + . gene_id "RvY_14434"; transcript_id "RvY_14434.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1030340 1030945 . + . gene_id "RvY_14434"; transcript_id "RvY_14434.1"; Scaffold010 rebuild transcript 1033477 1034170 . + . gene_id "RvY_14435"; transcript_id "RvY_14435.1"; annotation "hypothetical protein."; Pfam "[DUF2781]"; Scaffold010 rebuild exon 1033477 1033596 . + . gene_id "RvY_14435"; transcript_id "RvY_14435.1"; Scaffold010 rebuild exon 1033676 1034170 . + . gene_id "RvY_14435"; transcript_id "RvY_14435.1"; Scaffold010 rebuild transcript 1034463 1035180 . + . gene_id "RvY_14436"; transcript_id "RvY_14436.1"; annotation "hypothetical protein."; Pfam "[DUF2781]"; Scaffold010 rebuild exon 1034463 1034585 . + . gene_id "RvY_14436"; transcript_id "RvY_14436.1"; Scaffold010 rebuild exon 1034648 1034792 . + . gene_id "RvY_14436"; transcript_id "RvY_14436.1"; Scaffold010 rebuild exon 1034900 1035180 . + . gene_id "RvY_14436"; transcript_id "RvY_14436.1"; Scaffold010 rebuild transcript 1035640 1036552 . + . gene_id "RvY_14437"; transcript_id "RvY_14437.1"; annotation "hypothetical protein."; Pfam "[DUF2781]"; Scaffold010 rebuild exon 1035640 1035900 . + . gene_id "RvY_14437"; transcript_id "RvY_14437.1"; Scaffold010 rebuild exon 1035960 1036104 . + . gene_id "RvY_14437"; transcript_id "RvY_14437.1"; Scaffold010 rebuild exon 1036263 1036552 . + . gene_id "RvY_14437"; transcript_id "RvY_14437.1"; Scaffold010 rebuild transcript 1036838 1038515 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; annotation "putative BTB/POZ domain-containing protein KCTD10"; Pfam "[K_tetra] K+ channel tetramerisation domain"; KO "K15074"; similar_genes "KCD10_MOUSE(e-value:6.0e-28;bit-score:122.0)"; Scaffold010 rebuild exon 1036838 1037273 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; Scaffold010 rebuild exon 1037351 1037517 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; Scaffold010 rebuild exon 1037589 1037725 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; Scaffold010 rebuild exon 1037810 1037908 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; Scaffold010 rebuild exon 1037974 1038235 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; Scaffold010 rebuild exon 1038495 1038515 . - . gene_id "RvY_14438"; transcript_id "RvY_14438.1"; Scaffold010 rebuild transcript 1038546 1040208 . + . gene_id "RvY_14439"; transcript_id "RvY_14439.1"; annotation "putative Cytohesin-1"; Pfam "[PH]|[Sec7]"; similar_genes "CYH1_RAT(e-value:1.5e-26;bit-score:117.0)"; Scaffold010 rebuild exon 1038546 1038986 . + . gene_id "RvY_14439"; transcript_id "RvY_14439.1"; Scaffold010 rebuild exon 1039118 1039483 . + . gene_id "RvY_14439"; transcript_id "RvY_14439.1"; Scaffold010 rebuild exon 1039738 1040208 . + . gene_id "RvY_14439"; transcript_id "RvY_14439.1"; Scaffold010 rebuild transcript 1040546 1043677 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family"; Scaffold010 rebuild exon 1040546 1040650 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1040723 1040901 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1040962 1041026 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1041087 1041259 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1041314 1041464 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1041533 1041725 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1041803 1041877 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1041966 1042055 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1042148 1042259 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1042327 1042442 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1042534 1042581 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1042665 1043127 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1043232 1043287 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild exon 1043407 1043677 . - . gene_id "RvY_14440"; transcript_id "RvY_14440.1"; Scaffold010 rebuild transcript 1040979 1041161 . + . gene_id "RvY_14441"; transcript_id "RvY_14441.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1040979 1041161 . + . gene_id "RvY_14441"; transcript_id "RvY_14441.1"; Scaffold010 rebuild transcript 1044462 1048266 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; gene_name "SET"; annotation "PR domain zinc finger protein 14"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[SET]|[zf-C2H2_jaz] Zinc-finger double-stranded RNA-binding|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_6] C2H2-type zinc finger|[zf-C2H2_4] C2H2-type zinc finger"; CDD "SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues"; similar_genes "PRD14_HUMAN(e-value:4.2e-69;bit-score:259.0)"; Scaffold010 rebuild exon 1044462 1044626 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1044966 1045080 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1045340 1045462 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1045724 1045868 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1045941 1046238 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1046353 1046513 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1046607 1046702 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1047753 1048027 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild exon 1048244 1048266 . - . gene_id "RvY_14442"; transcript_id "RvY_14442.1"; Scaffold010 rebuild transcript 1047885 1048064 . + . gene_id "RvY_14443"; transcript_id "RvY_14443.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1047885 1048064 . + . gene_id "RvY_14443"; transcript_id "RvY_14443.1"; Scaffold010 rebuild transcript 1049661 1050869 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.1"; gene_name "LIPT1"; annotation "lipoyltransferase 1 [EC:6.-.-.-]"; Pfam "[BPL_LplA_LipB] Biotin/lipoate A/B protein ligase family"; CDD "lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus."; EC "EC2.3.1.-|EC6.-.-.-"; KO "K10105"; similar_genes "LIPT_HUMAN(e-value:1.1e-20;bit-score:98.0)"; Scaffold010 rebuild exon 1049661 1050197 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.1"; Scaffold010 rebuild exon 1050275 1050369 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.1"; Scaffold010 rebuild exon 1050455 1050869 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.1"; Scaffold010 rebuild transcript 1049213 1050869 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.2"; gene_name "LIPT1"; annotation "lipoyltransferase 1 [EC:6.-.-.-]"; Pfam "[BPL_LplA_LipB] Biotin/lipoate A/B protein ligase family"; CDD "lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus."; EC "EC2.3.1.-|EC6.-.-.-"; KO "K10105"; similar_genes "LIPT_HUMAN(e-value:1.1e-20;bit-score:98.0)"; Scaffold010 rebuild exon 1049213 1049238 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.2"; Scaffold010 rebuild exon 1049903 1050197 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.2"; Scaffold010 rebuild exon 1050275 1050369 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.2"; Scaffold010 rebuild exon 1050455 1050869 . - . gene_id "RvY_14444"; transcript_id "RvY_14444.2"; Scaffold010 rebuild transcript 1051208 1052002 . - . gene_id "RvY_14445"; transcript_id "RvY_14445.1"; annotation "hypothetical protein."; Pfam "[DUF837]"; Scaffold010 rebuild exon 1051208 1052002 . - . gene_id "RvY_14445"; transcript_id "RvY_14445.1"; Scaffold010 rebuild transcript 1054243 1054541 . + . gene_id "RvY_14446"; transcript_id "RvY_14446.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1054243 1054330 . + . gene_id "RvY_14446"; transcript_id "RvY_14446.1"; Scaffold010 rebuild exon 1054450 1054541 . + . gene_id "RvY_14446"; transcript_id "RvY_14446.1"; Scaffold010 rebuild transcript 1055384 1059010 . + . gene_id "RvY_14447"; transcript_id "RvY_14447.1"; gene_name "ANK"; annotation "hypothetical protein."; Pfam "[Ank_4] Ankyrin repeats (many copies)|[Ank_2] Ankyrin repeats (3 copies)|[Ank_3] Ankyrin repeat|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; CDD "ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats."; similar_genes "PP16B_MOUSE(e-value:4.7e-15;bit-score:79.0)"; Scaffold010 rebuild exon 1055384 1055920 . + . gene_id "RvY_14447"; transcript_id "RvY_14447.1"; Scaffold010 rebuild exon 1056374 1056677 . + . gene_id "RvY_14447"; transcript_id "RvY_14447.1"; Scaffold010 rebuild exon 1056979 1057307 . + . gene_id "RvY_14447"; transcript_id "RvY_14447.1"; Scaffold010 rebuild exon 1057633 1057928 . + . gene_id "RvY_14447"; transcript_id "RvY_14447.1"; Scaffold010 rebuild exon 1058176 1059010 . + . gene_id "RvY_14447"; transcript_id "RvY_14447.1"; Scaffold010 framed transcript 1059586 1060898 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; annotation "hypothetical protein."; Scaffold010 framed exon 1059586 1059760 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 framed exon 1059833 1059963 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 framed exon 1060028 1060112 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 framed exon 1060189 1060324 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 framed exon 1060410 1060559 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 framed exon 1060632 1060767 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 framed exon 1060896 1060898 . - . gene_id "RvY_14449"; transcript_id "RvY_14449.1"; Scaffold010 rebuild transcript 1061240 1061560 . - . gene_id "RvY_14450"; transcript_id "RvY_14450.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1061240 1061560 . - . gene_id "RvY_14450"; transcript_id "RvY_14450.1"; Scaffold010 rebuild transcript 1061910 1065111 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; annotation "hypothetical protein."; Pfam "[MAP65_ASE1] Microtubule associated protein (MAP65/ASE1 family)"; Scaffold010 rebuild exon 1061910 1061927 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1062085 1062170 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1062254 1062527 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1062712 1062945 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1063039 1063200 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1063279 1063422 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1063941 1064091 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1064176 1064312 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1064389 1064484 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1064711 1064965 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild exon 1065034 1065111 . + . gene_id "RvY_14451"; transcript_id "RvY_14451.1"; Scaffold010 rebuild transcript 1069600 1087664 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; annotation "hypothetical protein."; Pfam "[EGF_3] EGF domain|[cEGF] Complement Clr-like EGF-like|[EGF_CA] Calcium-binding EGF domain|[EGF] EGF-like domain"; similar_genes "FBN2_MOUSE(e-value:2.2e-21;bit-score:100.0)"; Scaffold010 rebuild exon 1069600 1069689 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1070086 1070341 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1070467 1070571 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1070784 1070900 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1070977 1071108 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1071188 1071313 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1071380 1071547 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1071632 1071754 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1071833 1072186 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1072258 1072389 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1072463 1072594 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1072694 1072858 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1072933 1073205 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1073279 1073422 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1073483 1073839 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1074077 1074427 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1074657 1075040 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1075350 1076078 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1076255 1076497 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1076567 1076784 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1076961 1077954 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1078121 1078624 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1079258 1079576 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1079862 1080343 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1080584 1081138 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1081274 1081726 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1081921 1082523 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1082859 1083287 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1083347 1083963 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1084148 1084610 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1084905 1085618 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1085814 1086415 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1086508 1086863 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1086930 1087080 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1087145 1087313 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild exon 1087378 1087664 . + . gene_id "RvY_14452"; transcript_id "RvY_14452.1"; Scaffold010 rebuild transcript 1089543 1091629 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; Scaffold010 rebuild exon 1089543 1089709 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; Scaffold010 rebuild exon 1089817 1090125 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; Scaffold010 rebuild exon 1090189 1090381 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; Scaffold010 rebuild exon 1090466 1090711 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; Scaffold010 rebuild exon 1090791 1091414 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; Scaffold010 rebuild exon 1091498 1091629 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.1"; Scaffold010 rebuild transcript 1089809 1091399 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.2"; gene_name "M14_CP_A-B_like"; annotation "hypothetical protein."; Pfam "[Peptidase_M14] Zinc carboxypeptidase"; CDD "The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the pancreas. The A forms have slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 preferring the bulkier aromatic side chains. CPA3 is found in secretory granules of mast cells and functions in inflammatory processes. CPA4 is detected in hormone-regulated tissues, and is thought to play a role in prostate cancer. CPA5 is present in discrete regions of pituitary and other tissues, and cleaves aliphatic C-terminal residues. CPA6 is highly expressed in embryonic brain and optic muscle, suggesting that it may play a specific role in cell migration and axonal guidance. CPU (also called CPB2) is produced and secreted by the liver as the inactive precursor, PCPU, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). Little is known about CPO but it has been suggested to have specificity for acidic residues."; Scaffold010 rebuild exon 1089809 1090125 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.2"; Scaffold010 rebuild exon 1090189 1090381 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.2"; Scaffold010 rebuild exon 1090466 1090711 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.2"; Scaffold010 rebuild exon 1090791 1091399 . - . gene_id "RvY_14453"; transcript_id "RvY_14453.2"; Scaffold010 rebuild transcript 1091834 1092449 . - . gene_id "RvY_14454"; transcript_id "RvY_14454.1"; gene_name "K07575"; annotation "putative Malignant T cell-amplified sequence 1"; Pfam "[PUA]"; CDD "Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]"; KO "K07575"; similar_genes "MCTS1_DANRE(e-value:1.0e-42;bit-score:171.0)"; Scaffold010 rebuild exon 1091834 1092277 . - . gene_id "RvY_14454"; transcript_id "RvY_14454.1"; Scaffold010 rebuild exon 1092345 1092449 . - . gene_id "RvY_14454"; transcript_id "RvY_14454.1"; Scaffold010 rebuild transcript 1095353 1097596 . - . gene_id "RvY_14455"; transcript_id "RvY_14455.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1095353 1095835 . - . gene_id "RvY_14455"; transcript_id "RvY_14455.1"; Scaffold010 rebuild exon 1097159 1097596 . - . gene_id "RvY_14455"; transcript_id "RvY_14455.1"; Scaffold010 rebuild transcript 1097836 1098006 . - . gene_id "RvY_14456"; transcript_id "RvY_14456.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1097836 1098006 . - . gene_id "RvY_14456"; transcript_id "RvY_14456.1"; Scaffold010 rebuild transcript 1098528 1099196 . + . gene_id "RvY_14457"; transcript_id "RvY_14457.1"; annotation "hypothetical protein."; Pfam "[Morph_protein1] Defects in morphology protein 1, mitochondrial precursor"; Scaffold010 rebuild exon 1098528 1099196 . + . gene_id "RvY_14457"; transcript_id "RvY_14457.1"; Scaffold010 rebuild transcript 1099221 1099472 . + . gene_id "RvY_14458"; transcript_id "RvY_14458.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1099221 1099472 . + . gene_id "RvY_14458"; transcript_id "RvY_14458.1"; Scaffold010 rebuild transcript 1100504 1101462 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 1100504 1100591 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.1"; Scaffold010 rebuild exon 1100690 1100871 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.1"; Scaffold010 rebuild exon 1100933 1101239 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.1"; Scaffold010 rebuild exon 1101347 1101462 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.1"; Scaffold010 rebuild transcript 1099891 1100494 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.2"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 1099891 1100346 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.2"; Scaffold010 rebuild exon 1100423 1100494 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.2"; Scaffold010 rebuild transcript 1100819 1101462 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.3"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 1100819 1100878 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.3"; Scaffold010 rebuild exon 1100933 1101239 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.3"; Scaffold010 rebuild exon 1101347 1101462 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.3"; Scaffold010 rebuild transcript 1100150 1100591 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.4"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain"; Scaffold010 rebuild exon 1100150 1100346 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.4"; Scaffold010 rebuild exon 1100423 1100591 . - . gene_id "RvY_14459"; transcript_id "RvY_14459.4"; Scaffold010 rebuild transcript 1101918 1103436 . + . gene_id "RvY_14460"; transcript_id "RvY_14460.1"; annotation "hypothetical protein."; Pfam "[LRR_6] Leucine Rich repeat"; similar_genes "AT5SL_MACFA(e-value:1.5e-07;bit-score:54.0)"; Scaffold010 rebuild exon 1101918 1102447 . + . gene_id "RvY_14460"; transcript_id "RvY_14460.1"; Scaffold010 rebuild exon 1102549 1102769 . + . gene_id "RvY_14460"; transcript_id "RvY_14460.1"; Scaffold010 rebuild exon 1102836 1102998 . + . gene_id "RvY_14460"; transcript_id "RvY_14460.1"; Scaffold010 rebuild exon 1103082 1103436 . + . gene_id "RvY_14460"; transcript_id "RvY_14460.1"; Scaffold010 rebuild transcript 1103589 1103955 . - . gene_id "RvY_14461"; transcript_id "RvY_14461.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1103589 1103752 . - . gene_id "RvY_14461"; transcript_id "RvY_14461.1"; Scaffold010 rebuild exon 1103844 1103955 . - . gene_id "RvY_14461"; transcript_id "RvY_14461.1"; Scaffold010 rebuild transcript 1104086 1104436 . - . gene_id "RvY_14462"; transcript_id "RvY_14462.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1104086 1104436 . - . gene_id "RvY_14462"; transcript_id "RvY_14462.1"; Scaffold010 rebuild transcript 1105688 1107301 . - . gene_id "RvY_14463"; transcript_id "RvY_14463.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1105688 1105868 . - . gene_id "RvY_14463"; transcript_id "RvY_14463.1"; Scaffold010 rebuild exon 1107186 1107301 . - . gene_id "RvY_14463"; transcript_id "RvY_14463.1"; Scaffold010 rebuild transcript 1107781 1113572 . + . gene_id "RvY_14464"; transcript_id "RvY_14464.1"; gene_name "OSR"; annotation "putative Zinc finger protein odd-1"; Pfam "[zf-C2H2] Zinc finger, C2H2 type|[zf-H2C2_2] Zinc-finger double domain|[zf-C2H2_4] C2H2-type zinc finger"; KO "K09215"; similar_genes "ODD1_CAEEL(e-value:5.7e-39;bit-score:159.0)"; Scaffold010 rebuild exon 1107781 1107829 . + . gene_id "RvY_14464"; transcript_id "RvY_14464.1"; Scaffold010 rebuild exon 1112500 1113144 . + . gene_id "RvY_14464"; transcript_id "RvY_14464.1"; Scaffold010 rebuild exon 1113235 1113291 . + . gene_id "RvY_14464"; transcript_id "RvY_14464.1"; Scaffold010 rebuild exon 1113418 1113572 . + . gene_id "RvY_14464"; transcript_id "RvY_14464.1"; Scaffold010 rebuild transcript 1115267 1115824 . - . gene_id "RvY_14465"; transcript_id "RvY_14465.1"; annotation "hypothetical protein."; Pfam "[SAP18] Sin3 associated polypeptide p18 (SAP18)"; KO "K14324"; Scaffold010 rebuild exon 1115267 1115824 . - . gene_id "RvY_14465"; transcript_id "RvY_14465.1"; Scaffold010 rebuild transcript 1116928 1118149 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; gene_name "(1)Phd_like_VIAF"; annotation "(1)putative Phosducin-like protein 3(2)hypothetical protein."; Pfam "[Phosducin]"; CDD "(1)Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain."; similar_genes "(1)PDCL3_PONAB(e-value:7.7e-43;bit-score:171.0)"; Scaffold010 rebuild exon 1116928 1116933 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; Scaffold010 rebuild exon 1117059 1117179 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; Scaffold010 rebuild exon 1117284 1117368 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; Scaffold010 rebuild exon 1117464 1117607 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; Scaffold010 rebuild exon 1117701 1117909 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; Scaffold010 rebuild exon 1118016 1118149 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.1"; Scaffold010 rebuild transcript 1118023 1118409 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.2"; gene_name "(1)Phd_like_VIAF"; annotation "(1)putative Phosducin-like protein 3(2)hypothetical protein."; Pfam "[Phosducin]"; CDD "(1)Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain."; similar_genes "(1)PDCL3_PONAB(e-value:7.7e-43;bit-score:171.0)"; Scaffold010 rebuild exon 1118023 1118409 . + . gene_id "RvY_14466"; transcript_id "RvY_14466.2"; Scaffold010 rebuild transcript 1119663 1127762 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1119663 1120336 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1120539 1121061 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1121115 1121659 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1121726 1121763 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1121992 1122492 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1122722 1123142 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1123321 1123945 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1124166 1124609 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1124890 1125301 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1125555 1125899 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1126146 1126592 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1126841 1127358 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild exon 1127580 1127762 . + . gene_id "RvY_14467"; transcript_id "RvY_14467.1"; Scaffold010 rebuild transcript 1128940 1130142 . - . gene_id "RvY_14468"; transcript_id "RvY_14468.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1128940 1129552 . - . gene_id "RvY_14468"; transcript_id "RvY_14468.1"; Scaffold010 rebuild exon 1129792 1129861 . - . gene_id "RvY_14468"; transcript_id "RvY_14468.1"; Scaffold010 rebuild exon 1129983 1130142 . - . gene_id "RvY_14468"; transcript_id "RvY_14468.1"; Scaffold010 rebuild transcript 1131346 1133072 . + . gene_id "RvY_14469"; transcript_id "RvY_14469.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1131346 1131380 . + . gene_id "RvY_14469"; transcript_id "RvY_14469.1"; Scaffold010 rebuild exon 1132904 1133072 . + . gene_id "RvY_14469"; transcript_id "RvY_14469.1"; Scaffold010 rebuild transcript 1133288 1135382 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; gene_name "LA"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[La]|[RRM_3] RNA binding motif|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "Domain in the RNA-binding Lupus La protein; unknown function."; KO "K15191"; similar_genes "LA_DROME(e-value:5.9e-09;bit-score:59.0)"; Scaffold010 rebuild exon 1133288 1133368 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1133479 1133557 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1133647 1133747 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1133856 1133936 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1134006 1134176 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1134259 1134573 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1134643 1135242 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild exon 1135317 1135382 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.1"; Scaffold010 rebuild transcript 1133288 1135382 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; gene_name "LA"; annotation "hypothetical protein."; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[La]|[RRM_3] RNA binding motif|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "Domain in the RNA-binding Lupus La protein; unknown function."; KO "K15191"; similar_genes "LA_DROME(e-value:5.9e-09;bit-score:59.0)"; Scaffold010 rebuild exon 1133288 1133368 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1133479 1133557 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1133647 1133747 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1133856 1133936 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1134006 1134176 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1134259 1134573 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1134643 1135212 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild exon 1135317 1135382 . + . gene_id "RvY_14470"; transcript_id "RvY_14470.2"; Scaffold010 rebuild transcript 1135829 1136167 . - . gene_id "RvY_14471"; transcript_id "RvY_14471.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_L36] Ribosomal protein L36"; Scaffold010 rebuild exon 1135829 1136167 . - . gene_id "RvY_14471"; transcript_id "RvY_14471.1"; Scaffold010 rebuild transcript 1136647 1137724 . - . gene_id "RvY_14472"; transcript_id "RvY_14472.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold010 rebuild exon 1136647 1137174 . - . gene_id "RvY_14472"; transcript_id "RvY_14472.1"; Scaffold010 rebuild exon 1137254 1137724 . - . gene_id "RvY_14472"; transcript_id "RvY_14472.1"; Scaffold010 rebuild transcript 1139426 1139806 . - . gene_id "RvY_14473"; transcript_id "RvY_14473.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1139426 1139806 . - . gene_id "RvY_14473"; transcript_id "RvY_14473.1"; Scaffold010 rebuild transcript 1140978 1141175 . + . gene_id "RvY_14474"; transcript_id "RvY_14474.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1140978 1141175 . + . gene_id "RvY_14474"; transcript_id "RvY_14474.1"; Scaffold010 rebuild transcript 1141688 1142026 . - . gene_id "RvY_14475"; transcript_id "RvY_14475.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1141688 1142026 . - . gene_id "RvY_14475"; transcript_id "RvY_14475.1"; Scaffold010 rebuild transcript 1141627 1141959 . - . gene_id "RvY_14475"; transcript_id "RvY_14475.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1141627 1141959 . - . gene_id "RvY_14475"; transcript_id "RvY_14475.2"; Scaffold010 rebuild transcript 1145020 1145358 . - . gene_id "RvY_14476"; transcript_id "RvY_14476.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_L36] Ribosomal protein L36"; Scaffold010 rebuild exon 1145020 1145358 . - . gene_id "RvY_14476"; transcript_id "RvY_14476.1"; Scaffold010 rebuild transcript 1145794 1146141 . + . gene_id "RvY_14477"; transcript_id "RvY_14477.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1145794 1146141 . + . gene_id "RvY_14477"; transcript_id "RvY_14477.1"; Scaffold010 rebuild transcript 1145732 1146141 . + . gene_id "RvY_14477"; transcript_id "RvY_14477.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1145732 1145764 . + . gene_id "RvY_14477"; transcript_id "RvY_14477.2"; Scaffold010 rebuild exon 1145905 1146141 . + . gene_id "RvY_14477"; transcript_id "RvY_14477.2"; Scaffold010 rebuild transcript 1147343 1148413 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold010 rebuild exon 1147343 1148413 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.1"; Scaffold010 rebuild transcript 1147551 1148413 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.2"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold010 rebuild exon 1147551 1147691 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.2"; Scaffold010 rebuild exon 1147754 1148413 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.2"; Scaffold010 rebuild transcript 1147343 1148040 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.3"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold010 rebuild exon 1147343 1147899 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.3"; Scaffold010 rebuild exon 1148010 1148040 . - . gene_id "RvY_14478"; transcript_id "RvY_14478.3"; Scaffold010 rebuild transcript 1148954 1149614 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1148954 1148980 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.1"; Scaffold010 rebuild exon 1149060 1149222 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.1"; Scaffold010 rebuild exon 1149292 1149614 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.1"; Scaffold010 rebuild transcript 1148954 1149579 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1148954 1148980 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.2"; Scaffold010 rebuild exon 1149060 1149222 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.2"; Scaffold010 rebuild exon 1149292 1149452 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.2"; Scaffold010 rebuild exon 1149532 1149579 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.2"; Scaffold010 rebuild transcript 1148106 1148957 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.3"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1148106 1148239 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.3"; Scaffold010 rebuild exon 1148729 1148957 . + . gene_id "RvY_14479"; transcript_id "RvY_14479.3"; Scaffold010 rebuild transcript 1150120 1151497 . - . gene_id "RvY_14480"; transcript_id "RvY_14480.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1150120 1150246 . - . gene_id "RvY_14480"; transcript_id "RvY_14480.1"; Scaffold010 rebuild exon 1150327 1150644 . - . gene_id "RvY_14480"; transcript_id "RvY_14480.1"; Scaffold010 rebuild exon 1150819 1151289 . - . gene_id "RvY_14480"; transcript_id "RvY_14480.1"; Scaffold010 rebuild exon 1151364 1151497 . - . gene_id "RvY_14480"; transcript_id "RvY_14480.1"; Scaffold010 rebuild transcript 1152051 1155301 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; gene_name "hutU"; annotation "Urocanate hydratase"; Pfam "[Urocanase]"; CDD "urocanate hydratase; Provisional"; EC "EC4.2.1.49"; KO "K01712"; similar_genes "HUTU_HUMAN(e-value:3.8e-125;bit-score:445.0)"; Scaffold010 rebuild exon 1152051 1152173 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1152244 1152356 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1152430 1152768 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1152824 1152945 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1153032 1153270 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1153365 1153473 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1153575 1153637 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1153722 1153810 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1153888 1154031 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1154103 1154153 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1154267 1154344 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1154431 1154604 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1154668 1154776 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1154897 1155027 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild exon 1155173 1155301 . - . gene_id "RvY_14481"; transcript_id "RvY_14481.1"; Scaffold010 rebuild transcript 1156473 1161538 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; gene_name "SMC2"; annotation "putative Structural maintenance of chromosomes protein 2"; Pfam "[SMC_hinge] SMC proteins Flexible Hinge Domain|[SMC_N] RecF/RecN/SMC N terminal domain|[AAA_23] AAA domain|[AAA_21] AAA domain"; KO "K06674"; similar_genes "SMC2_XENLA(e-value:1.2e-34;bit-score:144.0)"; Scaffold010 rebuild exon 1156473 1156566 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1156635 1157028 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1157090 1157333 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1157438 1157816 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1158063 1158610 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1158826 1159072 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1159225 1159486 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1159568 1159692 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1159765 1160146 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1160210 1160357 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1160419 1160628 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1160693 1160818 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1160891 1161072 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1161147 1161294 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild exon 1161374 1161538 . + . gene_id "RvY_14482"; transcript_id "RvY_14482.1"; Scaffold010 rebuild transcript 1162866 1163138 . + . gene_id "RvY_14483"; transcript_id "RvY_14483.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1162866 1163138 . + . gene_id "RvY_14483"; transcript_id "RvY_14483.1"; Scaffold010 rebuild transcript 1166640 1167058 . + . gene_id "RvY_14484"; transcript_id "RvY_14484.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1166640 1166850 . + . gene_id "RvY_14484"; transcript_id "RvY_14484.1"; Scaffold010 rebuild exon 1166970 1167058 . + . gene_id "RvY_14484"; transcript_id "RvY_14484.1"; Scaffold010 rebuild transcript 1167083 1168015 . + . gene_id "RvY_14485"; transcript_id "RvY_14485.1"; gene_name "KRAS"; annotation "GTPase KRas"; Pfam "[Miro] Miro-like protein|[Ras] Ras family|[Arf] ADP-ribosylation factor family|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively Scaffold010 rebuild exon 1167083 1167195 . + . gene_id "RvY_14485"; transcript_id "RvY_14485.1"; Scaffold010 rebuild exon 1167395 1167522 . + . gene_id "RvY_14485"; transcript_id "RvY_14485.1"; Scaffold010 rebuild exon 1167678 1168015 . + . gene_id "RvY_14485"; transcript_id "RvY_14485.1"; Scaffold010 rebuild transcript 1169309 1171062 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; gene_name "K00804"; annotation "Geranylgeranyl pyrophosphate synthase"; Pfam "[polyprenyl_synt] Polyprenyl synthetase"; CDD "Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS), head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesis various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the Scaffold010 rebuild exon 1169309 1169393 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1169462 1169576 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1169649 1169748 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1169813 1169952 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1170049 1170267 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1170385 1170431 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1170510 1170595 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1170740 1170808 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1170893 1170947 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild exon 1171061 1171062 . - . gene_id "RvY_14486"; transcript_id "RvY_14486.1"; Scaffold010 rebuild transcript 1173671 1176387 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; gene_name "lhr"; annotation "ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.1.-]"; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K03724"; similar_genes "RH28_ORYSJ(e-value:1.2e-13;bit-score:74.0)"; Scaffold010 rebuild exon 1173671 1174403 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild exon 1174558 1174892 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild exon 1174962 1175252 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild exon 1175317 1175626 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild exon 1175704 1175803 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild exon 1175865 1175956 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild exon 1176023 1176387 . + . gene_id "RvY_14487"; transcript_id "RvY_14487.1"; Scaffold010 rebuild transcript 1176591 1177349 . - . gene_id "RvY_14488"; transcript_id "RvY_14488.1"; gene_name "manB"; annotation "Phosphomannomutase 2"; Pfam "[PMM] Eukaryotic phosphomannomutase|[Hydrolase_3] haloacid dehalogenase-like hydrolase"; CDD "phosphomannomutase; Provisional"; EC "EC5.4.2.8"; KO "K01840"; similar_genes "PMM2_MOUSE(e-value:2.1e-68;bit-score:256.0)"; Scaffold010 rebuild exon 1176591 1177349 . - . gene_id "RvY_14488"; transcript_id "RvY_14488.1"; Scaffold010 rebuild transcript 1177757 1178086 . - . gene_id "RvY_14489"; transcript_id "RvY_14489.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1177757 1178086 . - . gene_id "RvY_14489"; transcript_id "RvY_14489.1"; Scaffold010 rebuild transcript 1178158 1179217 . - . gene_id "RvY_14490"; transcript_id "RvY_14490.1"; annotation "hypothetical protein."; Pfam "[Ribosomal_S10] Ribosomal protein S10p/S20e"; similar_genes "RT10_MOUSE(e-value:7.2e-16;bit-score:82.0)"; Scaffold010 rebuild exon 1178158 1178253 . - . gene_id "RvY_14490"; transcript_id "RvY_14490.1"; Scaffold010 rebuild exon 1178379 1178468 . - . gene_id "RvY_14490"; transcript_id "RvY_14490.1"; Scaffold010 rebuild exon 1178535 1178643 . - . gene_id "RvY_14490"; transcript_id "RvY_14490.1"; Scaffold010 rebuild exon 1178740 1178870 . - . gene_id "RvY_14490"; transcript_id "RvY_14490.1"; Scaffold010 rebuild exon 1178939 1179217 . - . gene_id "RvY_14490"; transcript_id "RvY_14490.1"; Scaffold010 rebuild transcript 1179595 1181142 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; gene_name "SMC_Nse1"; annotation "hypothetical protein."; Pfam "[SMC_Nse1] Nse1 non-SMC component of SMC5-6 complex"; CDD "Nse1 non-SMC component of SMC5-6 complex. S. cerevisiae Nse1 forms part of a complex with SMC5-SMC6 This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism. It is conserved in eukaryotes from yeast to human."; Scaffold010 rebuild exon 1179595 1179811 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild exon 1179869 1180008 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild exon 1180115 1180192 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild exon 1180308 1180448 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild exon 1180516 1180647 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild exon 1180724 1180868 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild exon 1180970 1181142 . + . gene_id "RvY_14491"; transcript_id "RvY_14491.1"; Scaffold010 rebuild transcript 1183082 1185487 . + . gene_id "RvY_14492"; transcript_id "RvY_14492.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1183082 1183375 . + . gene_id "RvY_14492"; transcript_id "RvY_14492.1"; Scaffold010 rebuild exon 1185176 1185487 . + . gene_id "RvY_14492"; transcript_id "RvY_14492.1"; Scaffold010 rebuild transcript 1183082 1183513 . + . gene_id "RvY_14492"; transcript_id "RvY_14492.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1183082 1183513 . + . gene_id "RvY_14492"; transcript_id "RvY_14492.2"; Scaffold010 rebuild transcript 1185871 1188208 . + . gene_id "RvY_14493"; transcript_id "RvY_14493.1"; gene_name "SNW1"; annotation "SNW domain-containing protein 1"; Pfam "[GLE1] GLE1-like protein"; KO "K06063"; Scaffold010 rebuild exon 1185871 1185889 . + . gene_id "RvY_14493"; transcript_id "RvY_14493.1"; Scaffold010 rebuild exon 1185952 1186452 . + . gene_id "RvY_14493"; transcript_id "RvY_14493.1"; Scaffold010 rebuild exon 1186525 1186871 . + . gene_id "RvY_14493"; transcript_id "RvY_14493.1"; Scaffold010 rebuild exon 1186929 1187653 . + . gene_id "RvY_14493"; transcript_id "RvY_14493.1"; Scaffold010 rebuild exon 1187857 1188208 . + . gene_id "RvY_14493"; transcript_id "RvY_14493.1"; Scaffold010 rebuild transcript 1188437 1189694 . - . gene_id "RvY_14494"; transcript_id "RvY_14494.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1188437 1189026 . - . gene_id "RvY_14494"; transcript_id "RvY_14494.1"; Scaffold010 rebuild exon 1189313 1189694 . - . gene_id "RvY_14494"; transcript_id "RvY_14494.1"; Scaffold010 rebuild transcript 1190423 1191940 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; gene_name "COG5273"; annotation "hypothetical protein."; Pfam "[zf-DHHC] DHHC palmitoyltransferase"; CDD "Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]"; EC "EC2.3.1.-"; similar_genes "ZDH16_BOVIN(e-value:6.5e-21;bit-score:99.0)"; Scaffold010 rebuild exon 1190423 1190646 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; Scaffold010 rebuild exon 1190709 1191026 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; Scaffold010 rebuild exon 1191097 1191220 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; Scaffold010 rebuild exon 1191315 1191428 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; Scaffold010 rebuild exon 1191528 1191608 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; Scaffold010 rebuild exon 1191704 1191940 . - . gene_id "RvY_14495"; transcript_id "RvY_14495.1"; Scaffold010 rebuild transcript 1192813 1194939 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1192813 1193013 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; Scaffold010 rebuild exon 1193071 1193316 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; Scaffold010 rebuild exon 1193398 1193724 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; Scaffold010 rebuild exon 1194271 1194448 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; Scaffold010 rebuild exon 1194551 1194643 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; Scaffold010 rebuild exon 1194734 1194939 . + . gene_id "RvY_14496"; transcript_id "RvY_14496.1"; Scaffold010 rebuild transcript 1195481 1196029 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1195481 1195659 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.1"; Scaffold010 rebuild exon 1195783 1196029 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.1"; Scaffold010 rebuild transcript 1195481 1198243 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1195481 1195659 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.2"; Scaffold010 rebuild exon 1195783 1195927 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.2"; Scaffold010 rebuild exon 1196085 1196155 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.2"; Scaffold010 rebuild exon 1198225 1198243 . + . gene_id "RvY_14497"; transcript_id "RvY_14497.2"; Scaffold010 rebuild transcript 1195526 1195738 . - . gene_id "RvY_14498"; transcript_id "RvY_14498.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1195526 1195738 . - . gene_id "RvY_14498"; transcript_id "RvY_14498.1"; Scaffold010 rebuild transcript 1198519 1201689 . + . gene_id "RvY_14499"; transcript_id "RvY_14499.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1198519 1198716 . + . gene_id "RvY_14499"; transcript_id "RvY_14499.1"; Scaffold010 rebuild exon 1199621 1199796 . + . gene_id "RvY_14499"; transcript_id "RvY_14499.1"; Scaffold010 rebuild exon 1199897 1200176 . + . gene_id "RvY_14499"; transcript_id "RvY_14499.1"; Scaffold010 rebuild exon 1200257 1200977 . + . gene_id "RvY_14499"; transcript_id "RvY_14499.1"; Scaffold010 rebuild exon 1201199 1201689 . + . gene_id "RvY_14499"; transcript_id "RvY_14499.1"; Scaffold010 rebuild transcript 1205829 1206986 . + . gene_id "RvY_14500"; transcript_id "RvY_14500.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1205829 1206986 . + . gene_id "RvY_14500"; transcript_id "RvY_14500.1"; Scaffold010 rebuild transcript 1208599 1209887 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; gene_name "TFIIE2"; annotation "transcription initiation factor TFIIE beta subunit"; Pfam "[TFIIE_beta] TFIIE beta subunit core domain"; KO "K03137"; Scaffold010 rebuild exon 1208599 1208715 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; Scaffold010 rebuild exon 1208812 1209021 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; Scaffold010 rebuild exon 1209112 1209297 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; Scaffold010 rebuild exon 1209361 1209468 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; Scaffold010 rebuild exon 1209546 1209637 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; Scaffold010 rebuild exon 1209731 1209887 . - . gene_id "RvY_14501"; transcript_id "RvY_14501.1"; Scaffold010 rebuild transcript 1210451 1211950 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; gene_name "RP-L5e"; annotation "60S ribosomal protein L5"; Pfam "[Ribosomal_L18_c] Ribosomal L18 C-terminal region|[Ribosomal_L18p] Ribosomal L18p/L5e family"; CDD "60S ribosomal protein L5; Provisional"; KO "K02932"; similar_genes "(1)RL5_BOMMO(e-value:4.0e-114;bit-score:408.0)(2)RL5_BOMMO(e-value:1.0e-114;bit-score:410.0)"; Scaffold010 rebuild exon 1210451 1210580 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild exon 1210721 1210836 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild exon 1210898 1211032 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild exon 1211141 1211343 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild exon 1211428 1211605 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild exon 1211686 1211780 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild exon 1211854 1211950 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.1"; Scaffold010 rebuild transcript 1210451 1211950 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; gene_name "RP-L5e"; annotation "60S ribosomal protein L5"; Pfam "[Ribosomal_L18_c] Ribosomal L18 C-terminal region|[Ribosomal_L18p] Ribosomal L18p/L5e family"; CDD "60S ribosomal protein L5; Provisional"; KO "K02932"; similar_genes "(1)RL5_BOMMO(e-value:4.0e-114;bit-score:408.0)(2)RL5_BOMMO(e-value:1.0e-114;bit-score:410.0)"; Scaffold010 rebuild exon 1210451 1210453 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1210511 1210580 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1210721 1210836 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1210898 1211032 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1211141 1211343 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1211428 1211605 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1211686 1211780 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild exon 1211854 1211950 . + . gene_id "RvY_14502"; transcript_id "RvY_14502.2"; Scaffold010 rebuild transcript 1212299 1219564 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; gene_name "PSME4"; annotation "proteasome activator subunit 4"; Pfam "[DUF3437]"; KO "K06699"; similar_genes "PSME4_HUMAN(e-value:9.1e-12;bit-score:68.0)"; Scaffold010 rebuild exon 1212299 1212721 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1212785 1213072 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1213139 1213611 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1213840 1214260 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1214470 1214798 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1214948 1215581 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1215854 1216134 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1216192 1216724 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1216946 1217367 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1217441 1217582 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1217652 1218053 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1218170 1218710 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1218916 1219286 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild exon 1219353 1219564 . - . gene_id "RvY_14503"; transcript_id "RvY_14503.1"; Scaffold010 rebuild transcript 1220228 1223026 . - . gene_id "RvY_14504"; transcript_id "RvY_14504.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1220228 1223026 . - . gene_id "RvY_14504"; transcript_id "RvY_14504.1"; Scaffold010 rebuild transcript 1223495 1224256 . - . gene_id "RvY_14505"; transcript_id "RvY_14505.1"; product "CAHS13"; annotation "CAHS13 | hypothetical protein."; Scaffold010 rebuild exon 1223495 1223767 . - . gene_id "RvY_14505"; transcript_id "RvY_14505.1"; Scaffold010 rebuild exon 1223839 1223913 . - . gene_id "RvY_14505"; transcript_id "RvY_14505.1"; Scaffold010 rebuild exon 1224008 1224256 . - . gene_id "RvY_14505"; transcript_id "RvY_14505.1"; Scaffold010 rebuild transcript 1223936 1224256 . - . gene_id "RvY_14505"; transcript_id "RvY_14505.2"; product "CAHS13"; annotation "CAHS13 | hypothetical protein."; Scaffold010 rebuild exon 1223936 1224256 . - . gene_id "RvY_14505"; transcript_id "RvY_14505.2"; Scaffold010 rebuild transcript 1224516 1225649 . + . gene_id "RvY_14506"; transcript_id "RvY_14506.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1224516 1225421 . + . gene_id "RvY_14506"; transcript_id "RvY_14506.1"; Scaffold010 rebuild exon 1225638 1225649 . + . gene_id "RvY_14506"; transcript_id "RvY_14506.1"; Scaffold010 rebuild transcript 1225970 1227834 . + . gene_id "RvY_14507"; transcript_id "RvY_14507.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1225970 1226228 . + . gene_id "RvY_14507"; transcript_id "RvY_14507.1"; Scaffold010 rebuild exon 1226288 1227834 . + . gene_id "RvY_14507"; transcript_id "RvY_14507.1"; Scaffold010 rebuild transcript 1227885 1230269 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; gene_name "CBS"; annotation "Cystathionine beta-synthase"; Pfam "[PALP] Pyridoxal-phosphate dependent enzyme|[CBS]"; CDD "cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven."; EC "EC4.2.1.22"; KO "K01697"; similar_genes "CBS_HUMAN(e-value:2.4e-84;bit-score:309.0)"; Scaffold010 rebuild exon 1227885 1228018 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1228081 1228165 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1228235 1228478 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1228582 1228765 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1228848 1229224 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1229307 1229449 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1229520 1229734 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1229816 1229922 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild exon 1229995 1230269 . - . gene_id "RvY_14508"; transcript_id "RvY_14508.1"; Scaffold010 rebuild transcript 1231964 1233767 . - . gene_id "RvY_14509"; transcript_id "RvY_14509.1"; gene_name "CG12581"; annotation "hypothetical protein."; CDD "CG12581 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether."; Scaffold010 rebuild exon 1231964 1233475 . - . gene_id "RvY_14509"; transcript_id "RvY_14509.1"; Scaffold010 rebuild exon 1233690 1233767 . - . gene_id "RvY_14509"; transcript_id "RvY_14509.1"; Scaffold010 rebuild transcript 1235621 1251432 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1235621 1235684 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1235752 1235988 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1236078 1236999 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1237133 1237747 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1237988 1238554 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1240191 1240337 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1240503 1240988 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1241155 1241581 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1241679 1241797 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1241864 1242623 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1242693 1242808 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1242881 1243387 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1243520 1243766 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1243827 1244433 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1244622 1244740 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1244862 1245007 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1245196 1245316 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1245568 1245666 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1245831 1245887 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1246280 1246458 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1246757 1247491 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1247611 1248790 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1248976 1249068 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1249298 1249489 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1249862 1250122 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1250371 1250577 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1250653 1250780 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1250872 1250899 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild exon 1251340 1251432 . - . gene_id "RvY_14510"; transcript_id "RvY_14510.1"; Scaffold010 rebuild transcript 1252711 1253615 . - . gene_id "RvY_14511"; transcript_id "RvY_14511.1"; annotation "hypothetical protein."; Pfam "[DUF3128]"; Scaffold010 rebuild exon 1252711 1252810 . - . gene_id "RvY_14511"; transcript_id "RvY_14511.1"; Scaffold010 rebuild exon 1252908 1253053 . - . gene_id "RvY_14511"; transcript_id "RvY_14511.1"; Scaffold010 rebuild exon 1253180 1253298 . - . gene_id "RvY_14511"; transcript_id "RvY_14511.1"; Scaffold010 rebuild exon 1253413 1253458 . - . gene_id "RvY_14511"; transcript_id "RvY_14511.1"; Scaffold010 rebuild exon 1253574 1253615 . - . gene_id "RvY_14511"; transcript_id "RvY_14511.1"; Scaffold010 rebuild transcript 1254203 1255333 . + . gene_id "RvY_14512"; transcript_id "RvY_14512.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1254203 1255333 . + . gene_id "RvY_14512"; transcript_id "RvY_14512.1"; Scaffold010 rebuild transcript 1255806 1257816 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; gene_name "PKD2L1"; annotation "polycystin 2L1"; Pfam "[PKD_channel] Polycystin cation channel|[Ion_trans] Ion transport protein"; CDD "Polycystin cation channel. This family contains the cation channel region of PKD1 and PKD2 proteins."; KO "K04990"; similar_genes "PK2L1_HUMAN(e-value:4.3e-20;bit-score:96.0)"; Scaffold010 rebuild exon 1255806 1256220 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild exon 1256300 1256406 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild exon 1256474 1256733 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild exon 1256808 1257032 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild exon 1257097 1257370 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild exon 1257436 1257561 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild exon 1257634 1257816 . + . gene_id "RvY_14513"; transcript_id "RvY_14513.1"; Scaffold010 rebuild transcript 1258015 1258695 . + . gene_id "RvY_14514"; transcript_id "RvY_14514.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1258015 1258323 . + . gene_id "RvY_14514"; transcript_id "RvY_14514.1"; Scaffold010 rebuild exon 1258422 1258474 . + . gene_id "RvY_14514"; transcript_id "RvY_14514.1"; Scaffold010 rebuild exon 1258536 1258695 . + . gene_id "RvY_14514"; transcript_id "RvY_14514.1"; Scaffold010 rebuild transcript 1259131 1263820 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; gene_name "eEF-2"; annotation "Elongation factor 2"; Pfam "[EFG_C] Elongation factor G C-terminus|[EFG_IV] Elongation factor G, domain IV|[GTP_EFTU_D2] Elongation factor Tu domain 2|[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "elongation factor EF-2; Reviewed"; EC "EC3.6.5.3"; KO "K03234"; similar_genes "EF2_DROME(e-value:4.1e-292;bit-score:999.0)"; Scaffold010 rebuild exon 1259131 1259655 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1259909 1260461 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1260713 1260933 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1260999 1261282 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1261554 1261907 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1262123 1262311 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1262530 1262726 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1262810 1262910 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1262985 1263098 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild exon 1263818 1263820 . - . gene_id "RvY_14515"; transcript_id "RvY_14515.1"; Scaffold010 rebuild transcript 1264559 1264882 . - . gene_id "RvY_14516"; transcript_id "RvY_14516.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1264559 1264882 . - . gene_id "RvY_14516"; transcript_id "RvY_14516.1"; Scaffold010 rebuild transcript 1266060 1270993 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; gene_name "PKN"; annotation "Serine/threonine-protein kinase N2"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[HR1] Hr1 repeat|[Pkinase_C] Protein kinase C terminal domain"; CDD "STKc_PKN: Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis."; EC "EC2.7.11.13"; KO "K06071"; similar_genes "PKN2_HUMAN(e-value:4.1e-154;bit-score:541.0)"; Scaffold010 rebuild exon 1266060 1266104 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1266365 1266680 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1267049 1267185 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1267287 1267470 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1267735 1268256 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1268329 1268438 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1268577 1268720 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1268829 1269272 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1269441 1269806 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1269873 1270024 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1270237 1270564 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1270626 1270766 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild exon 1270850 1270993 . + . gene_id "RvY_14517"; transcript_id "RvY_14517.1"; Scaffold010 rebuild transcript 1271366 1272251 . - . gene_id "RvY_14518"; transcript_id "RvY_14518.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1271366 1272048 . - . gene_id "RvY_14518"; transcript_id "RvY_14518.1"; Scaffold010 rebuild exon 1272137 1272251 . - . gene_id "RvY_14518"; transcript_id "RvY_14518.1"; Scaffold010 rebuild transcript 1273314 1274859 . - . gene_id "RvY_14519"; transcript_id "RvY_14519.1"; annotation "hypothetical protein."; Pfam "[Reticulon]"; Scaffold010 rebuild exon 1273314 1273600 . - . gene_id "RvY_14519"; transcript_id "RvY_14519.1"; Scaffold010 rebuild exon 1273671 1274267 . - . gene_id "RvY_14519"; transcript_id "RvY_14519.1"; Scaffold010 rebuild exon 1274363 1274392 . - . gene_id "RvY_14519"; transcript_id "RvY_14519.1"; Scaffold010 rebuild exon 1274547 1274859 . - . gene_id "RvY_14519"; transcript_id "RvY_14519.1"; Scaffold010 rebuild transcript 1276326 1277199 . + . gene_id "RvY_14520"; transcript_id "RvY_14520.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1276326 1276734 . + . gene_id "RvY_14520"; transcript_id "RvY_14520.1"; Scaffold010 rebuild exon 1276772 1277199 . + . gene_id "RvY_14520"; transcript_id "RvY_14520.1"; Scaffold010 rebuild transcript 1278901 1279559 . + . gene_id "RvY_14521"; transcript_id "RvY_14521.1"; gene_name "DUSP"; annotation "dual specificity phosphatase [EC:3.1.3.16 3.1.3.48]"; Pfam "[DSPc] Dual specificity phosphatase, catalytic domain"; CDD "Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower Scaffold010 rebuild exon 1278901 1279162 . + . gene_id "RvY_14521"; transcript_id "RvY_14521.1"; Scaffold010 rebuild exon 1279222 1279559 . + . gene_id "RvY_14521"; transcript_id "RvY_14521.1"; Scaffold010 rebuild transcript 1279814 1280331 . - . gene_id "RvY_14522"; transcript_id "RvY_14522.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1279814 1280027 . - . gene_id "RvY_14522"; transcript_id "RvY_14522.1"; Scaffold010 rebuild exon 1280255 1280331 . - . gene_id "RvY_14522"; transcript_id "RvY_14522.1"; Scaffold010 rebuild transcript 1281535 1283642 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; gene_name "K01556"; annotation "Kynureninase"; Pfam "[Aminotran_5] Aminotransferase class-V"; CDD "kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen."; EC "EC3.7.1.3"; KO "K01556"; similar_genes "KYNU_MOUSE(e-value:6.9e-63;bit-score:238.0)"; Scaffold010 rebuild exon 1281535 1281733 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1281802 1282046 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1282112 1282204 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1282266 1282340 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1282418 1282564 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1282629 1282727 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1282794 1282944 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1283046 1283131 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1283202 1283435 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild exon 1283511 1283642 . + . gene_id "RvY_14523"; transcript_id "RvY_14523.1"; Scaffold010 rebuild transcript 1284652 1286437 . + . gene_id "RvY_14524"; transcript_id "RvY_14524.1"; gene_name "MDH_like"; annotation "hypothetical protein."; CDD "Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others."; Scaffold010 rebuild exon 1284652 1285324 . + . gene_id "RvY_14524"; transcript_id "RvY_14524.1"; Scaffold010 rebuild exon 1285740 1286437 . + . gene_id "RvY_14524"; transcript_id "RvY_14524.1"; Scaffold010 rebuild transcript 1287053 1291792 . - . gene_id "RvY_14525"; transcript_id "RvY_14525.1"; gene_name "RRM"; annotation "putative RNA-binding protein 38"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)"; CDD "RNA recognition motif."; similar_genes "RBM38_CHICK(e-value:1.3e-40;bit-score:164.0)"; Scaffold010 rebuild exon 1287053 1287530 . - . gene_id "RvY_14525"; transcript_id "RvY_14525.1"; Scaffold010 rebuild exon 1288174 1288234 . - . gene_id "RvY_14525"; transcript_id "RvY_14525.1"; Scaffold010 rebuild exon 1290845 1290968 . - . gene_id "RvY_14525"; transcript_id "RvY_14525.1"; Scaffold010 rebuild exon 1291307 1291792 . - . gene_id "RvY_14525"; transcript_id "RvY_14525.1"; Scaffold010 rebuild transcript 1288289 1288495 . + . gene_id "RvY_14526"; transcript_id "RvY_14526.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1288289 1288495 . + . gene_id "RvY_14526"; transcript_id "RvY_14526.1"; Scaffold010 rebuild transcript 1294851 1297990 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; gene_name "K00327"; annotation "NADPH--cytochrome P450 reductase"; Pfam "[NAD_binding_1] Oxidoreductase NAD-binding domain|[Flavodoxin_1] Flavodoxin|[FAD_binding_1] FAD binding domain"; CDD "NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH."; EC "EC1.6.2.4"; KO "K00327"; similar_genes "NCPR_PIG(e-value:6.6e-76;bit-score:281.0)"; Scaffold010 rebuild exon 1294851 1294995 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1295064 1295292 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1295354 1295765 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1296145 1296326 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1296422 1296540 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1296705 1296821 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1296931 1297119 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1297192 1297595 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1297654 1297711 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild exon 1297776 1297990 . - . gene_id "RvY_14527"; transcript_id "RvY_14527.1"; Scaffold010 rebuild transcript 1298293 1298550 . + . gene_id "RvY_14528"; transcript_id "RvY_14528.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1298293 1298550 . + . gene_id "RvY_14528"; transcript_id "RvY_14528.1"; Scaffold010 rebuild transcript 1299175 1306639 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; gene_name "EST1A"; annotation "EST1-like protein A [EC:3.1.-.-]"; Pfam "[EST1] Telomerase activating protein Est1|[PIN_4] PIN domain|[EST1_DNA_bind] Est1 DNA/RNA binding domain"; EC "EC3.1.-.-"; KO "K11124"; Scaffold010 rebuild exon 1299175 1299286 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1299351 1299770 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1299841 1300200 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1300407 1301007 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1301741 1302129 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1302398 1302680 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1302761 1302910 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1302984 1303182 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1303261 1303496 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1303614 1303803 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1303872 1303934 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1304010 1304077 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1304160 1304302 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1304372 1304594 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1304674 1304768 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1304849 1304949 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1305031 1305417 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1305717 1306044 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1306107 1306279 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1306341 1306437 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild exon 1306521 1306639 . + . gene_id "RvY_14529"; transcript_id "RvY_14529.1"; Scaffold010 rebuild transcript 1307730 1308200 . + . gene_id "RvY_14530"; transcript_id "RvY_14530.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1307730 1307892 . + . gene_id "RvY_14530"; transcript_id "RvY_14530.1"; Scaffold010 rebuild exon 1308013 1308200 . + . gene_id "RvY_14530"; transcript_id "RvY_14530.1"; Scaffold010 rebuild transcript 1308232 1309276 . + . gene_id "RvY_14531"; transcript_id "RvY_14531.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1308232 1308296 . + . gene_id "RvY_14531"; transcript_id "RvY_14531.1"; Scaffold010 rebuild exon 1308377 1308513 . + . gene_id "RvY_14531"; transcript_id "RvY_14531.1"; Scaffold010 rebuild exon 1308867 1308993 . + . gene_id "RvY_14531"; transcript_id "RvY_14531.1"; Scaffold010 rebuild exon 1309102 1309276 . + . gene_id "RvY_14531"; transcript_id "RvY_14531.1"; Scaffold010 rebuild transcript 1309909 1310491 . - . gene_id "RvY_14532"; transcript_id "RvY_14532.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1309909 1310053 . - . gene_id "RvY_14532"; transcript_id "RvY_14532.1"; Scaffold010 rebuild exon 1310391 1310491 . - . gene_id "RvY_14532"; transcript_id "RvY_14532.1"; Scaffold010 rebuild transcript 1311127 1319459 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; gene_name "TOP2"; annotation "DNA topoisomerase 2-beta"; Pfam "[DNA_gyraseB] DNA gyrase B|[HATPase_c] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase|[DNA_topoisoIV] DNA gyrase/topoisomerase IV, subunit A|[Toprim]"; CDD "DNA topoisomerase II; Provisional"; EC "EC5.99.1.3"; KO "K03164"; similar_genes "TOP2B_CHICK(e-value:3.3e-92;bit-score:335.0)"; Scaffold010 rebuild exon 1311127 1311136 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1311784 1311884 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1312268 1312465 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1312696 1312853 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1312929 1313184 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1313255 1313473 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1313534 1313755 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1313834 1313935 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1314007 1314201 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1314266 1314502 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1314567 1314928 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1314999 1315176 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1315276 1315494 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1315695 1316129 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1316200 1316420 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1316496 1316631 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1316904 1317099 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1317174 1317460 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1317519 1317602 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1317693 1317926 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1318123 1318578 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1318651 1318998 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild exon 1319286 1319459 . + . gene_id "RvY_14533"; transcript_id "RvY_14533.1"; Scaffold010 rebuild transcript 1320342 1320692 . - . gene_id "RvY_14534"; transcript_id "RvY_14534.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1320342 1320692 . - . gene_id "RvY_14534"; transcript_id "RvY_14534.1"; Scaffold010 rebuild transcript 1322313 1328431 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; annotation "hypothetical protein."; Pfam "[VWC] von Willebrand factor type C domain"; Scaffold010 rebuild exon 1322313 1322355 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1322503 1322799 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1322862 1323110 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1323184 1323417 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1323480 1323955 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1324038 1324824 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1324977 1325507 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1325719 1326222 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1326427 1327293 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1327488 1327694 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1327778 1327873 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1327947 1328204 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild exon 1328265 1328431 . + . gene_id "RvY_14535"; transcript_id "RvY_14535.1"; Scaffold010 rebuild transcript 1329029 1329473 . + . gene_id "RvY_14536"; transcript_id "RvY_14536.1"; gene_name "BAF"; annotation "putative Barrier-to-autointegration factor"; Pfam "[BAF] Barrier to autointegration factor"; CDD "Barrier to autointegration factor. The BAF protein has a SAM-domain-like bundle of orthogonally packed alpha-hairpins - one classic and one pseudo helix-hairpin-helix motif. The protein is involved in the prevention of retroviral DNA integration."; similar_genes "BAF_RAT(e-value:2.0e-26;bit-score:117.0)"; Scaffold010 rebuild exon 1329029 1329157 . + . gene_id "RvY_14536"; transcript_id "RvY_14536.1"; Scaffold010 rebuild exon 1329221 1329363 . + . gene_id "RvY_14536"; transcript_id "RvY_14536.1"; Scaffold010 rebuild exon 1329470 1329473 . + . gene_id "RvY_14536"; transcript_id "RvY_14536.1"; Scaffold010 rebuild transcript 1329747 1333003 . - . gene_id "RvY_14537"; transcript_id "RvY_14537.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1329747 1330151 . - . gene_id "RvY_14537"; transcript_id "RvY_14537.1"; Scaffold010 rebuild exon 1330245 1331500 . - . gene_id "RvY_14537"; transcript_id "RvY_14537.1"; Scaffold010 rebuild exon 1331572 1333003 . - . gene_id "RvY_14537"; transcript_id "RvY_14537.1"; Scaffold010 rebuild transcript 1332393 1332938 . + . gene_id "RvY_14538"; transcript_id "RvY_14538.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1332393 1332573 . + . gene_id "RvY_14538"; transcript_id "RvY_14538.1"; Scaffold010 rebuild exon 1332652 1332938 . + . gene_id "RvY_14538"; transcript_id "RvY_14538.1"; Scaffold010 rebuild transcript 1333664 1335177 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; annotation "hypothetical protein."; Pfam "[DUF3105]"; Scaffold010 rebuild exon 1333664 1333780 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1333868 1333945 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1334039 1334077 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1334222 1334277 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1334381 1334459 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1334527 1334655 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1334726 1334803 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild exon 1334890 1335177 . + . gene_id "RvY_14539"; transcript_id "RvY_14539.1"; Scaffold010 rebuild transcript 1337168 1339043 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; annotation "hypothetical protein."; Pfam "(1)[TRAUB] Apoptosis-antagonizing transcription factor, C-terminal|[AATF-Che1] Apoptosis antagonizing transcription factor"; KO "(1)K14782"; Scaffold010 rebuild exon 1337168 1337402 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1337473 1337610 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1337695 1337845 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1337932 1338039 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1338130 1338235 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1338322 1338441 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1338504 1338631 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1338725 1338877 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild exon 1338944 1339043 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.1"; Scaffold010 rebuild transcript 1336985 1337957 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.2"; annotation "hypothetical protein."; Pfam "(1)[TRAUB] Apoptosis-antagonizing transcription factor, C-terminal|[AATF-Che1] Apoptosis antagonizing transcription factor"; KO "(1)K14782"; Scaffold010 rebuild exon 1336985 1337402 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.2"; Scaffold010 rebuild exon 1337473 1337610 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.2"; Scaffold010 rebuild exon 1337695 1337957 . + . gene_id "RvY_14540"; transcript_id "RvY_14540.2"; Scaffold010 rebuild transcript 1340001 1352024 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; gene_name "ASAP"; annotation "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein"; Pfam "[Ank_4] Ankyrin repeats (many copies)|[PH]|[ArfGap] Putative GTPase activating protein for Arf|[SH3_2] Variant SH3 domain|[Ank_2] Ankyrin repeats (3 copies)|[SH3_1] SH3 domain|[Ank] Ankyrin repeat|[Ank_5] Ankyrin repeats (many copies)"; KO "K12488"; similar_genes "ASAP2_HUMAN(e-value:4.2e-18;bit-score:89.0)"; Scaffold010 rebuild exon 1340001 1340165 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1346544 1346616 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1346921 1347013 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1347115 1347176 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1347289 1347363 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1347428 1347477 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1347548 1347626 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1347734 1347787 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1347873 1347958 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1348195 1348366 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1348452 1348664 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1348754 1348801 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1348885 1348924 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1349150 1349377 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1349446 1349668 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1350012 1350192 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1350259 1350347 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1350412 1350595 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1350832 1350900 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1350988 1351741 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1351810 1351880 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild exon 1351941 1352024 . + . gene_id "RvY_14541"; transcript_id "RvY_14541.1"; Scaffold010 rebuild transcript 1352597 1356248 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; gene_name "PABPC1"; annotation "Polyadenylate-binding protein 4"; Pfam "[RRM_1] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[CbiG_mid] Cobalamin biosynthesis central region|[RRM_3] RNA binding motif|[RRM_5] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|[PABP] Poly-adenylate binding protein, unique domain|[RRM_6] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)|[Limkain-b1] Limkain b1"; CDD "polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, and of unknown tissue range."; KO "K13126"; similar_genes "PABP4_HUMAN(e-value:1.7e-76;bit-score:283.0)"; Scaffold010 rebuild exon 1352597 1352728 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1352789 1352998 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1353083 1353243 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1353724 1354139 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1354448 1354629 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1354825 1355064 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1355150 1355381 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1355491 1355609 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1355790 1355983 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild exon 1356056 1356248 . - . gene_id "RvY_14542"; transcript_id "RvY_14542.1"; Scaffold010 rebuild transcript 1357849 1358772 . - . gene_id "RvY_14543"; transcript_id "RvY_14543.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1357849 1358772 . - . gene_id "RvY_14543"; transcript_id "RvY_14543.1"; Scaffold010 rebuild transcript 1357861 1358643 . + . gene_id "RvY_14544"; transcript_id "RvY_14544.1"; gene_name "RP-L6e"; annotation "large subunit ribosomal protein L6e"; Pfam "[Ribosomal_L6e] Ribosomal protein L6e|[Ribosomal_L6e_N] Ribosomal protein L6, N-terminal domain"; KO "K02934"; similar_genes "RL6_DICDI(e-value:2.3e-25;bit-score:113.0)"; Scaffold010 rebuild exon 1357861 1358643 . + . gene_id "RvY_14544"; transcript_id "RvY_14544.1"; Scaffold010 rebuild transcript 1358876 1374774 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; gene_name "KIF1S"; annotation "Kinesin-like protein KIF13A"; Pfam "[DUF3694] Kinesin protein|[FHA]|[KIF1B] Kinesin protein 1B|[Kinesin] Kinesin motor domain|[CAP_GLY] CAP-Gly domain"; CDD "Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; KO "K10392"; similar_genes "KI13A_MOUSE(e-value:9.4e-103;bit-score:370.0)"; Scaffold010 rebuild exon 1358876 1359192 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1359283 1359459 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1359524 1360102 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1360176 1360220 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1360298 1360415 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1360517 1360750 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1360817 1361092 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1361161 1361344 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1361433 1361559 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1361615 1361994 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1362167 1362483 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1362548 1362742 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1362828 1362980 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1363055 1363198 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1363290 1363452 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1363523 1363733 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1363805 1363942 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1363999 1364111 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1364187 1364323 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1364387 1364521 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1365325 1365426 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1365495 1365707 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1365781 1366140 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1366229 1366316 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1366387 1366567 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1366657 1366749 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1366874 1366944 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1374155 1374263 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild exon 1374723 1374774 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.1"; Scaffold010 rebuild transcript 1358876 1374774 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; gene_name "KIF1S"; annotation "Kinesin-like protein KIF13A"; Pfam "[DUF3694] Kinesin protein|[FHA]|[KIF1B] Kinesin protein 1B|[Kinesin] Kinesin motor domain|[CAP_GLY] CAP-Gly domain"; CDD "Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively."; KO "K10392"; similar_genes "KI13A_MOUSE(e-value:9.4e-103;bit-score:370.0)"; Scaffold010 rebuild exon 1358876 1359192 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1359283 1359459 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1359524 1360102 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1360298 1360415 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1360517 1360750 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1360817 1361092 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1361161 1361344 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1361433 1361559 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1361615 1361994 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1362167 1362483 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1362548 1362742 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1362828 1362980 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1363055 1363198 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1363290 1363452 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1363523 1363733 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1363805 1363942 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1363999 1364111 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1364187 1364323 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1364387 1364521 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1365325 1365426 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1365495 1365707 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1365781 1366140 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1366229 1366316 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1366387 1366567 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1366657 1366749 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1366874 1366944 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1374155 1374263 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild exon 1374723 1374774 . - . gene_id "RvY_14545"; transcript_id "RvY_14545.2"; Scaffold010 rebuild transcript 1372683 1372964 . + . gene_id "RvY_14546"; transcript_id "RvY_14546.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1372683 1372964 . + . gene_id "RvY_14546"; transcript_id "RvY_14546.1"; Scaffold010 rebuild transcript 1376411 1377290 . + . gene_id "RvY_14547"; transcript_id "RvY_14547.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1376411 1376528 . + . gene_id "RvY_14547"; transcript_id "RvY_14547.1"; Scaffold010 rebuild exon 1376709 1376780 . + . gene_id "RvY_14547"; transcript_id "RvY_14547.1"; Scaffold010 rebuild exon 1377028 1377290 . + . gene_id "RvY_14547"; transcript_id "RvY_14547.1"; Scaffold010 rebuild transcript 1378563 1379549 . - . gene_id "RvY_14548"; transcript_id "RvY_14548.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1378563 1378939 . - . gene_id "RvY_14548"; transcript_id "RvY_14548.1"; Scaffold010 rebuild exon 1379155 1379250 . - . gene_id "RvY_14548"; transcript_id "RvY_14548.1"; Scaffold010 rebuild exon 1379447 1379549 . - . gene_id "RvY_14548"; transcript_id "RvY_14548.1"; Scaffold010 rebuild transcript 1379565 1380391 . - . gene_id "RvY_14549"; transcript_id "RvY_14549.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1379565 1379831 . - . gene_id "RvY_14549"; transcript_id "RvY_14549.1"; Scaffold010 rebuild exon 1379928 1380053 . - . gene_id "RvY_14549"; transcript_id "RvY_14549.1"; Scaffold010 rebuild exon 1380272 1380391 . - . gene_id "RvY_14549"; transcript_id "RvY_14549.1"; Scaffold010 rebuild transcript 1380943 1386452 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; gene_name "MSH6"; annotation "putative DNA mismatch repair protein Msh6"; Pfam "[MutS_I] MutS domain I|[MutS_III] MutS domain III|[MutS_V] MutS domain V|[MutS_IV] MutS family domain IV"; CDD "Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]"; KO "K08737"; similar_genes "MSH6_MOUSE(e-value:7.1e-50;bit-score:195.0)"; Scaffold010 rebuild exon 1380943 1381378 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1381454 1381584 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1381671 1381863 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1381925 1382009 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1382067 1382217 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1382296 1382370 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1382448 1382577 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1382642 1382784 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1382871 1382948 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1383011 1383082 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1383192 1383463 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1383539 1383647 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1383768 1383873 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1383964 1384138 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1384210 1384386 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1384458 1384554 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1384628 1384783 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1384866 1385092 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1385152 1385380 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1385446 1385556 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1385629 1385716 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1385780 1385968 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1386033 1386088 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1386166 1386300 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild exon 1386378 1386452 . + . gene_id "RvY_14550"; transcript_id "RvY_14550.1"; Scaffold010 rebuild transcript 1386861 1388771 . - . gene_id "RvY_14551"; transcript_id "RvY_14551.1"; gene_name "UNC4"; annotation "putative Homeobox protein unc-4 homolog"; Pfam "[Homeobox]"; KO "K09328"; similar_genes "UNC4_DANRE(e-value:2.3e-46;bit-score:183.0)"; Scaffold010 rebuild exon 1386861 1387304 . - . gene_id "RvY_14551"; transcript_id "RvY_14551.1"; Scaffold010 rebuild exon 1388213 1388367 . - . gene_id "RvY_14551"; transcript_id "RvY_14551.1"; Scaffold010 rebuild exon 1388435 1388771 . - . gene_id "RvY_14551"; transcript_id "RvY_14551.1"; Scaffold010 rebuild transcript 1393481 1394383 . - . gene_id "RvY_14552"; transcript_id "RvY_14552.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1393481 1393630 . - . gene_id "RvY_14552"; transcript_id "RvY_14552.1"; Scaffold010 rebuild exon 1393696 1393818 . - . gene_id "RvY_14552"; transcript_id "RvY_14552.1"; Scaffold010 rebuild exon 1393914 1394033 . - . gene_id "RvY_14552"; transcript_id "RvY_14552.1"; Scaffold010 rebuild exon 1394105 1394383 . - . gene_id "RvY_14552"; transcript_id "RvY_14552.1"; Scaffold010 rebuild transcript 1395291 1395871 . - . gene_id "RvY_14553"; transcript_id "RvY_14553.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1395291 1395437 . - . gene_id "RvY_14553"; transcript_id "RvY_14553.1"; Scaffold010 rebuild exon 1395549 1395755 . - . gene_id "RvY_14553"; transcript_id "RvY_14553.1"; Scaffold010 rebuild exon 1395821 1395871 . - . gene_id "RvY_14553"; transcript_id "RvY_14553.1"; Scaffold010 rebuild transcript 1396570 1398491 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; gene_name "Tdh"; annotation "putative Zinc-type alcohol dehydrogenase-like protein C1198.01"; Pfam "[ADH_N] Alcohol dehydrogenase GroES-like domain|[ADH_zinc_N] Zinc-binding dehydrogenase|[ADH_N_assoc] Alcohol dehydrogenase GroES-associated"; CDD "Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]"; EC "EC1.-.-.-"; similar_genes "YHG1_SCHPO(e-value:6.0e-28;bit-score:122.0)"; Scaffold010 rebuild exon 1396570 1396675 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1396756 1396805 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1396914 1397014 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1397101 1397481 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1397597 1397767 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1397873 1398020 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1398111 1398250 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild exon 1398341 1398491 . - . gene_id "RvY_14554"; transcript_id "RvY_14554.1"; Scaffold010 rebuild transcript 1398675 1399066 . + . gene_id "RvY_14555"; transcript_id "RvY_14555.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1398675 1398683 . + . gene_id "RvY_14555"; transcript_id "RvY_14555.1"; Scaffold010 rebuild exon 1398824 1399066 . + . gene_id "RvY_14555"; transcript_id "RvY_14555.1"; Scaffold010 rebuild transcript 1399179 1402121 . + . gene_id "RvY_14556"; transcript_id "RvY_14556.1"; gene_name "MCM10"; annotation "minichromosome maintenance protein 10"; Pfam "[zf-primase] Primase zinc finger|[Mcm10] Mcm10 replication factor"; KO "K10736"; Scaffold010 rebuild exon 1399179 1399940 . + . gene_id "RvY_14556"; transcript_id "RvY_14556.1"; Scaffold010 rebuild exon 1400074 1400538 . + . gene_id "RvY_14556"; transcript_id "RvY_14556.1"; Scaffold010 rebuild exon 1400702 1401784 . + . gene_id "RvY_14556"; transcript_id "RvY_14556.1"; Scaffold010 rebuild exon 1401843 1402121 . + . gene_id "RvY_14556"; transcript_id "RvY_14556.1"; Scaffold010 rebuild transcript 1402404 1410589 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1402404 1404035 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1404140 1404251 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1404328 1404403 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1404567 1404612 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1404690 1404749 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1404825 1404910 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1405221 1406107 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1406169 1406571 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1406724 1406865 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1406955 1406984 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1407310 1407430 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1409254 1409419 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1409664 1410270 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild exon 1410395 1410589 . - . gene_id "RvY_14557"; transcript_id "RvY_14557.1"; Scaffold010 rebuild transcript 1412537 1413918 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; gene_name "DNALI"; annotation "putative 33 kDa inner dynein arm light chain, axonemal"; Pfam "[Ax_dynein_light] Axonemal dynein light chain"; KO "K10410"; similar_genes "IDLC_STRPU(e-value:1.7e-36;bit-score:150.0)"; Scaffold010 rebuild exon 1412537 1412734 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; Scaffold010 rebuild exon 1412826 1412990 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; Scaffold010 rebuild exon 1413064 1413242 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; Scaffold010 rebuild exon 1413322 1413491 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; Scaffold010 rebuild exon 1413572 1413729 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; Scaffold010 rebuild exon 1413817 1413918 . - . gene_id "RvY_14558"; transcript_id "RvY_14558.1"; Scaffold010 rebuild transcript 1414188 1422361 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; gene_name "HrpA"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[TUDOR] Tudor domain|[DEAD] DEAD/DEAH box helicase|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; Scaffold010 rebuild exon 1414188 1414341 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1414570 1414794 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1414862 1414995 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1415065 1415221 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1415299 1415514 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1415578 1415651 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1415731 1415964 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1416218 1416439 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1416529 1416657 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1416741 1416839 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1416954 1417059 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1417136 1417339 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1417596 1417711 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1417833 1417940 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1418023 1418139 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1418212 1418438 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1418505 1418667 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1418744 1418884 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1418959 1419158 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1419244 1419395 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1419467 1419524 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1419654 1419739 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1420344 1420444 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1420526 1420765 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1420847 1420969 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1421046 1421285 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1421368 1421592 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1421670 1421763 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1421841 1421992 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild exon 1422110 1422361 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.1"; Scaffold010 rebuild transcript 1414188 1422361 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; gene_name "HrpA"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[TUDOR] Tudor domain|[DEAD] DEAD/DEAH box helicase|[HA2] Helicase associated domain (HA2)"; CDD "HrpA-like helicases [DNA replication, recombination, and repair]"; Scaffold010 rebuild exon 1414188 1414341 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1414570 1414794 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1414862 1414995 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1415065 1415221 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1415299 1415514 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1415578 1415651 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1415731 1415964 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1416218 1416439 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1416529 1416657 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1416741 1416839 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1416954 1417059 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1417136 1417339 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1417596 1417711 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1417833 1417940 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1418023 1418139 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1418212 1418438 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1418505 1418667 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1418744 1418884 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1418959 1419158 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1419244 1419395 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1419467 1419524 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1419654 1419733 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1420344 1420444 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1420526 1420765 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1420847 1420969 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1421046 1421285 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1421368 1421592 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1421670 1421763 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1421841 1421992 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild exon 1422110 1422361 . - . gene_id "RvY_14559"; transcript_id "RvY_14559.2"; Scaffold010 rebuild transcript 1423201 1425205 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.1"; gene_name "EF2"; annotation "hypothetical protein."; Pfam "[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity."; similar_genes "(1)EF2_DROME(e-value:5.5e-18;bit-score:89.0)(2)EF2_CALJA(e-value:1.3e-08;bit-score:58.0)"; Scaffold010 rebuild exon 1423201 1423344 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.1"; Scaffold010 rebuild exon 1424851 1425034 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.1"; Scaffold010 rebuild exon 1425123 1425205 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.1"; Scaffold010 rebuild transcript 1422961 1424894 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.2"; gene_name "EF2"; annotation "hypothetical protein."; Pfam "[GTP_EFTU] Elongation factor Tu GTP binding domain"; CDD "EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity."; similar_genes "(1)EF2_DROME(e-value:5.5e-18;bit-score:89.0)(2)EF2_CALJA(e-value:1.3e-08;bit-score:58.0)"; Scaffold010 rebuild exon 1422961 1423061 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.2"; Scaffold010 rebuild exon 1423121 1423344 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.2"; Scaffold010 rebuild exon 1424851 1424894 . + . gene_id "RvY_14560"; transcript_id "RvY_14560.2"; Scaffold010 rebuild transcript 1426701 1427036 . + . gene_id "RvY_14562"; transcript_id "RvY_14562.1"; gene_name "BAF"; annotation "hypothetical protein."; Pfam "[BAF] Barrier to autointegration factor"; CDD "Barrier to autointegration factor. The BAF protein has a SAM-domain-like bundle of orthogonally packed alpha-hairpins - one classic and one pseudo helix-hairpin-helix motif. The protein is involved in the prevention of retroviral DNA integration."; similar_genes "BAF_RAT(e-value:7.2e-16;bit-score:82.0)"; Scaffold010 rebuild exon 1426701 1426826 . + . gene_id "RvY_14562"; transcript_id "RvY_14562.1"; Scaffold010 rebuild exon 1426890 1427036 . + . gene_id "RvY_14562"; transcript_id "RvY_14562.1"; Scaffold010 rebuild transcript 1426707 1427036 . + . gene_id "RvY_14562"; transcript_id "RvY_14562.2"; gene_name "BAF"; annotation "hypothetical protein."; Pfam "[BAF] Barrier to autointegration factor"; CDD "Barrier to autointegration factor. The BAF protein has a SAM-domain-like bundle of orthogonally packed alpha-hairpins - one classic and one pseudo helix-hairpin-helix motif. The protein is involved in the prevention of retroviral DNA integration."; similar_genes "BAF_RAT(e-value:7.2e-16;bit-score:82.0)"; Scaffold010 rebuild exon 1426707 1426826 . + . gene_id "RvY_14562"; transcript_id "RvY_14562.2"; Scaffold010 rebuild exon 1426890 1427036 . + . gene_id "RvY_14562"; transcript_id "RvY_14562.2"; Scaffold010 rebuild transcript 1427575 1428599 . - . gene_id "RvY_14563"; transcript_id "RvY_14563.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1427575 1428251 . - . gene_id "RvY_14563"; transcript_id "RvY_14563.1"; Scaffold010 rebuild exon 1428455 1428599 . - . gene_id "RvY_14563"; transcript_id "RvY_14563.1"; Scaffold010 rebuild transcript 1428926 1430355 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; gene_name "TPR"; annotation "putative Tetratricopeptide repeat protein 35"; Pfam "[TPR_11] TPR repeat|[TPR_14] Tetratricopeptide repeat"; CDD "Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here"; similar_genes "TTC35_DANRE(e-value:1.5e-26;bit-score:117.0)"; Scaffold010 rebuild exon 1428926 1428938 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1429034 1429147 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1429245 1429395 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1429463 1429520 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1429641 1429726 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1429805 1430057 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1430118 1430222 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild exon 1430284 1430355 . + . gene_id "RvY_14564"; transcript_id "RvY_14564.1"; Scaffold010 rebuild transcript 1430397 1432696 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; gene_name "COG1041"; annotation "hypothetical protein."; Pfam "[Methyltransf_26] Methyltransferase domain|[UPF0020] Putative RNA methylase family UPF0020"; CDD "Predicted DNA modification methylase [DNA replication, recombination, and repair]"; EC "EC2.1.1.-"; KO "K15430"; similar_genes "TRM11_XENLA(e-value:1.7e-19;bit-score:94.0)"; Scaffold010 rebuild exon 1430397 1430564 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1430645 1430894 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1430962 1431034 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1431125 1431289 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1431358 1431595 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1431657 1431791 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1431846 1431938 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1432026 1432107 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1432192 1432265 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1432330 1432395 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild exon 1432469 1432696 . - . gene_id "RvY_14565"; transcript_id "RvY_14565.1"; Scaffold010 rebuild transcript 1432691 1433440 . + . gene_id "RvY_14566"; transcript_id "RvY_14566.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1432691 1432762 . + . gene_id "RvY_14566"; transcript_id "RvY_14566.1"; Scaffold010 rebuild exon 1433384 1433440 . + . gene_id "RvY_14566"; transcript_id "RvY_14566.1"; Scaffold010 rebuild transcript 1433738 1447228 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; annotation "Protein furry"; Pfam "[MOR2-PAG1_N] Cell morphogenesis N-terminal|[MOR2-PAG1_C] Cell morphogenesis C-terminal|[MOR2-PAG1_mid] Cell morphogenesis central region"; similar_genes "FRY_DROME(e-value:1.7e-161;bit-score:566.0)"; Scaffold010 rebuild exon 1433738 1433822 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1436083 1436457 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1436536 1436705 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1436845 1437162 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1437247 1437326 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1437402 1437485 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1437676 1437799 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1437874 1438110 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1438269 1438426 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1438723 1438879 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1438955 1439340 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1439413 1439553 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1439758 1440041 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1440250 1440666 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1440841 1441291 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1441458 1441923 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1442010 1442243 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1442330 1442417 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1442548 1442984 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1443050 1443530 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1443596 1444045 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1444284 1444907 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1444973 1445298 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1445373 1445567 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1445658 1445825 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1445903 1446221 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1446288 1446538 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1446617 1447098 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild exon 1447171 1447228 . + . gene_id "RvY_14567"; transcript_id "RvY_14567.1"; Scaffold010 rebuild transcript 1449278 1450731 . + . gene_id "RvY_14568"; transcript_id "RvY_14568.1"; product "histoneH1_1"; gene_name "H1_5"; annotation "histoneH1_1 | histone H1/5"; Pfam "[Linker_histone] linker histone H1 and H5 family"; CDD "linker histone H1 and H5 family. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types."; KO "K11275"; similar_genes "H1D_STRPU(e-value:8.7e-06;bit-score:48.0)"; Scaffold010 rebuild exon 1449278 1449628 . + . gene_id "RvY_14568"; transcript_id "RvY_14568.1"; Scaffold010 rebuild exon 1449713 1449727 . + . gene_id "RvY_14568"; transcript_id "RvY_14568.1"; Scaffold010 rebuild exon 1449895 1450731 . + . gene_id "RvY_14568"; transcript_id "RvY_14568.1"; Scaffold010 rebuild transcript 1451904 1452349 . + . gene_id "RvY_14569"; transcript_id "RvY_14569.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1451904 1451975 . + . gene_id "RvY_14569"; transcript_id "RvY_14569.1"; Scaffold010 rebuild exon 1452227 1452349 . + . gene_id "RvY_14569"; transcript_id "RvY_14569.1"; Scaffold010 rebuild transcript 1453445 1455047 . + . gene_id "RvY_14570"; transcript_id "RvY_14570.1"; annotation "putative Phosphatidylinositol 4-kinase type 2-alpha"; Pfam "[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase"; EC "EC2.7.1.67"; KO "K13711"; similar_genes "P4K2A_DANRE(e-value:3.1e-48;bit-score:189.0)"; Scaffold010 rebuild exon 1453445 1453811 . + . gene_id "RvY_14570"; transcript_id "RvY_14570.1"; Scaffold010 rebuild exon 1453966 1455047 . + . gene_id "RvY_14570"; transcript_id "RvY_14570.1"; Scaffold010 rebuild transcript 1455892 1457378 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; gene_name "PSMF1"; annotation "proteasome inhibitor subunit 1 (PI31)"; Pfam "[PI31_Prot_N] PI31 proteasome regulator N-terminal"; KO "K06700"; Scaffold010 rebuild exon 1455892 1456053 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild exon 1456240 1456422 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild exon 1456497 1456579 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild exon 1456645 1456866 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild exon 1456936 1457025 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild exon 1457094 1457243 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild exon 1457312 1457378 . + . gene_id "RvY_14571"; transcript_id "RvY_14571.1"; Scaffold010 rebuild transcript 1458414 1461306 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; gene_name "SDHA"; annotation "Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial"; Pfam "[FAD_binding_2] FAD binding domain|[Succ_DH_flav_C] Fumarate reductase flavoprotein C-term"; CDD "succinate dehydrogenase (flavoprotein) subunit; Provisional"; EC "EC1.3.5.1"; KO "K00234"; similar_genes "DHSAB_XENLA(e-value:3.0e-201;bit-score:698.0)"; Scaffold010 rebuild exon 1458414 1458440 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1458572 1458679 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1458744 1458905 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1459035 1459178 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1459257 1459421 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1459504 1459652 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1459719 1459843 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1459916 1460084 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1460178 1460577 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1460636 1460827 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1460895 1461038 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild exon 1461106 1461306 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.1"; Scaffold010 rebuild transcript 1458455 1461306 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; gene_name "SDHA"; annotation "Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial"; Pfam "[FAD_binding_2] FAD binding domain|[Succ_DH_flav_C] Fumarate reductase flavoprotein C-term"; CDD "succinate dehydrogenase (flavoprotein) subunit; Provisional"; EC "EC1.3.5.1"; KO "K00234"; similar_genes "DHSAB_XENLA(e-value:3.0e-201;bit-score:698.0)"; Scaffold010 rebuild exon 1458455 1458457 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1458572 1458679 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1458744 1458905 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1459035 1459178 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1459257 1459421 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1459504 1459652 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1459719 1459843 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1459916 1460084 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1460178 1460577 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1460636 1460827 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1460895 1461038 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild exon 1461106 1461306 . + . gene_id "RvY_14572"; transcript_id "RvY_14572.2"; Scaffold010 rebuild transcript 1461647 1465860 . + . gene_id "RvY_14573"; transcript_id "RvY_14573.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1461647 1461654 . + . gene_id "RvY_14573"; transcript_id "RvY_14573.1"; Scaffold010 rebuild exon 1461883 1462079 . + . gene_id "RvY_14573"; transcript_id "RvY_14573.1"; Scaffold010 rebuild exon 1465566 1465718 . + . gene_id "RvY_14573"; transcript_id "RvY_14573.1"; Scaffold010 rebuild exon 1465838 1465860 . + . gene_id "RvY_14573"; transcript_id "RvY_14573.1"; Scaffold010 rebuild transcript 1466187 1467152 . + . gene_id "RvY_14574"; transcript_id "RvY_14574.1"; gene_name "K01104"; annotation "protein-tyrosine phosphatase [EC:3.1.3.48]"; Pfam "[Y_phosphatase] Protein-tyrosine phosphatase"; CDD "protein tyrosine phosphatase; Provisional"; EC "EC3.1.3.48"; KO "K01104"; similar_genes "TP4A3_BOVIN(e-value:3.8e-21;bit-score:99.0)"; Scaffold010 rebuild exon 1466187 1466291 . + . gene_id "RvY_14574"; transcript_id "RvY_14574.1"; Scaffold010 rebuild exon 1466380 1466472 . + . gene_id "RvY_14574"; transcript_id "RvY_14574.1"; Scaffold010 rebuild exon 1466547 1466677 . + . gene_id "RvY_14574"; transcript_id "RvY_14574.1"; Scaffold010 rebuild exon 1466798 1466872 . + . gene_id "RvY_14574"; transcript_id "RvY_14574.1"; Scaffold010 rebuild exon 1467038 1467152 . + . gene_id "RvY_14574"; transcript_id "RvY_14574.1"; Scaffold010 rebuild transcript 1467189 1467740 . + . gene_id "RvY_14575"; transcript_id "RvY_14575.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1467189 1467740 . + . gene_id "RvY_14575"; transcript_id "RvY_14575.1"; Scaffold010 rebuild transcript 1468782 1471088 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.1"; annotation "hypothetical protein."; Pfam "[K_tetra] K+ channel tetramerisation domain"; Scaffold010 rebuild exon 1468782 1468839 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.1"; Scaffold010 rebuild exon 1469920 1470104 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.1"; Scaffold010 rebuild exon 1470179 1470439 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.1"; Scaffold010 rebuild exon 1470650 1470671 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.1"; Scaffold010 rebuild exon 1470928 1471088 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.1"; Scaffold010 rebuild transcript 1469825 1471088 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.2"; annotation "hypothetical protein."; Pfam "[K_tetra] K+ channel tetramerisation domain"; Scaffold010 rebuild exon 1469825 1469846 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.2"; Scaffold010 rebuild exon 1469920 1470104 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.2"; Scaffold010 rebuild exon 1470179 1470439 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.2"; Scaffold010 rebuild exon 1470650 1470671 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.2"; Scaffold010 rebuild exon 1470928 1471088 . + . gene_id "RvY_14576"; transcript_id "RvY_14576.2"; Scaffold010 rebuild transcript 1471248 1472259 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.1"; annotation "hypothetical protein."; Pfam "[Ion_trans] Ion transport protein"; Scaffold010 rebuild exon 1471248 1471283 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.1"; Scaffold010 rebuild exon 1471499 1471746 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.1"; Scaffold010 rebuild exon 1471812 1471999 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.1"; Scaffold010 rebuild exon 1472079 1472163 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.1"; Scaffold010 rebuild exon 1472241 1472259 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.1"; Scaffold010 rebuild transcript 1471248 1472167 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.2"; annotation "hypothetical protein."; Pfam "[Ion_trans] Ion transport protein"; Scaffold010 rebuild exon 1471248 1471283 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.2"; Scaffold010 rebuild exon 1471499 1471746 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.2"; Scaffold010 rebuild exon 1471812 1471999 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.2"; Scaffold010 rebuild exon 1472079 1472167 . + . gene_id "RvY_14577"; transcript_id "RvY_14577.2"; Scaffold010 rebuild transcript 1472402 1474979 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; annotation "hypothetical protein."; Pfam "[Ion_trans_2] Ion channel|[K_tetra] K+ channel tetramerisation domain|[Ion_trans] Ion transport protein"; Scaffold010 rebuild exon 1472402 1472412 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild exon 1472483 1472930 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild exon 1473167 1473511 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild exon 1473771 1474225 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild exon 1474311 1474374 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild exon 1474442 1474554 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild exon 1474631 1474979 . + . gene_id "RvY_14578"; transcript_id "RvY_14578.1"; Scaffold010 rebuild transcript 1475007 1475774 . - . gene_id "RvY_14579"; transcript_id "RvY_14579.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1475007 1475282 . - . gene_id "RvY_14579"; transcript_id "RvY_14579.1"; Scaffold010 rebuild exon 1475348 1475545 . - . gene_id "RvY_14579"; transcript_id "RvY_14579.1"; Scaffold010 rebuild exon 1475676 1475774 . - . gene_id "RvY_14579"; transcript_id "RvY_14579.1"; Scaffold010 rebuild transcript 1476166 1476657 . + . gene_id "RvY_14580"; transcript_id "RvY_14580.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1476166 1476219 . + . gene_id "RvY_14580"; transcript_id "RvY_14580.1"; Scaffold010 rebuild exon 1476364 1476558 . + . gene_id "RvY_14580"; transcript_id "RvY_14580.1"; Scaffold010 rebuild exon 1476622 1476657 . + . gene_id "RvY_14580"; transcript_id "RvY_14580.1"; Scaffold010 rebuild transcript 1477650 1488357 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; gene_name "(1,2)IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|(1,3)[Ig_2] Immunoglobulin domain|(1)[ig] Immunoglobulin domain|(1,2)[V-set] Immunoglobulin V-set domain|(1)[Ig_3] Immunoglobulin domain"; CDD "(1,2)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold010 rebuild exon 1477650 1477774 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; Scaffold010 rebuild exon 1477990 1478292 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; Scaffold010 rebuild exon 1479891 1479970 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; Scaffold010 rebuild exon 1480057 1480193 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; Scaffold010 rebuild exon 1480441 1480631 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; Scaffold010 rebuild exon 1488243 1488357 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.1"; Scaffold010 rebuild transcript 1479871 1488357 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.2"; gene_name "(1,2)IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|(1,3)[Ig_2] Immunoglobulin domain|(1)[ig] Immunoglobulin domain|(1,2)[V-set] Immunoglobulin V-set domain|(1)[Ig_3] Immunoglobulin domain"; CDD "(1,2)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold010 rebuild exon 1479871 1479970 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.2"; Scaffold010 rebuild exon 1480057 1480193 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.2"; Scaffold010 rebuild exon 1480441 1480631 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.2"; Scaffold010 rebuild exon 1488243 1488357 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.2"; Scaffold010 rebuild transcript 1477650 1479921 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.3"; gene_name "(1,2)IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|(1,3)[Ig_2] Immunoglobulin domain|(1)[ig] Immunoglobulin domain|(1,2)[V-set] Immunoglobulin V-set domain|(1)[Ig_3] Immunoglobulin domain"; CDD "(1,2)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold010 rebuild exon 1477650 1477774 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.3"; Scaffold010 rebuild exon 1477990 1478292 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.3"; Scaffold010 rebuild exon 1478485 1478550 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.3"; Scaffold010 rebuild exon 1479891 1479921 . - . gene_id "RvY_14581"; transcript_id "RvY_14581.3"; Scaffold010 rebuild transcript 1477721 1478137 . + . gene_id "RvY_14582"; transcript_id "RvY_14582.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1477721 1477742 . + . gene_id "RvY_14582"; transcript_id "RvY_14582.1"; Scaffold010 rebuild exon 1478043 1478137 . + . gene_id "RvY_14582"; transcript_id "RvY_14582.1"; Scaffold010 rebuild transcript 1482931 1483377 . + . gene_id "RvY_14583"; transcript_id "RvY_14583.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1482931 1483377 . + . gene_id "RvY_14583"; transcript_id "RvY_14583.1"; Scaffold010 rebuild transcript 1492058 1492327 . - . gene_id "RvY_14584"; transcript_id "RvY_14584.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1492058 1492153 . - . gene_id "RvY_14584"; transcript_id "RvY_14584.1"; Scaffold010 rebuild exon 1492220 1492327 . - . gene_id "RvY_14584"; transcript_id "RvY_14584.1"; Scaffold010 rebuild transcript 1492733 1494596 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1492733 1492920 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; Scaffold010 rebuild exon 1492987 1493194 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; Scaffold010 rebuild exon 1493254 1493469 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; Scaffold010 rebuild exon 1493532 1493825 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; Scaffold010 rebuild exon 1493903 1493996 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; Scaffold010 rebuild exon 1494205 1494596 . + . gene_id "RvY_14585"; transcript_id "RvY_14585.1"; Scaffold010 rebuild transcript 1495281 1498074 . - . gene_id "RvY_14586"; transcript_id "RvY_14586.1"; annotation "Calcium-binding mitochondrial carrier protein Aralar1"; Pfam "[efhand] EF hand|[EF_hand_3] EF hand|[Mito_carr] Mitochondrial carrier protein|[EF_hand_6] EF-hand domain pair|[EF_hand_5] EF-hand domain pair|[EF_hand_4] EF-hand domain"; KO "K15105"; similar_genes "CMC_DROME(e-value:2.9e-108;bit-score:389.0)"; Scaffold010 rebuild exon 1495281 1495723 . - . gene_id "RvY_14586"; transcript_id "RvY_14586.1"; Scaffold010 rebuild exon 1495895 1496307 . - . gene_id "RvY_14586"; transcript_id "RvY_14586.1"; Scaffold010 rebuild exon 1496504 1497362 . - . gene_id "RvY_14586"; transcript_id "RvY_14586.1"; Scaffold010 rebuild exon 1497663 1498074 . - . gene_id "RvY_14586"; transcript_id "RvY_14586.1"; Scaffold010 rebuild transcript 1498535 1499648 . + . gene_id "RvY_14587"; transcript_id "RvY_14587.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold010 rebuild exon 1498535 1498782 . + . gene_id "RvY_14587"; transcript_id "RvY_14587.1"; Scaffold010 rebuild exon 1498847 1499437 . + . gene_id "RvY_14587"; transcript_id "RvY_14587.1"; Scaffold010 rebuild exon 1499510 1499648 . + . gene_id "RvY_14587"; transcript_id "RvY_14587.1"; Scaffold010 rebuild transcript 1500324 1503815 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; gene_name "CYCc"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region|[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Guanylate_cyc] Adenylate and Guanylate cyclase catalytic domain"; CDD "Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes."; EC "EC4.6.1.2"; similar_genes "GCY3E_DROME(e-value:1.4e-10;bit-score:64.0)"; Scaffold010 rebuild exon 1500324 1500526 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1500614 1500761 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1500868 1501087 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1501153 1501305 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1501382 1501565 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1501633 1502044 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1502112 1502350 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1502475 1502753 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1502840 1502975 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1503070 1503164 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1503241 1503585 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild exon 1503662 1503815 . - . gene_id "RvY_14588"; transcript_id "RvY_14588.1"; Scaffold010 rebuild transcript 1503895 1504766 . - . gene_id "RvY_14589"; transcript_id "RvY_14589.1"; annotation "hypothetical protein."; Pfam "[ANF_receptor] Receptor family ligand binding region"; Scaffold010 rebuild exon 1503895 1504111 . - . gene_id "RvY_14589"; transcript_id "RvY_14589.1"; Scaffold010 rebuild exon 1504180 1504766 . - . gene_id "RvY_14589"; transcript_id "RvY_14589.1"; Scaffold010 rebuild transcript 1504946 1506655 . - . gene_id "RvY_14590"; transcript_id "RvY_14590.1"; gene_name "gatB"; annotation "putative Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B"; Pfam "[GatB_Yqey] GatB domain|[GatB_N] GatB/GatE catalytic domain"; CDD "aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated"; EC "EC6.3.5.-|EC6.3.5.6|EC6.3.5.7"; KO "K02434"; similar_genes "GATB_ACICJ(e-value:1.3e-38;bit-score:157.0)"; Scaffold010 rebuild exon 1504946 1506307 . - . gene_id "RvY_14590"; transcript_id "RvY_14590.1"; Scaffold010 rebuild exon 1506377 1506655 . - . gene_id "RvY_14590"; transcript_id "RvY_14590.1"; Scaffold010 rebuild transcript 1507283 1509011 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; gene_name "ndk"; annotation "nucleoside-diphosphate kinase [EC:2.7.4.6]"; Pfam "[NDK] Nucleoside diphosphate kinase"; CDD "Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner."; EC "EC2.7.4.6"; KO "K00940"; similar_genes "NDK7_BOVIN(e-value:1.3e-08;bit-score:58.0)"; Scaffold010 rebuild exon 1507283 1507291 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1507346 1507450 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1507533 1507699 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1507852 1508022 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1508096 1508325 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1508406 1508539 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1508598 1508768 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild exon 1508850 1509011 . + . gene_id "RvY_14591"; transcript_id "RvY_14591.1"; Scaffold010 rebuild transcript 1509309 1511869 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; gene_name "ALDH_F8_HMSADH"; annotation "Aldehyde dehydrogenase family 8 member A1"; Pfam "[Aldedh] Aldehyde dehydrogenase family"; CDD "Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone."; EC "EC1.2.1.-"; similar_genes "AL8A1_MOUSE(e-value:1.9e-88;bit-score:323.0)"; Scaffold010 rebuild exon 1509309 1509421 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1509493 1509695 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1509768 1509811 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1509892 1510063 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1510144 1510319 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1510379 1510521 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1510579 1510602 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1510668 1510745 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1510889 1510947 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1511087 1511161 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1511238 1511438 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1511508 1511606 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild exon 1511784 1511869 . - . gene_id "RvY_14592"; transcript_id "RvY_14592.1"; Scaffold010 rebuild transcript 1512665 1513500 . - . gene_id "RvY_14593"; transcript_id "RvY_14593.1"; annotation "hypothetical protein."; Pfam "[DUF2807]"; Scaffold010 rebuild exon 1512665 1512865 . - . gene_id "RvY_14593"; transcript_id "RvY_14593.1"; Scaffold010 rebuild exon 1512949 1513500 . - . gene_id "RvY_14593"; transcript_id "RvY_14593.1"; Scaffold010 rebuild transcript 1514520 1515692 . + . gene_id "RvY_14594"; transcript_id "RvY_14594.1"; annotation "hypothetical protein."; Pfam "[LRAT] Lecithin retinol acyltransferase"; Scaffold010 rebuild exon 1514520 1514807 . + . gene_id "RvY_14594"; transcript_id "RvY_14594.1"; Scaffold010 rebuild exon 1514910 1515068 . + . gene_id "RvY_14594"; transcript_id "RvY_14594.1"; Scaffold010 rebuild exon 1515338 1515490 . + . gene_id "RvY_14594"; transcript_id "RvY_14594.1"; Scaffold010 rebuild exon 1515585 1515692 . + . gene_id "RvY_14594"; transcript_id "RvY_14594.1"; Scaffold010 rebuild transcript 1516238 1518763 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; gene_name "COG1340"; annotation "hypothetical protein."; CDD "Uncharacterized archaeal coiled-coil protein [Function unknown]"; Scaffold010 rebuild exon 1516238 1516900 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1516970 1517086 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1517154 1517439 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1517517 1517764 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1517840 1517912 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1517977 1518149 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1518215 1518355 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1518439 1518530 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild exon 1518628 1518763 . - . gene_id "RvY_14595"; transcript_id "RvY_14595.1"; Scaffold010 rebuild transcript 1519906 1522483 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; gene_name "SCC1"; annotation "cohesin complex subunit SCC1"; Pfam "[Rad21_Rec8_N] N terminus of Rad21 / Rec8 like protein|[Rad21_Rec8] Conserved region of Rad21 / Rec8 like protein"; KO "K06670"; similar_genes "RAD21_HUMAN(e-value:3.2e-18;bit-score:90.0)"; Scaffold010 rebuild exon 1519906 1520052 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1520110 1520375 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1520443 1520570 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1520638 1520796 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1520875 1520961 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1521074 1521516 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1521592 1521709 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1521795 1522099 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild exon 1522193 1522483 . + . gene_id "RvY_14596"; transcript_id "RvY_14596.1"; Scaffold010 rebuild transcript 1523111 1524787 . - . gene_id "RvY_14597"; transcript_id "RvY_14597.1"; gene_name "TUBG"; annotation "Tubulin gamma-1 chain"; Pfam "[Tubulin] Tubulin/FtsZ family, GTPase domain|[Misat_Myo_SegII] Misato Segment II myosin-like domain|[Tubulin_C] Tubulin C-terminal domain"; CDD "Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping."; KO "K10389"; similar_genes "TBG1_HUMAN(e-value:8.1e-102;bit-score:367.0)"; Scaffold010 rebuild exon 1523111 1523497 . - . gene_id "RvY_14597"; transcript_id "RvY_14597.1"; Scaffold010 rebuild exon 1523566 1523750 . - . gene_id "RvY_14597"; transcript_id "RvY_14597.1"; Scaffold010 rebuild exon 1523865 1524333 . - . gene_id "RvY_14597"; transcript_id "RvY_14597.1"; Scaffold010 rebuild exon 1524431 1524787 . - . gene_id "RvY_14597"; transcript_id "RvY_14597.1"; Scaffold010 rebuild transcript 1525202 1525846 . - . gene_id "RvY_14598"; transcript_id "RvY_14598.1"; annotation "hypothetical protein."; Pfam "[Dimer_Tnp_hAT] hAT family dimerisation domain"; Scaffold010 rebuild exon 1525202 1525476 . - . gene_id "RvY_14598"; transcript_id "RvY_14598.1"; Scaffold010 rebuild exon 1525555 1525846 . - . gene_id "RvY_14598"; transcript_id "RvY_14598.1"; Scaffold010 rebuild transcript 1526665 1527354 . - . gene_id "RvY_14599"; transcript_id "RvY_14599.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1526665 1526850 . - . gene_id "RvY_14599"; transcript_id "RvY_14599.1"; Scaffold010 rebuild exon 1527130 1527354 . - . gene_id "RvY_14599"; transcript_id "RvY_14599.1"; Scaffold010 rebuild transcript 1527773 1528144 . - . gene_id "RvY_14600"; transcript_id "RvY_14600.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1527773 1528144 . - . gene_id "RvY_14600"; transcript_id "RvY_14600.1"; Scaffold010 rebuild transcript 1528953 1529318 . + . gene_id "RvY_14601"; transcript_id "RvY_14601.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1528953 1529318 . + . gene_id "RvY_14601"; transcript_id "RvY_14601.1"; Scaffold010 rebuild transcript 1529774 1530959 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; gene_name "PRDX"; annotation "Thioredoxin-dependent peroxide reductase, mitochondrial"; Pfam "[AhpC-TSA] AhpC/TSA family|[1-cysPrx_C] C-terminal domain of 1-Cys peroxiredoxin|[Redoxin]"; CDD "Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the Scaffold010 rebuild exon 1529774 1529993 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild exon 1530051 1530173 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild exon 1530259 1530368 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild exon 1530477 1530546 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild exon 1530611 1530668 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild exon 1530769 1530882 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild exon 1530938 1530959 . - . gene_id "RvY_14602"; transcript_id "RvY_14602.1"; Scaffold010 rebuild transcript 1533523 1533987 . + . gene_id "RvY_14603"; transcript_id "RvY_14603.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1533523 1533531 . + . gene_id "RvY_14603"; transcript_id "RvY_14603.1"; Scaffold010 rebuild exon 1533589 1533987 . + . gene_id "RvY_14603"; transcript_id "RvY_14603.1"; Scaffold010 rebuild transcript 1533959 1534619 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1533959 1534252 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.1"; Scaffold010 rebuild exon 1534330 1534479 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.1"; Scaffold010 rebuild exon 1534542 1534619 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.1"; Scaffold010 rebuild transcript 1534597 1535086 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1534597 1534739 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.2"; Scaffold010 rebuild exon 1534942 1535086 . - . gene_id "RvY_14604"; transcript_id "RvY_14604.2"; Scaffold010 rebuild transcript 1535878 1536189 . - . gene_id "RvY_14605"; transcript_id "RvY_14605.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1535878 1536189 . - . gene_id "RvY_14605"; transcript_id "RvY_14605.1"; Scaffold010 rebuild transcript 1536757 1539248 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; gene_name "GGH"; annotation "gamma-glutamyl hydrolase [EC:3.4.19.9]"; Pfam "[Peptidase_C26] Peptidase C26|[GATase] Glutamine amidotransferase class-I"; EC "EC3.4.19.9"; KO "K01307"; Scaffold010 rebuild exon 1536757 1536878 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1536942 1537079 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1537944 1538141 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1538222 1538363 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1538440 1538524 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1538603 1538653 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1538924 1539053 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild exon 1539119 1539248 . - . gene_id "RvY_14606"; transcript_id "RvY_14606.1"; Scaffold010 rebuild transcript 1540304 1542935 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1540304 1540575 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; Scaffold010 rebuild exon 1540642 1540731 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; Scaffold010 rebuild exon 1540801 1540993 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; Scaffold010 rebuild exon 1541083 1541208 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; Scaffold010 rebuild exon 1541689 1542206 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; Scaffold010 rebuild exon 1542740 1542935 . - . gene_id "RvY_14607"; transcript_id "RvY_14607.1"; Scaffold010 rebuild transcript 1544501 1546575 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1544501 1544901 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1544983 1545072 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1545172 1545342 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1545428 1545449 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1545522 1545650 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1545712 1545931 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1546101 1546395 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild exon 1546473 1546575 . - . gene_id "RvY_14608"; transcript_id "RvY_14608.1"; Scaffold010 rebuild transcript 1547080 1547842 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1547080 1547441 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.1"; Scaffold010 rebuild exon 1547552 1547665 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.1"; Scaffold010 rebuild exon 1547746 1547842 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.1"; Scaffold010 rebuild transcript 1547435 1548052 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1547435 1547441 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.2"; Scaffold010 rebuild exon 1547552 1547665 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.2"; Scaffold010 rebuild exon 1547746 1547914 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.2"; Scaffold010 rebuild exon 1547998 1548052 . - . gene_id "RvY_14609"; transcript_id "RvY_14609.2"; Scaffold010 rebuild transcript 1548111 1549378 . - . gene_id "RvY_14610"; transcript_id "RvY_14610.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1548111 1548309 . - . gene_id "RvY_14610"; transcript_id "RvY_14610.1"; Scaffold010 rebuild exon 1548400 1548495 . - . gene_id "RvY_14610"; transcript_id "RvY_14610.1"; Scaffold010 rebuild exon 1548584 1548869 . - . gene_id "RvY_14610"; transcript_id "RvY_14610.1"; Scaffold010 rebuild exon 1549016 1549083 . - . gene_id "RvY_14610"; transcript_id "RvY_14610.1"; Scaffold010 rebuild exon 1549329 1549378 . - . gene_id "RvY_14610"; transcript_id "RvY_14610.1"; Scaffold010 rebuild transcript 1551940 1553560 . + . gene_id "RvY_14611"; transcript_id "RvY_14611.1"; gene_name "FBXO9"; annotation "F-box protein 9"; KO "K10295"; similar_genes "FBX9_RAT(e-value:5.3e-12;bit-score:69.0)"; Scaffold010 rebuild exon 1551940 1552158 . + . gene_id "RvY_14611"; transcript_id "RvY_14611.1"; Scaffold010 rebuild exon 1552242 1552920 . + . gene_id "RvY_14611"; transcript_id "RvY_14611.1"; Scaffold010 rebuild exon 1552987 1553201 . + . gene_id "RvY_14611"; transcript_id "RvY_14611.1"; Scaffold010 rebuild exon 1553289 1553368 . + . gene_id "RvY_14611"; transcript_id "RvY_14611.1"; Scaffold010 rebuild exon 1553455 1553560 . + . gene_id "RvY_14611"; transcript_id "RvY_14611.1"; Scaffold010 rebuild transcript 1553868 1555418 . - . gene_id "RvY_14612"; transcript_id "RvY_14612.1"; annotation "hypothetical protein."; Pfam "[F-box]"; Scaffold010 rebuild exon 1553868 1554493 . - . gene_id "RvY_14612"; transcript_id "RvY_14612.1"; Scaffold010 rebuild exon 1554689 1555418 . - . gene_id "RvY_14612"; transcript_id "RvY_14612.1"; Scaffold010 rebuild transcript 1556539 1560181 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; gene_name "K00888"; annotation "Phosphatidylinositol 4-kinase beta"; Pfam "[PI3_PI4_kinase] Phosphatidylinositol 3- and 4-kinase"; CDD "Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KIIIbeta also functions in the genesis, transport, and exocytosis of synaptic vesicles. The Drosophila PI4KIIIbeta is essential for cytokinesis during spermatogenesis."; EC "EC2.7.1.67"; KO "K00888"; similar_genes "PI4KB_RAT(e-value:7.0e-101;bit-score:364.0)"; Scaffold010 rebuild exon 1556539 1556739 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1556814 1557264 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1557347 1557464 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1557558 1557704 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1557762 1557898 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1557991 1558166 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1558290 1558517 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1558606 1558815 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1558870 1559031 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1559104 1559286 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1559356 1559621 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1559683 1559936 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild exon 1559997 1560181 . + . gene_id "RvY_14613"; transcript_id "RvY_14613.1"; Scaffold010 rebuild transcript 1560666 1561401 . - . gene_id "RvY_14614"; transcript_id "RvY_14614.1"; gene_name "QCR7"; annotation "ubiquinol-cytochrome c reductase subunit 7 [EC:1.10.2.2]"; Pfam "[UCR_14kD] Ubiquinol-cytochrome C reductase complex 14kD subunit"; EC "EC1.10.2.2"; KO "K00417"; Scaffold010 rebuild exon 1560666 1560746 . - . gene_id "RvY_14614"; transcript_id "RvY_14614.1"; Scaffold010 rebuild exon 1560836 1561005 . - . gene_id "RvY_14614"; transcript_id "RvY_14614.1"; Scaffold010 rebuild exon 1561159 1561218 . - . gene_id "RvY_14614"; transcript_id "RvY_14614.1"; Scaffold010 rebuild exon 1561341 1561401 . - . gene_id "RvY_14614"; transcript_id "RvY_14614.1"; Scaffold010 rebuild transcript 1561757 1561954 . - . gene_id "RvY_14615"; transcript_id "RvY_14615.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1561757 1561954 . - . gene_id "RvY_14615"; transcript_id "RvY_14615.1"; Scaffold010 rebuild transcript 1562104 1564178 . + . gene_id "RvY_14616"; transcript_id "RvY_14616.1"; gene_name "SrmB"; annotation "hypothetical protein."; Pfam "[Helicase_C] Helicase conserved C-terminal domain|[DEAD] DEAD/DEAH box helicase|[ResIII] Type III restriction enzyme, res subunit"; CDD "Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]"; EC "EC3.6.1.-"; KO "K14807"; similar_genes "DDX51_DANRE(e-value:1.4e-12;bit-score:71.0)"; Scaffold010 rebuild exon 1562104 1562820 . + . gene_id "RvY_14616"; transcript_id "RvY_14616.1"; Scaffold010 rebuild exon 1563138 1564178 . + . gene_id "RvY_14616"; transcript_id "RvY_14616.1"; Scaffold010 rebuild transcript 1564788 1565219 . + . gene_id "RvY_14617"; transcript_id "RvY_14617.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1564788 1565219 . + . gene_id "RvY_14617"; transcript_id "RvY_14617.1"; Scaffold010 rebuild transcript 1565152 1565517 . + . gene_id "RvY_14617"; transcript_id "RvY_14617.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1565152 1565517 . + . gene_id "RvY_14617"; transcript_id "RvY_14617.2"; Scaffold010 rebuild transcript 1565668 1567365 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; annotation "hypothetical protein."; KO "K15288"; Scaffold010 rebuild exon 1565668 1566089 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; Scaffold010 rebuild exon 1566149 1566238 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; Scaffold010 rebuild exon 1566312 1566498 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; Scaffold010 rebuild exon 1566585 1566710 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; Scaffold010 rebuild exon 1566785 1567010 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; Scaffold010 rebuild exon 1567082 1567365 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.1"; Scaffold010 rebuild transcript 1565771 1567365 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; annotation "hypothetical protein."; KO "K15288"; Scaffold010 rebuild exon 1565771 1565807 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild exon 1565897 1566089 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild exon 1566149 1566238 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild exon 1566312 1566498 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild exon 1566585 1566710 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild exon 1566785 1567010 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild exon 1567082 1567365 . - . gene_id "RvY_14618"; transcript_id "RvY_14618.2"; Scaffold010 rebuild transcript 1568785 1569427 . + . gene_id "RvY_14619"; transcript_id "RvY_14619.1"; gene_name "APC10"; annotation "anaphase-promoting complex subunit 10"; Pfam "[APC10] Anaphase-promoting complex, subunit 10 (APC10)"; KO "K03357"; similar_genes "APC10_DICDI(e-value:8.5e-21;bit-score:98.0)"; Scaffold010 rebuild exon 1568785 1569068 . + . gene_id "RvY_14619"; transcript_id "RvY_14619.1"; Scaffold010 rebuild exon 1569130 1569427 . + . gene_id "RvY_14619"; transcript_id "RvY_14619.1"; Scaffold010 rebuild transcript 1570000 1570466 . + . gene_id "RvY_14620"; transcript_id "RvY_14620.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1570000 1570120 . + . gene_id "RvY_14620"; transcript_id "RvY_14620.1"; Scaffold010 rebuild exon 1570203 1570335 . + . gene_id "RvY_14620"; transcript_id "RvY_14620.1"; Scaffold010 rebuild exon 1570433 1570466 . + . gene_id "RvY_14620"; transcript_id "RvY_14620.1"; Scaffold010 rebuild transcript 1570761 1572902 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; gene_name "PRK08139"; annotation "putative Enoyl-CoA hydratase domain-containing protein 3, mitochondrial"; Pfam "[ECH] Enoyl-CoA hydratase/isomerase family"; CDD "enoyl-CoA hydratase; Validated"; similar_genes "ECHD3_XENLA(e-value:1.8e-48;bit-score:190.0)"; Scaffold010 rebuild exon 1570761 1570857 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild exon 1570927 1571092 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild exon 1571920 1572029 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild exon 1572099 1572209 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild exon 1572293 1572372 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild exon 1572483 1572612 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild exon 1572667 1572902 . - . gene_id "RvY_14621"; transcript_id "RvY_14621.1"; Scaffold010 rebuild transcript 1572940 1573395 . - . gene_id "RvY_14622"; transcript_id "RvY_14622.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1572940 1572944 . - . gene_id "RvY_14622"; transcript_id "RvY_14622.1"; Scaffold010 rebuild exon 1573017 1573395 . - . gene_id "RvY_14622"; transcript_id "RvY_14622.1"; Scaffold010 rebuild transcript 1573654 1574187 . + . gene_id "RvY_14623"; transcript_id "RvY_14623.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1573654 1574187 . + . gene_id "RvY_14623"; transcript_id "RvY_14623.1"; Scaffold010 rebuild transcript 1575264 1575737 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1575264 1575737 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.1"; Scaffold010 rebuild transcript 1574747 1575753 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1574747 1574776 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.2"; Scaffold010 rebuild exon 1575083 1575172 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.2"; Scaffold010 rebuild exon 1575252 1575315 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.2"; Scaffold010 rebuild exon 1575629 1575753 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.2"; Scaffold010 rebuild transcript 1575264 1575737 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.3"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1575264 1575315 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.3"; Scaffold010 rebuild exon 1575490 1575737 . + . gene_id "RvY_14624"; transcript_id "RvY_14624.3"; Scaffold010 rebuild transcript 1576296 1589540 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; annotation "hypothetical protein."; Pfam "[SEA]|[DOMON]"; Scaffold010 rebuild exon 1576296 1576374 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1576876 1577019 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1577265 1577338 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1577606 1577876 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1578105 1578203 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1578317 1578439 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1578533 1578697 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1578767 1579018 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1579098 1579295 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1579362 1579668 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1579979 1580078 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1580156 1580329 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1580404 1580494 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1580572 1580712 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1581161 1581942 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1582006 1582134 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1582193 1582439 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1582503 1583074 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1583163 1584558 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1584802 1585259 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1585332 1585974 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1586926 1587300 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1587414 1587581 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1587675 1587847 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1587930 1588275 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1588337 1588684 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1588770 1588969 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild exon 1589052 1589540 . + . gene_id "RvY_14625"; transcript_id "RvY_14625.1"; Scaffold010 rebuild transcript 1589867 1592334 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; annotation "hypothetical protein."; Pfam "[BTB] BTB/POZ domain|[BACK] BTB And C-terminal Kelch"; Scaffold010 rebuild exon 1589867 1589949 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1590025 1590149 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1590212 1590405 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1590866 1591045 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1591112 1591213 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1591311 1591554 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1591774 1591966 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild exon 1592070 1592334 . - . gene_id "RvY_14626"; transcript_id "RvY_14626.1"; Scaffold010 rebuild transcript 1597116 1597313 . - . gene_id "RvY_14627"; transcript_id "RvY_14627.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1597116 1597313 . - . gene_id "RvY_14627"; transcript_id "RvY_14627.1"; Scaffold010 rebuild transcript 1597529 1608760 . + . gene_id "RvY_14628"; transcript_id "RvY_14628.1"; gene_name "EFNB"; annotation "ephrin-B"; Pfam "[Ephrin]"; KO "K05463"; Scaffold010 rebuild exon 1597529 1597806 . + . gene_id "RvY_14628"; transcript_id "RvY_14628.1"; Scaffold010 rebuild exon 1606686 1607035 . + . gene_id "RvY_14628"; transcript_id "RvY_14628.1"; Scaffold010 rebuild exon 1607829 1607942 . + . gene_id "RvY_14628"; transcript_id "RvY_14628.1"; Scaffold010 rebuild exon 1608041 1608364 . + . gene_id "RvY_14628"; transcript_id "RvY_14628.1"; Scaffold010 rebuild exon 1608591 1608760 . + . gene_id "RvY_14628"; transcript_id "RvY_14628.1"; Scaffold010 rebuild transcript 1609268 1610276 . - . gene_id "RvY_14629"; transcript_id "RvY_14629.1"; gene_name "K01529"; annotation "hypothetical protein."; KO "K01529"; Scaffold010 rebuild exon 1609268 1609486 . - . gene_id "RvY_14629"; transcript_id "RvY_14629.1"; Scaffold010 rebuild exon 1609656 1610025 . - . gene_id "RvY_14629"; transcript_id "RvY_14629.1"; Scaffold010 rebuild exon 1610089 1610276 . - . gene_id "RvY_14629"; transcript_id "RvY_14629.1"; Scaffold010 rebuild transcript 1610654 1611430 . - . gene_id "RvY_14630"; transcript_id "RvY_14630.1"; gene_name "(1)CumB"; annotation "hypothetical protein."; Pfam "[dCMP_cyt_deam_1] Cytidine and deoxycytidylate deaminase zinc-binding region"; CDD "(1)Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]"; EC "(1)EC3.5.4.-"; KO "(1)K15441"; similar_genes "(1)TAD2_SCHPO(e-value:1.6e-11;bit-score:67.0)"; Scaffold010 rebuild exon 1610654 1610656 . - . gene_id "RvY_14630"; transcript_id "RvY_14630.1"; Scaffold010 rebuild exon 1610885 1611430 . - . gene_id "RvY_14630"; transcript_id "RvY_14630.1"; Scaffold010 rebuild transcript 1610827 1611159 . - . gene_id "RvY_14630"; transcript_id "RvY_14630.2"; gene_name "(1)CumB"; annotation "hypothetical protein."; Pfam "[dCMP_cyt_deam_1] Cytidine and deoxycytidylate deaminase zinc-binding region"; CDD "(1)Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]"; EC "(1)EC3.5.4.-"; KO "(1)K15441"; similar_genes "(1)TAD2_SCHPO(e-value:1.6e-11;bit-score:67.0)"; Scaffold010 rebuild exon 1610827 1611159 . - . gene_id "RvY_14630"; transcript_id "RvY_14630.2"; Scaffold010 rebuild transcript 1612047 1613511 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; gene_name "RP-L5e"; annotation "60S ribosomal protein L5"; Pfam "[Ribosomal_L18_c] Ribosomal L18 C-terminal region|[Ribosomal_L18p] Ribosomal L18p/L5e family"; CDD "60S ribosomal protein L5; Provisional"; KO "K02932"; similar_genes "RL5_STYCL(e-value:4.3e-107;bit-score:385.0)"; Scaffold010 rebuild exon 1612047 1612143 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1612227 1612321 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1612402 1612579 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1612669 1612871 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1612989 1613123 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1613186 1613301 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1613381 1613450 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild exon 1613509 1613511 . - . gene_id "RvY_14631"; transcript_id "RvY_14631.1"; Scaffold010 rebuild transcript 1614023 1614214 . - . gene_id "RvY_14632"; transcript_id "RvY_14632.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1614023 1614214 . - . gene_id "RvY_14632"; transcript_id "RvY_14632.1"; Scaffold010 rebuild transcript 1615674 1615994 . + . gene_id "RvY_14633"; transcript_id "RvY_14633.1"; gene_name "COG0401"; annotation "hypothetical protein."; Pfam "[Pmp3] Proteolipid membrane potential modulator"; CDD "Uncharacterized homolog of Blt101 [Function unknown]"; similar_genes "PMP3_CRYNE(e-value:1.2e-17;bit-score:88.0)"; Scaffold010 rebuild exon 1615674 1615752 . + . gene_id "RvY_14633"; transcript_id "RvY_14633.1"; Scaffold010 rebuild exon 1615900 1615994 . + . gene_id "RvY_14633"; transcript_id "RvY_14633.1"; Scaffold010 rebuild transcript 1616608 1618364 . + . gene_id "RvY_14634"; transcript_id "RvY_14634.1"; gene_name "Zwf"; annotation "hypothetical protein."; Pfam "[G6PD_N] Glucose-6-phosphate dehydrogenase, NAD binding domain|[G6PD_C] Glucose-6-phosphate dehydrogenase, C-terminal domain"; CDD "Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]"; Scaffold010 rebuild exon 1616608 1617379 . + . gene_id "RvY_14634"; transcript_id "RvY_14634.1"; Scaffold010 rebuild exon 1617565 1618364 . + . gene_id "RvY_14634"; transcript_id "RvY_14634.1"; Scaffold010 rebuild transcript 1619162 1622626 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; annotation "hypothetical protein."; Pfam "[Dzip-like_N] Iguana/Dzip1-like DAZ-interacting protein N-terminal"; Scaffold010 rebuild exon 1619162 1619626 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild exon 1619712 1620276 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild exon 1620457 1621316 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild exon 1621387 1621600 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild exon 1621683 1621835 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild exon 1622411 1622493 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild exon 1622561 1622626 . + . gene_id "RvY_14635"; transcript_id "RvY_14635.1"; Scaffold010 rebuild transcript 1623230 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold010 rebuild exon 1623230 1623296 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1623437 1623494 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1623568 1623811 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1623919 1623991 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1624138 1624342 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1624440 1624528 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1624605 1624699 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1624778 1624918 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1625004 1625090 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1625161 1625356 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1625416 1625493 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1625577 1625654 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1625767 1625844 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1625909 1626307 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1626444 1626518 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1626648 1626910 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1627222 1627414 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1627499 1627610 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild exon 1628025 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.1"; Scaffold010 rebuild transcript 1623230 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold010 rebuild exon 1623230 1623293 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1623437 1623494 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1623568 1623811 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1623919 1623991 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1624138 1624342 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1624440 1624528 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1624605 1624699 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1624778 1624918 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1625004 1625090 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1625161 1625356 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1625416 1625493 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1625577 1625654 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1625767 1625844 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1625909 1626307 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1626444 1626518 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1626648 1626910 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1627222 1627414 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1627499 1627610 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild exon 1628025 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.2"; Scaffold010 rebuild transcript 1623467 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold010 rebuild exon 1623467 1623811 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1623919 1623991 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1624138 1624342 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1624440 1624528 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1624605 1624699 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1624778 1624918 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1625004 1625090 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1625161 1625356 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1625416 1625493 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1625577 1625654 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1625767 1625844 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1625909 1626307 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1626444 1626518 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1626648 1626910 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1627222 1627414 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1627499 1627610 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild exon 1628025 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.3"; Scaffold010 rebuild transcript 1623230 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold010 rebuild exon 1623230 1623296 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1623437 1623494 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1623568 1623811 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1623919 1623991 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1624138 1624342 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1624440 1624528 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1624605 1624699 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1624778 1624918 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1625004 1625090 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1625161 1625356 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1625416 1625493 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1625577 1625654 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1625767 1625844 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1625909 1626307 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1626648 1626910 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1627222 1627414 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1627499 1627610 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild exon 1628025 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.4"; Scaffold010 rebuild transcript 1623495 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold010 rebuild exon 1623495 1623675 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1624138 1624342 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1624440 1624528 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1624605 1624699 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1624778 1624918 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1625004 1625090 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1625161 1625356 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1625416 1625493 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1625577 1625654 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1625767 1625844 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1625909 1626307 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1626444 1626518 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1626648 1626910 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1627222 1627414 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1627499 1627610 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild exon 1628025 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.5"; Scaffold010 rebuild transcript 1623467 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; gene_name "Smc"; annotation "hypothetical protein."; CDD "Chromosome segregation ATPases [Cell division and chromosome partitioning]"; Scaffold010 rebuild exon 1623467 1623494 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1623568 1623675 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1624138 1624342 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1624440 1624528 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1624605 1624699 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1624778 1624918 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1625004 1625090 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1625161 1625356 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1625416 1625493 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1625577 1625654 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1625767 1625844 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1625909 1626307 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1626444 1626518 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1626648 1626910 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1627222 1627414 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1627499 1627610 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild exon 1628025 1628151 . - . gene_id "RvY_14636"; transcript_id "RvY_14636.6"; Scaffold010 rebuild transcript 1629501 1630942 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; annotation "hypothetical protein."; Pfam "[CIAPIN1] Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis"; similar_genes "CPIN1_MOUSE(e-value:1.4e-10;bit-score:64.0)"; Scaffold010 rebuild exon 1629501 1629614 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; Scaffold010 rebuild exon 1629707 1629816 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; Scaffold010 rebuild exon 1629886 1630059 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; Scaffold010 rebuild exon 1630143 1630299 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; Scaffold010 rebuild exon 1630373 1630602 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; Scaffold010 rebuild exon 1630780 1630942 . - . gene_id "RvY_14637"; transcript_id "RvY_14637.1"; Scaffold010 rebuild transcript 1631825 1632464 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.1"; gene_name "(1)Skp1"; annotation "hypothetical protein."; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain"; CDD "(1)Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues."; Scaffold010 rebuild exon 1631825 1631848 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.1"; Scaffold010 rebuild exon 1631921 1632252 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.1"; Scaffold010 rebuild exon 1632323 1632464 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.1"; Scaffold010 rebuild transcript 1631458 1631931 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.2"; gene_name "(1)Skp1"; annotation "hypothetical protein."; Pfam "[Skp1_POZ] Skp1 family, tetramerisation domain"; CDD "(1)Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues."; Scaffold010 rebuild exon 1631458 1631848 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.2"; Scaffold010 rebuild exon 1631921 1631931 . + . gene_id "RvY_14638"; transcript_id "RvY_14638.2"; Scaffold010 rebuild transcript 1634176 1634385 . - . gene_id "RvY_14639"; transcript_id "RvY_14639.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1634176 1634385 . - . gene_id "RvY_14639"; transcript_id "RvY_14639.1"; Scaffold010 rebuild transcript 1635131 1636732 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold010 rebuild exon 1635131 1635653 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.1"; Scaffold010 rebuild exon 1635726 1635787 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.1"; Scaffold010 rebuild exon 1636342 1636415 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.1"; Scaffold010 rebuild exon 1636516 1636732 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.1"; Scaffold010 rebuild transcript 1635131 1636895 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.2"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; Scaffold010 rebuild exon 1635131 1635653 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.2"; Scaffold010 rebuild exon 1635726 1635787 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.2"; Scaffold010 rebuild exon 1636342 1636415 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.2"; Scaffold010 rebuild exon 1636516 1636646 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.2"; Scaffold010 rebuild exon 1636882 1636895 . + . gene_id "RvY_14640"; transcript_id "RvY_14640.2"; Scaffold010 rebuild transcript 1637063 1639033 . + . gene_id "RvY_14641"; transcript_id "RvY_14641.1"; annotation "hypothetical protein."; Pfam "[Sulfate_transp] Sulfate transporter family"; similar_genes "S2611_MOUSE(e-value:2.0e-09;bit-score:60.0)"; Scaffold010 rebuild exon 1637063 1637145 . + . gene_id "RvY_14641"; transcript_id "RvY_14641.1"; Scaffold010 rebuild exon 1637354 1637505 . + . gene_id "RvY_14641"; transcript_id "RvY_14641.1"; Scaffold010 rebuild exon 1637602 1638009 . + . gene_id "RvY_14641"; transcript_id "RvY_14641.1"; Scaffold010 rebuild exon 1638315 1639033 . + . gene_id "RvY_14641"; transcript_id "RvY_14641.1"; Scaffold010 rebuild transcript 1639607 1643476 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; gene_name "IG_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[C1-set] Immunoglobulin C1-set domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[C2-set_2] CD80-like C2-set immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG."; Scaffold010 rebuild exon 1639607 1639794 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1639857 1639895 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1639964 1640008 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1640085 1640265 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1640342 1640409 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1640475 1640552 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1640668 1640718 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1641153 1641311 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1641603 1641813 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1641964 1642115 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild exon 1643389 1643476 . - . gene_id "RvY_14642"; transcript_id "RvY_14642.1"; Scaffold010 rebuild transcript 1643997 1644176 . - . gene_id "RvY_14643"; transcript_id "RvY_14643.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1643997 1644176 . - . gene_id "RvY_14643"; transcript_id "RvY_14643.1"; Scaffold010 rebuild transcript 1647107 1648638 . - . gene_id "RvY_14644"; transcript_id "RvY_14644.1"; gene_name "GH18_chitolectin_chitotriosidase"; annotation "hypothetical protein."; Pfam "[Glyco_hydro_18] Glycosyl hydrolases family 18"; CDD "This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically Scaffold010 rebuild exon 1647107 1647574 . - . gene_id "RvY_14644"; transcript_id "RvY_14644.1"; Scaffold010 rebuild exon 1647691 1647910 . - . gene_id "RvY_14644"; transcript_id "RvY_14644.1"; Scaffold010 rebuild exon 1648166 1648638 . - . gene_id "RvY_14644"; transcript_id "RvY_14644.1"; Scaffold010 rebuild transcript 1650841 1660689 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; gene_name "(1)IG_like(2)Ig3_NCAM-1_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.(2)Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain."; Scaffold010 rebuild exon 1650841 1650916 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1655704 1655873 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1656150 1656357 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1658461 1658619 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1658687 1658737 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1658813 1658890 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1658949 1659016 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1659079 1659262 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1660044 1660088 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1660168 1660245 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild exon 1660490 1660689 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.1"; Scaffold010 rebuild transcript 1650841 1658898 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; gene_name "(1)IG_like(2)Ig3_NCAM-1_like"; annotation "hypothetical protein."; Pfam "[I-set] Immunoglobulin I-set domain|[Ig_2] Immunoglobulin domain|[V-set] Immunoglobulin V-set domain|[ig] Immunoglobulin domain|[Ig_3] Immunoglobulin domain"; CDD "(1)Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.(2)Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain."; Scaffold010 rebuild exon 1650841 1650916 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; Scaffold010 rebuild exon 1655704 1655873 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; Scaffold010 rebuild exon 1656150 1656357 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; Scaffold010 rebuild exon 1658461 1658619 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; Scaffold010 rebuild exon 1658687 1658737 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; Scaffold010 rebuild exon 1658813 1658898 . + . gene_id "RvY_14645"; transcript_id "RvY_14645.2"; Scaffold010 rebuild transcript 1661101 1663800 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; gene_name "ASTL"; annotation "astacin-like metalloendopeptidase [EC:3.4.-.-]"; Pfam "[Hemopexin]|[Astacin] Astacin (Peptidase family M12A)"; EC "EC3.4.-.-|EC3.4.24.21"; KO "K08778"; similar_genes "NAS13_CAEEL(e-value:1.4e-14;bit-score:78.0)"; Scaffold010 rebuild exon 1661101 1661208 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1661271 1661476 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1661574 1661712 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1661772 1661905 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1661975 1662353 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1662423 1662523 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1662597 1662778 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1662893 1662963 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1663091 1663137 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1663211 1663286 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1663388 1663434 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1663505 1663579 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild exon 1663683 1663800 . - . gene_id "RvY_14646"; transcript_id "RvY_14646.1"; Scaffold010 rebuild transcript 1664542 1667228 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; gene_name "gidA"; annotation "tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG"; Pfam "[Pyr_redox_2] Pyridine nucleotide-disulphide oxidoreductase|[GIDA_assoc_3] GidA associated domain 3|[FAD_oxidored] FAD dependent oxidoreductase|[GIDA] Glucose inhibited division protein A"; CDD "tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated"; KO "K03495"; similar_genes "MNMG_NITHX(e-value:3.4e-60;bit-score:229.0)"; Scaffold010 rebuild exon 1664542 1664886 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild exon 1664965 1665221 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild exon 1665287 1665493 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild exon 1665565 1665863 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild exon 1665935 1666486 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild exon 1666700 1666991 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild exon 1667060 1667228 . - . gene_id "RvY_14647"; transcript_id "RvY_14647.1"; Scaffold010 rebuild transcript 1672089 1672283 . - . gene_id "RvY_14648"; transcript_id "RvY_14648.1"; gene_name "GT1_ALG2_like"; annotation "hypothetical protein."; CDD "This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans."; EC "EC2.4.1.-"; similar_genes "ALG2_RHIPU(e-value:6.0e-11;bit-score:65.0)"; Scaffold010 rebuild exon 1672089 1672283 . - . gene_id "RvY_14648"; transcript_id "RvY_14648.1"; Scaffold010 rebuild transcript 1672649 1672915 . + . gene_id "RvY_14649"; transcript_id "RvY_14649.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1672649 1672915 . + . gene_id "RvY_14649"; transcript_id "RvY_14649.1"; Scaffold010 rebuild transcript 1673749 1673982 . - . gene_id "RvY_14650"; transcript_id "RvY_14650.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1673749 1673982 . - . gene_id "RvY_14650"; transcript_id "RvY_14650.1"; Scaffold010 rebuild transcript 1678923 1679099 . - . gene_id "RvY_14651"; transcript_id "RvY_14651.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1678923 1679099 . - . gene_id "RvY_14651"; transcript_id "RvY_14651.1"; Scaffold010 rebuild transcript 1680798 1683809 . + . gene_id "RvY_14652"; transcript_id "RvY_14652.1"; annotation "hypothetical protein."; Pfam "[Sec15] Exocyst complex subunit Sec15-like"; Scaffold010 rebuild exon 1680798 1681157 . + . gene_id "RvY_14652"; transcript_id "RvY_14652.1"; Scaffold010 rebuild exon 1681372 1682163 . + . gene_id "RvY_14652"; transcript_id "RvY_14652.1"; Scaffold010 rebuild exon 1682220 1683011 . + . gene_id "RvY_14652"; transcript_id "RvY_14652.1"; Scaffold010 rebuild exon 1683075 1683809 . + . gene_id "RvY_14652"; transcript_id "RvY_14652.1"; Scaffold010 rebuild transcript 1684265 1685907 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; gene_name "WD40"; annotation "hypothetical protein."; Pfam "[WD40] WD domain, G-beta repeat|[eIF2A] Eukaryotic translation initiation factor eIF2A"; CDD "WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment."; similar_genes "WD51A_MOUSE(e-value:1.8e-14;bit-score:77.0)"; Scaffold010 rebuild exon 1684265 1684279 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1684369 1684510 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1684639 1684718 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1684795 1684886 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1684964 1685072 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1685221 1685291 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1685372 1685598 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild exon 1685666 1685907 . + . gene_id "RvY_14653"; transcript_id "RvY_14653.1"; Scaffold010 rebuild transcript 1686093 1687757 . - . gene_id "RvY_14654"; transcript_id "RvY_14654.1"; gene_name "LDH_1"; annotation "L-lactate dehydrogenase A chain"; Pfam "[Ldh_1_N] lactate/malate dehydrogenase, NAD binding domain|[Ldh_1_C] lactate/malate dehydrogenase, alpha/beta C-terminal domain"; CDD "A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others."; EC "EC1.1.1.27"; similar_genes "LDHA_SCEUN(e-value:1.1e-69;bit-score:261.0)"; Scaffold010 rebuild exon 1686093 1686381 . - . gene_id "RvY_14654"; transcript_id "RvY_14654.1"; Scaffold010 rebuild exon 1686535 1686652 . - . gene_id "RvY_14654"; transcript_id "RvY_14654.1"; Scaffold010 rebuild exon 1686725 1686961 . - . gene_id "RvY_14654"; transcript_id "RvY_14654.1"; Scaffold010 rebuild exon 1687655 1687757 . - . gene_id "RvY_14654"; transcript_id "RvY_14654.1"; Scaffold010 rebuild transcript 1687984 1692687 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; gene_name "K01104"; annotation "protein-tyrosine phosphatase [EC:3.1.3.48]"; Pfam "[BRO1] BRO1-like domain|[ALIX_LYPXL_bnd] ALIX V-shaped domain binding to HIV"; EC "EC3.1.3.48"; KO "K01104"; similar_genes "PTN23_RAT(e-value:8.7e-06;bit-score:48.0)"; Scaffold010 rebuild exon 1687984 1688430 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1688637 1689316 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1689383 1689705 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1689771 1690083 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1690157 1690358 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1690422 1690635 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1690706 1690771 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1690834 1691022 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1691090 1691154 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1691236 1691400 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1691467 1691628 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1691689 1691820 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1691894 1692020 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1692103 1692230 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1692302 1692376 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1692504 1692573 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild exon 1692671 1692687 . - . gene_id "RvY_14655"; transcript_id "RvY_14655.1"; Scaffold010 rebuild transcript 1693545 1694842 . + . gene_id "RvY_14656"; transcript_id "RvY_14656.1"; annotation "hypothetical protein."; Pfam "[DDE_1] DDE superfamily endonuclease"; Scaffold010 rebuild exon 1693545 1693652 . + . gene_id "RvY_14656"; transcript_id "RvY_14656.1"; Scaffold010 rebuild exon 1694150 1694842 . + . gene_id "RvY_14656"; transcript_id "RvY_14656.1"; Scaffold010 rebuild transcript 1695424 1695723 . + . gene_id "RvY_14657"; transcript_id "RvY_14657.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1695424 1695629 . + . gene_id "RvY_14657"; transcript_id "RvY_14657.1"; Scaffold010 rebuild exon 1695714 1695723 . + . gene_id "RvY_14657"; transcript_id "RvY_14657.1"; Scaffold010 rebuild transcript 1695910 1696323 . + . gene_id "RvY_14658"; transcript_id "RvY_14658.1"; annotation "hypothetical protein."; Pfam "[Rdx] Rdx family"; similar_genes "SELTB_DANRE(e-value:4.1e-14;bit-score:76.0)"; Scaffold010 rebuild exon 1695910 1695951 . + . gene_id "RvY_14658"; transcript_id "RvY_14658.1"; Scaffold010 rebuild exon 1696053 1696140 . + . gene_id "RvY_14658"; transcript_id "RvY_14658.1"; Scaffold010 rebuild exon 1696211 1696323 . + . gene_id "RvY_14658"; transcript_id "RvY_14658.1"; Scaffold010 rebuild transcript 1696741 1697305 . - . gene_id "RvY_14659"; transcript_id "RvY_14659.1"; gene_name "NDUFB7"; annotation "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 7 [EC:1.6.5.3 1.6.99.3]"; Pfam "[NDUF_B7] NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)"; EC "EC1.6.5.3|EC1.6.99.3"; KO "K03963"; similar_genes "NDUB7_CAEEL(e-value:1.5e-07;bit-score:54.0)"; Scaffold010 rebuild exon 1696741 1696867 . - . gene_id "RvY_14659"; transcript_id "RvY_14659.1"; Scaffold010 rebuild exon 1696932 1697100 . - . gene_id "RvY_14659"; transcript_id "RvY_14659.1"; Scaffold010 rebuild exon 1697161 1697305 . - . gene_id "RvY_14659"; transcript_id "RvY_14659.1"; Scaffold010 rebuild transcript 1698776 1701823 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; annotation "hypothetical protein."; Pfam "[DUF3808]|[TPR_11] TPR repeat"; Scaffold010 rebuild exon 1698776 1699074 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1699137 1699241 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1699316 1699391 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1699457 1699553 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1699648 1699780 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1699845 1700079 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1700157 1700196 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1700293 1700503 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1700611 1700710 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1700784 1700860 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1700944 1701061 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1701127 1701371 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1701447 1701563 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild exon 1701655 1701823 . + . gene_id "RvY_14660"; transcript_id "RvY_14660.1"; Scaffold010 rebuild transcript 1702445 1703113 . + . gene_id "RvY_14661"; transcript_id "RvY_14661.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1702445 1702574 . + . gene_id "RvY_14661"; transcript_id "RvY_14661.1"; Scaffold010 rebuild exon 1702627 1702739 . + . gene_id "RvY_14661"; transcript_id "RvY_14661.1"; Scaffold010 rebuild exon 1702745 1703113 . + . gene_id "RvY_14661"; transcript_id "RvY_14661.1"; Scaffold010 rebuild transcript 1703212 1704839 . - . gene_id "RvY_14662"; transcript_id "RvY_14662.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1703212 1703560 . - . gene_id "RvY_14662"; transcript_id "RvY_14662.1"; Scaffold010 rebuild exon 1703626 1704005 . - . gene_id "RvY_14662"; transcript_id "RvY_14662.1"; Scaffold010 rebuild exon 1704084 1704191 . - . gene_id "RvY_14662"; transcript_id "RvY_14662.1"; Scaffold010 rebuild exon 1704252 1704367 . - . gene_id "RvY_14662"; transcript_id "RvY_14662.1"; Scaffold010 rebuild exon 1704440 1704839 . - . gene_id "RvY_14662"; transcript_id "RvY_14662.1"; Scaffold010 rebuild transcript 1705512 1707119 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; annotation "hypothetical protein."; Pfam "[Tmpp129] Putative transmembrane protein precursor"; similar_genes "(1)TM129_CHICK(e-value:2.2e-19;bit-score:93.0)"; Scaffold010 rebuild exon 1705512 1705722 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; Scaffold010 rebuild exon 1705776 1706209 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; Scaffold010 rebuild exon 1706282 1706430 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; Scaffold010 rebuild exon 1706509 1706662 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; Scaffold010 rebuild exon 1706756 1706896 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; Scaffold010 rebuild exon 1707024 1707119 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.1"; Scaffold010 rebuild transcript 1705512 1706387 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.2"; annotation "hypothetical protein."; Pfam "[Tmpp129] Putative transmembrane protein precursor"; similar_genes "(1)TM129_CHICK(e-value:2.2e-19;bit-score:93.0)"; Scaffold010 rebuild exon 1705512 1705722 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.2"; Scaffold010 rebuild exon 1705776 1706209 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.2"; Scaffold010 rebuild exon 1706286 1706387 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.2"; Scaffold010 rebuild transcript 1705512 1706266 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.3"; annotation "hypothetical protein."; Pfam "[Tmpp129] Putative transmembrane protein precursor"; similar_genes "(1)TM129_CHICK(e-value:2.2e-19;bit-score:93.0)"; Scaffold010 rebuild exon 1705512 1705722 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.3"; Scaffold010 rebuild exon 1705776 1706266 . + . gene_id "RvY_14663"; transcript_id "RvY_14663.3"; Scaffold010 rebuild transcript 1707911 1709967 . + . gene_id "RvY_14664"; transcript_id "RvY_14664.1"; gene_name "2A0114euk"; annotation "hypothetical protein."; Pfam "[MFS_1] Major Facilitator Superfamily|[Sugar_tr] Sugar (and other) transporter"; CDD "Na(+)-dependent inorganic phosphate cotransporter."; similar_genes "S17A5_MOUSE(e-value:3.6e-13;bit-score:73.0)"; Scaffold010 rebuild exon 1707911 1708051 . + . gene_id "RvY_14664"; transcript_id "RvY_14664.1"; Scaffold010 rebuild exon 1708148 1708381 . + . gene_id "RvY_14664"; transcript_id "RvY_14664.1"; Scaffold010 rebuild exon 1708521 1708922 . + . gene_id "RvY_14664"; transcript_id "RvY_14664.1"; Scaffold010 rebuild exon 1709176 1709614 . + . gene_id "RvY_14664"; transcript_id "RvY_14664.1"; Scaffold010 rebuild exon 1709732 1709967 . + . gene_id "RvY_14664"; transcript_id "RvY_14664.1"; Scaffold010 rebuild transcript 1711072 1712886 . + . gene_id "RvY_14665"; transcript_id "RvY_14665.1"; annotation "hypothetical protein."; Pfam "[DDE_3] DDE superfamily endonuclease"; Scaffold010 rebuild exon 1711072 1711711 . + . gene_id "RvY_14665"; transcript_id "RvY_14665.1"; Scaffold010 rebuild exon 1711750 1711924 . + . gene_id "RvY_14665"; transcript_id "RvY_14665.1"; Scaffold010 rebuild exon 1712247 1712544 . + . gene_id "RvY_14665"; transcript_id "RvY_14665.1"; Scaffold010 rebuild exon 1712689 1712886 . + . gene_id "RvY_14665"; transcript_id "RvY_14665.1"; Scaffold010 rebuild transcript 1713444 1713641 . - . gene_id "RvY_14666"; transcript_id "RvY_14666.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1713444 1713641 . - . gene_id "RvY_14666"; transcript_id "RvY_14666.1"; Scaffold010 rebuild transcript 1717162 1717690 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1717162 1717542 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.1"; Scaffold010 rebuild exon 1717610 1717690 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.1"; Scaffold010 rebuild transcript 1717508 1717974 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1717508 1717542 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.2"; Scaffold010 rebuild exon 1717610 1717774 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.2"; Scaffold010 rebuild exon 1717839 1717974 . - . gene_id "RvY_14667"; transcript_id "RvY_14667.2"; Scaffold010 rebuild transcript 1719490 1723354 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1719490 1720034 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1720250 1720590 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1720662 1720786 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1720842 1721126 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1721259 1721420 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1721590 1722011 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1722089 1722215 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1722286 1722513 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1722579 1722733 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1722810 1722905 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild exon 1723222 1723354 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.1"; Scaffold010 rebuild transcript 1719490 1721482 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1719490 1720034 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; Scaffold010 rebuild exon 1720250 1720590 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; Scaffold010 rebuild exon 1720662 1720786 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; Scaffold010 rebuild exon 1720842 1721126 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; Scaffold010 rebuild exon 1721259 1721420 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; Scaffold010 rebuild exon 1721477 1721482 . + . gene_id "RvY_14668"; transcript_id "RvY_14668.2"; Scaffold010 rebuild transcript 1724281 1724706 . - . gene_id "RvY_14669"; transcript_id "RvY_14669.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1724281 1724706 . - . gene_id "RvY_14669"; transcript_id "RvY_14669.1"; Scaffold010 rebuild transcript 1724492 1725013 . + . gene_id "RvY_14670"; transcript_id "RvY_14670.1"; gene_name "DUF1358"; annotation "hypothetical protein."; Pfam "[DUF1358]"; CDD "Protein of unknown function (DUF1358). This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown."; similar_genes "CF035_XENLA(e-value:7.8e-09;bit-score:58.0)"; Scaffold010 rebuild exon 1724492 1725013 . + . gene_id "RvY_14670"; transcript_id "RvY_14670.1"; Scaffold010 rebuild transcript 1725119 1725755 . - . gene_id "RvY_14671"; transcript_id "RvY_14671.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1725119 1725208 . - . gene_id "RvY_14671"; transcript_id "RvY_14671.1"; Scaffold010 rebuild exon 1725336 1725422 . - . gene_id "RvY_14671"; transcript_id "RvY_14671.1"; Scaffold010 rebuild exon 1725657 1725755 . - . gene_id "RvY_14671"; transcript_id "RvY_14671.1"; Scaffold010 rebuild transcript 1726603 1731560 . + . gene_id "RvY_14672"; transcript_id "RvY_14672.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1726603 1726798 . + . gene_id "RvY_14672"; transcript_id "RvY_14672.1"; Scaffold010 rebuild exon 1730696 1730987 . + . gene_id "RvY_14672"; transcript_id "RvY_14672.1"; Scaffold010 rebuild exon 1731206 1731335 . + . gene_id "RvY_14672"; transcript_id "RvY_14672.1"; Scaffold010 rebuild exon 1731435 1731560 . + . gene_id "RvY_14672"; transcript_id "RvY_14672.1"; Scaffold010 rebuild transcript 1733431 1733823 . + . gene_id "RvY_14673"; transcript_id "RvY_14673.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1733431 1733823 . + . gene_id "RvY_14673"; transcript_id "RvY_14673.1"; Scaffold010 rebuild transcript 1734417 1735108 . - . gene_id "RvY_14674"; transcript_id "RvY_14674.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1734417 1734980 . - . gene_id "RvY_14674"; transcript_id "RvY_14674.1"; Scaffold010 rebuild exon 1734995 1735108 . - . gene_id "RvY_14674"; transcript_id "RvY_14674.1"; Scaffold010 rebuild transcript 1735955 1736341 . + . gene_id "RvY_14675"; transcript_id "RvY_14675.1"; gene_name "PFN"; annotation "profilin"; Pfam "[Profilin]"; CDD "Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline."; KO "K05759"; similar_genes "PROF1_PHYPO(e-value:7.9e-11;bit-score:65.0)"; Scaffold010 rebuild exon 1735955 1736341 . + . gene_id "RvY_14675"; transcript_id "RvY_14675.1"; Scaffold010 rebuild transcript 1737255 1738741 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; annotation "hypothetical protein."; Pfam "[TAP42] TAP42-like family"; Scaffold010 rebuild exon 1737255 1737341 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; Scaffold010 rebuild exon 1737450 1737562 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; Scaffold010 rebuild exon 1737628 1737979 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; Scaffold010 rebuild exon 1738116 1738277 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; Scaffold010 rebuild exon 1738360 1738636 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; Scaffold010 rebuild exon 1738701 1738741 . + . gene_id "RvY_14676"; transcript_id "RvY_14676.1"; Scaffold010 rebuild transcript 1739068 1740153 . - . gene_id "RvY_14677"; transcript_id "RvY_14677.1"; gene_name "MIT_C"; annotation "hypothetical protein."; Pfam "[MIT] MIT (microtubule interacting and transport) domain"; CDD "MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown."; similar_genes "MITD1_RAT(e-value:7.0e-14;bit-score:75.0)"; Scaffold010 rebuild exon 1739068 1739248 . - . gene_id "RvY_14677"; transcript_id "RvY_14677.1"; Scaffold010 rebuild exon 1739311 1739432 . - . gene_id "RvY_14677"; transcript_id "RvY_14677.1"; Scaffold010 rebuild exon 1739521 1739607 . - . gene_id "RvY_14677"; transcript_id "RvY_14677.1"; Scaffold010 rebuild exon 1739675 1739916 . - . gene_id "RvY_14677"; transcript_id "RvY_14677.1"; Scaffold010 rebuild exon 1740009 1740153 . - . gene_id "RvY_14677"; transcript_id "RvY_14677.1"; Scaffold010 rebuild transcript 1740950 1742147 . + . gene_id "RvY_14678"; transcript_id "RvY_14678.1"; gene_name "MTFMT"; annotation "methionyl-tRNA formyltransferase [EC:2.1.2.9]"; Pfam "[Formyl_trans_N] Formyl transferase|[Formyl_trans_C] Formyl transferase, C-terminal domain"; CDD "methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met."; EC "EC2.1.2.9"; KO "K00604"; similar_genes "FMT_BOVIN(e-value:1.7e-21;bit-score:100.0)"; Scaffold010 rebuild exon 1740950 1741278 . + . gene_id "RvY_14678"; transcript_id "RvY_14678.1"; Scaffold010 rebuild exon 1741340 1742147 . + . gene_id "RvY_14678"; transcript_id "RvY_14678.1"; Scaffold010 rebuild transcript 1742952 1746272 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; gene_name "HB"; annotation "hunchback"; KO "K09213"; similar_genes "HUNB_BOMMO(e-value:2.8e-19;bit-score:93.0)"; Scaffold010 rebuild exon 1742952 1743613 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; Scaffold010 rebuild exon 1743678 1743999 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; Scaffold010 rebuild exon 1744254 1744790 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; Scaffold010 rebuild exon 1745016 1745448 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; Scaffold010 rebuild exon 1745583 1746019 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; Scaffold010 rebuild exon 1746099 1746272 . - . gene_id "RvY_14679"; transcript_id "RvY_14679.1"; Scaffold010 rebuild transcript 1748931 1751663 . - . gene_id "RvY_14680"; transcript_id "RvY_14680.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1748931 1748998 . - . gene_id "RvY_14680"; transcript_id "RvY_14680.1"; Scaffold010 rebuild exon 1749728 1749863 . - . gene_id "RvY_14680"; transcript_id "RvY_14680.1"; Scaffold010 rebuild exon 1751319 1751409 . - . gene_id "RvY_14680"; transcript_id "RvY_14680.1"; Scaffold010 rebuild exon 1751542 1751663 . - . gene_id "RvY_14680"; transcript_id "RvY_14680.1"; Scaffold010 rebuild transcript 1757971 1759643 . + . gene_id "RvY_14681"; transcript_id "RvY_14681.1"; annotation "hypothetical protein."; Pfam "[AKAP7_NLS] AKAP7 2'5' RNA ligase-like domain|[KH_1] KH domain|[KH_3] KH domain"; Scaffold010 rebuild exon 1757971 1758130 . + . gene_id "RvY_14681"; transcript_id "RvY_14681.1"; Scaffold010 rebuild exon 1758245 1758466 . + . gene_id "RvY_14681"; transcript_id "RvY_14681.1"; Scaffold010 rebuild exon 1758553 1758731 . + . gene_id "RvY_14681"; transcript_id "RvY_14681.1"; Scaffold010 rebuild exon 1758818 1758954 . + . gene_id "RvY_14681"; transcript_id "RvY_14681.1"; Scaffold010 rebuild exon 1759061 1759643 . + . gene_id "RvY_14681"; transcript_id "RvY_14681.1"; Scaffold010 rebuild transcript 1759784 1760932 . - . gene_id "RvY_14682"; transcript_id "RvY_14682.1"; gene_name "MenA"; annotation "hypothetical protein."; CDD "1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]"; Scaffold010 rebuild exon 1759784 1760932 . - . gene_id "RvY_14682"; transcript_id "RvY_14682.1"; Scaffold010 rebuild transcript 1761645 1763348 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; gene_name "Bromodomain"; annotation "hypothetical protein."; CDD "Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine."; Scaffold010 rebuild exon 1761645 1761800 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; Scaffold010 rebuild exon 1761869 1762359 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; Scaffold010 rebuild exon 1762515 1762589 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; Scaffold010 rebuild exon 1762712 1762783 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; Scaffold010 rebuild exon 1762909 1763083 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; Scaffold010 rebuild exon 1763151 1763348 . + . gene_id "RvY_14683"; transcript_id "RvY_14683.1"; Scaffold010 rebuild transcript 1764038 1765345 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; gene_name "PTZ00184"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand_3] Cytoskeletal-regulatory complex EF hand|[efhand] EF hand|[UPF0154] Uncharacterised protein family (UPF0154)|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "calmodulin; Provisional"; similar_genes "CALL3_MOUSE(e-value:1.4e-16;bit-score:84.0)"; Scaffold010 rebuild exon 1764038 1764176 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; Scaffold010 rebuild exon 1764404 1764547 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; Scaffold010 rebuild exon 1764665 1764774 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; Scaffold010 rebuild exon 1764863 1764953 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; Scaffold010 rebuild exon 1765077 1765133 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; Scaffold010 rebuild exon 1765248 1765345 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.1"; Scaffold010 rebuild transcript 1764003 1765345 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; gene_name "PTZ00184"; annotation "hypothetical protein."; Pfam "[SPARC_Ca_bdg] Secreted protein acidic and rich in cysteine Ca binding region|[efhand_3] Cytoskeletal-regulatory complex EF hand|[efhand] EF hand|[UPF0154] Uncharacterised protein family (UPF0154)|[EF_hand_3] EF hand|[EF_hand_6] EF-hand domain pair|[EF_hand_4] EF-hand domain|[EF_hand_5] EF-hand domain pair"; CDD "calmodulin; Provisional"; similar_genes "CALL3_MOUSE(e-value:1.4e-16;bit-score:84.0)"; Scaffold010 rebuild exon 1764003 1764003 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild exon 1764069 1764176 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild exon 1764404 1764547 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild exon 1764665 1764774 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild exon 1764863 1764953 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild exon 1765077 1765133 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild exon 1765248 1765345 . + . gene_id "RvY_14684"; transcript_id "RvY_14684.2"; Scaffold010 rebuild transcript 1765944 1768039 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; gene_name "PHKG"; annotation "putative Phosphorylase b kinase gamma catalytic chain, testis/liver isoform"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase|[Kdo] Lipopolysaccharide kinase (Kdo/WaaP) family"; EC "EC2.7.11.19"; KO "K00871"; similar_genes "PHKG2_HUMAN(e-value:1.6e-34;bit-score:144.0)"; Scaffold010 rebuild exon 1765944 1766045 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild exon 1766241 1766588 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild exon 1766648 1766796 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild exon 1766875 1767032 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild exon 1767276 1767304 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild exon 1767371 1767504 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild exon 1767757 1768039 . - . gene_id "RvY_14685"; transcript_id "RvY_14685.1"; Scaffold010 rebuild transcript 1770871 1772051 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.1"; gene_name "(1)ACER"; annotation "(1)alkaline ceramidase [EC:3.5.1.23](2)hypothetical protein."; Pfam "[Ceramidase]"; EC "EC3.5.1.23"; KO "(1)K01441"; similar_genes "(1)ACASE_DROME(e-value:2.1e-17;bit-score:87.0)(2)ACASE_DROME(e-value:7.9e-11;bit-score:65.0)"; Scaffold010 rebuild exon 1770871 1771391 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.1"; Scaffold010 rebuild exon 1771463 1771486 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.1"; Scaffold010 rebuild exon 1771587 1771646 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.1"; Scaffold010 rebuild exon 1771728 1771752 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.1"; Scaffold010 rebuild exon 1771839 1772051 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.1"; Scaffold010 rebuild transcript 1770871 1771767 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.2"; gene_name "(1)ACER"; annotation "(1)alkaline ceramidase [EC:3.5.1.23](2)hypothetical protein."; Pfam "[Ceramidase]"; EC "EC3.5.1.23"; KO "(1)K01441"; similar_genes "(1)ACASE_DROME(e-value:2.1e-17;bit-score:87.0)(2)ACASE_DROME(e-value:7.9e-11;bit-score:65.0)"; Scaffold010 rebuild exon 1770871 1771391 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.2"; Scaffold010 rebuild exon 1771463 1771486 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.2"; Scaffold010 rebuild exon 1771587 1771646 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.2"; Scaffold010 rebuild exon 1771728 1771767 . + . gene_id "RvY_14686"; transcript_id "RvY_14686.2"; Scaffold010 rebuild transcript 1772580 1774358 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; gene_name "PHKG"; annotation "putative Phosphorylase b kinase gamma catalytic chain, testis/liver isoform"; Pfam "[Pkinase] Protein kinase domain|[Pkinase_Tyr] Protein tyrosine kinase"; CDD "Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily."; EC "EC2.7.11.19"; KO "K00871"; similar_genes "PHKG2_MOUSE(e-value:8.5e-38;bit-score:155.0)"; Scaffold010 rebuild exon 1772580 1772684 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1772762 1773032 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1773092 1773269 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1773377 1773443 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1773511 1773643 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1773715 1773814 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1773932 1773994 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild exon 1774076 1774358 . - . gene_id "RvY_14687"; transcript_id "RvY_14687.1"; Scaffold010 rebuild transcript 1775319 1775991 . - . gene_id "RvY_14688"; transcript_id "RvY_14688.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1775319 1775596 . - . gene_id "RvY_14688"; transcript_id "RvY_14688.1"; Scaffold010 rebuild exon 1775772 1775838 . - . gene_id "RvY_14688"; transcript_id "RvY_14688.1"; Scaffold010 rebuild exon 1775938 1775991 . - . gene_id "RvY_14688"; transcript_id "RvY_14688.1"; Scaffold010 rebuild transcript 1776464 1777893 . + . gene_id "RvY_14689"; transcript_id "RvY_14689.1"; gene_name "ALG2"; annotation "putative Alpha-1,3-mannosyltransferase ALG2"; Pfam "[Glyco_trans_1_4] Glycosyl transferases group 1|[Glyco_trans_4_4] Glycosyl transferase 4-like domain|[Glyco_trans_1_2] Glycosyl transferases group 1|[Glyco_transf_4] Glycosyltransferase Family 4|[Glycos_transf_1] Glycosyl transferases group 1"; CDD "This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans."; EC "EC2.4.1.-|EC2.4.1.132"; KO "K03843"; similar_genes "ALG2_RHIPU(e-value:3.1e-29;bit-score:126.0)"; Scaffold010 rebuild exon 1776464 1777010 . + . gene_id "RvY_14689"; transcript_id "RvY_14689.1"; Scaffold010 rebuild exon 1777072 1777275 . + . gene_id "RvY_14689"; transcript_id "RvY_14689.1"; Scaffold010 rebuild exon 1777352 1777893 . + . gene_id "RvY_14689"; transcript_id "RvY_14689.1"; Scaffold010 rebuild transcript 1778446 1779802 . + . gene_id "RvY_14690"; transcript_id "RvY_14690.1"; gene_name "Glyco_transf_11"; annotation "hypothetical protein."; Pfam "[Glyco_transf_11] Glycosyl transferase family 11"; CDD "Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes."; Scaffold010 rebuild exon 1778446 1778584 . + . gene_id "RvY_14690"; transcript_id "RvY_14690.1"; Scaffold010 rebuild exon 1778648 1778920 . + . gene_id "RvY_14690"; transcript_id "RvY_14690.1"; Scaffold010 rebuild exon 1779009 1779802 . + . gene_id "RvY_14690"; transcript_id "RvY_14690.1"; Scaffold010 rebuild transcript 1780087 1780594 . - . gene_id "RvY_14691"; transcript_id "RvY_14691.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1780087 1780337 . - . gene_id "RvY_14691"; transcript_id "RvY_14691.1"; Scaffold010 rebuild exon 1780418 1780487 . - . gene_id "RvY_14691"; transcript_id "RvY_14691.1"; Scaffold010 rebuild exon 1780547 1780594 . - . gene_id "RvY_14691"; transcript_id "RvY_14691.1"; Scaffold010 rebuild transcript 1781093 1782327 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.1"; gene_name "Lactamase_B"; annotation "hypothetical protein."; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Lactamase_B_2] Beta-lactamase superfamily domain"; CDD "Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor."; EC "EC3.-.-.-"; similar_genes "LACB2_BOVIN(e-value:2.5e-22;bit-score:103.0)"; Scaffold010 rebuild exon 1781093 1781286 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.1"; Scaffold010 rebuild exon 1781348 1781611 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.1"; Scaffold010 rebuild exon 1781681 1782008 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.1"; Scaffold010 rebuild exon 1782088 1782327 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.1"; Scaffold010 rebuild transcript 1781093 1782327 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.2"; gene_name "Lactamase_B"; annotation "hypothetical protein."; Pfam "[Lactamase_B] Metallo-beta-lactamase superfamily|[Lactamase_B_2] Beta-lactamase superfamily domain"; CDD "Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor."; EC "EC3.-.-.-"; similar_genes "LACB2_BOVIN(e-value:2.5e-22;bit-score:103.0)"; Scaffold010 rebuild exon 1781093 1781286 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.2"; Scaffold010 rebuild exon 1781348 1781611 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.2"; Scaffold010 rebuild exon 1781681 1782008 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.2"; Scaffold010 rebuild exon 1782088 1782169 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.2"; Scaffold010 rebuild exon 1782275 1782327 . + . gene_id "RvY_14692"; transcript_id "RvY_14692.2"; Scaffold010 rebuild transcript 1783544 1784185 . + . gene_id "RvY_14693"; transcript_id "RvY_14693.1"; gene_name "SF3A2"; annotation "Splicing factor 3A subunit 2"; Pfam "[zf-met] Zinc-finger of C2H2 type"; CDD "Splicing factor 3a, subunit 2 [RNA processing and modification]"; KO "K12826"; similar_genes "SF3A2_RAT(e-value:9.2e-101;bit-score:364.0)"; Scaffold010 rebuild exon 1783544 1784185 . + . gene_id "RvY_14693"; transcript_id "RvY_14693.1"; Scaffold010 rebuild transcript 1784490 1787034 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; gene_name "(1)Las1"; annotation "hypothetical protein."; Pfam "[Las1] Las1-like"; CDD "(1)Las1-like. Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth."; Scaffold010 rebuild exon 1784490 1784617 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1784714 1784818 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1784895 1785067 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1785150 1785252 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1785364 1785582 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1785681 1785855 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1785928 1786071 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1786136 1786331 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1786403 1786528 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1786590 1786715 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild exon 1786787 1787034 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.1"; Scaffold010 rebuild transcript 1785101 1786416 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; gene_name "(1)Las1"; annotation "hypothetical protein."; Pfam "[Las1] Las1-like"; CDD "(1)Las1-like. Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth."; Scaffold010 rebuild exon 1785101 1785252 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; Scaffold010 rebuild exon 1785364 1785582 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; Scaffold010 rebuild exon 1785681 1785855 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; Scaffold010 rebuild exon 1785928 1786071 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; Scaffold010 rebuild exon 1786136 1786331 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; Scaffold010 rebuild exon 1786403 1786416 . - . gene_id "RvY_14694"; transcript_id "RvY_14694.2"; Scaffold010 rebuild transcript 1787662 1788666 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.1"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; similar_genes "DIC_HUMAN(e-value:1.6e-17;bit-score:87.0)"; Scaffold010 rebuild exon 1787662 1787704 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.1"; Scaffold010 rebuild exon 1787796 1787848 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.1"; Scaffold010 rebuild exon 1787914 1788036 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.1"; Scaffold010 rebuild exon 1788163 1788666 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.1"; Scaffold010 rebuild transcript 1788199 1788968 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.2"; annotation "hypothetical protein."; Pfam "[Mito_carr] Mitochondrial carrier protein"; similar_genes "DIC_HUMAN(e-value:1.6e-17;bit-score:87.0)"; Scaffold010 rebuild exon 1788199 1788567 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.2"; Scaffold010 rebuild exon 1788645 1788725 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.2"; Scaffold010 rebuild exon 1788798 1788968 . + . gene_id "RvY_14695"; transcript_id "RvY_14695.2"; Scaffold010 rebuild transcript 1789538 1790110 . - . gene_id "RvY_14696"; transcript_id "RvY_14696.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1789538 1789872 . - . gene_id "RvY_14696"; transcript_id "RvY_14696.1"; Scaffold010 rebuild exon 1790074 1790110 . - . gene_id "RvY_14696"; transcript_id "RvY_14696.1"; Scaffold010 rebuild transcript 1790855 1791448 . + . gene_id "RvY_14697"; transcript_id "RvY_14697.1"; annotation "hypothetical protein."; Pfam "[Rpp20] Rpp20 subunit of nuclear RNase MRP and P|[Alba]"; KO "K14527"; Scaffold010 rebuild exon 1790855 1791448 . + . gene_id "RvY_14697"; transcript_id "RvY_14697.1"; Scaffold010 rebuild transcript 1791603 1794152 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; annotation "hypothetical protein."; Pfam "[Exo_endo_phos] Endonuclease/Exonuclease/phosphatase family"; EC "EC3.1.4.-"; similar_genes "TDP2_MOUSE(e-value:4.4e-07;bit-score:53.0)"; Scaffold010 rebuild exon 1791603 1791899 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1792165 1792335 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1792398 1792583 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1792665 1792750 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1792808 1793001 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1793082 1793173 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1793242 1793436 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1793531 1793713 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild exon 1794006 1794152 . - . gene_id "RvY_14698"; transcript_id "RvY_14698.1"; Scaffold010 rebuild transcript 1795694 1797736 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; gene_name "MFS"; annotation "putative Protein spinster homolog 2"; Pfam "[MFS_1] Major Facilitator Superfamily|[OATP] Organic Anion Transporter Polypeptide (OATP) family|[Sugar_tr] Sugar (and other) transporter|[MFS_2] MFS/sugar transport protein"; CDD "The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated."; similar_genes "SPNS2_HUMAN(e-value:1.7e-40;bit-score:164.0)"; Scaffold010 rebuild exon 1795694 1796053 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1796120 1796338 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1796417 1796553 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1796646 1796780 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1796854 1797049 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1797128 1797193 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1797328 1797498 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild exon 1797596 1797736 . + . gene_id "RvY_14699"; transcript_id "RvY_14699.1"; Scaffold010 rebuild transcript 1798011 1798458 . - . gene_id "RvY_14700"; transcript_id "RvY_14700.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1798011 1798160 . - . gene_id "RvY_14700"; transcript_id "RvY_14700.1"; Scaffold010 rebuild exon 1798324 1798458 . - . gene_id "RvY_14700"; transcript_id "RvY_14700.1"; Scaffold010 rebuild transcript 1800411 1802322 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; annotation "hypothetical protein."; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation"; Scaffold010 rebuild exon 1800411 1800551 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild exon 1800617 1800865 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild exon 1800932 1801283 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild exon 1801352 1801476 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild exon 1801618 1801893 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild exon 1801961 1802111 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild exon 1802192 1802322 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.1"; Scaffold010 rebuild transcript 1801741 1802924 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.2"; annotation "hypothetical protein."; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation"; Scaffold010 rebuild exon 1801741 1801893 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.2"; Scaffold010 rebuild exon 1801961 1802111 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.2"; Scaffold010 rebuild exon 1802192 1802313 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.2"; Scaffold010 rebuild exon 1802385 1802924 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.2"; Scaffold010 rebuild transcript 1802009 1802924 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.3"; annotation "hypothetical protein."; Pfam "[Patched] Patched family|[Sterol-sensing] Sterol-sensing domain of SREBP cleavage-activation"; Scaffold010 rebuild exon 1802009 1802111 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.3"; Scaffold010 rebuild exon 1802192 1802313 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.3"; Scaffold010 rebuild exon 1802385 1802924 . + . gene_id "RvY_14701"; transcript_id "RvY_14701.3"; Scaffold010 rebuild transcript 1804307 1805029 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.1"; gene_name "(1)PDZ(2)PDZ_signaling"; annotation "hypothetical protein."; Pfam "(2)[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "(1)Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.(2)PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; similar_genes "(2)YQI7_CAEEL(e-value:1.1e-16;bit-score:85.0)"; Scaffold010 rebuild exon 1804307 1804369 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.1"; Scaffold010 rebuild exon 1804515 1804643 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.1"; Scaffold010 rebuild exon 1804762 1804848 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.1"; Scaffold010 rebuild exon 1804931 1805029 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.1"; Scaffold010 rebuild transcript 1804355 1805029 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.2"; gene_name "(1)PDZ(2)PDZ_signaling"; annotation "hypothetical protein."; Pfam "(2)[PDZ_2] PDZ domain|[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "(1)Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.(2)PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; similar_genes "(2)YQI7_CAEEL(e-value:1.1e-16;bit-score:85.0)"; Scaffold010 rebuild exon 1804355 1804369 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.2"; Scaffold010 rebuild exon 1804515 1804643 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.2"; Scaffold010 rebuild exon 1804771 1804848 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.2"; Scaffold010 rebuild exon 1804931 1805029 . + . gene_id "RvY_14702"; transcript_id "RvY_14702.2"; Scaffold010 rebuild transcript 1805170 1808413 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1805170 1806809 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.1"; Scaffold010 rebuild exon 1806867 1806997 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.1"; Scaffold010 rebuild exon 1807068 1807190 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.1"; Scaffold010 rebuild exon 1807277 1807555 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.1"; Scaffold010 rebuild exon 1807626 1808413 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.1"; Scaffold010 rebuild transcript 1805170 1808413 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1805170 1806524 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; Scaffold010 rebuild exon 1806672 1806809 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; Scaffold010 rebuild exon 1806867 1806997 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; Scaffold010 rebuild exon 1807068 1807190 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; Scaffold010 rebuild exon 1807277 1807555 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; Scaffold010 rebuild exon 1807626 1808413 . - . gene_id "RvY_14703"; transcript_id "RvY_14703.2"; Scaffold010 rebuild transcript 1809467 1810451 . + . gene_id "RvY_14704"; transcript_id "RvY_14704.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1809467 1809809 . + . gene_id "RvY_14704"; transcript_id "RvY_14704.1"; Scaffold010 rebuild exon 1809945 1810196 . + . gene_id "RvY_14704"; transcript_id "RvY_14704.1"; Scaffold010 rebuild exon 1810312 1810451 . + . gene_id "RvY_14704"; transcript_id "RvY_14704.1"; Scaffold010 rebuild transcript 1811062 1814037 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; gene_name "HRAD17"; annotation "cell cycle checkpoint protein"; Pfam "[Rad17] Rad17 cell cycle checkpoint protein"; KO "K06662"; Scaffold010 rebuild exon 1811062 1811064 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1811137 1811481 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1811552 1811614 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1811682 1811823 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1811908 1812023 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1812132 1812184 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1812249 1812377 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1812451 1812520 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1812642 1812864 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1812965 1813197 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1813265 1813433 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1813491 1813577 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1813653 1813719 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild exon 1813779 1814037 . + . gene_id "RvY_14705"; transcript_id "RvY_14705.1"; Scaffold010 rebuild transcript 1814109 1815212 . - . gene_id "RvY_14706"; transcript_id "RvY_14706.1"; gene_name "ERI-1_3'hExo_like"; annotation "putative ERI1 exoribonuclease 3"; Pfam "[RNase_T] Exonuclease"; CDD "This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the Scaffold010 rebuild exon 1814109 1814515 . - . gene_id "RvY_14706"; transcript_id "RvY_14706.1"; Scaffold010 rebuild exon 1814573 1814777 . - . gene_id "RvY_14706"; transcript_id "RvY_14706.1"; Scaffold010 rebuild exon 1814850 1815212 . - . gene_id "RvY_14706"; transcript_id "RvY_14706.1"; Scaffold010 rebuild transcript 1815830 1818455 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; gene_name "EGL-9"; annotation "hypothetical protein."; Pfam "[2OG-FeII_Oxy_3] 2OG-Fe(II) oxygenase superfamily|[Ofd1_CTDD] Oxoglutarate and iron-dependent oxygenase degradation C-term"; CDD "Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]"; Scaffold010 rebuild exon 1815830 1816064 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1816176 1816351 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1816430 1816577 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1816657 1816776 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1816859 1816959 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1817033 1817161 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1817226 1817354 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1817442 1817530 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1817591 1817811 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1817876 1818072 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild exon 1818165 1818455 . + . gene_id "RvY_14707"; transcript_id "RvY_14707.1"; Scaffold010 rebuild transcript 1818654 1819822 . - . gene_id "RvY_14708"; transcript_id "RvY_14708.1"; annotation "hypothetical protein."; Pfam "[Zip] ZIP Zinc transporter"; KO "K14709"; Scaffold010 rebuild exon 1818654 1819372 . - . gene_id "RvY_14708"; transcript_id "RvY_14708.1"; Scaffold010 rebuild exon 1819438 1819822 . - . gene_id "RvY_14708"; transcript_id "RvY_14708.1"; Scaffold010 rebuild transcript 1820770 1821084 . - . gene_id "RvY_14709"; transcript_id "RvY_14709.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1820770 1821084 . - . gene_id "RvY_14709"; transcript_id "RvY_14709.1"; Scaffold010 rebuild transcript 1821705 1824757 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; gene_name "sulP"; annotation "hypothetical protein."; Pfam "[Sulfate_tra_GLY] Sulfate transporter N-terminal domain with GLY motif|[Sulfate_transp] Sulfate transporter family"; CDD "high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out)."; KO "K14708"; similar_genes "S2611_MOUSE(e-value:7.2e-16;bit-score:82.0)"; Scaffold010 rebuild exon 1821705 1822206 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1822295 1822353 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1822463 1822534 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1822604 1822739 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1822843 1823014 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1823115 1823266 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1823340 1823747 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1823811 1824147 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild exon 1824208 1824757 . + . gene_id "RvY_14710"; transcript_id "RvY_14710.1"; Scaffold010 rebuild transcript 1825178 1825603 . - . gene_id "RvY_14711"; transcript_id "RvY_14711.1"; annotation "hypothetical protein."; Pfam "[Yos1] Yos1-like"; similar_genes "IR3IP_BOVIN(e-value:2.3e-08;bit-score:57.0)"; Scaffold010 rebuild exon 1825178 1825233 . - . gene_id "RvY_14711"; transcript_id "RvY_14711.1"; Scaffold010 rebuild exon 1825320 1825442 . - . gene_id "RvY_14711"; transcript_id "RvY_14711.1"; Scaffold010 rebuild exon 1825513 1825603 . - . gene_id "RvY_14711"; transcript_id "RvY_14711.1"; Scaffold010 rebuild transcript 1825751 1826068 . + . gene_id "RvY_14712"; transcript_id "RvY_14712.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1825751 1826068 . + . gene_id "RvY_14712"; transcript_id "RvY_14712.1"; Scaffold010 rebuild transcript 1826272 1826595 . + . gene_id "RvY_14713"; transcript_id "RvY_14713.1"; gene_name "QCR9"; annotation "ubiquinol-cytochrome c reductase subunit 9 [EC:1.10.2.2]"; Pfam "[UCR_UQCRX_QCR9] Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like"; EC "EC1.10.2.2"; KO "K00419"; similar_genes "QCR9_BOVIN(e-value:1.6e-11;bit-score:67.0)"; Scaffold010 rebuild exon 1826272 1826430 . + . gene_id "RvY_14713"; transcript_id "RvY_14713.1"; Scaffold010 rebuild exon 1826518 1826595 . + . gene_id "RvY_14713"; transcript_id "RvY_14713.1"; Scaffold010 rebuild transcript 1826988 1828090 . - . gene_id "RvY_14714"; transcript_id "RvY_14714.1"; annotation "hypothetical protein."; Pfam "[GIY-YIG] GIY-YIG catalytic domain"; EC "EC3.6.1.-"; KO "K15078"; similar_genes "SLX1_ANOGA(e-value:9.1e-12;bit-score:68.0)"; Scaffold010 rebuild exon 1826988 1827443 . - . gene_id "RvY_14714"; transcript_id "RvY_14714.1"; Scaffold010 rebuild exon 1827542 1827629 . - . gene_id "RvY_14714"; transcript_id "RvY_14714.1"; Scaffold010 rebuild exon 1827697 1827825 . - . gene_id "RvY_14714"; transcript_id "RvY_14714.1"; Scaffold010 rebuild exon 1827909 1828090 . - . gene_id "RvY_14714"; transcript_id "RvY_14714.1"; Scaffold010 rebuild transcript 1828724 1830373 . + . gene_id "RvY_14715"; transcript_id "RvY_14715.1"; gene_name "PSMC3"; annotation "26S protease regulatory subunit 6A homolog"; Pfam "[AAA_5] AAA domain (dynein-related subfamily)|[AAA] ATPase family associated with various cellular activities (AAA)"; CDD "ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]"; KO "K03065"; similar_genes "PRS6A_ORYSJ(e-value:5.0e-178;bit-score:620.0)"; Scaffold010 rebuild exon 1828724 1829351 . + . gene_id "RvY_14715"; transcript_id "RvY_14715.1"; Scaffold010 rebuild exon 1829464 1829673 . + . gene_id "RvY_14715"; transcript_id "RvY_14715.1"; Scaffold010 rebuild exon 1829790 1829896 . + . gene_id "RvY_14715"; transcript_id "RvY_14715.1"; Scaffold010 rebuild exon 1830035 1830373 . + . gene_id "RvY_14715"; transcript_id "RvY_14715.1"; Scaffold010 rebuild transcript 1832133 1835900 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; gene_name "BIR"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[BIR] Inhibitor of Apoptosis domain"; CDD "Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes."; similar_genes "BIRC7_HUMAN(e-value:9.2e-14;bit-score:75.0)"; Scaffold010 rebuild exon 1832133 1832176 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; Scaffold010 rebuild exon 1833859 1834019 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; Scaffold010 rebuild exon 1834351 1835139 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; Scaffold010 rebuild exon 1835246 1835498 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; Scaffold010 rebuild exon 1835571 1835644 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; Scaffold010 rebuild exon 1835707 1835900 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.1"; Scaffold010 rebuild transcript 1833749 1835900 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; gene_name "BIR"; annotation "hypothetical protein."; Pfam "[zf-C3HC4_3] Zinc finger, C3HC4 type (RING finger)|[BIR] Inhibitor of Apoptosis domain"; CDD "Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes."; similar_genes "BIRC7_HUMAN(e-value:9.2e-14;bit-score:75.0)"; Scaffold010 rebuild exon 1833749 1833753 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; Scaffold010 rebuild exon 1833859 1834019 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; Scaffold010 rebuild exon 1834351 1835139 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; Scaffold010 rebuild exon 1835246 1835498 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; Scaffold010 rebuild exon 1835571 1835644 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; Scaffold010 rebuild exon 1835707 1835900 . + . gene_id "RvY_14716"; transcript_id "RvY_14716.2"; Scaffold010 rebuild transcript 1836788 1836991 . + . gene_id "RvY_14717"; transcript_id "RvY_14717.1"; annotation "hypothetical protein."; Scaffold010 rebuild exon 1836788 1836991 . + . gene_id "RvY_14717"; transcript_id "RvY_14717.1"; Scaffold010 rebuild transcript 1837486 1839494 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; gene_name "PDZ_signaling"; annotation "putative PDZ domain-containing protein GIPC3"; Pfam "[PDZ] PDZ domain (Also known as DHR or GLGF)"; CDD "PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases."; similar_genes "GIPC3_MOUSE(e-value:1.0e-42;bit-score:171.0)"; Scaffold010 rebuild exon 1837486 1837887 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1838064 1838115 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1838245 1838423 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1838513 1838657 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1838849 1838955 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1839026 1839107 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1839218 1839280 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild exon 1839364 1839494 . + . gene_id "RvY_14718"; transcript_id "RvY_14718.1"; Scaffold010 rebuild transcript 1839835 1842035 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; gene_name "MADHIP"; annotation "putative Zinc finger FYVE domain-containing protein 9"; Pfam "[DUF3480]"; KO "K04679"; similar_genes "ZFYV9_HUMAN(e-value:2.0e-28;bit-score:123.0)"; Scaffold010 rebuild exon 1839835 1840282 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild exon 1840516 1840943 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild exon 1841030 1841217 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild exon 1841284 1841523 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild exon 1841594 1841702 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild exon 1841773 1841951 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild exon 1842014 1842035 . - . gene_id "RvY_14719"; transcript_id "RvY_14719.1"; Scaffold010 rebuild transcript 1842157 1844583 . - . gene_id "RvY_14720"; transcript_id "RvY_14720.1"; gene_name "FYVE"; annotation "hypothetical protein."; Pfam "[FYVE] FYVE zinc finger"; CDD "Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the